3248 178 53 14 chr4 0 958 -202327389 + L1 LINE L1 2957 3998 -2148 2292 84 7 10 chr4 958 1257 -202327090 + AluSq SINE Alu 1 298 -15 3248 178 53 14 chr4 1257 1343 -202327004 + L1 LINE L1 3998 4079 -2067 299 116 0 0 chr4 1443 1486 -202326861 + AluSc SINE Alu 247 289 -10 459 262 128 0 chr4 1503 1675 -202326672 - MER33 DNA MER1_type -129 195 2 707 206 14 27 chr4 1880 2026 -202326321 - MER61D LTR ERV1 -20 481 338 2071 123 0 0 chr4 2493 2803 -202325544 - AluSc SINE Alu 0 312 3 3644 127 37 0 chr4 3061 3638 -202324709 - MER51C LTR ERV1 0 640 1 2443 66 0 3 chr4 3955 4257 -202324090 - AluSc SINE Alu -8 301 1 265 313 20 30 chr4 6163 6262 -202322085 - MIR3 SINE MIR -28 180 83 552 237 87 27 chr4 6965 7184 -202321163 - L2 LINE L2 -5 3308 3077 235 241 72 0 chr4 8217 8300 -202320047 + L1MC4a LINE L1 5347 5435 -727 195 322 0 0 chr4 8429 8488 -202319859 + L2 LINE L2 2562 2620 -694 186 295 92 46 chr4 8638 8855 -202319492 + L2 LINE L2 2818 3044 -228 316 290 59 32 chr4 8864 9050 -202319297 + L1MC4a LINE L1 5740 5930 -1878 369 0 0 0 chr4 9079 9120 -202319227 + (CA)n Simple_repeat Simple_repeat 2 42 0 22 56 0 0 chr4 9196 9232 -202319115 + AT_rich Low_complexity Low_complexity 1 36 0 239 139 0 23 chr4 9486 9529 -202318818 - L1M4 LINE L1 -5660 882 841 1062 238 155 32 chr4 9829 10472 -202317875 + L1MB8 LINE L1 1386 2384 -4441 1599 198 44 68 chr4 10506 10672 -202317675 + L1MB8 LINE L1 6159 6327 -349 2410 91 3 7 chr4 10672 10981 -202317366 - AluSp SINE Alu -5 308 1 1599 198 44 68 chr4 10981 11268 -202317079 + L1MB8 LINE L1 6327 6601 -75 3534 125 0 4 chr4 11438 11950 -202316397 + MER9 LTR ERVK 1 510 -1 287 308 56 0 chr4 13402 13509 -202314838 + MIR SINE MIR 31 143 -119 353 252 220 13 chr4 13605 13918 -202314429 + L2 LINE L2 2871 3248 -65 224 147 26 58 chr4 13945 14138 -202314209 + (CAGAGA)n Simple_repeat Simple_repeat 1 186 0 228 179 13 51 chr4 14050 14128 -202314219 + (CAGAA)n Simple_repeat Simple_repeat 5 79 0 667 230 0 14 chr4 14754 14893 -202313454 + AluJo SINE Alu 2 138 -174 1303 148 0 48 chr4 16343 16572 -202311775 - AluJo SINE Alu -13 299 82 555 282 12 0 chr4 17403 17573 -202310774 + L1MB2 LINE L1 16 187 -6355 539 110 37 0 chr4 17709 17791 -202310556 - AluSc SINE Alu -224 85 1 2187 106 3 6 chr4 17847 18158 -202310189 + AluY SINE Alu 2 311 0 508 255 98 76 chr4 18163 19056 -202309291 + L1MB2 LINE L1 2416 3331 -3313 1408 99 0 35 chr4 19063 19264 -202309083 + AluYa5 SINE Alu 103 296 -15 442 293 68 8 chr4 19300 19566 -202308781 + L1MA8 LINE L1 4527 4808 -1338 750 287 126 2 chr4 19600 20014 -202308333 + L1MB2 LINE L1 5675 6139 -32 1786 185 65 120 chr4 20144 21270 -202307077 + L1MA8 LINE L1 4884 5937 -354 226 284 0 25 chr4 21273 21354 -202306993 + L1MB2 LINE L1 5544 5622 -1022 2391 80 0 3 chr4 21461 21763 -202306584 + AluY SINE Alu 1 301 -10 360 0 0 0 chr4 21763 21803 -202306544 + (TA)n Simple_repeat Simple_repeat 2 41 0 404 246 103 17 chr4 21803 21978 -202306369 + L1MB2 LINE L1 6147 6336 -345 3870 98 72 3 chr4 21981 22552 -202305795 + LTR66 LTR ERVL 1 610 0 13495 98 7 1 chr4 22552 24338 -202304009 + HERVL66 LTR ERVL 1 1797 -2532 313 71 54 71 chr4 24318 24374 -202303973 + HERVL66 LTR ERVL 2654 2708 -1621 * 5097 74 5 12 chr4 24365 25503 -202302844 + HERVL66 LTR ERVL 3064 4329 0 4018 83 88 4 chr4 25503 26059 -202302288 + LTR66 LTR ERVL 1 603 -7 2135 96 4 7 chr4 26104 26376 -202301971 + AluSc SINE Alu 13 283 -26 490 309 75 10 chr4 26400 26695 -202301652 + L1MB2 LINE L1 6352 6665 -4 1013 86 0 0 chr4 26946 27074 -202301273 + AluSg/x SINE Alu 170 297 -15 1857 168 28 39 chr4 27074 27262 -202301085 - MSTA LTR MaLR -66 362 178 2354 83 0 32 chr4 27262 27574 -202300773 + AluY SINE Alu 1 302 -9 1857 168 28 39 chr4 27574 27749 -202300598 - MSTA LTR MaLR -250 178 3 808 270 41 4 chr4 27750 28020 -202300327 + L1MB1 LINE L1 5712 5991 -177 269 287 40 30 chr4 28018 28119 -202300228 + L1 LINE L1 125 226 -5729 * 881 293 115 45 chr4 28123 28741 -202299606 + L1 LINE L1 189 849 -5106 1177 231 49 81 chr4 28767 29030 -202299317 + L1 LINE L1 3963 4233 -1801 658 227 0 0 chr4 29030 29158 -202299189 - FLAM_C SINE Alu -4 129 2 1177 231 49 81 chr4 29158 29486 -202298861 + L1 LINE L1 4233 4535 -1499 1223 124 43 0 chr4 29607 29792 -202298555 + AluY SINE Alu 119 311 0 740 211 45 0 chr4 29796 29952 -202298395 - LTR56 LTR ERV1 -282 163 1 7520 39 5 1 chr4 30071 31181 -202297166 + L1PA5 LINE L1 5035 6147 -7 1264 239 48 5 chr4 31557 32081 -202296266 - MER67C LTR ERV1 -4 706 101 420 121 0 0 chr4 32085 32143 -202296204 + AluSx SINE Alu 4 61 -251 4677 25 9 5 chr4 32143 32699 -202295648 + LTR6B LTR ERV1 1 558 0 1676 97 13 4 chr4 32703 32941 -202295406 + AluSx SINE Alu 62 301 -11 237 81 27 0 chr4 32942 32979 -202295368 - MER67C LTR ERV1 -604 106 69 314 279 90 34 chr4 33738 34082 -202294265 - MER21B LTR ERV1 -75 856 416 966 221 100 7 chr4 35197 35477 -202292870 - MER33 DNA MER1_type -14 310 5 662 228 13 27 chr4 35680 35829 -202292518 - MER61D LTR ERV1 -17 484 338 3523 120 55 5 chr4 36539 37112 -202291235 - MER51C LTR ERV1 0 640 1 1278 291 77 7 chr4 37301 37741 -202290606 - MLT1H LTR MaLR -72 477 7 430 240 23 76 chr4 38416 38587 -202289760 + MER5B DNA MER1_type 1 162 -16 373 98 0 33 chr4 39000 39061 -202289286 - Alu SINE Alu -7 294 236 299 226 0 47 chr4 39146 39252 -202289095 - L1ME3A LINE L1 -2 6168 6068 2412 86 0 3 chr4 39479 39783 -202288564 - AluY SINE Alu -8 303 1 195 218 55 0 chr4 39976 40031 -202288316 - MER5A DNA MER1_type -76 113 56 2265 92 7 13 chr4 41623 41929 -202286418 + AluY SINE Alu 1 304 -7 2432 83 3 0 chr4 41939 42239 -202286108 + AluSp SINE Alu 2 302 -11 1156 248 6 58 chr4 42456 42596 -202285751 + AluJb SINE Alu 2 148 -154 2252 116 0 0 chr4 42596 42888 -202285459 + AluSg SINE Alu 1 292 -18 1156 248 6 58 chr4 42888 43058 -202285289 + AluJb SINE Alu 148 296 -6 394 192 0 19 chr4 43186 43290 -202285057 + GA-rich Low_complexity Low_complexity 2 103 0 2339 176 18 17 chr4 43325 43963 -202284384 + L1P4 LINE L1 5044 5680 -486 * 7838 108 12 2 chr4 43960 45037 -202283310 - THE1B-int LTR MaLR -492 1088 1 2004 123 77 40 chr4 45037 45388 -202282959 - THE1B LTR MaLR 0 364 1 1161 257 75 32 chr4 45686 46323 -202282024 - L2 LINE L2 -36 3277 2624 333 162 0 0 chr4 47322 47390 -202280957 + (TCCA)n Simple_repeat Simple_repeat 3 70 0 2331 107 0 0 chr4 47684 47984 -202280363 - AluSc SINE Alu -9 300 1 265 256 174 25 chr4 48031 48152 -202280195 + MIR3 SINE MIR 7 145 -63 2014 123 41 3 chr4 48406 48698 -202279649 - AluSg SINE Alu -7 303 1 2091 120 6 35 chr4 49061 49378 -202278969 + AluSq SINE Alu 1 308 -5 2423 91 0 3 chr4 49981 50290 -202278057 + AluY SINE Alu 2 309 -2 2512 76 3 0 chr4 50290 50592 -202277755 + AluSp SINE Alu 1 303 -10 434 165 10 39 chr4 51242 51345 -202277002 + SVA Other Other 583 682 -704 2362 106 0 0 chr4 51582 51883 -202276464 + AluSg SINE Alu 1 301 -9 1149 203 44 0 chr4 51915 52210 -202276137 + L1MA7 LINE L1 5981 6288 -3 2112 124 3 7 chr4 52425 52731 -202275616 - AluSx SINE Alu -7 305 1 1394 183 0 0 chr4 53043 53273 -202275074 + AluSx SINE Alu 64 293 -19 314 333 49 25 chr4 53328 53532 -202274815 + L1M4 LINE L1 4744 4952 -1194 1688 271 90 33 chr4 53548 53771 -202274576 + L1M4 LINE L1 3435 3644 -2502 1894 130 45 3 chr4 53771 54063 -202274284 + AluY SINE Alu 1 304 -7 1688 271 90 33 chr4 54063 54412 -202273935 + L1M4 LINE L1 3644 3971 -2175 2439 88 0 0 chr4 54412 54717 -202273630 + AluY SINE Alu 1 305 -6 1688 271 90 33 chr4 54717 55265 -202273082 + L1M4 LINE L1 3971 4642 -1504 2362 79 9 25 chr4 55265 55582 -202272765 - AluSp SINE Alu -1 312 1 1688 271 90 33 chr4 55582 55742 -202272605 + L1M4 LINE L1 4642 4791 -1355 6495 248 27 17 chr4 55751 57981 -202270366 + L1PA12 LINE L1 178 3221 -4363 2549 151 37 31 chr4 57981 58470 -202269877 + LTR22B LTR ERVK 1 492 0 6495 248 27 17 chr4 58470 58506 -202269841 + L1PA12 LINE L1 3221 3255 -4329 2160 106 3 3 chr4 58517 58800 -202269547 + AluSq SINE Alu 1 283 -30 456 67 0 0 chr4 58802 58862 -202269485 + (CATA)n Simple_repeat Simple_repeat 2 61 0 7400 85 17 19 chr4 58865 59874 -202268473 - LTR13 LTR ERVK 0 1007 1 1127 306 62 35 chr4 59887 60245 -202268102 - L1M4 LINE L1 -1744 4402 4055 2507 82 0 0 chr4 60245 60548 -202267799 - AluSg SINE Alu -7 303 1 1127 306 62 35 chr4 60548 60815 -202267532 - L1M4 LINE L1 -2091 4055 3796 2349 94 3 3 chr4 60815 61114 -202267233 - AluSc SINE Alu -10 299 1 1127 306 62 35 chr4 61114 61364 -202266983 - L1M4 LINE L1 -2350 3796 3503 302 309 133 21 chr4 61437 61625 -202266722 - L1M4 LINE L1 -1194 4952 4744 2269 111 0 0 chr4 61663 61960 -202266387 - AluSq SINE Alu -12 301 5 1326 192 0 0 chr4 61969 62209 -202266138 - AluJo SINE Alu -12 300 61 21 36 0 0 chr4 62267 62295 -202266052 + AT_rich Low_complexity Low_complexity 1 28 0 1981 100 8 0 chr4 62295 62554 -202265793 + AluSq SINE Alu 1 261 -52 23 68 0 0 chr4 62782 62826 -202265521 + AT_rich Low_complexity Low_complexity 1 44 0 22 56 0 0 chr4 62985 63021 -202265326 + AT_rich Low_complexity Low_complexity 1 36 0 2044 139 0 0 chr4 63021 63326 -202265021 + AluSx SINE Alu 1 305 0 278 254 164 25 chr4 63743 63865 -202264482 - MIR3 SINE MIR -63 145 7 237 221 0 0 chr4 64293 64361 -202263986 + (TGGA)n Simple_repeat Simple_repeat 3 70 0 532 240 190 14 chr4 65258 65479 -202262868 - MIR SINE MIR -1 261 2 335 231 0 23 chr4 66692 66822 -202261525 + (TG)n Simple_repeat Simple_repeat 2 128 0 277 281 76 67 chr4 67810 68152 -202260195 + MER21A LTR ERV1 512 856 -75 1715 250 149 5 chr4 68824 69440 -202258907 + MER67C LTR ERV1 1 705 -5 2339 144 64 9 chr4 69901 70323 -202258024 + LTR56 LTR ERV1 1 445 0 2316 71 27 7 chr4 70350 70644 -202257703 - AluSg SINE Alu -10 300 1 187 324 14 14 chr4 71774 71845 -202256502 + MER5A DNA MER1_type 31 101 -88 2593 65 0 0 chr4 72726 73034 -202255313 + AluY SINE Alu 1 308 -3 23 0 0 0 chr4 73591 73614 -202254733 + AT_rich Low_complexity Low_complexity 1 23 0 2481 82 0 0 chr4 73796 74102 -202254245 + AluSc SINE Alu 1 306 -3 1218 82 54 22 chr4 74685 74785 -202253562 + MER30B DNA MER1_type 1 111 -79 1910 101 4 0 chr4 74785 75033 -202253314 + AluSp SINE Alu 57 305 -8 1218 82 54 22 chr4 75033 75116 -202253231 + MER30B DNA MER1_type 111 190 0 494 188 99 35 chr4 75374 75577 -202252770 - MER6 DNA MER2_type -1 864 -65 2066 176 86 117 chr4 75608 76121 -202252226 - L1MA9 LINE L1 -26 6286 5758 242 133 0 0 chr4 76121 76166 -202252181 - LTR66 LTR ERVL -172 438 394 2066 176 86 117 chr4 76166 76314 -202252033 - L1MA9 LINE L1 -554 5758 5607 2275 115 3 0 chr4 76314 76619 -202251728 - AluSp SINE Alu -7 306 1 2475 70 0 0 chr4 76622 76921 -202251426 - AluY SINE Alu -12 299 1 2066 176 86 117 chr4 76921 77004 -202251343 - L1MA9 LINE L1 -707 5605 5518 850 209 37 81 chr4 77007 77134 -202251213 - L1MA9 LINE L1 -780 5366 5235 2080 117 21 0 chr4 77134 77424 -202250923 - AluY SINE Alu -15 296 1 850 209 37 81 chr4 77424 77678 -202250669 - L1MA9 LINE L1 -911 5235 5002 2138 105 0 51 chr4 77712 78025 -202250322 + AluSx SINE Alu 2 298 -14 1179 227 51 78 chr4 78027 78432 -202249915 - L1MA9 LINE L1 -1422 4724 4338 658 227 0 0 chr4 78432 78560 -202249787 + FLAM_C SINE Alu 2 129 -4 1179 227 51 78 chr4 78560 78744 -202249603 - L1MA9 LINE L1 -1808 4338 4151 732 266 24 34 chr4 78844 79051 -202249296 - L1M4b LINE L1 -6638 221 17 258 310 54 29 chr4 79579 79818 -202248529 + L1M4 LINE L1 4741 4985 -1161 587 280 54 16 chr4 79865 80227 -202248120 - L1MC5 LINE L1 -48 7913 7494 464 286 7 0 chr4 80262 80402 -202247945 - L1MC5 LINE L1 -1171 6790 6650 280 250 0 50 chr4 80955 81055 -202247292 + L1ME3A LINE L1 6068 6162 -8 1566 111 0 0 chr4 81111 81318 -202247029 - AluSc SINE Alu -15 294 88 8786 63 2 3 chr4 81318 82390 -202245957 + MER11C LTR ERVK 1 1071 0 435 127 0 0 chr4 82404 82467 -202245880 - AluS SINE Alu -247 64 2 336 227 40 0 chr4 82925 83000 -202245347 - MER5B DNA MER1_type -16 162 85 2267 78 0 4 chr4 83001 83282 -202245065 + AluSc SINE Alu 13 292 -17 509 325 68 24 chr4 83400 83652 -202244695 + L1M3a LINE L1 192 454 -5501 424 320 37 0 chr4 83654 83859 -202244488 + L1M3a LINE L1 550 736 -5219 * 1779 276 42 47 chr4 83837 84558 -202243789 + L1M3a LINE L1 344 944 -5011 2167 116 3 0 chr4 84558 84852 -202243495 + AluSx SINE Alu 1 295 -17 1779 276 42 47 chr4 84852 84880 -202243467 + L1M3a LINE L1 944 971 -4984 * 25330 88 8 10 chr4 84873 85541 -202242806 + L1PA7 LINE L1 1712 2380 -3774 2374 78 0 7 chr4 85541 85834 -202242513 + AluY SINE Alu 1 291 -20 25330 88 8 10 chr4 85834 87584 -202240763 + L1PA7 LINE L1 2380 4133 -2021 2347 105 0 0 chr4 87584 87879 -202240468 + AluSx SINE Alu 1 295 -17 25330 88 8 10 chr4 87879 89913 -202238434 + L1PA7 LINE L1 4133 6154 0 568 229 93 19 chr4 89918 90182 -202238165 + L1M3a LINE L1 945 1238 -4727 2247 106 7 0 chr4 90182 90483 -202237864 + AluSx SINE Alu 1 303 -9 568 229 93 19 chr4 90483 90542 -202237805 + L1M3a LINE L1 1238 1291 -4674 421 178 14 0 chr4 90660 90733 -202237614 + AluJo SINE Alu 61 134 -168 2156 104 7 20 chr4 90791 91090 -202237257 + AluY SINE Alu 1 295 -16 1453 224 0 14 chr4 91094 91388 -202236959 + AluJb SINE Alu 1 290 -22 1574 77 39 0 chr4 91490 91697 -202236650 + AluY SINE Alu 97 311 0 333 210 50 0 chr4 91698 91798 -202236549 + Charlie5 DNA MER1_type 2467 2571 -41 1163 117 0 0 chr4 92007 92170 -202236177 + AluSg/x SINE Alu 137 299 -13 1966 118 30 0 chr4 92345 92636 -202235711 + AluSg SINE Alu 1 299 0 1385 86 34 75 chr4 92936 93072 -202235275 - MER4-int LTR ERV1 -2506 4092 3971 2406 78 0 28 chr4 93072 93392 -202234955 + AluY SINE Alu 1 311 0 1385 86 34 75 chr4 93392 93522 -202234825 - MER4-int LTR ERV1 -2627 3971 3837 6234 99 149 148 chr4 93577 94596 -202233751 - MER4-int LTR ERV1 -3065 3533 2517 2001 154 0 20 chr4 94596 94901 -202233446 + AluSx SINE Alu 1 299 -13 6234 99 149 148 chr4 94901 95381 -202232966 - MER4-int LTR ERV1 -4081 2517 2039 574 67 0 0 chr4 95381 95456 -202232891 - Alu SINE Alu -12 297 223 2372 73 0 17 chr4 95383 95685 -202232662 - AluY SINE Alu -14 297 1 6234 99 149 148 chr4 95685 96093 -202232254 - MER4-int LTR ERV1 -4788 1810 1404 2343 62 31 0 chr4 96093 96381 -202231966 - AluY SINE Alu -14 297 1 6234 99 149 148 chr4 96381 96659 -202231688 - MER4-int LTR ERV1 -5194 1404 532 2214 100 0 10 chr4 96802 97101 -202231246 - AluSc SINE Alu -13 296 1 647 103 31 0 chr4 97102 97199 -202231148 - MER4-int LTR ERV1 -5506 1092 993 232 178 0 44 chr4 97219 97264 -202231083 - LTR49 LTR ERV1 -282 313 271 260 95 0 0 chr4 97297 97339 -202231008 - MER4-int LTR ERV1 -5872 726 685 407 137 14 27 chr4 97367 97440 -202230907 - MER4-int LTR ERV1 -5788 810 739 287 136 27 55 chr4 97784 97894 -202230453 - MER4-int LTR ERV1 -5925 673 567 2000 118 20 3 chr4 98182 98479 -202229868 + AluSg SINE Alu 3 304 -6 216 0 0 0 chr4 98798 98822 -202229525 + (A)n Simple_repeat Simple_repeat 1 24 0 183 211 58 19 chr4 99470 99522 -202228825 + L2 LINE L2 3175 3228 -85 635 146 89 8 chr4 100411 100534 -202227813 - LTR23 LTR ERV1 -5 432 300 252 184 0 0 chr4 100534 100583 -202227764 + (TA)n Simple_repeat Simple_repeat 2 50 0 266 281 0 0 chr4 100584 100673 -202227674 - L1MC4 LINE L1 -1339 6703 6615 195 184 0 0 chr4 100684 100722 -202227625 + (TA)n Simple_repeat Simple_repeat 1 38 0 26 0 0 0 chr4 100917 100943 -202227404 + AT_rich Low_complexity Low_complexity 1 26 0 207 0 0 0 chr4 100995 101018 -202227329 + (T)n Simple_repeat Simple_repeat 1 23 0 2200 110 10 0 chr4 101337 101636 -202226711 - AluSg SINE Alu -6 304 3 221 340 88 25 chr4 102002 102161 -202226186 - MER5B DNA MER1_type -1 177 9 1258 144 16 0 chr4 103839 104026 -202224321 + MER30B DNA MER1_type 1 190 0 281 134 71 189 chr4 104262 104326 -202224021 - MER6 DNA MER2_type -17 848 805 1910 135 7 7 chr4 104326 104614 -202223733 + AluSg SINE Alu 1 288 -22 281 134 71 189 chr4 104614 104676 -202223671 - MER6 DNA MER2_type -60 805 737 1795 172 43 91 chr4 104772 105301 -202223046 - L1MA9 LINE L1 -26 6286 5783 317 241 0 23 chr4 105290 105377 -202222970 - L1MC4 LINE L1 -1344 6698 6614 * 23 0 0 0 chr4 106086 106109 -202222238 + AT_rich Low_complexity Low_complexity 1 23 0 2463 82 0 0 chr4 106291 106597 -202221750 + AluSc SINE Alu 1 306 -3 1295 82 54 22 chr4 107180 107280 -202221067 + MER30B DNA MER1_type 1 111 -79 1903 101 4 0 chr4 107280 107528 -202220819 + AluSp SINE Alu 57 305 -8 1295 82 54 22 chr4 107528 107611 -202220736 + MER30B DNA MER1_type 111 190 0 503 188 99 35 chr4 107870 108073 -202220274 - MER6 DNA MER2_type -1 864 -65 2102 173 78 111 chr4 108104 108617 -202219730 - L1MA9 LINE L1 -26 6286 5755 249 133 0 0 chr4 108617 108662 -202219685 - LTR66 LTR ERVL -172 438 394 2102 173 78 111 chr4 108662 108808 -202219539 - L1MA9 LINE L1 -557 5755 5606 2259 115 3 0 chr4 108809 109114 -202219233 - AluSp SINE Alu -7 306 1 2333 76 0 10 chr4 109117 109419 -202218928 - AluY SINE Alu -12 299 1 247 239 56 80 chr4 109436 109649 -202218698 + L1M1 LINE L1 3343 3550 -4015 973 107 0 0 chr4 109674 109805 -202218542 - AluSg/x SINE Alu -4 308 178 943 195 6 6 chr4 110377 110551 -202217796 - MSTA LTR MaLR -254 174 1 449 211 48 160 chr4 110552 110622 -202217725 + L1MB2 LINE L1 5714 5790 -381 2373 69 16 13 chr4 110622 110927 -202217420 + AluY SINE Alu 1 306 -5 449 211 48 160 chr4 110927 111169 -202217178 + L1MB2 LINE L1 5790 5991 -180 * 934 294 64 82 chr4 111167 111540 -202216807 + L1MA9 LINE L1 125 479 -5476 2106 96 3 45 chr4 111540 111684 -202216663 + AluSg SINE Alu 1 149 -161 2217 74 42 0 chr4 111684 111967 -202216380 + AluY SINE Alu 2 296 -15 2106 96 3 45 chr4 111967 112135 -202216212 + AluSg SINE Alu 149 300 -10 934 294 64 82 chr4 112135 112500 -202215847 + L1MA9 LINE L1 479 849 -5106 2908 216 67 89 chr4 112529 112787 -202215560 + L1MA9 LINE L1 3954 4216 -1818 675 241 0 0 chr4 112787 112920 -202215427 - FLAM_C SINE Alu 0 133 1 2908 216 67 89 chr4 112920 113578 -202214769 + L1MA9 LINE L1 4216 4887 -1147 2300 73 7 3 chr4 113578 113866 -202214481 - AluY SINE Alu -21 290 2 2908 216 67 89 chr4 113866 114152 -202214195 + L1MA9 LINE L1 4887 5178 -856 1714 140 4 4 chr4 114152 114426 -202213921 + AluSp SINE Alu 36 309 0 1792 127 80 4 chr4 114426 114702 -202213645 + AluSc SINE Alu 1 297 -12 2908 216 67 89 chr4 114702 114827 -202213520 + L1MA9 LINE L1 5176 5255 -779 2292 164 104 101 chr4 114836 115588 -202212759 + L1MA9 LINE L1 5417 6170 -30 323 237 131 81 chr4 115624 115743 -202212604 + MER6B DNA MER2_type 2 136 -729 2128 109 13 3 chr4 115743 116045 -202212302 - AluSq SINE Alu -8 305 1 323 237 131 81 chr4 116045 116123 -202212224 + MER6B DNA MER2_type 136 209 -1 211 333 200 22 chr4 116846 116981 -202211366 - MER5A DNA MER1_type 0 189 31 249 288 40 56 chr4 117174 117299 -202211048 + MER93b LTR ERV1 215 337 -36 2207 110 0 3 chr4 118280 118588 -202209759 + AluSg SINE Alu 1 307 -3 2282 76 3 0 chr4 118592 118883 -202209464 + AluY SINE Alu 1 292 -19 660 313 56 47 chr4 120341 120785 -202207562 + LTR60-int LTR ERV1 6444 6891 -314 2036 78 82 3 chr4 120940 121222 -202207125 - AluY SINE Alu -6 305 2 1244 223 36 22 chr4 121321 121775 -202206572 + LTR60 LTR ERV1 1 545 -41 342 245 103 73 chr4 121637 121870 -202206477 + TAR1 Satellite telomeric 25 264 -1847 * 947 232 41 50 chr4 121923 122074 -202206273 - L1MB2 LINE L1 -170 6001 5850 414 234 15 102 chr4 122074 122211 -202206136 - FLAM_C SINE Alu -8 125 1 947 232 41 50 chr4 122211 122400 -202205947 - L1MB2 LINE L1 -321 5850 5664 230 291 9 45 chr4 122421 122456 -202205891 - L1MB2 LINE L1 -1159 4987 4952 2301 78 17 10 chr4 122456 122752 -202205595 - AluSx SINE Alu -14 298 1 230 291 9 45 chr4 122752 122826 -202205521 - L1MB2 LINE L1 -1194 4952 4882 2956 246 43 22 chr4 124082 124621 -202203726 - L1MB2 LINE L1 -2 6169 5602 1630 204 3 0 chr4 124621 124905 -202203442 - AluJb SINE Alu -25 287 3 2956 246 43 22 chr4 124905 125238 -202203109 - L1MB2 LINE L1 -569 5602 5278 570 125 42 0 chr4 125246 125342 -202203005 - AluSg/x SINE Alu 0 310 211 2107 125 0 3 chr4 125854 126150 -202202197 - AluSp SINE Alu -18 295 1 2253 107 0 0 chr4 126180 126480 -202201867 - AluSg SINE Alu -10 300 1 227 258 269 0 chr4 126551 126644 -202201703 + MER5A DNA MER1_type 56 173 -16 335 213 13 0 chr4 127080 127155 -202201192 + L1MA6 LINE L1 5866 5941 -359 231 361 0 0 chr4 127153 127261 -202201086 + L1MB2 LINE L1 5045 5152 -994 * 2117 80 20 40 chr4 127305 127604 -202200743 + AluY SINE Alu 4 296 -15 1079 295 74 15 chr4 127604 128079 -202200268 + L1MB2 LINE L1 5665 6167 -4 26 0 0 0 chr4 128323 128349 -202199998 + AT_rich Low_complexity Low_complexity 1 26 0 2141 107 6 22 chr4 128442 128759 -202199588 + AluSp SINE Alu 1 312 -1 269 174 22 0 chr4 129111 129157 -202199190 + L1M4c LINE L1 1 47 -5908 460 189 32 0 chr4 129189 129284 -202199063 - L1PBa LINE L1 -6463 400 303 24 32 0 0 chr4 131648 131679 -202196668 + AT_rich Low_complexity Low_complexity 1 31 0 2194 113 3 0 chr4 132223 132515 -202195832 + AluSq SINE Alu 1 293 -20 742 327 86 22 chr4 132518 132879 -202195468 + L1M4c LINE L1 71 454 -5501 2199 283 73 38 chr4 132891 134798 -202193549 + L1M4c LINE L1 344 1794 -4241 2204 99 7 0 chr4 134806 135099 -202193248 + AluY SINE Alu 1 295 -16 431 173 0 62 chr4 135171 135252 -202193095 + AluJo SINE Alu 61 136 -176 1710 186 0 14 chr4 135289 135574 -202192773 + AluJb SINE Alu 1 281 -31 1997 242 107 39 chr4 135616 135830 -202192517 + L1M4c LINE L1 1774 1972 -4062 2187 118 7 0 chr4 135830 136134 -202192213 + AluY SINE Alu 1 306 -5 1997 242 107 39 chr4 136134 136207 -202192140 + L1M4c LINE L1 1972 2039 -3995 1194 308 58 8 chr4 136207 136584 -202191763 + MSTD LTR MaLR 1 396 0 1997 242 107 39 chr4 136584 137508 -202190839 + L1M4c LINE L1 2039 3071 -2963 307 273 7 93 chr4 137510 137555 -202190792 - MER67C LTR ERV1 -573 137 90 2186 98 3 14 chr4 137555 137852 -202190495 + AluSg SINE Alu 1 294 -16 307 273 7 93 chr4 137852 137956 -202190391 - MER67C LTR ERV1 -620 90 1 264 122 0 0 chr4 138431 138472 -202189875 + (A)n Simple_repeat Simple_repeat 1 41 0 1485 203 0 23 chr4 138533 138834 -202189513 - AluJb SINE Alu -18 294 1 2131 51 83 11 chr4 138839 139115 -202189232 - AluY SINE Alu -15 296 1 881 283 79 6 chr4 139161 139479 -202188868 - MER21B LTR ERV1 -107 756 416 1320 223 156 31 chr4 139531 140043 -202188304 + MER92B LTR ERV1 59 634 -2 312 48 0 0 chr4 141215 141257 -202187090 + (TG)n Simple_repeat Simple_repeat 1 42 0 5159 187 51 13 chr4 141775 143478 -202184869 + L1MA3 LINE L1 4085 5722 -583 2211 54 91 0 chr4 143478 143754 -202184593 - AluY SINE Alu -10 301 1 5159 187 51 13 chr4 143754 144130 -202184217 + L1MA3 LINE L1 5722 6256 -49 2115 84 42 7 chr4 144130 144417 -202183930 + AluY SINE Alu 1 297 -14 5159 187 51 13 chr4 144417 144469 -202183878 + L1MA3 LINE L1 6256 6305 0 373 288 49 10 chr4 144895 145100 -202183247 + L1MB2 LINE L1 4639 4851 -1295 1086 257 39 12 chr4 145102 145437 -202182910 + L1MB2 LINE L1 5675 6018 -153 965 59 8 0 chr4 145485 145603 -202182744 - AluY SINE Alu -43 268 150 695 137 8 8 chr4 145613 145744 -202182603 - L1PA13 LINE L1 -4 6159 6029 1116 281 37 50 chr4 145856 145960 -202182387 + L1 LINE L1 4519 4623 -1523 2130 110 7 3 chr4 145960 146250 -202182097 - AluSg SINE Alu -17 293 3 1116 281 37 50 chr4 146250 146719 -202181628 + L1 LINE L1 4623 5084 -1062 1093 109 14 0 chr4 146719 146866 -202181481 - AluSg/x SINE Alu -16 296 148 1917 89 19 19 chr4 146867 147124 -202181223 - AluY SINE Alu -54 257 1 758 314 26 74 chr4 147194 147656 -202180691 + L1M3a LINE L1 118 557 -5398 1196 192 179 26 chr4 147861 148251 -202180096 + LTR7 LTR ERV1 1 450 0 2029 194 49 25 chr4 148251 148699 -202179648 + HERVH LTR ERV1 1 459 -7254 11594 150 9 41 chr4 148757 149580 -202178767 + HERVH LTR ERV1 800 1648 -6065 2985 13 0 0 chr4 149580 149898 -202178449 - AluYb8 SINE Alu 0 318 1 11594 150 9 41 chr4 149898 150885 -202177462 + HERVH LTR ERV1 1648 2534 -5179 2459 76 0 0 chr4 150885 151176 -202177171 + AluY SINE Alu 1 291 -20 11594 150 9 41 chr4 151176 151464 -202176883 + HERVH LTR ERV1 2534 2830 -4883 4130 135 2 5 chr4 151464 152103 -202176244 + HERVH LTR ERV1 3357 3993 -3720 2998 149 15 20 chr4 152086 152637 -202175710 + HERVH LTR ERV1 3993 5286 -1805 * 4460 125 40 38 chr4 152635 153586 -202174761 + pTR5 LTR ERV1 741 2025 -413 375 235 10 0 chr4 153586 153684 -202174663 + LTR30 LTR ERV1 544 642 -80 1546 90 5 9 chr4 153687 153910 -202174437 + pTR5 LTR ERV1 172 393 -2045 * 20375 150 5 3 chr4 153909 157160 -202171187 + HERVH LTR ERV1 4458 7713 0 1207 193 185 28 chr4 157160 157549 -202170798 + LTR7 LTR ERV1 1 450 0 3166 232 59 46 chr4 157677 157910 -202170437 + L1MA10 LINE L1 4112 4340 -1828 633 248 0 0 chr4 157910 158043 -202170304 - FLAM_C SINE Alu 0 133 1 3166 232 59 46 chr4 158043 159047 -202169300 + L1MA10 LINE L1 4340 5366 -802 1923 179 137 103 chr4 159060 159464 -202168883 + L1MA10 LINE L1 5529 5918 -416 821 126 0 22 chr4 159464 159599 -202168748 - FLAM_C SINE Alu 0 133 2 1923 179 137 103 chr4 159599 159788 -202168559 + L1MA10 LINE L1 5918 6099 -235 2335 101 0 0 chr4 159788 160086 -202168261 - AluSg SINE Alu -12 298 1 1923 179 137 103 chr4 160086 160241 -202168106 + L1MA10 LINE L1 6099 6304 -30 359 243 52 62 chr4 160272 160376 -202167971 + MER6B DNA MER2_type 1 104 -761 9620 23 2 245 chr4 160376 162191 -202166156 - SVA Other Other -1 1385 13 359 243 52 62 chr4 162191 162215 -202166132 + MER6B DNA MER2_type 104 127 -738 1693 102 0 5 chr4 162215 162431 -202165916 - AluSg SINE Alu -95 215 1 359 243 52 62 chr4 162431 162511 -202165836 + MER6B DNA MER2_type 127 208 -2 1202 144 5 0 chr4 162723 162911 -202165436 - MER30B DNA MER1_type -1 189 1 3685 126 14 14 chr4 163813 164384 -202163963 - LTR10C LTR ERV1 -20 571 1 3579 58 74 0 chr4 166879 167326 -202161021 - LTR2B LTR ERV1 0 490 11 2317 123 60 13 chr4 167434 167865 -202160482 - LTR56 LTR ERV1 -5 433 9 2124 106 0 26 chr4 168186 168489 -202159858 - AluY SINE Alu -16 295 1 1392 229 50 48 chr4 168644 169291 -202159056 - MER67C LTR ERV1 -5 705 1 307 290 99 34 chr4 170057 170319 -202158028 - MER21B LTR ERV1 -169 694 416 390 266 8 16 chr4 170351 170475 -202157872 + MER93a LTR ERV1 244 366 -36 23 0 0 0 chr4 171317 171340 -202157007 + AT_rich Low_complexity Low_complexity 1 23 0 860 247 62 43 chr4 171413 171531 -202156816 - MER33 DNA MER1_type -2275 310 196 1966 132 16 3 chr4 171531 171834 -202156513 + AluSc SINE Alu 1 307 -2 860 247 62 43 chr4 171834 172019 -202156328 - MER33 DNA MER1_type -2389 196 1 728 205 49 33 chr4 172222 172427 -202155920 - MER61D LTR ERV1 -18 732 338 3524 131 38 2 chr4 173086 173661 -202154686 - MER51C LTR ERV1 0 640 3 1053 289 131 7 chr4 173845 174264 -202154083 - MLT1H LTR MaLR -72 477 7 2475 63 7 3 chr4 174914 175213 -202153134 + AluY SINE Alu 1 300 -11 576 262 39 78 chr4 175236 175455 -202152892 - MER52-int LTR ERV1 -1818 5273 5047 1321 384 7 16 chr4 175455 175762 -202152585 + AluSx SINE Alu 5 308 -4 576 262 39 78 chr4 175762 175869 -202152478 - MER52-int LTR ERV1 -2044 5047 3967 280 250 91 0 chr4 176402 176490 -202151857 + MIR SINE MIR 92 187 -75 2151 110 7 27 chr4 176490 176790 -202151557 - AluSq SINE Alu -19 294 1 1010 208 76 25 chr4 176924 177373 -202150974 + L1MA8 LINE L1 5748 6287 -4 2164 120 3 0 chr4 177489 177790 -202150557 + AluSg SINE Alu 1 302 -8 2358 111 0 0 chr4 178020 178327 -202150020 + AluSg SINE Alu 1 307 -3 791 204 101 86 chr4 178893 179058 -202149289 - MER92B LTR ERV1 0 636 475 2181 90 3 7 chr4 179058 179347 -202149000 + AluSc SINE Alu 1 288 -21 791 204 101 86 chr4 179347 179519 -202148828 - MER92B LTR ERV1 -161 475 294 300 274 32 21 chr4 179553 179648 -202148699 - MER92B LTR ERV1 -508 128 33 917 251 118 30 chr4 179662 180025 -202148322 + MER21B LTR ERV1 400 794 -69 1684 185 0 7 chr4 180044 180341 -202148006 + AluJb SINE Alu 1 295 -17 1843 145 7 14 chr4 180402 180718 -202147629 - AluSx SINE Alu 0 314 1 442 231 30 8 chr4 181354 181488 -202146859 + MER67C LTR ERV1 1 137 -573 1019 262 80 34 chr4 181491 182123 -202146224 - L1 LINE L1 -2963 3071 2469 2023 119 6 50 chr4 182123 182463 -202145884 - AluSx SINE Alu 0 312 1 1019 262 80 34 chr4 182463 182657 -202145690 - L1 LINE L1 -3565 2469 2285 858 277 64 56 chr4 182657 182908 -202145439 - MSTD LTR MaLR 0 396 148 2129 111 7 3 chr4 182908 183206 -202145141 + AluSg SINE Alu 1 299 -11 858 277 64 56 chr4 183206 183271 -202145076 - MSTD LTR MaLR -248 148 85 1750 117 47 33 chr4 183271 183570 -202144777 - AluSc SINE Alu -6 303 1 858 277 64 56 chr4 183570 183645 -202144702 - MSTD LTR MaLR -311 85 1 1019 262 80 34 chr4 183645 183916 -202144431 - L1 LINE L1 -3749 2285 1787 1401 216 20 24 chr4 183919 184211 -202144136 - AluJb SINE Alu -21 291 1 691 130 0 0 chr4 184297 184397 -202143950 + AluSg/x SINE Alu 202 301 -9 2336 283 73 50 chr4 184397 184654 -202143693 - L1 LINE L1 -4519 1446 1196 2010 103 16 53 chr4 184654 184975 -202143372 - AluSc SINE Alu 0 309 1 2336 283 73 50 chr4 184975 185137 -202143210 - L1 LINE L1 -4769 1196 1039 2264 118 7 0 chr4 185137 185442 -202142905 - AluSq SINE Alu -6 307 1 2336 283 73 50 chr4 185442 185521 -202142826 - L1 LINE L1 -4926 1039 963 2161 117 7 7 chr4 185521 185828 -202142519 - AluSc SINE Alu 0 309 3 2336 283 73 50 chr4 185828 186600 -202141747 - L1 LINE L1 -5002 963 344 333 314 29 0 chr4 186680 186782 -202141565 - L1M3a LINE L1 -5211 744 640 903 328 88 24 chr4 186790 187208 -202141139 - L1M3a LINE L1 -5501 454 10 22 0 0 0 chr4 187757 187779 -202140568 + AT_rich Low_complexity Low_complexity 1 22 0 669 256 146 6 chr4 188026 188347 -202140000 - L1MB3 LINE L1 -4 6179 5814 * 15733 55 6 8 chr4 188343 190432 -202137915 - L1PA5 LINE L1 -1 6153 4072 2130 102 0 7 chr4 190432 190727 -202137620 + AluY SINE Alu 3 295 -16 15733 55 6 8 chr4 190727 191556 -202136791 - L1PA5 LINE L1 -2082 4072 3243 4481 180 36 2 chr4 191564 192424 -202135923 - L1P LINE L1 -5247 899 11 2849 224 47 18 chr4 192430 193261 -202135086 - L1MB3 LINE L1 -810 5336 4476 1985 146 17 0 chr4 193261 193556 -202134791 - AluSg SINE Alu -9 301 2 2849 224 47 18 chr4 193556 193625 -202134722 - L1MB3 LINE L1 -1670 4476 4410 1801 158 27 10 chr4 193626 193923 -202134424 - AluSx SINE Alu -10 302 1 622 247 16 21 chr4 193931 194117 -202134230 + L1 LINE L1 3907 4091 -2055 21 0 0 0 chr4 194117 194138 -202134209 + AT_rich Low_complexity Low_complexity 1 21 0 2094 109 39 0 chr4 194475 194759 -202133588 - AluSg SINE Alu -15 295 1 478 118 0 13 chr4 194796 194872 -202133475 - L1PA7 LINE L1 -7 6147 6073 496 303 37 72 chr4 194878 195200 -202133147 - L1MB2 LINE L1 -53 6354 6051 2024 135 0 17 chr4 195200 195497 -202132850 - AluSx SINE Alu -20 292 1 496 303 37 72 chr4 195497 195633 -202132714 - L1MB2 LINE L1 -356 6051 5912 508 283 72 31 chr4 195637 195927 -202132420 - L1MB2 LINE L1 -1296 5086 4785 423 298 27 30 chr4 195931 196114 -202132233 - L1MB2 LINE L1 -3505 2877 2694 246 32 0 0 chr4 196114 196145 -202132202 + (CA)n Simple_repeat Simple_repeat 2 32 0 423 298 27 30 chr4 196145 196256 -202132091 - L1MB2 LINE L1 -3688 2694 2584 287 256 110 51 chr4 196375 196693 -202131654 - L1MB2 LINE L1 -3890 2494 2196 252 0 0 0 chr4 196693 196721 -202131626 + (TA)n Simple_repeat Simple_repeat 2 29 0 2340 97 0 3 chr4 196721 197020 -202131327 - AluSc SINE Alu -11 298 1 287 256 110 51 chr4 197020 197129 -202131218 - L1MB2 LINE L1 -4187 2197 2041 679 300 64 18 chr4 197218 197690 -202130657 - L1MB2 LINE L1 -4452 1930 1355 2265 94 0 10 chr4 197690 197987 -202130360 - AluY SINE Alu -17 294 1 679 300 64 18 chr4 197987 198030 -202130317 - L1MB2 LINE L1 -5027 1355 1315 43 35 0 0 chr4 198048 198105 -202130242 + AT_rich Low_complexity Low_complexity 1 57 0 2183 107 0 3 chr4 198191 198480 -202129867 - AluSc SINE Alu -16 293 6 2035 109 0 4 chr4 198517 198792 -202129555 - AluY SINE Alu -34 277 4 283 354 20 44 chr4 199238 199535 -202128812 - L1MB2 LINE L1 -5596 707 418 21 0 0 0 chr4 202998 203019 -202125328 + AT_rich Low_complexity Low_complexity 1 21 0 848 149 90 11 chr4 203275 203463 -202124884 - L1MA3 LINE L1 -5 6300 6098 2078 131 3 3 chr4 204839 205144 -202123203 + AluSc SINE Alu 1 305 -4 246 239 0 16 chr4 207162 207292 -202121055 + (CA)n Simple_repeat Simple_repeat 1 127 0 374 304 82 78 chr4 207831 208305 -202120042 - L1M2 LINE L1 -5522 1327 852 544 230 122 48 chr4 208474 208704 -202119643 + MIR SINE MIR 14 260 -2 2040 76 10 7 chr4 209278 209581 -202118766 - LTR6B LTR ERV1 -254 304 1 426 121 0 0 chr4 209581 209639 -202118708 - AluS SINE Alu -248 61 4 1139 239 48 5 chr4 209643 210167 -202118180 + MER67C LTR ERV1 101 706 -4 1486 153 0 14 chr4 210543 210825 -202117522 - L1PA5 LINE L1 -7 6147 5870 1928 109 39 0 chr4 211297 211582 -202116765 + AluY SINE Alu 1 296 -15 845 202 43 11 chr4 211582 211770 -202116577 - MSTA LTR MaLR -66 362 169 2329 75 0 33 chr4 211770 212076 -202116271 + AluY SINE Alu 1 296 -15 1407 143 14 0 chr4 212528 212751 -202115596 - AluSg/x SINE Alu -18 294 69 331 272 33 0 chr4 212867 212959 -202115388 - AluS SINE Alu -208 95 1 2326 231 57 52 chr4 212959 213891 -202114456 + L1M2 LINE L1 4308 5247 -899 2082 95 4 0 chr4 213891 214153 -202114194 + AluSp SINE Alu 38 300 -13 2326 231 57 52 chr4 214153 214274 -202114073 + L1M2 LINE L1 5247 5366 -780 225 242 16 0 chr4 214277 214339 -202114008 + L1M2 LINE L1 5518 5580 -720 1010 87 0 0 chr4 214343 214470 -202113877 + AluY SINE Alu 1 127 -184 598 317 74 43 chr4 214648 215137 -202113210 - L1M3a LINE L1 -5106 849 346 244 325 12 25 chr4 215133 215296 -202113051 - L1M3a LINE L1 -5251 704 544 * 280 272 19 29 chr4 215324 215427 -202112920 - L1M3a LINE L1 -5729 226 125 * 724 273 33 4 chr4 215425 215696 -202112651 - L1MB2 LINE L1 -180 5991 5713 844 157 35 12 chr4 215696 215868 -202112479 + MSTA LTR MaLR 1 176 -252 801 219 109 21 chr4 216446 216684 -202111663 + MSTA LTR MaLR 170 428 0 761 107 0 0 chr4 216736 216839 -202111508 - AluY SINE Alu -208 103 1 1252 270 75 12 chr4 216905 217820 -202110527 + L1M3 LINE L1 4685 5655 -513 906 78 0 9 chr4 217843 217959 -202110388 + Alu SINE Alu 175 289 -21 257 245 43 0 chr4 217969 218063 -202110284 - L1 LINE L1 -1517 4517 4420 2076 122 7 0 chr4 218096 218391 -202109956 + AluSx SINE Alu 1 297 -15 2133 94 7 0 chr4 218450 218738 -202109609 - AluY SINE Alu -21 290 1 673 115 33 8 chr4 218793 218915 -202109432 + L1PA13 LINE L1 6035 6159 -4 644 286 68 4 chr4 218942 219253 -202109094 - L1MB2 LINE L1 -148 6259 5911 375 305 71 13 chr4 219255 219481 -202108866 - L1MB2 LINE L1 -1295 5087 4849 1205 159 5 24 chr4 219649 219857 -202108490 + AluJb SINE Alu 84 287 -25 269 258 47 39 chr4 220549 220677 -202107670 + MER67C LTR ERV1 8 136 -574 2255 101 3 3 chr4 221073 221369 -202106978 - AluSc SINE Alu -13 296 1 707 302 38 18 chr4 221567 222039 -202106308 - L1MB2 LINE L1 -4452 1930 1373 2243 92 0 10 chr4 222039 222332 -202106015 - AluY SINE Alu -17 294 5 1568 248 75 51 chr4 222359 222717 -202105630 - L1 LINE L1 -2993 3041 2693 2277 84 3 7 chr4 222717 223016 -202105331 + AluY SINE Alu 1 298 -13 1568 248 75 51 chr4 223016 223601 -202104746 - L1 LINE L1 -3341 2693 2075 482 280 84 2 chr4 223608 223928 -202104419 - MSTD LTR MaLR 0 396 1 233 245 32 0 chr4 223957 224051 -202104296 - L1 LINE L1 -3991 2044 1948 1434 228 0 24 chr4 224215 224513 -202103834 - AluJb SINE Alu -21 291 1 454 162 0 0 chr4 224565 224639 -202103708 - AluJo SINE Alu -178 134 61 2187 285 51 28 chr4 224793 225962 -202102385 - L1 LINE L1 -4732 1233 302 729 312 70 23 chr4 225964 226307 -202102040 - L1 LINE L1 -5501 454 96 1771 99 70 46 chr4 226334 226618 -202101729 - AluSq SINE Alu -22 291 1 488 267 30 86 chr4 227226 227470 -202100877 - L1MB2 LINE L1 -32 6139 5914 2397 66 0 27 chr4 227470 227771 -202100576 - AluY SINE Alu -18 293 1 488 267 30 86 chr4 227771 227829 -202100518 - L1MB2 LINE L1 -257 5914 5854 1265 52 204 5 chr4 227843 228054 -202100293 - LTR66 LTR ERVL 0 610 358 195 333 176 36 chr4 229033 229198 -202099149 + MER5A DNA MER1_type 2 189 0 193 340 103 19 chr4 229206 229362 -202098985 - MER5B DNA MER1_type -1 177 9 2239 93 0 30 chr4 229638 229939 -202098408 + AluY SINE Alu 1 292 -19 2010 155 0 7 chr4 230892 231196 -202097151 - AluSx SINE Alu -10 302 1 1009 176 11 0 chr4 231663 231850 -202096497 + MER30B DNA MER1_type 1 189 -1 2400 81 7 0 chr4 231981 232289 -202096058 + AluSx SINE Alu 1 310 -2 374 216 119 46 chr4 232384 232463 -202095884 - MER6B DNA MER2_type -657 208 136 1531 112 9 5 chr4 232463 232677 -202095670 + AluSg SINE Alu 1 215 -95 374 216 119 46 chr4 232677 232791 -202095556 - MER6B DNA MER2_type -729 136 1 2355 196 111 42 chr4 232822 233541 -202094806 - L1MA9 LINE L1 -26 6174 5406 3060 229 55 38 chr4 233551 234529 -202093818 - L1MA9 LINE L1 -816 5218 4215 705 211 0 0 chr4 234529 234662 -202093685 + FLAM_C SINE Alu 1 133 0 3060 229 55 38 chr4 234662 234889 -202093458 - L1MA9 LINE L1 -1819 4215 3993 984 303 52 65 chr4 234951 235686 -202092661 - L1MA9 LINE L1 -5106 849 125 * 1742 271 69 24 chr4 235684 235951 -202092396 - L1MB2 LINE L1 -180 5991 5737 2070 189 36 12 chr4 235951 236369 -202091978 + MSTA LTR MaLR 1 428 0 1742 271 69 24 chr4 236369 236453 -202091894 - L1MB2 LINE L1 -434 5737 5658 2302 111 0 0 chr4 236453 236751 -202091596 + AluSx SINE Alu 1 298 -14 1742 271 69 24 chr4 236751 237803 -202090544 - L1MB2 LINE L1 -513 5658 4532 242 245 20 0 chr4 237832 237934 -202090413 - L1MB2 LINE L1 -3280 2866 2763 * 598 133 0 70 chr4 237933 238061 -202090286 + L1PA13 LINE L1 6035 6153 -10 671 214 24 12 chr4 238087 238255 -202090092 - L1MB2 LINE L1 -153 6018 5849 2261 96 10 3 chr4 238258 238561 -202089786 + AluSx SINE Alu 1 305 -7 238 204 0 0 chr4 238564 238613 -202089734 - L1MB2 LINE L1 -427 5741 5693 327 321 36 7 chr4 238636 238776 -202089571 - L1 LINE L1 -1291 4855 4712 25 0 0 0 chr4 239512 239537 -202088810 + AT_rich Low_complexity Low_complexity 1 25 0 22 35 0 0 chr4 239690 239719 -202088628 + AT_rich Low_complexity Low_complexity 1 29 0 4813 186 58 16 chr4 239719 240208 -202088139 - L1MA3 LINE L1 0 6193 5726 2085 111 0 23 chr4 240208 240344 -202088003 + AluSx SINE Alu 1 139 -173 2404 61 3 0 chr4 240344 240640 -202087707 + AluY SINE Alu 1 297 -14 2085 111 0 23 chr4 240640 240809 -202087538 + AluSx SINE Alu 139 299 -13 4813 186 58 16 chr4 240809 242236 -202086111 - L1MA3 LINE L1 -467 5726 4170 2193 101 0 20 chr4 242236 242532 -202085815 - AluSx SINE Alu -22 290 1 4813 186 58 16 chr4 242532 242739 -202085608 - L1MA3 LINE L1 -2023 4170 3973 2355 90 3 7 chr4 243073 243383 -202084964 - AluSc SINE Alu 0 309 1 198 0 0 0 chr4 243583 243605 -202084742 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 1174 223 151 20 chr4 244747 245249 -202083098 - MER92B LTR ERV1 -10 626 59 788 253 93 27 chr4 245290 245622 -202082725 + MER21B LTR ERV1 403 756 -107 1530 197 0 21 chr4 245673 245962 -202082385 + AluJb SINE Alu 7 289 -23 185 0 40 0 chr4 246028 246053 -202082294 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1384 245 90 23 chr4 246820 247511 -202080836 - L1MA3 LINE L1 -2963 3071 2335 575 295 27 0 chr4 248035 248218 -202080129 - MSTD LTR MaLR -208 188 1 235 250 87 34 chr4 248219 248483 -202079864 - L1M4c LINE L1 -3965 2419 2142 1607 170 33 14 chr4 248512 248788 -202079559 - AluJb SINE Alu -31 281 1 387 203 0 0 chr4 248839 248913 -202079434 - AluJo SINE Alu -168 134 61 713 266 45 51 chr4 248982 249490 -202078857 - L1M4c LINE L1 -4348 2034 1472 1182 122 0 10 chr4 249539 249735 -202078612 - L1MA2 LINE L1 0 6304 6111 2028 287 63 22 chr4 249757 251001 -202077346 - L1MA3 LINE L1 -4501 1534 344 391 334 40 0 chr4 251012 251268 -202077079 - L1M4c LINE L1 -5224 1079 898 724 308 69 27 chr4 251338 251673 -202076674 - L1MA3 LINE L1 -5606 349 1 1878 131 14 3 chr4 252049 252352 -202075995 + AluSp SINE Alu 1 306 0 2332 81 0 16 chr4 252526 252835 -202075512 + AluY SINE Alu 1 304 -7 4103 200 17 52 chr4 253027 254027 -202074320 + LTR5 LTR ERVK 5 969 0 1002 145 65 11 chr4 254027 254213 -202074134 + HERVK LTR ERVK 1 196 -7047 14317 176 17 10 chr4 254234 257036 -202071311 + HERVK LTR ERVK 893 3714 -3529 630 85 0 11 chr4 257037 257131 -202071216 - Alu SINE Alu 0 311 219 1550 136 16 0 chr4 257131 257388 -202070959 + HERVK LTR ERVK 3697 3957 -3286 2376 72 0 3 chr4 257510 257803 -202070544 + AluY SINE Alu 1 292 -19 500 245 141 12 chr4 257845 258008 -202070339 + MIR SINE MIR 4 187 -75 2214 108 0 0 chr4 258410 258705 -202069642 + AluY SINE Alu 1 295 -16 899 139 36 0 chr4 260052 260217 -202068130 + L1MA3 LINE L1 6127 6297 -8 2324 108 0 0 chr4 261101 261408 -202066939 - AluSp SINE Alu -6 307 1 2429 82 3 3 chr4 265422 265726 -202062621 - AluY SINE Alu -7 304 1 622 287 56 31 chr4 266117 266613 -202061734 + L1M4c LINE L1 1288 1945 -4618 2126 142 0 0 chr4 266819 267121 -202061226 - AluSg SINE Alu -8 302 1 2100 119 20 0 chr4 267126 267428 -202060919 - AluSc SINE Alu -1 308 1 907 294 29 26 chr4 268066 268518 -202059829 - L1MB2 LINE L1 -70 6337 5885 248 268 0 24 chr4 268561 268643 -202059704 - L1MB2 LINE L1 -1022 5360 5281 * 292 187 8 12 chr4 268641 268723 -202059624 - L1MA6 LINE L1 -359 5941 5857 926 203 48 0 chr4 268840 269067 -202059280 - L1MA6 LINE L1 -725 5575 5338 1529 90 75 0 chr4 269070 269282 -202059065 + AluSq SINE Alu 3 230 -83 5438 141 30 47 chr4 269282 270371 -202057976 - MER11C LTR ERVK 0 1071 1 482 151 12 0 chr4 270371 270457 -202057890 + AluSq SINE Alu 225 311 -2 2756 226 65 16 chr4 270457 271362 -202056985 - L1MA6 LINE L1 -801 5345 4396 697 246 11 16 chr4 271366 271549 -202056798 + L1 LINE L1 3910 4091 -2055 2117 136 3 0 chr4 271608 271909 -202056438 + AluSx SINE Alu 6 307 -5 962 296 49 2 chr4 272193 272663 -202055684 - L1MB2 LINE L1 -5 6166 5675 515 286 61 10 chr4 272665 272962 -202055385 - L1MB2 LINE L1 -1295 5087 4776 385 246 97 66 chr4 272990 273318 -202055029 - L1MB2 LINE L1 -3272 3110 2794 2297 103 0 0 chr4 273318 273619 -202054728 + AluY SINE Alu 1 301 -10 385 246 97 66 chr4 273619 273692 -202054655 - L1MB2 LINE L1 -3588 2794 2725 207 0 0 0 chr4 273692 273715 -202054632 + (CA)n Simple_repeat Simple_repeat 2 24 0 385 246 97 66 chr4 273715 274242 -202054105 - L1MB2 LINE L1 -3657 2725 2156 626 313 91 11 chr4 274426 274927 -202053420 - L1MB2 LINE L1 -4456 1926 1315 521 315 95 20 chr4 274942 275288 -202053059 - L1MB2 LINE L1 -4866 1447 1076 1053 216 59 37 chr4 276903 277278 -202051069 - SVA Other Other -540 846 464 824 216 78 25 chr4 278387 278806 -202049541 - L1MA8 LINE L1 -5 6286 5773 2146 128 7 0 chr4 278908 279198 -202049149 - AluSg SINE Alu -18 292 1 498 295 135 5 chr4 279205 279398 -202048949 - MIR SINE MIR -14 248 31 7461 66 28 2 chr4 279525 280507 -202047840 + LTR13 LTR ERVK 1 1007 0 425 289 54 31 chr4 280864 281124 -202047223 + LTR60-int LTR ERV1 3959 4864 -2305 653 304 57 59 chr4 281494 282074 -202046273 + LTR60-int LTR ERV1 5343 6216 -1887 209 59 59 0 chr4 282775 282809 -202045538 + T-rich Low_complexity Low_complexity 2 37 0 263 156 0 0 chr4 282953 282998 -202045349 - Alu SINE Alu -256 45 1 517 358 47 22 chr4 284359 284809 -202043538 + LTR60-int LTR ERV1 6464 6924 -281 1971 214 58 46 chr4 285030 285578 -202042769 + LTR60 LTR ERV1 2 556 -30 242 227 30 76 chr4 285466 285598 -202042749 + TAR1 Satellite telomeric 60 185 -1926 * 1929 135 11 0 chr4 286519 286801 -202041546 + AluSc SINE Alu 1 285 -24 380 298 3 12 chr4 286869 287107 -202041240 + T-rich Low_complexity Low_complexity 1 235 0 2665 222 113 13 chr4 287246 287520 -202040827 - L1 LINE L1 -795 5351 5106 2357 93 0 0 chr4 287520 287820 -202040527 - AluSg SINE Alu -10 300 1 2665 222 113 13 chr4 287820 288401 -202039946 - L1 LINE L1 -1040 5106 4410 735 200 41 18 chr4 288433 288603 -202039744 + L1 LINE L1 3918 4091 -2055 420 70 0 99 chr4 288670 288741 -202039606 + Alu SINE Alu 1 64 -254 2356 78 0 0 chr4 288950 289267 -202039080 - AluY SINE Alu 0 317 1 345 360 56 27 chr4 289505 289900 -202038447 + HERV30 LTR ERV1 4698 5862 -2011 620 327 40 32 chr4 291965 292341 -202036006 + HERV30 LTR ERV1 6546 6924 -281 1909 224 63 35 chr4 292549 293090 -202035257 + LTR60 LTR ERV1 1 556 -30 357 248 67 0 chr4 293186 293291 -202035056 - L1MB2 LINE L1 -167 6004 5893 289 156 16 0 chr4 293783 293847 -202034500 + L1MA2 LINE L1 6121 6185 -119 1231 117 0 126 chr4 293847 293891 -202034456 + AluSp SINE Alu 100 148 -165 2276 61 7 4 chr4 293891 294169 -202034178 + AluY SINE Alu 2 280 -31 1231 117 0 126 chr4 294169 294354 -202033993 + AluSp SINE Alu 148 300 -13 539 141 52 37 chr4 294354 294489 -202033858 + L1MA3 LINE L1 6169 6305 0 373 195 0 3 chr4 294711 294785 -202033562 + AluS SINE Alu 1 65 -238 2824 215 76 15 chr4 294887 295934 -202032413 - L1MB2 LINE L1 -743 5403 4396 728 251 11 16 chr4 295935 296122 -202032225 + L1 LINE L1 3907 4092 -2054 525 305 106 13 chr4 296447 296909 -202031438 - L1MB2 LINE L1 -1 6406 5902 732 286 74 14 chr4 296933 297608 -202030739 - L1MB2 LINE L1 -1332 5050 2709 525 220 118 52 chr4 297863 298268 -202030079 - L1MB2 LINE L1 -3897 2487 2056 777 280 46 41 chr4 298446 298899 -202029448 - L1M4c LINE L1 -4633 1751 1317 324 336 51 43 chr4 299532 299788 -202028559 - L1M4c LINE L1 -5628 675 418 2219 22 7 11 chr4 302048 302323 -202026024 - AluYa5 SINE Alu -1 310 37 2238 103 0 0 chr4 302633 302933 -202025414 - AluY SINE Alu -10 301 2 578 208 9 123 chr4 353507 353719 -201974628 - AluJb SINE Alu -115 197 10 652 265 69 26 chr4 353728 354075 -201974272 + L1 LINE L1 4308 4669 -1477 2135 61 18 4 chr4 354088 354395 -201973952 + AluY SINE Alu 1 311 0 1033 198 52 71 chr4 354413 354737 -201973610 + L1MA9 LINE L1 5969 6286 -26 369 236 133 15 chr4 354764 354945 -201973402 + MER6 DNA MER2_type -65 861 -4 200 216 0 0 chr4 355094 355131 -201973216 - MIR SINE MIR -17 245 209 576 134 0 0 chr4 355184 355266 -201973081 - MER30B DNA MER1_type 0 190 109 2086 93 10 10 chr4 355267 355569 -201972778 + AluSc SINE Alu 1 302 -7 1623 216 74 13 chr4 355572 356159 -201972188 - MER67C LTR ERV1 -31 679 1 350 295 79 44 chr4 356843 357204 -201971143 - MER21B LTR ERV1 -75 856 416 346 276 48 28 chr4 357236 357381 -201970966 + MER93a LTR ERV1 244 391 -11 1947 106 34 0 chr4 358082 358374 -201969973 - AluSq SINE Alu -11 302 1 216 254 0 0 chr4 358476 358535 -201969812 + (CACG)n Simple_repeat Simple_repeat 1 59 0 431 218 92 0 chr4 358652 358794 -201969553 - MER33 DNA MER1_type -14 349 195 229 269 0 0 chr4 358795 358847 -201969500 + LTR30 LTR ERV1 1 52 -670 808 136 8 15 chr4 358847 358979 -201969368 + LTR12 LTR ERV1 53 183 -531 279 253 30 20 chr4 359103 359202 -201969145 + LTR30 LTR ERV1 544 643 -79 678 122 20 0 chr4 359204 359302 -201969045 + LTR12 LTR ERV1 615 714 0 2374 72 0 3 chr4 359324 359629 -201968718 + AluY SINE Alu 2 305 -6 451 287 26 0 chr4 359648 359763 -201968584 - MER33 DNA MER1_type -206 118 1 693 191 52 111 chr4 359967 360127 -201968220 - MER61D LTR ERV1 -17 732 564 2048 96 7 13 chr4 360127 360428 -201967919 - AluSq SINE Alu -3 310 12 693 191 52 111 chr4 360428 360474 -201967873 - MER61D LTR ERV1 -185 564 340 3807 132 20 0 chr4 361149 361737 -201966610 - MER51C LTR ERV1 0 640 1 1219 275 123 24 chr4 361873 362335 -201966012 - MLT1H LTR MaLR 0 549 34 2006 123 3 3 chr4 362335 362636 -201965711 - AluSq SINE Alu -12 301 1 1219 275 123 24 chr4 362636 362667 -201965680 - MLT1H LTR MaLR -515 34 7 4869 194 23 6 chr4 362754 364189 -201964158 + L1PA16 LINE L1 4705 6162 -4 302 255 114 46 chr4 365698 365838 -201962509 + L1ME1 LINE L1 1087 1216 -5180 195 42 0 0 chr4 365838 365862 -201962485 + (TA)n Simple_repeat Simple_repeat 2 25 0 302 255 114 46 chr4 365862 365984 -201962363 + L1ME1 LINE L1 1216 1367 -5029 1455 232 81 45 chr4 366040 366310 -201962037 + L1ME1 LINE L1 2946 3205 -3010 279 0 0 0 chr4 366310 366341 -201962006 + (CA)n Simple_repeat Simple_repeat 2 32 0 1455 232 81 45 chr4 366341 366711 -201961636 + L1ME1 LINE L1 3205 3609 -2606 2702 216 77 64 chr4 366721 366988 -201961359 + L1ME1 LINE L1 5108 5370 -865 3412 148 60 5 chr4 366988 367590 -201960757 - MER41B LTR ERV1 0 635 1 2702 216 77 64 chr4 367590 368389 -201959958 + L1ME1 LINE L1 5370 6185 -50 629 189 9 0 chr4 368389 368500 -201959847 - FRAM SINE Alu -19 157 46 339 149 0 1 chr4 368518 368657 -201959690 + Alu SINE Alu 244 372 0 1674 153 13 13 chr4 368853 369153 -201959194 - AluSx SINE Alu -12 300 1 243 319 14 0 chr4 369466 369535 -201958812 - L2 LINE L2 -82 3190 3121 1623 203 56 43 chr4 369568 370011 -201958336 + LTR2 LTR ERV1 1 449 0 1522 147 25 81 chr4 370913 371282 -201957065 - MER4A LTR ERV1 -2 662 256 464 133 44 11 chr4 371277 371367 -201956980 - MER4A LTR ERV1 -566 98 6 * 266 241 169 96 chr4 371563 371812 -201956535 + L2 LINE L2 2630 2896 -418 202 188 31 115 chr4 372261 372357 -201955990 - MIR SINE MIR -82 126 39 802 235 270 27 chr4 372918 373659 -201954688 - L2 LINE L2 -5 3308 2364 216 246 18 0 chr4 373721 373778 -201954569 + L2 LINE L2 2921 2978 -294 279 246 114 18 chr4 374003 374117 -201954230 + MIR SINE MIR 18 142 -66 21 0 0 0 chr4 374634 374655 -201953692 + GC_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr4 374939 374961 -201953386 + GC_rich Low_complexity Low_complexity 1 22 0 40 59 0 0 chr4 377924 377992 -201950355 + AT_rich Low_complexity Low_complexity 1 68 0 390 268 117 0 chr4 378195 378320 -201950027 - MIR SINE MIR -63 145 24 522 243 185 14 chr4 378347 378569 -201949778 + MIR SINE MIR 2 261 -1 249 275 29 0 chr4 379458 379527 -201948820 + (TCCA)n Simple_repeat Simple_repeat 3 73 0 322 200 156 22 chr4 379984 380074 -201948273 + MIR SINE MIR 44 145 -63 2704 275 20 12 chr4 380295 381045 -201947302 + L1PA12 LINE L1 524 1279 -6302 1705 141 121 0 chr4 381045 381358 -201946989 - MER61C LTR ERV1 0 434 84 10541 125 22 22 chr4 381381 382835 -201945512 - MER61C-int LTR ERV1 -9 5208 3755 2029 83 0 4 chr4 382835 383089 -201945258 + AluY SINE Alu 41 293 -18 10541 125 22 22 chr4 383089 383129 -201945218 - MER61C-int LTR ERV1 -1462 3755 3716 2146 112 0 27 chr4 383129 383424 -201944923 + AluSg SINE Alu 1 287 -23 10541 125 22 22 chr4 383424 385062 -201943285 - MER61C-int LTR ERV1 -1501 3716 1971 1194 170 48 15 chr4 385040 385311 -201943036 - MER61C-int LTR ERV1 -3577 1640 1361 * 4143 142 81 62 chr4 385306 385438 -201942909 - MER61C-int LTR ERV1 -4004 1213 1085 2163 122 0 0 chr4 385438 385732 -201942615 + AluSc SINE Alu 1 294 -15 270 81 0 0 chr4 385732 385769 -201942578 + (TG)n Simple_repeat Simple_repeat 2 38 0 4143 142 81 62 chr4 385769 385983 -201942364 - MER61C-int LTR ERV1 -4132 1085 877 2023 130 20 0 chr4 385983 386275 -201942072 - AluSg SINE Alu -12 298 1 4143 142 81 62 chr4 386275 387091 -201941256 - MER61C-int LTR ERV1 -4340 877 4 1027 151 53 7 chr4 387099 387208 -201941139 - MER61C LTR ERV1 -6 419 317 204 40 0 0 chr4 387208 387233 -201941114 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1027 151 53 7 chr4 387233 387422 -201940925 - MER61C LTR ERV1 -108 317 84 248 172 0 52 chr4 387437 387495 -201940852 + L1PA12 LINE L1 736 790 -6791 * 1257 196 39 15 chr4 387476 387780 -201940567 + L1PA12 LINE L1 1358 2460 -5124 1474 182 56 25 chr4 388112 388470 -201939877 + THE1C LTR MaLR 1 369 -6 8897 145 62 3 chr4 388475 389967 -201938380 + THE1C-int LTR MaLR 1 1580 0 518 185 23 39 chr4 389967 390097 -201938250 + THE1C LTR MaLR 1 128 -247 1706 145 0 0 chr4 390097 390338 -201938009 - AluSg SINE Alu -69 241 1 394 159 0 0 chr4 390338 390407 -201937940 + MSTA LTR MaLR 360 428 0 239 218 0 64 chr4 390615 390693 -201937654 + T-rich Low_complexity Low_complexity 2 74 0 21 71 0 0 chr4 390766 390808 -201937539 + AT_rich Low_complexity Low_complexity 1 42 0 203 158 0 0 chr4 391090 391128 -201937219 + (CA)n Simple_repeat Simple_repeat 1 38 0 923 292 49 35 chr4 391148 391796 -201936551 + L1MB2 LINE L1 4539 5195 -951 1299 252 47 70 chr4 391883 392146 -201936201 + L1MB2 LINE L1 5341 5608 -563 1847 200 0 0 chr4 392146 392446 -201935901 + AluJb SINE Alu 12 311 -1 1299 252 47 70 chr4 392446 392796 -201935551 + L1MB2 LINE L1 5608 5940 -231 23 0 0 0 chr4 393795 393818 -201934529 + AT_rich Low_complexity Low_complexity 1 23 0 733 168 37 47 chr4 394341 394367 -201933980 + L1MA3 LINE L1 6118 6143 -162 2237 112 0 3 chr4 394367 394670 -201933677 + AluSg SINE Alu 1 302 -8 733 168 37 47 chr4 394670 394833 -201933514 + L1MA3 LINE L1 6143 6305 0 257 371 41 22 chr4 396743 397010 -201931337 + L1MB2 LINE L1 7 278 -5613 302 310 180 4 chr4 397385 397630 -201930717 + L1MB2 LINE L1 369 656 -5316 723 285 88 13 chr4 397630 398057 -201930290 + L1MB2 LINE L1 903 1513 -4638 348 313 125 6 chr4 398233 398409 -201929938 + L1MB2 LINE L1 1627 1823 -4149 464 274 78 32 chr4 398499 398718 -201929629 + L1MB2 LINE L1 1816 2044 -3928 2360 87 10 13 chr4 398734 399045 -201929302 - AluY SINE Alu -1 310 1 624 284 50 27 chr4 399228 399309 -201929038 + L1MB2 LINE L1 2204 2282 -3688 186 43 0 0 chr4 399309 399332 -201929015 + (TG)n Simple_repeat Simple_repeat 2 24 0 624 284 50 27 chr4 399332 399694 -201928653 + L1MB2 LINE L1 2282 2657 -3313 2349 107 3 3 chr4 399699 400009 -201928338 + AluSp SINE Alu 1 310 -3 463 289 63 14 chr4 400089 400373 -201927974 + L1MB2 LINE L1 4373 4670 -1300 918 278 72 11 chr4 400386 400828 -201927519 + L1MB2 LINE L1 5499 5967 -28 2690 43 3 6 chr4 401199 401548 -201926799 + L1PA8 LINE L1 5805 6152 -20 2026 83 72 10 chr4 401549 401916 -201926431 + LTR7 LTR ERV1 1 450 0 571 177 24 79 chr4 401936 402063 -201926284 - L1 LINE L1 -2085 4061 3943 2312 86 14 0 chr4 402063 402354 -201925993 + AluSp SINE Alu 1 295 -18 571 177 24 79 chr4 402354 402390 -201925957 - L1 LINE L1 -2203 3943 3907 1578 207 58 50 chr4 402405 402942 -201925405 + L1MB2 LINE L1 4400 4940 -1206 1084 266 62 23 chr4 402944 403390 -201924957 + L1MB2 LINE L1 5662 6130 -41 1890 118 93 0 chr4 403390 403670 -201924677 + AluSp SINE Alu 1 306 -7 1084 266 62 23 chr4 403670 403708 -201924639 + L1MB2 LINE L1 6130 6165 -6 2270 70 0 0 chr4 404075 404382 -201923965 + AluY SINE Alu 1 307 0 2342 267 76 30 chr4 404393 406002 -201922345 + L1MA3 LINE L1 357 1859 -4176 369 173 0 13 chr4 406074 406149 -201922198 + AluJo SINE Alu 61 134 -168 1594 211 0 14 chr4 406188 406473 -201921874 + AluJb SINE Alu 1 281 -31 258 213 0 0 chr4 406700 406761 -201921586 + L1MA3 LINE L1 1969 2029 -4006 933 283 92 17 chr4 406806 407163 -201921184 + MSTD LTR MaLR 1 384 -12 407 289 66 17 chr4 407173 407460 -201920887 + L1MA3 LINE L1 2071 2371 -3663 592 111 10 20 chr4 407460 407559 -201920788 + MER4A LTR ERV1 1 98 -566 1526 117 27 94 chr4 407608 407906 -201920441 + MER4A LTR ERV1 372 649 -15 392 235 138 18 chr4 407912 408129 -201920218 + L1MA3 LINE L1 2374 2616 -3418 1188 184 28 14 chr4 408138 408356 -201919991 - AluJb SINE Alu -91 221 1 733 264 69 39 chr4 408374 408740 -201919607 - MER21B LTR ERV1 -83 848 402 1063 246 110 25 chr4 408776 409278 -201919069 + MER92B LTR ERV1 46 402 -10 3309 217 64 5 chr4 410989 411747 -201916600 + L1MA3 LINE L1 3973 4793 -1241 1891 163 7 3 chr4 411747 412041 -201916306 + AluSx SINE Alu 1 295 -17 3309 217 64 5 chr4 412041 412172 -201916175 + L1MA3 LINE L1 4793 4915 -1119 287 104 0 21 chr4 412172 412220 -201916127 + LTR22B LTR ERVK 1 47 -445 1652 104 4 24 chr4 412230 412480 -201915867 + LTR22B LTR ERVK 248 492 0 5132 177 27 19 chr4 412483 413764 -201914583 + L1MA3 LINE L1 4913 6192 -1 26 0 0 0 chr4 413764 413790 -201914557 + AT_rich Low_complexity Low_complexity 1 26 0 263 350 45 29 chr4 413813 414056 -201914291 + L1MB2 LINE L1 35 281 -5610 1997 81 78 0 chr4 414223 414494 -201913853 + AluY SINE Alu 6 297 -14 443 305 85 20 chr4 414497 414697 -201913650 + L1MB2 LINE L1 4463 4675 -1295 899 270 38 15 chr4 414699 415040 -201913307 + L1MB2 LINE L1 5499 5847 -148 558 168 50 0 chr4 415075 415194 -201913153 - L1PA13 LINE L1 -2 6161 6037 1335 281 45 16 chr4 415334 415939 -201912408 + L1MB1 LINE L1 4535 5156 -990 1886 231 91 12 chr4 416030 416416 -201911931 + L1MB1 LINE L1 5283 5744 -424 2151 186 26 7 chr4 416416 416836 -201911511 - MSTA LTR MaLR 0 428 1 1886 231 91 12 chr4 416836 417106 -201911241 + L1MB1 LINE L1 5744 5991 -177 556 324 18 77 chr4 417104 417561 -201910786 + L1M3a LINE L1 125 554 -5401 * 306 226 0 0 chr4 417703 417765 -201910582 + MER6B DNA MER2_type 3 64 -212 572 181 0 0 chr4 417815 417909 -201910438 - AluS SINE Alu -217 96 3 477 228 58 92 chr4 417914 418029 -201910318 - L1 LINE L1 -1717 4317 4200 599 186 0 64 chr4 418029 418169 -201910178 + FLAM_C SINE Alu 1 131 -2 477 228 58 92 chr4 418169 418412 -201909935 - L1 LINE L1 -1834 4200 3971 328 291 0 18 chr4 418526 418636 -201909711 - L1 LINE L1 -5149 806 699 1418 102 0 11 chr4 418644 418830 -201909517 + AluSg/x SINE Alu 103 286 -24 23 0 0 0 chr4 418837 418860 -201909487 + AT_rich Low_complexity Low_complexity 1 23 0 2591 233 50 25 chr4 418897 419778 -201908569 + L1MA9 LINE L1 4464 5366 -780 1758 199 72 47 chr4 419784 420488 -201907859 + L1MA9 LINE L1 5521 6277 -35 420 230 110 31 chr4 420526 420717 -201907630 + MER6B DNA MER2_type 4 209 -1 1751 99 119 58 chr4 420947 421240 -201907107 + AluSx SINE Alu 1 311 -1 1106 123 0 64 chr4 421267 421470 -201906877 - MER30B DNA MER1_type 0 190 1 713 71 0 0 chr4 421673 421771 -201906576 + L1PA2 LINE L1 6057 6154 -1 181 174 92 184 chr4 423759 423868 -201904479 - MIR SINE MIR -9 253 155 195 244 0 0 chr4 424755 424796 -201903551 + L2 LINE L2 3191 3231 -82 2553 144 41 0 chr4 425525 425941 -201902406 - LTR56 LTR ERV1 -12 433 1 2064 211 145 21 chr4 426410 427037 -201901310 - MER67C LTR ERV1 -5 705 1 2311 67 3 24 chr4 427194 427492 -201900855 + AluY SINE Alu 1 292 -19 385 257 82 79 chr4 428028 428382 -201899965 - MER21A LTR ERV1 -75 856 502 315 298 8 16 chr4 428402 428526 -201899821 + MER93a LTR ERV1 244 366 -36 297 230 0 0 chr4 429343 429417 -201898930 + (CA)n Simple_repeat Simple_repeat 2 75 0 23 0 0 0 chr4 429533 429556 -201898791 + AT_rich Low_complexity Low_complexity 1 23 0 626 209 71 112 chr4 429559 429855 -201898492 - MER33 DNA MER1_type -40 284 1 739 205 32 30 chr4 430061 430269 -201898078 - MER61D LTR ERV1 -17 743 338 3504 129 51 5 chr4 430935 431508 -201896839 - MER51C LTR ERV1 0 640 2 940 175 30 0 chr4 431520 431686 -201896661 - MER67C LTR ERV1 -259 451 281 2548 63 0 3 chr4 431777 432080 -201896267 - AluY SINE Alu -9 302 1 43 112 0 0 chr4 433169 433366 -201894981 + AT_rich Low_complexity Low_complexity 1 197 0 291 242 0 61 chr4 433785 433884 -201894463 - MER67C LTR ERV1 -477 233 141 2223 113 0 0 chr4 434617 435082 -201893265 - AluSg SINE Alu 0 465 1 725 287 85 7 chr4 435140 435433 -201892914 - MER21B LTR ERV1 -125 738 423 2421 97 0 3 chr4 435869 436177 -201892170 - AluSq SINE Alu -6 307 1 1901 121 3 25 chr4 436477 436759 -201891588 + AluSq SINE Alu 28 303 -10 347 214 256 0 chr4 437465 437587 -201890760 + MIR SINE MIR 32 179 -57 2218 96 4 0 chr4 437796 438117 -201890230 + AluSp SINE Alu 3 324 0 456 283 65 27 chr4 438991 439175 -201889172 - MARNA DNA Mariner -196 390 200 29098 74 8 67 chr4 439594 440783 -201887564 + L1P LINE L1 11 1267 -4879 5550 153 20 17 chr4 440783 441733 -201886614 + LTR5 LTR ERVK 17 969 0 29098 74 8 67 chr4 441733 444876 -201883471 + L1P LINE L1 1267 4092 -2054 182 319 103 69 chr4 445139 445371 -201882976 + MIR SINE MIR 14 253 -9 6393 93 4 15 chr4 446448 446939 -201881408 + L1PA14 LINE L1 4872 5367 -794 2383 95 0 0 chr4 446939 447243 -201881104 + AluY SINE Alu 2 305 -6 6393 93 4 15 chr4 447243 448046 -201880301 + L1PA14 LINE L1 5367 6161 0 9261 58 4 2 chr4 450376 452317 -201876030 - L1PA5 LINE L1 0 6154 4207 201 132 0 0 chr4 453806 453844 -201874503 + (GA)n Simple_repeat Simple_repeat 1 38 0 23 0 0 0 chr4 455097 455120 -201873227 + AT_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr4 455262 455282 -201873065 + (CAG)n Simple_repeat Simple_repeat 3 22 0 272 304 22 0 chr4 455451 455543 -201872804 - MIR SINE MIR -60 148 55 890 285 14 0 chr4 456266 456487 -201871860 - MER58A DNA MER1_type 0 224 1 282 74 56 0 chr4 456615 456669 -201871678 + (TAGA)n Simple_repeat Simple_repeat 2 58 0 694 303 51 63 chr4 458289 458701 -201869646 - MLT1I LTR MaLR 0 409 3 318 260 0 10 chr4 458948 459140 -201869207 + (TTAGGG)n Simple_repeat Simple_repeat 1 190 0 1646 168 9 7 chr4 459826 460171 -201868176 - MER4A LTR ERV1 0 664 261 667 121 0 10 chr4 460171 460270 -201868077 - MER4A LTR ERV1 -566 98 1 4233 208 177 73 chr4 461152 461677 -201866670 - L1MC3 LINE L1 -1 7784 7315 279 219 14 14 chr4 461677 461750 -201866597 - MLT1F1 LTR MaLR -450 117 45 4233 208 177 73 chr4 461750 462247 -201866100 - L1MC3 LINE L1 -470 7315 6871 3531 208 25 62 chr4 462247 463248 -201865099 - LTR5 LTR ERVK 0 969 6 4233 208 177 73 chr4 463248 463576 -201864771 - L1MC3 LINE L1 -914 6871 6578 1757 184 36 65 chr4 463576 464021 -201864326 - MSTB1 LTR MaLR 0 432 1 4233 208 177 73 chr4 464021 464429 -201863918 - L1MC3 LINE L1 -1207 6578 5762 270 215 15 100 chr4 464576 464669 -201863678 - LTR37A LTR ERV1 -304 122 41 1612 152 98 0 chr4 464669 464933 -201863414 - AluJb SINE Alu -22 290 1 270 215 15 100 chr4 464933 464969 -201863378 - LTR37A LTR ERV1 -385 41 4 1875 189 29 11 chr4 464985 465360 -201862987 - MER31-int LTR ERV1 -696 4240 3859 1297 263 47 8 chr4 465401 465762 -201862585 - LTR10C LTR ERV1 -29 562 188 225 0 0 0 chr4 465784 465809 -201862538 + (CA)n Simple_repeat Simple_repeat 2 26 0 681 174 12 81 chr4 465881 466053 -201862294 - MER31-int LTR ERV1 -1064 3872 3713 7545 34 0 3 chr4 466154 467508 -201860839 - L1PA4 LINE L1 -3 6152 4811 2462 213 47 72 chr4 467508 468147 -201860200 - MER31-int LTR ERV1 -1207 3729 3112 2234 93 0 0 chr4 468147 468456 -201859891 - AluY SINE Alu 0 310 2 2462 213 47 72 chr4 468456 468626 -201859721 - MER31-int LTR ERV1 -1824 3112 2939 1222 214 82 55 chr4 468640 469149 -201859198 - MER31-int LTR ERV1 -2705 2231 1709 1132 154 75 143 chr4 469158 469612 -201858735 + LTR60 LTR ERV1 127 549 -37 * 4151 137 75 166 chr4 469452 472081 -201856266 + TAR1 Satellite telomeric 1 2388 -233 1409 6 11 11 chr4 472081 472261 -201856086 + (TTAGGG)n Simple_repeat Simple_repeat 1 180 0 1857 272 70 19 chr4 672276 672344 -201656003 + L1M4 LINE L1 2197 2260 -3886 2060 120 0 7 chr4 672344 672652 -201655695 + AluSx SINE Alu 2 307 -5 1857 272 70 19 chr4 672652 673274 -201655073 + L1M4 LINE L1 2260 2922 -3224 1894 140 105 79 chr4 673410 673765 -201654582 + Tigger1 DNA MER2_type 1892 2236 -182 2131 109 0 10 chr4 673765 674068 -201654279 + AluSg SINE Alu 1 300 -10 1894 140 105 79 chr4 674068 674100 -201654247 + Tigger1 DNA MER2_type 2236 2266 -152 1851 173 0 7 chr4 674100 674406 -201653941 + AluJb SINE Alu 1 304 -8 1894 140 105 79 chr4 674406 674523 -201653824 + Tigger1 DNA MER2_type 2266 2410 -8 331 294 9 0 chr4 675009 675118 -201653229 + L1MEc LINE L1 636 745 -5651 281 75 0 0 chr4 675125 675165 -201653182 + Alu SINE Alu 1 40 -263 318 332 5 53 chr4 675335 675426 -201652921 + HAL1 LINE L1 1 80 -2427 2192 118 0 0 chr4 675426 675731 -201652616 + AluSg SINE Alu 1 305 -5 318 332 5 53 chr4 675731 675829 -201652518 + HAL1 LINE L1 80 181 -2326 286 261 85 39 chr4 676218 676371 -201651976 + HAL1 LINE L1 689 848 -1659 677 226 35 49 chr4 676471 676661 -201651686 - MER54B LTR ERVL -114 679 491 1851 126 10 7 chr4 676661 676954 -201651393 - AluSx SINE Alu -18 294 1 677 226 35 49 chr4 676954 676989 -201651358 - MER54B LTR ERVL -302 491 457 322 311 136 60 chr4 677390 678229 -201650118 - L1M2 LINE L1 -5578 1271 369 1370 249 68 66 chr4 679010 679112 -201649235 - L1M4 LINE L1 -876 5270 5170 1474 187 21 7 chr4 679112 679396 -201648951 + AluJo SINE Alu 1 288 -24 1370 249 68 66 chr4 679396 680076 -201648271 - L1M4 LINE L1 -976 5170 4487 707 82 21 0 chr4 680186 680283 -201648064 - AluSg/x SINE Alu -14 295 197 1761 111 0 8 chr4 680285 680529 -201647818 - AluSg SINE Alu -68 242 1 * 2033 113 7 20 chr4 680529 680829 -201647518 - AluSq SINE Alu -17 296 1 1166 131 0 17 chr4 680974 681150 -201647197 + AluJo SINE Alu 17 189 -123 726 226 0 20 chr4 681307 681453 -201646894 + AluJb SINE Alu 150 292 -20 22 70 0 0 chr4 681625 681668 -201646679 + GC_rich Low_complexity Low_complexity 1 43 0 211 272 27 34 chr4 681696 681843 -201646504 + (CCCCG)n Simple_repeat Simple_repeat 4 149 0 * 337 275 0 67 chr4 681745 681938 -201646409 + C-rich Low_complexity Low_complexity 1 180 0 22 56 0 0 chr4 681965 682001 -201646346 + GC_rich Low_complexity Low_complexity 1 36 0 25 31 0 0 chr4 682023 682055 -201646292 + GC_rich Low_complexity Low_complexity 1 32 0 478 172 57 0 chr4 685273 685430 -201642917 + (CAGAGA)n Simple_repeat Simple_repeat 1 166 0 2137 184 44 0 chr4 685603 686038 -201642309 - MER54B LTR ERVL -339 454 1 344 179 0 38 chr4 686073 686179 -201642168 + HAL1 LINE L1 1029 1130 -1377 2397 88 0 0 chr4 686179 686484 -201641863 + AluSx SINE Alu 1 305 -7 237 291 63 0 chr4 686484 686563 -201641784 + HAL1 LINE L1 2049 2132 -375 2417 76 0 3 chr4 687264 687568 -201640779 - AluSg SINE Alu -7 303 1 1337 153 19 0 chr4 687678 687894 -201640453 + AluJb SINE Alu 85 304 -8 189 0 0 0 chr4 688297 688318 -201640029 + (A)n Simple_repeat Simple_repeat 1 21 0 2203 90 3 13 chr4 688322 688623 -201639724 + AluSx SINE Alu 1 298 -14 385 234 46 46 chr4 691131 691306 -201637041 + (CAGCC)n Simple_repeat Simple_repeat 1 175 0 579 176 12 18 chr4 693131 693301 -201635046 + (TCTCTG)n Simple_repeat Simple_repeat 3 171 0 353 314 45 125 chr4 693940 694073 -201634274 - L1M4 LINE L1 -2972 3174 3032 2221 106 3 0 chr4 694073 694374 -201633973 - AluSp SINE Alu -11 302 1 2022 91 60 24 chr4 694382 694680 -201633667 - AluSg SINE Alu -1 309 1 353 314 45 125 chr4 694680 694730 -201633617 - L1M4 LINE L1 -3121 3025 2973 1323 199 64 18 chr4 694730 695012 -201633335 - AluJo SINE Alu -4 298 4 353 314 45 125 chr4 695012 695289 -201633058 - L1M4 LINE L1 -3173 2973 2742 407 349 88 0 chr4 695350 695542 -201632805 + MIR SINE MIR 7 215 -47 897 204 19 0 chr4 698098 698255 -201630092 - FRAM SINE Alu -6 160 1 2150 76 38 3 chr4 698283 698573 -201629774 + AluY SINE Alu 1 300 -11 1829 87 61 4 chr4 698576 698840 -201629507 + AluSq SINE Alu 1 279 -34 418 350 154 28 chr4 700270 700633 -201627714 - L1M4 LINE L1 -787 5359 4951 2174 93 13 7 chr4 700814 701116 -201627231 - AluSp SINE Alu -1 312 9 2033 125 0 7 chr4 701126 701422 -201626925 - AluSx SINE Alu -18 294 1 951 181 43 11 chr4 701522 701710 -201626637 - L1MB3 LINE L1 -1 6182 5989 270 316 118 0 chr4 701738 701874 -201626473 + L1MB8 LINE L1 6026 6177 -1 1670 145 71 18 chr4 702527 702810 -201625537 - AluJo SINE Alu -14 298 1 1228 207 13 53 chr4 702812 703098 -201625249 + L1ME1 LINE L1 4895 5164 -982 3543 154 71 119 chr4 703098 703694 -201624653 + MER21A LTR ERV1 1 533 -398 2210 119 0 0 chr4 703694 703997 -201624350 + AluSx SINE Alu 1 303 -9 3543 154 71 119 chr4 703997 704375 -201623972 + MER21A LTR ERV1 533 928 -3 1228 207 13 53 chr4 704375 704465 -201623882 + L1ME1 LINE L1 5164 5256 -890 941 88 0 0 chr4 704466 704591 -201623756 + AluSx SINE Alu 1 125 -188 189 171 0 0 chr4 704591 704626 -201623721 + (CATATA)n Simple_repeat Simple_repeat 4 38 0 263 221 23 0 chr4 704631 704717 -201623630 + L1MC4 LINE L1 6614 6701 -1341 832 157 0 0 chr4 704718 704852 -201623495 + AluSx SINE Alu 1 134 -178 207 162 0 0 chr4 704852 704889 -201623458 + (CATATA)n Simple_repeat Simple_repeat 2 38 0 246 218 51 0 chr4 704894 704972 -201623375 + L1MC4 LINE L1 6614 6695 -1347 1160 147 0 0 chr4 704972 705142 -201623205 + AluSx SINE Alu 123 292 -18 2175 92 0 30 chr4 705146 705450 -201622897 + AluSg SINE Alu 1 295 -15 481 154 86 8 chr4 705456 705573 -201622774 + L1ME1 LINE L1 5258 5383 -950 1103 221 24 4 chr4 705629 705883 -201622464 + Tigger3(Golem) DNA MER2_type 2771 3029 0 2010 241 52 10 chr4 705887 706496 -201621851 + L1ME1 LINE L1 5352 5986 -180 813 304 67 52 chr4 706592 706781 -201621566 + L1 LINE L1 2745 2930 -3216 2157 113 0 10 chr4 706781 707082 -201621265 + AluSg SINE Alu 1 298 -12 813 304 67 52 chr4 707082 707313 -201621034 + L1 LINE L1 2930 3171 -2975 762 310 21 7 chr4 707409 707502 -201620845 + MER7A DNA MER2_type 1 91 -2947 2147 61 40 24 chr4 707502 707798 -201620549 - AluY SINE Alu -10 301 1 1918 126 42 3 chr4 707798 708084 -201620263 - AluSx SINE Alu -15 297 1 762 310 21 7 chr4 708084 708276 -201620071 + MER7A DNA MER2_type 90 289 -57 644 354 51 60 chr4 708359 708858 -201619489 + L1 LINE L1 4208 4701 -1445 4368 157 22 1 chr4 709506 710244 -201618103 + L1MB3 LINE L1 5431 6183 0 5331 105 16 5 chr4 710249 711590 -201616757 + L1PA10 LINE L1 4724 6150 -18 2081 98 0 33 chr4 711590 711897 -201616450 - AluSq SINE Alu -16 297 1 1281 185 8 13 chr4 712099 712337 -201616010 + AluJb SINE Alu 1 237 -75 272 25 50 0 chr4 712344 712384 -201615963 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 322 381 59 23 chr4 712603 713107 -201615240 + L1 LINE L1 3081 3689 -2457 1141 309 127 35 chr4 713777 714157 -201614190 - L1ME1 LINE L1 -66 6100 5756 2542 59 0 0 chr4 714157 714462 -201613885 - AluY SINE Alu -6 305 1 1141 309 127 35 chr4 714462 714797 -201613550 - L1ME1 LINE L1 -410 5756 5319 2407 96 0 0 chr4 714797 715110 -201613237 - AluSq SINE Alu 0 313 1 627 202 0 0 chr4 715115 715219 -201613128 - FRAM SINE Alu -14 162 59 1928 134 7 3 chr4 716583 716874 -201611473 - AluJb SINE Alu -18 294 3 2252 78 0 10 chr4 717926 718221 -201610126 - AluY SINE Alu -19 292 1 617 185 92 0 chr4 718488 718607 -201609740 - FLAM_C SINE Alu -1 132 3 617 285 97 0 chr4 718738 718966 -201609381 - L1MC/D LINE L1 -586 5773 5524 2338 77 3 0 chr4 719278 719577 -201608770 - AluSx SINE Alu -12 300 1 1280 20 0 0 chr4 719595 719742 -201608605 - SVA Other Other 0 1386 1240 395 216 78 0 chr4 719745 719861 -201608486 - L1MC/D LINE L1 -817 5329 5205 1140 335 64 34 chr4 720069 720243 -201608104 - L1MC/D LINE L1 -1278 4868 4701 2392 55 3 0 chr4 720243 720534 -201607813 + AluY SINE Alu 1 292 -19 1140 335 64 34 chr4 720534 721144 -201607203 - L1MC/D LINE L1 -1445 4701 4061 2015 113 48 3 chr4 721166 721458 -201606889 + AluSx SINE Alu 1 305 -7 789 175 0 58 chr4 721471 721625 -201606722 - FRAM SINE Alu -24 152 8 734 231 95 27 chr4 722133 722354 -201605993 - AluJo SINE Alu -76 236 1 1243 271 60 17 chr4 722446 722516 -201605831 - L1MC/D LINE L1 -2211 3935 3869 528 114 13 0 chr4 722516 722595 -201605752 + MADE1 DNA Mariner 1 80 0 1243 271 60 17 chr4 722595 723060 -201605287 - L1MC/D LINE L1 -2277 3869 3377 236 368 129 21 chr4 723240 723580 -201604767 - L1MC/D LINE L1 -3010 3136 2760 310 299 17 0 chr4 723668 723785 -201604562 - L1MC/D LINE L1 -3538 2608 2490 724 213 0 7 chr4 725573 725714 -201602633 + AluJo SINE Alu 86 225 -87 716 194 8 8 chr4 725707 725841 -201602506 + AluJo/FRAM SINE Alu 163 296 -16 * 367 304 56 43 chr4 725891 726052 -201602295 + L1ME1 LINE L1 5262 5424 -2384 3678 183 56 67 chr4 726310 726788 -201601559 + Tigger1 DNA MER2_type 20 502 -1916 1631 157 27 20 chr4 726788 727081 -201601266 + AluJb SINE Alu 1 295 -17 3678 183 56 67 chr4 727081 727589 -201600758 + Tigger1 DNA MER2_type 502 995 -1423 239 207 49 37 chr4 727589 727671 -201600676 + Tigger1 DNA MER2_type 913 995 -1423 252 207 49 37 chr4 727671 727753 -201600594 + Tigger1 DNA MER2_type 913 995 -1423 2221 65 7 0 chr4 727873 728151 -201600196 + AluY SINE Alu 16 295 -16 1265 147 8 37 chr4 728153 728398 -201599949 + Tigger1 DNA MER2_type 1173 1410 -1008 291 195 26 26 chr4 732138 732215 -201596132 - MER58 DNA MER1_type -2311 109 33 266 272 20 54 chr4 732761 732908 -201595439 + (CACG)n Simple_repeat Simple_repeat 2 143 0 * 477 234 0 65 chr4 732830 733014 -201595333 + (CA)n Simple_repeat Simple_repeat 1 172 0 213 218 0 52 chr4 733075 733276 -201595071 + (CA)n Simple_repeat Simple_repeat 1 190 0 268 232 0 56 chr4 733297 733592 -201594755 + (CA)n Simple_repeat Simple_repeat 1 278 0 474 265 0 49 chr4 733607 733792 -201594555 + (CA)n Simple_repeat Simple_repeat 2 177 0 241 201 13 40 chr4 733803 733952 -201594395 + (CA)n Simple_repeat Simple_repeat 2 146 0 349 241 73 0 chr4 736872 736970 -201591377 - AluJ/FLAM SINE Alu -217 85 1 509 270 128 0 chr4 736970 737174 -201591173 - L1M4 LINE L1 -3119 3027 2798 863 259 64 4 chr4 737725 737991 -201590356 + L1ME1 LINE L1 5566 5847 -319 341 299 51 51 chr4 737991 738176 -201590171 + L1MD2 LINE L1 5973 6135 -224 2088 96 24 10 chr4 738193 738484 -201589863 - AluSp SINE Alu -17 296 2 1667 176 3 37 chr4 739101 739424 -201588923 + AluSx SINE Alu 1 312 0 1712 148 35 0 chr4 739429 739713 -201588634 + AluJo SINE Alu 6 299 -13 4268 176 79 129 chr4 739741 741526 -201586821 - pTR5 LTR ERV1 0 2438 743 2070 113 10 0 chr4 742093 742371 -201585976 + AluSx SINE Alu 1 284 -28 297 0 0 0 chr4 742371 742404 -201585943 + (CA)n Simple_repeat Simple_repeat 2 34 0 2070 113 10 0 chr4 742404 742425 -201585922 + AluSx SINE Alu 284 303 -9 2334 82 3 3 chr4 743502 743808 -201584539 - AluSc SINE Alu -3 306 1 2150 117 0 13 chr4 743814 744130 -201584217 - AluSx SINE Alu 0 312 1 23 0 0 0 chr4 748306 748329 -201580018 + AT_rich Low_complexity Low_complexity 1 23 0 2312 84 0 0 chr4 749456 749752 -201578595 - AluY SINE Alu -15 296 1 442 236 138 11 chr4 750595 750769 -201577578 - L1MC1 LINE L1 -1 6332 6137 1698 223 61 17 chr4 750885 751410 -201576937 - L1MC1 LINE L1 -382 5951 5404 265 347 35 15 chr4 753528 753727 -201574620 + L1MEd LINE L1 1306 1508 -5022 370 310 85 3 chr4 753729 753879 -201574468 + L1MEd LINE L1 1533 1696 -4844 1826 104 4 4 chr4 754926 755194 -201573153 - AluSc SINE Alu -3 306 39 1439 126 0 0 chr4 755294 755501 -201572846 + AluSq SINE Alu 91 297 -16 231 264 58 11 chr4 755513 755600 -201572747 - L1MC1 LINE L1 -2204 3942 3852 327 299 125 69 chr4 756076 757063 -201571284 + L1M2 LINE L1 369 1250 -5599 2135 99 10 6 chr4 760121 760433 -201567914 + AluSq SINE Alu 1 313 0 1006 235 40 99 chr4 760433 760879 -201567468 - Cheshire DNA MER1_type -1584 836 417 264 200 146 0 chr4 761030 761140 -201567207 - Cheshire DNA MER1_type -2216 204 79 448 184 0 0 chr4 761144 761220 -201567127 - AluJ/FLAM SINE Alu -236 76 1 442 241 25 64 chr4 762303 762336 -201566011 + L1MC5 LINE L1 7552 7585 -376 1687 166 44 0 chr4 762336 762631 -201565716 + AluJb SINE Alu 1 308 -4 442 241 25 64 chr4 762631 762800 -201565547 + L1MC5 LINE L1 7585 7746 -215 2215 86 0 35 chr4 762946 763260 -201565087 - AluSg SINE Alu -7 303 1 361 273 81 68 chr4 763758 763919 -201564428 - L1M4 LINE L1 -1575 4571 4409 1527 108 5 0 chr4 763926 764140 -201564207 + AluSg SINE Alu 1 215 -95 296 169 70 14 chr4 764248 764319 -201564028 + L1MD3 LINE L1 7921 7995 0 306 325 6 12 chr4 767462 767625 -201560722 + (CA)n Simple_repeat Simple_repeat 1 162 0 21 0 0 0 chr4 768078 768099 -201560248 + GC_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr4 769307 769337 -201559010 + GC_rich Low_complexity Low_complexity 1 30 0 310 382 94 9 chr4 769443 769676 -201558671 + HAL1 LINE L1 1011 1263 -1244 259 261 125 45 chr4 772949 773125 -201555222 - MLT1C LTR MaLR -269 198 9 21 57 0 0 chr4 774390 774425 -201553922 + GC_rich Low_complexity Low_complexity 1 35 0 2000 112 0 31 chr4 776213 776534 -201551813 + AluY SINE Alu 1 311 0 1370 187 100 2 chr4 776545 776929 -201551418 - MER31A LTR ERV1 -21 445 1 2351 55 3 0 chr4 777437 777729 -201550618 - AluY SINE Alu -18 293 1 512 261 252 13 chr4 777853 778167 -201550180 - L2 LINE L2 -14 3299 2911 538 107 68 10 chr4 779789 779892 -201548455 - MER34B LTR ERV1 -155 410 302 551 224 176 0 chr4 779960 780019 -201548328 + L1MC3 LINE L1 6784 6831 -954 2080 119 3 3 chr4 780019 780321 -201548026 + AluSp SINE Alu 1 302 -11 551 224 176 0 chr4 780321 780471 -201547876 + L1MC3 LINE L1 6831 7030 -755 352 133 42 0 chr4 780471 780554 -201547793 + FRAM/FAM SINE Alu 21 84 -91 335 285 60 98 chr4 780666 780901 -201547446 - L1MEc LINE L1 -3810 2572 2347 235 291 0 13 chr4 781097 781176 -201547171 + (TG)n Simple_repeat Simple_repeat 1 78 0 451 305 110 54 chr4 781334 782037 -201546310 - L1MEc LINE L1 -4638 1895 999 1779 119 8 0 chr4 782675 782927 -201545420 + AluSx SINE Alu 40 293 -19 180 233 50 67 chr4 783161 783221 -201545126 + L2 LINE L2 3204 3262 -10 309 292 62 10 chr4 784843 784939 -201543408 - L1MCa LINE L1 -3102 3324 3224 211 200 0 0 chr4 784943 784978 -201543369 + (TATG)n Simple_repeat Simple_repeat 2 36 0 1103 258 36 32 chr4 785010 785084 -201543263 - L1MCa LINE L1 -3212 3214 3142 1600 114 0 5 chr4 785084 785304 -201543043 + AluSg SINE Alu 1 219 -91 1103 258 36 32 chr4 785304 785698 -201542649 - L1MCa LINE L1 -3284 3142 2744 340 315 152 16 chr4 785912 786169 -201542178 + MLT1E LTR MaLR 301 592 -1 515 327 97 4 chr4 786182 786460 -201541887 - L1MCa LINE L1 -4002 2605 2302 402 304 57 53 chr4 786493 786756 -201541591 - L1MCa LINE L1 -4837 1591 1275 846 99 0 0 chr4 792269 792380 -201535967 + AluSp SINE Alu 1 111 -202 1592 130 53 37 chr4 792738 793037 -201535310 - AluJo SINE Alu -8 304 1 266 195 134 12 chr4 793164 793246 -201535101 + MER68 LTR ERV1 60 151 -411 502 265 0 32 chr4 793982 794167 -201534180 + (CA)n Simple_repeat Simple_repeat 1 179 0 * 510 318 11 19 chr4 794119 794547 -201533800 + (CACG)n Simple_repeat Simple_repeat 1 424 0 416 326 0 27 chr4 794528 794712 -201533635 + (CA)n Simple_repeat Simple_repeat 1 179 0 * 339 365 0 0 chr4 794789 794967 -201533380 + (CA)n Simple_repeat Simple_repeat 1 178 0 320 234 124 29 chr4 797032 797169 -201531178 + MER77 LTR ERV1 62 211 -394 418 293 55 0 chr4 797191 797372 -201530975 + MER77 LTR ERV1 407 597 -8 1982 112 3 39 chr4 797922 798234 -201530113 - AluSx SINE Alu -9 303 3 711 133 0 0 chr4 798236 798341 -201530006 - AluSg/x SINE Alu -8 301 197 2159 79 7 0 chr4 801676 801993 -201526354 + AluSg SINE Alu 1 319 0 1768 136 3 29 chr4 802955 803263 -201525084 + AluJo SINE Alu 1 300 -12 207 315 0 0 chr4 803286 803340 -201525007 + GA-rich Low_complexity Low_complexity 6 59 0 331 202 20 50 chr4 804550 804649 -201523698 + L1MC2 LINE L1 6240 6335 -9 1964 84 0 15 chr4 804654 804917 -201523430 + AluSc SINE Alu 15 273 -36 2313 75 0 3 chr4 805555 805850 -201522497 + AluSx SINE Alu 1 294 -18 256 262 0 16 chr4 807775 807836 -201520511 + GA-rich Low_complexity Low_complexity 3 62 0 2144 102 3 7 chr4 808932 809236 -201519111 + AluSx SINE Alu 1 303 -9 1537 167 30 13 chr4 809304 809603 -201518744 + AluJb SINE Alu 3 306 -6 329 313 123 20 chr4 809787 809982 -201518365 + L1ME1 LINE L1 5263 5477 -882 2491 147 159 16 chr4 811782 812328 -201516019 + MER51A LTR ERV1 2 625 -9 467 213 48 69 chr4 812412 812764 -201515583 + (CACGC)n Simple_repeat Simple_repeat 1 344 0 789 174 8 0 chr4 815362 815494 -201512853 + AluJo SINE Alu 3 135 -177 1399 181 72 22 chr4 815494 815771 -201512576 + AluJo SINE Alu 1 291 -21 1721 91 0 29 chr4 815883 816125 -201512222 - AluSq SINE Alu -78 235 1 212 296 0 34 chr4 821289 821465 -201506882 + (CA)n Simple_repeat Simple_repeat 1 170 0 429 309 85 15 chr4 822212 822489 -201505858 + L1ME1 LINE L1 3138 3779 -2367 1179 293 20 8 chr4 822586 822978 -201505369 + L1ME1 LINE L1 3944 4340 -1806 1728 240 88 11 chr4 822982 823182 -201505165 + L1ME1 LINE L1 5075 5258 -908 1528 141 148 0 chr4 823182 823438 -201504909 - AluJb SINE Alu -6 296 3 1728 240 88 11 chr4 823438 824051 -201504296 + L1ME1 LINE L1 5258 5943 -223 230 328 25 42 chr4 824399 824640 -201503707 + L1ME1 LINE L1 5841 6077 -89 26 0 0 0 chr4 824723 824749 -201503598 + AT_rich Low_complexity Low_complexity 1 26 0 1083 252 232 2 chr4 824811 825355 -201502992 + L1MD1 LINE L1 3527 4195 -1951 450 186 0 21 chr4 825361 825458 -201502889 + L1MA8 LINE L1 6026 6120 -171 483 221 31 0 chr4 825463 825590 -201502757 + L1MA8 LINE L1 6157 6287 -4 570 315 89 33 chr4 826311 826780 -201501567 + L2 LINE L2 2776 3279 -34 909 144 14 14 chr4 826800 826946 -201501401 + FRAM SINE Alu 13 158 -18 2193 87 10 16 chr4 826952 827261 -201501086 + AluY SINE Alu 5 311 0 2397 66 0 3 chr4 827494 827796 -201500551 - AluSc SINE Alu -8 301 1 793 217 120 77 chr4 827920 828049 -201500298 + L1MD1 LINE L1 4725 4847 -1395 2187 100 30 0 chr4 828049 828348 -201499999 - AluSx SINE Alu -4 308 1 793 217 120 77 chr4 828348 828990 -201499357 + L1MD1 LINE L1 4847 5520 -722 921 221 142 40 chr4 828993 829187 -201499160 + MLT1B LTR MaLR 1 174 -216 2245 103 0 0 chr4 829187 829489 -201498858 + AluSx SINE Alu 1 302 -10 921 221 142 40 chr4 829489 829647 -201498700 + MLT1B LTR MaLR 174 389 -1 1207 210 73 6 chr4 829648 829962 -201498385 + L1MD1 LINE L1 5527 5861 -381 416 263 226 29 chr4 829963 830237 -201498110 + L1MD1 LINE L1 5915 6242 0 1875 141 0 21 chr4 830341 830631 -201497716 + AluJo SINE Alu 1 284 -28 22 0 0 0 chr4 830776 830798 -201497549 + AT_rich Low_complexity Low_complexity 1 22 0 1192 217 25 39 chr4 830833 830857 -201497490 + L1ME LINE L1 5369 5392 -772 2019 108 30 3 chr4 830857 831152 -201497195 + AluSx SINE Alu 1 303 -9 1192 217 25 39 chr4 831152 831487 -201496860 + L1ME LINE L1 5392 5723 -441 607 185 15 11 chr4 831551 831687 -201496660 + MSTA LTR MaLR 3 141 -234 229 245 0 0 chr4 831854 831907 -201496440 + MSTA LTR MaLR 129 181 -247 456 219 0 0 chr4 831944 832040 -201496307 + AluSg/x SINE Alu 209 304 -6 1338 158 113 34 chr4 832516 832844 -201495503 + MLT1A1 LTR MaLR 12 365 0 483 352 82 9 chr4 833336 833569 -201494778 + MIR SINE MIR 4 253 -9 221 212 0 30 chr4 833770 833836 -201494511 + (CCGCT)n Simple_repeat Simple_repeat 4 67 0 2203 104 3 0 chr4 834098 834387 -201493960 - AluSx SINE Alu -22 290 1 779 191 19 13 chr4 834413 834570 -201493777 + FRAM SINE Alu 1 158 -18 2280 97 7 0 chr4 834782 835091 -201493256 - AluSp SINE Alu -2 311 1 600 195 55 16 chr4 835602 835730 -201492617 + FLAM_A SINE Alu 1 133 0 770 206 41 85 chr4 835805 836121 -201492226 + MER46C DNA MER2_type 20 321 -17 427 284 147 47 chr4 839218 839248 -201489099 + MER102b DNA MER1_type 86 112 -1316 1895 59 134 0 chr4 839248 839525 -201488822 + AluSq SINE Alu 2 312 0 427 284 147 47 chr4 839525 839723 -201488624 + MER102b DNA MER1_type 112 340 -1 257 114 286 0 chr4 839834 839904 -201488443 + LTR54 LTR ERV1 391 480 -30 801 339 120 48 chr4 840146 841082 -201487265 - L2 LINE L2 -1010 2304 1302 1677 201 143 55 chr4 841378 842089 -201486258 + L1MC2 LINE L1 2320 3086 -3060 1340 123 0 47 chr4 842109 842320 -201486027 + AluSx SINE Alu 35 235 -77 3631 201 91 136 chr4 842342 842696 -201485651 + L1MC2 LINE L1 3073 3441 -2705 2136 107 0 10 chr4 842696 842995 -201485352 + AluSc SINE Alu 1 296 -13 3631 201 91 136 chr4 842995 843085 -201485262 + L1MC2 LINE L1 3441 3534 -2612 835 79 44 0 chr4 843085 843199 -201485148 + L1MA2 LINE L1 6186 6304 0 3631 201 91 136 chr4 843199 843304 -201485043 + L1MC2 LINE L1 3534 3642 -2504 2085 132 3 0 chr4 843304 843599 -201484748 + AluSq SINE Alu 1 296 -17 3631 201 91 136 chr4 843599 844244 -201484103 + L1MC2 LINE L1 3642 4315 -1831 2271 106 0 0 chr4 844244 844545 -201483802 + AluSx SINE Alu 1 301 -11 3631 201 91 136 chr4 844545 845038 -201483309 + L1MC2 LINE L1 4315 4765 -1381 561 204 0 0 chr4 845038 845136 -201483211 + FLAM_A SINE Alu 1 98 -44 3631 201 91 136 chr4 845136 845319 -201483028 + L1MC2 LINE L1 4765 4955 -1191 1137 67 0 0 chr4 845321 845456 -201482891 + AluSp SINE Alu 1 135 -178 2290 106 0 0 chr4 845456 845757 -201482590 + AluSx SINE Alu 1 301 -11 501 235 137 0 chr4 845762 845945 -201482402 + L1MC2 LINE L1 4958 5165 -981 2160 176 46 18 chr4 845977 846189 -201482158 + L1MC2 LINE L1 5753 5958 -386 2263 96 3 0 chr4 846189 846491 -201481856 + AluSq SINE Alu 1 303 -10 2160 176 46 18 chr4 846491 846748 -201481599 + L1MC2 LINE L1 5958 6240 -104 2267 89 0 0 chr4 846748 847072 -201481275 + AluSg SINE Alu 1 324 0 2160 176 46 18 chr4 847072 847100 -201481247 + L1MC2 LINE L1 6240 6266 -78 2210 101 7 3 chr4 847118 847415 -201480932 + AluSq SINE Alu 1 298 -15 441 204 0 0 chr4 849882 850019 -201478328 + (TG)n Simple_repeat Simple_repeat 1 137 0 219 177 0 0 chr4 850047 850109 -201478238 + (TG)n Simple_repeat Simple_repeat 2 63 0 243 0 0 0 chr4 850971 850998 -201477349 + (TG)n Simple_repeat Simple_repeat 1 27 0 252 200 0 0 chr4 851040 851100 -201477247 + (CA)n Simple_repeat Simple_repeat 1 60 0 305 360 81 37 chr4 851525 851897 -201476450 + L1MDa LINE L1 1271 1610 -1291 34 42 0 0 chr4 851901 851949 -201476398 + GC_rich Low_complexity Low_complexity 1 48 0 201 121 0 0 chr4 852327 852360 -201475987 + (CTG)n Simple_repeat Simple_repeat 1 33 0 21 0 0 0 chr4 852368 852389 -201475958 + GC_rich Low_complexity Low_complexity 1 21 0 195 235 0 0 chr4 854590 854641 -201473706 + G-rich Low_complexity Low_complexity 2 52 0 241 324 20 10 chr4 854954 855056 -201473291 + (CGTG)n Simple_repeat Simple_repeat 1 103 0 228 335 0 58 chr4 855009 855197 -201473150 + (TG)n Simple_repeat Simple_repeat 2 178 0 * 211 366 0 17 chr4 855319 855491 -201472856 + (TG)n Simple_repeat Simple_repeat 1 169 0 183 42 0 0 chr4 855542 855566 -201472781 + (TG)n Simple_repeat Simple_repeat 2 25 0 264 120 0 0 chr4 855759 855809 -201472538 + (TG)n Simple_repeat Simple_repeat 2 51 0 2125 77 42 0 chr4 857929 858214 -201470133 - AluSx SINE Alu -13 299 3 256 178 27 0 chr4 859721 859794 -201468553 + (TG)n Simple_repeat Simple_repeat 2 76 0 253 83 0 0 chr4 864152 864200 -201464147 - L1PA2 LINE L1 0 6155 6108 200 187 0 13 chr4 865258 865333 -201463014 + (CGGG)n Simple_repeat Simple_repeat 3 76 0 22 35 0 0 chr4 869353 869382 -201458965 + GC_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr4 869490 869513 -201458834 + GC_rich Low_complexity Low_complexity 1 23 0 297 0 0 0 chr4 871203 871236 -201457111 + (TCTCCC)n Simple_repeat Simple_repeat 5 37 0 6715 48 2 154 chr4 871242 872420 -201455927 + SVA Other Other 50 1047 -339 471 266 21 7 chr4 872562 872705 -201455642 - MLT1A2 LTR MaLR 0 374 230 1096 228 87 3 chr4 872749 873095 -201455252 + MLT1C LTR MaLR 3 377 -90 296 373 32 0 chr4 873085 873211 -201455136 + MER82 DNA MER2_type 516 645 -8 * 928 81 0 0 chr4 873573 873696 -201454651 - AluSp/q SINE Alu -16 297 175 217 230 13 0 chr4 873808 873960 -201454387 + (CA)n Simple_repeat Simple_repeat 2 155 0 202 217 0 17 chr4 873973 874033 -201454314 + (CCCA)n Simple_repeat Simple_repeat 3 61 0 316 195 20 23 chr4 874035 874294 -201454053 + (CA)n Simple_repeat Simple_repeat 1 258 0 364 266 12 0 chr4 874313 874482 -201453865 + (CA)n Simple_repeat Simple_repeat 2 172 0 236 284 15 0 chr4 878187 878254 -201450093 + MIR SINE MIR 82 149 -59 2266 87 3 3 chr4 879120 879420 -201448927 + AluSg SINE Alu 1 300 -10 252 255 0 32 chr4 880458 880552 -201447795 + C-rich Low_complexity Low_complexity 1 91 0 183 333 0 0 chr4 882018 882063 -201446284 + L2 LINE L2 3225 3269 -3 2050 125 0 7 chr4 888276 888579 -201439768 - AluJb SINE Alu -11 301 1 1718 234 96 71 chr4 888943 889097 -201439250 - L1ME1 LINE L1 -75 6091 5942 2040 114 7 0 chr4 889097 889387 -201438960 - AluSx SINE Alu -20 292 1 1718 234 96 71 chr4 889387 889846 -201438501 - L1ME1 LINE L1 -224 5942 5449 2202 114 0 0 chr4 889846 890152 -201438195 + AluSx SINE Alu 1 306 -6 1718 234 96 71 chr4 890152 890458 -201437889 - L1ME1 LINE L1 -717 5449 5152 2304 110 0 0 chr4 890458 890766 -201437581 + AluSx SINE Alu 1 308 -4 1454 193 72 34 chr4 890769 891033 -201437314 + L1ME LINE L1 4664 4951 -1195 2225 93 0 26 chr4 891033 891343 -201437004 + AluSc SINE Alu 1 302 -7 1454 193 72 34 chr4 891343 891492 -201436855 + L1ME LINE L1 4951 5093 -1053 615 137 154 17 chr4 891493 891610 -201436737 - FLAM_C SINE Alu 0 133 1 2009 119 11 0 chr4 891662 891948 -201436399 + AluSx SINE Alu 1 289 -23 524 299 60 9 chr4 893311 893528 -201434819 + L1ME LINE L1 5359 5586 -578 536 15 0 0 chr4 893528 893593 -201434754 - AluY SINE Alu -10 300 236 22 35 0 0 chr4 893877 893906 -201434441 + GC_rich Low_complexity Low_complexity 1 29 0 403 306 177 23 chr4 896340 896640 -201431707 - L2 LINE L2 -254 3059 2806 2093 67 0 4 chr4 896640 896908 -201431439 - AluY SINE Alu -3 308 42 403 306 177 23 chr4 896908 897144 -201431203 - L2 LINE L2 -507 2806 2421 261 266 6 51 chr4 898425 898583 -201429764 + G-rich Low_complexity Low_complexity 5 155 0 633 175 79 16 chr4 900497 900524 -201427823 - AluJo/FRAM SINE Alu -14 298 274 2365 74 3 0 chr4 900524 900821 -201427526 + AluSg SINE Alu 1 298 -12 633 175 79 16 chr4 900821 900919 -201427428 - AluJo/FRAM SINE Alu -38 274 165 948 178 12 0 chr4 900931 901100 -201427247 - AluJo SINE Alu -21 291 121 2053 102 3 22 chr4 901129 901443 -201426904 + AluSc SINE Alu 1 308 -1 582 279 177 42 chr4 901444 901480 -201426867 - MER69 DNA AcHobo -64 2462 2432 2049 116 3 7 chr4 901480 901781 -201426566 + AluSx SINE Alu 1 300 -12 2350 84 0 3 chr4 901781 902092 -201426255 + AluSg SINE Alu 1 310 0 582 279 177 42 chr4 902092 902642 -201425705 - MER69 DNA AcHobo -93 2433 1796 357 227 84 17 chr4 903073 903192 -201425155 - MER74B LTR ERVL 0 622 496 259 194 65 0 chr4 903417 903479 -201424868 - MER74B LTR ERVL -483 139 74 2397 76 0 0 chr4 903479 903780 -201424567 + AluSq SINE Alu 1 301 -12 340 169 26 13 chr4 903935 904012 -201424335 + MER107 DNA MER1_type 71 148 -49 439 336 38 15 chr4 904083 904348 -201423999 + HERVL74 LTR ERVL 1671 1941 -3744 383 123 0 0 chr4 904425 904490 -201423857 + HERVL74 LTR ERVL 2096 2160 -3525 1511 164 17 40 chr4 904505 904647 -201423700 + AluJb SINE Alu 1 145 -167 180 0 0 0 chr4 904647 904667 -201423680 + (CAAT)n Simple_repeat Simple_repeat 1 20 0 1511 164 17 40 chr4 904667 904822 -201423525 + AluJb SINE Alu 145 291 -21 2410 218 60 35 chr4 904825 904992 -201423355 + HERVL74 LTR ERVL 2241 2402 -3283 2332 73 0 13 chr4 904992 905294 -201423053 - AluY SINE Alu -13 298 1 2410 218 60 35 chr4 905294 905930 -201422417 + HERVL74 LTR ERVL 2402 3064 -2621 362 291 52 23 chr4 906015 906187 -201422160 - MLT1D LTR MaLR -264 241 65 1576 216 138 12 chr4 906383 906922 -201421425 + MER39B LTR ERV1 1 649 -4 2305 100 0 0 chr4 907000 907299 -201421048 - AluSx SINE Alu -13 299 1 225 228 0 13 chr4 907332 907411 -201420936 - L1MB8 LINE L1 -4 6174 6097 534 250 83 74 chr4 907433 907729 -201420618 - L1MD3 LINE L1 0 8042 7770 1851 119 93 0 chr4 907729 908007 -201420340 + AluSx SINE Alu 7 310 -2 534 250 83 74 chr4 908007 908135 -201420212 - L1MD3 LINE L1 -272 7770 7645 333 314 32 16 chr4 908664 908788 -201419559 - L1ME LINE L1 -5932 138 13 1440 224 13 19 chr4 909088 909396 -201418951 - AluJo SINE Alu -6 306 1 1150 142 29 0 chr4 909470 909674 -201418673 + MER2 DNA MER2_type 1 210 -135 242 172 52 0 chr4 909713 909771 -201418576 + MER2 DNA MER2_type 280 340 -5 821 183 0 0 chr4 909819 909961 -201418386 + AluSg/x SINE Alu 171 312 0 381 329 17 69 chr4 913105 913187 -201415160 + L1ME1 LINE L1 5776 5861 -305 1636 170 47 55 chr4 913187 913551 -201414796 - THE1B LTR MaLR 0 364 4 381 329 17 69 chr4 913551 913699 -201414648 + L1ME1 LINE L1 5861 5994 -172 1433 140 131 44 chr4 914934 915235 -201413112 + THE1C LTR MaLR 1 274 -101 2260 70 3 26 chr4 915235 915537 -201412810 - AluY SINE Alu -16 295 1 243 0 0 0 chr4 915537 915564 -201412783 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1967 105 3 47 chr4 915564 915860 -201412487 - AluSg SINE Alu -27 283 1 1433 140 131 44 chr4 915860 915899 -201412448 + THE1C LTR MaLR 273 373 -2 324 237 144 17 chr4 916199 916250 -201412097 + L1MEc LINE L1 55 98 -6298 2081 124 0 3 chr4 916250 916548 -201411799 - AluSx SINE Alu -15 297 1 324 237 144 17 chr4 916548 916614 -201411733 + L1MEc LINE L1 98 187 -6209 3228 260 81 76 chr4 916854 916974 -201411373 + L1MEc LINE L1 1732 1850 -4365 1703 152 27 14 chr4 916974 917271 -201411076 + AluJo SINE Alu 12 312 0 3228 260 81 76 chr4 917271 917868 -201410479 + L1MEc LINE L1 1850 2443 -3772 2472 71 0 0 chr4 917868 918178 -201410169 + AluY SINE Alu 1 310 -1 3228 260 81 76 chr4 918178 919692 -201408655 + L1MEc LINE L1 2443 3949 -2266 1694 190 88 41 chr4 919692 920103 -201408244 + MSTB1 LTR MaLR 2 431 -1 2087 116 3 3 chr4 920111 920405 -201407942 + AluSq SINE Alu 1 294 -19 3228 260 81 76 chr4 920405 920991 -201407356 + L1MEc LINE L1 3955 4569 -1646 2120 99 7 0 chr4 920991 921283 -201407064 - AluSx SINE Alu -18 294 1 3228 260 81 76 chr4 921283 921765 -201406582 + L1MEc LINE L1 4569 5047 -1168 779 306 65 44 chr4 923018 923502 -201404845 - L1MB7 LINE L1 -9 6165 5676 260 267 13 20 chr4 925991 926141 -201402206 + CT-rich Low_complexity Low_complexity 2 150 0 318 366 57 60 chr4 931187 931452 -201396895 + HAL1 LINE L1 1013 1276 -1231 736 153 0 0 chr4 937303 937414 -201390933 + FLAM_C SINE Alu 1 111 -32 1350 118 24 0 chr4 937420 937631 -201390716 - AluY SINE Alu -12 299 84 278 125 0 0 chr4 937632 937672 -201390675 - AluY SINE Alu -52 249 210 28 29 0 0 chr4 938869 938904 -201389443 + AT_rich Low_complexity Low_complexity 1 35 0 2274 56 3 11 chr4 940224 940510 -201387837 - AluY SINE Alu -27 284 1 2222 105 0 0 chr4 940510 940804 -201387543 - AluSg SINE Alu -16 294 1 819 234 148 10 chr4 940807 940993 -201387354 - L1MEc LINE L1 -4347 2049 1890 1787 117 0 0 chr4 940993 941240 -201387107 + AluSx SINE Alu 48 294 -18 819 234 148 10 chr4 941240 941343 -201387004 - L1MEc LINE L1 -4506 1890 1720 621 269 72 46 chr4 941396 941566 -201386781 - L1MEc LINE L1 -5107 1289 1125 2192 104 0 0 chr4 941566 941855 -201386492 - AluSx SINE Alu -23 289 1 621 269 72 46 chr4 941855 942074 -201386273 - L1MEc LINE L1 -5271 1125 890 1503 268 84 37 chr4 942211 942305 -201386042 - L1MEc LINE L1 -5424 972 884 1572 131 0 4 chr4 942305 942534 -201385813 - AluSq SINE Alu -85 228 1 1503 268 84 37 chr4 942534 942744 -201385603 - L1MEc LINE L1 -5512 884 685 1641 181 7 0 chr4 942744 943032 -201385315 - AluJb SINE Alu -22 290 1 1503 268 84 37 chr4 943032 943428 -201384919 - L1MEc LINE L1 -5711 685 238 318 302 52 0 chr4 945971 946087 -201382260 + MLT1A1 LTR MaLR 19 140 -225 262 288 55 0 chr4 946919 947082 -201381265 + (GTGTG)n Simple_repeat Simple_repeat 5 176 0 396 0 0 0 chr4 948568 948612 -201379735 + (TG)n Simple_repeat Simple_repeat 1 44 0 261 0 0 0 chr4 948657 948686 -201379661 + (TG)n Simple_repeat Simple_repeat 2 30 0 279 0 0 0 chr4 948722 948753 -201379594 + (TG)n Simple_repeat Simple_repeat 2 32 0 186 43 0 0 chr4 948791 948814 -201379533 + (TG)n Simple_repeat Simple_repeat 2 24 0 260 89 0 22 chr4 948848 948893 -201379454 + (TG)n Simple_repeat Simple_repeat 1 44 0 1832 173 7 0 chr4 949767 950068 -201378279 - AluJb SINE Alu -4 308 6 2198 105 20 0 chr4 950072 950376 -201377971 - AluSg SINE Alu 0 310 1 997 227 95 36 chr4 950669 951061 -201377286 - L1M3 LINE L1 -465 5715 5285 477 193 0 11 chr4 951084 951172 -201377175 - AluSg/x SINE Alu -26 284 198 433 211 13 0 chr4 951171 951247 -201377100 - AluJo SINE Alu -151 161 85 * 890 73 0 0 chr4 951348 951458 -201376889 - AluSq/x SINE Alu -203 110 1 200 328 160 0 chr4 958276 958395 -201369952 + MIR SINE MIR 68 205 -57 206 322 0 0 chr4 961632 961722 -201366625 + C-rich Low_complexity Low_complexity 1 90 0 2411 50 3 10 chr4 963060 963358 -201364989 - AluY SINE Alu -15 296 1 229 282 91 9 chr4 963962 964072 -201364275 - L1MD1 LINE L1 -1 6241 6123 1870 152 50 19 chr4 968156 968519 -201359828 - THE1C LTR MaLR -1 374 1 1485 112 0 5 chr4 969344 969550 -201358797 - AluSg/x SINE Alu -21 291 87 361 83 0 0 chr4 971056 971104 -201357243 + THE1C LTR MaLR 1 48 -327 2376 111 42 11 chr4 971126 971479 -201356868 + THE1B LTR MaLR 1 364 0 273 358 57 0 chr4 972076 972199 -201356148 + Tigger8 DNA MER2_type 170 299 -367 258 181 96 12 chr4 972292 972375 -201355972 + Tigger8 DNA MER2_type 434 523 -143 786 239 84 47 chr4 976854 977067 -201351280 + MER58A DNA MER1_type 1 221 -3 2143 88 14 3 chr4 977179 977476 -201350871 + AluSp SINE Alu 1 300 -13 543 222 50 14 chr4 978775 978931 -201349416 + MER74A LTR ERVL 23 239 -383 263 258 82 21 chr4 979024 979121 -201349226 + MER74B LTR ERVL 512 614 -8 2307 77 10 16 chr4 979209 979521 -201348826 + AluSp SINE Alu 1 310 -3 301 261 91 0 chr4 980382 980470 -201347877 + L1M4 LINE L1 69 164 -6695 341 197 13 0 chr4 980540 980616 -201347731 + L1P LINE L1 3714 3790 -2356 466 285 100 43 chr4 981046 981499 -201346848 + L1M4 LINE L1 1282 1728 -5219 * 3734 215 23 85 chr4 981484 982730 -201345617 + L1M4 LINE L1 4410 5578 -1379 421 205 49 8 chr4 982700 982822 -201345525 + L1MC1 LINE L1 2003 2129 -4830 * 2104 95 54 0 chr4 982825 983121 -201345226 + AluSx SINE Alu 1 312 0 1011 150 24 0 chr4 983121 983288 -201345059 + AluJb SINE Alu 134 304 -8 324 249 89 35 chr4 983300 983469 -201344878 + L1MC1 LINE L1 2273 2450 -4688 413 295 59 56 chr4 983472 983811 -201344536 + L1MC1 LINE L1 2528 2867 -4271 862 164 96 82 chr4 983811 984030 -201344317 - MLT1A2 LTR MaLR 0 374 153 3012 199 38 9 chr4 984049 984706 -201343641 - L1MB3 LINE L1 -30 6153 5478 1389 150 86 29 chr4 984868 985148 -201343199 - AluJb SINE Alu -16 296 1 820 133 55 0 chr4 985148 985276 -201343071 - AluSq/x SINE Alu -178 135 1 863 157 21 0 chr4 985278 985418 -201342929 - FRAM SINE Alu -17 159 17 1731 188 65 82 chr4 985431 985486 -201342861 - L1MB3 LINE L1 -697 5474 5420 771 197 0 0 chr4 985486 985618 -201342729 - FLAM_A SINE Alu -1 132 1 1731 188 65 82 chr4 985618 985730 -201342617 - L1MB3 LINE L1 -751 5420 5308 1704 173 3 10 chr4 985730 986025 -201342322 - AluJb SINE Alu -17 295 3 1731 188 65 82 chr4 986025 986472 -201341875 - L1MB3 LINE L1 -863 5308 4873 553 163 206 0 chr4 986490 986631 -201341716 - MLT1A2 LTR MaLR -220 170 1 671 242 55 19 chr4 986643 986933 -201341414 + L1MC1 LINE L1 2835 3133 -3824 * 1147 246 55 25 chr4 986924 986979 -201341368 + L1MC1 LINE L1 5162 5214 -1743 2026 124 3 13 chr4 986979 987286 -201341061 + AluSx SINE Alu 1 304 -8 1147 246 55 25 chr4 987286 987664 -201340683 + L1MC1 LINE L1 5214 5608 -1349 300 340 123 0 chr4 987682 987844 -201340503 - L1MEc LINE L1 -4016 2201 2020 757 292 79 17 chr4 987878 988231 -201340116 - L1MEc LINE L1 -4432 1964 1590 651 270 77 123 chr4 988254 988322 -201340025 + L1MC4 LINE L1 6885 6955 -853 1976 143 0 10 chr4 988322 988622 -201339725 + AluSx SINE Alu 1 297 -15 651 270 77 123 chr4 988622 989334 -201339013 + L1MC4 LINE L1 6955 7629 -179 457 254 71 56 chr4 990140 990337 -201338010 + L1MC4 LINE L1 7841 8040 -2 30 27 0 0 chr4 990409 990446 -201337901 + AT_rich Low_complexity Low_complexity 1 37 0 27 49 0 0 chr4 990485 990526 -201337821 + AT_rich Low_complexity Low_complexity 1 41 0 21 0 0 0 chr4 990565 990586 -201337761 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr4 990633 990665 -201337682 + AT_rich Low_complexity Low_complexity 1 32 0 5873 143 45 22 chr4 990803 991980 -201336367 + L1MC1 LINE L1 5963 7144 0 195 346 28 60 chr4 993171 993353 -201334994 + L2 LINE L2 3133 3308 -5 191 267 67 0 chr4 994349 994424 -201333923 + L2 LINE L2 1705 1784 -1530 455 214 23 110 chr4 994600 994664 -201333683 + LTR37A LTR ERV1 260 328 -98 1961 178 103 0 chr4 994664 995052 -201333295 - MSTA LTR MaLR 0 428 1 455 214 23 110 chr4 995052 995079 -201333268 + LTR37A LTR ERV1 328 356 -70 1500 162 58 7 chr4 995079 995357 -201332990 - AluJo SINE Alu -20 292 1 455 214 23 110 chr4 995357 995437 -201332910 + LTR37A LTR ERV1 356 417 -9 888 193 119 30 chr4 996160 996362 -201331985 + MER58A DNA MER1_type 1 220 -4 1986 101 0 7 chr4 996365 996668 -201331679 + AluSg SINE Alu 23 310 0 920 123 0 0 chr4 996785 996915 -201331432 - FLAM_C SINE Alu 0 143 14 222 309 73 0 chr4 997479 997547 -201330800 + MIR SINE MIR 156 228 -34 417 281 10 0 chr4 999603 999699 -201328648 - MLT1K LTR MaLR -264 324 228 2528 196 38 108 chr4 999700 1000553 -201327794 - MER54B LTR ERVL 0 793 1 417 162 40 0 chr4 1000554 1000628 -201327719 - MLT1K LTR MaLR -358 230 154 759 235 0 47 chr4 1001365 1001535 -201326812 + FRAM SINE Alu 1 162 -4 208 139 0 28 chr4 1001538 1001574 -201326773 + (GGAAA)n Simple_repeat Simple_repeat 1 35 0 294 373 83 0 chr4 1002007 1002200 -201326147 + L2 LINE L2 3094 3302 -11 2111 86 18 0 chr4 1002756 1003071 -201325276 + AluSx SINE Alu 1 320 0 316 326 31 23 chr4 1003208 1003337 -201325010 + L1MEc LINE L1 1277 1406 -4990 2190 105 3 10 chr4 1003341 1003646 -201324701 - AluSp SINE Alu -10 303 1 350 228 13 0 chr4 1003696 1003775 -201324572 - MER58 DNA MER1_type -1 2419 2340 1915 142 13 3 chr4 1003843 1004146 -201324201 + AluJb SINE Alu 1 306 -6 441 225 6 66 chr4 1006000 1006243 -201322104 + G-rich Low_complexity Low_complexity 1 228 0 288 0 0 0 chr4 1006268 1006300 -201322047 + (TAA)n Simple_repeat Simple_repeat 3 34 0 621 105 175 18 chr4 1006346 1006460 -201321887 + FLAM_C SINE Alu 1 132 -1 342 265 11 54 chr4 1006579 1006764 -201321583 + G-rich Low_complexity Low_complexity 4 180 0 1908 124 90 37 chr4 1006923 1007277 -201321070 + THE1C LTR MaLR 1 373 -2 9807 132 24 40 chr4 1007281 1008885 -201319462 + THE1C-int LTR MaLR 3 1580 0 1906 131 81 36 chr4 1008885 1009244 -201319103 + THE1C LTR MaLR 1 375 0 201 304 25 13 chr4 1009248 1009327 -201319020 + (CGGGA)n Simple_repeat Simple_repeat 4 83 0 * 263 286 40 34 chr4 1009274 1009449 -201318898 + (GGATG)n Simple_repeat Simple_repeat 4 179 0 963 161 11 5 chr4 1012456 1012642 -201315705 - Charlie1 DNA MER1_type -4 2757 2571 393 235 49 49 chr4 1014138 1014321 -201314026 + L1ME3A LINE L1 5096 5278 -868 2204 71 0 4 chr4 1016592 1016859 -201311488 + AluY SINE Alu 1 266 -45 2238 100 0 17 chr4 1017067 1017368 -201310979 + AluSx SINE Alu 17 312 0 216 345 56 39 chr4 1017870 1018102 -201310245 + MIR SINE MIR 8 243 -19 471 350 90 8 chr4 1018429 1018695 -201309652 + L1MEc LINE L1 1529 1816 -4580 2084 133 7 3 chr4 1019667 1019968 -201308379 - AluSx SINE Alu -10 302 1 1078 267 39 27 chr4 1020353 1020497 -201307850 + L1MEc LINE L1 2685 2826 -3389 2947 92 54 7 chr4 1020497 1020921 -201307426 + MLT2A1 LTR ERVL 1 444 0 1078 267 39 27 chr4 1020921 1021188 -201307159 + L1MEc LINE L1 2826 3101 -3114 421 67 0 0 chr4 1021196 1021256 -201307091 + L1P3 LINE L1 5723 5782 -372 1156 37 0 15 chr4 1021260 1021394 -201306953 + AluYb8 SINE Alu 1 132 -186 1352 316 38 15 chr4 1021458 1022270 -201306077 + L1MEc LINE L1 3365 4195 -2020 1060 142 111 0 chr4 1022589 1022779 -201305568 - AluJb SINE Alu -22 290 80 1121 105 26 0 chr4 1022855 1023008 -201305339 - AluSg/x SINE Alu -19 291 135 506 209 147 0 chr4 1023009 1023186 -201305161 - Charlie5 DNA MER1_type -60 2552 2350 205 297 120 47 chr4 1024280 1024472 -201303875 + L2 LINE L2 2155 2360 -954 807 252 13 4 chr4 1024753 1024983 -201303364 + L1ME3A LINE L1 5624 5855 -315 1145 223 21 7 chr4 1024989 1025272 -201303075 + AluSx SINE Alu 26 312 0 371 277 8 54 chr4 1025756 1025993 -201302354 + C-rich Low_complexity Low_complexity 1 226 0 216 344 0 27 chr4 1026009 1026192 -201302155 + C-rich Low_complexity Low_complexity 1 178 0 185 0 0 39 chr4 1026228 1026254 -201302093 + (CCCCCT)n Simple_repeat Simple_repeat 1 25 0 346 190 235 23 chr4 1029732 1029910 -201298437 - MLT1J1 LTR MaLR -249 201 3 211 283 43 22 chr4 1030700 1030792 -201297555 - L2 LINE L2 -120 3193 3100 223 296 92 7 chr4 1031086 1031228 -201297119 - L2 LINE L2 -285 3028 2875 369 0 0 0 chr4 1031528 1031569 -201296778 + (CA)n Simple_repeat Simple_repeat 2 42 0 539 321 117 20 chr4 1031589 1031962 -201296385 + L1ME LINE L1 2676 3088 -3058 324 324 36 21 chr4 1032068 1032275 -201296072 + L1ME LINE L1 5564 5773 -348 2301 95 0 7 chr4 1032335 1032629 -201295718 - AluSc SINE Alu -17 292 1 2320 72 21 3 chr4 1032737 1033027 -201295320 - AluY SINE Alu -15 296 2 23 0 0 0 chr4 1033963 1033986 -201294361 + AT_rich Low_complexity Low_complexity 1 23 0 1824 154 3 14 chr4 1033986 1034279 -201294068 - AluJo SINE Alu -22 290 1 2218 128 0 0 chr4 1034289 1034586 -201293761 - AluSx SINE Alu -15 297 1 843 275 36 14 chr4 1035685 1035961 -201292386 - L3b LINE CR1 -200 1383 1102 367 246 95 8 chr4 1036322 1036448 -201291899 + L1ME LINE L1 5344 5480 -641 2684 146 116 30 chr4 1036481 1037287 -201291060 + L1MCa LINE L1 1203 2207 -4219 2070 106 34 20 chr4 1037287 1037579 -201290768 + AluSx SINE Alu 1 296 -16 2684 146 116 30 chr4 1037579 1037838 -201290509 + L1MCa LINE L1 2207 2442 -3984 6690 209 75 114 chr4 1037974 1038817 -201289530 + L1MCa LINE L1 2428 3303 -3123 986 210 46 1 chr4 1038817 1039118 -201289229 - MER2 DNA MER2_type 0 345 1 6690 209 75 114 chr4 1039118 1040763 -201287584 + L1MCa LINE L1 3303 5106 -1320 319 343 73 7 chr4 1041407 1041544 -201286803 - MIR SINE MIR -97 165 20 238 220 0 0 chr4 1041871 1041921 -201286426 + L2 LINE L2 3183 3232 -81 350 229 58 122 chr4 1042300 1042505 -201285842 + MIR SINE MIR 1 192 -70 203 351 22 30 chr4 1042583 1042717 -201285630 + L2 LINE L2 2622 2754 -560 297 280 13 70 chr4 1042821 1042978 -201285369 - MIR SINE MIR 0 262 115 * 564 209 104 86 chr4 1042973 1043092 -201285255 + MIR SINE MIR 35 161 -101 2157 128 3 0 chr4 1043092 1043388 -201284959 + AluSx SINE Alu 1 297 -15 564 209 104 86 chr4 1043388 1043488 -201284859 + MIR SINE MIR 161 258 -4 1373 191 93 31 chr4 1043531 1043855 -201284492 + MER2 DNA MER2_type 1 344 0 918 251 212 6 chr4 1043925 1044288 -201284059 - L2 LINE L2 -337 2977 2540 7541 29 13 0 chr4 1044299 1045369 -201282978 - L1PA4 LINE L1 0 6155 5082 343 269 185 0 chr4 1045376 1045484 -201282863 - MIR SINE MIR -108 154 27 750 293 98 32 chr4 1045842 1046160 -201282187 + L1MDa LINE L1 27 374 -6166 1651 167 25 117 chr4 1046160 1046632 -201281715 - MSTB1 LTR MaLR 0 432 4 750 293 98 32 chr4 1046632 1046682 -201281665 + L1MDa LINE L1 374 419 -6121 234 313 1 13 chr4 1046773 1046861 -201281486 + L1MDa LINE L1 778 865 -5665 2539 92 14 0 chr4 1046980 1047329 -201281018 + L1PB1 LINE L1 5794 6147 -4 1480 229 72 13 chr4 1047338 1047915 -201280432 + L1MDa LINE L1 2155 2650 -3890 1173 176 5 11 chr4 1047915 1048103 -201280244 + AluJo SINE Alu 1 187 -125 1000 253 68 3 chr4 1048211 1048547 -201279800 + L1MDa LINE L1 2761 3118 -3422 192 304 14 29 chr4 1048584 1048653 -201279694 + L2 LINE L2 1164 1231 -2083 200 289 19 58 chr4 1048679 1048783 -201279564 + L2 LINE L2 1298 1397 -1917 1137 230 157 3 chr4 1048805 1049148 -201279199 + MSTD LTR MaLR 1 396 0 280 242 0 102 chr4 1049357 1049485 -201278862 + L2 LINE L2 3198 3312 -1 425 331 64 0 chr4 1049870 1050027 -201278320 + MIR SINE MIR 73 239 -23 478 330 52 6 chr4 1050107 1050280 -201278067 - MIR SINE MIR -70 192 12 265 215 131 0 chr4 1050722 1050829 -201277518 - L1ME4a LINE L1 -171 5950 5830 409 254 224 15 chr4 1050965 1051166 -201277181 + MIR SINE MIR 9 251 -11 378 303 25 8 chr4 1051482 1051604 -201276743 - MER5B DNA MER1_type 0 178 55 1171 257 150 1 chr4 1051735 1052429 -201275918 - L1ME3A LINE L1 -48 6122 5318 982 156 11 5 chr4 1054593 1054779 -201273568 - Charlie1 DNA MER1_type -4 2757 2571 389 235 50 50 chr4 1056318 1056497 -201271850 + L1M4 LINE L1 5096 5274 -872 2192 75 0 4 chr4 1057474 1057741 -201270606 + AluY SINE Alu 1 266 -45 2238 102 0 16 chr4 1057947 1058251 -201270096 + AluSx SINE Alu 14 312 0 234 354 42 23 chr4 1058772 1058987 -201269360 + MIR SINE MIR 25 243 -19 228 297 121 11 chr4 1059345 1059527 -201268820 + L1MDa LINE L1 1886 2087 -4634 2194 129 0 3 chr4 1060553 1060862 -201267485 - AluSx SINE Alu -4 308 1 232 273 65 0 chr4 1061982 1062059 -201266288 + L1ME3A LINE L1 6051 6132 -38 416 270 94 56 chr4 1062091 1062413 -201265934 + L1MDa LINE L1 3235 3609 -2931 1177 244 4 8 chr4 1062413 1062651 -201265696 + MER8 DNA MER2_type 1 237 -2 416 270 94 56 chr4 1062651 1062664 -201265683 + L1MDa LINE L1 3609 3620 -2920 338 83 0 0 chr4 1062676 1062724 -201265623 + AluYb8 SINE Alu 84 131 -177 1576 55 0 0 chr4 1062756 1062938 -201265409 + AluY SINE Alu 33 214 -97 2255 176 117 4 chr4 1063058 1063552 -201264795 - L1MB4 LINE L1 -8 6172 5623 565 238 171 6 chr4 1063553 1063734 -201264613 + LTR16A1 LTR ERVL 247 457 0 2386 107 3 0 chr4 1064133 1064443 -201263904 + AluSx SINE Alu 1 311 -1 198 258 40 113 chr4 1064968 1065092 -201263255 - MIR SINE MIR -111 151 37 258 0 30 0 chr4 1065232 1065265 -201263082 + (TTTG)n Simple_repeat Simple_repeat 2 116 0 2174 119 0 3 chr4 1065265 1065547 -201262800 - AluSx SINE Alu -9 303 1 951 254 82 21 chr4 1065631 1066212 -201262135 - L1ME LINE L1 -3750 2465 1892 560 269 14 30 chr4 1066224 1066443 -201261904 - L1ME LINE L1 -4216 2000 1423 * 4541 171 22 30 chr4 1066430 1067012 -201261335 - L1MB1 LINE L1 -1 6167 5582 2019 105 84 3 chr4 1067012 1067297 -201261050 - AluSg1 SINE Alu -1 308 1 4541 171 22 30 chr4 1067297 1068120 -201260227 - L1MB1 LINE L1 -586 5582 4772 2002 126 22 41 chr4 1068120 1068438 -201259909 - AluSx SINE Alu 0 312 1 4541 171 22 30 chr4 1068438 1068486 -201259861 - L1MB1 LINE L1 -1396 4772 4725 6817 175 34 14 chr4 1068492 1069495 -201258852 + L1 LINE L1 3255 4299 -1847 2146 96 21 11 chr4 1069495 1069798 -201258549 + AluY SINE Alu 1 306 0 6817 175 34 14 chr4 1069798 1070260 -201258087 + L1 LINE L1 4299 4750 -1396 686 264 89 84 chr4 1070369 1071101 -201257246 - L1ME LINE L1 -4896 1321 684 286 301 11 23 chr4 1071337 1071513 -201256834 - L1ME LINE L1 -5607 598 425 619 153 51 0 chr4 1071691 1071809 -201256538 + MSTD LTR MaLR 273 396 0 470 301 164 14 chr4 1071809 1072101 -201256246 + L2 LINE L2 2315 2650 -664 252 296 58 64 chr4 1072360 1072532 -201255815 + L2 LINE L2 3142 3312 -1 249 325 44 26 chr4 1072700 1072814 -201255533 + L3 LINE CR1 332 447 -1130 187 250 0 0 chr4 1073137 1073181 -201255166 + L3 LINE CR1 410 453 -1124 342 188 75 25 chr4 1073344 1073424 -201254923 - L2 LINE L2 -37 3235 3152 337 294 59 13 chr4 1074095 1074248 -201254099 + L3 LINE CR1 1195 1354 -223 2239 112 3 32 chr4 1074497 1074810 -201253537 - AluSx SINE Alu -8 304 1 6002 222 82 70 chr4 1075104 1076736 -201251611 - MER52A LTR ERV1 0 1755 104 1056 203 121 4 chr4 1076798 1077054 -201251293 - MER52A LTR ERV1 -1469 286 1 470 261 85 71 chr4 1077383 1077594 -201250753 - MIR SINE MIR -21 241 28 198 0 0 0 chr4 1077922 1077944 -201250403 + (T)n Simple_repeat Simple_repeat 1 22 0 259 291 13 32 chr4 1079025 1079183 -201249164 + G-rich Low_complexity Low_complexity 3 157 0 * 297 222 16 60 chr4 1079095 1079366 -201248981 + (TGGG)n Simple_repeat Simple_repeat 1 259 0 199 337 36 0 chr4 1079426 1079509 -201248838 + MIR3 SINE MIR 114 199 -9 858 276 56 0 chr4 1080267 1080499 -201247848 + MIR SINE MIR 8 252 -10 429 308 19 30 chr4 1080688 1080951 -201247396 - L1MC5 LINE L1 -215 7746 7487 610 237 28 96 chr4 1081462 1081753 -201246594 - L1MC5 LINE L1 -844 7117 6847 413 304 55 55 chr4 1081802 1082019 -201246328 - L1MC4a LINE L1 -1137 6671 6455 14602 125 27 12 chr4 1082039 1083848 -201244499 - Tigger1 DNA MER2_type 0 2418 564 1838 144 34 27 chr4 1083848 1084140 -201244207 + AluJo SINE Alu 1 294 -18 14602 125 27 12 chr4 1084140 1084705 -201243642 - Tigger1 DNA MER2_type -1854 564 9 374 269 12 76 chr4 1084827 1084998 -201243349 - L1MC4a LINE L1 -1537 6271 6112 3171 227 111 48 chr4 1084998 1085846 -201242501 + L1MEc LINE L1 2179 2972 -3243 1606 145 0 9 chr4 1085846 1086074 -201242273 + AluSg/x SINE Alu 75 300 -12 3171 227 111 48 chr4 1086074 1086414 -201241933 + L1MEc LINE L1 2972 3289 -2926 1466 205 28 11 chr4 1086414 1086697 -201241650 + AluJb SINE Alu 1 288 -14 3171 227 111 48 chr4 1086697 1087036 -201241311 + L1MEc LINE L1 3289 3753 -2462 2223 98 16 16 chr4 1087129 1087434 -201240913 - AluSx SINE Alu -7 305 1 253 264 112 8 chr4 1087458 1087583 -201240764 - HAL1 LINE L1 -2280 227 90 587 275 104 40 chr4 1087633 1087943 -201240404 - L1MEd LINE L1 -4502 1627 1338 2523 68 6 6 chr4 1087943 1088254 -201240093 - AluY SINE Alu 0 311 1 587 275 104 40 chr4 1088254 1088834 -201239513 - L1MEd LINE L1 -4791 1338 692 35 41 0 0 chr4 1096278 1096327 -201232020 + GC_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr4 1097687 1097708 -201230639 + GC_rich Low_complexity Low_complexity 1 21 0 515 96 48 10 chr4 1097921 1098025 -201230322 + C-rich Low_complexity Low_complexity 1 108 0 181 238 71 0 chr4 1098685 1098727 -201229620 + MER5B DNA MER1_type 7 51 -127 382 216 104 8 chr4 1098742 1098867 -201229480 + L1MC4a LINE L1 6124 6260 -1548 1451 220 20 41 chr4 1098935 1098987 -201229360 - Charlie1 DNA MER1_type -6 2755 2703 1678 114 35 98 chr4 1098987 1099286 -201229061 + AluJb SINE Alu 1 281 -31 2277 110 0 0 chr4 1099286 1099585 -201228762 + AluSx SINE Alu 14 312 0 1678 114 35 98 chr4 1099585 1099601 -201228746 + AluJb SINE Alu 281 296 -16 1451 220 20 41 chr4 1099601 1099939 -201228408 - Charlie1 DNA MER1_type -58 2703 2373 333 191 0 31 chr4 1101450 1101784 -201226563 + (TTCA)n Simple_repeat Simple_repeat 1 323 0 524 130 0 53 chr4 1101808 1101977 -201226370 + (TTCA)n Simple_repeat Simple_repeat 3 162 0 242 303 45 8 chr4 1103523 1103655 -201224692 + L2 LINE L2 2837 2973 -340 6095 224 61 20 chr4 1104548 1106545 -201221802 + L1M4 LINE L1 9 2096 -4550 11524 136 77 9 chr4 1106554 1108057 -201220290 + L1M4c LINE L1 20 1724 -4660 1979 90 115 4 chr4 1108057 1108335 -201220012 + AluSq SINE Alu 1 309 -4 11524 136 77 9 chr4 1108335 1109037 -201219310 + L1M4c LINE L1 1724 2376 -4008 532 181 0 0 chr4 1109037 1109131 -201219216 - AluJ/FRAM SINE Alu -3 309 216 2641 192 30 3 chr4 1109244 1109811 -201218536 + L1MB3 LINE L1 5586 6167 -16 458 298 31 31 chr4 1109828 1110120 -201218227 - L1M4c LINE L1 -4144 2240 1949 2064 113 26 29 chr4 1110195 1110506 -201217841 + AluSx SINE Alu 1 310 -2 334 257 44 53 chr4 1110528 1110734 -201217613 + L1M4 LINE L1 2514 2717 -3929 4151 227 63 49 chr4 1110754 1111650 -201216697 + L1M4 LINE L1 2771 3653 -2991 1863 130 72 10 chr4 1111650 1111942 -201216405 + AluJb SINE Alu 1 310 -2 4151 227 63 49 chr4 1111942 1111982 -201216365 + L1M4 LINE L1 3653 3691 -2953 2289 103 0 7 chr4 1111982 1112283 -201216064 + AluY SINE Alu 1 299 -12 4151 227 63 49 chr4 1112283 1112887 -201215460 + L1M4 LINE L1 3691 4334 -2310 3189 221 25 30 chr4 1112892 1113772 -201214575 + L1M4 LINE L1 4642 5517 -1127 284 292 109 22 chr4 1114333 1114470 -201213877 + MIR3 SINE MIR 18 166 -42 251 326 34 14 chr4 1115296 1115443 -201212904 + (CA)n Simple_repeat Simple_repeat 1 150 0 226 307 12 42 chr4 1115876 1116042 -201212305 + G-rich Low_complexity Low_complexity 3 163 0 26 50 0 0 chr4 1116366 1116406 -201211941 + AT_rich Low_complexity Low_complexity 1 40 0 1082 219 26 0 chr4 1117778 1118011 -201210336 - MLT1E2 LTR MaLR 0 626 388 236 242 15 15 chr4 1118022 1118088 -201210259 - MLT1E1 LTR MaLR -530 124 59 2307 150 20 60 chr4 1118109 1118555 -201209792 - MSTC LTR MaLR 0 428 1 284 278 14 0 chr4 1119166 1119238 -201209109 + L2 LINE L2 2553 2625 -689 223 186 0 29 chr4 1119251 1119321 -201209026 + (TA)n Simple_repeat Simple_repeat 1 68 0 414 234 32 60 chr4 1119327 1119575 -201208772 - L1ME LINE L1 -404 5717 5416 1071 205 4 39 chr4 1120670 1120904 -201207443 + AluJb SINE Alu 74 299 -13 7040 107 25 21 chr4 1120907 1122147 -201206200 - HSMAR2 DNA Mariner -55 1247 3 195 100 0 0 chr4 1122801 1122831 -201205516 + (A)n Simple_repeat Simple_repeat 1 30 0 477 271 26 42 chr4 1122890 1123082 -201205265 + MIR SINE MIR 30 218 -44 2266 131 50 77 chr4 1123812 1124256 -201204091 + MSTB1 LTR MaLR 1 432 0 259 252 93 0 chr4 1124812 1124919 -201203428 - L2 LINE L2 -1 3312 3196 1214 207 29 19 chr4 1125185 1125494 -201202853 + MLT1B LTR MaLR 79 390 0 654 251 55 42 chr4 1125535 1125842 -201202505 - LTR37A LTR ERV1 -111 315 5 281 275 0 11 chr4 1126752 1126843 -201201504 - MLT1F1 LTR MaLR 0 567 478 345 315 0 0 chr4 1127016 1127194 -201201153 + C-rich Low_complexity Low_complexity 1 178 0 970 150 23 6 chr4 1130369 1130542 -201197805 - AluJo SINE Alu -125 187 12 297 284 68 34 chr4 1130835 1130983 -201197364 + MIR3 SINE MIR 21 173 -35 969 356 87 73 chr4 1131895 1132384 -201195963 + L1M4 LINE L1 2734 3215 -2931 1917 158 10 3 chr4 1132384 1132694 -201195653 + AluSx SINE Alu 1 312 0 969 356 87 73 chr4 1132694 1133733 -201194614 + L1M4 LINE L1 3215 4288 -1858 2111 120 7 0 chr4 1133733 1134041 -201194306 + AluSq SINE Alu 1 310 -3 969 356 87 73 chr4 1134041 1134131 -201194216 + L1M4 LINE L1 4288 4375 -1771 267 289 160 5 chr4 1134660 1134816 -201193531 + MIR SINE MIR 10 187 -72 2311 77 0 3 chr4 1136203 1136500 -201191847 - AluY SINE Alu -15 296 1 895 206 12 6 chr4 1136553 1136723 -201191624 - L1MB7 LINE L1 -10 6174 6004 328 270 0 63 chr4 1136898 1137024 -201191323 - MSTB1 LTR MaLR -314 118 1 266 133 0 0 chr4 1137068 1137113 -201191234 - MLT2A2 LTR ERVL -2 451 407 594 266 132 20 chr4 1137125 1137537 -201190810 - MLT-int LTR MaLR -381 1354 841 680 199 15 0 chr4 1137721 1137857 -201190490 + MLT1A1 LTR MaLR 227 364 -1 1595 265 54 17 chr4 1137881 1138486 -201189861 - L1MB7 LINE L1 -187 5997 5335 2158 112 0 3 chr4 1138486 1138789 -201189558 - AluSx SINE Alu -10 302 1 1595 265 54 17 chr4 1138789 1138857 -201189490 - L1MB7 LINE L1 -849 5335 5271 216 291 25 0 chr4 1143453 1143532 -201184815 + (CA)n Simple_repeat Simple_repeat 1 81 0 219 256 166 25 chr4 1144778 1144977 -201183370 + L2 LINE L2 2355 2581 -733 201 39 0 0 chr4 1146483 1146509 -201181838 + (A)n Simple_repeat Simple_repeat 1 26 0 186 266 0 0 chr4 1149936 1150015 -201178332 + (CA)n Simple_repeat Simple_repeat 2 80 0 240 355 58 11 chr4 1152310 1152735 -201175612 + L1ME LINE L1 1267 1877 -4954 2199 74 0 0 chr4 1152754 1153038 -201175309 + AluSg SINE Alu 11 294 -16 489 240 58 90 chr4 1153358 1153670 -201174677 + L1ME LINE L1 2759 3035 -3906 1532 179 29 18 chr4 1153670 1153794 -201174553 + AluJo SINE Alu 1 122 -190 195 42 0 0 chr4 1153794 1153818 -201174529 + (TAA)n Simple_repeat Simple_repeat 2 25 0 1532 179 29 18 chr4 1153818 1153972 -201174375 + AluJo SINE Alu 122 282 -30 489 240 58 90 chr4 1153972 1154101 -201174246 + L1ME LINE L1 3035 3167 -3774 433 275 89 59 chr4 1154093 1154329 -201174018 + L1ME LINE L1 4803 5045 -1896 * 556 235 67 0 chr4 1154329 1154448 -201173899 - FLAM_C SINE Alu -16 127 1 242 287 35 0 chr4 1154458 1154545 -201173802 + L1ME LINE L1 5075 5164 -1777 2122 113 20 0 chr4 1154545 1154838 -201173509 + AluSx SINE Alu 1 299 -13 633 129 20 0 chr4 1154838 1154939 -201173408 + AluSg/x SINE Alu 208 310 0 419 278 93 5 chr4 1154939 1155133 -201173214 + L1ME LINE L1 5177 5387 -1554 641 297 154 22 chr4 1155135 1155674 -201172673 + L1ME LINE L1 5420 6029 -912 552 282 114 16 chr4 1155801 1156174 -201172173 + L1ME LINE L1 6164 6594 -363 225 154 0 0 chr4 1156480 1156519 -201171828 + GA-rich Low_complexity Low_complexity 2 40 0 218 205 0 0 chr4 1158428 1158467 -201169880 + (CA)n Simple_repeat Simple_repeat 1 39 0 194 302 35 0 chr4 1158473 1158559 -201169788 + L2 LINE L2 3155 3243 -29 218 204 10 92 chr4 1158929 1159125 -201169222 + (TG)n Simple_repeat Simple_repeat 1 180 0 252 288 16 38 chr4 1161885 1162069 -201166278 + (TG)n Simple_repeat Simple_repeat 1 180 0 601 231 109 7 chr4 1166676 1166823 -201161524 - AluJb SINE Alu -10 302 141 23 0 0 0 chr4 1166897 1166920 -201161427 + AT_rich Low_complexity Low_complexity 1 23 0 2127 130 0 0 chr4 1166929 1167228 -201161119 - AluSx SINE Alu -9 303 5 432 315 46 5 chr4 1168438 1168654 -201159693 - MLT1J LTR MaLR -16 495 271 470 359 53 18 chr4 1169606 1169946 -201158401 - L1MD2 LINE L1 -444 5915 5564 308 236 101 0 chr4 1178565 1178654 -201149693 + L1MC3 LINE L1 7685 7782 -3 250 264 60 36 chr4 1180163 1180330 -201148017 + (CAGGG)n Simple_repeat Simple_repeat 4 174 0 252 245 40 20 chr4 1183378 1183529 -201144818 + (CG)n Simple_repeat Simple_repeat 1 154 0 246 184 37 59 chr4 1183611 1183747 -201144600 + (CCGCG)n Simple_repeat Simple_repeat 4 136 0 23 0 0 0 chr4 1183758 1183781 -201144566 + GC_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr4 1183865 1183885 -201144462 + (CGGGG)n Simple_repeat Simple_repeat 2 21 0 2212 116 0 3 chr4 1186728 1187030 -201141317 - AluSq SINE Alu -12 301 1 2091 155 112 4 chr4 1187124 1187589 -201140758 - L1MA8 LINE L1 -6 6285 5771 199 400 22 0 chr4 1187631 1187721 -201140626 + MIR SINE MIR 97 188 -74 1319 227 96 14 chr4 1187877 1188243 -201140104 - MSTD LTR MaLR 0 396 1 824 285 112 75 chr4 1188339 1188780 -201139567 + L1MEd LINE L1 332 756 -5660 935 120 0 0 chr4 1188780 1188905 -201139442 - FLAM_C SINE Alu -8 125 1 824 285 112 75 chr4 1188905 1189620 -201138727 + L1MEd LINE L1 756 1530 -4886 321 353 78 41 chr4 1189642 1189860 -201138487 + L1MEd LINE L1 1407 1632 -4794 704 244 73 23 chr4 1189867 1190145 -201138202 - MLT1E LTR MaLR -2 591 235 6056 211 92 56 chr4 1190371 1190803 -201137544 - L1MB3 LINE L1 -7 6176 5761 2627 100 28 17 chr4 1190803 1191163 -201137184 + THE1B LTR MaLR 1 364 0 6056 211 92 56 chr4 1191163 1191419 -201136928 - L1MB3 LINE L1 -422 5761 5516 192 97 0 0 chr4 1191419 1191450 -201136897 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6056 211 92 56 chr4 1191450 1191500 -201136847 - L1MB3 LINE L1 -667 5516 5469 1467 172 36 20 chr4 1191500 1191687 -201136660 - AluJo SINE Alu 0 312 117 225 0 0 0 chr4 1191687 1191712 -201136635 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 1467 172 36 20 chr4 1191712 1191827 -201136520 - AluJo SINE Alu -195 117 5 6056 211 92 56 chr4 1191827 1193437 -201134910 - L1MB3 LINE L1 -714 5469 3919 1705 164 42 0 chr4 1193437 1193723 -201134624 - AluJb SINE Alu -14 298 1 6056 211 92 56 chr4 1193723 1193739 -201134608 - L1MB3 LINE L1 -2264 3919 3905 1928 151 10 10 chr4 1193739 1194050 -201134297 - AluJo SINE Alu -1 311 1 6056 211 92 56 chr4 1194050 1195118 -201133229 - L1MB3 LINE L1 -2278 3905 2614 191 373 20 59 chr4 1195432 1195636 -201132711 - MIR SINE MIR -34 228 33 2015 226 28 67 chr4 1196642 1197067 -201131280 - L1MC/D LINE L1 -466 5776 5336 1907 178 36 0 chr4 1197067 1197399 -201130948 + MER2 DNA MER2_type 1 344 0 2015 226 28 67 chr4 1197399 1198093 -201130254 - L1MC/D LINE L1 -906 5336 4617 2122 104 0 4 chr4 1198093 1198407 -201129940 - AluSc SINE Alu 0 313 1 1791 171 0 16 chr4 1198407 1198712 -201129635 - AluJo SINE Alu -12 300 1 2015 226 28 67 chr4 1198712 1198789 -201129558 - L1MC/D LINE L1 -1534 4708 4630 2330 103 0 0 chr4 1198795 1199097 -201129250 - AluSq SINE Alu -11 302 1 1065 210 186 35 chr4 1199111 1199234 -201129113 + LTR54B LTR ERV1 1 104 -394 1582 176 29 0 chr4 1199234 1199532 -201128815 + AluJo SINE Alu 1 306 0 1065 210 186 35 chr4 1199532 1199807 -201128540 + LTR54B LTR ERV1 104 472 -26 624 151 123 0 chr4 1199807 1199913 -201128434 + FLAM_A SINE Alu 1 119 -14 1065 210 186 35 chr4 1199913 1199941 -201128406 + LTR54B LTR ERV1 472 494 -4 1621 181 7 11 chr4 1200670 1200957 -201127390 + AluJo SINE Alu 1 286 -26 5867 219 32 56 chr4 1201524 1202071 -201126276 - L1M4 LINE L1 -1449 4933 4374 7283 94 27 17 chr4 1202071 1203068 -201125279 - LTR13 LTR ERVK 0 1007 1 5867 219 32 56 chr4 1203068 1203183 -201125164 - L1M4 LINE L1 -2008 4374 4258 225 0 0 0 chr4 1203183 1203208 -201125139 + (TG)n Simple_repeat Simple_repeat 2 26 0 2210 80 0 7 chr4 1203208 1203495 -201124852 - AluSp SINE Alu -28 285 1 1581 191 3 16 chr4 1203498 1203801 -201124546 - AluJb SINE Alu -13 299 1 5867 219 32 56 chr4 1203801 1204662 -201123685 - L1M4 LINE L1 -2125 4257 3377 1640 143 108 7 chr4 1204662 1204941 -201123406 - AluJb SINE Alu -5 307 1 5867 219 32 56 chr4 1204941 1205124 -201123223 - L1M4 LINE L1 -3005 3377 3191 3400 56 2 43 chr4 1205124 1205526 -201122821 - L1PA8 LINE L1 -2 6170 5788 2403 79 0 13 chr4 1205526 1205841 -201122506 - AluY SINE Alu 0 311 1 3400 56 2 43 chr4 1205841 1205905 -201122442 - L1PA8 LINE L1 -384 5788 5723 5867 219 32 56 chr4 1205905 1206180 -201122167 - L1M4 LINE L1 -3191 3191 2997 2951 92 57 7 chr4 1206180 1206603 -201121744 - MLT2A1 LTR ERVL 0 444 1 5867 219 32 56 chr4 1206603 1206746 -201121601 - L1M4 LINE L1 -3385 2997 2852 1732 221 79 16 chr4 1207562 1208588 -201119759 - L1M4 LINE L1 -3473 2909 1723 * 2388 229 33 24 chr4 1208584 1208606 -201119741 + L1MB4 LINE L1 4685 4705 -1475 2265 83 7 3 chr4 1208606 1208907 -201119440 + AluY SINE Alu 1 302 -9 2388 229 33 24 chr4 1208907 1209511 -201118836 + L1MB4 LINE L1 4705 5337 -843 2162 93 35 0 chr4 1209511 1209801 -201118546 - AluSx SINE Alu -12 300 1 2388 229 33 24 chr4 1209801 1210291 -201118056 + L1MB4 LINE L1 5337 5821 -359 420 286 11 6 chr4 1210289 1210464 -201117883 + L1M4 LINE L1 2695 2870 -3276 * 1663 209 32 0 chr4 1210470 1210814 -201117533 + L1MB4 LINE L1 5826 6180 0 2036 256 72 1 chr4 1210992 1211889 -201116458 - L1MB5 LINE L1 -133 6041 5080 248 303 0 34 chr4 1211940 1212118 -201116229 + (CCGCT)n Simple_repeat Simple_repeat 2 173 0 * 297 179 0 77 chr4 1212040 1212443 -201115904 + CT-rich Low_complexity Low_complexity 1 372 0 262 276 10 20 chr4 1212853 1212951 -201115396 + L1M4c LINE L1 1233 1329 -5055 2768 43 0 20 chr4 1212951 1213302 -201115045 + L1PA5 LINE L1 5811 6154 0 1142 123 0 0 chr4 1213359 1213514 -201114833 + AluSx SINE Alu 1 155 -157 756 264 81 4 chr4 1213522 1213757 -201114590 + MER45B DNA AcHobo 244 496 -544 949 143 0 0 chr4 1213761 1213901 -201114446 + AluSx SINE Alu 148 287 -23 1532 296 77 0 chr4 1213955 1214539 -201113808 + MER45B DNA AcHobo 206 834 -206 303 151 43 158 chr4 1214540 1214566 -201113781 + MER45B DNA AcHobo 777 804 -777 2202 96 3 6 chr4 1214566 1214878 -201113469 + AluY SINE Alu 1 311 0 303 151 43 158 chr4 1214878 1214990 -201113357 + MER45B DNA AcHobo 804 899 -141 2010 89 37 0 chr4 1214994 1215113 -201113234 + AluSc SINE Alu 1 114 -203 188 0 74 0 chr4 1215113 1215140 -201113207 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2010 89 37 0 chr4 1215140 1215327 -201113020 + AluSc SINE Alu 114 317 0 638 121 0 0 chr4 1215333 1215424 -201112923 + AluSg/x SINE Alu 210 300 -12 1236 161 28 117 chr4 1215435 1215863 -201112484 + L1M1 LINE L1 5178 5579 -724 477 49 99 0 chr4 1216842 1216923 -201111424 + L1M1 LINE L1 5574 5662 -641 1498 140 0 9 chr4 1217207 1217450 -201110897 + AluJb SINE Alu 64 304 0 370 273 28 103 chr4 1218048 1218301 -201110046 + MER21B LTR ERV1 13 246 -617 686 263 64 11 chr4 1218387 1218704 -201109643 + MER21B LTR ERV1 466 806 -125 557 112 0 78 chr4 1218736 1218852 -201109495 + MER4D LTR ERV1 1 107 -796 3220 187 103 72 chr4 1219007 1219712 -201108635 - LTR28 LTR ERV1 -69 951 209 2436 68 0 7 chr4 1219712 1220019 -201108328 + AluY SINE Alu 1 305 -6 3220 187 103 72 chr4 1220019 1220235 -201108112 - LTR28 LTR ERV1 -811 209 1 * 3834 119 37 78 chr4 1220235 1220591 -201107756 + MER4D LTR ERV1 103 472 -400 2248 86 16 3 chr4 1220591 1220895 -201107452 - AluSc SINE Alu -1 308 1 3834 119 37 78 chr4 1220895 1221341 -201107006 + MER4D LTR ERV1 472 872 0 518 268 131 13 chr4 1221644 1221915 -201106432 + L1ME3 LINE L1 5862 6164 0 224 352 138 19 chr4 1223822 1224032 -201104315 + MIR SINE MIR 2 236 -26 674 178 23 23 chr4 1224143 1224272 -201104075 - AluJb SINE Alu -180 132 4 545 165 189 43 chr4 1225516 1225680 -201102667 - MER20 DNA MER1_type -31 188 1 1758 93 4 8 chr4 1225863 1226110 -201102237 - AluSx SINE Alu -3 309 64 1012 167 6 0 chr4 1226220 1226388 -201101959 + AluJb SINE Alu 133 301 -11 208 349 64 9 chr4 1226659 1226768 -201101579 + L3b LINE CR1 1271 1385 -198 248 137 20 0 chr4 1227768 1227819 -201100528 + G-rich Low_complexity Low_complexity 2 53 0 183 355 153 16 chr4 1228357 1228540 -201099807 + L2 LINE L2 1166 1373 -1941 1287 111 0 0 chr4 1228672 1229030 -201099317 + (G)n Simple_repeat Simple_repeat 1 359 0 184 261 68 57 chr4 1231530 1231618 -201096729 + L2 LINE L2 1891 1979 -1335 22 0 0 0 chr4 1232009 1232031 -201096316 + GC_rich Low_complexity Low_complexity 1 22 0 506 239 163 38 chr4 1234366 1234575 -201093772 - MER58 DNA MER1_type -2182 238 4 639 254 0 8 chr4 1235843 1235977 -201092370 + FLAM_A SINE Alu 2 134 -8 1092 128 6 28 chr4 1236085 1236264 -201092083 - AluSg/x SINE Alu -3 309 135 2190 103 3 0 chr4 1236264 1236556 -201091791 - AluY SINE Alu -18 293 1 2484 60 0 13 chr4 1236566 1236881 -201091466 - AluY SINE Alu 0 311 1 1358 214 30 4 chr4 1237857 1238128 -201090219 + AluJo SINE Alu 1 278 -34 194 307 227 56 chr4 1241024 1241610 -201086737 + L2 LINE L2 1796 2481 -833 258 353 88 20 chr4 1241911 1242115 -201086232 + L2 LINE L2 3092 3309 -4 212 330 113 0 chr4 1242559 1242665 -201085682 + L2 LINE L2 1461 1578 -1736 209 326 111 35 chr4 1242857 1243029 -201085318 + L2 LINE L2 1829 2013 -1301 793 308 101 38 chr4 1243034 1243226 -201085121 + L2 LINE L2 2127 2305 -1009 1543 190 11 0 chr4 1243226 1243536 -201084811 - AluJo SINE Alu 0 313 1 793 308 101 38 chr4 1243536 1243845 -201084502 + L2 LINE L2 2305 2661 -653 225 336 99 0 chr4 1243966 1244097 -201084250 + L2 LINE L2 2886 3029 -284 211 289 214 27 chr4 1244110 1244297 -201084050 + L2 LINE L2 2998 3219 -94 23 0 0 0 chr4 1244327 1244350 -201083997 + AT_rich Low_complexity Low_complexity 1 23 0 926 324 140 20 chr4 1245002 1245765 -201082582 + Charlie7 DNA MER1_type 371 1225 -1387 846 226 32 16 chr4 1245901 1246087 -201082260 + AluJo SINE Alu 123 311 -1 1285 234 72 37 chr4 1246189 1246647 -201081700 + L1MB7 LINE L1 3454 3927 -2219 434 163 0 12 chr4 1246647 1246727 -201081620 + MLT1A2 LTR MaLR 296 374 0 1665 236 168 27 chr4 1246737 1246838 -201081509 + L1MB7 LINE L1 5213 5298 -886 2203 68 3 20 chr4 1246838 1247134 -201081213 - AluY SINE Alu -20 291 1 1665 236 168 27 chr4 1247134 1247461 -201080886 + L1MB7 LINE L1 5298 5578 -606 2021 97 7 52 chr4 1247461 1247769 -201080578 + AluSc SINE Alu 1 294 -15 1665 236 168 27 chr4 1247769 1248165 -201080182 + L1MB7 LINE L1 5578 6184 0 195 167 28 28 chr4 1248249 1248321 -201080026 + (CAGGG)n Simple_repeat Simple_repeat 4 75 0 565 196 36 29 chr4 1248507 1248645 -201079702 + MER33 DNA MER1_type 27 165 -159 801 188 0 7 chr4 1248645 1248789 -201079558 - FLAM_C SINE Alu 0 143 1 2187 85 7 3 chr4 1248800 1249094 -201079253 - AluY SINE Alu -16 295 1 450 172 117 14 chr4 1249102 1249247 -201079100 + MER33 DNA MER1_type 157 316 -8 339 217 24 12 chr4 1249561 1249644 -201078703 - MER20 DNA MER1_type -135 84 1 311 274 263 5 chr4 1249733 1249919 -201078428 - L1ME LINE L1 -348 5818 5585 269 254 0 0 chr4 1250071 1250130 -201078217 + (CGTG)n Simple_repeat Simple_repeat 1 59 0 908 279 75 53 chr4 1250131 1250582 -201077765 - MLT2B1 LTR ERVL -58 462 2 316 227 31 0 chr4 1250591 1250688 -201077659 - L1ME LINE L1 -728 5436 5337 1162 176 0 10 chr4 1250688 1250887 -201077460 + AluSg/x SINE Alu 105 301 -11 1309 290 77 6 chr4 1250911 1251445 -201076902 - L1ME LINE L1 -850 5296 4725 1200 233 40 20 chr4 1251481 1251883 -201076464 - L1MB2 LINE L1 -1 6182 5787 1504 230 101 7 chr4 1251894 1252350 -201075997 - MLT2B2 LTR ERVL -15 500 2 1582 220 51 3 chr4 1252361 1252693 -201075654 - MER7A DNA MER2_type 0 346 1 411 236 126 8 chr4 1252693 1252809 -201075538 - L1MB2 LINE L1 -387 5784 5650 293 263 42 34 chr4 1252946 1253064 -201075283 - L1MB2 LINE L1 -706 5477 5359 227 120 250 10 chr4 1253165 1253265 -201075082 - L1MB2 LINE L1 -920 5226 5103 260 272 0 12 chr4 1253528 1253609 -201074738 - HAL1 LINE L1 -847 1660 1581 2177 108 7 3 chr4 1256745 1257050 -201071297 - AluSx SINE Alu -6 306 1 438 326 97 81 chr4 1257491 1257770 -201070577 + L1MEd LINE L1 561 834 -1664 1665 137 32 11 chr4 1257770 1258054 -201070293 + AluJo SINE Alu 1 290 -22 438 326 97 81 chr4 1258054 1258117 -201070230 + L1MEd LINE L1 834 895 -1603 1606 143 37 0 chr4 1258117 1258362 -201069985 + AluJb SINE Alu 35 288 -24 2063 90 35 7 chr4 1258368 1258658 -201069689 + AluSx SINE Alu 1 298 -14 438 326 97 81 chr4 1258658 1259175 -201069172 + L1MEd LINE L1 899 1523 -975 364 267 30 0 chr4 1259219 1259320 -201069027 - MER3 DNA MER1_type -76 133 30 487 301 65 38 chr4 1259327 1259513 -201068834 + L1MEd LINE L1 2320 2510 -3619 394 230 34 34 chr4 1261216 1261394 -201066953 + (CCCCAG)n Simple_repeat Simple_repeat 1 178 0 * 449 254 0 28 chr4 1261280 1261461 -201066886 + C-rich Low_complexity Low_complexity 4 179 0 1571 179 3 7 chr4 1263229 1263525 -201064822 + AluJo SINE Alu 1 295 -17 731 175 0 32 chr4 1263786 1263912 -201064435 + FRAM SINE Alu 38 159 -17 417 306 82 100 chr4 1263985 1264978 -201063369 + L1M4c LINE L1 800 1209 -1566 2282 81 0 0 chr4 1264978 1265275 -201063072 + AluY SINE Alu 1 297 -14 417 306 82 100 chr4 1265275 1265702 -201062645 + L1M4c LINE L1 1209 1642 -1133 2223 93 27 0 chr4 1267096 1267397 -201060950 - AluSc SINE Alu 0 309 1 23 110 0 0 chr4 1269143 1269243 -201059104 + GC_rich Low_complexity Low_complexity 1 100 0 1936 67 4 0 chr4 1274753 1274993 -201053354 - AluSg SINE Alu -69 241 1 1485 184 52 10 chr4 1276806 1277094 -201051253 + AluJo SINE Alu 1 300 -12 1802 159 3 20 chr4 1277425 1277726 -201050621 + AluJo SINE Alu 1 296 -16 209 269 60 18 chr4 1279327 1279494 -201048853 + (TCTCTG)n Simple_repeat Simple_repeat 4 177 0 235 294 49 12 chr4 1280281 1280444 -201047903 + (CGGGG)n Simple_repeat Simple_repeat 2 170 0 227 264 55 22 chr4 1282734 1282825 -201045522 - L1ME LINE L1 -450 5712 5619 1913 259 63 23 chr4 1282972 1283343 -201045004 - L1ME2 LINE L1 -8 6225 5870 2054 93 0 0 chr4 1283343 1283602 -201044745 - AluSc SINE Alu -50 259 1 1913 259 63 23 chr4 1283602 1283955 -201044392 - L1ME2 LINE L1 -363 5870 5472 1456 281 52 38 chr4 1284067 1284696 -201043651 - L1ME2 LINE L1 -942 5273 4631 1525 219 84 30 chr4 1284696 1285065 -201043282 - MLT1B LTR MaLR -1 389 1 1456 281 52 38 chr4 1285065 1285142 -201043205 - L1ME2 LINE L1 -1584 4631 4557 1843 88 0 4 chr4 1285170 1285408 -201042939 + AluSg SINE Alu 55 291 -19 710 274 81 27 chr4 1285410 1285819 -201042528 - L1ME2 LINE L1 -4603 1793 1363 2212 120 0 0 chr4 1285878 1286179 -201042168 + AluSx SINE Alu 1 301 -11 367 291 195 42 chr4 1286229 1286562 -201041785 - L2 LINE L2 -7 3306 2923 798 291 112 3 chr4 1286613 1286953 -201041394 - L2 LINE L2 -518 2796 2420 2163 79 0 0 chr4 1286981 1287258 -201041089 + AluSx SINE Alu 14 290 -22 259 396 7 21 chr4 1292327 1292471 -201035876 - MIR SINE MIR -20 242 101 25 0 0 0 chr4 1293828 1293853 -201034494 + AT_rich Low_complexity Low_complexity 1 25 0 437 215 47 0 chr4 1296823 1296930 -201031417 - LTR45 LTR ERV1 0 525 414 359 262 12 0 chr4 1296944 1297028 -201031319 - LTR45 LTR ERV1 -440 85 1 183 156 0 0 chr4 1301942 1301974 -201026373 + (TG)n Simple_repeat Simple_repeat 1 32 0 342 264 23 0 chr4 1302330 1302417 -201025930 - MER58A DNA MER1_type -18 89 1 315 0 0 0 chr4 1302940 1302975 -201025372 + (TG)n Simple_repeat Simple_repeat 2 36 0 1958 140 90 29 chr4 1303174 1303517 -201024830 - THE1B LTR MaLR 0 364 1 264 329 25 6 chr4 1303761 1303919 -201024428 - L1M4 LINE L1 -3772 2374 2214 318 398 59 5 chr4 1304685 1304871 -201023476 - HAL1 LINE L1 -838 1669 1474 2288 65 45 17 chr4 1304872 1305224 -201023123 - MLT2A1 LTR ERVL -69 375 14 755 280 0 11 chr4 1306745 1306934 -201021413 + MER5A DNA MER1_type 1 187 -2 1003 185 17 0 chr4 1306967 1307145 -201021202 + AluSg/x SINE Alu 130 310 0 199 330 11 34 chr4 1307466 1307554 -201020793 - MIR SINE MIR -157 105 20 506 157 24 0 chr4 1307655 1307738 -201020609 - AluJ/FRAM SINE Alu -8 304 220 300 424 8 4 chr4 1308641 1308884 -201019463 + MIR SINE MIR 8 251 -11 742 174 134 40 chr4 1309059 1309260 -201019087 + L1M4 LINE L1 5402 5621 -563 20407 32 18 0 chr4 1509269 1512380 -200815967 - L1PA4 LINE L1 -246 5909 2746 399 284 11 16 chr4 1512381 1512564 -200815783 + L1MEc LINE L1 2040 2221 -4175 5876 181 40 17 chr4 1512712 1513585 -200814762 - L1MC3 LINE L1 -13 7772 6860 243 0 0 0 chr4 1513585 1513612 -200814735 + (TG)n Simple_repeat Simple_repeat 1 27 0 5876 181 40 17 chr4 1513612 1513994 -200814353 - L1MC3 LINE L1 -925 6860 6488 22 0 0 0 chr4 1514053 1514075 -200814272 + AT_rich Low_complexity Low_complexity 1 22 0 1767 143 3 21 chr4 1514110 1514396 -200813951 - AluJb SINE Alu -31 281 1 419 266 32 19 chr4 1514560 1514714 -200813633 + L1M4 LINE L1 5 160 -6382 701 168 8 46 chr4 1514722 1514853 -200813494 + FLAM_C SINE Alu 5 130 -3 2172 83 0 3 chr4 1514880 1515181 -200813166 + AluY SINE Alu 1 300 -11 252 0 0 0 chr4 1516012 1516040 -200812307 + (TG)n Simple_repeat Simple_repeat 1 28 0 * 498 17 0 0 chr4 1516039 1516098 -200812249 + (GA)n Simple_repeat Simple_repeat 1 59 0 808 170 0 19 chr4 1517313 1517472 -200810875 - FAM SINE Alu -14 171 16 184 266 186 18 chr4 1517866 1517979 -200810368 + L2 LINE L2 3138 3269 -3 187 209 70 0 chr4 1518071 1518114 -200810233 - MIR SINE MIR -77 131 86 1380 199 21 7 chr4 1518431 1518718 -200809629 - AluJo SINE Alu -21 291 1 1630 152 8 0 chr4 1518733 1518996 -200809351 - AluJb SINE Alu -4 308 44 2223 67 7 24 chr4 1519080 1519378 -200808969 + AluY SINE Alu 1 293 -18 2181 85 3 3 chr4 1519393 1519686 -200808661 + AluY SINE Alu 1 293 -18 1572 175 11 3 chr4 1519873 1520158 -200808189 + AluJo SINE Alu 6 292 -20 2053 107 0 3 chr4 1520323 1520612 -200807735 + AluSx SINE Alu 11 298 -14 410 283 88 5 chr4 1521120 1521325 -200807022 + L2 LINE L2 2849 3070 -243 593 219 16 23 chr4 1521378 1521506 -200806841 + FRAM SINE Alu 42 168 -8 1765 111 16 82 chr4 1521529 1521681 -200806666 - AluSx SINE Alu -26 286 162 270 0 0 0 chr4 1521681 1521711 -200806636 + (TA)n Simple_repeat Simple_repeat 2 31 0 1765 111 16 82 chr4 1521711 1521864 -200806483 - AluSx SINE Alu -150 162 1 280 294 0 59 chr4 1521978 1522080 -200806267 + L2 LINE L2 3204 3299 -14 2349 46 0 3 chr4 1522663 1522975 -200805372 - AluY SINE Alu 0 311 1 315 0 0 0 chr4 1523281 1523316 -200805031 + (TG)n Simple_repeat Simple_repeat 2 36 0 321 317 58 10 chr4 1523696 1523800 -200804547 - MIR SINE MIR -133 129 21 822 229 132 50 chr4 1524049 1524533 -200803814 + L1MC5 LINE L1 7276 7799 -162 1045 153 9 65 chr4 1524621 1524711 -200803636 - AluJb SINE Alu -99 213 120 2261 75 0 10 chr4 1524711 1525019 -200803328 - AluY SINE Alu -6 305 1 1045 153 9 65 chr4 1525019 1525143 -200803204 - AluJb SINE Alu -192 120 11 379 232 97 53 chr4 1525636 1525839 -200802508 + MLT1I LTR MaLR 40 233 -176 2206 59 3 7 chr4 1525839 1526151 -200802196 + AluY SINE Alu 1 311 0 379 232 97 53 chr4 1526151 1526206 -200802141 + MLT1I LTR MaLR 233 284 -125 847 185 62 0 chr4 1526206 1526384 -200801963 + MER5A DNA MER1_type 1 189 0 379 232 97 53 chr4 1526384 1526404 -200801943 + MLT1I LTR MaLR 284 407 -2 218 318 38 51 chr4 1526404 1526640 -200801707 - L2 LINE L2 -681 2633 2401 309 276 103 62 chr4 1526728 1526806 -200801541 + L2 LINE L2 3014 3087 -185 2138 116 3 0 chr4 1526806 1527108 -200801239 + AluSx SINE Alu 1 303 -9 309 276 103 62 chr4 1527108 1527272 -200801075 + L2 LINE L2 3087 3266 -6 1703 164 0 4 chr4 1527573 1527848 -200800499 - AluJb SINE Alu -30 282 9 2095 118 0 0 chr4 1527855 1528151 -200800196 - AluSg SINE Alu -14 296 1 2319 80 3 6 chr4 1528286 1528597 -200799750 + AluSp SINE Alu 1 310 -3 254 216 87 101 chr4 1529635 1529659 -200798688 - HAL1 LINE L1 -117 2390 2367 1811 182 0 0 chr4 1529659 1529966 -200798381 - AluSx SINE Alu -5 307 1 254 216 87 101 chr4 1529966 1530009 -200798338 - HAL1 LINE L1 -140 2367 2325 2051 87 0 30 chr4 1530009 1530307 -200798040 + AluSc SINE Alu 1 289 -20 254 216 87 101 chr4 1530307 1530446 -200797901 - HAL1 LINE L1 -182 2325 2186 491 240 24 32 chr4 1530472 1530719 -200797628 - MLT1G1 LTR MaLR -30 565 241 420 239 42 19 chr4 1530806 1530928 -200797419 - MLT1G1 LTR MaLR -357 192 25 856 190 17 34 chr4 1530936 1531115 -200797232 - AluJo SINE Alu -10 302 127 731 246 168 73 chr4 1531155 1531590 -200796757 - HAL1 LINE L1 -358 2149 1757 2235 85 10 3 chr4 1531590 1531896 -200796451 + AluSx SINE Alu 1 308 -4 731 246 168 73 chr4 1531896 1532010 -200796337 - HAL1 LINE L1 -750 1757 1655 2092 105 6 13 chr4 1532010 1532324 -200796023 - AluSx SINE Alu 0 312 1 731 246 168 73 chr4 1532324 1532351 -200795996 - HAL1 LINE L1 -852 1655 1517 2195 91 7 0 chr4 1532360 1532656 -200795691 - AluSx SINE Alu -14 298 1 1678 154 14 3 chr4 1532667 1532952 -200795395 - AluJo SINE Alu -24 288 1 1930 106 10 26 chr4 1532962 1533264 -200795083 - AluSq SINE Alu -16 297 1 2216 160 67 13 chr4 1533281 1533743 -200794604 - L1MB7 LINE L1 -19 6165 5679 2509 48 0 10 chr4 1533744 1534058 -200794289 - AluY SINE Alu 0 311 1 2103 91 17 0 chr4 1534067 1534354 -200793993 - AluSq SINE Alu -21 292 1 1801 172 0 0 chr4 1534354 1534651 -200793696 - AluJb SINE Alu -15 297 1 2325 73 0 16 chr4 1535030 1535344 -200793003 + AluY SINE Alu 3 311 0 848 87 7 58 chr4 1535606 1535744 -200792603 - FLAM_C SINE Alu -2 131 1 2024 88 10 20 chr4 1536031 1536325 -200792022 - AluSg SINE Alu -19 291 1 1850 117 16 26 chr4 1536642 1536949 -200791398 + AluSx SINE Alu 1 304 -8 1635 167 27 3 chr4 1536987 1537286 -200791061 - AluJb SINE Alu -6 306 1 1287 181 7 86 chr4 1537393 1537696 -200790651 - AluJo SINE Alu -31 281 3 239 276 90 26 chr4 1537698 1537854 -200790493 - HAL1 LINE L1 -1067 1440 1275 1633 144 91 0 chr4 1537857 1538142 -200790205 + AluJb SINE Alu 1 311 -1 197 179 0 26 chr4 1538185 1538224 -200790123 + L2 LINE L2 3186 3223 -90 2531 162 59 10 chr4 1538230 1538723 -200789624 - L1MB3 LINE L1 -20 6163 5647 344 185 86 12 chr4 1538741 1538822 -200789525 + L2 LINE L2 3226 3312 -1 355 259 74 12 chr4 1538840 1539002 -200789345 - L1MEd LINE L1 -5033 1339 1168 384 246 127 21 chr4 1539461 1539603 -200788744 - MIR SINE MIR -92 170 14 1424 184 41 4 chr4 1539837 1540108 -200788239 - AluJo SINE Alu -31 281 1 551 166 14 35 chr4 1540152 1540297 -200788050 + CT-rich Low_complexity Low_complexity 4 145 0 1841 133 17 13 chr4 1540332 1540632 -200787715 + AluJb SINE Alu 3 303 -9 1547 168 13 36 chr4 1540640 1540944 -200787403 + AluJb SINE Alu 1 297 -15 540 196 107 0 chr4 1540951 1541063 -200787284 + AluJo/FLAM SINE Alu 2 125 -187 1915 135 26 0 chr4 1541063 1541367 -200786980 - AluSx SINE Alu 0 312 1 406 213 138 50 chr4 1541367 1541527 -200786820 - L1MEd LINE L1 -5002 1382 1209 1581 153 19 0 chr4 1541530 1541791 -200786556 - AluJo SINE Alu -10 302 37 2366 59 13 0 chr4 1541823 1542126 -200786221 + AluY SINE Alu 1 307 -4 571 234 194 6 chr4 1542141 1542316 -200786031 - L1MEd LINE L1 -5570 802 595 546 228 32 6 chr4 1542330 1542488 -200785859 - L1MEd LINE L1 -5878 494 333 689 273 48 0 chr4 1542723 1542932 -200785415 - MER20 DNA MER1_type 0 219 1 221 249 205 7 chr4 1543481 1543608 -200784739 + MIR SINE MIR 33 167 -41 203 303 50 50 chr4 1544911 1545030 -200783317 - MIR SINE MIR -141 121 3 207 0 0 0 chr4 1545665 1545688 -200782659 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1473 176 11 8 chr4 1545697 1545964 -200782383 - AluJo SINE Alu -44 268 1 422 190 0 0 chr4 1546054 1546133 -200782214 - FLAM_A SINE Alu -18 124 46 1309 114 21 0 chr4 1546333 1546526 -200781821 + AluJo SINE Alu 1 197 -115 268 358 0 0 chr4 1546593 1546660 -200781687 - MIR3 SINE MIR -49 159 93 242 254 185 28 chr4 1546815 1546921 -200781426 - MIR SINE MIR -67 141 14 2454 60 0 0 chr4 1547173 1547474 -200780873 - AluY SINE Alu -10 301 1 2296 77 3 0 chr4 1548289 1548587 -200779760 + AluSq SINE Alu 1 299 -14 1722 162 3 7 chr4 1549685 1549975 -200778372 - AluJb SINE Alu -18 294 6 2235 111 0 0 chr4 1550095 1550402 -200777945 - AluSx SINE Alu -5 307 1 318 301 154 7 chr4 1550492 1550628 -200777719 + MIR SINE MIR 14 169 -93 1997 114 41 0 chr4 1551057 1551347 -200777000 - AluSc SINE Alu -7 302 1 828 187 0 53 chr4 1552215 1552386 -200775961 - FRAM SINE Alu -12 164 3 1213 206 4 47 chr4 1552539 1552815 -200775532 - L1MC4 LINE L1 -1033 7009 6746 2158 110 0 0 chr4 1553080 1553379 -200774968 - AluSg SINE Alu -10 300 2 24 0 0 0 chr4 1553384 1553408 -200774939 + AT_rich Low_complexity Low_complexity 1 24 0 227 147 44 73 chr4 1553459 1553527 -200774820 - L1ME3A LINE L1 -3 6167 6102 1417 115 14 0 chr4 1553675 1553884 -200774463 - AluSg/x SINE Alu -18 294 83 369 207 30 30 chr4 1554147 1554282 -200774065 - L1M4 LINE L1 -3546 2600 2466 2117 125 0 0 chr4 1554747 1555059 -200773288 + AluSx SINE Alu 1 312 0 754 245 129 134 chr4 1555566 1556341 -200772006 - HAL1 LINE L1 -36 2471 1693 6803 111 19 23 chr4 1556341 1557352 -200770995 + LTR13 LTR ERVK 1 1007 0 754 245 129 134 chr4 1557352 1557470 -200770877 - HAL1 LINE L1 -814 1693 1576 1874 153 0 0 chr4 1557470 1557764 -200770583 - AluSx SINE Alu -18 294 1 754 245 129 134 chr4 1557764 1557777 -200770570 - HAL1 LINE L1 -931 1576 1564 1944 124 7 3 chr4 1557777 1558067 -200770280 - AluSx SINE Alu -21 291 1 754 245 129 134 chr4 1558067 1558545 -200769802 - HAL1 LINE L1 -943 1564 1047 2341 81 3 0 chr4 1558545 1558855 -200769492 - AluY SINE Alu 0 311 1 754 245 129 134 chr4 1558855 1559260 -200769087 - HAL1 LINE L1 -1460 1047 641 220 233 29 17 chr4 1559604 1559680 -200768667 - MIR SINE MIR -125 83 6 2023 146 13 0 chr4 1559765 1560083 -200768264 - AluJb SINE Alu 0 322 1 232 265 0 0 chr4 1560714 1560763 -200767584 + (CATATA)n Simple_repeat Simple_repeat 2 50 0 2143 126 0 16 chr4 1560862 1561172 -200767175 - AluSq SINE Alu -2 311 7 1775 166 7 7 chr4 1561221 1561510 -200766837 - AluSx SINE Alu -11 301 13 1877 115 28 90 chr4 1562307 1562630 -200765717 + AluJb SINE Alu 1 303 -9 2226 113 3 13 chr4 1563093 1563394 -200764953 + AluSg SINE Alu 1 298 -12 1834 129 27 0 chr4 1563609 1563865 -200764482 + AluSq SINE Alu 1 263 -50 261 136 0 0 chr4 1563936 1563980 -200764367 + L1 LINE L1 3892 3935 -2211 811 169 0 8 chr4 1564063 1564193 -200764154 + FRAM SINE Alu 34 162 -14 1846 162 14 27 chr4 1564193 1564490 -200763857 + AluJo SINE Alu 1 293 -19 249 266 194 35 chr4 1564501 1564617 -200763730 + L1ME LINE L1 3947 4043 -2103 2232 111 3 3 chr4 1564617 1564915 -200763432 + AluSx SINE Alu 1 298 -14 249 266 194 35 chr4 1564915 1564941 -200763406 + L1ME LINE L1 4043 4064 -2082 2065 160 0 0 chr4 1564941 1565248 -200763099 + AluSx SINE Alu 1 307 -5 249 266 194 35 chr4 1565248 1565308 -200763039 + L1ME LINE L1 4064 4113 -2033 2052 135 7 0 chr4 1565308 1565596 -200762751 + AluSx SINE Alu 1 290 -22 249 266 194 35 chr4 1565596 1565873 -200762474 + L1ME LINE L1 4113 4503 -1643 2183 136 0 0 chr4 1566085 1566380 -200761967 + AluSx SINE Alu 1 295 -17 370 300 25 31 chr4 1566536 1566648 -200761699 + L1ME LINE L1 5047 5159 -987 719 142 63 16 chr4 1566648 1566775 -200761572 + FLAM_C SINE Alu 1 133 0 370 300 25 31 chr4 1566775 1566822 -200761525 + L1ME LINE L1 5159 5205 -941 334 295 50 77 chr4 1566875 1567173 -200761174 + L1ME LINE L1 5371 5660 -502 588 146 0 11 chr4 1567535 1567624 -200760723 + FLAM SINE Alu 44 131 -12 1675 161 9 54 chr4 1568070 1568386 -200759961 + AluJb SINE Alu 1 302 -10 2390 109 0 0 chr4 1568827 1569139 -200759208 - AluSx SINE Alu 0 312 1 1907 158 0 3 chr4 1569215 1569543 -200758804 - AluJo SINE Alu 0 327 1 2438 80 3 0 chr4 1569591 1569891 -200758456 - AluSg SINE Alu -7 303 3 2206 128 0 0 chr4 1569902 1570206 -200758141 - AluSx SINE Alu -3 309 6 2117 195 92 22 chr4 1570315 1570818 -200757529 - MLT1F LTR MaLR -1 541 4 2295 105 7 7 chr4 1570882 1571188 -200757159 + AluSx SINE Alu 7 312 0 1357 204 9 61 chr4 1571315 1571643 -200756704 - AluJo SINE Alu -1 311 1 346 345 35 71 chr4 1571679 1571934 -200756413 - MIR SINE MIR -16 246 1 209 336 114 0 chr4 1572798 1572929 -200755418 - MIR SINE MIR -65 197 52 572 255 40 0 chr4 1572981 1573130 -200755217 - MER58 DNA MER1_type -66 275 121 340 294 110 0 chr4 1573223 1573369 -200754978 + MER5B DNA MER1_type 3 164 -14 354 237 214 8 chr4 1573378 1573509 -200754838 - MER5A DNA MER1_type -9 180 23 21 0 0 0 chr4 1574956 1574977 -200753370 + AT_rich Low_complexity Low_complexity 1 21 0 2340 95 0 7 chr4 1575599 1575903 -200752444 + AluSx SINE Alu 3 304 -8 2296 79 3 26 chr4 1575907 1576211 -200752136 + AluSp SINE Alu 1 297 -16 2324 60 0 30 chr4 1576836 1577138 -200751209 - AluY SINE Alu -18 293 1 2444 100 3 0 chr4 1577520 1577829 -200750518 - AluSp SINE Alu -3 310 1 639 152 0 0 chr4 1577861 1577960 -200750387 + AluSp/q SINE Alu 207 305 -8 24 67 0 0 chr4 1577967 1578012 -200750335 + AT_rich Low_complexity Low_complexity 1 45 0 2564 71 0 3 chr4 1578012 1578318 -200750029 + AluSg SINE Alu 1 306 0 315 0 0 0 chr4 1578318 1578353 -200749994 + (TA)n Simple_repeat Simple_repeat 2 36 0 2319 112 0 3 chr4 1579021 1579325 -200749022 + AluSx SINE Alu 1 303 -9 2464 86 10 0 chr4 1579832 1580133 -200748214 + AluSx SINE Alu 1 304 -8 2317 101 0 7 chr4 1580499 1580797 -200747550 - AluSx SINE Alu -16 296 1 225 328 0 0 chr4 1581041 1581099 -200747248 - MIR SINE MIR -1 261 204 570 148 0 0 chr4 1581784 1581885 -200746462 + (T)n Simple_repeat Simple_repeat 1 101 0 678 279 79 3 chr4 1582666 1582956 -200745391 + L1MC5 LINE L1 7604 7915 -46 203 241 56 19 chr4 1586762 1586816 -200741531 + MIR SINE MIR 172 227 -35 21 0 0 0 chr4 1589375 1589396 -200738951 + AT_rich Low_complexity Low_complexity 1 21 0 2022 112 0 25 chr4 1589693 1590011 -200738336 - AluSg SINE Alu 0 312 2 2393 86 0 10 chr4 1592923 1593225 -200735122 + AluSg SINE Alu 1 299 -11 504 0 0 0 chr4 1594887 1594943 -200733404 + (CA)n Simple_repeat Simple_repeat 1 56 0 1418 110 11 126 chr4 1597212 1597406 -200730941 - AluJb SINE Alu -11 301 143 2223 111 3 7 chr4 1597406 1597703 -200730644 - AluSx SINE Alu -16 296 1 1418 110 11 126 chr4 1597703 1597771 -200730576 - AluJb SINE Alu -169 143 69 1719 160 45 17 chr4 1597786 1598073 -200730274 - AluJb SINE Alu -17 295 1 728 194 194 0 chr4 1598196 1598376 -200729971 + MER20 DNA MER1_type 1 215 -4 2228 109 0 13 chr4 1600693 1601006 -200727341 - AluSx SINE Alu -3 309 1 549 242 52 47 chr4 1602094 1602305 -200726042 - L1ME LINE L1 -414 5707 5496 1707 194 7 0 chr4 1603278 1603577 -200724770 - AluJo SINE Alu -11 301 1 552 290 149 28 chr4 1605645 1606080 -200722267 + L1MC4 LINE L1 7546 8033 -9 1032 166 22 28 chr4 1606088 1606269 -200722078 - AluJo SINE Alu -7 305 126 227 362 108 14 chr4 1606686 1606965 -200721382 + L1MEd LINE L1 653 957 -5573 339 365 53 53 chr4 1606997 1607150 -200721197 + L1MEd LINE L1 945 1097 -5433 1615 160 64 11 chr4 1607150 1607432 -200720915 + AluJo SINE Alu 1 297 -15 339 365 53 53 chr4 1607432 1607634 -200720713 + L1MEd LINE L1 1096 1300 -5230 5209 144 56 53 chr4 1607692 1609029 -200719318 + L1M4c LINE L1 18 1349 -5035 1703 173 52 25 chr4 1609029 1609394 -200718953 - THE1C LTR MaLR 0 375 1 5209 144 56 53 chr4 1609394 1609802 -200718545 + L1M4c LINE L1 1349 1888 -4496 2482 77 0 3 chr4 1609802 1610101 -200718246 + AluY SINE Alu 1 298 -13 5209 144 56 53 chr4 1610101 1610372 -200717975 + L1M4c LINE L1 1888 2157 -4227 1159 232 6 12 chr4 1610391 1610719 -200717628 + L1M4c LINE L1 3415 3740 -2642 2431 88 0 0 chr4 1610725 1611020 -200717327 + AluSg SINE Alu 1 295 -15 296 160 0 20 chr4 1611020 1611070 -200717277 + Tigger5 DNA MER2_type 2261 2309 -14 1087 166 104 104 chr4 1611072 1611427 -200716920 - LOR1a LTR ERV1 0 497 143 338 295 139 45 chr4 1611881 1612125 -200716222 + L1MEd LINE L1 2307 2573 -3967 1611 176 20 33 chr4 1612845 1613151 -200715196 + AluJo SINE Alu 1 302 -10 211 229 0 0 chr4 1613446 1613494 -200714853 + GA-rich Low_complexity Low_complexity 1 48 0 880 85 0 23 chr4 1614503 1614632 -200713715 + FLAM_C SINE Alu 1 126 -7 377 234 181 27 chr4 1615163 1615351 -200712996 + L1M4c LINE L1 4028 4244 -2138 2075 110 31 3 chr4 1616281 1616571 -200711776 - AluSx SINE Alu -14 298 1 2410 81 0 10 chr4 1617642 1617940 -200710407 - AluSq SINE Alu -18 295 1 734 277 142 3 chr4 1619076 1619379 -200708968 - MLT1C LTR MaLR -106 361 17 2320 89 3 49 chr4 1620920 1621247 -200707100 + AluSx SINE Alu 1 312 0 2166 122 0 3 chr4 1621270 1621566 -200706781 + AluSx SINE Alu 1 295 -17 21 0 0 0 chr4 1626555 1626576 -200701771 + AT_rich Low_complexity Low_complexity 1 21 0 203 217 17 0 chr4 1629059 1629119 -200699228 + (CATA)n Simple_repeat Simple_repeat 3 63 0 2373 99 0 0 chr4 1632383 1632685 -200695662 - AluSq SINE Alu -11 302 1 1665 138 94 7 chr4 1632770 1633045 -200695302 - AluJb SINE Alu -13 299 1 1857 164 7 0 chr4 1634245 1634538 -200693809 - AluJo SINE Alu -17 295 1 251 282 9 73 chr4 1634597 1634707 -200693640 - L2 LINE L2 -9 3304 3202 2207 108 13 0 chr4 1636743 1637050 -200691297 + AluSp SINE Alu 3 313 0 586 154 27 31 chr4 1637073 1637205 -200691142 - MLT1A1 LTR MaLR -38 429 197 1029 102 12 30 chr4 1637239 1637406 -200690941 - AluSg/x SINE Alu -12 300 137 1007 161 0 12 chr4 1637561 1637723 -200690624 + FRAM SINE Alu 1 160 -16 2146 127 7 0 chr4 1637725 1638017 -200690330 + AluSx SINE Alu 1 294 -18 2448 79 20 0 chr4 1638017 1638321 -200690026 + AluY SINE Alu 1 311 0 1030 223 122 62 chr4 1638396 1638781 -200689566 + MLT2B1 LTR ERVL 7 414 0 501 278 57 20 chr4 1639077 1639322 -200689025 + L1ME3A LINE L1 2315 2568 -3578 402 172 247 21 chr4 1639348 1639441 -200688906 + FLAM_A SINE Alu 14 127 -6 724 283 141 21 chr4 1639441 1640059 -200688288 + L1ME3A LINE L1 2592 3283 -2863 1796 162 0 33 chr4 1640105 1640408 -200687939 + AluSx SINE Alu 13 305 -7 840 220 18 6 chr4 1640409 1640577 -200687770 + AluJo/FRAM SINE Alu 135 304 -8 684 296 52 17 chr4 1640590 1640935 -200687412 + L1ME3A LINE L1 3484 3840 -2306 719 179 64 0 chr4 1641010 1641166 -200687181 + L1MB8 LINE L1 5450 5615 -559 * 24912 132 25 20 chr4 1641158 1641526 -200686821 + L1PA8A LINE L1 862 1227 -5219 267 114 0 0 chr4 1641526 1641570 -200686777 + (CAA)n Simple_repeat Simple_repeat 2 45 0 24912 132 25 20 chr4 1641570 1643885 -200684462 + L1PA8A LINE L1 1227 3529 -2917 186 43 0 0 chr4 1643885 1643908 -200684439 + (TAA)n Simple_repeat Simple_repeat 2 24 0 24912 132 25 20 chr4 1643908 1645068 -200683279 + L1PA8A LINE L1 3529 4682 -1764 2479 77 0 0 chr4 1645068 1645367 -200682980 + AluSx SINE Alu 1 299 -13 2615 68 0 0 chr4 1645367 1645676 -200682671 + AluY SINE Alu 1 309 -2 24912 132 25 20 chr4 1645676 1647318 -200681029 + L1PA8A LINE L1 4682 6440 -6 2352 95 0 25 chr4 1647318 1647635 -200680712 + AluSc SINE Alu 1 309 0 1235 204 49 3 chr4 1647639 1647924 -200680423 + L1MB8 LINE L1 5860 6157 -21 * 1999 167 0 0 chr4 1647942 1648235 -200680112 - AluJb SINE Alu -19 293 1 2346 74 7 10 chr4 1648257 1648555 -200679792 - AluY SINE Alu -14 297 1 482 294 184 57 chr4 1648611 1648911 -200679436 + L1ME3A LINE L1 3975 4235 -1911 1773 113 0 4 chr4 1648911 1649176 -200679171 + AluSx SINE Alu 56 312 0 482 294 184 57 chr4 1649176 1649934 -200678413 + L1ME3A LINE L1 4235 5216 -930 1658 178 14 10 chr4 1649934 1650226 -200678121 + AluJo SINE Alu 1 293 -19 482 294 184 57 chr4 1650226 1650406 -200677941 + L1ME3A LINE L1 5216 5372 -774 665 168 0 0 chr4 1650408 1650515 -200677832 + AluSq/x SINE Alu 2 108 -205 883 167 20 0 chr4 1650515 1650665 -200677682 + AluJb SINE Alu 157 309 -3 256 268 138 65 chr4 1650684 1650975 -200677372 + L1ME3A LINE L1 5609 5920 -250 218 318 6 47 chr4 1651932 1652102 -200676245 + G-rich Low_complexity Low_complexity 5 167 0 233 267 151 0 chr4 1653123 1653209 -200675138 - MER63D DNA MER1_type -9 1053 955 565 171 23 31 chr4 1653234 1653363 -200674984 - FLAM_C SINE Alu -4 129 2 1005 228 53 42 chr4 1653507 1653814 -200674533 - MER63D DNA MER1_type -313 748 435 2382 60 3 17 chr4 1653814 1654116 -200674231 + AluSp SINE Alu 1 298 -15 1005 228 53 42 chr4 1654116 1654185 -200674162 - MER63D DNA MER1_type -626 435 368 482 178 22 0 chr4 1654243 1654333 -200674014 + L1MC/D LINE L1 5656 5747 -495 375 258 54 41 chr4 1654513 1654602 -200673745 + L1ME LINE L1 5258 5344 -826 1495 125 5 0 chr4 1654602 1654818 -200673529 + AluSg/x SINE Alu 84 300 -10 375 258 54 41 chr4 1654818 1654949 -200673398 + L1ME LINE L1 5344 5481 -689 1154 184 95 45 chr4 1655017 1655177 -200673170 - L1M4 LINE L1 -1318 4828 4678 2059 154 7 0 chr4 1655177 1655482 -200672865 - AluSx SINE Alu -5 307 1 1154 184 95 45 chr4 1655482 1655658 -200672689 - L1M4 LINE L1 -1468 4678 4475 1309 133 30 10 chr4 1655662 1655865 -200672482 + AluJo SINE Alu 14 220 -92 251 204 0 0 chr4 1655865 1655914 -200672433 + FLAM_A SINE Alu 85 133 0 880 249 58 19 chr4 1655922 1656231 -200672116 - L1M4 LINE L1 -1659 4487 4167 2325 90 0 3 chr4 1656260 1656548 -200671799 + AluSq SINE Alu 1 287 -26 1644 82 0 0 chr4 1656548 1656744 -200671603 + AluSq SINE Alu 79 274 -39 317 194 39 29 chr4 1656773 1656876 -200671471 - L1M4 LINE L1 -1494 4652 4549 1152 154 0 0 chr4 1656959 1657121 -200671226 - AluJb SINE Alu -17 295 134 1466 161 93 7 chr4 1657121 1657254 -200671093 - AluSx SINE Alu -8 304 184 1590 114 18 0 chr4 1657254 1657473 -200670874 - AluSx SINE Alu -89 223 1 1466 161 93 7 chr4 1657473 1657619 -200670728 - AluSx SINE Alu -128 184 1 1208 181 185 8 chr4 1657621 1657880 -200670467 - AluJo SINE Alu -7 305 1 535 366 103 6 chr4 1657899 1658238 -200670109 - L1M4 LINE L1 -1712 4434 4063 549 135 0 11 chr4 1658249 1658338 -200670009 - FLAM_A SINE Alu -16 126 39 262 325 32 37 chr4 1658405 1658651 -200669696 - L1M4 LINE L1 -2125 4021 3777 1276 204 78 20 chr4 1658651 1658999 -200669348 - MER96B DNA MER1_type? 0 417 50 317 221 70 12 chr4 1659032 1659118 -200669229 + MER96B DNA MER1_type? 327 417 0 330 314 26 39 chr4 1659124 1659239 -200669108 - L1M4 LINE L1 -2387 3759 3645 2381 76 0 13 chr4 1659239 1659540 -200668807 - AluY SINE Alu -14 297 1 330 314 26 39 chr4 1659540 1659580 -200668767 - L1M4 LINE L1 -2501 3645 3606 431 281 38 111 chr4 1659738 1659939 -200668408 - L1ME LINE L1 -5708 362 187 2206 125 0 0 chr4 1659939 1660228 -200668119 + AluSx SINE Alu 9 297 -15 431 281 38 111 chr4 1660228 1660314 -200668033 - L1ME LINE L1 -5883 187 96 774 236 38 64 chr4 1660366 1660381 -200667966 - L1M4 LINE L1 -2103 4043 4029 2399 84 0 3 chr4 1660381 1660690 -200667657 - AluY SINE Alu -3 308 1 774 236 38 64 chr4 1660690 1661017 -200667330 - L1M4 LINE L1 -2117 4029 3710 2360 106 0 6 chr4 1661197 1661508 -200666839 + AluSc SINE Alu 1 309 0 335 274 138 68 chr4 1661651 1661903 -200666444 + MER110 LTR ERV1 97 359 -109 1789 145 0 0 chr4 1661911 1662173 -200666174 + AluJo SINE Alu 34 295 -17 2785 29 0 3 chr4 1662837 1663149 -200665198 + AluY SINE Alu 1 311 0 583 229 8 0 chr4 1663286 1663417 -200664930 - FLAM_A SINE Alu -1 132 1 693 187 29 0 chr4 1663600 1663771 -200664576 + CT-rich Low_complexity Low_complexity 4 179 0 2363 84 17 0 chr4 1663807 1664149 -200664198 - AluY SINE Alu 0 347 1 2090 122 3 0 chr4 1664317 1664604 -200663743 - AluSx SINE Alu -14 298 11 346 161 18 0 chr4 1664621 1664677 -200663670 - L1MB7 LINE L1 0 6184 6128 1719 190 16 44 chr4 1664677 1664755 -200663592 + L1 LINE L1 4124 4203 -1943 4144 183 31 55 chr4 1664755 1665748 -200662599 + LTR5 LTR ERVK 1 969 0 1719 190 16 44 chr4 1665748 1665874 -200662473 + L1 LINE L1 4203 4331 -1815 2039 95 95 0 chr4 1665874 1666147 -200662200 - AluSc SINE Alu -10 299 1 1719 190 16 44 chr4 1666147 1666393 -200661954 + L1 LINE L1 4331 4562 -1584 305 211 0 0 chr4 1666394 1666451 -200661896 + AluS SINE Alu 1 57 -243 1799 204 19 12 chr4 1666451 1666873 -200661474 + L1P LINE L1 4852 5276 -870 10241 125 8 30 chr4 1666873 1668521 -200659826 - PRIMA41-int LTR ERV1 -179 6497 4886 1557 165 4 0 chr4 1668521 1668770 -200659577 + MER52A LTR ERV1 1506 1755 0 6887 135 26 16 chr4 1668781 1669919 -200658428 - THE1-int LTR MaLR 0 1580 431 13571 122 12 10 chr4 1669919 1672578 -200655769 - L1PA10 LINE L1 0 6483 3809 2320 100 0 0 chr4 1672578 1672868 -200655479 - AluSq SINE Alu -23 290 1 13571 122 12 10 chr4 1672868 1673270 -200655077 - L1PA10 LINE L1 -2674 3809 3410 1203 112 0 0 chr4 1673272 1673451 -200654896 + L1P LINE L1 4411 4589 -1557 * 10885 184 10 44 chr4 1673448 1674078 -200654269 - L1PA10 LINE L1 -3051 3410 2760 2324 89 0 4 chr4 1674078 1674402 -200653945 + AluSc SINE Alu 2 324 0 10885 184 10 44 chr4 1674402 1675045 -200653302 - L1PA10 LINE L1 -3701 2760 2097 2262 106 0 20 chr4 1675045 1675348 -200652999 - AluSg SINE Alu -13 297 1 10885 184 10 44 chr4 1675348 1675376 -200652971 - L1PA10 LINE L1 -4364 2097 2070 1407 103 198 12 chr4 1675376 1675628 -200652719 + AluSc SINE Alu 1 299 0 10885 184 10 44 chr4 1675628 1676546 -200651801 - L1PA10 LINE L1 -4391 2070 1303 2424 77 10 19 chr4 1676546 1676859 -200651488 - AluSg SINE Alu 0 310 1 10885 184 10 44 chr4 1676859 1677453 -200650894 - L1PA10 LINE L1 -5158 1303 690 1473 151 0 18 chr4 1677482 1677700 -200650647 - AluSg SINE Alu -96 214 1 2299 316 45 73 chr4 1677814 1678758 -200649589 - PRIMA41-int LTR ERV1 -2753 5003 4125 2684 55 0 0 chr4 1678758 1679067 -200649280 - AluY SINE Alu -2 309 1 2299 316 45 73 chr4 1679067 1679778 -200648569 - PRIMA41-int LTR ERV1 -3631 4125 3395 448 335 50 19 chr4 1679931 1680250 -200648097 + ERVL LTR ERVL 3656 3984 -1780 1585 138 161 15 chr4 1680343 1680684 -200647663 + MSTA LTR MaLR 1 391 -37 652 164 9 0 chr4 1680685 1680801 -200647546 - FLAM_C SINE Alu -16 117 1 334 222 56 32 chr4 1680801 1680927 -200647420 + L1M4 LINE L1 2869 2997 -3149 709 183 89 0 chr4 1680980 1681193 -200647154 + LOR1-int LTR ERV1 2275 2506 -2365 257 294 61 66 chr4 1681352 1681645 -200646702 - L1M4 LINE L1 -3136 3010 2717 396 0 0 0 chr4 1681645 1681689 -200646658 + (TA)n Simple_repeat Simple_repeat 1 44 0 1591 170 71 32 chr4 1681698 1681980 -200646367 - AluJo SINE Alu -19 293 1 257 294 61 66 chr4 1681980 1682234 -200646113 - L1M4 LINE L1 -3437 2709 2456 712 194 55 103 chr4 1682509 1682535 -200645812 + LOR1-int LTR ERV1 1522 1548 -6572 2329 120 0 0 chr4 1682535 1682843 -200645504 + AluSx SINE Alu 1 308 -4 712 194 55 103 chr4 1682843 1682956 -200645391 + LOR1-int LTR ERV1 1548 1665 -6455 2095 116 3 20 chr4 1682956 1683250 -200645097 + AluSx SINE Alu 1 289 -23 712 194 55 103 chr4 1683250 1683507 -200644840 + LOR1-int LTR ERV1 1665 1900 -6220 2194 80 0 0 chr4 1683522 1683785 -200644562 - AluSx SINE Alu -24 288 26 30 0 0 0 chr4 1685679 1685709 -200642638 + GC_rich Low_complexity Low_complexity 1 30 0 216 97 0 0 chr4 1685791 1685822 -200642525 + (CTG)n Simple_repeat Simple_repeat 1 31 0 24 32 0 0 chr4 1685836 1685867 -200642480 + GC_rich Low_complexity Low_complexity 1 31 0 252 231 77 0 chr4 1688360 1688438 -200639909 - MLT1J LTR MaLR -336 175 92 231 238 125 0 chr4 1688487 1688567 -200639780 - MER53 DNA DNA -75 114 25 191 281 47 0 chr4 1688852 1688916 -200639431 - L2 LINE L2 -741 2573 2507 816 172 0 0 chr4 1689749 1689883 -200638464 - AluJb SINE Alu -21 291 158 273 247 34 22 chr4 1690401 1690490 -200637857 + (CCCCG)n Simple_repeat Simple_repeat 1 90 0 224 150 0 0 chr4 1690944 1690984 -200637363 + MIR SINE MIR 105 144 -118 448 222 0 10 chr4 1691952 1692051 -200636296 + LTR23 LTR ERV1 340 437 0 1984 158 0 0 chr4 1692452 1692784 -200635563 + AluSx SINE Alu 1 332 0 1719 162 43 23 chr4 1693221 1693524 -200634823 - AluJb SINE Alu -3 309 1 561 124 21 31 chr4 1693759 1693856 -200634491 + LTR23-int LTR ERV1 1557 1652 -4679 1246 148 9 43 chr4 1693856 1694066 -200634281 + AluJo SINE Alu 86 288 -24 369 0 0 0 chr4 1694079 1694120 -200634227 + (CA)n Simple_repeat Simple_repeat 2 42 0 552 183 0 26 chr4 1694141 1694256 -200634091 - FLAM_C SINE Alu 0 143 32 3950 196 35 40 chr4 1694260 1695178 -200633169 + LTR23-int LTR ERV1 1675 2587 -3744 433 235 170 46 chr4 1695218 1695371 -200632976 + MER34C LTR ERV1 160 331 -254 2501 55 3 0 chr4 1695371 1695662 -200632685 + AluSp SINE Alu 1 292 -21 1377 143 40 48 chr4 1695698 1695949 -200632398 - AluJo SINE Alu -4 308 60 529 205 0 46 chr4 1695955 1696154 -200632193 + LTR23-int LTR ERV1 1098 1180 -3691 * 1320 243 35 62 chr4 1696142 1696645 -200631702 + LTR23-int LTR ERV1 1296 1784 -3339 2547 84 3 0 chr4 1696645 1696955 -200631392 + AluSp SINE Alu 1 311 -2 1320 243 35 62 chr4 1696955 1697015 -200631332 + LTR23-int LTR ERV1 1784 1844 -3279 2562 70 0 0 chr4 1697024 1697325 -200631022 - AluY SINE Alu -9 302 2 818 184 0 0 chr4 1697329 1697454 -200630893 - FRAM SINE Alu -16 160 36 280 75 43 129 chr4 1697470 1697548 -200630799 + LTR23-int LTR ERV1 1836 1906 -3217 1752 131 141 21 chr4 1697548 1697930 -200630417 - MSTA LTR MaLR 0 428 1 280 75 43 129 chr4 1697930 1697944 -200630403 + LTR23-int LTR ERV1 1906 1920 -3203 2584 69 0 0 chr4 1697945 1698251 -200630096 - AluSc SINE Alu -3 306 1 667 194 37 118 chr4 1698342 1698428 -200629919 + LTR23-int LTR ERV1 1925 2016 -3651 2404 76 17 3 chr4 1698428 1698730 -200629617 + AluY SINE Alu 1 306 -5 667 194 37 118 chr4 1698730 1698826 -200629521 + LTR23-int LTR ERV1 2016 2118 -3549 1692 156 0 4 chr4 1698826 1699082 -200629265 + AluJb SINE Alu 34 288 -24 667 194 37 118 chr4 1699082 1699301 -200629046 + LTR23-int LTR ERV1 2118 3710 -1957 2418 84 7 0 chr4 1699352 1699651 -200628696 + AluSp SINE Alu 1 301 -12 831 130 0 36 chr4 1699660 1699798 -200628549 + FLAM_C SINE Alu 1 133 0 2338 101 7 0 chr4 1700464 1700770 -200627577 - AluSx SINE Alu -4 308 1 1397 161 103 58 chr4 1701090 1701506 -200626841 + LTR23 LTR ERV1 1 435 -2 32 0 0 0 chr4 1702012 1702044 -200626303 + GC_rich Low_complexity Low_complexity 1 32 0 21 57 0 0 chr4 1702171 1702206 -200626141 + GC_rich Low_complexity Low_complexity 1 35 0 402 274 0 0 chr4 1702518 1702613 -200625734 + T-rich Low_complexity Low_complexity 1 95 0 21 0 0 0 chr4 1703475 1703496 -200624851 + AT_rich Low_complexity Low_complexity 1 21 0 407 251 9 68 chr4 1705778 1705997 -200622350 + AluYa5 SINE Alu 98 303 -8 61 68 0 0 chr4 1708953 1709070 -200619277 + GC_rich Low_complexity Low_complexity 1 117 0 21 110 0 0 chr4 1709220 1709311 -200619036 + GC_rich Low_complexity Low_complexity 1 91 0 265 234 4 32 chr4 1709735 1709815 -200618532 - MIR SINE MIR -61 147 69 213 182 0 0 chr4 1709941 1709974 -200618373 + C-rich Low_complexity Low_complexity 1 33 0 182 276 52 17 chr4 1711585 1711643 -200616704 - MIR SINE MIR -67 141 82 183 269 104 0 chr4 1711992 1712059 -200616288 - L2 LINE L2 -52 3261 3188 237 98 16 49 chr4 1713457 1713518 -200614829 + (CCCG)n Simple_repeat Simple_repeat 1 59 0 204 182 0 0 chr4 1717421 1717465 -200610882 + (TG)n Simple_repeat Simple_repeat 1 44 0 386 385 0 22 chr4 1717489 1717671 -200610676 + (CGTG)n Simple_repeat Simple_repeat 2 179 0 * 517 344 6 6 chr4 1717567 1717747 -200610600 + (TG)n Simple_repeat Simple_repeat 1 180 0 414 320 11 17 chr4 1717821 1718002 -200610345 + (TG)n Simple_repeat Simple_repeat 1 180 0 269 333 11 0 chr4 1720486 1720576 -200607771 + MIR SINE MIR 105 195 -67 202 320 13 0 chr4 1721713 1721791 -200606556 + (CA)n Simple_repeat Simple_repeat 1 79 0 534 173 39 47 chr4 1727783 1727910 -200600437 - AluSg/x SINE Alu -2 310 185 1739 131 34 37 chr4 1728254 1728551 -200599796 - AluJb SINE Alu -16 296 1 206 278 10 0 chr4 1728757 1728854 -200599493 + (TG)n Simple_repeat Simple_repeat 2 99 0 2187 104 7 0 chr4 1728907 1729205 -200599142 - AluSx SINE Alu -12 300 1 2074 121 3 3 chr4 1731563 1731870 -200596477 - AluSx SINE Alu -5 307 1 328 169 28 0 chr4 1732072 1732143 -200596204 - MER69 DNA AcHobo -3 2523 2451 * 414 248 88 9 chr4 1732142 1732255 -200596092 - MER69 DNA AcHobo -1854 672 551 1129 330 67 16 chr4 1732383 1733147 -200595200 - L1MEc LINE L1 -5557 839 37 853 297 147 5 chr4 1733147 1733568 -200594779 - MER69 DNA AcHobo -1982 544 64 200 321 47 28 chr4 1734017 1734123 -200594224 + L2 LINE L2 3120 3227 -86 865 310 81 52 chr4 1734468 1734948 -200593399 - L1ME LINE L1 -2976 3668 3175 184 274 274 0 chr4 1735542 1735644 -200592703 - L2 LINE L2 0 3272 3143 755 160 0 76 chr4 1735806 1735950 -200592397 + FLAM_C SINE Alu 1 133 0 290 300 75 59 chr4 1735965 1736207 -200592140 + MIR SINE MIR 8 256 -6 1083 215 63 11 chr4 1737086 1737449 -200590898 - L1ME LINE L1 -5133 1501 1120 909 175 38 6 chr4 1737450 1737610 -200590737 - AluJo SINE Alu -14 298 134 1584 261 44 25 chr4 1740324 1740849 -200587498 - L1ME LINE L1 -5525 1109 575 324 0 0 0 chr4 1741377 1741413 -200586934 + (TG)n Simple_repeat Simple_repeat 1 36 0 299 295 48 0 chr4 1743057 1743162 -200585185 - MIR SINE MIR -120 142 33 775 212 126 15 chr4 1743614 1743682 -200584665 + MLT1E LTR MaLR 253 312 -281 2095 104 12 61 chr4 1743682 1744010 -200584337 + AluSx SINE Alu 1 312 0 775 212 126 15 chr4 1744010 1744212 -200584135 + MLT1E LTR MaLR 312 592 -1 241 287 96 0 chr4 1744213 1744349 -200583998 - L2 LINE L2 -255 3058 2910 230 318 0 0 chr4 1744822 1744885 -200583462 + GA-rich Low_complexity Low_complexity 5 67 0 441 110 0 0 chr4 1746308 1746381 -200581966 + (GA)n Simple_repeat Simple_repeat 1 73 0 1270 284 88 49 chr4 1746419 1746982 -200581365 - L1M4 LINE L1 -5758 784 244 2191 99 3 0 chr4 1746982 1747274 -200581073 - AluSg SINE Alu -17 293 1 1270 284 88 49 chr4 1747274 1747298 -200581049 - L1M4 LINE L1 -6298 244 222 713 172 8 45 chr4 1747298 1747432 -200580915 - AluJo SINE Alu -169 133 5 1270 284 88 49 chr4 1747432 1747594 -200580753 - L1M4 LINE L1 -6320 222 5 1837 143 3 21 chr4 1747758 1748044 -200580303 + AluJb SINE Alu 1 281 -31 22 0 0 0 chr4 1748079 1748101 -200580246 + AT_rich Low_complexity Low_complexity 1 22 0 5924 182 20 18 chr4 1748160 1748545 -200579802 + L1MC3 LINE L1 6488 6871 -914 225 0 0 0 chr4 1748545 1748570 -200579777 + (CA)n Simple_repeat Simple_repeat 1 25 0 5924 182 20 18 chr4 1748570 1749478 -200578869 + L1MC3 LINE L1 6871 7784 -1 1584 126 4 8 chr4 1749485 1749723 -200578624 + AluJb SINE Alu 76 312 0 664 363 134 25 chr4 1749895 1750589 -200577758 + L1M4 LINE L1 4258 5027 -1119 355 406 19 14 chr4 1750672 1750884 -200577463 + L1M4 LINE L1 4917 5129 -1017 9382 223 25 61 chr4 1750894 1753857 -200574490 + L1M2 LINE L1 10 2867 -3982 1484 153 43 0 chr4 1753859 1754141 -200574206 - L1M4 LINE L1 -368 5816 5523 310 323 264 0 chr4 1754637 1754990 -200573357 + L2 LINE L2 2239 2684 -630 353 232 143 0 chr4 1755035 1755147 -200573200 + HAL1 LINE L1 5 132 -2375 474 18 0 0 chr4 1755428 1755483 -200572864 + (ATG)n Simple_repeat Simple_repeat 2 56 0 264 322 0 33 chr4 1755503 1755593 -200572754 + L2 LINE L2 1868 1954 -1360 829 316 58 69 chr4 1756279 1756886 -200571461 - L1M4 LINE L1 -1254 5687 5088 212 320 190 28 chr4 1757090 1757343 -200571004 - L2 LINE L2 -562 2752 2459 180 353 47 0 chr4 1757382 1757467 -200570880 - L2 LINE L2 -967 2347 2259 191 281 90 42 chr4 1757599 1757766 -200570581 + L2 LINE L2 2909 3083 -189 411 290 104 35 chr4 1757848 1758079 -200570268 + MIR SINE MIR 16 262 0 2527 256 75 60 chr4 1759123 1759622 -200568725 - L1MCc LINE L1 -3614 3327 2837 22581 24 0 0 chr4 1759622 1763017 -200565330 + L1PA4 LINE L1 2746 6147 -8 2527 256 75 60 chr4 1763017 1763201 -200565146 - L1MCc LINE L1 -4104 2837 2657 2072 131 3 0 chr4 1763201 1763523 -200564824 + AluSx SINE Alu 1 323 0 1848 172 3 0 chr4 1763526 1763817 -200564530 - AluJb SINE Alu -20 292 1 2527 256 75 60 chr4 1763817 1764668 -200563679 - L1MCc LINE L1 -4285 2656 1581 1970 130 3 10 chr4 1764668 1764827 -200563520 - AluSx SINE Alu -14 298 140 189 0 0 0 chr4 1764827 1764848 -200563499 + (TA)n Simple_repeat Simple_repeat 1 21 0 1970 130 3 10 chr4 1764848 1764988 -200563359 - AluSx SINE Alu -172 140 1 2527 256 75 60 chr4 1764988 1765449 -200562898 - L1MCc LINE L1 -5360 1581 1129 674 283 106 30 chr4 1765748 1766144 -200562203 - L1MCc LINE L1 -5975 448 23 1056 278 50 9 chr4 1766637 1766954 -200561393 - MLT1I LTR MaLR -53 356 27 832 298 106 6 chr4 1768345 1768657 -200559690 - MLT1I LTR MaLR -7 402 60 331 221 0 0 chr4 1768706 1768774 -200559573 - L1M4 LINE L1 -1886 4260 4193 213 175 0 0 chr4 1769020 1769060 -200559287 + (TG)n Simple_repeat Simple_repeat 1 40 0 2547 223 73 44 chr4 1769659 1770122 -200558225 - L1M4 LINE L1 -1276 4870 4371 2307 105 0 3 chr4 1770122 1770417 -200557930 - AluSx SINE Alu -18 294 1 2547 223 73 44 chr4 1770417 1770775 -200557572 - L1M4 LINE L1 -1775 4371 4025 2267 112 0 0 chr4 1770775 1771070 -200557277 + AluSx SINE Alu 1 295 -17 180 0 0 0 chr4 1771070 1771090 -200557257 + (TA)n Simple_repeat Simple_repeat 2 21 0 1791 215 68 10 chr4 1771091 1771608 -200556739 - L1M4 LINE L1 -2605 3541 2995 2331 206 44 125 chr4 1772092 1772327 -200556020 + L1ME1 LINE L1 5372 5624 -542 433 133 13 0 chr4 1772327 1772398 -200555949 + L1MB2 LINE L1 6096 6171 0 2331 206 44 125 chr4 1772398 1772494 -200555853 + L1ME1 LINE L1 5624 5726 -440 1479 174 0 50 chr4 1772494 1772792 -200555555 + AluJo SINE Alu 1 283 -29 315 0 0 0 chr4 1772793 1772828 -200555519 + (CAAAC)n Simple_repeat Simple_repeat 2 36 0 1781 167 3 30 chr4 1772830 1772967 -200555380 + AluSx SINE Alu 1 140 -172 2295 113 6 3 chr4 1772967 1773278 -200555069 + AluSx SINE Alu 1 312 0 1781 167 3 30 chr4 1773278 1773439 -200554908 + AluSx SINE Alu 140 291 -21 2331 206 44 125 chr4 1773439 1773905 -200554442 + L1ME1 LINE L1 5727 6104 -62 1549 147 33 50 chr4 1773905 1774204 -200554143 - AluJo SINE Alu -18 294 1 2331 206 44 125 chr4 1774204 1774255 -200554092 + L1ME1 LINE L1 6104 6158 -8 378 204 58 0 chr4 1774777 1774880 -200553467 + MER91C DNA MER1_type 2 110 -30 301 135 0 104 chr4 1776177 1776273 -200552074 + (GGAGA)n Simple_repeat Simple_repeat 2 87 0 2274 114 0 7 chr4 1778399 1778706 -200549641 + AluSx SINE Alu 1 305 -7 28 22 0 22 chr4 1779006 1779028 -200549319 + AT_rich Low_complexity Low_complexity 1 22 -23 1879 163 0 7 chr4 1779028 1779317 -200549030 - AluJo SINE Alu -25 287 1 28 22 0 22 chr4 1779317 1779340 -200549007 + AT_rich Low_complexity Low_complexity 22 45 0 1977 119 32 3 chr4 1779599 1779884 -200548463 + AluSx SINE Alu 1 293 -19 456 104 0 0 chr4 1779889 1779956 -200548391 + (GGGGA)n Simple_repeat Simple_repeat 4 70 0 1830 159 0 28 chr4 1780526 1780816 -200547531 + AluJb SINE Alu 5 286 -26 1887 266 68 27 chr4 1781814 1782567 -200545780 + L1ME LINE L1 874 1644 -4436 633 149 57 71 chr4 1782652 1782793 -200545554 + FLAM_C SINE Alu 2 140 -3 2663 144 7 2 chr4 1782793 1783217 -200545130 + L1MA5 LINE L1 5490 5915 -385 * 5026 168 33 47 chr4 1783213 1784226 -200544121 - L1MC3 LINE L1 -1362 6423 5426 191 298 97 0 chr4 1786658 1786772 -200541575 + L2 LINE L2 3146 3270 -2 407 290 61 0 chr4 1786785 1786916 -200541431 - MIR SINE MIR -76 186 48 2132 119 0 0 chr4 1787489 1787766 -200540581 - AluSg SINE Alu -33 277 1 231 143 71 0 chr4 1787808 1787850 -200540497 + L2 LINE L2 3226 3270 -2 185 303 49 57 chr4 1787858 1787980 -200540367 - L2 LINE L2 -457 2857 2737 1922 128 33 4 chr4 1788248 1788551 -200539796 + AluSx SINE Alu 1 311 0 309 230 81 0 chr4 1789034 1789108 -200539239 - MER112 DNA MER1_type -58 202 123 2059 114 4 4 chr4 1789695 1790005 -200538342 - AluSg SINE Alu 0 310 1 2003 161 0 3 chr4 1790093 1790391 -200537956 + AluSx SINE Alu 1 297 -15 296 310 9 17 chr4 1790744 1790860 -200537487 + MLT1K LTR MaLR 458 572 -16 1514 170 135 50 chr4 1792062 1792291 -200536056 + L1ME3A LINE L1 15 290 -6250 217 47 47 23 chr4 1792291 1792334 -200536013 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1514 170 135 50 chr4 1792334 1792481 -200535866 + L1ME3A LINE L1 290 423 -6117 545 220 8 8 chr4 1792501 1792619 -200535728 + MER31B LTR ERV1 273 390 -76 281 230 68 0 chr4 1792591 1792665 -200535682 + MER67D LTR ERV1 432 510 -4 * 2204 256 90 4 chr4 1792669 1793434 -200534913 + L1ME3A LINE L1 3342 4172 -2368 699 176 29 0 chr4 1793437 1793573 -200534774 + L1MC/D LINE L1 5616 5755 -487 24 53 0 0 chr4 1793647 1793685 -200534662 + AT_rich Low_complexity Low_complexity 1 38 0 2304 118 0 0 chr4 1793760 1794066 -200534281 - AluSg SINE Alu -4 306 1 27 0 0 0 chr4 1794187 1794214 -200534133 + AT_rich Low_complexity Low_complexity 1 27 0 1028 272 98 55 chr4 1794563 1795673 -200532674 + L1ME3A LINE L1 5176 6341 -223 33 25 0 0 chr4 1795697 1795737 -200532610 + AT_rich Low_complexity Low_complexity 1 40 0 2228 95 14 3 chr4 1795848 1796144 -200532203 + AluSq SINE Alu 1 299 -14 2443 98 0 0 chr4 1797256 1797561 -200530786 - AluSp SINE Alu -8 305 1 385 336 38 0 chr4 1797567 1797698 -200530649 - L2 LINE L2 -5 3267 3132 1016 231 92 129 chr4 1797803 1798005 -200530342 + L1ME1 LINE L1 1437 1645 -5076 2270 88 3 20 chr4 1798005 1798300 -200530047 + AluSg SINE Alu 1 290 -20 1016 231 92 129 chr4 1798300 1798651 -200529696 + L1ME1 LINE L1 1645 1957 -4764 1844 142 0 21 chr4 1798651 1798964 -200529383 + AluJb SINE Alu 24 312 0 1016 231 92 129 chr4 1798964 1799163 -200529184 + L1ME1 LINE L1 1957 2162 -4559 286 119 24 0 chr4 1799168 1799210 -200529137 - FLAM_A SINE Alu -32 101 59 1083 194 5 23 chr4 1799215 1799414 -200528933 + AluJo SINE Alu 99 295 -17 2409 90 0 3 chr4 1799414 1799725 -200528622 + AluSg SINE Alu 1 310 0 1083 194 5 23 chr4 1799725 1799742 -200528605 + AluJo SINE Alu 295 311 -1 343 152 133 48 chr4 1799752 1799857 -200528490 + L1ME1 LINE L1 2629 2742 -3798 301 276 0 0 chr4 1799924 1800011 -200528336 + L1ME1 LINE L1 2728 2814 -3726 * 2824 249 35 32 chr4 1799998 1801481 -200526866 + L1ME1 LINE L1 4942 6425 -135 1856 177 3 19 chr4 1801633 1801950 -200526397 - AluSx SINE Alu 0 312 1 1162 132 93 39 chr4 1801953 1802157 -200526190 - AluJo SINE Alu -11 301 87 282 302 52 85 chr4 1802454 1802702 -200525645 + L1MC/D LINE L1 5507 5746 -2062 310 250 49 32 chr4 1803035 1803200 -200525147 + HAL1b LINE L1 1191 1340 -8 2254 92 3 7 chr4 1803200 1803495 -200524852 - AluY SINE Alu -17 294 1 2565 58 7 3 chr4 1803527 1803835 -200524512 + AluY SINE Alu 1 309 -2 544 237 189 29 chr4 1803872 1804318 -200524029 + L1ME LINE L1 5191 5721 -400 293 173 214 0 chr4 1804354 1804464 -200523883 + L1MC/D LINE L1 5687 5819 -401 25 31 0 0 chr4 1805324 1805356 -200522991 + AT_rich Low_complexity Low_complexity 1 32 0 2223 84 14 0 chr4 1805456 1805743 -200522604 - AluY SINE Alu -20 291 1 248 219 115 31 chr4 1806795 1806891 -200521456 + MIR SINE MIR 63 166 -96 2226 102 10 3 chr4 1807052 1807356 -200520991 + AluSg SINE Alu 1 306 -4 358 125 0 47 chr4 1807562 1807626 -200520721 - AluS SINE Alu -9 291 231 2143 116 0 10 chr4 1807564 1807858 -200520489 - AluSx SINE Alu -21 291 1 234 147 162 59 chr4 1807952 1808020 -200520327 - MER113 DNA MER1_type? -46 475 401 272 220 55 11 chr4 1808020 1808111 -200520236 - L1MC3 LINE L1 -7 7778 7684 1342 289 94 15 chr4 1809195 1810008 -200518339 - L1ME3A LINE L1 -17 6153 5179 1811 156 3 26 chr4 1810008 1810316 -200518031 - AluJo SINE Alu -11 301 1 1342 289 94 15 chr4 1810316 1810559 -200517788 - L1ME3A LINE L1 -991 5179 4957 328 138 79 0 chr4 1810641 1810704 -200517643 - AluJb SINE Alu -7 295 238 4429 116 114 129 chr4 1810709 1812120 -200516227 + pTR5 LTR ERV1 757 2438 0 1718 131 0 0 chr4 1812128 1812364 -200515983 - AluJb SINE Alu -76 236 1 481 285 0 121 chr4 1812406 1812711 -200515636 - L1ME3A LINE L1 -1316 4830 4563 243 296 45 15 chr4 1813225 1813357 -200514990 - MER5B DNA MER1_type -2 176 41 516 344 100 32 chr4 1813404 1813826 -200514521 + L2 LINE L2 2223 2615 -699 2276 110 3 0 chr4 1813826 1814127 -200514220 + AluSp SINE Alu 1 302 -11 2438 109 0 0 chr4 1814127 1814439 -200513908 + AluSx SINE Alu 1 312 0 516 344 100 32 chr4 1814439 1814470 -200513877 + L2 LINE L2 2615 2642 -672 5075 131 14 74 chr4 1814470 1815386 -200512961 + L1MC1 LINE L1 5452 6312 -21 1888 171 0 0 chr4 1815386 1815679 -200512668 - AluJo SINE Alu -19 293 1 5075 131 14 74 chr4 1815679 1815700 -200512647 + L1MC1 LINE L1 6312 6333 0 516 344 100 32 chr4 1815700 1815863 -200512484 + L2 LINE L2 2642 2883 -431 2642 188 47 55 chr4 1816048 1816597 -200511750 + MLT2B3 LTR ERVL 1 545 -9 425 207 38 110 chr4 1817156 1817219 -200511128 + L1M4 LINE L1 2760 2826 -3320 2187 124 0 0 chr4 1817219 1817510 -200510837 + AluSq SINE Alu 1 291 -22 425 207 38 110 chr4 1817510 1817683 -200510664 + L1M4 LINE L1 2826 2979 -3167 317 217 66 9 chr4 1817689 1817795 -200510552 - L2 LINE L2 -19 3294 3183 219 294 166 30 chr4 1818710 1818975 -200509372 - L2 LINE L2 -399 2915 2615 367 277 0 0 chr4 1819189 1819283 -200509064 - MIR SINE MIR -69 193 100 1630 181 7 24 chr4 1820877 1821170 -200507177 + AluJo SINE Alu 5 292 -20 938 141 0 0 chr4 1821259 1821401 -200506946 + FLAM_C SINE Alu 1 142 -1 321 250 151 12 chr4 1821585 1821757 -200506590 + L1ME LINE L1 5254 5449 -713 207 0 0 0 chr4 1821825 1821848 -200506499 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 450 325 95 11 chr4 1822187 1822571 -200505776 + L1ME LINE L1 5402 5816 -354 430 232 10 0 chr4 1822895 1822994 -200505353 - L1MA4A LINE L1 -21 6282 6183 660 188 11 40 chr4 1822995 1823171 -200505176 - L1MA4A LINE L1 -183 6120 5950 2137 130 0 3 chr4 1824424 1824723 -200503624 - AluSx SINE Alu -14 298 1 304 307 70 42 chr4 1824979 1825220 -200503127 - L1M4 LINE L1 -1443 4703 4456 198 304 104 26 chr4 1826178 1826293 -200502054 - MIR SINE MIR -111 151 28 344 147 0 93 chr4 1827212 1827287 -200501060 + MIR SINE MIR 86 153 -109 311 206 62 89 chr4 1827536 1827682 -200500665 + LTR67 LTR ERVL 416 557 0 2151 141 0 0 chr4 1828214 1828511 -200499836 - AluSx SINE Alu -15 297 1 2307 115 0 3 chr4 1830732 1831045 -200497302 - AluSx SINE Alu 0 312 1 21 0 0 0 chr4 1831056 1831077 -200497270 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr4 1831099 1831119 -200497228 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 2305 75 0 69 chr4 1831296 1831614 -200496733 + AluY SINE Alu 1 296 -15 4240 174 76 32 chr4 1831641 1831783 -200496564 + L1MB7 LINE L1 4752 4886 -1298 1700 202 64 36 chr4 1831783 1832233 -200496114 + MLT1C LTR MaLR 5 467 0 4240 174 76 32 chr4 1832233 1833444 -200494903 + L1MB7 LINE L1 4886 6179 -5 1949 112 101 0 chr4 1833477 1833753 -200494594 - AluSx SINE Alu -8 304 1 350 279 51 35 chr4 1833868 1834065 -200494282 + HAL1b LINE L1 340 539 -809 2893 207 70 60 chr4 1834095 1835063 -200493284 + L1MC5 LINE L1 6530 7527 -434 2348 104 3 3 chr4 1835063 1835372 -200492975 + AluSx SINE Alu 1 309 -3 2893 207 70 60 chr4 1835372 1835507 -200492840 + L1MC5 LINE L1 7527 7659 -302 7064 176 54 49 chr4 1835521 1836830 -200491517 + L1MA4 LINE L1 14 1314 -5014 2122 125 0 0 chr4 1836830 1837143 -200491204 - AluSx SINE Alu 0 313 1 7064 176 54 49 chr4 1837143 1837429 -200490918 + L1MA4 LINE L1 1314 1597 -4731 1761 164 0 18 chr4 1837429 1837715 -200490632 + AluJo SINE Alu 2 282 -30 7064 176 54 49 chr4 1837715 1837918 -200490429 + L1MA4 LINE L1 1597 1797 -4531 2447 63 0 7 chr4 1837918 1838265 -200490082 + AluY SINE Alu 1 311 0 7064 176 54 49 chr4 1838265 1838937 -200489410 + L1MA4 LINE L1 1797 2479 -3849 5902 131 55 25 chr4 1838921 1838957 -200489390 + L1MA4 LINE L1 4712 4745 -1737 * 2549 69 0 0 chr4 1838957 1839261 -200489086 + AluY SINE Alu 1 304 -7 5902 131 55 25 chr4 1839261 1839348 -200488999 + L1MA4 LINE L1 4745 4828 -1654 2322 94 13 0 chr4 1839348 1839646 -200488701 + AluSc SINE Alu 1 302 -7 5902 131 55 25 chr4 1839646 1841235 -200487112 + L1MA4 LINE L1 4828 6475 -7 418 138 49 183 chr4 1841258 1841466 -200486881 + L1MC5 LINE L1 7645 7817 -144 2050 93 0 7 chr4 1841466 1841735 -200486612 + AluSg SINE Alu 35 301 -9 418 138 49 183 chr4 1841735 1841772 -200486575 + L1MC5 LINE L1 7817 7857 -104 2116 102 39 0 chr4 1841952 1842237 -200486110 - AluSg SINE Alu -14 296 1 27 61 0 15 chr4 1842260 1842285 -200486062 + AT_rich Low_complexity Low_complexity 1 25 -40 851 146 0 0 chr4 1842285 1842415 -200485932 + AluJ SINE Alu 1 130 -172 27 61 0 15 chr4 1842415 1842455 -200485892 + AT_rich Low_complexity Low_complexity 25 65 0 391 257 0 26 chr4 1843030 1843143 -200485204 - MIR SINE MIR -82 180 71 562 317 23 58 chr4 1843590 1843849 -200484498 - MIR SINE MIR -1 261 12 905 131 0 91 chr4 1844332 1844508 -200483839 + AluJ SINE Alu 132 291 -21 225 214 0 0 chr4 1844509 1844565 -200483782 - L1MC4 LINE L1 -1339 6703 6648 248 254 56 14 chr4 1844893 1844964 -200483383 - L2 LINE L2 -8 3305 3232 1632 158 4 36 chr4 1845061 1845339 -200483008 - AluJo SINE Alu 0 312 44 407 207 47 64 chr4 1845390 1845556 -200482791 + L1MC4 LINE L1 7084 7247 -740 723 123 66 0 chr4 1845742 1845864 -200482483 - MER53 DNA DNA -59 130 1 298 267 62 27 chr4 1845893 1846039 -200482308 + L1MC5 LINE L1 7268 7418 -543 229 243 43 14 chr4 1846065 1846135 -200482212 + L1MC4 LINE L1 7586 7657 -385 192 288 125 11 chr4 1846447 1846631 -200481716 - L2 LINE L2 -297 3016 2812 257 91 0 0 chr4 1846678 1846711 -200481636 - U2 snRNA snRNA -152 36 4 1204 285 66 2 chr4 1846720 1847173 -200481174 - L2 LINE L2 -537 2777 2296 1520 236 39 16 chr4 1848505 1848996 -200479351 + L1M4 LINE L1 4108 4609 -1537 2051 126 10 10 chr4 1849175 1849476 -200478871 - AluSx SINE Alu -11 301 1 1321 170 54 35 chr4 1849572 1849889 -200478458 + L1M4 LINE L1 4440 4762 -1384 940 202 21 0 chr4 1849906 1850094 -200478253 + L1PB1 LINE L1 6 197 -6666 * 14974 189 23 17 chr4 1850091 1850585 -200477762 + L1PB1 LINE L1 1392 1882 -4985 2332 88 0 38 chr4 1850585 1850904 -200477443 + AluSc SINE Alu 1 307 -2 14974 189 23 17 chr4 1850904 1851719 -200476628 + L1PB1 LINE L1 1882 2691 -4176 194 0 39 0 chr4 1851719 1851745 -200476602 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 14974 189 23 17 chr4 1851745 1852055 -200476292 + L1PB1 LINE L1 2691 2998 -3869 2270 114 0 0 chr4 1852055 1852354 -200475993 + AluSx SINE Alu 14 312 0 14974 189 23 17 chr4 1852354 1852900 -200475447 + L1PB1 LINE L1 2998 3539 -3328 2235 115 0 3 chr4 1852900 1853196 -200475151 + AluSc SINE Alu 1 295 -14 14974 189 23 17 chr4 1853196 1853429 -200474918 + L1PB1 LINE L1 3539 3769 -3098 2337 94 7 3 chr4 1853429 1853736 -200474611 + AluSq SINE Alu 2 309 -4 14974 189 23 17 chr4 1853736 1855194 -200473153 + L1PB1 LINE L1 3769 5217 -1650 2364 96 0 7 chr4 1855194 1855495 -200472852 + AluSg SINE Alu 1 299 -11 14974 189 23 17 chr4 1855495 1856925 -200471422 + L1PB1 LINE L1 5217 6782 -85 307 66 0 66 chr4 1856925 1856986 -200471361 + (GGAAA)n Simple_repeat Simple_repeat 1 57 0 1701 159 66 3 chr4 1857007 1857433 -200470914 + L1M4 LINE L1 5149 5597 -587 2053 117 7 0 chr4 1858309 1858599 -200469748 + AluSq SINE Alu 1 292 -21 2187 109 3 0 chr4 1858801 1859103 -200469244 + AluSg SINE Alu 1 303 -7 1380 201 100 75 chr4 1859127 1859253 -200469094 + Charlie2 DNA MER1_type 2169 2290 -572 1895 161 0 0 chr4 1859253 1859563 -200468784 - AluJb SINE Alu -2 310 1 1380 201 100 75 chr4 1859563 1859586 -200468761 + Charlie2 DNA MER1_type 2290 2311 -551 212 75 0 25 chr4 1859586 1859626 -200468721 + (TA)n Simple_repeat Simple_repeat 2 40 0 1380 201 100 75 chr4 1859626 1859898 -200468449 + Charlie2 DNA MER1_type 2311 2575 -287 1723 157 7 14 chr4 1859898 1860237 -200468110 + AluJb SINE Alu 1 312 0 1978 111 14 0 chr4 1860239 1860519 -200467828 + AluSg SINE Alu 1 284 -26 378 0 0 0 chr4 1860522 1860564 -200467783 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 2003 104 7 0 chr4 1860569 1860899 -200467448 + AluSx SINE Alu 3 334 0 1380 201 100 75 chr4 1860899 1861094 -200467253 + Charlie2 DNA MER1_type 2579 2824 -38 1695 135 0 113 chr4 1861094 1861440 -200466907 + AluJb SINE Alu 3 302 0 1380 201 100 75 chr4 1861440 1861481 -200466866 + Charlie2 DNA MER1_type 2824 2862 0 318 211 18 0 chr4 1861712 1861769 -200466578 - MIR SINE MIR -197 65 8 1722 157 0 35 chr4 1861965 1862284 -200466063 - AluJo SINE Alu -4 308 1 303 330 28 132 chr4 1862290 1862608 -200465739 + L2 LINE L2 2988 3272 0 401 240 0 0 chr4 1863168 1863243 -200465104 - MIR SINE MIR -184 78 4 528 296 161 28 chr4 1863257 1863552 -200464795 + L1ME LINE L1 4342 4685 -1461 2127 112 0 0 chr4 1863552 1863847 -200464500 + AluSx SINE Alu 1 295 -17 528 296 161 28 chr4 1863847 1863875 -200464472 + L1ME LINE L1 4685 4708 -1438 246 286 8 17 chr4 1864043 1864162 -200464185 + L1P LINE L1 5244 5361 -785 320 314 38 9 chr4 1864222 1864327 -200464020 + L1ME LINE L1 5510 5617 -2191 359 233 0 117 chr4 1864428 1864548 -200463799 - L1MC4 LINE L1 -1323 6719 6614 282 315 64 34 chr4 1864610 1864877 -200463470 + L1ME LINE L1 5605 5882 -239 561 284 105 4 chr4 1865006 1865235 -200463112 - LTR16A LTR ERVL -97 353 102 258 250 68 61 chr4 1865422 1865570 -200462777 - HERVL LTR ERVL -324 5330 5182 1104 335 113 25 chr4 1865669 1866608 -200461739 - HERVL LTR ERVL -661 5103 4082 545 264 59 42 chr4 1866671 1866910 -200461437 - HERVL LTR ERVL -1333 3663 3421 904 317 117 15 chr4 1866927 1867447 -200460900 - ERVL LTR ERVL -2076 3688 3116 659 191 32 8 chr4 1867619 1867745 -200460602 + FLAM_A SINE Alu 13 141 -1 2114 85 7 43 chr4 1867748 1868053 -200460294 + AluSp SINE Alu 1 294 -19 630 263 100 11 chr4 1868056 1868246 -200460101 - ERVL LTR ERVL -2069 2927 2721 2345 253 110 21 chr4 1868306 1869052 -200459295 - ERVL LTR ERVL -2427 2569 1758 2195 234 66 12 chr4 1869072 1869663 -200458684 - ERVL LTR ERVL -3545 1451 829 605 246 186 80 chr4 1869663 1870351 -200457996 + LTR41 LTR ERVL 1 761 -12 857 183 35 18 chr4 1870735 1870904 -200457443 - AluJb SINE Alu -12 300 129 641 110 0 20 chr4 1870916 1871016 -200457331 + MER4A LTR ERV1 1 98 -566 2342 91 66 43 chr4 1871022 1871177 -200457170 + MER4A LTR ERV1 261 411 -253 1868 146 7 0 chr4 1871177 1871472 -200456875 - AluSx SINE Alu -15 297 1 2342 91 66 43 chr4 1871472 1871711 -200456636 + MER4A LTR ERV1 411 664 0 854 164 205 52 chr4 1871872 1872140 -200456207 + AluJb SINE Alu 2 310 -2 1032 250 122 22 chr4 1872225 1872585 -200455762 - ERVL LTR ERVL -4600 396 1 235 208 194 14 chr4 1872585 1872657 -200455690 - LTR16A LTR ERVL 0 450 366 6127 120 36 106 chr4 1872776 1872838 -200455509 - Tigger3b DNA MER2_type -1818 1210 1145 2096 156 3 9 chr4 1872838 1873177 -200455170 + MER1B DNA MER1_type 1 337 0 6127 120 36 106 chr4 1873177 1874266 -200454081 - Tigger3b DNA MER2_type -1883 1145 157 2139 104 3 3 chr4 1874266 1874563 -200453784 + AluSq SINE Alu 1 297 -16 6127 120 36 106 chr4 1874563 1874709 -200453638 - Tigger3b DNA MER2_type -2871 157 2 22 70 0 0 chr4 1874717 1874760 -200453587 + AT_rich Low_complexity Low_complexity 1 43 0 201 133 0 0 chr4 1874855 1874885 -200453462 + (TATG)n Simple_repeat Simple_repeat 3 32 0 1863 121 4 0 chr4 1874907 1875179 -200453168 + AluSx SINE Alu 37 309 -3 21 36 0 0 chr4 1875282 1875310 -200453037 + AT_rich Low_complexity Low_complexity 1 28 0 1674 150 46 4 chr4 1875320 1875600 -200452747 + AluJo SINE Alu 4 295 -17 495 296 123 28 chr4 1875602 1875936 -200452411 - MLT1J LTR MaLR -71 440 38 609 263 44 12 chr4 1876595 1876755 -200451592 + MLT1E LTR MaLR 1 165 -428 1394 231 87 9 chr4 1876781 1877115 -200451232 + MLT1E LTR MaLR 226 585 -8 506 135 0 0 chr4 1877237 1877311 -200451036 - FLAM SINE Alu -16 127 54 180 143 0 0 chr4 1877843 1877885 -200450462 + (A)n Simple_repeat Simple_repeat 1 42 0 2104 73 49 0 chr4 1877947 1878234 -200450113 - AluY SINE Alu -10 301 1 2045 92 14 7 chr4 1879141 1879456 -200448891 + AluSq SINE Alu 1 317 0 1971 131 0 0 chr4 1879615 1879898 -200448449 + AluSx SINE Alu 5 287 -25 2049 104 3 3 chr4 1880917 1881205 -200447142 + AluSc SINE Alu 1 288 -21 22 0 0 0 chr4 1881769 1881791 -200446556 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr4 1881809 1881834 -200446513 + AT_rich Low_complexity Low_complexity 1 25 0 294 232 274 0 chr4 1882024 1882119 -200446228 - L2 LINE L2 0 3313 3193 401 276 79 26 chr4 1882525 1882677 -200445670 + MER5A DNA MER1_type 29 188 -1 444 221 19 10 chr4 1883010 1883114 -200445233 + HsTC2 DNA Tc2 1 105 -1793 1132 213 98 21 chr4 1883116 1883454 -200444893 + HsTC2 DNA Tc2 1522 1885 -13 527 308 88 65 chr4 1883456 1883807 -200444540 + L1ME4a LINE L1 5524 5882 -239 575 248 27 148 chr4 1884228 1884488 -200443859 + L1M4 LINE L1 2272 2475 -3671 2176 95 0 0 chr4 1884488 1884782 -200443565 - AluSg SINE Alu -16 294 1 575 248 27 148 chr4 1884782 1884892 -200443455 + L1M4 LINE L1 2475 2597 -3549 597 116 67 37 chr4 1884912 1885032 -200443315 + L1M3 LINE L1 5429 5554 -626 446 208 43 87 chr4 1885021 1885279 -200443068 + L1ME1 LINE L1 5678 5904 -262 * 1915 105 7 18 chr4 1886175 1886499 -200441848 + AluSx SINE Alu 1 321 0 1384 156 80 51 chr4 1886771 1887046 -200441301 + AluJo SINE Alu 13 295 -17 330 174 11 33 chr4 1887046 1887138 -200441209 + GA-rich Low_complexity Low_complexity 1 90 0 196 272 102 37 chr4 1887146 1887338 -200441009 + MIR SINE MIR 16 218 -44 372 253 91 0 chr4 1887475 1887574 -200440773 - MER91C DNA MER1_type 0 140 33 214 218 18 0 chr4 1888027 1888082 -200440265 + A-rich Low_complexity Low_complexity 5 60 0 287 204 0 84 chr4 1891893 1892035 -200436312 + (CGGGG)n Simple_repeat Simple_repeat 4 133 0 2273 51 34 3 chr4 1892377 1892425 -200435922 + AluSg SINE Alu 1 46 -264 180 0 0 0 chr4 1892425 1892445 -200435902 + (G)n Simple_repeat Simple_repeat 1 20 0 2273 51 34 3 chr4 1892445 1892688 -200435659 + AluSg SINE Alu 46 301 -9 267 261 103 18 chr4 1892803 1892969 -200435378 - LTR37B LTR ERV1 -152 316 106 770 74 11 63 chr4 1893494 1893683 -200434664 + (CAGAGA)n Simple_repeat Simple_repeat 2 180 0 228 292 0 0 chr4 1899426 1899491 -200428856 + (TG)n Simple_repeat Simple_repeat 1 65 0 209 262 0 0 chr4 1899675 1899717 -200428630 + (CGGA)n Simple_repeat Simple_repeat 2 43 0 314 244 51 0 chr4 1903796 1903874 -200424473 - L1ME4a LINE L1 -57 6064 5983 345 306 85 56 chr4 1903878 1904307 -200424040 + L1ME4a LINE L1 5127 6120 -1 217 189 167 33 chr4 1907323 1907413 -200420934 + L2 LINE L2 3133 3234 -38 334 311 67 8 chr4 1909891 1910010 -200418337 + MIR SINE MIR 94 219 -43 24 67 0 0 chr4 1911024 1911069 -200417278 + GC_rich Low_complexity Low_complexity 1 45 0 40 87 0 0 chr4 1911135 1911238 -200417109 + GC_rich Low_complexity Low_complexity 1 103 0 204 184 41 0 chr4 1911263 1911312 -200417035 + G-rich Low_complexity Low_complexity 4 54 0 34 42 0 0 chr4 1911441 1911489 -200416858 + GC_rich Low_complexity Low_complexity 1 48 0 48 72 0 0 chr4 1911577 1911674 -200416673 + GC_rich Low_complexity Low_complexity 1 97 0 201 238 16 16 chr4 1911794 1911857 -200416490 + (CCGGG)n Simple_repeat Simple_repeat 3 65 0 28 29 0 0 chr4 1912194 1912229 -200416118 + GC_rich Low_complexity Low_complexity 1 35 0 2162 60 53 3 chr4 1912738 1913023 -200415324 - AluSc SINE Alu -10 299 1 291 269 47 32 chr4 1915697 1915858 -200412489 + MIR SINE MIR 89 250 -12 192 338 44 22 chr4 1915851 1915987 -200412360 + L3 LINE CR1 1336 1474 -103 * 205 290 116 0 chr4 1917820 1917889 -200410458 + MIR SINE MIR 107 183 -79 296 276 13 0 chr4 1918162 1918238 -200410109 - MER81 DNA DNA -36 78 2 189 264 0 0 chr4 1922112 1922184 -200406163 + (TG)n Simple_repeat Simple_repeat 1 72 0 637 275 117 43 chr4 1924190 1924605 -200403742 + MLT1D LTR MaLR 22 467 0 291 206 28 19 chr4 1924948 1925055 -200403292 - HAL1 LINE L1 -1331 1176 1069 335 361 100 11 chr4 1925068 1925248 -200403099 - HAL1 LINE L1 -1490 1017 822 284 222 25 25 chr4 1925257 1925338 -200403009 + L1ME LINE L1 5510 5590 -572 271 266 112 21 chr4 1925909 1926052 -200402295 - HAL1 LINE L1 -1814 693 538 1961 229 50 12 chr4 1926069 1926584 -200401763 + L1MB3 LINE L1 5647 6181 -2 363 222 0 0 chr4 1926707 1926788 -200401559 + L1MB7 LINE L1 6104 6184 0 2264 91 3 3 chr4 1926792 1927101 -200401246 + AluSx SINE Alu 2 310 -2 1370 203 29 73 chr4 1927108 1927846 -200400501 + L1MB7 LINE L1 4316 5086 -1098 1584 133 0 4 chr4 1927846 1928079 -200400268 - AluJb SINE Alu -78 234 3 1370 203 29 73 chr4 1928079 1928766 -200399581 + L1MB7 LINE L1 5086 5802 -382 1965 106 7 0 chr4 1928766 1929041 -200399306 + AluSx SINE Alu 24 300 -12 1370 203 29 73 chr4 1929041 1929091 -200399256 + L1MB7 LINE L1 5802 5853 -331 2373 57 10 7 chr4 1929091 1929389 -200398958 + AluY SINE Alu 1 299 -12 1370 203 29 73 chr4 1929389 1929621 -200398726 + L1MB7 LINE L1 5853 6130 -54 302 328 61 23 chr4 1929668 1929799 -200398548 + L1ME LINE L1 5722 5857 -264 1857 142 6 25 chr4 1929818 1930136 -200398211 + AluJo SINE Alu 1 312 0 2053 175 47 11 chr4 1930933 1931315 -200397032 - MSTD LTR MaLR 0 396 1 773 148 8 0 chr4 1932411 1932533 -200395814 + FLAM_A SINE Alu 20 142 0 1061 163 2 6 chr4 1932695 1933203 -200395144 + (TCCA)n Simple_repeat Simple_repeat 1 506 0 637 200 8 8 chr4 1933851 1933971 -200394376 - AluJb SINE Alu -47 265 146 2416 197 15 15 chr4 1934513 1934979 -200393368 + MLT1C LTR MaLR 1 466 -1 394 231 29 0 chr4 1936081 1936185 -200392162 + MLT1E3 LTR MaLR 442 548 -76 753 252 204 21 chr4 1936448 1936827 -200391520 + MLT1D LTR MaLR 52 389 -7 182 170 0 64 chr4 1937731 1937778 -200390569 - L2 LINE L2 -220 3052 3009 288 218 0 0 chr4 1938230 1938285 -200390062 + MIR SINE MIR 92 146 -116 1632 174 54 14 chr4 1938290 1938584 -200389763 + AluJo SINE Alu 1 306 -6 1686 186 13 0 chr4 1938596 1938903 -200389444 + AluSx SINE Alu 1 311 -1 346 178 78 9 chr4 1939186 1939285 -200389062 - AluJ/FLAM SINE Alu -225 77 1 247 167 0 121 chr4 1939285 1939351 -200388996 - MIR SINE MIR -126 136 79 188 298 0 0 chr4 1940813 1940860 -200387487 - L3b LINE CR1 -237 1346 1300 5368 235 53 35 chr4 1942239 1943066 -200385281 + L1ME LINE L1 3475 4285 -1861 2502 57 0 0 chr4 1943066 1943366 -200384981 + AluY SINE Alu 1 300 -11 5368 235 53 35 chr4 1943366 1944424 -200383923 + L1ME LINE L1 4285 5395 -751 822 126 15 37 chr4 1944435 1944570 -200383777 + FLAM_A SINE Alu 10 141 -1 675 174 58 0 chr4 1944573 1944711 -200383636 + L1ME LINE L1 5392 5537 -629 2122 113 3 29 chr4 1944754 1945064 -200383283 - AluSq SINE Alu -10 303 2 255 319 148 0 chr4 1945237 1945372 -200382975 + L2 LINE L2 2919 3073 -240 308 298 21 0 chr4 1948962 1949056 -200379291 + L1ME LINE L1 5561 5656 -465 697 243 98 6 chr4 1949056 1949229 -200379118 + AluJo SINE Alu 120 308 -4 330 183 11 21 chr4 1949229 1949322 -200379025 + G-rich Low_complexity Low_complexity 2 93 0 301 275 142 0 chr4 1949330 1949450 -200378897 + L1M4 LINE L1 3081 3217 -2929 1681 181 7 16 chr4 1949482 1949792 -200378555 - AluJo SINE Alu -3 309 3 244 228 0 0 chr4 1949799 1949856 -200378491 + L1ME4a LINE L1 6061 6117 -4 209 276 67 75 chr4 1950830 1950964 -200377383 + L2 LINE L2 3138 3270 -2 1084 291 59 0 chr4 1952162 1952568 -200375779 + L1MB7 LINE L1 5477 5906 -278 304 215 43 32 chr4 1952701 1952794 -200375553 + L1MB7 LINE L1 5908 6001 -183 399 296 54 96 chr4 1955599 1955879 -200372468 - L2 LINE L2 0 3272 3005 254 281 0 0 chr4 1956055 1956112 -200372235 - L1ME3A LINE L1 -69 6170 6114 571 151 35 126 chr4 1956271 1956470 -200371877 - MER53 DNA DNA -6 183 3 312 351 161 0 chr4 1956475 1956686 -200371661 - L1ME3A LINE L1 -306 5933 5689 1372 241 71 41 chr4 1956747 1957192 -200371155 - L1ME3A LINE L1 -652 5587 5106 1604 159 37 40 chr4 1957192 1957488 -200370859 - AluJo SINE Alu -15 297 3 1372 241 71 41 chr4 1957488 1957795 -200370552 - L1ME3A LINE L1 -1133 5106 4810 198 0 0 0 chr4 1957811 1957833 -200370514 + (TTC)n Simple_repeat Simple_repeat 3 24 0 835 219 0 0 chr4 1957835 1957981 -200370366 - FRAM SINE Alu -30 146 1 376 252 135 0 chr4 1958002 1958113 -200370234 + L1ME LINE L1 5645 5770 -400 355 206 0 0 chr4 1958127 1958195 -200370152 - L1ME3A LINE L1 -1464 4751 4684 231 167 0 0 chr4 1958195 1958237 -200370110 + GA-rich Low_complexity Low_complexity 1 42 0 913 112 22 11 chr4 1958262 1958440 -200369907 + GA-rich Low_complexity Low_complexity 1 180 0 241 244 0 0 chr4 1958440 1958485 -200369862 + polypurine Low_complexity Low_complexity 1 45 0 406 332 59 5 chr4 1958497 1958717 -200369630 - L1ME3A LINE L1 -1538 4677 4446 1466 185 188 28 chr4 1958717 1959111 -200369236 + MSTB2 LTR MaLR 1 457 0 2736 249 32 78 chr4 1959114 1959736 -200368611 - L1ME3A LINE L1 -1774 4441 3792 1847 190 0 0 chr4 1959736 1960036 -200368311 - AluJb SINE Alu -10 302 3 2736 249 32 78 chr4 1960036 1960221 -200368126 - L1ME3A LINE L1 -2423 3792 3600 1832 189 3 0 chr4 1960221 1960518 -200367829 + AluJb SINE Alu 1 298 -14 2736 249 32 78 chr4 1960518 1960943 -200367404 - L1ME3A LINE L1 -2615 3600 3283 2191 128 0 7 chr4 1960943 1961239 -200367108 + AluSg SINE Alu 1 294 -16 2736 249 32 78 chr4 1961239 1961473 -200366874 - L1ME3A LINE L1 -2932 3283 3040 1129 192 0 0 chr4 1961474 1961656 -200366691 - AluJo SINE Alu -10 302 121 438 173 0 37 chr4 1961732 1961813 -200366534 + AluSc SINE Alu 122 199 -110 659 118 0 0 chr4 1961815 1961908 -200366439 - AluJ/FLAM SINE Alu -218 94 2 1277 279 52 67 chr4 1961914 1961963 -200366384 - L1MEc LINE L1 -3184 3031 2983 607 180 62 23 chr4 1961963 1962091 -200366256 + FLAM_C SINE Alu 1 133 0 1277 279 52 67 chr4 1962091 1962146 -200366201 - L1MEc LINE L1 -3232 2983 2929 2663 49 3 0 chr4 1962146 1962454 -200365893 + AluY SINE Alu 1 309 -2 2163 139 0 3 chr4 1962462 1962765 -200365582 + AluSx SINE Alu 1 302 -10 1277 279 52 67 chr4 1962765 1962948 -200365399 - L1MEc LINE L1 -3293 2922 2738 1710 204 10 0 chr4 1962948 1963257 -200365090 - AluJo SINE Alu 0 312 1 1277 279 52 67 chr4 1963257 1963287 -200365060 - L1MEc LINE L1 -3477 2738 2709 1890 109 81 21 chr4 1963287 1963570 -200364777 + AluSx SINE Alu 5 304 -8 1277 279 52 67 chr4 1963570 1964366 -200363981 - L1MEc LINE L1 -3506 2709 1945 1877 137 28 11 chr4 1964491 1964775 -200363572 - AluJo SINE Alu -23 289 1 925 257 63 86 chr4 1964786 1964979 -200363368 - L1MEc LINE L1 -4634 1762 1566 2043 123 44 0 chr4 1964979 1965272 -200363075 - AluSx SINE Alu -6 306 1 925 257 63 86 chr4 1965272 1965868 -200362479 - L1MEc LINE L1 -4830 1566 991 1964 154 6 40 chr4 1965881 1966205 -200362142 - 7SLRNA srpRNA srpRNA -6 314 2 2146 116 0 0 chr4 1966385 1966669 -200361678 - AluY SINE Alu -5 306 23 2345 112 3 10 chr4 1966673 1966987 -200361360 - AluSx SINE Alu 0 312 1 2317 112 3 0 chr4 1967326 1967631 -200360716 - AluSx SINE Alu -6 306 1 2022 89 4 0 chr4 1967975 1968223 -200360124 + AluSx SINE Alu 1 249 -63 878 163 42 48 chr4 1968462 1968628 -200359719 + AluJo SINE Alu 6 170 -142 283 309 0 0 chr4 1969493 1969577 -200358770 + (TGG)n Simple_repeat Simple_repeat 1 84 0 3570 189 83 28 chr4 1972297 1973242 -200355105 - L1MB5 LINE L1 0 6174 5152 3394 22 0 0 chr4 1973242 1973652 -200354695 - L1PA2 LINE L1 0 6155 5746 3570 189 83 28 chr4 1973652 1973764 -200354583 - L1MB5 LINE L1 -1022 5152 5048 1482 168 111 0 chr4 1973765 1974062 -200354285 - MLT2D LTR ERVL -8 406 77 1684 203 30 0 chr4 1975292 1975592 -200352755 - AluJo SINE Alu -3 309 1 6880 146 39 58 chr4 1975615 1976666 -200351681 - L1 LINE L1 -845 5301 4232 2238 110 0 0 chr4 1976666 1976948 -200351399 + AluSg SINE Alu 1 282 -28 522 0 0 0 chr4 1976948 1977006 -200351341 + (TA)n Simple_repeat Simple_repeat 2 59 0 6880 146 39 58 chr4 1977006 1977478 -200350869 - L1 LINE L1 -1912 4234 3805 4333 170 60 9 chr4 1977477 1978372 -200349975 + L1MA7 LINE L1 5341 6281 -10 * 615 126 0 0 chr4 1978390 1978485 -200349862 - MLT2D LTR ERVL -319 95 1 2327 211 27 9 chr4 1978516 1979075 -200349272 - L1MB5 LINE L1 -1188 4958 4390 821 110 0 0 chr4 1979106 1979233 -200349114 + L1MB4 LINE L1 5786 5912 -271 311 145 87 0 chr4 1979264 1979333 -200349014 + L1MB4 LINE L1 6106 6180 0 250 288 16 24 chr4 1979482 1979607 -200348740 - L1ME LINE L1 -325 5796 5673 901 203 52 48 chr4 1979728 1979979 -200348368 + L1MB8 LINE L1 5914 6165 -13 237 253 6 69 chr4 1980163 1980337 -200348010 + GA-rich Low_complexity Low_complexity 3 165 0 367 243 0 42 chr4 1980734 1980878 -200347469 + GA-rich Low_complexity Low_complexity 2 139 0 715 179 0 0 chr4 1981058 1981175 -200347172 + FLAM_C SINE Alu 2 118 -25 185 32 0 65 chr4 1981190 1981221 -200347126 + (TAAAAA)n Simple_repeat Simple_repeat 2 30 0 192 314 0 0 chr4 1982264 1982315 -200346032 + L2 LINE L2 3258 3308 -5 342 344 0 16 chr4 1982850 1983033 -200345314 + C-rich Low_complexity Low_complexity 1 180 0 261 55 0 73 chr4 1984435 1984490 -200343857 + (CCCCCT)n Simple_repeat Simple_repeat 2 52 0 994 224 117 13 chr4 1984850 1985149 -200343198 + LTR53 LTR ERVL 190 519 0 217 203 51 13 chr4 1986363 1986521 -200341826 + (AGGTG)n Simple_repeat Simple_repeat 3 166 0 182 224 48 0 chr4 1986537 1986684 -200341663 + (TGAG)n Simple_repeat Simple_repeat 3 156 0 1543 161 51 11 chr4 1987225 1987498 -200340849 + AluJo SINE Alu 5 288 -24 1996 128 0 17 chr4 1987928 1988242 -200340105 + AluSx SINE Alu 1 309 0 1855 119 51 10 chr4 1988437 1988731 -200339616 - AluY SINE Alu -2 309 4 342 139 0 0 chr4 1989512 1989584 -200338763 + (GGGGA)n Simple_repeat Simple_repeat 2 73 0 194 195 24 0 chr4 1990641 1990682 -200337665 + MIR SINE MIR 108 149 -113 2090 108 0 0 chr4 1991360 1991628 -200336719 + AluSx SINE Alu 1 268 -44 928 186 0 0 chr4 1992018 1992179 -200336168 - FRAM SINE Alu -14 162 2 411 241 15 53 chr4 1992799 1992932 -200335415 - L1ME LINE L1 -457 5664 5537 22 35 0 0 chr4 1993097 1993126 -200335221 + AT_rich Low_complexity Low_complexity 1 29 0 375 215 84 9 chr4 1993454 1993561 -200334786 + L2 LINE L2 3187 3301 -12 6318 226 64 42 chr4 1993561 1994237 -200334110 + L1MEc LINE L1 34 693 -5522 2368 99 3 13 chr4 1994237 1994551 -200333796 + AluSp SINE Alu 1 311 -2 2258 80 42 3 chr4 1994552 1994840 -200333507 + AluY SINE Alu 1 299 -12 6318 226 64 42 chr4 1994840 1995669 -200332678 + L1MEc LINE L1 693 1502 -4713 2441 71 0 43 chr4 1995669 1995993 -200332354 + AluY SINE Alu 1 310 -1 6318 226 64 42 chr4 1995993 1998267 -200330080 + L1MEc LINE L1 1502 3924 -2291 286 254 17 1 chr4 1998280 1998356 -200329991 + MER5B DNA MER1_type 75 163 -26 246 299 56 56 chr4 1998644 1998751 -200329596 + MIR3 SINE MIR 95 201 -7 2123 36 4 4 chr4 1998877 1999151 -200329196 + L1PA3 LINE L1 5880 6153 -2 232 250 140 20 chr4 1999195 1999295 -200329052 - L2 LINE L2 -9 3304 3193 1016 217 165 37 chr4 1999353 1999649 -200328698 + L1MEc LINE L1 3908 4270 -1945 345 24 0 0 chr4 1999649 1999691 -200328656 + (CA)n Simple_repeat Simple_repeat 2 43 0 1016 217 165 37 chr4 1999691 1999795 -200328552 + L1MEc LINE L1 4270 4359 -1856 2690 46 0 0 chr4 1999807 2000113 -200328234 + AluY SINE Alu 1 306 -5 3314 197 45 38 chr4 2000114 2000951 -200327396 + MER21B LTR ERV1 1 843 -20 330 241 0 0 chr4 2000969 2001056 -200327291 + L1MEc LINE L1 4354 4440 -1775 2192 105 0 0 chr4 2001056 2001333 -200327014 + AluSx SINE Alu 1 277 -35 971 203 30 0 chr4 2001333 2001530 -200326817 - MER21B LTR ERV1 -194 669 467 1021 209 67 4 chr4 2001580 2001805 -200326542 + MER8 DNA MER2_type 1 239 0 256 219 0 41 chr4 2001999 2002072 -200326275 + GA-rich Low_complexity Low_complexity 1 70 0 2425 105 0 0 chr4 2004078 2004383 -200323964 - AluSq SINE Alu -8 305 1 585 0 0 0 chr4 2004823 2004888 -200323459 + (TA)n Simple_repeat Simple_repeat 1 65 0 22 0 0 0 chr4 2004870 2004892 -200323455 + AT_rich Low_complexity Low_complexity 1 22 0 2362 109 0 0 chr4 2004894 2005197 -200323150 - AluSg SINE Alu -7 303 1 1862 163 3 3 chr4 2005207 2005495 -200322852 - AluJo SINE Alu -24 288 1 1915 124 0 59 chr4 2006478 2006785 -200321562 - AluSx SINE Alu -22 290 2 384 376 6 0 chr4 2007737 2007899 -200320448 + (TG)n Simple_repeat Simple_repeat 1 163 0 1493 185 10 89 chr4 2008288 2008399 -200319948 + MLT1B LTR MaLR 1 119 -271 1814 148 0 43 chr4 2008399 2008558 -200319789 - AluJo SINE Alu -20 292 151 2326 80 0 22 chr4 2008558 2008870 -200319477 - AluY SINE Alu -6 305 1 1814 148 0 43 chr4 2008870 2009015 -200319332 - AluJo SINE Alu -161 151 1 1493 185 10 89 chr4 2009015 2009309 -200319038 + MLT1B LTR MaLR 119 374 -16 444 67 0 0 chr4 2009979 2010039 -200318308 + (CA)n Simple_repeat Simple_repeat 1 60 0 1668 190 122 117 chr4 2012826 2013399 -200314948 + MER70B LTR ERVL 1 576 -2 322 324 41 14 chr4 2013402 2013547 -200314800 - MIR SINE MIR -77 185 37 254 153 85 17 chr4 2017634 2017693 -200310654 - L1MB7 LINE L1 -10 6174 6112 739 104 0 0 chr4 2017720 2017826 -200310521 + FLAM_C SINE Alu 37 142 -1 1020 178 23 0 chr4 2017826 2018000 -200310347 + AluJb SINE Alu 105 282 -30 2871 198 96 14 chr4 2018000 2018721 -200309626 - L1MB7 LINE L1 -57 6127 5348 900 221 82 41 chr4 2019092 2019440 -200308907 + MLT1C LTR MaLR 42 411 -56 2312 101 3 0 chr4 2019457 2019765 -200308582 - AluSc SINE Alu 0 309 1 191 36 36 0 chr4 2021265 2021293 -200307054 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1201 98 6 0 chr4 2072736 2072900 -200255447 + AluSp SINE Alu 58 222 -91 850 140 0 14 chr4 2072905 2073048 -200255299 + AluSc SINE Alu 164 304 -5 2193 97 0 0 chr4 2073137 2073426 -200254921 - AluSc SINE Alu -12 297 9 1926 96 0 83 chr4 2073524 2073708 -200254639 - AluSx SINE Alu -15 297 150 1929 125 31 0 chr4 2073708 2073995 -200254352 - AluSg SINE Alu -14 296 1 1926 96 0 83 chr4 2073995 2074134 -200254213 - AluSx SINE Alu -162 150 1 1933 126 3 7 chr4 2074775 2075076 -200253271 - AluSc SINE Alu -9 300 1 762 148 0 87 chr4 2075108 2075257 -200253090 + AluJb SINE Alu 4 139 -173 1956 122 0 46 chr4 2075265 2075592 -200252755 + AluSx SINE Alu 1 312 0 1184 216 7 49 chr4 2075972 2076110 -200252237 + AluJo SINE Alu 6 148 -164 2126 94 0 10 chr4 2076110 2076409 -200251938 + AluSg SINE Alu 1 296 -14 1184 216 7 49 chr4 2076409 2076576 -200251771 + AluJo SINE Alu 148 298 -14 730 247 105 34 chr4 2076632 2076677 -200251670 - L1ME3A LINE L1 -194 5972 5932 2379 75 0 0 chr4 2076677 2076982 -200251365 - AluSx SINE Alu -7 305 1 730 247 105 34 chr4 2076982 2077328 -200251019 - L1ME3A LINE L1 -234 5932 5556 1308 189 10 69 chr4 2077383 2077557 -200250790 - AluJo SINE Alu -24 288 138 2208 92 0 0 chr4 2077557 2077849 -200250498 + AluSg SINE Alu 1 292 -18 1308 189 10 69 chr4 2077849 2077980 -200250367 - AluJo SINE Alu -174 138 1 2236 208 86 88 chr4 2077991 2078646 -200249701 - L1ME1 LINE L1 -44 6122 5467 899 211 131 65 chr4 2078646 2078795 -200249552 - AluJo SINE Alu -9 293 155 1908 123 0 20 chr4 2078795 2079115 -200249232 + AluSq SINE Alu 1 314 0 899 211 131 65 chr4 2079115 2079239 -200249108 - AluJo SINE Alu -147 155 1 2236 208 86 88 chr4 2079239 2079275 -200249072 - L1ME1 LINE L1 -699 5467 5432 321 68 0 0 chr4 2079275 2079319 -200249028 + (TG)n Simple_repeat Simple_repeat 2 45 0 1973 129 3 0 chr4 2079320 2079614 -200248733 - AluSx SINE Alu -17 295 1 2236 208 86 88 chr4 2079614 2079761 -200248586 - L1ME1 LINE L1 -734 5432 5286 2177 91 7 0 chr4 2079761 2080059 -200248288 - AluSq SINE Alu -13 300 1 2236 208 86 88 chr4 2080059 2080155 -200248192 - L1ME1 LINE L1 -880 5286 5191 1926 148 0 0 chr4 2080155 2080445 -200247902 - AluSx SINE Alu -22 290 1 2236 208 86 88 chr4 2080445 2080611 -200247736 - L1ME1 LINE L1 -975 5191 5024 1972 126 7 10 chr4 2080613 2080923 -200247424 - AluSx SINE Alu -1 311 3 460 214 12 89 chr4 2080934 2081072 -200247275 - L1ME3A LINE L1 -965 5181 5057 2768 13 0 0 chr4 2081072 2081383 -200246964 - AluYa5 SINE Alu 0 311 1 460 214 12 89 chr4 2081383 2081412 -200246935 - L1ME3A LINE L1 -1089 5057 5027 2022 133 0 3 chr4 2081412 2081714 -200246633 - AluSg SINE Alu -9 301 1 1695 169 0 28 chr4 2081714 2082033 -200246314 - AluSx SINE Alu -1 311 1 544 247 45 56 chr4 2082037 2082115 -200246232 - L1ME3A LINE L1 -2274 3872 3795 2135 85 4 0 chr4 2082115 2082420 -200245927 - AluSp SINE Alu 0 309 4 2091 88 3 10 chr4 2082424 2082774 -200245573 - AluY SINE Alu 0 311 14 544 247 45 56 chr4 2082774 2082904 -200245443 - L1ME3A LINE L1 -2354 3792 3659 1272 181 17 0 chr4 2082904 2083136 -200245211 - MER46A DNA MER2_type 0 236 1 544 247 45 56 chr4 2083136 2083187 -200245160 - L1ME3A LINE L1 -2487 3659 3609 2304 223 106 66 chr4 2083202 2083516 -200244831 - L1ME3A LINE L1 -2734 3412 3112 1612 173 0 31 chr4 2083516 2083696 -200244651 - AluJo SINE Alu -2 310 143 2458 56 0 0 chr4 2083696 2083999 -200244348 - AluY SINE Alu -8 303 1 1612 173 0 31 chr4 2083999 2084136 -200244211 - AluJo SINE Alu -169 143 3 2304 223 106 66 chr4 2084136 2084221 -200244126 - L1ME3A LINE L1 -3034 3112 3032 2159 75 4 0 chr4 2084221 2084524 -200243823 - AluY SINE Alu 0 304 1 1812 151 10 3 chr4 2084531 2084835 -200243512 - AluSx SINE Alu -6 306 1 2304 223 106 66 chr4 2084835 2084871 -200243476 - L1ME3A LINE L1 -3119 3027 2994 814 206 6 24 chr4 2084871 2085036 -200243311 + FAM SINE Alu 1 162 -13 2304 223 106 66 chr4 2085036 2085061 -200243286 - L1ME3A LINE L1 -3152 2994 2971 2202 80 0 0 chr4 2085061 2085350 -200242997 - AluSc SINE Alu -4 305 17 2304 223 106 66 chr4 2085350 2085382 -200242965 - L1ME3A LINE L1 -3175 2971 2942 2002 138 51 28 chr4 2085382 2085738 -200242609 + THE1B LTR MaLR 1 364 0 2304 223 106 66 chr4 2085738 2085770 -200242577 - L1ME3A LINE L1 -3204 2942 2913 2008 120 0 3 chr4 2085770 2086071 -200242276 - AluSg SINE Alu -10 300 1 2304 223 106 66 chr4 2086071 2086673 -200241674 - L1ME3A LINE L1 -3233 2913 2226 299 173 0 19 chr4 2087020 2087072 -200241275 + Alu SINE Alu 2 52 -251 1498 166 6 110 chr4 2087185 2087296 -200241051 + AluJb SINE Alu 2 123 -179 2181 82 3 0 chr4 2087296 2087588 -200240759 - AluY SINE Alu -3 308 16 1898 115 31 0 chr4 2087596 2087883 -200240464 - AluSq SINE Alu -17 296 1 1498 166 6 110 chr4 2087883 2087898 -200240449 + AluJb SINE Alu 130 145 -157 2111 89 10 3 chr4 2087898 2088191 -200240156 - AluSc SINE Alu -14 295 1 1498 166 6 110 chr4 2088191 2088380 -200239967 + AluJb SINE Alu 145 293 -9 403 92 0 0 chr4 2088601 2088666 -200239681 - L1MC3 LINE L1 0 7785 7721 1840 149 24 24 chr4 2088666 2088995 -200239352 - MER44D DNA MER2_type 0 609 11 846 181 99 45 chr4 2089020 2089241 -200239106 - L1MD3 LINE L1 -67 7928 7696 2189 92 0 7 chr4 2089358 2089652 -200238695 + AluSc SINE Alu 1 292 -17 1937 136 13 7 chr4 2089678 2089988 -200238359 + AluSx SINE Alu 1 312 0 1086 216 7 33 chr4 2090103 2090376 -200237971 - AluJo SINE Alu -46 266 1 1862 143 10 3 chr4 2090405 2090706 -200237641 + AluSx SINE Alu 1 303 -9 287 234 9 56 chr4 2090890 2090997 -200237350 - MIR3 SINE MIR -1 207 106 876 222 0 0 chr4 2091119 2091281 -200237066 - AluJ SINE Alu -4 298 137 2058 92 58 3 chr4 2091634 2091929 -200236418 - AluSq SINE Alu -2 311 1 809 140 0 37 chr4 2092503 2092639 -200235708 - AluJ SINE Alu -181 131 1 1843 147 3 7 chr4 2092869 2093169 -200235178 - AluSx SINE Alu -13 299 1 2247 95 0 0 chr4 2093180 2093484 -200234863 - AluSx SINE Alu -8 304 1 281 310 14 0 chr4 2093734 2093805 -200234542 + MIR3 SINE MIR 114 185 -23 1573 160 11 14 chr4 2093853 2094135 -200234212 + AluJo SINE Alu 1 281 -31 2133 106 3 0 chr4 2094311 2094614 -200233733 - AluSg SINE Alu -5 305 2 2351 88 0 0 chr4 2094622 2094930 -200233417 - AluSg SINE Alu -2 308 1 646 169 113 8 chr4 2095111 2095235 -200233112 + FLAM_C SINE Alu 3 139 -4 1210 238 127 19 chr4 2095259 2095670 -200232677 + Charlie7 DNA MER1_type 409 863 -1749 1608 148 34 17 chr4 2095780 2096071 -200232276 - AluJb SINE Alu -16 296 1 3151 203 116 93 chr4 2096310 2096484 -200231863 + Charlie7 DNA MER1_type 926 1095 -1517 1399 144 59 46 chr4 2096484 2096789 -200231558 - AluJo SINE Alu -3 309 1 3151 203 116 93 chr4 2096789 2096943 -200231404 + Charlie7 DNA MER1_type 1095 1244 -1368 2051 114 7 10 chr4 2096943 2097249 -200231098 - AluSc SINE Alu -4 305 1 3151 203 116 93 chr4 2097249 2097745 -200230602 + Charlie7 DNA MER1_type 1244 1727 -885 2308 75 0 0 chr4 2097745 2098040 -200230307 - AluY SINE Alu -16 295 1 3151 203 116 93 chr4 2098040 2098101 -200230246 + Charlie7 DNA MER1_type 1727 1785 -827 2076 103 10 3 chr4 2098101 2098393 -200229954 + AluSx SINE Alu 1 294 -18 3151 203 116 93 chr4 2098393 2098626 -200229721 + Charlie7 DNA MER1_type 1785 2011 -601 2414 51 0 29 chr4 2098626 2098941 -200229406 - AluY SINE Alu -5 306 1 3151 203 116 93 chr4 2098941 2099359 -200228988 + Charlie7 DNA MER1_type 2011 2501 -111 873 184 13 0 chr4 2100067 2100225 -200228122 + FRAM SINE Alu 1 160 -16 1886 127 37 3 chr4 2100661 2100961 -200227386 - AluSx SINE Alu -2 310 1 1574 156 10 27 chr4 2101204 2101499 -200226848 - AluJo SINE Alu -22 290 1 784 157 0 0 chr4 2103241 2103362 -200224985 - AluSg/x SINE Alu -18 294 174 1572 184 10 16 chr4 2103544 2103854 -200224493 - AluJb SINE Alu -2 310 3 1871 170 89 6 chr4 2103854 2104201 -200224146 + MSTB1 LTR MaLR 57 432 0 510 319 42 78 chr4 2104225 2104314 -200224033 + L1M4 LINE L1 4651 4742 -1404 1727 170 3 3 chr4 2104314 2104608 -200223739 + AluJo SINE Alu 1 294 -18 510 319 42 78 chr4 2104608 2104904 -200223443 + L1M4 LINE L1 4742 5022 -1124 1046 204 25 4 chr4 2105374 2105609 -200222738 + AluSx SINE Alu 61 300 -12 1378 130 51 16 chr4 2105609 2105862 -200222485 + L1MA5 LINE L1 6037 6298 -2 2209 78 0 7 chr4 2105921 2106214 -200222133 + AluSc SINE Alu 1 291 -18 664 165 51 173 chr4 2106214 2106468 -200221879 - L1ME LINE L1 -347 5819 5597 2000 109 3 7 chr4 2106470 2106754 -200221593 - AluSg SINE Alu -14 296 14 2259 76 3 3 chr4 2106754 2107055 -200221292 - AluY SINE Alu -10 301 1 1749 155 7 17 chr4 2107059 2107356 -200220991 - AluJb SINE Alu -7 305 12 603 199 99 53 chr4 2107369 2107651 -200220696 - L1ME LINE L1 -1446 4700 4406 400 305 104 11 chr4 2107908 2108187 -200220160 - L2 LINE L2 -466 2848 2544 2050 96 4 4 chr4 2108484 2108765 -200219582 + AluSx SINE Alu 1 281 -31 195 42 0 0 chr4 2108769 2108793 -200219554 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 301 250 21 31 chr4 2108793 2108875 -200219472 + L1M4 LINE L1 3793 3875 -2271 1517 187 3 23 chr4 2108875 2109174 -200219173 + AluSx SINE Alu 1 293 -19 301 250 21 31 chr4 2109174 2109187 -200219160 + L1M4 LINE L1 3875 3887 -2259 2009 84 7 7 chr4 2109893 2110168 -200218179 - AluSx SINE Alu -12 300 26 281 26 26 0 chr4 2110186 2110224 -200218123 + (TTA)n Simple_repeat Simple_repeat 2 40 0 1670 143 0 38 chr4 2110231 2110389 -200217958 - AluJo SINE Alu -36 276 132 2316 68 0 7 chr4 2110389 2110685 -200217662 + AluY SINE Alu 1 294 -17 1670 143 0 38 chr4 2110685 2110813 -200217534 - AluJo SINE Alu -180 132 1 2717 10 3 3 chr4 2110837 2111148 -200217199 + AluYa5 SINE Alu 1 311 0 764 69 20 0 chr4 2111157 2111259 -200217088 + AluSq/x SINE Alu 1 104 -209 2017 97 20 20 chr4 2111455 2111755 -200216592 + AluSq SINE Alu 1 300 -13 263 224 40 13 chr4 2111862 2111938 -200216409 - MLT1K LTR MaLR -63 525 448 1364 187 128 8 chr4 2112332 2112774 -200215573 + MLT1H LTR MaLR 1 541 -8 1858 112 62 0 chr4 2113277 2113553 -200214794 - AluSq SINE Alu -20 293 1 1284 189 4 60 chr4 2113554 2113742 -200214605 - AluJo SINE Alu -13 299 131 2288 59 3 3 chr4 2113742 2114029 -200214318 + AluY SINE Alu 15 301 -10 1284 189 4 60 chr4 2114029 2114121 -200214226 - AluJo SINE Alu -181 131 35 275 273 20 40 chr4 2114973 2115123 -200213224 - L2 LINE L2 -212 3060 2914 1738 104 8 8 chr4 2115326 2115576 -200212771 + AluSg SINE Alu 55 304 -6 26 30 0 0 chr4 2115635 2115668 -200212679 + AT_rich Low_complexity Low_complexity 1 33 0 208 106 21 43 chr4 2115845 2115892 -200212455 + (CCCG)n Simple_repeat Simple_repeat 2 47 0 229 195 37 24 chr4 2116430 2116512 -200211835 + Zaphod DNA AcHobo 9 91 -3940 1894 105 22 0 chr4 2117122 2117399 -200210948 + AluSp SINE Alu 13 295 -18 2166 92 0 19 chr4 2117399 2117716 -200210631 + AluY SINE Alu 1 311 0 1797 99 106 4 chr4 2117730 2118003 -200210344 + AluSx SINE Alu 1 301 -11 618 174 31 68 chr4 2118003 2118164 -200210183 + L1MA5 LINE L1 5756 5910 -390 1954 105 3 14 chr4 2118171 2118467 -200209880 - AluSg SINE Alu 0 310 18 1397 113 32 0 chr4 2118620 2118841 -200209506 - AluSq SINE Alu -85 228 1 1617 91 0 13 chr4 2118843 2119022 -200209325 - AluY SINE Alu -1 310 133 2326 38 3 14 chr4 2119022 2119332 -200209015 - AluY SINE Alu 0 311 1 1617 91 0 13 chr4 2119332 2119383 -200208964 - AluY SINE Alu -178 133 83 2013 110 0 60 chr4 2119385 2119703 -200208644 - AluSq SINE Alu -14 299 1 1307 187 56 21 chr4 2119813 2120097 -200208250 + AluJo SINE Alu 1 294 -18 438 300 8 8 chr4 2120155 2120275 -200208072 + FLAM_A SINE Alu 5 124 -9 1956 129 3 13 chr4 2120327 2120636 -200207711 + AluSg SINE Alu 1 306 -4 2263 60 30 13 chr4 2121026 2121327 -200207020 + AluSx SINE Alu 1 306 -6 429 103 0 0 chr4 2122336 2122394 -200205953 - AluJ/FLAM SINE Alu -253 59 2 292 162 88 0 chr4 2122760 2122828 -200205519 + Tigger5 DNA MER2_type 2250 2323 0 188 355 81 17 chr4 2123051 2123223 -200205124 + L2 LINE L2 2569 2751 -563 185 289 289 0 chr4 2124005 2124095 -200204252 - L2 LINE L2 0 3313 3198 197 294 128 0 chr4 2124116 2124218 -200204129 - L2 LINE L2 -875 2439 2325 533 275 54 45 chr4 2124277 2124499 -200203848 + MIR SINE MIR 7 230 -32 1382 184 0 44 chr4 2125414 2125539 -200202808 - AluJb SINE Alu -53 259 130 2126 115 0 7 chr4 2125539 2125844 -200202503 - AluSx SINE Alu -1 311 9 1382 184 0 44 chr4 2125844 2125989 -200202358 - AluJb SINE Alu -182 130 1 1956 97 39 4 chr4 2126447 2126749 -200201598 + AluSx SINE Alu 1 312 0 505 248 81 6 chr4 2126880 2127041 -200201306 - MIR SINE MIR -6 256 84 2059 105 26 10 chr4 2127076 2127380 -200200967 - AluSq SINE Alu -4 309 1 227 237 96 25 chr4 2127722 2127858 -200200489 + MER5A DNA MER1_type 1 188 -1 1230 171 93 8 chr4 2129088 2129345 -200199002 + AluJo SINE Alu 1 279 -33 777 153 15 0 chr4 2129504 2129635 -200198712 - AluSg/x SINE Alu -12 298 166 285 268 89 18 chr4 2133439 2133551 -200194796 - MLT1K LTR MaLR -2 586 467 305 282 39 0 chr4 2133628 2133706 -200194641 - MLT1K LTR MaLR -342 246 166 319 334 112 25 chr4 2133813 2134044 -200194303 + L2 LINE L2 2973 3239 -74 2045 127 10 0 chr4 2134044 2134377 -200193970 - AluSx SINE Alu 0 312 1 319 334 112 25 chr4 2134377 2134459 -200193888 + L2 LINE L2 3239 3313 0 635 215 6 0 chr4 2134459 2134631 -200193716 + (TGGA)n Simple_repeat Simple_repeat 2 174 0 790 206 6 1 chr4 2134656 2135357 -200192990 + (TGGA)n Simple_repeat Simple_repeat 1 704 0 972 198 9 5 chr4 2135390 2135836 -200192511 + (TGGA)n Simple_repeat Simple_repeat 1 448 0 372 295 94 18 chr4 2136217 2136441 -200191906 - L2 LINE L2 -229 3084 2844 286 273 161 14 chr4 2136533 2136819 -200191528 - L2 LINE L2 -739 2575 2248 205 188 0 42 chr4 2137488 2137536 -200190811 + G-rich Low_complexity Low_complexity 6 51 0 699 181 24 0 chr4 2138569 2138696 -200189651 + Tigger1 DNA MER2_type 2079 2208 -210 1030 172 17 67 chr4 2138696 2138859 -200189488 - AluJo SINE Alu -13 299 129 207 0 0 0 chr4 2138859 2138882 -200189465 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2194 78 0 0 chr4 2138882 2139165 -200189182 - AluY SINE Alu -28 283 1 1030 172 17 67 chr4 2139165 2139238 -200189109 - AluJo SINE Alu -181 131 74 425 245 86 15 chr4 2139292 2139446 -200188901 - MIR SINE MIR -83 179 16 2064 106 13 3 chr4 2139915 2140217 -200188130 - AluSg SINE Alu -5 305 1 537 176 0 42 chr4 2140224 2140343 -200188004 - FAM SINE Alu 0 185 72 327 256 34 0 chr4 2140343 2140373 -200187974 - AluJo/F(R)AM SINE Alu -78 224 196 1640 128 0 0 chr4 2140373 2140608 -200187739 - AluSx SINE Alu -77 235 1 327 256 34 0 chr4 2140608 2140678 -200187669 - AluJo/F(R)AM SINE Alu -106 196 154 2135 112 52 60 chr4 2140678 2140831 -200187516 + THE1B LTR MaLR 1 154 -210 1983 139 3 0 chr4 2140831 2141125 -200187222 + AluSg SINE Alu 1 295 -15 2135 112 52 60 chr4 2141125 2141338 -200187009 + THE1B LTR MaLR 154 364 0 12005 89 9 6 chr4 2141338 2142914 -200185433 + THE1B-int LTR MaLR 1 1580 0 2317 92 66 20 chr4 2142914 2143262 -200185085 + THE1B LTR MaLR 1 364 0 1582 120 14 58 chr4 2143491 2143766 -200184581 - AluJb SINE Alu -49 263 1 2092 121 0 0 chr4 2143793 2144082 -200184265 - AluSx SINE Alu -9 303 15 1362 139 0 9 chr4 2145233 2145449 -200182898 - AluJb SINE Alu -14 298 85 360 335 54 6 chr4 2146592 2146759 -200181588 + L2 LINE L2 3139 3313 0 213 211 57 0 chr4 2146844 2146908 -200181439 - MIR SINE MIR -69 139 70 2035 128 0 0 chr4 2147048 2147336 -200181011 + AluSx SINE Alu 4 291 -21 2002 111 26 7 chr4 2147343 2147650 -200180697 - AluSq SINE Alu 0 313 1 976 103 109 0 chr4 2147650 2147824 -200180523 + Tigger3(Golem) DNA MER2_type 2765 2957 -72 2148 86 0 10 chr4 2147928 2148220 -200180127 - AluSp SINE Alu -11 302 14 9541 116 57 124 chr4 2148224 2148574 -200179773 - Tigger1 DNA MER2_type -318 2100 1728 2107 94 0 29 chr4 2148574 2148881 -200179466 - AluSc SINE Alu -11 298 1 1520 126 0 37 chr4 2148882 2149128 -200179219 - AluSx SINE Alu -18 294 58 9541 116 57 124 chr4 2149128 2149153 -200179194 - Tigger1 DNA MER2_type -690 1728 1703 1816 103 17 17 chr4 2149153 2149443 -200178904 - AluSg1 SINE Alu -19 290 1 9541 116 57 124 chr4 2149443 2149581 -200178766 - Tigger1 DNA MER2_type -715 1703 1557 1980 115 7 7 chr4 2149581 2149867 -200178480 - AluSx SINE Alu -19 293 8 9541 116 57 124 chr4 2149867 2149913 -200178434 - Tigger1 DNA MER2_type -861 1557 1509 2273 80 3 0 chr4 2149913 2150212 -200178135 - AluY SINE Alu -9 302 3 9541 116 57 124 chr4 2150212 2150354 -200177993 - Tigger1 DNA MER2_type -909 1509 1359 793 128 0 94 chr4 2150354 2150503 -200177844 - FLAM_C SINE Alu -7 136 2 9541 116 57 124 chr4 2150503 2151707 -200176640 - Tigger1 DNA MER2_type -1059 1359 199 2159 115 0 3 chr4 2151707 2152011 -200176336 + AluSx SINE Alu 1 303 -9 9541 116 57 124 chr4 2152011 2152175 -200176172 - Tigger1 DNA MER2_type -2219 199 26 185 182 164 0 chr4 2152224 2152279 -200176068 + L2 LINE L2 3232 3295 -18 386 267 80 13 chr4 2152310 2152460 -200175887 + MER106B DNA MER1_type 896 1055 -4 363 235 0 24 chr4 2152702 2152787 -200175560 + MIR SINE MIR 50 132 -76 1863 80 0 20 chr4 2154791 2155041 -200173306 - AluSq SINE Alu -68 245 1 2447 31 0 28 chr4 2155240 2155558 -200172789 - AluY SINE Alu 0 310 1 1779 166 0 35 chr4 2155558 2155872 -200172475 - AluJb SINE Alu -9 303 1 1573 171 27 40 chr4 2156166 2156464 -200171883 + AluJb SINE Alu 1 294 -18 1376 147 9 0 chr4 2156609 2156820 -200171527 + AluJo SINE Alu 86 298 -14 209 162 54 0 chr4 2156965 2157002 -200171345 + MER5A DNA MER1_type 64 102 -87 1170 153 16 0 chr4 2158000 2158190 -200170157 - AluJb SINE Alu 0 312 120 2176 82 43 4 chr4 2159162 2159442 -200168905 + AluSc SINE Alu 14 304 -5 362 306 94 25 chr4 2159452 2159687 -200168660 + L1MC4 LINE L1 7699 7949 -93 298 211 0 0 chr4 2161702 2161754 -200166593 + MLT1C LTR MaLR 416 467 0 309 277 10 10 chr4 2161796 2161897 -200166450 + L1MC3 LINE L1 7683 7783 -2 240 294 44 50 chr4 2162161 2162311 -200166036 + MIR SINE MIR 18 166 -62 1875 151 34 0 chr4 2162927 2163219 -200165128 + AluJo SINE Alu 1 302 -10 2392 85 3 0 chr4 2163351 2163646 -200164701 + AluSp SINE Alu 1 296 -17 846 160 0 0 chr4 2163650 2163775 -200164572 - FLAM_C SINE Alu -18 125 1 822 177 15 0 chr4 2163837 2163967 -200164380 + AluSq/x SINE Alu 1 132 -180 305 375 59 8 chr4 2164013 2164269 -200164078 + L1MC4 LINE L1 6768 7036 -1006 1909 139 42 0 chr4 2164466 2164632 -200163715 - AluSx SINE Alu -13 299 115 210 37 0 0 chr4 2164632 2164659 -200163688 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1909 139 42 0 chr4 2164659 2164779 -200163568 - AluSx SINE Alu -197 115 1 355 261 68 72 chr4 2164806 2164970 -200163377 + L1MC4a LINE L1 5117 5280 -866 1569 183 73 0 chr4 2164970 2165244 -200163103 + AluJb SINE Alu 1 294 -18 2237 136 0 0 chr4 2165248 2165558 -200162789 + AluSx SINE Alu 1 310 -2 355 261 68 72 chr4 2165558 2165595 -200162752 + L1MC4a LINE L1 5283 5322 -824 862 114 46 51 chr4 2165610 2165733 -200162614 + L1MA8 LINE L1 6116 6239 -52 2207 111 0 33 chr4 2165733 2165869 -200162478 + AluSx SINE Alu 1 140 -172 2179 127 0 16 chr4 2165869 2166183 -200162164 + AluSg1 SINE Alu 1 309 0 2207 111 0 33 chr4 2166183 2166353 -200161994 + AluSx SINE Alu 140 297 -15 862 114 46 51 chr4 2166353 2166404 -200161943 + L1MA8 LINE L1 6239 6289 -2 691 284 34 30 chr4 2166445 2166741 -200161606 + L1MC4a LINE L1 5303 5599 -2209 260 249 184 40 chr4 2166891 2167087 -200161260 + L1MC4a LINE L1 5914 6163 -1645 2146 138 7 0 chr4 2167087 2167391 -200160956 - AluJb SINE Alu -6 306 1 260 249 184 40 chr4 2167391 2167471 -200160876 + L1MC4a LINE L1 6163 6230 -1578 331 176 71 188 chr4 2167838 2167940 -200160407 + L1ME3A LINE L1 5053 5165 -981 2134 122 3 3 chr4 2167940 2168235 -200160112 - AluSp SINE Alu -18 295 1 331 176 71 188 chr4 2168235 2168255 -200160092 + L1ME3A LINE L1 5165 5153 -993 2026 134 0 10 chr4 2168255 2168553 -200159794 - AluSx SINE Alu -17 295 1 331 176 71 188 chr4 2168553 2168599 -200159748 + L1ME3A LINE L1 5152 5202 -944 1151 274 114 34 chr4 2168627 2169244 -200159103 + L1ME3A LINE L1 5290 5985 -185 2417 94 3 0 chr4 2169244 2169551 -200158796 - AluSc SINE Alu -1 308 1 1151 274 114 34 chr4 2169551 2169724 -200158623 + L1ME3A LINE L1 5985 6143 -27 1311 99 6 0 chr4 2169754 2169926 -200158421 - AluSg/x SINE Alu -14 296 124 931 234 80 7 chr4 2169966 2170252 -200158095 + L1M4 LINE L1 4872 5178 -968 314 328 133 9 chr4 2170274 2170597 -200157750 + L1MCc LINE L1 -485 4294967173 -6031 253 291 53 82 chr4 2170843 2170922 -200157425 + L1MCc LINE L1 295 375 -5533 2081 116 19 35 chr4 2170922 2171232 -200157115 + AluSq SINE Alu 1 305 -8 253 291 53 82 chr4 2171232 2171358 -200156989 + L1MCc LINE L1 375 494 -5414 352 223 142 7 chr4 2171504 2171652 -200156695 + L1MCc LINE L1 1306 1465 -4961 194 159 45 0 chr4 2171706 2171750 -200156597 + GA-rich Low_complexity Low_complexity 3 48 0 1496 158 85 12 chr4 2171774 2172033 -200156314 + AluJo SINE Alu 14 291 -21 533 291 46 37 chr4 2172048 2172243 -200156104 + L1MCc LINE L1 1654 1846 -4761 2099 110 9 31 chr4 2172243 2172561 -200155786 + AluY SINE Alu 1 311 0 533 291 46 37 chr4 2172561 2172641 -200155706 + L1MCc LINE L1 1846 1924 -4683 2114 123 13 7 chr4 2172641 2172950 -200155397 + AluSx SINE Alu 1 311 -1 533 291 46 37 chr4 2172950 2173023 -200155324 + L1MCc LINE L1 1924 2006 -4601 2431 54 3 3 chr4 2173041 2173335 -200155012 - AluY SINE Alu -4 307 14 1708 171 17 38 chr4 2173359 2173703 -200154644 - MSTB LTR MaLR -49 377 41 4491 101 14 75 chr4 2173703 2174462 -200153885 - L1PA12 LINE L1 -9 6159 5447 1896 181 0 3 chr4 2174476 2174779 -200153568 - AluJb SINE Alu -10 302 1 1356 69 0 29 chr4 2174808 2174983 -200153364 - AluSx SINE Alu -142 170 1 733 149 0 41 chr4 2175034 2175155 -200153192 + FLAM_C SINE Alu 2 117 -26 452 108 0 0 chr4 2175159 2175224 -200153123 + AluJ/FRAM SINE Alu 230 294 -8 * 2044 123 131 44 chr4 2175219 2175625 -200152722 + Tigger2 DNA MER2_type 2278 2718 0 487 283 26 58 chr4 2175655 2175846 -200152501 + MIR SINE MIR 75 259 -3 815 174 84 7 chr4 2175968 2176123 -200152224 + AluJb SINE Alu 140 306 -6 319 297 14 0 chr4 2176187 2176261 -200152086 + L2 LINE L2 3198 3272 0 2227 133 0 0 chr4 2176477 2176785 -200151562 + AluSx SINE Alu 1 308 -4 297 95 0 0 chr4 2176998 2177040 -200151307 + Alu SINE Alu 254 295 -6 372 311 45 8 chr4 2177340 2177472 -200150875 + MIR SINE MIR 92 228 -34 346 230 0 58 chr4 2177530 2177617 -200150730 + AluSg/x SINE Alu 136 217 -83 824 204 14 0 chr4 2177631 2177778 -200150569 - FAM SINE Alu -36 149 1 2080 106 0 11 chr4 2177801 2178107 -200150240 + AluSg SINE Alu 3 305 0 2383 90 3 0 chr4 2178432 2178731 -200149616 + AluSx SINE Alu 2 301 -11 26 64 0 0 chr4 2179389 2179436 -200148911 + AT_rich Low_complexity Low_complexity 1 47 0 294 315 207 9 chr4 2179566 2179779 -200148568 + L2 LINE L2 2109 2363 -951 599 275 174 12 chr4 2180030 2180407 -200147940 + L2 LINE L2 2628 3060 -253 1571 97 14 0 chr4 2180945 2181152 -200147195 - AluSc SINE Alu -91 218 9 2100 93 0 83 chr4 2181250 2181434 -200146913 - AluSx SINE Alu -15 297 150 2073 125 31 0 chr4 2181434 2181721 -200146626 - AluSg SINE Alu -14 296 1 2100 93 0 83 chr4 2181721 2181860 -200146487 - AluSx SINE Alu -162 150 1 2080 126 3 7 chr4 2182500 2182801 -200145546 - AluSc SINE Alu -9 300 1 782 148 0 87 chr4 2182833 2182982 -200145365 + AluJb SINE Alu 4 139 -173 2123 122 3 40 chr4 2182990 2183311 -200145036 + AluSq SINE Alu 1 309 -4 1378 219 7 49 chr4 2183698 2183836 -200144511 + AluJo SINE Alu 6 148 -164 2268 94 0 10 chr4 2183836 2184135 -200144212 + AluSg SINE Alu 1 296 -14 1378 219 7 49 chr4 2184135 2184302 -200144045 + AluJo SINE Alu 148 298 -14 2421 79 7 0 chr4 2184403 2184706 -200143641 - AluSx SINE Alu -7 305 1 677 246 102 29 chr4 2184734 2185047 -200143300 - L1ME3A LINE L1 -273 5897 5562 1449 189 10 69 chr4 2185107 2185281 -200143066 - AluJo SINE Alu -24 288 138 2351 92 0 0 chr4 2185281 2185573 -200142774 + AluSg SINE Alu 1 292 -18 1449 189 10 69 chr4 2185573 2185704 -200142643 - AluJo SINE Alu -174 138 1 2088 201 89 99 chr4 2185715 2186370 -200141977 - L1ME1 LINE L1 -44 6122 5462 949 211 131 65 chr4 2186370 2186519 -200141828 - AluJo SINE Alu -9 293 155 1957 120 10 24 chr4 2186519 2186837 -200141510 + AluSq SINE Alu 1 314 0 949 211 131 65 chr4 2186837 2186961 -200141386 - AluJo SINE Alu -147 155 1 2088 201 89 99 chr4 2186961 2186997 -200141350 - L1ME1 LINE L1 -704 5462 5427 321 68 0 0 chr4 2186997 2187041 -200141306 + (TG)n Simple_repeat Simple_repeat 2 45 0 2040 125 4 0 chr4 2187042 2187322 -200141025 - AluSx SINE Alu -17 295 15 2088 201 89 99 chr4 2187322 2187481 -200140866 - L1ME1 LINE L1 -739 5427 5268 2331 90 7 0 chr4 2187481 2187780 -200140567 - AluSq SINE Alu -12 301 1 2088 201 89 99 chr4 2187780 2187871 -200140476 - L1ME1 LINE L1 -898 5268 5178 1998 157 3 0 chr4 2187871 2188165 -200140182 - AluSx SINE Alu -17 295 1 2088 201 89 99 chr4 2188165 2188331 -200140016 - L1ME1 LINE L1 -988 5178 5024 2092 125 6 13 chr4 2188333 2188644 -200139703 - AluSx SINE Alu -1 311 3 429 214 12 89 chr4 2188655 2188793 -200139554 - L1ME3A LINE L1 -965 5181 5057 2856 16 3 0 chr4 2188793 2189103 -200139244 - AluYa5 SINE Alu 0 311 1 429 214 12 89 chr4 2189103 2189132 -200139215 - L1ME3A LINE L1 -1089 5057 5027 2172 133 0 3 chr4 2189132 2189434 -200138913 - AluSg SINE Alu -9 301 1 1851 169 0 28 chr4 2189434 2189753 -200138594 - AluSx SINE Alu -1 311 1 466 266 38 49 chr4 2189757 2189835 -200138512 - L1ME3A LINE L1 -2274 3872 3795 2258 89 4 0 chr4 2189835 2190140 -200138207 - AluSp SINE Alu 0 309 4 2266 85 3 10 chr4 2190144 2190494 -200137853 - AluY SINE Alu 0 311 14 466 266 38 49 chr4 2190494 2190624 -200137723 - L1ME3A LINE L1 -2354 3792 3659 1281 181 17 0 chr4 2190624 2190856 -200137491 - MER46A DNA MER2_type 0 236 1 466 266 38 49 chr4 2190856 2190907 -200137440 - L1ME3A LINE L1 -2487 3659 3609 2195 227 109 66 chr4 2190922 2191236 -200137111 - L1ME3A LINE L1 -2734 3412 3113 1760 172 0 35 chr4 2191236 2191416 -200136931 - AluJo SINE Alu -2 310 144 2592 56 0 0 chr4 2191416 2191718 -200136629 - AluY SINE Alu -9 302 1 1760 172 0 35 chr4 2191718 2191856 -200136491 - AluJo SINE Alu -168 144 3 2195 227 109 66 chr4 2191856 2191941 -200136406 - L1ME3A LINE L1 -3033 3113 3033 2313 68 4 0 chr4 2191941 2192244 -200136103 - AluY SINE Alu 0 304 1 1961 151 10 3 chr4 2192251 2192555 -200135792 - AluSx SINE Alu -6 306 1 2195 227 109 66 chr4 2192555 2192591 -200135756 - L1ME3A LINE L1 -3118 3028 2995 844 208 6 24 chr4 2192591 2192759 -200135588 + FAM SINE Alu 1 165 -10 2195 227 109 66 chr4 2192759 2192781 -200135566 - L1ME3A LINE L1 -3151 2995 2975 2283 83 3 0 chr4 2192781 2193069 -200135278 - AluSc SINE Alu -4 305 17 2195 227 109 66 chr4 2193069 2193101 -200135246 - L1ME3A LINE L1 -3171 2975 2946 2029 138 51 28 chr4 2193101 2193457 -200134890 + THE1B LTR MaLR 1 364 0 2195 227 109 66 chr4 2193457 2193489 -200134858 - L1ME3A LINE L1 -3200 2946 2917 2208 113 0 3 chr4 2193489 2193790 -200134557 - AluSg SINE Alu -10 300 1 2195 227 109 66 chr4 2193790 2194392 -200133955 - L1ME3A LINE L1 -3229 2917 2226 275 173 0 19 chr4 2194739 2194791 -200133556 + Alu SINE Alu 2 52 -247 1546 172 3 107 chr4 2194904 2195015 -200133332 + AluJb SINE Alu 2 123 -179 2268 83 10 0 chr4 2195015 2195305 -200133042 - AluY SINE Alu -3 308 16 2037 115 31 0 chr4 2195313 2195600 -200132747 - AluSq SINE Alu -17 296 1 1546 172 3 107 chr4 2195600 2195615 -200132732 + AluJb SINE Alu 130 145 -157 2251 89 10 3 chr4 2195615 2195908 -200132439 - AluSc SINE Alu -14 295 1 1546 172 3 107 chr4 2195908 2196097 -200132250 + AluJb SINE Alu 145 293 -9 390 92 0 0 chr4 2196318 2196383 -200131964 - L1MC3 LINE L1 0 7785 7721 1755 149 24 24 chr4 2196383 2196712 -200131635 - MER44D DNA MER2_type 0 609 11 790 181 99 45 chr4 2196737 2196958 -200131389 - L1MD3 LINE L1 -67 7928 7696 2335 92 0 7 chr4 2197075 2197369 -200130978 + AluSc SINE Alu 1 292 -17 2091 136 13 7 chr4 2197395 2197705 -200130642 + AluSx SINE Alu 1 312 0 1189 210 5 0 chr4 2197820 2198044 -200130303 - AluJo SINE Alu -46 266 42 2042 149 7 0 chr4 2198122 2198423 -200129924 + AluSx SINE Alu 1 303 -9 289 234 9 56 chr4 2198607 2198714 -200129633 - MIR3 SINE MIR -1 207 106 894 213 0 18 chr4 2198828 2198997 -200129350 - AluJ SINE Alu 0 302 137 2201 92 58 3 chr4 2199349 2199644 -200128703 - AluSq SINE Alu -2 311 1 825 140 0 37 chr4 2200218 2200354 -200127993 - AluJ SINE Alu -181 131 1 1977 150 3 7 chr4 2200584 2200884 -200127463 - AluSx SINE Alu -13 299 1 2386 96 0 0 chr4 2200895 2201198 -200127149 - AluSx SINE Alu -9 303 1 278 310 14 0 chr4 2201448 2201519 -200126828 + MIR3 SINE MIR 114 185 -23 1707 160 11 14 chr4 2201567 2201849 -200126498 + AluJo SINE Alu 1 281 -31 2195 99 3 3 chr4 2202026 2202320 -200126027 - AluSg SINE Alu -5 305 12 2443 91 3 0 chr4 2202335 2202642 -200125705 - AluSg SINE Alu -2 308 1 669 163 114 8 chr4 2202823 2202946 -200125401 + FLAM_C SINE Alu 3 138 -5 1100 251 122 15 chr4 2202970 2203381 -200124966 + Charlie7 DNA MER1_type 409 863 -1749 1761 155 33 16 chr4 2203479 2203782 -200124565 - AluJb SINE Alu -4 308 1 1598 207 128 91 chr4 2204021 2204195 -200124152 + Charlie7 DNA MER1_type 926 1092 -1520 1571 171 30 16 chr4 2204195 2204500 -200123847 - AluJo SINE Alu -3 309 1 1598 207 128 91 chr4 2204500 2204654 -200123693 + Charlie7 DNA MER1_type 1092 1239 -1373 2190 123 7 0 chr4 2204654 2204955 -200123392 - AluSc SINE Alu -6 303 1 1598 207 128 91 chr4 2204955 2205447 -200122900 + Charlie7 DNA MER1_type 1239 1777 -835 2440 69 0 26 chr4 2205451 2205754 -200122593 - AluY SINE Alu -16 295 1 2230 84 0 4 chr4 2205754 2206029 -200122318 - AluSg SINE Alu -10 300 27 * 2372 103 7 3 chr4 2206028 2206338 -200122009 - AluY SINE Alu 0 311 1 1107 205 47 79 chr4 2206338 2206391 -200121956 + L1 LINE L1 3535 3588 -2558 2145 142 0 0 chr4 2206391 2206694 -200121653 + AluSq SINE Alu 1 303 -10 2245 70 13 61 chr4 2206694 2207007 -200121340 + AluY SINE Alu 1 298 -13 1107 205 47 79 chr4 2207007 2207139 -200121208 + L1 LINE L1 3587 3722 -2424 2333 101 0 10 chr4 2207139 2207435 -200120912 + AluSq SINE Alu 1 293 -20 1107 205 47 79 chr4 2207435 2207564 -200120783 + L1 LINE L1 3722 3854 -2292 1912 118 0 99 chr4 2207564 2207896 -200120451 + AluSx SINE Alu 2 300 -12 1107 205 47 79 chr4 2207896 2208122 -200120225 + L1 LINE L1 3854 4242 -1904 2447 103 0 0 chr4 2208122 2208434 -200119913 + AluSx SINE Alu 1 312 0 22 35 0 0 chr4 2208489 2208518 -200119829 + AT_rich Low_complexity Low_complexity 1 29 0 707 178 49 65 chr4 2208518 2208625 -200119722 + L1 LINE L1 5195 5300 -846 2414 67 0 0 chr4 2208625 2208932 -200119415 + AluY SINE Alu 2 308 0 707 178 49 65 chr4 2208932 2209008 -200119339 + L1 LINE L1 5300 5376 -770 602 231 0 8 chr4 2209009 2209143 -200119204 + AluJb SINE Alu 171 303 -9 812 183 47 26 chr4 2209146 2209328 -200119019 + L1MB4 LINE L1 5959 6136 -47 629 206 15 0 chr4 2209328 2209459 -200118888 + AluJo/FLAM SINE Alu 1 133 -169 2033 106 4 4 chr4 2209459 2209734 -200118613 + AluSp SINE Alu 38 312 -1 1663 119 0 119 chr4 2209734 2210069 -200118278 + AluY SINE Alu 2 296 -5 2446 88 0 0 chr4 2210074 2210370 -200117977 + AluSq SINE Alu 1 296 -17 812 183 47 26 chr4 2210370 2210404 -200117943 + L1MB4 LINE L1 6139 6176 -7 2414 75 0 13 chr4 2210552 2210858 -200117489 - AluY SINE Alu -9 302 1 2616 44 0 3 chr4 2210858 2211199 -200117148 - LTR10C LTR ERV1 -251 340 1 245 293 0 0 chr4 2211613 2211671 -200116676 - MIR SINE MIR -51 211 154 2173 90 7 33 chr4 2211807 2212108 -200116239 - AluSq SINE Alu -20 293 1 2133 129 0 0 chr4 2212649 2212936 -200115411 - AluSg SINE Alu -23 287 1 2445 98 0 0 chr4 2213806 2214111 -200114236 - AluY SINE Alu -6 305 1 2192 118 3 13 chr4 2214359 2214664 -200113683 - AluSx SINE Alu -10 302 1 23 0 0 0 chr4 2214782 2214805 -200113542 + AT_rich Low_complexity Low_complexity 1 23 0 865 180 180 5 chr4 2214890 2215084 -200113263 + AluSg/x SINE Alu 69 296 -13 2339 92 0 0 chr4 2215093 2215386 -200112961 + AluSx SINE Alu 1 293 -19 2085 111 57 3 chr4 2215457 2215754 -200112593 - AluSp SINE Alu 0 313 1 21 0 0 0 chr4 2215764 2215785 -200112562 + AT_rich Low_complexity Low_complexity 1 21 0 2414 88 0 10 chr4 2216053 2216359 -200111988 + AluSg1 SINE Alu 1 303 -6 265 297 148 33 chr4 2217261 2217443 -200110904 + MIR SINE MIR 53 255 -7 2253 93 41 0 chr4 2218584 2218875 -200109472 + AluSg SINE Alu 1 303 -7 1370 104 0 0 chr4 2218875 2219048 -200109299 + AluSg/x SINE Alu 134 306 -6 1546 163 3 83 chr4 2219048 2219348 -200108999 - AluJo SINE Alu -30 282 7 205 307 110 24 chr4 2219617 2219744 -200108603 + MIR3 SINE MIR 30 167 -41 669 161 0 8 chr4 2220132 2220250 -200108097 + FLAM_A SINE Alu 18 134 -8 515 205 214 12 chr4 2220396 2220694 -200107653 - L1ME LINE L1 -511 5659 5327 1187 99 0 0 chr4 2220704 2220898 -200107449 - AluY SINE Alu 0 325 132 2339 101 3 16 chr4 2220898 2221214 -200107133 - AluSx SINE Alu 0 312 1 2564 64 0 0 chr4 2221509 2221806 -200106541 - AluY SINE Alu -14 297 1 1349 122 149 9 chr4 2221905 2222127 -200106220 - AluSg1 SINE Alu -4 305 53 2018 161 7 0 chr4 2222355 2222659 -200105688 - AluSx SINE Alu -6 306 1 1906 170 0 16 chr4 2222730 2223047 -200105300 - AluJb SINE Alu 0 312 1 269 109 22 0 chr4 2223365 2223411 -200104936 + GA-rich Low_complexity Low_complexity 2 48 0 1735 178 30 3 chr4 2224020 2224324 -200104023 - AluJb SINE Alu 0 312 1 2184 95 3 7 chr4 2224733 2225089 -200103258 - AluSp SINE Alu 0 355 1 2235 109 20 0 chr4 2225089 2225393 -200102954 - AluSq SINE Alu 0 313 4 2269 110 7 0 chr4 2225396 2225695 -200102652 - AluSq SINE Alu -12 301 1 227 368 74 0 chr4 2227262 2227425 -200100922 - MIR SINE MIR -18 244 70 2334 97 0 0 chr4 2233224 2233522 -200094825 - AluSx SINE Alu -14 298 1 670 178 0 15 chr4 2233550 2233685 -200094662 - FLAM_C SINE Alu 0 133 1 2327 88 3 7 chr4 2233818 2234112 -200094235 - AluSx SINE Alu -7 305 13 1324 120 43 14 chr4 2234138 2234347 -200094000 - AluSg/x SINE Alu -2 308 94 320 260 81 16 chr4 2234348 2234471 -200093876 - L1 LINE L1 -2190 3956 3826 2140 136 0 10 chr4 2234481 2234791 -200093556 - AluSg SINE Alu -3 307 1 1537 155 200 70 chr4 2234820 2235011 -200093336 - Tigger3b DNA MER2_type -2481 547 382 1477 189 71 27 chr4 2235011 2235308 -200093039 - AluJb SINE Alu -2 310 1 1537 155 200 70 chr4 2235308 2235354 -200092993 - Tigger3b DNA MER2_type -2646 382 343 2312 103 0 25 chr4 2235354 2235674 -200092673 + AluSq SINE Alu 1 312 -1 1537 155 200 70 chr4 2235674 2235919 -200092428 - Tigger3b DNA MER2_type -2685 343 1 223 25 50 25 chr4 2235997 2236037 -200092310 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 1382 109 0 0 chr4 2236044 2236219 -200092128 - AluSq SINE Alu -138 175 1 740 118 97 28 chr4 2236226 2236370 -200091977 - Tigger7 DNA MER2_type -27 2460 2307 2344 96 3 0 chr4 2236385 2236678 -200091669 - AluSg SINE Alu -15 295 2 489 148 0 0 chr4 2236700 2236781 -200091566 - FLAM SINE Alu -10 133 53 381 234 169 39 chr4 2236868 2236983 -200091364 - L1ME3A LINE L1 -300 5870 5771 2955 7 0 0 chr4 2236983 2237292 -200091055 + AluYb8 SINE Alu 1 309 -9 381 234 169 39 chr4 2237292 2237407 -200090940 - L1ME3A LINE L1 -399 5771 5610 * 757 231 77 10 chr4 2237406 2237603 -200090744 + L1 LINE L1 2831 3056 -3090 2536 55 0 3 chr4 2237603 2237896 -200090451 + AluY SINE Alu 1 292 -19 757 231 77 10 chr4 2237896 2237997 -200090350 + L1 LINE L1 3056 3149 -2997 2120 125 0 0 chr4 2237998 2238279 -200090068 + AluSx SINE Alu 1 281 -31 2425 99 0 0 chr4 2238294 2238596 -200089751 + AluSx SINE Alu 1 302 -10 2275 103 3 10 chr4 2238602 2238912 -200089435 + AluSp SINE Alu 6 313 0 2119 123 7 0 chr4 2238921 2239221 -200089126 + AluY SINE Alu 2 303 -8 451 228 106 7 chr4 2239224 2239443 -200088904 + L1 LINE L1 3299 3539 -2607 453 32 0 16 chr4 2239543 2239605 -200088742 - AluY SINE Alu -248 62 2 296 363 90 22 chr4 2239703 2240069 -200088278 - HAL1 LINE L1 -741 1766 1376 1327 174 45 74 chr4 2240080 2240342 -200088005 - MER7A DNA MER2_type -2705 333 82 2169 131 0 3 chr4 2240342 2240640 -200087707 + AluSx SINE Alu 1 297 -15 1327 174 45 74 chr4 2240640 2240687 -200087660 - MER7A DNA MER2_type -2956 82 35 325 263 64 55 chr4 2240713 2240896 -200087451 - L1MEd LINE L1 -1165 1325 1104 476 274 101 55 chr4 2241711 2242076 -200086271 - Charlie2 DNA MER1_type -77 2785 2404 1443 152 0 0 chr4 2242080 2242290 -200086057 - AluSg/x SINE Alu -20 292 83 1025 273 66 62 chr4 2242290 2242822 -200085525 - Charlie2 DNA MER1_type -443 2419 1886 2384 97 17 3 chr4 2242860 2243210 -200085137 + THE1A LTR MaLR 1 355 0 11913 74 4 10 chr4 2243210 2243686 -200084661 + THE1A-int LTR MaLR 1 478 -1102 2211 138 0 0 chr4 2243686 2243991 -200084356 - AluSx SINE Alu -7 305 1 11913 74 4 10 chr4 2243991 2245032 -200083315 + THE1A-int LTR MaLR 478 1511 -69 2505 93 6 0 chr4 2245032 2245385 -200082962 - THE1A LTR MaLR 0 355 1 11913 74 4 10 chr4 2245385 2245455 -200082892 + THE1A-int LTR MaLR 1511 1580 0 2228 107 11 22 chr4 2245457 2245813 -200082534 + THE1A LTR MaLR 3 354 -1 271 324 14 0 chr4 2246007 2246081 -200082266 - Charlie2b DNA MER1_type -2029 753 679 1250 198 124 41 chr4 2248410 2248485 -200079862 + MSTC LTR MaLR 2 69 -359 2071 127 0 0 chr4 2248485 2248777 -200079570 + AluSx SINE Alu 1 292 -20 1250 198 124 41 chr4 2248777 2249095 -200079252 + MSTC LTR MaLR 69 428 0 26 0 0 0 chr4 2249339 2249365 -200078982 + GC_rich Low_complexity Low_complexity 1 26 0 913 244 121 37 chr4 2252255 2252686 -200075661 + MLT1C LTR MaLR 1 467 0 305 314 0 12 chr4 2253621 2253707 -200074640 - L1MEc LINE L1 -4437 1959 1875 1393 94 0 62 chr4 2253740 2253754 -200074593 - AluSg/x SINE Alu 0 310 297 1331 167 27 0 chr4 2253754 2254012 -200074335 - L1MB3 LINE L1 0 6183 5919 1393 94 0 62 chr4 2254012 2254221 -200074126 - AluSg/x SINE Alu -13 297 101 1544 128 4 0 chr4 2254228 2254454 -200073893 + AluSg/x SINE Alu 67 293 -17 303 240 21 0 chr4 2255893 2255989 -200072358 - L1ME3A LINE L1 -220 5950 5853 1697 245 46 40 chr4 2256126 2256628 -200071719 - MLT1D LTR MaLR 0 505 1 206 239 0 0 chr4 2257115 2257161 -200071186 + L2 LINE L2 3208 3253 -19 351 233 33 0 chr4 2258157 2258247 -200070100 - MER20 DNA MER1_type -5 214 122 455 271 12 66 chr4 2258518 2258684 -200069663 - L2 LINE L2 -541 2773 2617 1715 189 51 33 chr4 2258756 2258841 -200069506 - L1MB3 LINE L1 -7 6176 6094 2124 95 20 20 chr4 2258841 2259145 -200069202 + AluSx SINE Alu 1 304 -8 1715 189 51 33 chr4 2259145 2259234 -200069113 - L1MB3 LINE L1 -89 6094 5699 557 336 93 3 chr4 2259234 2259523 -200068824 - L1MD1 LINE L1 -241 6001 5687 343 338 146 12 chr4 2259523 2259866 -200068481 - L2 LINE L2 -770 2544 2156 295 323 158 29 chr4 2259902 2260218 -200068129 - L2 LINE L2 -1406 1908 1552 233 300 25 0 chr4 2260960 2261040 -200067307 + MLT1H LTR MaLR 80 161 -388 269 322 96 9 chr4 2261103 2261218 -200067129 + L2 LINE L2 3185 3309 -4 3142 86 35 5 chr4 2262140 2262571 -200065776 - MLT2A1 LTR ERVL 0 444 1 2117 123 0 13 chr4 2265305 2265614 -200062733 + AluSq SINE Alu 1 305 -8 1668 228 69 61 chr4 2265617 2265658 -200062689 + L1MB5 LINE L1 5564 5603 -571 2225 68 41 7 chr4 2265658 2265953 -200062394 + AluY SINE Alu 1 305 -6 1668 228 69 61 chr4 2265953 2266504 -200061843 + L1MB5 LINE L1 5603 6161 -13 1025 152 0 39 chr4 2266517 2266695 -200061652 - FRAM SINE Alu -7 169 1 2282 106 3 3 chr4 2267428 2267740 -200060607 + AluSx SINE Alu 1 312 0 2213 116 0 0 chr4 2267752 2268053 -200060294 + AluSx SINE Alu 1 301 -11 367 369 83 23 chr4 2268233 2268612 -200059735 - L1MDa LINE L1 -3905 2635 2316 284 319 58 21 chr4 2268837 2269028 -200059319 - HAL1 LINE L1 -794 1713 1516 1982 85 12 0 chr4 2269290 2269548 -200058799 - AluSg SINE Alu -49 261 1 300 286 51 46 chr4 2269934 2270124 -200058223 + MLT1H LTR MaLR 35 239 -356 379 254 70 7 chr4 2270571 2270713 -200057634 - L1MDa LINE L1 -5926 604 454 1944 184 19 73 chr4 2271758 2272147 -200056200 - L1MB5 LINE L1 0 6174 5819 2492 62 0 0 chr4 2272147 2272453 -200055894 - AluY SINE Alu -1 310 5 1944 184 19 73 chr4 2272453 2272586 -200055761 - L1MB5 LINE L1 -355 5819 5680 210 351 84 30 chr4 2273259 2273390 -200054957 + MIR SINE MIR 19 156 -106 305 290 57 8 chr4 2273501 2273625 -200054722 - MLT1J2 LTR MaLR -191 259 130 256 302 38 28 chr4 2274046 2274152 -200054195 - MIR SINE MIR -43 219 113 808 163 0 15 chr4 2276997 2277114 -200051233 + FLAM_C SINE Alu 1 117 -195 252 0 0 0 chr4 2277114 2277142 -200051205 + (CA)n Simple_repeat Simple_repeat 2 29 0 808 163 0 15 chr4 2277142 2277159 -200051188 + FLAM_C SINE Alu 117 133 -179 21 57 0 0 chr4 2279104 2279139 -200049208 + GC_rich Low_complexity Low_complexity 1 35 0 45 75 0 22 chr4 2280334 2280468 -200047879 + GC_rich Low_complexity Low_complexity 1 131 0 1616 271 88 18 chr4 2281442 2282113 -200046234 + L2 LINE L2 1692 2409 -905 1328 277 102 17 chr4 2282292 2282761 -200045586 - MLT1J LTR MaLR -1 510 2 2238 84 20 0 chr4 2283012 2283310 -200045037 - AluSx SINE Alu -8 304 1 1388 130 57 57 chr4 2283456 2283718 -200044629 + AluJo SINE Alu 36 297 -15 871 225 11 6 chr4 2284477 2284655 -200043692 - AluJo SINE Alu -21 291 113 180 111 0 0 chr4 2284921 2284948 -200043399 + (CACCG)n Simple_repeat Simple_repeat 3 29 0 1521 139 21 107 chr4 2285798 2286135 -200042212 + AluYb8 SINE Alu 1 308 -10 755 276 174 2 chr4 2286509 2286962 -200041385 - HAL1 LINE L1 -1136 1371 841 392 312 211 19 chr4 2289907 2290735 -200037612 + L2 LINE L2 1540 2526 -788 365 268 101 0 chr4 2290721 2290859 -200037488 + L2 LINE L2 2844 2995 -318 * 2545 61 0 0 chr4 2291242 2291552 -200036795 - AluY SINE Alu -1 310 1 299 160 35 128 chr4 2292274 2292318 -200036029 + MLT1C LTR MaLR 1 47 -432 647 197 15 38 chr4 2292318 2292450 -200035897 + FLAM_A SINE Alu 1 129 -4 1826 168 3 7 chr4 2292452 2292744 -200035603 + AluJo SINE Alu 1 291 -21 2347 68 0 3 chr4 2292748 2293042 -200035305 + AluY SINE Alu 1 293 -18 299 160 35 128 chr4 2293042 2293131 -200035216 + MLT1C LTR MaLR 51 126 -353 373 363 73 12 chr4 2293134 2293393 -200034954 - L1MC/D LINE L1 -2089 5719 5445 768 190 135 6 chr4 2293399 2293562 -200034785 - AluSg/x SINE Alu -11 299 116 602 302 61 63 chr4 2293636 2294047 -200034300 - MLT1J LTR MaLR -1 510 101 343 284 0 71 chr4 2295545 2295700 -200032647 - L2 LINE L2 -544 2770 2627 480 320 90 48 chr4 2295779 2296091 -200032256 - L2 LINE L2 -923 2391 2067 208 286 18 0 chr4 2296569 2296625 -200031722 - MIR SINE MIR -63 145 89 2201 95 3 16 chr4 2296675 2296990 -200031357 + AluSx SINE Alu 1 311 -1 1230 186 19 0 chr4 2297303 2297518 -200030829 + AluJb SINE Alu 1 219 -93 636 125 158 33 chr4 2297637 2297757 -200030590 + AluJb SINE Alu 167 301 -11 228 86 0 0 chr4 2297759 2297794 -200030553 + (TA)n Simple_repeat Simple_repeat 1 35 0 744 239 119 0 chr4 2298029 2298280 -200030067 - L1MB3 LINE L1 -8 6175 5895 2360 50 0 0 chr4 2299917 2300222 -200028125 - AluY SINE Alu 0 305 1 1043 171 0 0 chr4 2300284 2300448 -200027899 + FRAM SINE Alu 1 164 -2 512 277 50 0 chr4 2300812 2300953 -200027394 - MIR SINE MIR -70 192 45 2386 61 7 0 chr4 2301507 2301801 -200026546 - AluSx SINE Alu -16 296 1 2714 7 0 0 chr4 2301806 2302105 -200026242 - AluYa5 SINE Alu -12 299 1 641 157 0 0 chr4 2302129 2302231 -200026116 + AluJ/FLAM SINE Alu 1 102 -210 474 114 0 0 chr4 2502231 2502301 -199826046 + Alu SINE Alu 234 303 -9 1272 112 6 0 chr4 2502301 2502480 -199825867 + AluSg/x SINE Alu 118 297 -15 678 292 33 30 chr4 2502568 2502869 -199825478 + L1MC4a LINE L1 5298 5599 -2209 583 314 144 14 chr4 2503015 2503215 -199825132 + L1MC4a LINE L1 5910 6157 -1651 2061 138 7 0 chr4 2503215 2503519 -199824828 - AluJb SINE Alu -6 306 1 583 314 144 14 chr4 2503519 2503595 -199824752 + L1MC4a LINE L1 6157 6222 -1586 317 324 20 7 chr4 2504320 2504468 -199823879 + (TCCA)n Simple_repeat Simple_repeat 3 152 0 205 188 0 42 chr4 2506439 2506487 -199821860 + C-rich Low_complexity Low_complexity 6 51 0 334 273 161 14 chr4 2507156 2507442 -199820905 + L2 LINE L2 2248 2575 -739 426 304 93 20 chr4 2507535 2507782 -199820565 + L2 LINE L2 2844 3108 -205 972 186 7 3 chr4 2508141 2508587 -199819760 + (TCCA)n Simple_repeat Simple_repeat 1 627 0 790 208 6 1 chr4 2508620 2509321 -199819026 + (TCCA)n Simple_repeat Simple_repeat 1 704 0 635 215 6 0 chr4 2509346 2509518 -199818829 + (TCCA)n Simple_repeat Simple_repeat 2 174 0 352 341 112 25 chr4 2509518 2509600 -199818747 - L2 LINE L2 0 3313 3239 2080 127 10 0 chr4 2509600 2509933 -199818414 + AluSx SINE Alu 1 312 0 352 341 112 25 chr4 2509933 2510164 -199818183 - L2 LINE L2 -74 3239 2973 274 282 39 0 chr4 2510271 2510349 -199817998 + MLT1K LTR MaLR 166 246 -342 256 268 89 18 chr4 2510426 2510538 -199817809 + MLT1K LTR MaLR 467 586 -2 2078 83 4 7 chr4 2514810 2515087 -199813260 - AluSx SINE Alu -11 301 26 281 26 26 0 chr4 2515105 2515143 -199813204 + (TTA)n Simple_repeat Simple_repeat 2 40 0 1024 144 0 0 chr4 2515150 2515296 -199813051 - FRAM SINE Alu -36 140 1 21 82 0 0 chr4 2615656 2615705 -199712642 + AT_rich Low_complexity Low_complexity 1 49 0 305 233 0 14 chr4 2615745 2615818 -199712529 + MIR SINE MIR 66 137 -125 354 239 53 80 chr4 2615972 2616085 -199712262 - L2 LINE L2 -11 3302 3193 22 35 0 0 chr4 2616904 2616933 -199711414 + AT_rich Low_complexity Low_complexity 1 29 0 2466 67 0 0 chr4 2617322 2617619 -199710728 - AluY SINE Alu -14 297 1 2351 191 43 41 chr4 2617642 2617705 -199710642 - L1M4 LINE L1 -1031 5115 5054 2264 107 10 0 chr4 2617705 2618004 -199710343 + AluSg SINE Alu 1 302 -8 2351 191 43 41 chr4 2618004 2618595 -199709752 - L1M4 LINE L1 -1092 5054 4460 754 187 8 0 chr4 2618642 2618765 -199709582 + FLAM_C SINE Alu 4 127 -16 469 207 112 73 chr4 2618767 2618939 -199709408 - L1M4 LINE L1 -1718 4428 4247 2237 91 13 7 chr4 2618939 2619237 -199709110 - AluSp SINE Alu -13 300 1 1685 83 0 200 chr4 2619246 2619621 -199708726 - AluSx SINE Alu 0 302 3 1899 156 3 19 chr4 2619630 2619945 -199708402 - AluSx SINE Alu -2 310 1 344 212 106 15 chr4 2619949 2620081 -199708266 - L1MEc LINE L1 -5509 887 744 326 311 58 39 chr4 2620246 2620452 -199707895 - L2 LINE L2 -20 3293 3084 1927 102 51 17 chr4 2620521 2620815 -199707532 + AluSq SINE Alu 1 304 -9 517 245 38 43 chr4 2621112 2621296 -199707051 - LTR41 LTR ERVL -590 183 1 376 310 120 37 chr4 2621448 2621748 -199706599 - L2 LINE L2 -512 2802 2478 2147 131 0 7 chr4 2621935 2622240 -199706107 + AluJb SINE Alu 7 309 -3 1648 215 19 25 chr4 2622511 2622878 -199705469 - MLT1A1 LTR MaLR 0 365 1 2401 62 3 7 chr4 2623136 2623426 -199704921 - AluSc SINE Alu -20 289 1 1750 108 123 4 chr4 2624132 2624401 -199703946 - AluSx SINE Alu -1 301 1 37 23 0 0 chr4 2624630 2624674 -199703673 + AT_rich Low_complexity Low_complexity 1 44 0 779 179 8 0 chr4 2624674 2624797 -199703550 - FLAM_C SINE Alu -9 124 1 1354 163 106 12 chr4 2624843 2625088 -199703259 - AluJb SINE Alu -44 268 1 2022 145 10 0 chr4 2625674 2625978 -199702369 - AluJb SINE Alu -5 307 1 194 307 120 7 chr4 2626798 2626948 -199701399 - MIR SINE MIR 0 262 96 2014 132 35 0 chr4 2627113 2627401 -199700946 - AluSg SINE Alu -11 299 2 2173 106 3 39 chr4 2627529 2627698 -199700649 - AluSg SINE Alu -10 300 145 2486 74 0 0 chr4 2627698 2627995 -199700352 - AluY SINE Alu -14 297 1 2173 106 3 39 chr4 2627995 2628136 -199700211 - AluSg SINE Alu -165 145 1 1643 159 78 3 chr4 2628322 2628605 -199699742 + AluJo SINE Alu 1 304 -8 2147 66 92 0 chr4 2628806 2629079 -199699268 - AluY SINE Alu -13 298 1 304 247 0 14 chr4 2629113 2629186 -199699161 - L1ME4a LINE L1 -7 6114 6043 2538 64 0 3 chr4 2629802 2630100 -199698247 + AluY SINE Alu 1 297 -14 331 284 199 0 chr4 2630486 2630687 -199697660 + MIR SINE MIR 22 262 0 213 242 106 0 chr4 2630698 2630764 -199697583 + MIR SINE MIR 111 183 -79 923 126 0 38 chr4 2631958 2632117 -199696230 - MSTC LTR MaLR -51 377 225 1436 169 97 29 chr4 2632237 2632515 -199695832 + AluJb SINE Alu 3 299 -13 2472 86 0 3 chr4 2633067 2633380 -199694967 + AluSx SINE Alu 1 312 0 247 287 54 30 chr4 2633490 2633561 -199694786 + L1MEd LINE L1 278 346 -6026 2328 90 0 3 chr4 2633561 2633860 -199694487 + AluSq SINE Alu 1 298 -15 247 287 54 30 chr4 2633860 2633955 -199694392 + L1MEd LINE L1 346 448 -5924 307 305 125 38 chr4 2634123 2634490 -199693857 + L1MEd LINE L1 686 1084 -5288 321 347 67 21 chr4 2634570 2634763 -199693584 + L1MEd LINE L1 1302 1477 -4907 420 320 33 62 chr4 2634833 2635077 -199693270 - L1MC4 LINE L1 -48 7994 7758 2097 182 73 137 chr4 2635232 2635518 -199692829 - Charlie1 DNA MER1_type 0 2761 2458 2068 89 0 19 chr4 2635518 2635789 -199692558 - AluSq SINE Alu -47 266 1 2097 182 73 137 chr4 2635789 2635996 -199692351 - Charlie1 DNA MER1_type -303 2458 2239 1911 123 0 53 chr4 2635996 2636314 -199692033 - AluSc SINE Alu -8 301 1 2097 182 73 137 chr4 2636314 2636770 -199691577 - Charlie1 DNA MER1_type -522 2239 1872 2102 125 0 0 chr4 2637000 2637279 -199691068 + AluJb SINE Alu 5 283 -29 26 50 0 0 chr4 2637298 2637338 -199691009 + AT_rich Low_complexity Low_complexity 1 40 0 217 232 146 66 chr4 2637655 2637806 -199690541 + MIR SINE MIR 81 243 -19 2272 113 0 3 chr4 2640636 2640945 -199687402 + AluSx SINE Alu 5 312 0 805 235 11 0 chr4 2641089 2641268 -199687079 + AluJo SINE Alu 8 188 -124 2295 77 3 39 chr4 2641269 2641580 -199686767 + AluY SINE Alu 1 300 -11 1684 58 0 19 chr4 2641990 2642198 -199686149 - AluY SINE Alu -12 299 96 321 161 0 0 chr4 2642597 2642653 -199685694 - L1MB8 LINE L1 -30 6148 6093 745 175 60 22 chr4 2642656 2642839 -199685508 - L1MB4 LINE L1 0 6180 5991 308 316 71 26 chr4 2642895 2643050 -199685297 - L1MC5 LINE L1 -473 7488 7327 216 0 0 0 chr4 2644294 2644318 -199684029 + (TG)n Simple_repeat Simple_repeat 1 24 0 2350 112 0 0 chr4 2644770 2645082 -199683265 - AluSx SINE Alu 0 312 1 248 180 49 0 chr4 2645249 2645310 -199683037 + T-rich Low_complexity Low_complexity 3 66 0 2333 108 0 7 chr4 2645415 2645722 -199682625 - AluSx SINE Alu -7 305 1 2354 84 3 3 chr4 2646397 2646695 -199681652 - AluSp SINE Alu -15 298 1 340 156 0 47 chr4 2647374 2647438 -199680909 - AluJ/FLAM SINE Alu -241 61 1 184 233 0 100 chr4 2647585 2647645 -199680702 - MIR3 SINE MIR -12 196 143 1976 157 0 3 chr4 2648341 2648641 -199679706 + AluJo SINE Alu 1 299 -13 1884 174 10 0 chr4 2648641 2648934 -199679413 + AluJo SINE Alu 1 297 -15 3649 135 8 8 chr4 2649013 2649540 -199678807 + MER1A DNA MER1_type 1 527 0 1810 138 70 54 chr4 2650258 2650299 -199678048 - THE1C LTR MaLR 0 375 336 2271 111 7 0 chr4 2650299 2650605 -199677742 + AluSp SINE Alu 1 308 -5 1810 138 70 54 chr4 2650605 2650932 -199677415 - THE1C LTR MaLR -39 336 1 2356 116 138 5 chr4 2651623 2652001 -199676346 - MSTA LTR MaLR 0 428 1 2383 96 0 0 chr4 2652688 2652991 -199675356 - AluSc SINE Alu -6 303 1 455 196 29 20 chr4 2653138 2653240 -199675107 - MLT1C LTR MaLR -42 425 323 963 150 40 93 chr4 2653472 2653698 -199674649 - AluSg/x SINE Alu -14 298 85 306 229 123 0 chr4 2653927 2654049 -199674298 - L1M4 LINE L1 -1581 4565 4429 482 265 118 80 chr4 2654181 2654678 -199673669 - L1M4 LINE L1 -1872 4274 3797 282 95 0 0 chr4 2654678 2654720 -199673627 + (TG)n Simple_repeat Simple_repeat 2 43 0 482 265 118 80 chr4 2654720 2654743 -199673604 - L1M4 LINE L1 -2349 3797 3776 1293 182 3 83 chr4 2654743 2654902 -199673445 - AluJo SINE Alu -24 288 165 1654 158 11 11 chr4 2654902 2655187 -199673160 + AluJo SINE Alu 1 285 -27 1293 182 3 83 chr4 2655187 2655340 -199673007 - AluJo SINE Alu -147 165 1 482 265 118 80 chr4 2655340 2655479 -199672868 - L1M4 LINE L1 -2370 3776 3589 321 215 0 0 chr4 2655935 2656000 -199672347 - Charlie8 DNA MER1_type -2249 168 104 2037 114 0 3 chr4 2656142 2656440 -199671907 + AluSx SINE Alu 4 300 -12 186 361 118 14 chr4 2656623 2656767 -199671580 + L2 LINE L2 3095 3253 -19 298 302 102 34 chr4 2657344 2657549 -199670798 - MIR SINE MIR 0 262 44 2173 99 0 0 chr4 2658002 2658305 -199670042 - AluSx SINE Alu -9 303 1 229 222 0 63 chr4 2660675 2660738 -199667609 + MIR SINE MIR 85 143 -65 2279 92 0 0 chr4 2661155 2661461 -199666886 + AluY SINE Alu 1 306 -5 2062 116 0 0 chr4 2662938 2663249 -199665098 + AluSx SINE Alu 1 311 0 1916 198 82 140 chr4 2663382 2663809 -199664538 - L1ME LINE L1 -1008 5949 5499 2296 78 10 3 chr4 2663809 2664117 -199664230 - AluSg SINE Alu 0 310 1 1916 198 82 140 chr4 2664117 2664743 -199663604 - L1ME LINE L1 -1458 5499 4957 1435 172 21 81 chr4 2664749 2665081 -199663266 - AluJo SINE Alu 0 312 1 932 85 0 0 chr4 2665100 2665230 -199663117 - AluY SINE Alu -11 300 171 2944 245 85 32 chr4 2665230 2666318 -199662029 - L1ME LINE L1 -1976 4981 3837 573 260 12 0 chr4 2666293 2666462 -199661885 - L1ME LINE L1 -3372 3585 3415 * 563 191 24 15 chr4 2666506 2666618 -199661729 - MLT1A1 LTR MaLR -272 93 1 937 243 122 4 chr4 2666625 2667007 -199661340 - L1ME LINE L1 -3549 3408 3009 235 182 18 0 chr4 2667052 2667107 -199661240 - L1ME LINE L1 -4302 2836 2781 1497 214 10 3 chr4 2667161 2667456 -199660891 - AluJo SINE Alu -5 297 1 2145 108 10 0 chr4 2667468 2667765 -199660582 - AluSx SINE Alu -12 300 1 305 256 83 48 chr4 2667765 2667995 -199660352 - L1ME LINE L1 -4343 2795 2558 270 176 0 0 chr4 2668023 2668074 -199660273 + CT-rich Low_complexity Low_complexity 2 52 0 1982 153 0 3 chr4 2668085 2668398 -199659949 - AluSx SINE Alu 0 312 1 302 227 193 20 chr4 2668437 2668587 -199659760 - L1ME LINE L1 -4602 2536 2361 1873 115 31 0 chr4 2668600 2668887 -199659460 + AluSx SINE Alu 11 306 -6 574 202 62 0 chr4 2668895 2669024 -199659323 - L1MC1 LINE L1 -14 6319 6183 544 180 25 33 chr4 2669025 2669147 -199659200 - MER67B LTR ERV1 -463 198 78 1172 263 96 40 chr4 2669187 2669715 -199658632 - L1ME LINE L1 -4868 1987 1544 1871 147 0 23 chr4 2669715 2670015 -199658332 - AluJb SINE Alu -19 293 1 1172 263 96 40 chr4 2670015 2670314 -199658033 - L1ME LINE L1 -5311 1544 1263 308 285 84 28 chr4 2670786 2670965 -199657382 - L1ME LINE L1 -6660 199 11 733 191 32 0 chr4 2673974 2674100 -199654247 + FLAM_C SINE Alu 2 131 -12 2027 251 20 23 chr4 2674270 2674868 -199653479 - L1MCa LINE L1 -3279 3147 2552 7855 186 39 48 chr4 2674877 2675908 -199652439 - L1MB3 LINE L1 -5 6178 5139 2382 61 3 0 chr4 2675908 2676201 -199652146 + AluY SINE Alu 1 294 -17 7855 186 39 48 chr4 2676201 2676651 -199651696 - L1MB3 LINE L1 -1044 5139 4686 262 0 26 26 chr4 2676651 2676690 -199651657 + (TTTTG)n Simple_repeat Simple_repeat 5 43 0 7855 186 39 48 chr4 2676690 2676706 -199651641 - L1MB3 LINE L1 -1497 4686 4671 2256 77 0 7 chr4 2676706 2677006 -199651341 + AluY SINE Alu 1 298 -13 7855 186 39 48 chr4 2677006 2677239 -199651108 - L1MB3 LINE L1 -1512 4671 4437 1707 120 53 0 chr4 2677239 2677531 -199650816 - AluY SINE Alu 0 306 1 7855 186 39 48 chr4 2677531 2677608 -199650739 - L1MB3 LINE L1 -1746 4437 4361 2307 89 0 0 chr4 2677608 2677910 -199650437 - AluSx SINE Alu -10 302 1 7855 186 39 48 chr4 2677910 2678619 -199649728 - L1MB3 LINE L1 -1822 4361 3647 2217 85 16 0 chr4 2678619 2678926 -199649421 - AluSp SINE Alu -1 312 1 7855 186 39 48 chr4 2678926 2679109 -199649238 - L1MB3 LINE L1 -2536 3647 3512 2127 117 0 3 chr4 2679109 2679408 -199648939 - AluSx SINE Alu -14 298 1 7855 186 39 48 chr4 2679408 2679571 -199648776 - L1MB3 LINE L1 -2671 3512 3349 1518 170 3 55 chr4 2679572 2679884 -199648463 - AluJo SINE Alu -16 296 1 2145 106 0 0 chr4 2679897 2680189 -199648158 - AluSx SINE Alu -20 292 1 879 161 11 33 chr4 2680221 2680401 -199647946 - FRAM SINE Alu 0 176 1 1093 215 43 70 chr4 2680402 2680685 -199647662 - L1MB3 LINE L1 -2810 3336 3070 1502 146 16 59 chr4 2680685 2681006 -199647341 - AluJb SINE Alu 0 312 6 1093 215 43 70 chr4 2681006 2681191 -199647156 - L1MB3 LINE L1 -3076 3070 2881 2326 83 0 0 chr4 2681220 2681521 -199646826 - AluY SINE Alu 0 311 11 784 197 0 0 chr4 2681573 2681705 -199646642 - FLAM_A SINE Alu -5 137 6 2274 230 101 71 chr4 2681709 2682532 -199645815 - L1MCa LINE L1 -3934 2492 1695 2063 117 7 0 chr4 2682532 2682840 -199645507 - AluSx SINE Alu -2 310 1 2274 230 101 71 chr4 2682840 2683384 -199644963 - L1MCa LINE L1 -4731 1695 888 432 282 156 26 chr4 2683434 2683895 -199644452 - L1MEd LINE L1 -5002 1117 597 443 302 83 16 chr4 2685584 2685776 -199642571 - L2 LINE L2 -9 3304 3100 662 228 217 11 chr4 2686558 2686747 -199641600 - MIR SINE MIR -7 255 28 253 309 186 5 chr4 2686864 2687068 -199641279 + L2 LINE L2 2533 2773 -541 190 313 57 47 chr4 2687613 2687824 -199640523 - L2 LINE L2 -216 3056 2844 398 280 10 0 chr4 2687858 2687958 -199640389 - L2 LINE L2 -557 2757 2657 756 200 61 22 chr4 2689613 2689793 -199638554 + MIR SINE MIR 74 260 -2 1266 147 0 10 chr4 2690475 2690679 -199637668 - AluSq SINE Alu -27 286 85 299 239 14 0 chr4 2690845 2690916 -199637431 + L1MC4 LINE L1 6941 7012 -1030 805 96 0 26 chr4 2690932 2691047 -199637300 + FLAM_C SINE Alu 29 140 -3 416 348 92 60 chr4 2691057 2691339 -199637008 + L1MC4a LINE L1 7021 7292 -516 2081 125 68 3 chr4 2691339 2691691 -199636656 - THE1C LTR MaLR 0 375 1 416 348 92 60 chr4 2691691 2692027 -199636320 + L1MC4a LINE L1 7292 7592 -216 250 281 0 16 chr4 2692087 2692151 -199636196 + GA-rich Low_complexity Low_complexity 2 64 0 756 184 0 0 chr4 2692164 2692289 -199636058 + FLAM_C SINE Alu 1 125 -18 1636 105 124 15 chr4 2692294 2692561 -199635786 - AluSg SINE Alu -14 296 1 257 271 133 38 chr4 2692587 2692797 -199635550 + L1MC4 LINE L1 7811 8040 -2 2204 111 3 0 chr4 2693504 2693810 -199634537 - AluSg SINE Alu -3 307 1 1310 161 173 4 chr4 2695030 2695300 -199633047 + AluJo SINE Alu 1 311 0 21 36 0 0 chr4 2695549 2695577 -199632770 + AT_rich Low_complexity Low_complexity 1 28 0 1052 135 12 18 chr4 2696436 2696606 -199631741 + AluSg/x SINE Alu 121 289 -21 1063 173 0 0 chr4 2698196 2698375 -199629972 - AluJb SINE Alu -68 244 66 222 91 0 0 chr4 2699002 2699035 -199629312 + (GGA)n Simple_repeat Simple_repeat 1 33 0 1898 110 14 21 chr4 2699924 2700214 -199628133 + AluSx SINE Alu 1 288 -24 3921 249 104 36 chr4 2700265 2701024 -199627323 - L1MC4 LINE L1 -80 7962 7256 2148 92 17 0 chr4 2701024 2701317 -199627030 - AluSp SINE Alu -15 298 1 3921 249 104 36 chr4 2701317 2702189 -199626158 - L1MC4 LINE L1 -786 7256 6220 967 264 64 94 chr4 2702262 2702487 -199625860 - L1MC4 LINE L1 -797 5349 5119 2055 145 0 0 chr4 2702487 2702790 -199625557 - AluSx SINE Alu -7 305 3 967 264 64 94 chr4 2702790 2702929 -199625418 - L1MC4 LINE L1 -1027 5119 4977 1972 136 0 27 chr4 2702929 2703223 -199625124 + AluJo SINE Alu 3 288 -24 2252 102 10 0 chr4 2703231 2703526 -199624821 + AluSc SINE Alu 1 298 -11 1998 169 3 0 chr4 2703530 2703831 -199624516 + AluSx SINE Alu 1 302 -10 967 264 64 94 chr4 2703831 2704160 -199624187 - L1MC4 LINE L1 -1179 4967 4630 2383 88 3 0 chr4 2704160 2704456 -199623891 - AluY SINE Alu -14 297 1 967 264 64 94 chr4 2704456 2704821 -199623526 - L1MC4 LINE L1 -1516 4630 4256 1894 150 6 29 chr4 2704821 2705134 -199623213 - AluJo SINE Alu -6 306 1 967 264 64 94 chr4 2705134 2705178 -199623169 - L1MC4 LINE L1 -1890 4256 4212 1738 183 13 13 chr4 2705178 2705479 -199622868 + AluJo SINE Alu 9 309 -3 967 264 64 94 chr4 2705479 2705530 -199622817 - L1MC4 LINE L1 -1934 4212 4161 2408 103 3 0 chr4 2705530 2705842 -199622505 - AluSp SINE Alu 0 313 1 967 264 64 94 chr4 2705842 2706098 -199622249 - L1MC4 LINE L1 -1985 4161 3899 2009 115 0 21 chr4 2706098 2706385 -199621962 + AluSx SINE Alu 14 294 -18 967 264 64 94 chr4 2706385 2706644 -199621703 - L1MC4 LINE L1 -2247 3899 3634 1349 142 47 91 chr4 2706644 2706953 -199621394 + MER33 DNA MER1_type 1 295 -2290 2043 111 0 108 chr4 2706953 2707297 -199621050 - AluSx SINE Alu -5 307 1 1349 142 47 91 chr4 2707297 2707326 -199621021 + MER33 DNA MER1_type 295 324 0 967 264 64 94 chr4 2707326 2707366 -199620981 - L1MC4 LINE L1 -2512 3634 3594 2011 138 3 0 chr4 2707366 2707672 -199620675 - AluSq SINE Alu 0 307 1 967 264 64 94 chr4 2707672 2707695 -199620652 - L1MC4 LINE L1 -2552 3594 3572 2235 114 0 9 chr4 2707695 2708011 -199620336 - AluSq SINE Alu 0 313 1 967 264 64 94 chr4 2708011 2708673 -199619674 - L1MC4 LINE L1 -2574 3572 2892 2104 89 14 11 chr4 2708673 2708979 -199619368 + AluSg SINE Alu 1 307 0 967 264 64 94 chr4 2708979 2709410 -199618937 - L1MC4 LINE L1 -3254 2892 2450 2414 97 0 0 chr4 2709410 2709720 -199618627 - AluSg SINE Alu 0 310 1 967 264 64 94 chr4 2709720 2709740 -199618607 - L1MC4 LINE L1 -3696 2450 2431 1787 183 0 13 chr4 2709740 2710052 -199618295 - AluJb SINE Alu -4 308 1 967 264 64 94 chr4 2710052 2710095 -199618252 - L1MC4 LINE L1 -3715 2431 2388 2594 59 0 3 chr4 2710095 2710400 -199617947 - AluY SINE Alu -7 304 1 967 264 64 94 chr4 2710400 2710566 -199617781 - L1MC4 LINE L1 -3758 2388 2219 2335 97 0 0 chr4 2710566 2710888 -199617459 - AluSx SINE Alu 0 312 1 967 264 64 94 chr4 2710888 2710915 -199617432 - L1MC4 LINE L1 -3927 2219 2905 1920 121 81 0 chr4 2710915 2711188 -199617159 + AluSx SINE Alu 1 295 -17 967 264 64 94 chr4 2711188 2711413 -199616934 - L1MC4 LINE L1 -3240 2906 2676 260 222 0 16 chr4 2711448 2711511 -199616836 + (CATATA)n Simple_repeat Simple_repeat 2 63 0 22 0 0 0 chr4 2712043 2712065 -199616282 + AT_rich Low_complexity Low_complexity 1 22 0 2372 99 0 7 chr4 2712069 2712371 -199615976 + AluSx SINE Alu 1 300 -12 2410 78 0 3 chr4 2712375 2712669 -199615678 + AluSc SINE Alu 3 295 -14 1800 163 50 0 chr4 2714429 2714711 -199613636 + AluJb SINE Alu 1 296 -16 331 253 234 7 chr4 2715645 2715799 -199612548 + MER5A DNA MER1_type 1 189 0 2170 123 3 0 chr4 2715924 2716224 -199612123 - AluSx SINE Alu -11 301 1 1888 161 14 0 chr4 2716226 2716512 -199611835 - AluSx SINE Alu -6 306 17 2213 115 0 10 chr4 2716559 2716864 -199611483 + AluSx SINE Alu 1 302 -10 1043 131 0 13 chr4 2716868 2717021 -199611326 + FRAM SINE Alu 13 163 -13 1410 90 0 6 chr4 2717024 2717201 -199611146 - AluSq SINE Alu -135 178 3 293 251 101 52 chr4 2717232 2717559 -199610788 + L1ME3 LINE L1 2938 3280 -2866 388 212 93 34 chr4 2717568 2717686 -199610661 + L1MC5 LINE L1 7807 7931 -30 1750 151 28 14 chr4 2717695 2717980 -199610367 + AluJb SINE Alu 3 291 -21 238 296 116 73 chr4 2718008 2718447 -199609900 + L1ME3 LINE L1 3292 3749 -2397 862 123 0 0 chr4 2718450 2718564 -199609783 + AluSp/q SINE Alu 175 288 -25 337 243 57 64 chr4 2718566 2718706 -199609641 + L1ME3 LINE L1 3710 3848 -2298 2315 85 20 0 chr4 2718712 2719007 -199609340 + AluSp SINE Alu 1 301 -12 303 93 0 0 chr4 2719011 2719054 -199609293 + (TCCC)n Simple_repeat Simple_repeat 4 46 0 1679 161 3 25 chr4 2719057 2719343 -199609004 - AluJb SINE Alu -32 280 1 1873 169 10 0 chr4 2719622 2719912 -199608435 + AluJo SINE Alu 5 297 -15 285 323 62 13 chr4 2719912 2720138 -199608209 + L1ME3 LINE L1 4322 4558 -1588 1590 181 26 36 chr4 2720139 2720279 -199608068 + AluJo SINE Alu 1 141 -171 2706 49 0 0 chr4 2720279 2720585 -199607762 + AluY SINE Alu 1 306 -5 1590 181 26 36 chr4 2720585 2720748 -199607599 + AluJo SINE Alu 141 301 -11 316 306 20 41 chr4 2720890 2721037 -199607310 + L1ME3 LINE L1 5497 5629 -533 312 285 73 61 chr4 2721127 2721292 -199607055 + L1ME3 LINE L1 5804 5970 -192 575 220 55 0 chr4 2722089 2722198 -199606149 - AluJb SINE Alu -195 117 3 2332 82 0 3 chr4 2722235 2722528 -199605819 + AluY SINE Alu 1 292 -19 2228 97 10 3 chr4 2722540 2722830 -199605517 + AluSg1 SINE Alu 1 292 -17 862 103 58 17 chr4 2722831 2723005 -199605342 - LOR1-int LTR ERV1 -2144 4187 4007 896 171 57 0 chr4 2723039 2723197 -199605150 - AluJb SINE Alu -2 310 144 987 155 123 40 chr4 2723206 2723483 -199604864 - LOR1-int LTR ERV1 -3653 4467 4168 501 235 11 74 chr4 2723501 2723786 -199604561 - LOR1-int LTR ERV1 -1907 2973 2707 837 178 40 7 chr4 2723801 2723953 -199604394 + FRAM SINE Alu 1 151 -25 2117 121 0 29 chr4 2724102 2724417 -199603930 - AluSq SINE Alu -7 306 1 22 0 0 0 chr4 2724424 2724446 -199603901 + AT_rich Low_complexity Low_complexity 1 22 0 207 162 0 0 chr4 2724447 2724484 -199603863 + (TA)n Simple_repeat Simple_repeat 2 38 0 1425 134 13 22 chr4 2724491 2724715 -199603632 + AluJo SINE Alu 88 309 -3 610 219 38 104 chr4 2724724 2724952 -199603395 + LTR56 LTR ERV1 58 265 -180 1612 169 6 60 chr4 2724952 2725125 -199603222 - AluJb SINE Alu -15 297 147 2489 70 3 6 chr4 2725125 2725437 -199602910 - AluY SINE Alu 0 311 1 1612 169 6 60 chr4 2725437 2725577 -199602770 - AluJb SINE Alu -165 147 1 610 219 38 104 chr4 2725577 2725635 -199602712 + LTR56 LTR ERV1 265 325 -120 1974 121 3 65 chr4 2725887 2726210 -199602137 + AluSq SINE Alu 1 303 -10 2393 72 7 0 chr4 2726218 2726508 -199601839 + AluSc SINE Alu 1 292 -17 352 271 122 0 chr4 2726875 2726982 -199601365 + MER34B LTR ERV1 5 124 -441 240 108 54 0 chr4 2727130 2727167 -199601180 - FLAM_C SINE Alu 0 170 132 2119 88 51 17 chr4 2727180 2727475 -199600872 - AluSp SINE Alu -8 305 1 551 183 125 17 chr4 2727490 2727610 -199600737 - FLAM_C SINE Alu 0 133 1 1772 154 3 32 chr4 2728139 2728227 -199600120 - AluJb SINE Alu -1 311 222 3992 181 56 1 chr4 2728227 2728923 -199599424 + MER50 LTR ERV1 1 734 0 1772 154 3 32 chr4 2728923 2729146 -199599201 - AluJb SINE Alu -90 222 9 1627 169 17 24 chr4 2729154 2729450 -199598897 - AluJb SINE Alu -18 294 1 326 302 93 14 chr4 2729480 2729619 -199598728 + LTR49-int LTR ERV1 1528 1677 -4654 2333 95 0 0 chr4 2729651 2729947 -199598400 + AluY SINE Alu 1 296 -15 1246 136 23 0 chr4 2729968 2730145 -199598202 + AluSg/x SINE Alu 116 296 -16 2383 109 3 0 chr4 2730157 2730468 -199597879 + AluSq SINE Alu 1 312 -1 959 141 20 0 chr4 2730470 2730619 -199597728 + AluYa8 SINE Alu 139 290 -20 781 138 0 0 chr4 2730619 2730728 -199597619 - AluJb SINE Alu -202 110 2 232 148 49 49 chr4 2730728 2730789 -199597558 - LTR56 LTR ERV1 -384 61 1 226 303 59 0 chr4 2732131 2732250 -199596097 - L2 LINE L2 -716 2598 2473 1142 181 70 31 chr4 2733338 2733565 -199594782 - MER46A DNA MER2_type 0 236 1 1526 235 163 10 chr4 2733631 2734145 -199594202 + L1M4b LINE L1 632 1224 -5635 322 163 23 58 chr4 2734170 2734256 -199594091 + L1M4b LINE L1 1668 1750 -5210 255 204 0 0 chr4 2734264 2734318 -199594029 + (CATATA)n Simple_repeat Simple_repeat 3 56 0 2030 139 0 0 chr4 2734327 2734608 -199593739 - AluSx SINE Alu -31 281 1 751 245 58 0 chr4 2734623 2734864 -199593483 + L1M4b LINE L1 1702 1956 -4899 * 795 227 146 18 chr4 2734863 2735198 -199593149 + L1M4b LINE L1 3826 4203 -2754 1473 217 8 42 chr4 2735198 2735560 -199592787 - MLT1A1 LTR MaLR 0 365 1 2860 208 53 20 chr4 2735560 2736294 -199592053 + L1M4b LINE L1 4199 4956 -2001 1936 100 8 0 chr4 2736295 2736545 -199591802 + AluSg SINE Alu 44 295 -15 2323 82 0 26 chr4 2736549 2736854 -199591493 + AluY SINE Alu 1 297 -14 17749 77 19 24 chr4 2736860 2739108 -199589239 + HERVL LTR ERVL 2875 5134 -520 2386 71 3 10 chr4 2739108 2739405 -199588942 + AluY SINE Alu 1 295 -16 17749 77 19 24 chr4 2739405 2739860 -199588487 + HERVL LTR ERVL 5134 5485 -169 2132 100 13 17 chr4 2739860 2740161 -199588186 + AluSq SINE Alu 1 300 -13 17749 77 19 24 chr4 2740161 2740331 -199588016 + HERVL LTR ERVL 5485 5654 0 3378 49 30 5 chr4 2740333 2740764 -199587583 + MLT2A1 LTR ERVL 3 444 0 2232 99 7 30 chr4 2747413 2747580 -199580767 - AluSq SINE Alu -16 297 139 2405 61 0 51 chr4 2747580 2747891 -199580456 - AluY SINE Alu -16 295 1 2232 99 7 30 chr4 2747891 2748026 -199580321 - AluSq SINE Alu -174 139 2 1983 138 20 3 chr4 2748028 2748325 -199580022 - AluJb SINE Alu -10 302 1 757 136 0 32 chr4 2748378 2748503 -199579844 - FLAM_A SINE Alu -11 122 2 1361 229 87 33 chr4 2748568 2749003 -199579344 + MLT1C LTR MaLR 1 467 0 1730 184 32 0 chr4 2749054 2749336 -199579011 - AluJb SINE Alu -21 291 1 356 0 23 0 chr4 2749631 2749675 -199578672 + (TTA)n Simple_repeat Simple_repeat 2 46 0 753 218 0 0 chr4 2749675 2749808 -199578539 - AluJo/FRAM SINE Alu -27 285 153 387 138 31 0 chr4 2749808 2749873 -199578474 + AluJb SINE Alu 211 277 -25 572 118 0 32 chr4 2749913 2750006 -199578341 - FLAM_A SINE Alu -8 134 45 361 182 0 0 chr4 2750675 2750741 -199577606 - MLT1C LTR MaLR -10 457 392 1981 94 19 11 chr4 2750743 2751008 -199577339 + AluJo SINE Alu 21 287 -25 180 111 0 0 chr4 2751008 2751035 -199577312 + (GGGGA)n Simple_repeat Simple_repeat 4 30 0 247 109 0 55 chr4 2751037 2751058 -199577289 + (GAAAA)n Simple_repeat Simple_repeat 3 24 -30 2254 103 3 3 chr4 2751058 2751368 -199576979 + AluSg SINE Alu 1 310 0 247 109 0 55 chr4 2751368 2751401 -199576946 + (GAAAA)n Simple_repeat Simple_repeat 24 54 0 1595 162 0 87 chr4 2752002 2752335 -199576012 + AluJo SINE Alu 7 310 -2 2049 142 0 16 chr4 2752392 2752674 -199575673 + AluJo SINE Alu 2 301 -11 22 0 0 0 chr4 2752674 2752696 -199575651 + AT_rich Low_complexity Low_complexity 1 22 0 2049 142 0 16 chr4 2752696 2752708 -199575639 + AluJo SINE Alu 301 312 0 280 322 35 35 chr4 2753161 2753323 -199575024 + L1ME4a LINE L1 5896 6091 -30 21 36 0 0 chr4 2753323 2753351 -199574996 + AT_rich Low_complexity Low_complexity 1 28 0 280 322 35 35 chr4 2753351 2753367 -199574980 + L1ME4a LINE L1 6091 6105 -16 2426 54 3 0 chr4 2753650 2753947 -199574400 - AluY SINE Alu -11 300 3 1785 158 10 3 chr4 2753960 2754258 -199574089 - AluJb SINE Alu -12 300 1 24 32 0 0 chr4 2755533 2755564 -199572783 + GC_rich Low_complexity Low_complexity 1 31 0 22 35 0 0 chr4 2755569 2755598 -199572749 + GC_rich Low_complexity Low_complexity 1 29 0 225 199 21 28 chr4 2755639 2755780 -199572567 + (CCCCG)n Simple_repeat Simple_repeat 5 144 0 2287 72 3 10 chr4 2756148 2756454 -199571893 - AluSq SINE Alu -1 312 9 210 301 49 77 chr4 2756910 2757053 -199571294 + MIR SINE MIR 100 238 -24 234 253 46 58 chr4 2757124 2757211 -199571136 + MIR SINE MIR 56 141 -67 658 237 74 86 chr4 2757225 2757268 -199571079 - MER46C DNA MER2_type -4 334 292 270 81 0 0 chr4 2757268 2757305 -199571042 + (TATTG)n Simple_repeat Simple_repeat 1 37 0 2106 93 3 7 chr4 2757306 2757596 -199570751 - AluSx SINE Alu -23 289 1 658 237 74 86 chr4 2757596 2757650 -199570697 - MER46C DNA MER2_type -46 292 239 2592 222 38 11 chr4 2757650 2758176 -199570171 + MLT1F LTR MaLR 1 540 -2 658 237 74 86 chr4 2758176 2758352 -199569995 - MER46C DNA MER2_type -99 239 60 1769 167 13 7 chr4 2758352 2758657 -199569690 + AluJo SINE Alu 1 307 -5 658 237 74 86 chr4 2758657 2758716 -199569631 - MER46C DNA MER2_type -278 60 2 2311 89 0 0 chr4 2758946 2759249 -199569098 + AluSx SINE Alu 1 303 -9 213 39 0 0 chr4 2759414 2759440 -199568907 + (TCCC)n Simple_repeat Simple_repeat 3 28 0 2111 127 13 0 chr4 2759452 2759751 -199568596 - AluSx SINE Alu -9 303 1 1246 221 202 12 chr4 2759788 2760262 -199568085 + MER77 LTR ERV1 1 547 -15 264 334 85 5 chr4 2760562 2760762 -199567585 + L2 LINE L2 2804 3015 -257 248 330 62 0 chr4 2760767 2760879 -199567468 + L2 LINE L2 2858 2976 -296 344 339 23 18 chr4 2761347 2761518 -199566829 - L2 LINE L2 -294 3019 2848 2850 116 112 71 chr4 2761588 2762642 -199565705 - pTR5 LTR ERV1 -1 2437 970 1014 87 25 6 chr4 2762619 2762780 -199565567 + pTR5 LTR ERV1 229 392 -2046 * 211 221 29 0 chr4 2763567 2763635 -199564712 + (CCCCG)n Simple_repeat Simple_repeat 4 73 0 1561 87 5 5 chr4 2763724 2763931 -199564416 - AluSg/x SINE Alu -24 288 82 2331 64 7 7 chr4 2764590 2764887 -199563460 - AluY SINE Alu -14 297 1 1828 117 10 52 chr4 2764891 2765198 -199563149 - AluJb SINE Alu -18 294 1 618 256 133 5 chr4 2765421 2765687 -199562660 - L2 LINE L2 -284 3029 2726 267 348 27 27 chr4 2765687 2765799 -199562548 - L2 LINE L2 -701 2613 2502 1829 204 34 50 chr4 2765812 2766317 -199562030 + MLT1D LTR MaLR 9 505 0 248 286 32 56 chr4 2766320 2766446 -199561901 - L2 LINE L2 -823 2491 2369 231 239 28 28 chr4 2766482 2766553 -199561794 + L2 LINE L2 3202 3272 0 2972 233 170 101 chr4 2768062 2768863 -199559484 + HAL1 LINE L1 258 1002 -1505 854 146 0 0 chr4 2768863 2768993 -199559354 + FLAM_A SINE Alu 8 137 -5 2972 233 170 101 chr4 2768993 2769150 -199559197 + HAL1 LINE L1 1002 1147 -1360 2173 101 34 0 chr4 2769150 2769446 -199558901 + AluSx SINE Alu 1 306 -6 2972 233 170 101 chr4 2769446 2769598 -199558749 + HAL1 LINE L1 1147 1287 -1220 2102 118 0 3 chr4 2769598 2769894 -199558453 + AluSq SINE Alu 1 295 -18 2972 233 170 101 chr4 2769894 2770723 -199557624 + HAL1 LINE L1 1287 2479 -28 1860 168 23 13 chr4 2770723 2771032 -199557315 + AluJo SINE Alu 1 312 0 2972 233 170 101 chr4 2771032 2771064 -199557283 + HAL1 LINE L1 2479 2507 0 2238 96 0 0 chr4 2771436 2771729 -199556618 - AluSx SINE Alu -19 293 1 1564 197 62 75 chr4 2771879 2771955 -199556392 - MSTD LTR MaLR 0 396 321 2277 90 3 0 chr4 2771955 2772265 -199556082 - AluY SINE Alu 0 311 1 1564 197 62 75 chr4 2772265 2772589 -199555758 - MSTD LTR MaLR -75 321 1 1733 173 3 10 chr4 2772595 2772901 -199555446 - AluJo SINE Alu -8 304 1 231 36 0 0 chr4 2772904 2772932 -199555415 + (ATTG)n Simple_repeat Simple_repeat 2 29 0 832 113 0 0 chr4 2772932 2773047 -199555300 - AluJb SINE Alu -26 286 172 543 247 98 60 chr4 2773157 2773286 -199555061 + MER57-int LTR ERV1 56 199 -7338 2363 63 0 3 chr4 2773286 2773586 -199554761 + AluY SINE Alu 1 299 -12 543 247 98 60 chr4 2773586 2773691 -199554656 + MER57-int LTR ERV1 199 299 -7238 2357 81 0 0 chr4 2773701 2773998 -199554349 - AluSg1 SINE Alu -12 297 1 958 288 47 35 chr4 2774043 2774244 -199554103 + MER57-int LTR ERV1 2411 2608 -4929 2435 50 0 13 chr4 2774244 2774546 -199553801 - AluSc SINE Alu -11 298 1 958 288 47 35 chr4 2774546 2774947 -199553400 + MER57-int LTR ERV1 2608 6190 -1347 2291 100 0 0 chr4 2775143 2775444 -199552903 + AluSx SINE Alu 1 301 -11 1641 154 50 0 chr4 2775486 2775766 -199552581 - AluJo SINE Alu -11 301 8 2210 120 3 0 chr4 2775806 2776106 -199552241 - AluSx SINE Alu -11 301 1 2362 93 0 0 chr4 2776311 2776622 -199551725 - AluY SINE Alu 0 311 1 4442 77 42 32 chr4 2776622 2776943 -199551404 - MER4-int LTR ERV1 -1786 4812 4496 2122 138 0 6 chr4 2776943 2777255 -199551092 - AluSx SINE Alu 0 312 3 4442 77 42 32 chr4 2777255 2777688 -199550659 - MER4-int LTR ERV1 -2102 4496 4050 2015 192 39 94 chr4 2777691 2778232 -199550115 - LTR9 LTR ERV1 -11 601 99 2211 128 0 0 chr4 2778232 2778544 -199549803 - AluSq SINE Alu -1 312 1 2015 192 39 94 chr4 2778544 2778638 -199549709 - LTR9 LTR ERV1 -513 99 1 528 128 0 11 chr4 2778638 2778732 -199549615 - MER4A-int LTR ERV1 -2545 4053 3961 1599 69 15 0 chr4 2778743 2778946 -199549401 - AluSq SINE Alu -107 206 1 4579 131 86 78 chr4 2778972 2779038 -199549309 - MER4A-int LTR ERV1 -4231 1242 1178 2129 130 0 3 chr4 2779038 2779338 -199549009 + AluSx SINE Alu 1 299 -13 4579 131 86 78 chr4 2779338 2779418 -199548929 - MER4A-int LTR ERV1 -4295 1178 1100 2365 97 0 0 chr4 2779418 2779727 -199548620 + AluY SINE Alu 1 309 -2 4579 131 86 78 chr4 2779727 2780147 -199548200 - MER4A-int LTR ERV1 -4373 1100 684 1902 81 0 0 chr4 2780147 2780383 -199547964 + AluSx SINE Alu 1 236 -76 4579 131 86 78 chr4 2780383 2780473 -199547874 - MER4A-int LTR ERV1 -4789 684 596 351 0 0 0 chr4 2780473 2780512 -199547835 + (TG)n Simple_repeat Simple_repeat 1 39 0 4579 131 86 78 chr4 2780512 2781167 -199547180 - MER4A-int LTR ERV1 -4877 596 1 1552 131 3 83 chr4 2781170 2781551 -199546796 - MER4A LTR ERV1 0 664 256 507 141 10 20 chr4 2781546 2781645 -199546702 - MER4A LTR ERV1 -566 98 1 * 9929 97 46 16 chr4 2781645 2783797 -199544550 - L1PBa LINE L1 -3458 3404 995 1201 131 0 5 chr4 2783793 2783992 -199544355 - L1PBa LINE L1 -6665 198 1 * 2169 101 10 0 chr4 2784003 2784309 -199544038 - AluSx SINE Alu -3 309 1 888 301 17 23 chr4 2784395 2784747 -199543600 + MER57-int LTR ERV1 6794 7143 -394 270 284 0 0 chr4 2784759 2784833 -199543514 + MER57A LTR ERV1 42 115 -288 961 184 107 8 chr4 2784941 2785185 -199543162 + MER57A LTR ERV1 132 399 -4 1648 98 9 0 chr4 2785194 2785418 -199542929 - AluSg SINE Alu -1 311 86 1575 127 89 55 chr4 2788302 2788593 -199539754 + AluJb SINE Alu 5 305 -7 571 302 208 12 chr4 2788680 2789198 -199539149 - L2 LINE L2 -280 3033 2414 286 191 0 43 chr4 2792198 2792292 -199536055 + (CGGGG)n Simple_repeat Simple_repeat 2 91 0 233 154 0 22 chr4 2793211 2793273 -199535074 + MIR SINE MIR 90 148 -114 344 358 37 10 chr4 2794153 2794326 -199534021 + MIR SINE MIR 7 181 -61 483 87 87 0 chr4 2794647 2794716 -199533631 - AluSg SINE Alu -233 76 2 246 216 68 27 chr4 2795344 2795418 -199532929 + MIR SINE MIR 89 165 -97 1966 132 7 0 chr4 2801058 2801347 -199527000 + AluSx SINE Alu 1 291 -21 2032 113 18 0 chr4 2801349 2801633 -199526714 + AluSx SINE Alu 1 289 -23 420 20 0 0 chr4 2801637 2801686 -199526661 + (TG)n Simple_repeat Simple_repeat 2 50 0 403 311 0 0 chr4 2801688 2801778 -199526569 + L1MC4 LINE L1 6614 6703 -1339 367 356 0 0 chr4 2801770 2801860 -199526487 - L1MC4 LINE L1 -1339 6703 6614 * 378 260 0 13 chr4 2801841 2801942 -199526405 + L1MC4 LINE L1 1996 6983 -1339 314 356 0 11 chr4 2801862 2801952 -199526395 - L1MC4 LINE L1 -1339 6703 6615 * 273 169 70 28 chr4 2802748 2802819 -199525528 - MIR SINE MIR -87 121 48 194 231 0 0 chr4 2805289 2805328 -199523019 - MIR SINE MIR -61 147 109 214 329 13 0 chr4 2805802 2805878 -199522469 + (CACCC)n Simple_repeat Simple_repeat 4 80 0 1278 269 75 18 chr4 2807277 2807719 -199520628 - MLT1C LTR MaLR 0 467 1 216 179 0 0 chr4 2812245 2812284 -199516063 + MIR SINE MIR 67 105 -157 180 339 76 8 chr4 2812400 2812518 -199515829 + MIR SINE MIR 103 228 -34 357 356 0 6 chr4 2812612 2812789 -199515558 + (TG)n Simple_repeat Simple_repeat 1 176 0 228 67 0 0 chr4 2813442 2813472 -199514875 + (CA)n Simple_repeat Simple_repeat 1 30 0 183 274 24 113 chr4 2814776 2814900 -199513447 - L2 LINE L2 -145 3127 3015 3103 188 61 7 chr4 2814901 2815003 -199513344 - L1M4 LINE L1 -1774 4372 4277 2068 82 53 4 chr4 2815003 2815284 -199513063 - AluSq SINE Alu -18 295 1 3103 188 61 7 chr4 2815284 2815940 -199512407 - L1M4 LINE L1 -1869 4277 3573 22 35 0 0 chr4 2817066 2817095 -199511252 + GC_rich Low_complexity Low_complexity 1 29 0 44 75 0 0 chr4 2817169 2817262 -199511085 + GC_rich Low_complexity Low_complexity 1 93 0 1403 166 50 13 chr4 2817862 2818163 -199510184 - AluJo SINE Alu 0 312 1 1247 153 0 23 chr4 2818164 2818380 -199509967 - AluJo SINE Alu -15 297 87 1718 140 66 14 chr4 2820499 2820785 -199507562 - AluJb SINE Alu -11 301 1 1258 139 42 14 chr4 2820787 2820798 -199507549 - AluJb SINE Alu -4 308 299 2161 114 10 0 chr4 2820798 2821105 -199507242 - AluSx SINE Alu -2 310 1 1258 139 42 14 chr4 2821105 2821309 -199507038 - AluJb SINE Alu -13 299 87 1037 127 13 6 chr4 2821316 2821474 -199506873 - AluSg/x SINE Alu -17 293 135 260 274 9 19 chr4 2824295 2824401 -199503946 + (CA)n Simple_repeat Simple_repeat 2 106 0 271 178 30 30 chr4 2824414 2824549 -199503798 + (CA)n Simple_repeat Simple_repeat 2 136 0 205 199 28 28 chr4 2825184 2825325 -199503022 + (TG)n Simple_repeat Simple_repeat 2 142 0 338 173 29 29 chr4 2825396 2825569 -199502778 + (TG)n Simple_repeat Simple_repeat 2 174 0 409 306 0 16 chr4 2825582 2825765 -199502582 + (TG)n Simple_repeat Simple_repeat 1 180 0 231 282 0 0 chr4 2825837 2825986 -199502361 + (TG)n Simple_repeat Simple_repeat 2 150 0 273 302 0 0 chr4 2825997 2826083 -199502264 + (TG)n Simple_repeat Simple_repeat 1 86 0 183 80 0 0 chr4 2826963 2826988 -199501359 + (CATCC)n Simple_repeat Simple_repeat 3 27 0 195 42 0 0 chr4 2827109 2827133 -199501214 + (TCCC)n Simple_repeat Simple_repeat 4 27 0 2125 119 0 3 chr4 2829275 2829577 -199498770 - AluSx SINE Alu -11 301 1 212 290 0 0 chr4 2832084 2832146 -199496201 + C-rich Low_complexity Low_complexity 3 64 0 811 165 0 8 chr4 2832220 2832353 -199495994 - FLAM_C SINE Alu -1 132 1 247 264 0 0 chr4 2832526 2832579 -199495768 - MIR SINE MIR -62 146 94 250 320 82 0 chr4 2833341 2833438 -199494909 - MIR SINE MIR -156 106 2 2228 100 0 3 chr4 2834531 2834840 -199493507 - AluSx SINE Alu -4 308 1 203 271 0 0 chr4 2835365 2835413 -199492934 - MIR SINE MIR -107 155 108 * 325 176 54 0 chr4 2835409 2835483 -199492864 + MIR SINE MIR 44 121 -87 255 239 0 5 chr4 2835720 2835785 -199492562 - MIR3 SINE MIR -52 156 92 1806 114 64 0 chr4 2835961 2836242 -199492105 - AluSx SINE Alu -13 299 1 1650 252 81 62 chr4 2837023 2837458 -199490889 - L1ME3A LINE L1 0 6239 5814 1282 97 126 14 chr4 2837458 2837665 -199490682 - MER30 DNA MER1_type 0 230 1 1650 252 81 62 chr4 2837665 2838075 -199490272 - L1ME3A LINE L1 -425 5814 5413 1771 151 20 7 chr4 2838075 2838373 -199489974 - AluJb SINE Alu 0 312 11 1650 252 81 62 chr4 2838373 2838479 -199489868 - L1ME3A LINE L1 -826 5413 5310 1521 187 17 27 chr4 2838479 2838773 -199489574 - AluJo SINE Alu -15 297 7 1650 252 81 62 chr4 2838773 2838859 -199489488 - L1ME3A LINE L1 -929 5310 5227 2155 132 3 0 chr4 2838859 2839170 -199489177 + AluJb SINE Alu 1 312 0 1650 252 81 62 chr4 2839170 2839949 -199488398 - L1ME3A LINE L1 -1012 5227 4385 435 295 199 67 chr4 2839949 2840295 -199488052 - L1ME3A LINE L1 -4112 2284 1893 1862 145 13 7 chr4 2840307 2840611 -199487736 - AluSx SINE Alu -4 308 3 2718 156 125 6 chr4 2840666 2841041 -199487306 - L1MB3 LINE L1 -1 6182 5853 1951 113 13 27 chr4 2841041 2841341 -199487006 + AluJo SINE Alu 14 309 -3 2718 156 125 6 chr4 2841341 2841595 -199486752 - L1MB3 LINE L1 -330 5853 5478 705 196 21 7 chr4 2841625 2841768 -199486579 - BC200 scRNA scRNA -54 146 2 412 234 32 0 chr4 2841768 2841862 -199486485 - L1MB3 LINE L1 -686 5488 5392 297 255 21 7 chr4 2842953 2843098 -199485249 + (CGG)n Simple_repeat Simple_repeat 3 149 0 180 218 36 0 chr4 2843874 2843929 -199484418 - L2 LINE L2 -266 3006 2950 2425 52 0 0 chr4 2843997 2844286 -199484061 - AluSc SINE Alu -20 289 1 588 244 189 13 chr4 2844924 2845306 -199483041 - L1MC5 LINE L1 -209 7752 7304 670 241 47 4 chr4 2845353 2845589 -199482758 - L1MC5 LINE L1 -731 7230 6985 600 210 148 31 chr4 2845589 2845751 -199482596 + AluJb SINE Alu 121 301 -11 2421 70 0 6 chr4 2845751 2846063 -199482284 + AluY SINE Alu 1 310 -1 1873 108 75 0 chr4 2846063 2846340 -199482007 + AluSq SINE Alu 1 299 -14 1582 150 6 27 chr4 2846479 2846835 -199481512 - MER4A LTR ERV1 -1 663 257 2222 105 7 0 chr4 2846849 2847144 -199481203 + AluSx SINE Alu 1 297 -15 1395 221 3 33 chr4 2847391 2847694 -199480653 - AluJo SINE Alu -18 294 1 404 301 43 0 chr4 2847694 2847857 -199480490 - L1MC5 LINE L1 -2072 5736 5567 417 313 89 0 chr4 2847868 2848047 -199480300 - L1ME LINE L1 -422 5699 5505 245 196 216 21 chr4 2848068 2848165 -199480182 + MIR SINE MIR 147 262 0 1983 170 29 52 chr4 2848893 2849180 -199479167 + L1MB7 LINE L1 5657 5930 -254 2113 104 6 41 chr4 2849180 2849350 -199478997 - AluSx SINE Alu -7 305 150 2487 45 0 0 chr4 2849350 2849642 -199478705 - AluY SINE Alu -19 292 1 2113 104 6 41 chr4 2849642 2849787 -199478560 - AluSx SINE Alu -162 150 1 1983 170 29 52 chr4 2849787 2849981 -199478366 + L1MB7 LINE L1 5930 6127 -57 822 210 13 6 chr4 2849981 2850138 -199478209 - FRAM SINE Alu -26 150 1 272 247 34 22 chr4 2850146 2850235 -199478112 + MIR SINE MIR 68 157 -105 2330 70 20 0 chr4 2850755 2851053 -199477294 - AluSp SINE Alu -9 304 1 957 80 11 34 chr4 2851056 2851231 -199477116 + (TTTC)n Simple_repeat Simple_repeat 2 172 0 1403 123 0 5 chr4 2851233 2851444 -199476903 - AluSg/x SINE Alu -1 309 100 1129 165 17 48 chr4 2851612 2851842 -199476505 - AluJo SINE Alu -8 304 82 2080 107 10 3 chr4 2852025 2852315 -199476032 - AluSx SINE Alu -11 301 10 538 283 81 40 chr4 2852321 2852509 -199475838 - L1MEc LINE L1 -3113 3102 2923 2159 128 0 0 chr4 2852509 2852821 -199475526 - AluSq SINE Alu -1 312 1 538 283 81 40 chr4 2852821 2852957 -199475390 - L1MEc LINE L1 -3292 2923 2794 2110 120 0 7 chr4 2852957 2853240 -199475107 + AluSx SINE Alu 1 281 -31 180 97 0 0 chr4 2853241 2853272 -199475075 + (CAAG)n Simple_repeat Simple_repeat 2 32 0 538 283 81 40 chr4 2853272 2853692 -199474655 - L1MEc LINE L1 -3421 2794 2315 1656 206 88 30 chr4 2853692 2854167 -199474180 - MLT1D LTR MaLR 0 505 3 538 283 81 40 chr4 2854167 2854186 -199474161 - L1MEc LINE L1 -3900 2315 2298 322 190 0 0 chr4 2854553 2854611 -199473736 - FAM SINE Alu -2 177 120 1817 161 10 3 chr4 2854615 2854906 -199473441 - AluJb SINE Alu -9 303 11 305 100 0 0 chr4 2854909 2854949 -199473398 + AluSp SINE Alu 140 179 -124 23 0 0 0 chr4 2854967 2854990 -199473357 + AT_rich Low_complexity Low_complexity 1 23 0 752 130 9 17 chr4 2854990 2855105 -199473242 - AluJb SINE Alu -194 118 5 565 249 88 42 chr4 2855119 2855449 -199472898 - L1MEc LINE L1 -4765 1631 1287 2239 128 3 0 chr4 2855502 2855808 -199472539 - AluSx SINE Alu -5 307 1 2355 102 0 3 chr4 2855826 2856129 -199472218 - AluSg SINE Alu -8 302 1 1621 172 11 0 chr4 2856274 2856535 -199471812 + AluJo SINE Alu 29 292 -20 606 270 137 5 chr4 2857191 2857395 -199470952 - MIR SINE MIR 0 262 32 640 218 15 0 chr4 2857625 2857758 -199470589 + FLAM_C SINE Alu 2 136 -7 309 252 96 35 chr4 2857780 2857895 -199470452 - MIR SINE MIR -29 233 112 272 143 41 0 chr4 2858484 2858533 -199469814 + Alu SINE Alu 244 294 -8 292 303 115 0 chr4 2859488 2859610 -199468737 - L2 LINE L2 0 3313 3178 643 229 204 10 chr4 2859629 2859830 -199468517 - MIR SINE MIR -2 260 21 529 293 33 53 chr4 2859835 2860135 -199468212 - L2 LINE L2 -172 3141 2848 423 141 99 0 chr4 2860215 2860286 -199468061 - AluJ/FLAM SINE Alu -230 82 5 883 255 53 67 chr4 2860382 2860533 -199467814 - L2 LINE L2 -947 2367 2215 592 250 65 6 chr4 2860533 2860701 -199467646 - MER5B DNA MER1_type 0 178 1 883 255 53 67 chr4 2860701 2860756 -199467591 - L2 LINE L2 -1099 2215 2161 1356 76 167 5 chr4 2860756 2860954 -199467393 - MER30 DNA MER1_type 0 230 1 883 255 53 67 chr4 2860954 2861178 -199467169 - L2 LINE L2 -1153 2161 1942 359 285 99 90 chr4 2861394 2861826 -199466521 + L2 LINE L2 2875 3310 -3 1573 163 21 52 chr4 2861979 2862268 -199466079 - AluJo SINE Alu -23 289 10 227 29 57 0 chr4 2862632 2862667 -199465680 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 749 155 0 0 chr4 2862670 2862786 -199465561 - FLAM_A SINE Alu -17 116 1 180 238 0 0 chr4 2862786 2862828 -199465519 - MIR SINE MIR -111 151 110 2021 98 11 18 chr4 2863049 2863359 -199464988 + AluSx SINE Alu 1 308 0 300 198 20 0 chr4 2863736 2863813 -199464534 - FLAM_A SINE Alu -3 130 66 21 49 0 49 chr4 2863818 2863879 -199464468 + AT_rich Low_complexity Low_complexity 1 58 0 27 0 0 0 chr4 2864735 2864762 -199463585 + AT_rich Low_complexity Low_complexity 1 27 0 2055 115 7 30 chr4 2865089 2865394 -199462953 - AluSx SINE Alu -14 298 1 305 202 167 0 chr4 2865484 2865568 -199462779 - L2 LINE L2 0 3272 3175 1856 150 3 3 chr4 2865724 2866011 -199462336 + AluJb SINE Alu 18 304 -8 203 356 20 10 chr4 2866373 2866474 -199461873 + MIR SINE MIR 13 114 -148 183 343 14 0 chr4 2866739 2866812 -199461535 + MIR SINE MIR 20 93 -169 230 347 40 16 chr4 2867536 2867660 -199460687 - L2 LINE L2 -25 3247 3121 2347 161 64 7 chr4 2868067 2868507 -199459840 - MLT1C LTR MaLR -2 465 1 2379 81 0 10 chr4 2869881 2870189 -199458158 - AluY SINE Alu -6 305 1 22 35 0 0 chr4 2870359 2870388 -199457959 + AT_rich Low_complexity Low_complexity 1 29 0 286 314 105 12 chr4 2870535 2870707 -199457640 - L1MC5 LINE L1 -54 7907 7720 519 141 21 70 chr4 2870722 2870864 -199457483 - L1MC5 LINE L1 -287 7674 7540 427 226 51 67 chr4 2870872 2871067 -199457280 - L2 LINE L2 -573 2741 2550 1606 183 7 14 chr4 2871483 2871778 -199456569 - AluJb SINE Alu -19 293 1 32 26 0 0 chr4 2871787 2871826 -199456521 + AT_rich Low_complexity Low_complexity 1 39 0 22 56 0 0 chr4 2871888 2871924 -199456423 + AT_rich Low_complexity Low_complexity 1 36 0 1803 168 7 0 chr4 2871924 2872209 -199456138 - AluSx SINE Alu -24 288 2 1716 164 3 24 chr4 2872859 2873152 -199455195 + AluJo SINE Alu 14 300 -12 2392 79 7 0 chr4 2873243 2873546 -199454801 + AluSx SINE Alu 1 305 -7 446 231 10 0 chr4 2873718 2873819 -199454528 + MER5A DNA MER1_type 11 101 -77 1564 184 0 7 chr4 2873867 2874144 -199454203 + AluJb SINE Alu 5 279 -33 2322 96 0 10 chr4 2875338 2875473 -199452874 + AluSx SINE Alu 1 136 -176 2441 64 0 10 chr4 2875473 2875771 -199452576 + AluY SINE Alu 1 295 -16 2322 96 0 10 chr4 2875771 2875938 -199452409 + AluSx SINE Alu 136 300 -12 188 304 101 0 chr4 2876226 2876305 -199452042 - L2 LINE L2 -12 3301 3215 387 213 96 0 chr4 2876329 2876423 -199451924 - L1ME3 LINE L1 -7 6155 6053 729 311 107 48 chr4 2876519 2876622 -199451725 - L2 LINE L2 -255 3058 2962 1794 132 70 0 chr4 2876622 2876895 -199451452 + AluJb SINE Alu 1 292 -20 729 311 107 48 chr4 2876895 2877382 -199450965 - L2 LINE L2 -351 2962 2435 344 176 68 0 chr4 2877460 2877534 -199450813 - L2 LINE L2 -27 3286 3208 844 161 0 0 chr4 2877562 2877686 -199450661 + FRAM SINE Alu 1 124 -52 431 272 159 28 chr4 2877714 2878078 -199450269 - L2 LINE L2 -2242 1072 661 269 340 30 10 chr4 2878262 2878362 -199449985 + L2 LINE L2 3139 3240 -32 1239 99 0 0 chr4 2878549 2878701 -199449646 - AluSg/x SINE Alu -20 292 141 1632 133 0 4 chr4 2878701 2878934 -199449413 - AluSx SINE Alu -80 232 1 2715 48 0 0 chr4 2879382 2879693 -199448654 - AluY SINE Alu 0 311 1 316 177 24 171 chr4 2879870 2879991 -199448356 - L1ME4a LINE L1 -32 6089 5996 2407 94 0 3 chr4 2879991 2880298 -199448049 - AluSx SINE Alu -6 306 1 316 177 24 171 chr4 2880298 2880340 -199448007 - L1ME4a LINE L1 -125 5996 5950 699 251 129 8 chr4 2880466 2880721 -199447626 - L1ME4a LINE L1 -348 5773 5488 2059 134 3 7 chr4 2881774 2882081 -199446266 - AluSx SINE Alu -6 306 1 580 186 143 74 chr4 2882082 2882313 -199446034 - L1MC5 LINE L1 -808 7153 6907 394 267 25 0 chr4 2882312 2882432 -199445915 - L1ME4a LINE L1 -2174 3972 3850 * 661 188 0 8 chr4 2882442 2882570 -199445777 - FRAM SINE Alu -1 175 49 2444 82 0 0 chr4 2882585 2882890 -199445457 - AluY SINE Alu -6 305 1 23 33 0 0 chr4 2882944 2882974 -199445373 + AT_rich Low_complexity Low_complexity 1 30 0 271 218 119 0 chr4 2883021 2883122 -199445225 - L1ME4a LINE L1 -3105 3041 2929 714 172 112 0 chr4 2883275 2883409 -199444938 - FAM SINE Alu -36 149 1 198 200 62 46 chr4 2884256 2884321 -199444026 + L2 LINE L2 1217 1282 -2032 2586 44 0 3 chr4 2884532 2884829 -199443518 - AluY SINE Alu -15 296 1 287 254 149 22 chr4 2885420 2885601 -199442746 + L2 LINE L2 3109 3312 -1 1827 132 0 62 chr4 2886974 2887298 -199441049 - AluSx SINE Alu 0 305 1 324 0 0 0 chr4 2887320 2887356 -199440991 + (TTA)n Simple_repeat Simple_repeat 2 37 0 2028 124 3 7 chr4 2887358 2887640 -199440707 - AluSx SINE Alu -31 281 1 560 293 77 50 chr4 2887910 2888462 -199439885 + L1ME LINE L1 4615 5151 -1011 2013 124 10 10 chr4 2888462 2888752 -199439595 + AluSx SINE Alu 1 290 -22 560 293 77 50 chr4 2888752 2888839 -199439508 + L1ME LINE L1 5151 5234 -928 2154 112 17 0 chr4 2888839 2889135 -199439212 + AluSx SINE Alu 1 301 -11 560 293 77 50 chr4 2889135 2889327 -199439020 + L1ME LINE L1 5234 5468 -694 2224 99 3 7 chr4 2889327 2889630 -199438717 - AluY SINE Alu -9 302 1 866 153 0 29 chr4 2889925 2890062 -199438285 + FLAM_C SINE Alu 1 133 0 2105 116 23 13 chr4 2890089 2890392 -199437955 + AluSx SINE Alu 1 306 -6 327 259 111 44 chr4 2890603 2890738 -199437609 - MIR SINE MIR -115 147 4 272 305 130 11 chr4 2890754 2890931 -199437416 + L3 LINE CR1 1205 1402 -175 231 356 22 37 chr4 2891019 2891154 -199437193 + L3 LINE CR1 1423 1555 -22 274 232 98 0 chr4 2891275 2891357 -199436990 + L2 LINE L2 3190 3279 -34 1932 145 10 19 chr4 2891474 2891785 -199436562 + AluJo SINE Alu 5 312 0 1679 143 3 44 chr4 2891814 2892151 -199436196 - AluSx SINE Alu 0 325 1 2006 146 0 10 chr4 2892250 2892551 -199435796 + AluJb SINE Alu 1 298 -14 376 149 402 0 chr4 2893236 2893323 -199435024 + FLAM_C SINE Alu 5 126 -7 650 123 105 0 chr4 2893346 2893460 -199434887 + AluSg/x SINE Alu 184 309 -1 1755 161 23 7 chr4 2893901 2894205 -199434142 + AluJo SINE Alu 1 309 -3 2505 64 0 0 chr4 2894812 2895109 -199433238 - AluY SINE Alu -14 297 1 2150 130 0 0 chr4 2895138 2895431 -199432916 - AluSx SINE Alu -19 293 1 1864 167 3 3 chr4 2895682 2895981 -199432366 - AluSx SINE Alu -13 299 1 35 54 0 0 chr4 2896300 2896356 -199431991 + AT_rich Low_complexity Low_complexity 1 56 0 1140 176 132 37 chr4 2896470 2896743 -199431604 - AluJo SINE Alu 0 302 4 219 311 82 0 chr4 2899803 2899864 -199428483 - L2 LINE L2 -71 3201 3136 742 138 98 0 chr4 2900590 2900713 -199427634 + AluJo SINE Alu 1 135 -177 795 187 0 15 chr4 2900845 2900979 -199427368 - FLAM_C SINE Alu -1 132 1 2082 109 32 0 chr4 2901381 2901666 -199426681 + AluSx SINE Alu 1 294 -18 2302 111 0 13 chr4 2901669 2901984 -199426363 + AluY SINE Alu 1 311 0 905 248 63 4 chr4 2902247 2902485 -199425862 - MLT1E LTR MaLR -1 592 341 485 223 223 45 chr4 2902494 2902696 -199425651 - MLT1E LTR MaLR -355 238 1 1499 286 70 16 chr4 2903058 2903632 -199424715 - L1ME3A LINE L1 -2 6168 5564 227 288 14 13 chr4 2905198 2905288 -199423059 + CT-rich Low_complexity Low_complexity 1 90 0 21 0 0 0 chr4 2905644 2905665 -199422682 + AT_rich Low_complexity Low_complexity 1 21 0 1776 140 0 33 chr4 2910373 2910680 -199417667 - AluJb SINE Alu -14 298 2 1880 169 7 0 chr4 2911443 2911751 -199416596 - AluJb SINE Alu -2 310 1 2025 137 0 9 chr4 2911757 2912072 -199416275 - AluSx SINE Alu 0 312 1 1343 54 0 0 chr4 2912835 2913001 -199415346 + AluY SINE Alu 134 299 -12 1828 68 59 94 chr4 2914149 2914283 -199414064 + AluSp SINE Alu 1 138 -175 2089 100 0 3 chr4 2914283 2914573 -199413774 + AluY SINE Alu 1 289 -22 1828 68 59 94 chr4 2914573 2914745 -199413602 + AluSp SINE Alu 138 296 -17 2226 82 0 0 chr4 2915087 2915409 -199412938 - AluSc SINE Alu 0 322 1 30557 110 13 60 chr4 2915448 2917749 -199410598 - L1PA7 LINE L1 0 6154 3746 1926 119 36 23 chr4 2917749 2918052 -199410295 - AluSc SINE Alu 0 309 3 30557 110 13 60 chr4 2918052 2920047 -199408300 - L1PA7 LINE L1 -2408 3746 2276 2288 75 0 3 chr4 2920047 2920342 -199408005 - AluY SINE Alu -17 294 1 30557 110 13 60 chr4 2920342 2922508 -199405839 - L1PA7 LINE L1 -3878 2276 9 283 333 69 7 chr4 2922599 2922743 -199405604 - MIR SINE MIR -2 260 108 225 237 0 0 chr4 2933187 2933246 -199395101 + (CCCCAA)n Simple_repeat Simple_repeat 5 63 0 434 283 5 35 chr4 2933339 2933656 -199394691 + C-rich Low_complexity Low_complexity 1 307 0 343 295 145 21 chr4 2934183 2934424 -199393923 - MLT2F LTR ERVL -89 574 304 277 280 40 0 chr4 2934523 2934598 -199393749 - MLT2F LTR ERVL -532 131 54 3314 143 118 33 chr4 2934749 2935386 -199392961 + LTR8 LTR ERV1 1 691 0 1943 75 101 0 chr4 2937160 2937427 -199390920 + AluSp SINE Alu 1 294 -19 1658 152 11 14 chr4 2937427 2937704 -199390643 - AluJo SINE Alu -21 291 16 228 305 73 24 chr4 2939516 2939598 -199388749 - L2 LINE L2 -49 3264 3179 589 268 91 0 chr4 2942541 2942761 -199385586 - Charlie5 DNA MER1_type -12 2600 2361 2239 98 0 0 chr4 2943323 2943618 -199384729 - AluSp SINE Alu -18 295 1 181 149 43 21 chr4 2945736 2945783 -199382564 - MIR SINE MIR -42 220 173 2209 93 0 0 chr4 2947375 2947666 -199380681 - AluSx SINE Alu -21 291 1 1776 169 3 3 chr4 2948114 2948415 -199379932 - AluJb SINE Alu -11 301 1 209 186 0 0 chr4 2949783 2949826 -199378521 + GA-rich Low_complexity Low_complexity 1 43 0 705 187 0 22 chr4 2950603 2950737 -199377610 + AluJo SINE Alu 11 141 -171 2249 94 7 0 chr4 2950737 2951036 -199377311 + AluSx SINE Alu 1 301 -11 23 33 0 0 chr4 2951334 2951364 -199376983 + AT_rich Low_complexity Low_complexity 1 30 0 2105 101 10 7 chr4 2951571 2951867 -199376480 + AluSx SINE Alu 1 297 -15 1106 181 166 30 chr4 2952865 2953130 -199375217 + AluJo SINE Alu 2 302 0 619 149 44 0 chr4 2953025 2953139 -199375208 + AluJo/FRAM SINE Alu 193 311 -1 205 212 202 30 chr4 2955026 2955125 -199373222 + MIR3 SINE MIR 4 119 -89 2179 98 0 0 chr4 2955750 2956045 -199372302 - AluSg SINE Alu -15 295 1 2402 71 0 3 chr4 2958056 2958366 -199369981 + AluY SINE Alu 1 309 -2 2153 104 0 7 chr4 2958717 2959016 -199369331 - AluSx SINE Alu -14 298 2 291 248 191 0 chr4 2959285 2959390 -199368957 + MIR SINE MIR 136 260 -2 235 166 61 6 chr4 2959396 2959559 -199368788 + (TTA)n Simple_repeat Simple_repeat 3 174 0 488 68 21 88 chr4 2959573 2959765 -199368582 + (TTATA)n Simple_repeat Simple_repeat 1 179 0 383 173 16 54 chr4 2959765 2959950 -199368397 + (TATAA)n Simple_repeat Simple_repeat 2 179 0 181 138 0 0 chr4 2960022 2960051 -199368296 - MIR SINE MIR -121 141 113 346 236 181 31 chr4 2960772 2960899 -199367448 - MIR SINE MIR 0 262 117 292 273 13 0 chr4 2961227 2961304 -199367043 + MIR SINE MIR 56 133 -129 22 35 0 0 chr4 2961330 2961359 -199366988 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chr4 2961920 2961955 -199366392 + GC_rich Low_complexity Low_complexity 1 35 0 26 50 0 0 chr4 2962306 2962346 -199366001 + GC_rich Low_complexity Low_complexity 1 40 0 244 196 0 0 chr4 2962556 2962602 -199365745 + (CGG)n Simple_repeat Simple_repeat 3 48 0 3553 80 120 35 chr4 2963389 2963937 -199364410 + LTR61 LTR ERV1 1 595 0 605 142 31 63 chr4 2964245 2964372 -199363975 + FLAM_A SINE Alu 10 132 -10 2405 50 3 0 chr4 2964807 2965106 -199363241 + AluY SINE Alu 1 300 -11 2129 155 34 8 chr4 2965587 2965941 -199362406 + MLT1A1 LTR MaLR 1 363 -2 2101 110 10 3 chr4 2966075 2966374 -199361973 - AluSx SINE Alu -11 301 1 2138 81 3 24 chr4 2966468 2966766 -199361581 - AluSp SINE Alu -21 292 1 299 191 0 16 chr4 2967096 2967159 -199361188 - LTR67 LTR ERVL -39 518 457 373 364 112 5 chr4 2967215 2967402 -199360945 - L2 LINE L2 0 3313 3107 562 172 0 0 chr4 2967927 2968014 -199360333 - AluS SINE Alu -224 88 2 2379 80 3 3 chr4 2968018 2968352 -199359995 - AluSp SINE Alu 0 334 1 1526 145 16 46 chr4 2968352 2968656 -199359691 - AluJo SINE Alu -17 295 1 2224 88 0 0 chr4 2969053 2969347 -199359000 + AluSc SINE Alu 1 294 -15 2141 84 0 10 chr4 2969349 2969645 -199358702 - AluY SINE Alu -18 293 1 265 232 0 18 chr4 2970107 2970163 -199358184 + L2 LINE L2 3259 3313 0 2133 186 34 36 chr4 2970285 2970753 -199357594 - MLT1C LTR MaLR 0 467 1 1850 158 0 0 chr4 2971419 2971710 -199356637 - AluJb SINE Alu -21 291 1 1225 303 206 7 chr4 2971780 2972625 -199355722 + L2 LINE L2 1894 2906 -408 756 231 84 48 chr4 2972658 2972695 -199355652 + L2 LINE L2 3041 3075 -238 763 167 24 0 chr4 2972695 2972821 -199355526 - FLAM_A SINE Alu -4 129 1 756 231 84 48 chr4 2972821 2973034 -199355313 + L2 LINE L2 3075 3300 -13 192 40 0 0 chr4 2973034 2973059 -199355288 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 218 287 32 43 chr4 2973059 2973153 -199355194 + MIR SINE MIR 13 105 -157 * 370 233 125 33 chr4 2973151 2973271 -199355076 - L2 LINE L2 -1 3271 3141 370 209 97 75 chr4 2973290 2973354 -199354993 - MLT1J2 LTR MaLR -255 195 134 612 150 18 9 chr4 2973354 2973467 -199354880 - L1PB2 LINE L1 -1 6150 6037 370 209 97 75 chr4 2973467 2973536 -199354811 - MLT1J2 LTR MaLR -316 134 59 2260 77 0 0 chr4 2973698 2973984 -199354363 + AluSc SINE Alu 1 286 -23 1399 169 74 19 chr4 2974493 2974852 -199353495 + LTR54 LTR ERV1 1 404 -94 216 158 0 0 chr4 2974852 2974890 -199353457 + CT-rich Low_complexity Low_complexity 1 38 0 1136 171 46 0 chr4 2974899 2975116 -199353231 - AluJo SINE Alu 0 312 86 513 133 20 10 chr4 2975116 2975214 -199353133 + LTR54 LTR ERV1 410 508 -2 2139 116 6 0 chr4 2975303 2975614 -199352733 - AluSp SINE Alu 0 313 1 1055 265 41 32 chr4 2976151 2976563 -199351784 - MLT1J1 LTR MaLR 0 446 68 352 248 9 28 chr4 2976586 2976695 -199351652 - L1 LINE L1 -866 5280 5174 1348 178 15 118 chr4 2977338 2977486 -199350861 + AluJb SINE Alu 1 163 -139 1942 116 0 47 chr4 2977486 2977623 -199350724 + AluSx SINE Alu 1 143 -169 2182 88 17 3 chr4 2977623 2977920 -199350427 + AluY SINE Alu 1 301 -10 1942 116 0 47 chr4 2977920 2978102 -199350245 + AluSx SINE Alu 143 305 -7 2216 64 4 4 chr4 2978106 2978387 -199349960 + AluSp SINE Alu 1 281 -32 1348 178 15 118 chr4 2978387 2978564 -199349783 + AluJb SINE Alu 166 297 -5 221 329 12 0 chr4 2978789 2978874 -199349473 + L2 LINE L2 3185 3270 -2 188 250 132 13 chr4 2979110 2979186 -199349161 - MIR SINE MIR -17 245 161 8605 151 68 19 chr4 2979418 2980971 -199347376 - MER52A LTR ERV1 0 1755 50 227 333 16 0 chr4 2981542 2981605 -199346742 + L2 LINE L2 3209 3272 0 231 281 112 0 chr4 2981606 2981695 -199346652 - L2 LINE L2 -901 2413 2315 768 246 111 63 chr4 2982182 2982402 -199345945 + L2 LINE L2 2960 3203 -110 1958 121 48 58 chr4 2982402 2982781 -199345566 - THE1C LTR MaLR 0 375 1 768 246 111 63 chr4 2982781 2982894 -199345453 + L2 LINE L2 3203 3309 -4 856 151 0 0 chr4 2983494 2983620 -199344727 - FLAM_C SINE Alu -14 129 4 1994 80 42 7 chr4 2983807 2984095 -199344252 + AluY SINE Alu 1 298 -13 696 200 8 0 chr4 2984102 2984227 -199344120 + FLAM_A SINE Alu 1 126 -7 344 353 87 12 chr4 2984247 2984394 -199343953 + L1MC4a LINE L1 5722 5885 -1923 2101 79 48 3 chr4 2984394 2984685 -199343662 + AluY SINE Alu 1 304 -7 344 353 87 12 chr4 2984685 2984710 -199343637 + L1MC4a LINE L1 5885 5907 -1901 421 336 118 0 chr4 2984727 2984956 -199343391 - L1MC/D LINE L1 -2167 5641 5386 2245 80 3 3 chr4 2985032 2985332 -199343015 - AluSc SINE Alu -9 300 1 2356 148 69 29 chr4 2985615 2986095 -199342252 - L1MB8 LINE L1 -1 6177 5679 263 141 188 0 chr4 2986099 2986163 -199342184 - L1MB3 LINE L1 -7 6176 6101 881 189 12 0 chr4 2986168 2986337 -199342010 - L1M3 LINE L1 -388 5795 5625 983 97 8 0 chr4 2986337 2986471 -199341876 + AluSq/x SINE Alu 1 135 -178 2034 146 0 0 chr4 2986472 2986780 -199341567 + AluSx SINE Alu 1 308 -4 1569 163 62 14 chr4 2986783 2987150 -199341197 - L1M3 LINE L1 -550 5624 5241 582 118 20 29 chr4 2987150 2987274 -199341073 + AluSg/x SINE Alu 183 305 0 2092 76 14 7 chr4 2987581 2987872 -199340475 + AluSc SINE Alu 1 293 -16 898 131 0 115 chr4 2988087 2988278 -199340069 - AluSg/x SINE Alu -8 304 136 23 68 0 0 chr4 2988764 2988808 -199339539 + AT_rich Low_complexity Low_complexity 1 44 0 2281 105 0 0 chr4 2988922 2989235 -199339112 - AluSq SINE Alu 0 313 1 189 287 96 32 chr4 2989608 2989702 -199338645 + L2 LINE L2 3155 3254 -18 1629 193 15 46 chr4 2989715 2990108 -199338239 - MLT2C1 LTR ERVL 0 397 17 1979 130 0 3 chr4 2990190 2990490 -199337857 - AluSx SINE Alu -13 299 1 900 149 0 8 chr4 2990722 2990856 -199337491 - FLAM_A SINE Alu 0 133 1 1684 155 10 17 chr4 2991076 2991373 -199336974 + AluJo SINE Alu 1 295 -17 1583 197 0 10 chr4 2991377 2991666 -199336681 + AluJb SINE Alu 1 286 -26 2054 132 3 0 chr4 2992070 2992381 -199335966 + AluSx SINE Alu 1 312 0 699 215 17 29 chr4 2992381 2992542 -199335805 - MIR SINE MIR -50 212 52 1901 161 0 0 chr4 2992879 2993189 -199335158 - AluSx SINE Alu -2 310 1 483 142 14 177 chr4 2993395 2993457 -199334890 - MSTD LTR MaLR 0 396 368 3497 94 2 0 chr4 2993457 2993933 -199334414 - L1PA13 LINE L1 -3 6160 5684 483 142 14 177 chr4 2993933 2994009 -199334338 - MSTD LTR MaLR -28 368 281 979 249 50 80 chr4 2994009 2994065 -199334282 - LTR56 LTR ERV1 0 437 381 1912 120 17 40 chr4 2994065 2994366 -199333981 + AluSx SINE Alu 1 294 -18 979 249 50 80 chr4 2994366 2994757 -199333590 - LTR56 LTR ERV1 -56 381 9 600 200 140 93 chr4 2994774 2994951 -199333396 - MSTD LTR MaLR -114 282 91 2140 105 0 0 chr4 2994951 2995247 -199333100 + AluSx SINE Alu 1 296 -16 600 200 140 93 chr4 2995247 2995343 -199333004 - MSTD LTR MaLR -305 91 1 523 141 0 0 chr4 2995617 2995695 -199332652 + AluJ/FLAM SINE Alu 2 79 -233 707 225 16 16 chr4 2995889 2996076 -199332271 + L1 LINE L1 3773 3959 -2187 315 232 192 40 chr4 2996080 2996205 -199332142 - MSTC LTR MaLR -284 144 1 5442 186 24 60 chr4 2996240 2996306 -199332041 + L1ME LINE L1 3988 4055 -2135 2116 128 0 0 chr4 2996306 2996610 -199331737 + AluSg SINE Alu 1 304 -6 5442 186 24 60 chr4 2996610 2996756 -199331591 + L1ME LINE L1 4055 4205 -1985 2015 117 7 3 chr4 2996756 2997055 -199331292 + AluSx SINE Alu 3 302 -10 5442 186 24 60 chr4 2997055 2997746 -199330601 + L1ME LINE L1 4205 4825 -1365 1704 190 20 42 chr4 2997746 2998151 -199330196 - MSTD LTR MaLR 0 396 1 5442 186 24 60 chr4 2998151 2998669 -199329678 + L1ME LINE L1 4825 5360 -830 21 36 0 0 chr4 2998963 2998991 -199329356 + AT_rich Low_complexity Low_complexity 1 28 0 181 273 23 0 chr4 2999131 2999175 -199329172 + L2 LINE L2 3223 3267 -46 2228 96 6 16 chr4 2999234 2999546 -199328801 - AluSc SINE Alu 0 309 1 380 264 6 10 chr4 2999785 2999881 -199328466 + L1MC4 LINE L1 1995 6983 -1339 248 221 47 0 chr4 2999891 2999977 -199328370 + L1MC4 LINE L1 6614 6703 -1339 273 57 0 0 chr4 2999999 3000034 -199328313 + (CA)n Simple_repeat Simple_repeat 2 36 0 2178 88 3 3 chr4 3000048 3000345 -199328002 - AluSq SINE Alu -16 297 1 438 277 43 14 chr4 3000697 3000838 -199327509 + L1ME LINE L1 5517 5661 -460 976 195 0 61 chr4 3001000 3001231 -199327116 + AluJb SINE Alu 1 217 -95 * 1030 127 6 0 chr4 3001230 3001388 -199326959 + AluSg/x SINE Alu 131 289 -23 610 167 0 0 chr4 3001389 3001491 -199326856 + AluJb SINE Alu 135 236 -76 2679 147 39 30 chr4 3001590 3001870 -199326477 - L1MB2 LINE L1 -3 6168 5879 2007 121 3 3 chr4 3001870 3002168 -199326179 - AluSx SINE Alu -14 298 1 2679 147 39 30 chr4 3002168 3002396 -199325951 - L1MB2 LINE L1 -292 5879 5655 192 40 0 0 chr4 3002408 3002433 -199325914 + (GTTTG)n Simple_repeat Simple_repeat 5 29 0 1872 76 76 8 chr4 3002433 3002697 -199325650 - AluSq SINE Alu -31 282 1 2651 125 13 47 chr4 3003114 3003562 -199324785 - Tigger2a DNA MER2_type -1 433 1 193 286 98 18 chr4 3003977 3004089 -199324258 - L2 LINE L2 -579 2735 2615 1959 114 13 24 chr4 3004199 3004517 -199323830 + AluSx SINE Alu 1 312 0 201 287 96 11 chr4 3004651 3004745 -199323602 + MIR3 SINE MIR 60 161 -47 2357 91 3 3 chr4 3004776 3005074 -199323273 + AluSp SINE Alu 1 298 -15 1823 153 50 0 chr4 3005176 3005458 -199322889 + AluJb SINE Alu 1 296 -16 1026 196 0 21 chr4 3005714 3005908 -199322439 + AluJo SINE Alu 121 310 -2 647 240 112 11 chr4 3005924 3006103 -199322244 - MIR SINE MIR -63 199 3 1096 170 0 0 chr4 3006544 3006715 -199321632 + FAM SINE Alu 1 44 -5 577 316 14 28 chr4 3006984 3007199 -199321148 + MIR SINE MIR 47 258 -4 2196 98 7 3 chr4 3007200 3007497 -199320850 + AluSx SINE Alu 1 298 -14 2347 90 7 3 chr4 3007821 3008121 -199320226 + AluSg SINE Alu 1 301 -9 2339 82 0 0 chr4 3008887 3009205 -199319142 - AluSp SINE Alu 0 318 1 206 304 48 56 chr4 3009637 3009762 -199318585 - L3 LINE CR1 -28 1549 1426 862 128 0 0 chr4 3009978 3010095 -199318252 + FLAM_C SINE Alu 2 118 -15 28 29 0 0 chr4 3010095 3010130 -199318217 + AT_rich Low_complexity Low_complexity 1 35 0 257 274 174 26 chr4 3010589 3010779 -199317568 + MIR SINE MIR 12 229 -33 251 172 198 43 chr4 3011100 3011216 -199317131 + L1ME4a LINE L1 5982 6115 -6 320 272 44 33 chr4 3011222 3011402 -199316945 + L1MC5 LINE L1 7732 7913 -48 2262 95 0 14 chr4 3011537 3011831 -199316516 + AluSx SINE Alu 1 290 -22 847 147 0 0 chr4 3011836 3011952 -199316395 - FLAM_C SINE Alu -16 117 2 2089 82 36 52 chr4 3012430 3012735 -199315612 + AluSg SINE Alu 1 300 -10 1131 166 6 0 chr4 3012735 3012910 -199315437 + AluJb SINE Alu 134 309 -3 351 322 136 12 chr4 3013166 3013408 -199314939 + L2 LINE L2 2561 2832 -482 23 0 0 0 chr4 3013664 3013687 -199314660 + AT_rich Low_complexity Low_complexity 1 23 0 1492 242 98 68 chr4 3013841 3014258 -199314089 + L1MC4a LINE L1 3782 4185 -1961 853 132 0 29 chr4 3014258 3014394 -199313953 - FLAM_C SINE Alu -1 132 1 1492 242 98 68 chr4 3014394 3014572 -199313775 + L1MC4a LINE L1 4185 4356 -1790 815 160 0 0 chr4 3014572 3014697 -199313650 + FLAM_A SINE Alu 2 126 -7 1492 242 98 68 chr4 3014697 3014779 -199313568 + L1MC4a LINE L1 4356 4434 -1712 2341 100 0 3 chr4 3014779 3015080 -199313267 + AluSx SINE Alu 1 300 -12 1492 242 98 68 chr4 3015080 3015203 -199313144 + L1MC4a LINE L1 4434 4608 -1538 204 40 0 0 chr4 3015208 3015233 -199313114 + (TG)n Simple_repeat Simple_repeat 1 25 0 731 261 51 4 chr4 3015237 3015471 -199312876 + L1MC4a LINE L1 5301 5545 -617 2010 108 52 7 chr4 3016202 3016489 -199311858 - AluSx SINE Alu -12 300 1 352 239 14 0 chr4 3016886 3016957 -199311390 - MER2 DNA MER2_type -1 344 273 1314 147 20 12 chr4 3016992 3017244 -199311103 - MER2 DNA MER2_type -57 288 35 234 294 165 9 chr4 3018040 3018149 -199310198 + L2 LINE L2 3145 3270 -2 368 188 0 0 chr4 3018160 3018224 -199310123 - FLAM_A SINE Alu -68 64 1 1766 170 3 10 chr4 3018879 3019168 -199309179 - AluJo SINE Alu -21 291 5 334 243 37 19 chr4 3019963 3020070 -199308277 + L1MC4a LINE L1 5830 5938 -1870 391 391 41 10 chr4 3020175 3020372 -199307975 - L1MEc LINE L1 -5995 401 199 976 214 25 79 chr4 3020428 3020746 -199307601 - AluJo SINE Alu 0 302 2 2255 106 10 0 chr4 3020764 3021079 -199307268 + AluSx SINE Alu 1 318 0 533 285 189 48 chr4 3021083 3021174 -199307173 - L1MC4a LINE L1 -1436 6372 6295 2364 120 0 0 chr4 3021174 3021475 -199306872 + AluSx SINE Alu 1 301 -11 533 285 189 48 chr4 3021475 3021573 -199306774 - L1MC4a LINE L1 -1513 6295 6212 2604 36 3 10 chr4 3021573 3021876 -199306471 - AluY SINE Alu -10 301 1 533 285 189 48 chr4 3021876 3022166 -199306181 - L1MC4a LINE L1 -1596 6212 5824 1078 223 92 4 chr4 3022259 3022532 -199305815 - L1MC4a LINE L1 -2101 5707 5411 1003 105 0 0 chr4 3022633 3022766 -199305581 + FLAM_C SINE Alu 1 133 0 297 232 43 0 chr4 3022828 3022897 -199305450 - MIR SINE MIR -183 79 8 402 283 9 44 chr4 3023073 3023186 -199305161 - L2 LINE L2 0 3272 3164 1699 172 37 24 chr4 3023235 3023532 -199304815 - AluJb SINE Alu -11 301 1 376 281 70 12 chr4 3024331 3024502 -199303845 - MIR3 SINE MIR -19 189 9 698 177 0 0 chr4 3024831 3024961 -199303386 - L1MB7 LINE L1 -1 6183 6054 2226 125 0 0 chr4 3024961 3025258 -199303089 - AluSx SINE Alu -15 297 1 253 191 0 0 chr4 3025258 3025300 -199303047 - L1MB7 LINE L1 -293 5875 5834 528 173 29 29 chr4 3026618 3026722 -199301625 - L2 LINE L2 0 3313 3210 348 257 119 95 chr4 3026880 3027250 -199301097 - L2 LINE L2 -414 2900 2522 722 284 222 16 chr4 3027280 3028037 -199300310 - L2 LINE L2 -1683 1631 719 1314 106 22 0 chr4 3028388 3028568 -199299779 + AluSq SINE Alu 1 184 -129 471 76 0 0 chr4 3028569 3028635 -199299712 + AluSc SINE Alu 238 303 -6 471 236 19 0 chr4 3028857 3028963 -199299384 + MIR SINE MIR 107 214 -48 1491 185 18 78 chr4 3029127 3029289 -199299058 - MLT1A1 LTR MaLR 0 365 195 775 174 0 36 chr4 3029289 3029427 -199298920 + FLAM_C SINE Alu 1 133 0 1491 185 18 78 chr4 3029427 3029648 -199298699 - MLT1A1 LTR MaLR -170 195 5 2146 114 3 25 chr4 3029757 3030073 -199298274 - AluSc SINE Alu 0 309 1 266 241 167 19 chr4 3030116 3030224 -199298123 - L2 LINE L2 -7 3265 3142 377 202 131 20 chr4 3030512 3030611 -199297736 - MER58B DNA MER1_type 0 341 232 2336 65 41 0 chr4 3031164 3031454 -199296893 + AluY SINE Alu 1 302 -9 779 122 7 58 chr4 3031771 3031910 -199296437 - FLAM_C SINE Alu 0 133 2 971 190 28 6 chr4 3032130 3032309 -199296038 - AluJo SINE Alu -129 183 1 525 32 0 0 chr4 3033233 3033296 -199295051 + (TG)n Simple_repeat Simple_repeat 1 63 0 276 53 0 0 chr4 3033763 3033801 -199294546 + (TG)n Simple_repeat Simple_repeat 2 39 0 2374 90 0 10 chr4 3033827 3034128 -199294219 + AluSg SINE Alu 1 298 -12 2377 100 0 0 chr4 3035128 3035429 -199292918 + AluSx SINE Alu 1 301 -11 2446 109 0 0 chr4 3035610 3035923 -199292424 + AluSq SINE Alu 1 313 0 2110 123 0 0 chr4 3036355 3036666 -199291681 + AluSx SINE Alu 1 311 0 285 343 66 15 chr4 3038647 3038784 -199289563 + MIR SINE MIR 108 251 -11 4312 117 11 17 chr4 3039066 3039252 -199289095 + MER41B LTR ERV1 1 187 -448 1819 127 92 0 chr4 3039252 3039536 -199288811 + AluSx SINE Alu 1 310 -2 4312 117 11 17 chr4 3039536 3039988 -199288359 + MER41B LTR ERV1 187 635 0 735 108 0 0 chr4 3040328 3040430 -199287917 + U6 snRNA snRNA 1 102 -5 1808 119 79 0 chr4 3040577 3040854 -199287493 - AluSx SINE Alu -13 299 1 3951 159 99 38 chr4 3040888 3041699 -199286648 + MER21B LTR ERV1 3 862 -1 1867 224 54 17 chr4 3041709 3042227 -199286120 - MER72 LTR ERV1 -174 548 12 2900 118 18 18 chr4 3042341 3042775 -199285572 - MER57B LTR ERV1 0 434 1 1207 72 63 31 chr4 3042775 3042987 -199285360 - MER57B-int LTR ERV1 0 7537 7279 748 86 23 31 chr4 3042987 3043115 -199285232 - LTR54B LTR ERV1 -367 131 5 14282 96 72 48 chr4 3043115 3043156 -199285191 - MER57B-int LTR ERV1 -387 7150 7111 6322 113 17 42 chr4 3043156 3043257 -199285090 + LTR13 LTR ERVK 1 103 -851 2515 46 0 0 chr4 3043257 3043576 -199284771 + AluY SINE Alu 1 319 0 6322 113 17 42 chr4 3043576 3044451 -199283896 + LTR13 LTR ERVK 103 954 0 14282 96 72 48 chr4 3044451 3045369 -199282978 - MER57B-int LTR ERV1 -426 7111 6216 2257 120 0 0 chr4 3045369 3045669 -199282678 + AluSx SINE Alu 1 300 -12 14282 96 72 48 chr4 3045669 3046134 -199282213 - MER57B-int LTR ERV1 -1321 6216 5763 381 43 0 0 chr4 3046134 3046181 -199282166 + (CA)n Simple_repeat Simple_repeat 1 47 0 646 103 0 0 chr4 3046181 3046268 -199282079 - AluSg/x SINE Alu -18 294 208 14282 96 72 48 chr4 3046268 3047201 -199281146 - MER57B-int LTR ERV1 -1773 5764 4646 407 91 0 30 chr4 3047201 3047260 -199281087 - MER57B-int LTR ERV1 -3194 4343 4284 441 0 0 0 chr4 3047260 3047309 -199281038 + (TG)n Simple_repeat Simple_repeat 2 50 0 2216 99 7 0 chr4 3047309 3047592 -199280755 - AluSp SINE Alu -28 285 1 5103 121 61 32 chr4 3047607 3048476 -199279871 + MER57-int LTR ERV1 1478 2371 -5166 839 160 27 0 chr4 3048475 3048625 -199279722 + MER57-int LTR ERV1 2476 2629 -4908 * 1672 82 55 8 chr4 3048621 3048878 -199279469 + MER57-int LTR ERV1 2781 3049 -4488 3512 92 31 81 chr4 3048883 3048933 -199279414 + MER57-int LTR ERV1 3248 3299 -4517 2171 107 3 23 chr4 3048933 3049233 -199279114 + AluSx SINE Alu 1 294 -18 3512 92 31 81 chr4 3049233 3049478 -199278869 + MER57-int LTR ERV1 3299 3555 -4261 2231 135 0 0 chr4 3049478 3049789 -199278558 + AluSx SINE Alu 2 312 0 3512 92 31 81 chr4 3049789 3049981 -199278366 + MER57-int LTR ERV1 3555 3755 -4061 2335 96 7 3 chr4 3049981 3050284 -199278063 - AluSq SINE Alu -9 304 1 3512 92 31 81 chr4 3050284 3050603 -199277744 + MER57-int LTR ERV1 3755 4143 -3673 2471 68 21 21 chr4 3050601 3050931 -199277416 + MER57-int LTR ERV1 3914 4246 -3291 * 2348 110 0 0 chr4 3050931 3051239 -199277108 - AluSg SINE Alu -2 308 1 2471 68 21 21 chr4 3051239 3051293 -199277054 + MER57-int LTR ERV1 4245 4298 -3239 1463 107 202 4 chr4 3051293 3051536 -199276811 + AluSg1 SINE Alu 1 291 -18 280 98 0 0 chr4 3051538 3051579 -199276768 - MER57B-int LTR ERV1 -6151 1386 1346 * 1299 86 0 0 chr4 3051573 3051748 -199276599 - MER57B-int LTR ERV1 -6570 967 793 * 4521 98 24 3 chr4 3051746 3052407 -199275940 - MER57B-int LTR ERV1 -6860 677 3 2718 113 61 0 chr4 3052408 3052816 -199275531 - MER57B LTR ERV1 -1 433 1 1420 153 92 98 chr4 3052969 3053256 -199275091 - L1MB3 LINE L1 0 6183 5897 2473 73 0 0 chr4 3053256 3053556 -199274791 - AluY SINE Alu -7 304 5 1420 153 92 98 chr4 3053556 3053668 -199274679 - L1MB3 LINE L1 -286 5897 5786 4293 107 5 45 chr4 3053668 3053851 -199274496 - MER41B LTR ERV1 0 635 446 2314 74 40 0 chr4 3053851 3054150 -199274197 - AluY SINE Alu 0 311 1 4293 107 5 45 chr4 3054150 3054272 -199274075 - MER41B LTR ERV1 -189 446 321 2303 80 3 0 chr4 3054272 3054571 -199273776 + AluSp SINE Alu 1 300 -13 4293 107 5 45 chr4 3054571 3054923 -199273424 - MER41B LTR ERV1 -314 321 1 1809 171 0 0 chr4 3054944 3055248 -199273099 - AluSx SINE Alu -8 304 1 1758 221 53 22 chr4 3055265 3055677 -199272670 + MER57B LTR ERV1 1 425 -9 262 200 36 0 chr4 3055682 3055737 -199272610 - L1MB3 LINE L1 -641 5542 5486 * 280 232 70 35 chr4 3055715 3055818 -199272529 - L1ME LINE L1 -286 5835 5724 1968 92 67 7 chr4 3055818 3056101 -199272246 - AluSx SINE Alu -12 300 1 280 232 70 35 chr4 3056101 3056139 -199272208 - L1ME LINE L1 -397 5724 5689 883 107 0 29 chr4 3056146 3056286 -199272061 - AluSg/x SINE Alu -10 302 167 232 331 89 8 chr4 3056375 3056499 -199271848 - L1ME LINE L1 -519 5602 5469 501 216 82 0 chr4 3056562 3056659 -199271688 - AluJo SINE Alu -24 288 184 419 147 13 27 chr4 3056662 3056737 -199271610 - MER4A LTR ERV1 -4 660 587 2864 182 16 56 chr4 3056737 3057358 -199270989 + LTR9 LTR ERV1 1 596 -16 1430 135 149 34 chr4 3057381 3057629 -199270718 - MER4A LTR ERV1 -74 590 372 2276 83 0 3 chr4 3057629 3057931 -199270416 + AluSq SINE Alu 1 301 -12 2249 86 0 13 chr4 3057931 3058246 -199270101 + AluY SINE Alu 1 311 0 1430 135 149 34 chr4 3058246 3058292 -199270055 - MER4A LTR ERV1 -291 373 261 1101 173 5 37 chr4 3058348 3058562 -199269785 - AluJo SINE Alu -105 207 1 615 179 0 34 chr4 3059946 3060063 -199268284 - FLAM_C SINE Alu -24 119 7 634 228 152 0 chr4 3060122 3060280 -199268067 + MER21B LTR ERV1 5 186 -677 2171 120 0 0 chr4 3060329 3060628 -199267719 - AluSg SINE Alu -11 299 1 780 272 86 30 chr4 3060735 3061326 -199267021 + L1M4 LINE L1 3321 3944 -2202 1720 90 98 22 chr4 3061469 3061746 -199266601 - AluSg SINE Alu -7 303 6 2022 196 56 0 chr4 3061779 3062172 -199266175 - MER47B DNA MER2_type -2 416 2 2132 92 0 0 chr4 3062414 3062698 -199265649 - AluSc SINE Alu -21 288 5 507 282 89 81 chr4 3062948 3063641 -199264706 + L1MEd LINE L1 580 1255 -4864 720 308 36 17 chr4 3064103 3064258 -199264089 + L1MEd LINE L1 1311 1462 -4848 2531 55 0 3 chr4 3064258 3064568 -199263779 + AluY SINE Alu 1 309 -2 720 308 36 17 chr4 3064568 3064825 -199263522 + L1MEd LINE L1 1462 1731 -4579 1956 146 0 0 chr4 3064888 3065189 -199263158 - AluSx SINE Alu -11 301 1 344 349 31 52 chr4 3065202 3065385 -199262962 + L1MEd LINE L1 1822 2001 -4309 1885 128 0 33 chr4 3065385 3065691 -199262656 - AluSx SINE Alu -16 296 1 344 349 31 52 chr4 3065691 3065736 -199262611 + L1MEd LINE L1 2001 2045 -4265 366 245 39 10 chr4 3066391 3066493 -199261854 - L1ME4a LINE L1 -19 6102 5998 2193 83 3 0 chr4 3066530 3066820 -199261527 - AluSx SINE Alu -16 296 6 1040 258 124 34 chr4 3067396 3067838 -199260509 - MLT1J LTR MaLR -13 498 17 2126 156 48 0 chr4 3067849 3068221 -199260126 + MLT1B LTR MaLR 1 390 0 1470 236 121 23 chr4 3068317 3068788 -199259559 - MLT1E LTR MaLR -69 524 8 2139 98 10 3 chr4 3068862 3069158 -199259189 - AluSx SINE Alu -9 303 6 770 144 24 8 chr4 3069172 3069297 -199259050 - FRAM SINE Alu -22 154 28 194 209 0 31 chr4 3070294 3070423 -199257924 + (CCCCG)n Simple_repeat Simple_repeat 5 129 0 197 62 0 31 chr4 3070458 3070490 -199257857 + (CCCCG)n Simple_repeat Simple_repeat 4 34 0 377 275 0 53 chr4 3070501 3070690 -199257657 + (CCCCG)n Simple_repeat Simple_repeat 1 179 0 28 61 0 0 chr4 3070839 3070888 -199257459 + GC_rich Low_complexity Low_complexity 1 49 0 528 16 0 0 chr4 3071112 3071173 -199257174 + (CAG)n Simple_repeat Simple_repeat 1 61 0 261 198 0 0 chr4 3071173 3071254 -199257093 + (CCG)n Simple_repeat Simple_repeat 3 83 0 183 100 0 0 chr4 3071256 3071286 -199257061 + (CCCCCG)n Simple_repeat Simple_repeat 4 33 0 233 224 13 66 chr4 3072912 3072988 -199255359 + Tigger2 DNA MER2_type 2414 2485 -233 2094 109 0 0 chr4 3073133 3073418 -199254929 + AluSx SINE Alu 6 290 -22 2071 119 0 0 chr4 3073664 3073950 -199254397 - AluSg SINE Alu -24 286 1 21 57 0 0 chr4 3074003 3074038 -199254309 + AT_rich Low_complexity Low_complexity 1 35 0 737 233 93 23 chr4 3074457 3074672 -199253675 - L2 LINE L2 0 3313 3084 23 0 0 0 chr4 3074688 3074711 -199253636 + AT_rich Low_complexity Low_complexity 1 23 0 416 98 16 0 chr4 3074714 3074775 -199253572 - U7 snRNA snRNA 0 63 2 224 59 29 0 chr4 3074787 3074821 -199253526 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 1616 154 0 45 chr4 3074828 3074968 -199253379 - AluSx SINE Alu -39 273 151 2238 67 0 54 chr4 3074968 3075283 -199253064 - AluY SINE Alu -13 298 1 1616 154 0 45 chr4 3075283 3075428 -199252919 - AluSx SINE Alu -161 151 1 202 191 24 0 chr4 3075433 3075475 -199252872 - L2 LINE L2 -239 3074 3032 840 179 6 23 chr4 3075480 3075653 -199252694 - FRAM SINE Alu -6 170 1 1039 266 79 40 chr4 3075654 3076156 -199252191 - L2 LINE L2 -277 3036 2503 2138 126 0 0 chr4 3076326 3076627 -199251720 - AluSq SINE Alu -12 301 1 3797 184 37 1 chr4 3076658 3077451 -199250896 - L1M4 LINE L1 -809 5337 4517 1300 183 70 4 chr4 3077451 3077724 -199250623 - MER58B DNA MER1_type -8 333 43 2325 74 6 3 chr4 3077779 3078090 -199250257 - AluSp SINE Alu -1 312 1 367 296 127 55 chr4 3078144 3078397 -199249950 - L1ME4a LINE L1 -11 6110 5840 278 304 236 20 chr4 3078750 3078898 -199249449 + MER5A DNA MER1_type 10 189 0 473 267 182 15 chr4 3079143 3079420 -199248927 - L2 LINE L2 -209 3104 2784 1409 170 24 35 chr4 3079471 3079760 -199248587 + AluJo SINE Alu 1 286 -26 459 0 0 0 chr4 3079763 3079814 -199248533 + (CA)n Simple_repeat Simple_repeat 2 52 0 2624 149 99 62 chr4 3079854 3080418 -199247929 + L1MD2 LINE L1 5484 6068 -291 817 147 0 0 chr4 3080419 3080555 -199247792 - AluSg/x SINE Alu -1 311 176 2079 122 0 3 chr4 3080632 3080928 -199247419 + AluSx SINE Alu 1 295 -17 2281 88 0 3 chr4 3080957 3081263 -199247084 + AluY SINE Alu 1 305 -6 1948 104 24 0 chr4 3081370 3081658 -199246689 - AluSx SINE Alu -17 295 1 424 294 28 28 chr4 3082317 3082494 -199245853 - MER104 DNA Tc2 -3 177 1 349 290 65 0 chr4 3082500 3082607 -199245740 + MIR SINE MIR 32 145 -117 1506 202 10 10 chr4 3082614 3082921 -199245426 + AluJo SINE Alu 1 307 -5 180 381 48 0 chr4 3083013 3083097 -199245250 + L2 LINE L2 3185 3272 0 2059 94 49 0 chr4 3084072 3084360 -199243987 - AluSp SINE Alu -9 304 3 2144 83 41 0 chr4 3084409 3084699 -199243648 - AluY SINE Alu -9 302 1 978 204 102 32 chr4 3084707 3084991 -199243356 - L1MB3 LINE L1 -1 6182 5879 351 288 141 18 chr4 3085245 3085408 -199242939 + MIR SINE MIR 51 233 -29 2367 68 0 0 chr4 3085485 3085778 -199242569 - AluY SINE Alu -18 293 1 232 298 0 18 chr4 3086498 3086555 -199241792 - MER5A DNA MER1_type -3 186 131 435 286 52 75 chr4 3086839 3087052 -199241295 + L1ME LINE L1 4474 4681 -1465 2043 148 0 0 chr4 3087055 3087366 -199240981 + AluSq SINE Alu 1 311 -2 586 205 8 33 chr4 3087829 3087951 -199240396 + MLT1A2 LTR MaLR 256 374 0 296 274 69 10 chr4 3088046 3088148 -199240199 + L1ME LINE L1 5552 5659 -462 1933 108 7 7 chr4 3088259 3088545 -199239802 - AluSg SINE Alu -24 286 1 1580 174 17 7 chr4 3088619 3088907 -199239440 - AluJo SINE Alu -21 291 1 2172 251 68 22 chr4 3088945 3089591 -199238756 + L1MEc LINE L1 1 676 -5720 305 248 74 33 chr4 3089585 3089706 -199238641 + L1MEc LINE L1 1847 1972 -4424 * 1200 204 59 64 chr4 3089706 3090094 -199238253 + MLT1D LTR MaLR 1 386 -119 8494 59 7 172 chr4 3090138 3091766 -199236581 - SVA Other Other 0 1386 28 566 156 15 82 chr4 3091769 3091904 -199236443 + MLT1D LTR MaLR 377 502 -3 420 242 129 16 chr4 3091904 3092090 -199236257 + L1MEc LINE L1 1985 2191 -4205 3901 247 58 31 chr4 3092099 3093062 -199235285 + L1MEc LINE L1 2179 3115 -3100 1612 198 0 0 chr4 3093062 3093355 -199234992 + AluJo SINE Alu 1 293 -19 3901 247 58 31 chr4 3093355 3093578 -199234769 + L1MEc LINE L1 3115 3331 -2884 2197 113 0 0 chr4 3093578 3093879 -199234468 + AluSx SINE Alu 4 304 -8 3901 247 58 31 chr4 3093879 3094045 -199234302 + L1MEc LINE L1 3331 3568 -2647 1001 159 246 10 chr4 3094050 3094359 -199233988 + Charlie5 DNA MER1_type 2243 2624 0 1425 158 54 28 chr4 3095180 3095497 -199232850 - L1MC3 LINE L1 0 7785 7461 183 289 0 0 chr4 3096371 3096416 -199231931 + MIR SINE MIR 106 150 -112 1825 131 3 3 chr4 3096971 3097254 -199231093 - AluJb SINE Alu -29 283 1 21 0 0 0 chr4 3099413 3099434 -199228913 + AT_rich Low_complexity Low_complexity 1 21 0 2429 62 0 3 chr4 3099447 3099751 -199228596 - AluSp SINE Alu -10 303 1 28 29 0 0 chr4 3100125 3100160 -199228187 + AT_rich Low_complexity Low_complexity 1 35 0 1060 117 12 0 chr4 3100170 3100332 -199228015 - L1MA2 LINE L1 -7 6297 6134 630 137 21 0 chr4 3100333 3100428 -199227919 - AluSg/x SINE Alu -20 289 193 730 45 0 0 chr4 3100434 3100523 -199227824 - AluS SINE Alu -223 90 2 2161 101 7 0 chr4 3100557 3100855 -199227492 + AluSx SINE Alu 5 304 -8 1538 190 37 0 chr4 3100858 3101158 -199227189 + AluJb SINE Alu 1 311 -1 257 191 0 0 chr4 3101176 3101223 -199227124 - L1MA2 LINE L1 -188 6116 6070 536 262 126 78 chr4 3101714 3102008 -199226339 + L2 LINE L2 3005 3312 -1 1560 161 57 0 chr4 3102314 3102593 -199225754 + AluJb SINE Alu 1 295 -17 261 328 41 25 chr4 3102716 3102838 -199225509 + L2 LINE L2 2671 2794 -520 201 341 78 23 chr4 3102845 3102974 -199225373 + L2 LINE L2 2926 3061 -252 260 327 103 33 chr4 3104234 3104448 -199223899 + MIR SINE MIR 34 262 0 386 198 83 87 chr4 3104976 3104989 -199223358 - HAL1 LINE L1 -4 2503 2491 1607 188 0 33 chr4 3104989 3105293 -199223054 + AluJo SINE Alu 1 294 -18 386 198 83 87 chr4 3105293 3105440 -199222907 - HAL1 LINE L1 -16 2491 2341 2264 91 7 0 chr4 3105440 3105749 -199222598 - AluSp SINE Alu 0 312 2 386 198 83 87 chr4 3105749 3105828 -199222519 - HAL1 LINE L1 -166 2341 2263 934 274 151 47 chr4 3106388 3106984 -199221363 - HAL1 LINE L1 -408 2099 1442 583 228 56 28 chr4 3107003 3107183 -199221164 - HAL1 LINE L1 -1145 1362 1178 969 191 12 0 chr4 3107241 3107409 -199220938 - AluJo/FRAM SINE Alu -8 304 135 2214 114 0 0 chr4 3107409 3107706 -199220641 - AluSx SINE Alu -2 310 14 517 276 98 91 chr4 3107722 3108428 -199219919 - HAL1 LINE L1 -1796 711 1 2001 257 70 20 chr4 3108507 3109211 -199219136 - L1ME3A LINE L1 -16 6154 5416 2236 128 0 0 chr4 3109557 3109855 -199218492 - AluSx SINE Alu -14 298 1 3763 109 0 4 chr4 3110118 3110631 -199217716 - MER9 LTR ERVK 0 511 1 394 294 9 0 chr4 3112770 3112879 -199215468 - L2 LINE L2 -1 3271 3162 306 206 41 0 chr4 3113194 3113267 -199215080 + Charlie7 DNA MER1_type 379 454 -2158 184 216 0 0 chr4 3113283 3113320 -199215027 + MIR SINE MIR 201 237 -25 828 224 114 93 chr4 3113615 3113781 -199214566 - L1MC5 LINE L1 -121 7840 7679 1696 190 17 0 chr4 3113781 3114070 -199214277 + AluJb SINE Alu 1 294 -18 828 224 114 93 chr4 3114070 3114462 -199213885 - L1MC5 LINE L1 -282 7679 7270 314 311 57 0 chr4 3115187 3115293 -199213054 + HAL1 LINE L1 1582 1693 -814 237 286 65 32 chr4 3115886 3116040 -199212307 + HAL1b LINE L1 753 911 -437 917 240 45 0 chr4 3116089 3116289 -199212058 - MER58A DNA MER1_type -11 213 5 848 180 51 0 chr4 3116410 3116588 -199211759 + MER53 DNA DNA 1 187 -2 257 150 0 0 chr4 3116641 3116681 -199211666 + MER1B DNA MER1_type 1 40 -297 2258 133 18 3 chr4 3116681 3117013 -199211334 + MER1B DNA MER1_type 1 337 0 1434 158 74 37 chr4 3117819 3118116 -199210231 + AluJb SINE Alu 1 308 -4 770 223 150 0 chr4 3119423 3119616 -199208731 - MER58A DNA MER1_type -2 222 1 1092 168 59 25 chr4 3119707 3119742 -199208605 + AluJo SINE Alu 85 117 -195 180 0 0 0 chr4 3119742 3119762 -199208585 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 1092 168 59 25 chr4 3119762 3119928 -199208419 + AluJo SINE Alu 117 293 -19 29 60 0 0 chr4 3121466 3121516 -199206831 + AT_rich Low_complexity Low_complexity 1 50 0 1921 125 0 58 chr4 3122266 3122579 -199205768 - AluSx SINE Alu -17 295 1 24 53 0 0 chr4 3122767 3122805 -199205542 + AT_rich Low_complexity Low_complexity 1 38 0 242 120 220 0 chr4 3123856 3123906 -199204441 - AluSc SINE Alu 0 299 239 2341 109 0 0 chr4 3123907 3124209 -199204138 + AluSx SINE Alu 1 302 -10 1792 140 0 0 chr4 3124209 3124458 -199203889 - AluSx SINE Alu -62 250 1 22 0 0 0 chr4 3124721 3124743 -199203604 + AT_rich Low_complexity Low_complexity 1 22 0 2361 196 73 14 chr4 3124984 3125582 -199202765 - L1MB3 LINE L1 -7 6176 5548 1554 159 24 57 chr4 3129428 3129724 -199198623 + AluJb SINE Alu 2 287 -25 23 0 0 0 chr4 3129746 3129769 -199198578 + AT_rich Low_complexity Low_complexity 1 23 0 1852 163 27 0 chr4 3130947 3131247 -199197100 - AluJo SINE Alu -4 308 1 527 128 0 13 chr4 3131483 3131561 -199196786 + AluSc SINE Alu 216 292 -17 458 236 222 22 chr4 3132766 3132991 -199195356 - L1ME4a LINE L1 -16 6105 5836 2133 104 49 0 chr4 3133143 3133431 -199194916 - AluSg SINE Alu -8 302 1 1368 194 73 60 chr4 3133452 3133656 -199194691 - L1MB7 LINE L1 0 6178 5978 2268 79 7 0 chr4 3133656 3133934 -199194413 + AluSx SINE Alu 15 294 -18 1368 194 73 60 chr4 3133934 3134239 -199194108 - L1MB7 LINE L1 -200 5978 5628 677 190 12 0 chr4 3134291 3134454 -199193893 + CT-rich Low_complexity Low_complexity 4 168 0 1479 108 33 21 chr4 3134465 3134706 -199193641 - L1PB3 LINE L1 0 6154 5911 1984 146 7 10 chr4 3134830 3135138 -199193209 - AluSx SINE Alu -5 307 1 2060 145 3 0 chr4 3135418 3135722 -199192625 - AluSx SINE Alu -7 305 1 2123 118 3 25 chr4 3136198 3136513 -199191834 + AluSg SINE Alu 1 308 -2 1899 144 6 6 chr4 3137705 3138017 -199190330 + AluSx SINE Alu 1 312 0 27 29 0 0 chr4 3138522 3138556 -199189791 + AT_rich Low_complexity Low_complexity 1 34 0 2415 99 0 0 chr4 3139379 3139691 -199188656 + AluSx SINE Alu 1 312 0 2499 83 3 6 chr4 3139813 3140127 -199188220 - AluSp SINE Alu 0 313 1 310 250 177 39 chr4 3140165 3140397 -199187950 + L1ME4a LINE L1 5732 5995 -126 403 160 75 11 chr4 3140403 3140497 -199187850 + L1ME4a LINE L1 6021 6120 -1 2217 128 0 0 chr4 3140542 3140840 -199187507 - AluSg SINE Alu -12 298 1 901 299 46 46 chr4 3142280 3142801 -199185546 - ERVL LTR ERVL -351 5413 4893 1879 141 3 46 chr4 3144598 3144740 -199183607 + AluSx SINE Alu 5 129 -183 2539 48 0 3 chr4 3144740 3145032 -199183315 + AluY SINE Alu 1 291 -20 1879 141 3 46 chr4 3145032 3145195 -199183152 + AluSx SINE Alu 129 297 -15 279 266 0 0 chr4 3145350 3145414 -199182933 - MER3 DNA MER1_type -131 78 15 2195 118 0 32 chr4 3145519 3145832 -199182515 - AluSq SINE Alu -10 303 1 913 236 5 5 chr4 3146399 3146594 -199181753 + MER3 DNA MER1_type 15 209 0 198 191 0 0 chr4 3146903 3146945 -199181402 + (CATATA)n Simple_repeat Simple_repeat 3 44 0 1884 112 26 59 chr4 3146959 3146979 -199181368 + MER1B DNA MER1_type 47 66 -2646 2208 88 0 11 chr4 3146979 3147294 -199181053 + AluY SINE Alu 1 312 0 1884 112 26 59 chr4 3147294 3147383 -199180964 + MER1B DNA MER1_type 66 156 -2556 1700 116 100 107 chr4 3147383 3147814 -199180533 - MSTA LTR MaLR 0 428 1 1884 112 26 59 chr4 3147814 3148005 -199180342 + MER1B DNA MER1_type 156 339 0 217 200 60 0 chr4 3148006 3148056 -199180291 + (CATATA)n Simple_repeat Simple_repeat 6 58 0 210 288 34 0 chr4 3148067 3148126 -199180221 + L2 LINE L2 2569 2629 -685 23 0 0 0 chr4 3148140 3148163 -199180184 + AT_rich Low_complexity Low_complexity 1 23 0 1016 168 7 0 chr4 3148163 3148318 -199180029 - AluJb SINE Alu -23 289 134 2378 86 0 3 chr4 3148318 3148622 -199179725 - AluSg SINE Alu -7 303 1 972 219 129 4 chr4 3148626 3148905 -199179442 - L1MB8 LINE L1 -6 6172 5859 1610 93 4 31 chr4 3148950 3149175 -199179172 - AluSc SINE Alu -90 219 1 1084 168 13 5 chr4 3149267 3149573 -199178774 - MLT1A1 LTR MaLR 0 374 1 300 228 78 5 chr4 3149753 3149842 -199178505 + MIR SINE MIR 48 140 -68 1768 151 34 7 chr4 3149865 3150156 -199178191 + AluJo SINE Alu 1 299 -13 184 0 0 88 chr4 3150474 3150508 -199177839 + (TTTTTG)n Simple_repeat Simple_repeat 2 32 0 2154 105 0 14 chr4 3151426 3151749 -199176598 - AluY SINE Alu 0 319 1 1398 117 77 55 chr4 3151755 3151824 -199176523 - L1MA8 LINE L1 -1 6290 6224 1889 137 0 56 chr4 3151824 3152145 -199176202 + AluSg SINE Alu 1 303 -7 1398 117 77 55 chr4 3152145 3152349 -199175998 - L1MA8 LINE L1 -67 6224 6011 2201 105 14 0 chr4 3152358 3152644 -199175703 - AluSx SINE Alu -22 290 1 327 254 70 56 chr4 3153614 3153756 -199174591 - MER68 LTR ERV1 -66 496 353 789 158 30 8 chr4 3153768 3153901 -199174446 - MER68 LTR ERV1 -310 252 117 424 255 178 66 chr4 3153965 3154214 -199174133 - L1M4 LINE L1 -1095 5051 4744 1716 147 34 0 chr4 3154214 3154507 -199173840 - AluJo SINE Alu -9 303 1 424 255 178 66 chr4 3154507 3154634 -199173713 - L1M4 LINE L1 -1402 4744 4633 226 347 32 0 chr4 3154639 3154734 -199173613 - L1M4 LINE L1 -1567 4579 4482 37335 95 10 12 chr4 3157145 3163296 -199165051 - L1PA7 LINE L1 0 6154 11 1932 131 0 3 chr4 3163305 3163595 -199164752 - AluSg SINE Alu -21 289 1 847 151 19 25 chr4 3164927 3165086 -199163261 + AluJb SINE Alu 110 267 -45 3461 226 63 79 chr4 3165099 3165231 -199163116 - L1MEc LINE L1 -4963 1433 1300 2347 87 0 0 chr4 3165231 3165542 -199162805 - AluY SINE Alu 0 311 1 3461 226 63 79 chr4 3165542 3165801 -199162546 - L1MEc LINE L1 -5096 1300 1039 2077 125 7 0 chr4 3165801 3166098 -199162249 - AluSx SINE Alu -13 299 1 3461 226 63 79 chr4 3166098 3167137 -199161210 - L1MEc LINE L1 -5357 1039 24 200 309 125 44 chr4 3167140 3167276 -199161071 + L2 LINE L2 3117 3263 -9 2075 113 3 19 chr4 3167683 3168001 -199160346 - AluSq SINE Alu 0 313 1 272 348 8 59 chr4 3168196 3168314 -199160033 + L2 LINE L2 3202 3313 0 2427 53 0 10 chr4 3169893 3170195 -199158152 - AluY SINE Alu -12 299 1 183 80 0 0 chr4 3171141 3171166 -199157181 + (TTTC)n Simple_repeat Simple_repeat 3 27 0 2408 68 0 0 chr4 3172240 3172551 -199155796 - AluY SINE Alu 0 311 1 191 258 103 72 chr4 3174140 3174237 -199154110 + MIR SINE MIR 33 132 -76 297 56 0 0 chr4 3174973 3175009 -199153338 - U2 snRNA snRNA -152 36 1 210 71 0 0 chr4 3175813 3175841 -199152506 + (TG)n Simple_repeat Simple_repeat 2 29 0 245 297 11 0 chr4 3175856 3175947 -199152400 + (TG)n Simple_repeat Simple_repeat 2 93 0 299 327 0 0 chr4 3175962 3176112 -199152235 + (TG)n Simple_repeat Simple_repeat 2 151 0 223 221 0 29 chr4 3177020 3177088 -199151259 + G-rich Low_complexity Low_complexity 1 66 0 2057 107 3 20 chr4 3177106 3177406 -199150941 - AluSx SINE Alu -17 295 1 214 304 111 35 chr4 3178842 3179013 -199149334 - MIR SINE MIR -71 191 8 249 33 0 0 chr4 3179097 3179127 -199149220 + (TTTCC)n Simple_repeat Simple_repeat 1 30 0 1524 169 18 14 chr4 3179127 3179406 -199148941 - AluJb SINE Alu -32 280 1 670 290 238 30 chr4 3180124 3181601 -199146746 - L2 LINE L2 -39 3274 1466 232 194 32 32 chr4 3181744 3181806 -199146541 + L1ME4a LINE L1 5724 5785 -379 1472 153 102 4 chr4 3181855 3182130 -199146217 + AluJb SINE Alu 1 302 -10 330 115 0 51 chr4 3182135 3182213 -199146134 + (GGAA)n Simple_repeat Simple_repeat 4 77 0 314 335 92 13 chr4 3182450 3182602 -199145745 + L1ME4a LINE L1 5952 6115 -6 506 191 16 165 chr4 3182963 3183063 -199145284 - MER5A DNA MER1_type -24 165 52 2239 78 0 38 chr4 3183063 3183383 -199144964 - AluY SINE Alu -3 308 1 2062 90 0 0 chr4 3183383 3183660 -199144687 - AluY SINE Alu -15 296 20 506 191 16 165 chr4 3183660 3183752 -199144595 - MER5A DNA MER1_type -135 54 1 416 269 77 13 chr4 3184362 3184518 -199143829 + MER97b DNA MER1_type? 14 179 -874 203 186 17 85 chr4 3184968 3185027 -199143320 - MIR SINE MIR -119 143 89 3032 133 64 2 chr4 3185468 3185966 -199142381 + L1MB3 LINE L1 5612 6140 -43 1527 188 31 0 chr4 3185967 3186260 -199142087 + AluJb SINE Alu 1 302 -10 1628 149 26 36 chr4 3186286 3186594 -199141753 + AluJo SINE Alu 1 305 -7 1127 135 214 44 chr4 3186679 3186931 -199141416 + AluJo SINE Alu 1 295 -7 318 250 0 0 chr4 3186950 3187014 -199141333 + HAL1 LINE L1 1816 1879 -628 2340 77 10 3 chr4 3187385 3187696 -199140651 - AluSp SINE Alu 0 313 1 263 260 35 75 chr4 3187752 3187925 -199140422 + HAL1b LINE L1 746 911 -437 357 289 100 22 chr4 3188097 3188277 -199140070 - MLT1K LTR MaLR 0 588 395 1334 208 0 36 chr4 3188299 3188602 -199139745 - AluJo SINE Alu -20 292 1 825 241 45 0 chr4 3189844 3190043 -199138304 + MER3 DNA MER1_type 2 209 0 587 271 105 22 chr4 3191856 3192085 -199136262 - MLT1J2 LTR MaLR 0 450 203 1826 164 0 7 chr4 3192679 3192978 -199135369 + AluJb SINE Alu 1 297 -15 642 298 49 27 chr4 3193793 3194018 -199134329 - MIR SINE MIR -19 243 14 2109 126 3 0 chr4 3194440 3194749 -199133598 - AluSx SINE Alu -2 310 1 2172 88 10 0 chr4 3195485 3195781 -199132566 + AluSq SINE Alu 1 299 -14 2153 117 0 3 chr4 3197471 3197778 -199130569 + AluSx SINE Alu 1 306 -6 360 244 352 0 chr4 3197990 3198166 -199130181 - MER5C DNA MER1_type -2 322 85 626 271 128 44 chr4 3198726 3198954 -199129393 - L1ME1 LINE L1 -1 6165 5891 1431 177 37 31 chr4 3198954 3199248 -199129099 + AluJo SINE Alu 1 296 -16 626 271 128 44 chr4 3199248 3199403 -199128944 - L1ME1 LINE L1 -275 5891 5750 30 17 0 34 chr4 3200746 3200772 -199127575 + AT_rich Low_complexity Low_complexity 1 26 -31 672 202 8 8 chr4 3200772 3200901 -199127446 + FLAM_C SINE Alu 3 131 -2 30 17 0 34 chr4 3200901 3200912 -199127435 + AT_rich Low_complexity Low_complexity 26 36 -21 1542 173 3 53 chr4 3200912 3201212 -199127135 + AluJo SINE Alu 3 287 -15 30 17 0 34 chr4 3201212 3201232 -199127115 + AT_rich Low_complexity Low_complexity 36 57 0 267 221 104 52 chr4 3201326 3201480 -199126867 - L1ME4a LINE L1 -5 6116 5955 1301 153 35 9 chr4 3201784 3202013 -199126334 + MER46A DNA MER2_type 2 236 0 28 48 0 0 chr4 3202128 3202170 -199126177 + AT_rich Low_complexity Low_complexity 1 42 0 2325 81 0 7 chr4 3207120 3207428 -199120919 - AluSx SINE Alu -6 306 1 21 36 0 0 chr4 3207896 3207924 -199120423 + AT_rich Low_complexity Low_complexity 1 28 0 27 29 0 0 chr4 3208368 3208402 -199119945 + AT_rich Low_complexity Low_complexity 1 34 0 715 297 50 5 chr4 3209611 3209830 -199118517 - MIR SINE MIR -16 246 18 225 354 0 0 chr4 3210409 3210491 -199117856 - L2 LINE L2 -9 3304 3223 236 321 104 19 chr4 3211734 3211840 -199116507 + L2 LINE L2 3199 3313 0 258 288 88 40 chr4 3212634 3212759 -199115588 + MIR SINE MIR 132 262 0 2688 7 0 0 chr4 3212968 3213264 -199115083 + AluYa5 SINE Alu 1 296 -15 2356 85 0 0 chr4 3214576 3214869 -199113478 + AluSx SINE Alu 2 294 -18 183 156 0 0 chr4 3215158 3215190 -199113157 + (TG)n Simple_repeat Simple_repeat 1 32 0 340 325 124 12 chr4 3216997 3217166 -199111181 + MIR SINE MIR 8 195 -67 470 244 0 9 chr4 3218101 3218216 -199110131 - L1MB8 LINE L1 -1 6177 6064 338 346 45 13 chr4 3218344 3218500 -199109847 + MIR SINE MIR 39 199 -63 23 0 0 0 chr4 3222082 3222105 -199106242 + AT_rich Low_complexity Low_complexity 1 23 0 819 231 0 6 chr4 3222549 3222718 -199105629 + AluJb SINE Alu 138 305 -7 186 143 0 0 chr4 3224852 3224887 -199103460 + (GGA)n Simple_repeat Simple_repeat 1 35 0 184 143 71 0 chr4 3225239 3225309 -199103038 + (CA)n Simple_repeat Simple_repeat 1 75 0 461 139 66 12 chr4 3225355 3225521 -199102826 + (CA)n Simple_repeat Simple_repeat 1 175 0 264 196 54 18 chr4 3225603 3225771 -199102576 + (CA)n Simple_repeat Simple_repeat 1 174 0 405 158 67 6 chr4 3225786 3225950 -199102397 + (CA)n Simple_repeat Simple_repeat 1 174 0 1687 219 34 8 chr4 3226746 3227098 -199101249 - MLT1A1 LTR MaLR 0 365 5 215 314 25 59 chr4 3227369 3227487 -199100860 - L2 LINE L2 0 3272 3159 2052 209 128 24 chr4 3228749 3229256 -199099091 - MER68 LTR ERV1 -2 560 1 2317 95 0 0 chr4 3233259 3233564 -199094783 - AluSq SINE Alu -8 305 1 192 315 158 0 chr4 3243417 3243544 -199084803 - MIR3 SINE MIR -61 147 1 290 274 33 16 chr4 3247681 3247807 -199080540 - MIR SINE MIR -62 146 56 261 83 0 0 chr4 3247862 3247898 -199080449 + (T)n Simple_repeat Simple_repeat 1 36 0 393 355 29 6 chr4 3248730 3248902 -199079445 - MIR SINE MIR -66 196 21 274 289 22 37 chr4 3249043 3249178 -199079169 - L1ME4a LINE L1 -11 6110 5978 180 172 0 0 chr4 3249298 3249327 -199079020 + SUBTEL_sa Satellite Satellite 129 157 -17 499 267 67 0 chr4 3249849 3249999 -199078348 + MIR SINE MIR 40 199 -63 271 279 0 13 chr4 3250289 3250368 -199077979 - L2 LINE L2 -208 3064 2987 2328 72 26 0 chr4 3251410 3251714 -199076633 - AluSq SINE Alu -1 312 1 282 298 36 0 chr4 3251741 3251825 -199076522 + MIR SINE MIR 50 136 -72 28 0 0 0 chr4 3252163 3252191 -199076156 + GC_rich Low_complexity Low_complexity 1 28 0 299 318 98 0 chr4 3252817 3252949 -199075398 - L2 LINE L2 -50 3263 3119 188 244 56 11 chr4 3252990 3253080 -199075267 - L2 LINE L2 -339 2975 2882 244 331 19 69 chr4 3253409 3253569 -199074778 - L2 LINE L2 -554 2760 2609 246 259 17 0 chr4 3253932 3253990 -199074357 + MER63 DNA MER1_type 732 790 -272 321 345 104 36 chr4 3254783 3254953 -199073394 + L1M3 LINE L1 3975 4169 -1977 2267 91 10 0 chr4 3254953 3255262 -199073085 + AluSx SINE Alu 1 312 0 321 345 104 36 chr4 3255262 3255340 -199073007 + L1M3 LINE L1 4169 4240 -1906 269 274 105 8 chr4 3255756 3255880 -199072467 + L1M3 LINE L1 5506 5641 -539 3392 216 88 70 chr4 3255896 3255954 -199072393 - Charlie1 DNA MER1_type 0 2761 2706 2427 77 0 0 chr4 3255954 3256265 -199072082 + AluY SINE Alu 1 311 0 3392 216 88 70 chr4 3256265 3256721 -199071626 - Charlie1 DNA MER1_type -55 2706 2260 2143 58 0 81 chr4 3256721 3257031 -199071316 - AluY SINE Alu -13 298 14 3392 216 88 70 chr4 3257031 3257717 -199070630 - Charlie1 DNA MER1_type -501 2260 1538 256 340 42 14 chr4 3258109 3258253 -199070094 - L2 LINE L2 -55 3258 3111 251 353 77 32 chr4 3259721 3259942 -199068405 - L1ME4a LINE L1 -1910 5898 5668 261 169 51 0 chr4 3259959 3260018 -199068329 + HAL1 LINE L1 2026 2087 -420 720 309 62 7 chr4 3260039 3260343 -199068004 - L1ME4a LINE L1 -1176 4970 4650 2951 175 39 24 chr4 3260343 3260386 -199067961 - L1MB3 LINE L1 0 6183 6142 2318 86 0 0 chr4 3260386 3260699 -199067648 - AluSq SINE Alu 0 313 1 2951 175 39 24 chr4 3260699 3261061 -199067286 - L1MB3 LINE L1 -41 6142 5764 1824 162 3 3 chr4 3261061 3261364 -199066983 - AluJb SINE Alu -9 303 1 2951 175 39 24 chr4 3261364 3261547 -199066800 - L1MB3 LINE L1 -419 5764 5585 241 230 68 14 chr4 3261568 3261642 -199066705 - L1ME LINE L1 -476 6440 6363 1726 166 7 0 chr4 3261757 3262068 -199066279 + AluJo SINE Alu 1 312 0 499 167 67 0 chr4 3262169 3262289 -199066058 + L1PA13 LINE L1 5926 6053 -110 2617 26 0 3 chr4 3262649 3262956 -199065391 + AluY SINE Alu 1 306 -5 1980 118 26 3 chr4 3262967 3263273 -199065074 + AluSp SINE Alu 1 313 0 2155 87 0 14 chr4 3263427 3263714 -199064633 + AluSx SINE Alu 13 295 -17 393 296 82 25 chr4 3264021 3264264 -199064083 + MLT2E LTR ERVL 34 290 -338 255 248 17 94 chr4 3266808 3266925 -199061422 - L1MCc LINE L1 -6250 872 765 4783 243 107 79 chr4 3266925 3267254 -199061093 - L1MCc LINE L1 -957 5984 5666 2094 114 3 22 chr4 3267254 3267569 -199060778 - AluSq SINE Alu -4 309 1 4783 243 107 79 chr4 3267569 3268283 -199060064 - L1MCc LINE L1 -1275 5666 4973 522 46 0 0 chr4 3268283 3268348 -199059999 + (TTCC)n Simple_repeat Simple_repeat 1 65 0 1921 141 0 3 chr4 3268349 3268633 -199059714 - AluSx SINE Alu -29 283 1 4783 243 107 79 chr4 3268633 3269336 -199059011 - L1MCc LINE L1 -1968 4973 4291 2047 73 4 11 chr4 3269336 3269637 -199058710 - AluSg SINE Alu 0 311 13 4783 243 107 79 chr4 3269637 3270491 -199057856 - L1MCc LINE L1 -2650 4291 3462 2383 80 0 3 chr4 3270491 3270803 -199057544 - AluY SINE Alu 0 311 1 4783 243 107 79 chr4 3270803 3271256 -199057091 - L1MCc LINE L1 -3479 3462 3023 2224 113 0 6 chr4 3271256 3271567 -199056780 - AluSq SINE Alu -4 309 1 4783 243 107 79 chr4 3271567 3272936 -199055411 - L1MCc LINE L1 -3918 3023 1263 305 286 62 19 chr4 3273465 3273626 -199054721 - L1MCc LINE L1 -6235 188 21 912 264 134 26 chr4 3273658 3274045 -199054302 + Zaphod DNA AcHobo 349 777 -3254 2319 93 3 0 chr4 3274046 3274357 -199053990 - AluSx SINE Alu 0 312 1 4573 232 95 25 chr4 3274379 3275044 -199053303 + Zaphod DNA AcHobo 2409 3026 -1005 2182 101 53 63 chr4 3275044 3275422 -199052925 + THE1C LTR MaLR 1 374 -1 4573 232 95 25 chr4 3275422 3275689 -199052658 + Zaphod DNA AcHobo 3026 3273 -758 2054 129 0 3 chr4 3275689 3275983 -199052364 + AluSx SINE Alu 1 293 -19 4573 232 95 25 chr4 3275983 3276561 -199051786 + Zaphod DNA AcHobo 3273 4026 -5 1381 286 54 40 chr4 3277235 3277502 -199050845 + L1ME LINE L1 466 728 -5354 2074 131 3 0 chr4 3277502 3277800 -199050547 - AluSx SINE Alu -12 300 2 1381 286 54 40 chr4 3277800 3278439 -199049908 + L1ME LINE L1 728 1266 -4816 2256 106 0 0 chr4 3278458 3278769 -199049578 - AluY SINE Alu 0 311 1 340 297 101 0 chr4 3278822 3278970 -199049377 - L1ME3A LINE L1 -219 5951 5789 553 194 36 61 chr4 3279069 3279234 -199049113 + LTR33 LTR ERVL 5 165 -356 532 276 76 0 chr4 3279246 3279431 -199048916 + LTR33 LTR ERVL 303 501 -20 1862 96 75 4 chr4 3280448 3280728 -199047619 + AluSq SINE Alu 1 300 -13 1056 158 6 0 chr4 3280744 3280909 -199047438 + AluJb SINE Alu 141 306 -6 1474 216 20 73 chr4 3280938 3281336 -199047011 + MLT2D LTR ERVL 30 406 -8 212 205 0 0 chr4 3282936 3282975 -199045372 + MIR SINE MIR 102 140 -68 269 173 0 0 chr4 3285341 3285393 -199042954 - L1MB2 LINE L1 -1 6170 6119 1992 126 3 3 chr4 3285398 3285692 -199042655 - AluJb SINE Alu -18 294 1 1532 172 75 3 chr4 3285711 3285747 -199042600 - L1MB3 LINE L1 -1 6182 6150 3496 169 64 7 chr4 3285747 3286439 -199041908 - L1MA7 LINE L1 -3 6288 5558 1532 172 75 3 chr4 3286439 3286734 -199041613 - L1MB3 LINE L1 -33 6150 5827 1902 137 3 3 chr4 3287535 3287835 -199040512 - AluSx SINE Alu -12 300 1 489 301 115 27 chr4 3287837 3288133 -199040214 + LTR33 LTR ERVL 197 518 -3 236 123 7 101 chr4 3289062 3289200 -199039147 + (CCCCG)n Simple_repeat Simple_repeat 1 125 0 234 217 22 43 chr4 3289232 3289324 -199039023 + G-rich Low_complexity Low_complexity 6 95 0 28 99 0 0 chr4 3289352 3289443 -199038904 + GC_rich Low_complexity Low_complexity 1 91 0 263 83 0 21 chr4 3289487 3289535 -199038812 + (CGGGG)n Simple_repeat Simple_repeat 4 50 0 28 105 0 0 chr4 3289551 3289656 -199038691 + GC_rich Low_complexity Low_complexity 1 105 0 281 256 64 32 chr4 3290290 3290415 -199037932 + MIR SINE MIR 5 133 -75 2291 89 3 3 chr4 3291676 3291980 -199036367 + AluSq SINE Alu 1 304 -9 182 79 0 53 chr4 3291989 3292027 -199036320 + (CAAAAA)n Simple_repeat Simple_repeat 1 36 0 642 291 122 33 chr4 3292165 3292471 -199035876 - MLT1D LTR MaLR 0 505 143 1780 167 3 25 chr4 3292471 3292789 -199035558 - AluJo SINE Alu -1 311 1 642 291 122 33 chr4 3292789 3292942 -199035405 - MLT1D LTR MaLR -362 143 5 1335 243 179 11 chr4 3294013 3294654 -199033693 - HAL1 LINE L1 -611 1896 1148 1039 156 39 49 chr4 3294656 3294861 -199033486 - AluJo SINE Alu -18 294 92 1402 261 151 31 chr4 3294868 3295812 -199032535 - L1ME LINE L1 -4872 1208 79 222 275 0 14 chr4 3296334 3296403 -199031944 + MIR SINE MIR 166 233 -29 912 240 154 37 chr4 3296803 3297247 -199031100 - MLT1D LTR MaLR -9 496 1 241 257 0 71 chr4 3297855 3297995 -199030352 + (CTGGGG)n Simple_repeat Simple_repeat 4 133 0 453 219 38 19 chr4 3298216 3298321 -199030026 - MER53 DNA DNA -82 107 1 180 111 0 0 chr4 3299336 3299363 -199028984 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 232 262 278 0 chr4 3300799 3300925 -199027422 + MIR SINE MIR 21 181 -81 1005 247 100 25 chr4 3301208 3301655 -199026692 - MLT1F1 LTR MaLR -114 540 2 254 318 139 20 chr4 3302218 3302369 -199025978 - MLT1-int LTR MaLR -484 887 719 507 266 13 38 chr4 3307446 3307604 -199020743 + MIR SINE MIR 37 190 -72 1470 161 53 5 chr4 3308082 3308412 -199019935 + Tigger4(Zombi) DNA MER2_type 1 2731 0 257 324 54 0 chr4 3308501 3308575 -199019772 + MIR3 SINE MIR 91 168 -40 202 293 9 57 chr4 3308566 3308672 -199019675 + MER5A DNA MER1_type 18 118 -71 * 630 179 9 0 chr4 3308842 3308948 -199019399 + AluJo SINE Alu 36 142 -170 653 150 0 35 chr4 3309524 3309637 -199018710 + FRAM SINE Alu 59 167 -9 523 272 107 35 chr4 3310062 3310352 -199017995 - MLT1D LTR MaLR 0 505 195 85 35 0 0 chr4 3310534 3310647 -199017700 + AT_rich Low_complexity Low_complexity 1 113 0 2342 77 0 7 chr4 3310960 3311268 -199017079 - AluY SINE Alu 0 306 1 2076 204 77 6 chr4 3311372 3311893 -199016454 + MER68 LTR ERV1 3 560 -2 229 156 302 2 chr4 3312267 3312330 -199016017 - MER5C DNA MER1_type -104 85 4 891 154 18 24 chr4 3315709 3315878 -199012469 + AluJo SINE Alu 136 303 -9 1879 129 3 58 chr4 3316001 3316310 -199012037 - AluJo SINE Alu -20 292 1 369 217 24 21 chr4 3317639 3317764 -199010583 - LTR50 LTR ERVL -3 792 654 262 253 77 0 chr4 3318019 3318110 -199010237 - LTR50 LTR ERVL -697 98 1 185 0 0 39 chr4 3319147 3319173 -199009174 + (TTAA)n Simple_repeat Simple_repeat 4 28 0 680 254 24 15 chr4 3319242 3319447 -199008900 + Charlie1 DNA MER1_type 2555 2761 0 370 296 76 41 chr4 3320020 3320414 -199007933 - L1ME4a LINE L1 -267 5854 5533 207 0 0 0 chr4 3320414 3320437 -199007910 + (TG)n Simple_repeat Simple_repeat 1 23 0 * 306 0 0 0 chr4 3320436 3320470 -199007877 + (GA)n Simple_repeat Simple_repeat 1 34 0 232 254 164 26 chr4 3321396 3321585 -199006762 - L1ME4a LINE L1 -2340 5468 5254 962 117 25 77 chr4 3321883 3322079 -199006268 + MSTC LTR MaLR 1 186 -242 9193 166 46 10 chr4 3322079 3322817 -199005530 + L1PB4 LINE L1 3465 4175 -1981 1762 171 21 3 chr4 3322817 3323103 -199005244 - AluJo SINE Alu -21 291 1 9193 166 46 10 chr4 3323103 3324959 -199003388 + L1PB4 LINE L1 4175 6150 -6 874 171 96 21 chr4 3325008 3325195 -199003152 + MSTC LTR MaLR 227 427 -1 328 164 33 0 chr4 3327101 3327162 -199001185 + L2 LINE L2 3250 3312 -1 747 248 205 9 chr4 3327313 3327640 -199000707 - MLT1J LTR MaLR -112 399 9 226 250 45 11 chr4 3327788 3327876 -199000471 + L1ME4a LINE L1 5931 6021 -100 30 0 0 0 chr4 3327985 3328015 -199000332 + AT_rich Low_complexity Low_complexity 1 30 0 228 275 90 36 chr4 3328835 3329002 -198999345 - L1ME3A LINE L1 -214 5956 5781 326 233 12 12 chr4 3329078 3329164 -198999183 - L1ME3A LINE L1 -2322 5486 5401 1796 79 0 5 chr4 3329399 3329615 -198998732 - AluSx SINE Alu -25 285 71 2458 50 7 3 chr4 3329615 3329910 -198998437 - AluY SINE Alu -13 298 1 629 92 0 23 chr4 3329910 3329997 -198998350 - AluSx SINE Alu -226 87 3 471 306 150 22 chr4 3330072 3330618 -198997729 - L1ME3A LINE L1 -1152 4994 4379 571 254 96 44 chr4 3330714 3331099 -198997248 - L1ME3A LINE L1 -2108 4038 3634 212 196 0 39 chr4 3331118 3331169 -198997178 + CT-rich Low_complexity Low_complexity 4 52 0 25 0 0 0 chr4 3331224 3331249 -198997098 + AT_rich Low_complexity Low_complexity 1 25 0 232 191 0 0 chr4 3332225 3332267 -198996080 + Alu SINE Alu 1 42 -260 483 172 0 50 chr4 3332267 3332366 -198995981 + AluJo/FRAM SINE Alu 202 295 -17 2194 102 0 7 chr4 3332369 3332687 -198995660 + AluSx SINE Alu 1 316 0 323 281 109 1 chr4 3332716 3332957 -198995390 + LTR33A LTR ERVL 311 515 -8 376 328 42 0 chr4 3333088 3333207 -198995140 - L2 LINE L2 -1 3271 3148 772 226 28 9 chr4 3333253 3333470 -198994877 + L1MB3 LINE L1 5115 5335 -811 3452 208 64 25 chr4 3333563 3334409 -198993938 + L1MB3 LINE L1 5290 6168 -15 267 213 136 12 chr4 3334468 3334580 -198993767 + MIR3 SINE MIR 41 162 -54 2261 104 3 0 chr4 3334631 3334920 -198993427 - AluSp SINE Alu -22 291 2 1961 150 7 0 chr4 3335763 3336057 -198992290 + AluJo SINE Alu 2 297 -15 2108 180 42 9 chr4 3336074 3336501 -198991846 - MER65A LTR ERV1 0 445 5 456 321 0 39 chr4 3337723 3337980 -198990367 + G-rich Low_complexity Low_complexity 1 246 0 510 310 4 11 chr4 3338032 3338462 -198989885 + G-rich Low_complexity Low_complexity 1 426 0 191 252 65 89 chr4 3339217 3339340 -198989007 - MIR SINE MIR -32 230 111 325 305 57 14 chr4 3339894 3340035 -198988312 - MIR SINE MIR -14 248 102 1162 254 79 10 chr4 3340077 3340471 -198987876 - L1MC2 LINE L1 -6 6338 5918 2353 126 54 28 chr4 3341601 3342029 -198986318 - MER65A LTR ERV1 -6 439 1 3337 96 20 6 chr4 3342029 3342538 -198985809 - MER65A-int LTR ERV1 0 4871 4356 676 139 130 0 chr4 3342560 3342675 -198985672 - BC200 scRNA scRNA -66 134 5 3707 160 94 3 chr4 3342680 3343361 -198984986 - MER65A-int LTR ERV1 -524 4347 3605 2645 177 109 46 chr4 3343413 3343797 -198984550 - MER65A-int LTR ERV1 -1237 5094 4736 2429 86 0 0 chr4 3343797 3344098 -198984249 + AluY SINE Alu 1 301 -10 2645 177 109 46 chr4 3344098 3344891 -198983456 - MER65A-int LTR ERV1 -1595 4736 2805 1280 138 48 45 chr4 3344874 3345165 -198983182 - MER65A-int LTR ERV1 -2577 4021 3730 * 658 125 194 44 chr4 3345245 3345405 -198982942 - MER65A-int LTR ERV1 -2868 3730 3547 1343 180 82 96 chr4 3345668 3346393 -198981954 - MER65A-int LTR ERV1 -3123 3475 1546 6164 167 61 27 chr4 3346399 3347034 -198981313 - MER65A-int LTR ERV1 -2349 2522 1910 2073 164 0 0 chr4 3347034 3347346 -198981001 + AluJo SINE Alu 1 312 0 6164 167 61 27 chr4 3347346 3349005 -198979342 - MER65A-int LTR ERV1 -2961 1910 81 2592 130 34 20 chr4 3349087 3349526 -198978821 - MER65A LTR ERV1 0 445 1 1611 343 56 16 chr4 3349526 3350612 -198977735 - HERV16 LTR ERVL -2009 2987 1851 743 287 108 34 chr4 3351090 3351564 -198976783 + L1ME3A LINE L1 2684 3192 -2954 * 1178 235 119 82 chr4 3351549 3352154 -198976193 + L1ME3A LINE L1 3598 4234 -1912 2073 164 0 0 chr4 3352154 3352459 -198975888 + AluJb SINE Alu 8 312 0 1178 235 119 82 chr4 3352459 3352560 -198975787 + L1ME3A LINE L1 4234 4330 -1816 294 211 84 21 chr4 3352570 3352665 -198975682 + L1ME3A LINE L1 4567 4667 -1479 2053 141 0 13 chr4 3352677 3352989 -198975358 - AluJb SINE Alu -4 308 1 7107 172 44 15 chr4 3352996 3355489 -198972858 - L1MB3 LINE L1 0 6183 3611 829 142 18 17 chr4 3355494 3356071 -198972276 + CT-rich Low_complexity Low_complexity 1 577 0 826 165 35 18 chr4 3356074 3356244 -198972103 - L1MB3 LINE L1 -2528 3618 3446 2293 131 0 0 chr4 3356245 3356557 -198971790 - AluSx SINE Alu 0 312 1 883 114 8 0 chr4 3356570 3356693 -198971654 - AluJb SINE Alu -187 125 2 1906 214 11 15 chr4 3356698 3357236 -198971111 - L1MB3 LINE L1 -2695 3451 2916 236 245 0 0 chr4 3357470 3357523 -198970824 + L1ME3A LINE L1 5296 5348 -826 630 301 79 18 chr4 3357587 3357866 -198970481 + L1ME3A LINE L1 5669 5964 -206 329 224 6 0 chr4 3358977 3359133 -198969214 + (TG)n Simple_repeat Simple_repeat 1 157 0 453 238 4 7 chr4 3359160 3359544 -198968803 + (TG)n Simple_repeat Simple_repeat 1 382 0 287 289 0 0 chr4 3359573 3359656 -198968691 + (TG)n Simple_repeat Simple_repeat 1 83 0 301 208 0 31 chr4 3359679 3359809 -198968538 + (TG)n Simple_repeat Simple_repeat 2 127 0 269 250 226 12 chr4 3361811 3361979 -198966368 + MER58A DNA MER1_type 1 204 -20 207 43 29 100 chr4 3361986 3362056 -198966291 + (GGGA)n Simple_repeat Simple_repeat 2 66 0 342 246 27 55 chr4 3362518 3362628 -198965719 - L2 LINE L2 -6 3266 3160 291 192 0 0 chr4 3364957 3365030 -198963317 + (TG)n Simple_repeat Simple_repeat 1 73 0 691 182 0 7 chr4 3365138 3365286 -198963061 + L1MB3 LINE L1 6036 6182 -1 235 83 0 0 chr4 3365290 3365326 -198963021 + Charlie1 DNA MER1_type 2327 2362 -399 1949 145 13 7 chr4 3365341 3365645 -198962702 + AluSx SINE Alu 3 308 -4 348 297 199 66 chr4 3365657 3366004 -198962343 + L1MEc LINE L1 1893 2285 -4111 1412 248 68 56 chr4 3366004 3366769 -198961578 + L1M4 LINE L1 4316 5089 -1057 2226 136 3 0 chr4 3366781 3367091 -198961256 - AluJb SINE Alu -1 311 1 645 112 0 84 chr4 3367093 3367236 -198961111 - AluSq/x SINE Alu -179 133 3 2413 100 0 3 chr4 3367246 3367557 -198960790 - AluSg SINE Alu 0 310 1 911 317 92 63 chr4 3367557 3367577 -198960770 - L1M4 LINE L1 -2969 3177 3159 1787 183 0 13 chr4 3367577 3367889 -198960458 - AluJb SINE Alu -4 308 1 911 317 92 63 chr4 3367889 3367932 -198960415 - L1M4 LINE L1 -2987 3159 3119 2585 59 0 3 chr4 3367932 3368236 -198960111 - AluY SINE Alu -8 303 1 911 317 92 63 chr4 3368236 3368402 -198959945 - L1M4 LINE L1 -3027 3119 2959 2335 97 0 0 chr4 3368402 3368724 -198959623 - AluSx SINE Alu 0 312 1 911 317 92 63 chr4 3368724 3368751 -198959596 - L1M4 LINE L1 -3187 2959 2934 1934 117 81 0 chr4 3368751 3369024 -198959323 + AluSx SINE Alu 1 295 -17 911 317 92 63 chr4 3369024 3369802 -198958545 - L1M4 LINE L1 -3212 2934 2110 22 0 0 0 chr4 3369879 3369901 -198958446 + AT_rich Low_complexity Low_complexity 1 22 0 2346 103 0 7 chr4 3369905 3370207 -198958140 + AluSx SINE Alu 1 300 -12 2410 78 0 3 chr4 3370211 3370505 -198957842 + AluSc SINE Alu 3 295 -14 1800 163 50 0 chr4 3372265 3372547 -198955800 + AluJb SINE Alu 1 296 -16 331 253 234 7 chr4 3373479 3373633 -198954714 + MER5A DNA MER1_type 1 189 0 2170 123 3 0 chr4 3373758 3374058 -198954289 - AluSx SINE Alu -11 301 1 2094 130 13 3 chr4 3374060 3374361 -198953986 - AluSx SINE Alu -6 306 3 303 248 101 52 chr4 3374392 3374719 -198953628 + L1MEc LINE L1 3007 3349 -2866 373 220 93 34 chr4 3374728 3374846 -198953501 + L1MC5 LINE L1 7807 7931 -30 1750 151 28 14 chr4 3374855 3375140 -198953207 + AluJb SINE Alu 3 291 -21 238 296 116 73 chr4 3375168 3375607 -198952740 + L1MEc LINE L1 3361 3818 -2397 876 114 0 0 chr4 3375610 3375724 -198952623 + AluSp/q SINE Alu 175 288 -25 337 243 57 64 chr4 3375726 3375866 -198952481 + L1MEc LINE L1 3779 3917 -2298 2285 88 20 0 chr4 3375872 3376167 -198952180 + AluSp SINE Alu 1 301 -12 303 93 0 0 chr4 3376171 3376214 -198952133 + (TCCC)n Simple_repeat Simple_repeat 4 46 0 1691 157 3 25 chr4 3376217 3376503 -198951844 - AluJb SINE Alu -32 280 1 249 33 0 0 chr4 3376819 3376849 -198951498 + (A)n Simple_repeat Simple_repeat 1 30 0 248 83 28 0 chr4 3376855 3376891 -198951456 - MER4A LTR ERV1 -367 297 261 1218 168 5 37 chr4 3376947 3377161 -198951186 - AluJo SINE Alu -105 207 1 635 179 0 34 chr4 3378545 3378662 -198949685 - FLAM_C SINE Alu -24 119 7 593 228 152 0 chr4 3378721 3378879 -198949468 + MER21B LTR ERV1 5 186 -677 2304 121 0 0 chr4 3378928 3379225 -198949122 - AluSg SINE Alu -13 297 1 761 278 86 30 chr4 3379332 3379923 -198948424 + L1M4 LINE L1 3321 3944 -2202 1853 90 98 22 chr4 3380066 3380343 -198948004 - AluSg SINE Alu -7 303 6 2044 196 56 0 chr4 3380376 3380769 -198947578 - MER47B DNA MER2_type -2 416 2 2269 92 0 0 chr4 3381011 3381295 -198947052 - AluSc SINE Alu -21 288 5 421 282 89 81 chr4 3381545 3382238 -198946109 + L1MEd LINE L1 580 1255 -4864 317 297 19 26 chr4 3382700 3382855 -198945492 + L1MEd LINE L1 1311 1464 -4846 2514 79 0 0 chr4 3382855 3383158 -198945189 + AluY SINE Alu 1 303 -8 338 297 137 17 chr4 3383213 3383388 -198944959 - MIR SINE MIR -16 246 51 874 212 106 32 chr4 3383637 3383920 -198944427 + L1MB3 LINE L1 5879 6182 -1 2107 92 55 0 chr4 3383928 3384221 -198944126 + AluY SINE Alu 1 309 -2 2057 98 60 0 chr4 3384263 3384548 -198943799 + AluSp SINE Alu 3 304 -9 1469 205 26 10 chr4 3385685 3385987 -198942360 - AluJo SINE Alu -5 307 1 286 260 106 10 chr4 3385994 3386098 -198942249 - MIR SINE MIR -117 145 32 396 294 28 28 chr4 3386104 3386281 -198942066 + MER104 DNA MER2_type 1 177 -3 2002 118 27 0 chr4 3386937 3387233 -198941114 + AluSx SINE Alu 1 304 -8 2464 93 0 0 chr4 3387325 3387635 -198940712 - AluY SINE Alu -1 310 1 2161 123 3 3 chr4 3387664 3387957 -198940390 - AluSx SINE Alu -19 293 1 805 147 7 0 chr4 3388034 3388170 -198940177 + AluSg/x SINE Alu 176 312 0 2308 148 112 59 chr4 3388171 3388727 -198939620 - L1MD2 LINE L1 -291 6068 5484 495 0 0 0 chr4 3388767 3388822 -198939525 + (TG)n Simple_repeat Simple_repeat 2 56 0 1505 185 25 25 chr4 3388827 3389113 -198939234 - AluJo SINE Alu -26 286 1 476 267 182 15 chr4 3389162 3389439 -198938908 + L2 LINE L2 2784 3104 -209 282 304 236 20 chr4 3389684 3389832 -198938515 - MER5A DNA MER1_type 0 189 10 353 307 132 52 chr4 3390182 3390433 -198937914 + L1ME4a LINE L1 5840 6110 -11 2476 74 6 3 chr4 3390486 3390797 -198937550 + AluSp SINE Alu 1 312 -1 1203 181 78 4 chr4 3390852 3391123 -198937224 + MER58B DNA MER1_type 43 333 -8 3533 187 31 0 chr4 3391123 3391889 -198936458 + L1M4 LINE L1 4517 5306 -840 2290 126 0 0 chr4 3391944 3392245 -198936102 + AluSq SINE Alu 1 301 -12 977 273 88 33 chr4 3392415 3392911 -198935436 + L2 LINE L2 2503 3036 -277 890 171 6 47 chr4 3392912 3393082 -198935265 + FRAM SINE Alu 1 163 -13 203 191 24 0 chr4 3393087 3393129 -198935218 + L2 LINE L2 3032 3074 -239 1934 151 3 40 chr4 3393134 3393279 -198935068 + AluSx SINE Alu 1 150 -162 2381 67 0 54 chr4 3393279 3393594 -198934753 + AluY SINE Alu 1 298 -13 1934 151 3 40 chr4 3393594 3393772 -198934575 + AluSx SINE Alu 150 312 0 418 98 16 0 chr4 3393785 3393846 -198934501 + U7 snRNA snRNA 2 63 0 23 0 0 0 chr4 3393849 3393872 -198934475 + AT_rich Low_complexity Low_complexity 1 23 0 740 233 93 23 chr4 3393888 3394103 -198934244 + L2 LINE L2 3084 3313 0 21 57 0 0 chr4 3394510 3394545 -198933802 + AT_rich Low_complexity Low_complexity 1 35 0 2170 119 3 0 chr4 3394592 3394877 -198933470 + AluSg SINE Alu 1 286 -24 2233 109 0 0 chr4 3395119 3395404 -198932943 - AluSx SINE Alu -22 290 6 23 33 0 0 chr4 3395411 3395441 -198932906 + AT_rich Low_complexity Low_complexity 1 30 0 378 181 0 0 chr4 3397235 3397340 -198931007 + (CGG)n Simple_repeat Simple_repeat 2 106 0 555 16 0 0 chr4 3397342 3397406 -198930941 + (CTG)n Simple_repeat Simple_repeat 1 64 0 28 61 0 0 chr4 3397626 3397675 -198930672 + GC_rich Low_complexity Low_complexity 1 49 0 314 209 18 42 chr4 3397873 3398049 -198930298 + (CGGGG)n Simple_repeat Simple_repeat 1 171 0 452 234 6 34 chr4 3398084 3398259 -198930088 + (CGGGG)n Simple_repeat Simple_repeat 5 174 0 734 146 41 8 chr4 3399201 3399324 -198929023 + FRAM SINE Alu 28 154 -22 2152 99 20 3 chr4 3399338 3399631 -198928716 + AluSx SINE Alu 6 303 -9 1287 239 134 19 chr4 3399704 3400168 -198928179 + MLT1E LTR MaLR 8 524 -69 2115 156 51 0 chr4 3400264 3400635 -198927712 - MLT1B LTR MaLR 0 390 1 812 251 116 28 chr4 3400646 3401001 -198927346 + MLT1J LTR MaLR 17 402 -109 421 297 189 26 chr4 3453213 3453556 -198874791 + L2 LINE L2 2246 2644 -670 186 188 0 38 chr4 3454004 3454084 -198874263 + (CCCCAG)n Simple_repeat Simple_repeat 3 79 0 270 0 0 0 chr4 3454554 3454584 -198873763 + (CA)n Simple_repeat Simple_repeat 2 31 0 231 339 28 18 chr4 3454930 3455039 -198873308 + MER112 DNA MER1_type 151 260 0 694 108 0 0 chr4 3455301 3455394 -198872953 - AluJ SINE Alu -11 301 209 1337 146 5 0 chr4 3455455 3455661 -198872686 - AluJ SINE Alu -105 207 1 4074 165 93 25 chr4 3456513 3457296 -198871051 + L1MA9 LINE L1 4950 5847 -465 279 0 0 0 chr4 3457296 3457327 -198871020 + (TG)n Simple_repeat Simple_repeat 2 32 0 4074 165 93 25 chr4 3457327 3457778 -198870569 + L1MA9 LINE L1 5847 6266 -46 2520 129 27 3 chr4 3457797 3458162 -198870185 - THE1C LTR MaLR 0 375 2 10469 120 39 6 chr4 3458163 3459692 -198868655 - THE1C-int LTR MaLR 0 1580 1 2426 114 44 6 chr4 3459692 3460053 -198868294 - THE1C LTR MaLR 0 375 1 422 300 78 11 chr4 3460926 3461361 -198866986 - L1MEd LINE L1 -5031 1174 695 1503 180 25 3 chr4 3461610 3461893 -198866454 + AluJo SINE Alu 5 293 -19 2131 112 3 0 chr4 3462438 3462734 -198865613 - AluSx SINE Alu -15 297 1 213 148 0 49 chr4 3466486 3466547 -198861800 + (GGGA)n Simple_repeat Simple_repeat 1 58 0 272 289 90 19 chr4 3467536 3467692 -198860655 + L3 LINE CR1 1263 1429 -148 232 336 18 26 chr4 3468924 3469037 -198859310 + MIR SINE MIR 24 135 -73 295 273 136 9 chr4 3470130 3470240 -198858107 + L1ME3A LINE L1 6044 6167 -3 315 223 39 10 chr4 3470554 3470657 -198857690 - L1MEd LINE L1 -4936 1460 1355 552 275 61 77 chr4 3470667 3470993 -198857354 - L1MEd LINE L1 -5121 1275 958 2040 108 14 0 chr4 3470993 3471288 -198857059 + AluSx SINE Alu 1 299 -13 552 275 61 77 chr4 3471288 3471455 -198856892 - L1MEd LINE L1 -5438 958 790 616 288 106 12 chr4 3471532 3471938 -198856409 - L1MEd LINE L1 -5843 553 110 2089 139 0 0 chr4 3472446 3472749 -198855598 - AluSx SINE Alu -9 303 1 1765 280 95 30 chr4 3472944 3473173 -198855174 - L1ME3A LINE L1 -5 6165 5952 1700 139 36 53 chr4 3473173 3473294 -198855053 + AluSx SINE Alu 1 122 -190 204 111 0 0 chr4 3473294 3473330 -198855017 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 1700 139 36 53 chr4 3473330 3473511 -198854836 + AluSx SINE Alu 122 298 -14 1765 280 95 30 chr4 3473511 3474128 -198854219 - L1ME3A LINE L1 -218 5952 5376 1401 192 74 62 chr4 3474128 3474467 -198853880 + MER2 DNA MER2_type 2 344 0 1765 280 95 30 chr4 3474467 3475062 -198853285 - L1ME3A LINE L1 -794 5376 4628 184 241 76 0 chr4 3475694 3475773 -198852574 - L2 LINE L2 -1202 2112 2028 862 270 64 19 chr4 3475814 3476125 -198852222 - L2 LINE L2 -839 2475 2151 637 281 130 34 chr4 3476188 3476426 -198851921 + MIR SINE MIR 2 262 0 348 264 88 83 chr4 3476540 3476623 -198851724 + L1M4 LINE L1 2173 2254 -3892 604 192 14 110 chr4 3476623 3476769 -198851578 + FLAM_A SINE Alu 2 133 0 348 264 88 83 chr4 3476769 3476901 -198851446 + L1M4 LINE L1 2254 2389 -3757 542 342 59 5 chr4 3476987 3477584 -198850763 + L1M4 LINE L1 2549 3177 -2969 797 130 73 0 chr4 3477630 3477753 -198850594 + AluJb SINE Alu 2 133 -179 640 297 100 20 chr4 3478020 3478320 -198850027 - MLT1I LTR MaLR 0 409 86 367 351 49 9 chr4 3478396 3478621 -198849726 + L1M4 LINE L1 3604 3837 -2309 265 264 0 35 chr4 3478644 3478731 -198849616 - L2 LINE L2 -3 3310 3227 234 310 0 0 chr4 3478743 3478814 -198849533 + L1M4 LINE L1 3863 3933 -2213 324 194 6 56 chr4 3478878 3479038 -198849309 + (TTA)n Simple_repeat Simple_repeat 1 152 0 488 275 85 68 chr4 3479107 3479343 -198849004 + L1M4 LINE L1 4010 4249 -1897 25 0 0 0 chr4 3480486 3480511 -198847836 + AT_rich Low_complexity Low_complexity 1 25 0 242 333 72 9 chr4 3481735 3481846 -198846501 + MIR3 SINE MIR 43 160 -48 704 245 107 28 chr4 3482226 3482479 -198845868 + MER115 DNA AcHobo 410 682 -11 1600 276 122 21 chr4 3482735 3483366 -198844981 + L1MC4 LINE L1 6383 7077 -965 1154 241 148 66 chr4 3483427 3484196 -198844151 + L1MC4 LINE L1 7129 8042 0 259 313 55 8 chr4 3484752 3484880 -198843467 + MER58A DNA MER1_type 3 136 0 858 144 81 58 chr4 3488471 3488645 -198839702 - AluJo SINE Alu -85 227 50 240 318 87 8 chr4 3489334 3489460 -198838887 - L1P LINE L1 -1055 5091 4956 239 247 49 12 chr4 3492160 3492241 -198836106 + L2 LINE L2 3227 3310 -3 300 205 64 26 chr4 3496057 3496135 -198832212 - L1ME4a LINE L1 -6 6115 6035 1453 127 51 82 chr4 3497106 3497256 -198831091 + AluSx SINE Alu 1 154 -156 2284 97 0 0 chr4 3497256 3497554 -198830793 + AluSx SINE Alu 1 298 -14 1453 127 51 82 chr4 3497554 3497722 -198830625 + AluSx SINE Alu 154 310 0 1528 148 9 50 chr4 3497741 3498059 -198830288 + AluJo SINE Alu 6 310 -2 200 132 57 132 chr4 3498072 3498125 -198830222 - MER5B DNA MER1_type -71 107 59 193 313 45 0 chr4 3498543 3498610 -198829737 - L2 LINE L2 -19 3253 3184 456 254 56 8 chr4 3499959 3500085 -198828262 - MLT1H LTR MaLR -416 133 2 215 324 34 34 chr4 3502672 3502820 -198825527 + MIR SINE MIR 35 182 -80 323 280 0 50 chr4 3503993 3504175 -198824172 + G-rich Low_complexity Low_complexity 3 175 0 272 255 0 81 chr4 3504195 3504356 -198823991 + G-rich Low_complexity Low_complexity 2 149 0 224 238 20 75 chr4 3504672 3504819 -198823528 + G-rich Low_complexity Low_complexity 3 141 0 2338 101 0 0 chr4 3505912 3506219 -198822128 + AluSx SINE Alu 6 312 0 288 263 11 65 chr4 3511895 3512081 -198816266 + (CACCC)n Simple_repeat Simple_repeat 5 180 0 1900 136 85 25 chr4 3512489 3512843 -198815504 - THE1C LTR MaLR 0 375 1 185 229 306 19 chr4 3518592 3518749 -198809598 - L2 LINE L2 -245 3068 2867 212 305 11 0 chr4 3519087 3519182 -198809165 + C-rich Low_complexity Low_complexity 5 100 0 212 116 93 0 chr4 3520072 3520115 -198808232 - L2 LINE L2 -223 3049 3003 211 308 62 0 chr4 3523802 3523867 -198804480 - MIR SINE MIR -67 141 73 197 132 79 0 chr4 3524215 3524253 -198804094 - MIR SINE MIR -62 146 106 347 280 34 25 chr4 3527068 3527186 -198801161 - MIR SINE MIR -83 179 61 222 37 0 0 chr4 3529113 3529140 -198799207 + (TCCC)n Simple_repeat Simple_repeat 4 30 0 2220 122 0 0 chr4 3529142 3529591 -198798756 - AluSx SINE Alu 0 450 2 1493 150 108 0 chr4 3529899 3530159 -198798188 + AluJb SINE Alu 1 288 -24 1534 192 3 79 chr4 3530165 3530319 -198798028 + MLT1B LTR MaLR 29 193 -197 3297 166 92 7 chr4 3530319 3530904 -198797443 - LTR24C LTR ERV1 0 635 1 1534 192 3 79 chr4 3530904 3531140 -198797207 + MLT1B LTR MaLR 193 389 -1 499 281 91 40 chr4 3531434 3531764 -198796583 - L1M4 LINE L1 -2399 3747 3394 2125 127 0 0 chr4 3531764 3532056 -198796291 + AluSg SINE Alu 3 294 -16 499 281 91 40 chr4 3532056 3532099 -198796248 - L1M4 LINE L1 -2752 3394 3355 678 155 0 49 chr4 3532104 3532246 -198796101 + MLT2A2 LTR ERVL 1 135 -318 3160 102 14 7 chr4 3532258 3532699 -198795648 + MLT2A1 LTR ERVL 1 444 0 26808 56 4 8 chr4 3532699 3534564 -198793783 + HERVL-A1 LTR ERVL 1 1845 -3809 2448 81 0 0 chr4 3534564 3534874 -198793473 - AluY SINE Alu -1 310 1 26808 56 4 8 chr4 3534874 3536640 -198791707 + HERVL-A1 LTR ERVL 1845 3617 -2037 2694 122 21 0 chr4 3536648 3537076 -198791271 - LTR3b LTR ERVK 0 437 1 11946 67 4 4 chr4 3537076 3538729 -198789618 + HERVL LTR ERVL 3610 5263 -391 1453 105 16 47 chr4 3538729 3538987 -198789360 - THE1B LTR MaLR -114 250 1 225 316 25 0 chr4 3538994 3539073 -198789274 - MLT1J2 LTR MaLR -278 172 92 42 20 0 0 chr4 3541776 3541825 -198786522 + GC_rich Low_complexity Low_complexity 1 49 0 25 31 0 0 chr4 3541900 3541932 -198786415 + GC_rich Low_complexity Low_complexity 1 32 0 320 337 0 29 chr4 3545875 3546015 -198782332 + (TG)n Simple_repeat Simple_repeat 1 137 -30 1116 206 87 59 chr4 3546015 3546370 -198781977 - MLT1A1 LTR MaLR 0 365 1 320 337 0 29 chr4 3546370 3546401 -198781946 + (TG)n Simple_repeat Simple_repeat 137 167 0 663 246 3 0 chr4 3546436 3547582 -198780765 + (TG)n Simple_repeat Simple_repeat 1 1149 0 379 261 161 33 chr4 3548323 3548722 -198779625 - MLT1C LTR MaLR -4 463 18 569 270 133 0 chr4 3548980 3549176 -198779171 + MER58A DNA MER1_type 1 222 -2 357 273 209 5 chr4 3549544 3549731 -198778616 - MIR SINE MIR -3 259 35 502 297 16 16 chr4 3550279 3550464 -198777883 + MER58A DNA MER1_type 40 224 0 24 0 0 0 chr4 3551991 3552015 -198776332 + GC_rich Low_complexity Low_complexity 1 24 0 199 77 26 26 chr4 3552378 3552417 -198775930 + (GGGA)n Simple_repeat Simple_repeat 1 39 0 888 122 0 36 chr4 3552744 3552883 -198775464 + AluJb SINE Alu 1 134 -178 2122 122 0 0 chr4 3552886 3553180 -198775167 + AluSx SINE Alu 1 294 -18 643 163 0 0 chr4 3553181 3553279 -198775068 + AluSg/x SINE Alu 206 303 -9 315 187 66 0 chr4 3553280 3553371 -198774976 + MER96B DNA MER1_type? 259 355 -62 255 251 0 73 chr4 3554507 3554686 -198773661 + (CCCG)n Simple_repeat Simple_repeat 4 169 0 277 335 78 48 chr4 3557364 3557594 -198770753 - MLT1C LTR MaLR -1 466 230 193 248 69 59 chr4 3558450 3558551 -198769796 - L2 LINE L2 -179 3093 2992 2068 143 0 0 chr4 3558696 3559004 -198769343 + AluSx SINE Alu 1 308 -4 296 239 0 65 chr4 3560611 3560711 -198767636 - MLT1H LTR MaLR -80 508 383 333 282 150 0 chr4 3560754 3560967 -198767380 - MLT1H LTR MaLR -229 320 76 253 311 104 0 chr4 3562303 3562409 -198765938 + MIR SINE MIR 32 147 -63 210 261 29 14 chr4 3565692 3565761 -198762586 - MIR3 SINE MIR -27 181 112 212 204 13 40 chr4 3568232 3568384 -198759963 + CT-rich Low_complexity Low_complexity 1 148 0 423 262 16 33 chr4 3568425 3568608 -198759739 + CT-rich Low_complexity Low_complexity 1 180 0 242 425 0 6 chr4 3568607 3568788 -198759559 + C-rich Low_complexity Low_complexity 1 180 0 * 444 287 29 0 chr4 3568688 3568862 -198759485 + CT-rich Low_complexity Low_complexity 2 180 0 244 215 11 43 chr4 3568897 3569083 -198759264 + CT-rich Low_complexity Low_complexity 1 180 0 233 193 12 56 chr4 3569125 3569286 -198759061 + CT-rich Low_complexity Low_complexity 3 156 0 256 183 12 55 chr4 3569353 3569517 -198758830 + CT-rich Low_complexity Low_complexity 4 160 0 421 298 9 31 chr4 3569542 3569773 -198758574 + CT-rich Low_complexity Low_complexity 1 225 0 197 216 78 0 chr4 3572234 3572285 -198756062 - MIR SINE MIR -113 149 95 205 322 0 11 chr4 3573101 3573188 -198755159 + (CCTG)n Simple_repeat Simple_repeat 3 88 0 338 330 128 5 chr4 3573227 3573430 -198754917 + MIR SINE MIR 2 229 -33 453 195 0 23 chr4 3581668 3581755 -198746592 - AluJ/FLAM SINE Alu -227 85 1 528 265 6 6 chr4 3581774 3581936 -198746411 + L1M4 LINE L1 2874 3035 -3111 314 302 109 73 chr4 3581951 3582309 -198746038 + L1ME3 LINE L1 3 373 -5746 1952 125 0 72 chr4 3582526 3582662 -198745685 + AluSx SINE Alu 1 145 -167 2171 113 16 7 chr4 3582662 3582972 -198745375 + AluSq SINE Alu 1 313 0 1952 125 0 72 chr4 3582972 3583170 -198745177 + AluSx SINE Alu 145 311 -1 1875 136 0 11 chr4 3584264 3584550 -198743797 - AluSx SINE Alu -19 293 11 2269 81 7 0 chr4 3584570 3584866 -198743481 - AluSq SINE Alu -15 298 1 388 271 95 29 chr4 3584964 3585126 -198743221 + L1ME2 LINE L1 5121 5271 -924 1587 167 13 36 chr4 3585126 3585431 -198742916 + AluJo SINE Alu 1 298 -14 388 271 95 29 chr4 3585431 3585568 -198742779 + L1ME2 LINE L1 5271 5442 -753 386 284 28 124 chr4 3585586 3585804 -198742543 - L1M4 LINE L1 -3305 2841 2645 1094 317 108 25 chr4 3585829 3586208 -198742139 + L1ME3 LINE L1 3032 3378 -2751 2211 113 0 0 chr4 3586208 3586501 -198741846 - AluSx SINE Alu -19 293 1 1094 317 108 25 chr4 3586501 3586975 -198741372 + L1ME3 LINE L1 3378 3956 -2173 272 275 94 7 chr4 3587247 3587385 -198740962 + L1ME3 LINE L1 4342 4491 -1638 645 243 121 32 chr4 3588141 3588334 -198740013 + L1ME3 LINE L1 4565 4798 -1331 1532 148 10 79 chr4 3588334 3588639 -198739708 + AluJb SINE Alu 1 284 -28 645 243 121 32 chr4 3588639 3588758 -198739589 + L1ME3 LINE L1 4798 4905 -1224 331 275 89 108 chr4 3588792 3589061 -198739286 + L1ME3 LINE L1 5712 5975 -170 385 272 33 65 chr4 3589440 3589624 -198738723 + L1ME2 LINE L1 5689 5866 -296 1889 151 7 3 chr4 3591448 3591746 -198736601 - AluSx SINE Alu -13 299 1 216 347 51 0 chr4 3595453 3595551 -198732796 + L2 LINE L2 3205 3307 -6 258 237 0 0 chr4 3596901 3596960 -198731387 + G-rich Low_complexity Low_complexity 1 59 0 740 139 17 0 chr4 3599935 3600078 -198728269 + FLAM_C SINE Alu 1 145 0 195 129 0 0 chr4 3600850 3600881 -198727466 + (CAGAG)n Simple_repeat Simple_repeat 1 31 0 245 306 93 28 chr4 3601562 3601670 -198726677 + MIR3 SINE MIR 7 121 -87 218 279 25 25 chr4 3602323 3602402 -198725945 - L3 LINE CR1 -96 1481 1403 499 186 224 13 chr4 3602751 3602907 -198725440 + MER46A DNA MER2_type 48 236 0 2236 81 0 7 chr4 3607064 3607360 -198720987 + AluSx SINE Alu 19 312 0 218 247 106 12 chr4 3609351 3609436 -198718911 - MIR3 SINE MIR -3 205 113 222 317 49 0 chr4 3609573 3609655 -198718692 + MIR3 SINE MIR 77 162 -46 202 246 31 15 chr4 3609848 3609913 -198718434 + MIR3 SINE MIR 11 76 -132 209 169 0 78 chr4 3610103 3610180 -198718167 + C-rich Low_complexity Low_complexity 3 73 0 1742 127 20 31 chr4 3611361 3611653 -198716694 - AluJo SINE Alu -18 294 6 449 206 40 16 chr4 3611732 3611858 -198716489 - L1MEc LINE L1 -6231 165 37 325 333 77 27 chr4 3612493 3612676 -198715671 + L1ME2 LINE L1 5970 6161 -3 516 205 169 62 chr4 3614078 3614385 -198713962 - LTR16A1 LTR ERVL 0 457 118 499 240 187 18 chr4 3614536 3614761 -198713586 + L2 LINE L2 59 321 -2993 372 56 42 42 chr4 3614761 3614832 -198713515 + MER4B LTR ERV1 1 71 -539 446 194 20 0 chr4 3615034 3615132 -198713215 - LTR49-int LTR ERV1 -2884 3447 3348 309 200 0 0 chr4 3615193 3615253 -198713094 - LTR49-int LTR ERV1 -2997 3334 3275 460 134 49 120 chr4 3615313 3615390 -198712957 - LTR49-int LTR ERV1 -3059 3272 3208 2093 132 3 19 chr4 3615390 3615708 -198712639 + AluSq SINE Alu 1 313 0 460 134 49 120 chr4 3615708 3615772 -198712575 - LTR49-int LTR ERV1 -3123 3208 3141 6789 62 16 23 chr4 3615805 3616749 -198711598 - SVA Other Other 0 1386 450 6445 56 9 14 chr4 3616780 3617753 -198710594 - SVA Other Other -520 866 1 315 32 143 0 chr4 3617753 3617816 -198710531 + GA-rich Low_complexity Low_complexity 2 73 0 2322 130 33 41 chr4 3617827 3618376 -198709971 + MER4E LTR ERV1 51 766 0 509 274 83 34 chr4 3618445 3618649 -198709698 + L2 LINE L2 651 864 -2450 1295 51 93 0 chr4 3618653 3618868 -198709479 + LTR19A LTR ERV1 7 241 -245 238 237 126 47 chr4 3618890 3619080 -198709267 + L2 LINE L2 860 1064 -2250 225 307 93 13 chr4 3619056 3619206 -198709141 - L3 LINE CR1 -315 1262 1101 * 248 283 160 19 chr4 3619197 3619303 -198709044 + L2 LINE L2 3180 3300 -13 556 167 53 0 chr4 3619318 3619468 -198708879 + (TGGA)n Simple_repeat Simple_repeat 4 161 0 775 150 24 22 chr4 3619498 3620006 -198708341 + (TGGA)n Simple_repeat Simple_repeat 1 509 0 641 182 20 20 chr4 3620025 3620280 -198708067 + (TGGA)n Simple_repeat Simple_repeat 1 255 0 722 153 28 17 chr4 3620309 3620485 -198707862 + (TGGA)n Simple_repeat Simple_repeat 3 180 0 570 217 23 0 chr4 3620505 3620680 -198707667 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 861 146 14 17 chr4 3620709 3621064 -198707283 + (TGGA)n Simple_repeat Simple_repeat 1 353 0 1455 210 10 10 chr4 3621854 3622164 -198706183 + AluJo SINE Alu 1 310 -2 308 299 46 0 chr4 3622562 3622649 -198705698 - MIR SINE MIR -92 170 80 353 330 27 27 chr4 3623682 3623867 -198704480 + L2 LINE L2 3111 3295 -18 724 148 0 0 chr4 3623867 3623982 -198704365 - AluSx SINE Alu -4 308 194 1107 86 0 0 chr4 3623985 3624124 -198704223 - AluSx SINE Alu -174 139 1 752 178 0 30 chr4 3624168 3624303 -198704044 + FLAM_C SINE Alu 3 133 0 380 249 35 56 chr4 3624332 3624529 -198703818 - L1M4 LINE L1 -1492 4654 4462 875 349 69 4 chr4 3624544 3625066 -198703281 - L1M4 LINE L1 -1723 4423 3868 591 258 97 24 chr4 3625312 3625642 -198702705 + MER74B LTR ERVL 213 566 -56 1608 247 119 17 chr4 3625791 3625958 -198702389 + MER69B DNA AcHobo 520 668 -1858 1579 170 53 3 chr4 3625958 3626241 -198702106 - AluJb SINE Alu -15 297 1 1608 247 119 17 chr4 3626241 3626676 -198701671 + MER69B DNA AcHobo 668 1184 -42 217 255 61 0 chr4 3627395 3627479 -198700868 - MIR SINE MIR -60 148 104 203 362 61 43 chr4 3627900 3628063 -198700284 - MIR SINE MIR -81 181 16 346 226 24 0 chr4 3628166 3628250 -198700097 + MIR SINE MIR 77 162 -100 2071 123 6 22 chr4 3628275 3628593 -198699754 + AluSq SINE Alu 1 313 0 817 200 0 24 chr4 3628619 3628784 -198699563 + FAM SINE Alu 1 44 -5 647 178 58 66 chr4 3630096 3630377 -198697970 + MSTD LTR MaLR 2 327 -67 2179 122 0 0 chr4 3630377 3630688 -198697659 - AluSx SINE Alu -1 311 1 647 178 58 66 chr4 3630688 3630707 -198697640 + MSTD LTR MaLR 327 345 -49 540 257 14 7 chr4 3630690 3630838 -198697509 - MLT1C LTR MaLR -285 182 34 * 1848 114 0 29 chr4 3630847 3631119 -198697228 - AluSx SINE Alu -14 298 35 589 251 6 16 chr4 3631169 3631352 -198696995 - HAL1b LINE L1 -882 466 286 353 165 252 68 chr4 3631450 3631553 -198696794 + FLAM_A SINE Alu 3 124 -9 2259 95 7 0 chr4 3631622 3631927 -198696420 - AluSg SINE Alu -3 307 1 1169 195 0 56 chr4 3632321 3632500 -198695847 - AluJo SINE Alu -6 306 149 1664 153 29 52 chr4 3632500 3632808 -198695539 - AluJb SINE Alu -11 301 1 1169 195 0 56 chr4 3632808 3632930 -198695417 - AluJo SINE Alu -163 149 22 2475 103 4 9 chr4 3632937 3633432 -198694915 - MER41B LTR ERV1 -12 542 1 225 61 0 0 chr4 3633433 3633466 -198694881 - AluJo SINE Alu -266 33 1 318 276 264 23 chr4 3633702 3633876 -198694471 + L1ME2 LINE L1 5912 6127 -37 351 127 48 0 chr4 3633882 3633945 -198694402 + MLT1J LTR MaLR 6 71 -396 954 281 16 79 chr4 3634529 3635021 -198693326 + MLT1J LTR MaLR 37 497 -14 622 224 14 7 chr4 3635120 3635263 -198693084 + MER83C LTR ERV1 49 192 -181 238 226 32 0 chr4 3635321 3635383 -198692964 + MER83B LTR ERV1 134 197 -181 820 247 94 0 chr4 3635772 3635995 -198692352 + MER83C LTR ERV1 130 373 0 399 205 0 12 chr4 3636041 3636124 -198692223 - MIR SINE MIR -101 161 80 693 193 0 0 chr4 3638373 3638523 -198689824 + (TCCA)n Simple_repeat Simple_repeat 3 152 0 778 176 4 11 chr4 3638540 3638821 -198689526 + (TCCA)n Simple_repeat Simple_repeat 1 278 0 194 240 0 20 chr4 3638868 3638918 -198689429 - L2 LINE L2 -56 3216 3168 398 222 16 29 chr4 3639119 3639142 -198689205 - ORSL DNA AcHobo 0 275 253 3892 118 11 33 chr4 3639142 3639279 -198689068 - MER4A LTR ERV1 0 600 462 2146 115 0 3 chr4 3639279 3639583 -198688764 - AluSg1 SINE Alu 0 309 7 3892 118 11 33 chr4 3639583 3640058 -198688289 - MER4A LTR ERV1 -138 462 1 398 222 16 29 chr4 3640058 3640235 -198688112 - ORSL DNA AcHobo -22 253 41 3521 163 18 74 chr4 3640728 3641460 -198686887 + LTR8 LTR ERV1 1 691 0 1044 298 73 5 chr4 3643644 3644070 -198684277 + L1MC/D LINE L1 5296 5750 -2058 230 137 41 14 chr4 3644261 3644334 -198684013 + (CA)n Simple_repeat Simple_repeat 2 76 0 331 310 18 0 chr4 3646230 3646343 -198682004 - L1MC4 LINE L1 -7 8035 7921 1906 208 50 2 chr4 3646487 3646968 -198681379 - L1 LINE L1 -2178 3968 3465 721 128 29 87 chr4 3646968 3647140 -198681207 - MSTC LTR MaLR -242 186 25 1669 212 13 18 chr4 3647242 3647624 -198680723 + LTR8 LTR ERV1 312 691 0 1026 301 73 5 chr4 3650432 3650858 -198677489 + L1MC4a LINE L1 5296 5750 -2058 449 144 48 12 chr4 3651049 3651216 -198677131 + (CA)n Simple_repeat Simple_repeat 2 174 0 364 160 38 28 chr4 3651245 3651540 -198676807 + (CA)n Simple_repeat Simple_repeat 1 298 0 380 197 15 47 chr4 3651551 3651834 -198676513 + (CA)n Simple_repeat Simple_repeat 1 273 0 375 140 28 39 chr4 3651863 3652042 -198676305 + (CA)n Simple_repeat Simple_repeat 2 178 0 198 94 19 38 chr4 3652064 3652117 -198676230 + (CA)n Simple_repeat Simple_repeat 1 52 0 350 164 29 29 chr4 3652159 3652330 -198676017 + (CA)n Simple_repeat Simple_repeat 2 172 0 238 175 23 41 chr4 3652406 3652577 -198675770 + (CA)n Simple_repeat Simple_repeat 1 168 0 291 154 21 42 chr4 3652655 3652798 -198675549 + (CA)n Simple_repeat Simple_repeat 1 140 0 342 177 15 48 chr4 3652834 3653385 -198674962 + (CA)n Simple_repeat Simple_repeat 1 532 0 202 192 12 52 chr4 3653405 3653577 -198674770 + (CA)n Simple_repeat Simple_repeat 2 166 0 449 346 181 25 chr4 3653667 3654198 -198674149 + L1MC4a LINE L1 6067 6680 -1128 255 291 24 31 chr4 3654258 3654385 -198673962 + L1MC4 LINE L1 6862 6987 -1055 1027 220 65 17 chr4 3654555 3654983 -198673364 + MLT1D LTR MaLR 1 501 -4 601 346 146 14 chr4 3654986 3655474 -198672873 + L1MC4 LINE L1 7219 7770 -272 1728 152 14 0 chr4 3655703 3655993 -198672354 - AluJb SINE Alu -18 294 1 229 287 15 59 chr4 3657022 3657158 -198671189 - MLT1H LTR MaLR -404 145 16 259 209 15 15 chr4 3657550 3657617 -198670730 + LTR16B LTR ERVL 394 460 -4 294 363 0 0 chr4 3657651 3657830 -198670517 + G-rich Low_complexity Low_complexity 1 179 0 195 207 12 73 chr4 3657844 3657926 -198670421 - L2 LINE L2 -214 3099 3023 1145 165 53 102 chr4 3657931 3658092 -198670255 + L1PA15 LINE L1 5860 5999 -166 2166 108 0 16 chr4 3658092 3658406 -198669941 + AluSg1 SINE Alu 1 309 0 1145 165 53 102 chr4 3658406 3658566 -198669781 + L1PA15 LINE L1 5999 6165 0 448 158 21 0 chr4 3660360 3660455 -198667892 + GA-rich Low_complexity Low_complexity 1 97 0 220 310 42 0 chr4 3660489 3660560 -198667787 + MIR3 SINE MIR 114 187 -21 210 158 0 0 chr4 3661963 3662001 -198666346 + (TAA)n Simple_repeat Simple_repeat 3 40 0 623 244 5 5 chr4 3662008 3662388 -198665959 + (TCCA)n Simple_repeat Simple_repeat 1 380 0 840 158 11 6 chr4 3662410 3662587 -198665760 + (TCCA)n Simple_repeat Simple_repeat 1 178 0 321 355 24 6 chr4 3662794 3662963 -198665384 + (CCCA)n Simple_repeat Simple_repeat 3 174 0 631 127 17 0 chr4 3662972 3663090 -198665257 + (TCCA)n Simple_repeat Simple_repeat 1 120 0 978 130 20 23 chr4 3664269 3664709 -198663638 + (TCCA)n Simple_repeat Simple_repeat 3 616 0 319 282 24 0 chr4 3664935 3665020 -198663327 + MIR SINE MIR 8 94 -168 347 273 93 12 chr4 3666745 3666906 -198661441 - L1ME3A LINE L1 -219 6020 5847 414 209 133 0 chr4 3667008 3667113 -198661234 - L1ME3A LINE L1 -559 5672 5554 548 143 51 41 chr4 3667124 3667222 -198661125 - FLAM_A SINE Alu -7 135 37 701 299 74 52 chr4 3667240 3668025 -198660322 - L1ME3A LINE L1 -707 5532 4732 342 254 0 0 chr4 3668129 3668239 -198660108 + (CA)n Simple_repeat Simple_repeat 2 111 0 471 180 17 133 chr4 3668241 3668474 -198659873 - L1ME3A LINE L1 -1533 4682 4477 1458 214 52 28 chr4 3668503 3668843 -198659504 + MLT2D LTR ERVL 1 352 -62 2294 77 0 0 chr4 3668843 3669128 -198659219 + AluSg SINE Alu 10 294 -16 1458 214 52 28 chr4 3669128 3669151 -198659196 + MLT2D LTR ERVL 352 373 -41 226 302 0 16 chr4 3669152 3669215 -198659132 + (CA)n Simple_repeat Simple_repeat 2 63 0 330 104 0 0 chr4 3669215 3669263 -198659084 + MLT2D LTR ERVL 367 414 0 2025 141 3 3 chr4 3669266 3669571 -198658776 - AluSx SINE Alu -7 305 1 233 314 66 7 chr4 3669597 3669734 -198658613 - L1ME3A LINE L1 -1777 4438 4294 465 340 49 21 chr4 3669750 3670058 -198658289 - L1MEc LINE L1 -4931 1274 987 1927 117 0 0 chr4 3670107 3670373 -198657974 - AluSx SINE Alu -17 295 30 185 169 123 46 chr4 3671121 3671186 -198657161 - L2 LINE L2 -2807 507 438 392 127 0 13 chr4 3673171 3673250 -198655097 + (CA)n Simple_repeat Simple_repeat 1 78 0 352 317 0 65 chr4 3673271 3673394 -198654953 - L1MCa LINE L1 -3971 2970 2856 1530 177 5 124 chr4 3673565 3673960 -198654387 - Tigger3(Golem) DNA MER2_type 0 3029 1 207 218 0 0 chr4 3673971 3674026 -198654321 + (CA)n Simple_repeat Simple_repeat 2 56 0 572 254 19 17 chr4 3674035 3674250 -198654097 - L1MC/D LINE L1 -577 6388 6187 309 325 67 39 chr4 3675021 3675637 -198652710 - L1MC4 LINE L1 0 8042 7315 938 257 70 43 chr4 3675715 3675861 -198652486 - L1MCa LINE L1 -4197 2925 2784 684 67 0 0 chr4 3675861 3675951 -198652396 + (TA)n Simple_repeat Simple_repeat 1 90 0 2300 86 0 0 chr4 3675958 3676249 -198652098 - AluY SINE Alu -20 291 1 938 257 70 43 chr4 3676249 3677015 -198651332 - L1MCa LINE L1 -4343 2779 1729 494 295 52 41 chr4 3677293 3677659 -198650688 - L1MCa LINE L1 -6003 420 51 427 319 47 0 chr4 3677686 3677921 -198650426 - L1ME LINE L1 -4755 1641 1396 824 139 16 4 chr4 3677921 3678439 -198649908 + (TG)n Simple_repeat Simple_repeat 1 524 0 828 249 53 84 chr4 3678475 3678489 -198649858 - L1ME LINE L1 -4917 1298 1285 2221 118 0 0 chr4 3678489 3678793 -198649554 - AluSx SINE Alu -7 305 2 828 249 53 84 chr4 3678793 3679344 -198649003 - L1ME LINE L1 -4930 1285 761 342 0 0 0 chr4 3679344 3679382 -198648965 + (TTTA)n Simple_repeat Simple_repeat 1 38 0 828 249 53 84 chr4 3679382 3679414 -198648933 - L1ME LINE L1 -5454 761 730 510 310 75 29 chr4 3679581 3679929 -198648418 - L1ME LINE L1 -5837 559 196 463 346 67 38 chr4 3680072 3680725 -198647622 - L1MC4a LINE L1 -1883 5925 5254 429 306 52 8 chr4 3680967 3680989 -198647358 - L1MC4a LINE L1 -1087 5059 5039 809 113 38 38 chr4 3680989 3681122 -198647225 - FLAM_C SINE Alu 0 133 1 429 306 52 8 chr4 3681122 3681233 -198647114 - L1MC4a LINE L1 -1107 5039 4920 454 245 71 0 chr4 3681288 3681443 -198646904 + MER92B LTR ERV1 74 239 -397 528 256 8 0 chr4 3682167 3682300 -198646047 - MLT1C LTR MaLR -14 453 320 398 388 0 0 chr4 3682770 3682948 -198645399 + (TG)n Simple_repeat Simple_repeat 1 178 0 547 350 0 0 chr4 3682980 3683343 -198645004 + (TG)n Simple_repeat Simple_repeat 1 363 0 508 343 0 8 chr4 3683370 3683869 -198644478 + (TG)n Simple_repeat Simple_repeat 1 495 0 198 319 0 0 chr4 3683891 3684035 -198644312 + (TG)n Simple_repeat Simple_repeat 1 144 0 499 282 0 39 chr4 3684053 3684234 -198644113 + (TG)n Simple_repeat Simple_repeat 1 174 0 2141 102 0 0 chr4 3684926 3685210 -198643137 - AluSx SINE Alu -20 292 9 322 263 150 0 chr4 3685872 3686005 -198642342 - L2 LINE L2 -511 2803 2651 298 151 0 129 chr4 3687854 3687947 -198640400 - L2 LINE L2 -189 3083 3003 200 297 54 27 chr4 3688006 3688117 -198640230 + MIR SINE MIR 7 120 -142 267 287 130 0 chr4 3688266 3688374 -198639973 - MIR SINE MIR -61 201 80 402 74 0 0 chr4 3688598 3688652 -198639695 + (TTCA)n Simple_repeat Simple_repeat 4 57 0 190 345 95 9 chr4 3688836 3688952 -198639395 - MER5A DNA MER1_type -49 140 15 205 345 129 0 chr4 3689542 3689681 -198638666 + MIR SINE MIR 104 260 -2 513 121 0 0 chr4 3690452 3690535 -198637812 + (TGAG)n Simple_repeat Simple_repeat 1 83 0 1056 163 0 14 chr4 3690548 3691088 -198637259 + (TGAG)n Simple_repeat Simple_repeat 1 357 0 427 301 106 34 chr4 3691300 3691536 -198636811 + MIR SINE MIR 10 262 0 280 263 113 42 chr4 3691624 3691837 -198636510 + L2 LINE L2 2838 3065 -248 267 305 76 29 chr4 3692729 3692834 -198635513 + L2 LINE L2 3159 3268 -4 548 253 57 26 chr4 3693287 3693481 -198634866 - MER63A DNA MER1_type -10 200 1 329 313 12 6 chr4 3693547 3693710 -198634637 + (CA)n Simple_repeat Simple_repeat 1 164 0 681 142 35 0 chr4 3694072 3694241 -198634106 + (TCCA)n Simple_repeat Simple_repeat 4 178 0 724 144 28 31 chr4 3694291 3694648 -198633699 + (TCCA)n Simple_repeat Simple_repeat 1 355 0 843 94 53 0 chr4 3694664 3694835 -198633512 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 853 100 47 0 chr4 3694872 3695042 -198633305 + (TCCA)n Simple_repeat Simple_repeat 3 180 0 874 138 44 3 chr4 3695059 3695409 -198632938 + (TCCA)n Simple_repeat Simple_repeat 1 364 0 253 116 87 0 chr4 3695513 3695582 -198632765 + (TG)n Simple_repeat Simple_repeat 2 76 0 417 144 46 61 chr4 3697162 3697600 -198630747 + (CA)n Simple_repeat Simple_repeat 1 431 0 377 183 30 55 chr4 3697612 3697776 -198630571 + (CA)n Simple_repeat Simple_repeat 1 160 0 202 143 26 65 chr4 3697799 3697953 -198630394 + (CA)n Simple_repeat Simple_repeat 2 149 0 495 108 21 59 chr4 3697975 3698161 -198630186 + (CA)n Simple_repeat Simple_repeat 2 180 0 318 313 142 4 chr4 3698531 3698764 -198629583 + MLT1H LTR MaLR 1 265 -284 2220 128 42 28 chr4 3699172 3699530 -198628817 - THE1B LTR MaLR 0 364 2 1396 219 42 0 chr4 3699758 3700091 -198628256 - MLT1B LTR MaLR -31 359 13 542 342 43 40 chr4 3700839 3701190 -198627157 - L1M4c LINE L1 -3618 2528 2177 404 166 14 48 chr4 3701245 3701390 -198626957 + CT-rich Low_complexity Low_complexity 4 143 0 643 115 0 73 chr4 3701392 3701584 -198626763 + (TCCC)n Simple_repeat Simple_repeat 2 179 0 603 156 15 46 chr4 3701596 3701945 -198626402 + CT-rich Low_complexity Low_complexity 1 337 0 1465 187 13 13 chr4 3701947 3702257 -198626090 + LOR1a LTR ERV1 188 497 0 396 341 105 73 chr4 3702271 3702820 -198625527 - L1M4c LINE L1 -345 1231 701 2692 118 3 0 chr4 3702820 3703194 -198625153 - THE1C LTR MaLR 0 375 1 396 341 105 73 chr4 3703194 3703684 -198624663 - L1M4c LINE L1 -875 701 20 422 267 9 0 chr4 3703913 3704029 -198624318 - MLT1A2 LTR MaLR 0 374 258 829 236 13 81 chr4 3704033 3704342 -198624005 - MLT1A2 LTR MaLR -83 291 4 3897 101 45 62 chr4 3704419 3705064 -198623283 - MER51A LTR ERV1 0 634 1 600 151 0 92 chr4 3705442 3705486 -198622861 + MLT1C LTR MaLR 1 47 -420 1449 147 140 29 chr4 3705486 3705758 -198622589 + AluJo SINE Alu 1 302 0 600 151 0 92 chr4 3705758 3705865 -198622482 + MLT1C LTR MaLR 47 138 -329 988 276 100 22 chr4 3705865 3706248 -198622099 - L1ME LINE L1 -588 5578 5226 1620 168 0 11 chr4 3706248 3706534 -198621813 - AluJb SINE Alu 0 312 30 988 276 100 22 chr4 3706534 3706897 -198621450 - L1ME LINE L1 -940 5226 4755 381 297 182 0 chr4 3707011 3707176 -198621171 + MIR SINE MIR 65 259 -3 434 286 86 0 chr4 3707177 3707317 -198621030 + MIR SINE MIR 5 156 -106 28 0 0 0 chr4 3707693 3707721 -198620626 + AT_rich Low_complexity Low_complexity 1 28 0 295 262 0 78 chr4 3708600 3708841 -198619506 + G-rich Low_complexity Low_complexity 1 222 0 283 402 16 16 chr4 3710027 3710211 -198618136 - MIR SINE MIR -56 206 23 598 298 174 11 chr4 3710804 3711160 -198617187 + L2 LINE L2 2900 3313 0 395 302 11 22 chr4 3711244 3711423 -198616924 + (TGGA)n Simple_repeat Simple_repeat 2 178 0 245 292 18 48 chr4 3711645 3711813 -198616534 + (TGGG)n Simple_repeat Simple_repeat 2 164 0 2217 219 50 9 chr4 3712966 3713545 -198614802 + LTR26 LTR ERV1 1 603 0 248 290 30 40 chr4 3713674 3713774 -198614573 - MIR SINE MIR -56 206 108 183 208 19 57 chr4 3713919 3713972 -198614375 - MIR3 SINE MIR -46 162 112 191 250 0 54 chr4 3714796 3714852 -198613495 + L2 LINE L2 2992 3044 -228 981 248 100 12 chr4 3716809 3717229 -198611118 + MLT1C LTR MaLR 1 457 -10 521 118 0 21 chr4 3717473 3717566 -198610781 + (TCCC)n Simple_repeat Simple_repeat 2 92 0 579 244 72 16 chr4 3719639 3719832 -198608515 - MER21B LTR ERV1 -45 818 615 332 182 39 0 chr4 3719829 3719906 -198608441 - MER21B LTR ERV1 -169 694 615 * 2026 196 70 0 chr4 3719903 3720347 -198608000 - MER21B LTR ERV1 -169 694 220 366 159 0 0 chr4 3720354 3720417 -198607930 - MER21B LTR ERV1 -581 282 220 374 113 0 70 chr4 3720424 3720495 -198607852 - MER21B LTR ERV1 -581 282 217 * 1460 165 14 25 chr4 3720494 3720779 -198607568 - MER21B LTR ERV1 -581 282 1 323 324 99 38 chr4 3720931 3721193 -198607154 + L2 LINE L2 3001 3278 -35 244 350 49 0 chr4 3721309 3721432 -198606915 - MIR SINE MIR -132 130 2 321 288 174 29 chr4 3721552 3721833 -198606514 - L2 LINE L2 -2 3270 2949 317 284 88 10 chr4 3721908 3722102 -198606245 + L1MEc LINE L1 35 243 -6153 4094 269 50 10 chr4 3722174 3723693 -198604654 + L1MEc LINE L1 2167 3700 -2515 441 306 38 25 chr4 3723932 3724089 -198604258 - MIR SINE MIR -66 196 38 1032 191 14 0 chr4 3725284 3725494 -198602853 - Tigger2 DNA MER2_type -25 2693 2481 1979 160 0 0 chr4 3725495 3725807 -198602540 + AluJb SINE Alu 1 312 0 467 262 74 87 chr4 3726007 3726236 -198602111 - HAL1 LINE L1 -1189 1318 1093 361 292 72 41 chr4 3727615 3727810 -198600537 - MIR SINE MIR -2 260 60 571 250 61 80 chr4 3728097 3728473 -198599874 + MLT1B LTR MaLR 7 375 -15 213 325 26 0 chr4 3729197 3729311 -198599036 + (TGAG)n Simple_repeat Simple_repeat 2 118 0 450 336 80 6 chr4 3730492 3730816 -198597531 - LTR16A1 LTR ERVL -51 406 59 312 208 78 0 chr4 3730935 3731012 -198597335 + MLT1A1 LTR MaLR 1 83 -291 1203 200 102 10 chr4 3731232 3731565 -198596782 + MLT1A1 LTR MaLR 43 365 0 338 361 38 13 chr4 3732337 3732495 -198595852 - HAL1b LINE L1 -673 675 514 271 174 37 28 chr4 3734068 3734147 -198594200 + MIR SINE MIR 106 184 -78 196 342 146 19 chr4 3734314 3734630 -198593717 + L2 LINE L2 2842 3197 -75 1328 226 72 0 chr4 3734677 3735036 -198593311 - L1MB3 LINE L1 -23 6160 5776 273 352 40 8 chr4 3735060 3735185 -198593162 - L3 LINE CR1 -90 1487 1359 202 258 21 0 chr4 3735589 3735653 -198592694 + MIR SINE MIR 94 158 -104 459 233 0 0 chr4 3736971 3737100 -198591247 + (TG)n Simple_repeat Simple_repeat 1 129 0 233 305 191 0 chr4 3737117 3737222 -198591125 + MIR SINE MIR 22 146 -62 214 316 235 30 chr4 3737366 3737762 -198590585 + L2 LINE L2 2298 2774 -540 235 250 18 0 chr4 3738202 3738258 -198590089 - MIR3 SINE MIR -43 165 109 474 269 83 0 chr4 3739933 3740089 -198588258 - MER57A LTR ERV1 0 403 235 498 221 31 0 chr4 3740098 3740225 -198588122 - MER57A LTR ERV1 -272 131 1 1210 217 127 42 chr4 3740283 3740693 -198587654 + LTR56 LTR ERV1 1 445 0 203 163 0 61 chr4 3741494 3741543 -198586804 + CT-rich Low_complexity Low_complexity 6 51 0 427 256 51 70 chr4 3741560 3741716 -198586631 - MIR SINE MIR -2 260 108 756 219 12 0 chr4 3743291 3743460 -198584887 - MER41D LTR ERV1 0 557 387 434 271 87 5 chr4 3744747 3744965 -198583382 + MER89 LTR ERV1 1 236 -323 707 35 40 52 chr4 3744965 3745139 -198583208 + (TG)n Simple_repeat Simple_repeat 1 172 0 576 125 0 61 chr4 3747262 3747790 -198580557 + (TG)n Simple_repeat Simple_repeat 1 495 0 384 271 16 8 chr4 3748701 3748823 -198579524 + MER45A DNA AcHobo 37 159 -19 1026 155 3 8 chr4 3749609 3749984 -198578363 + (TCCA)n Simple_repeat Simple_repeat 1 372 0 183 80 0 0 chr4 3750000 3750025 -198578322 + (TTCC)n Simple_repeat Simple_repeat 2 26 0 257 329 125 54 chr4 3750028 3750323 -198578024 - L2 LINE L2 0 3272 2957 945 224 13 47 chr4 3750568 3750800 -198577547 - MER58A DNA MER1_type 0 224 1 1174 277 83 29 chr4 3751331 3751814 -198576533 + MLT1H LTR MaLR 37 545 -4 223 120 20 20 chr4 3751869 3751919 -198576428 + GA-rich Low_complexity Low_complexity 4 53 0 218 214 0 36 chr4 3751967 3752023 -198576324 + GA-rich Low_complexity Low_complexity 2 55 0 856 79 28 17 chr4 3752106 3752283 -198576064 + (CA)n Simple_repeat Simple_repeat 2 180 0 233 384 13 25 chr4 3752872 3753031 -198575316 + L2 LINE L2 2724 2880 -434 189 273 0 0 chr4 3754626 3754670 -198573677 - MIR SINE MIR -3 259 216 698 299 40 26 chr4 3755462 3755810 -198572537 - L1M4 LINE L1 -1241 4905 4553 241 241 17 0 chr4 3756467 3756525 -198571822 + CT-rich Low_complexity Low_complexity 2 60 0 1355 179 50 22 chr4 3756776 3757072 -198571275 - MLT1A2 LTR MaLR 0 374 67 2906 85 0 8 chr4 3757072 3757450 -198570897 + THE1C LTR MaLR 1 375 0 1355 179 50 22 chr4 3757450 3757471 -198570876 - MLT1A2 LTR MaLR -307 67 48 23 0 0 0 chr4 3757854 3757877 -198570470 + AT_rich Low_complexity Low_complexity 1 23 0 401 318 28 5 chr4 3758389 3758600 -198569747 - L1MC4 LINE L1 -1029 7013 6798 1018 126 6 16 chr4 3759118 3759188 -198569159 + (TCCC)n Simple_repeat Simple_repeat 1 249 0 1018 126 6 16 chr4 3759188 3759370 -198568977 + (TCCC)n Simple_repeat Simple_repeat 1 180 0 201 293 0 0 chr4 3760283 3760358 -198567989 + GA-rich Low_complexity Low_complexity 1 75 0 192 380 50 0 chr4 3760713 3760813 -198567534 + MIR SINE MIR 79 183 -79 455 247 0 46 chr4 3762332 3762707 -198565640 + GA-rich Low_complexity Low_complexity 1 357 0 273 325 6 24 chr4 3762664 3762830 -198565517 + G-rich Low_complexity Low_complexity 4 166 0 * 303 186 70 23 chr4 3762751 3762880 -198565467 + (TGAG)n Simple_repeat Simple_repeat 2 136 0 243 243 0 34 chr4 3762884 3763061 -198565286 + GA-rich Low_complexity Low_complexity 4 174 0 1874 131 19 44 chr4 3764599 3764919 -198563428 - AluSx SINE Alu 0 312 1 492 294 37 0 chr4 3764935 3765122 -198563225 - L1MC3 LINE L1 -9 7776 7583 254 191 0 0 chr4 3765242 3765289 -198563058 - L1MC3 LINE L1 -636 7149 7103 586 263 97 64 chr4 3765347 3765720 -198562627 + MLT1D LTR MaLR 6 390 -115 2214 92 0 31 chr4 3766134 3766451 -198561896 + AluY SINE Alu 1 307 -4 1334 209 40 62 chr4 3766501 3766987 -198561360 + MER51A LTR ERV1 1 634 0 318 291 146 25 chr4 3767154 3767312 -198561035 + MIR SINE MIR 8 184 -78 361 385 23 8 chr4 3769124 3769381 -198558966 - HERVL LTR ERVL -1048 4606 4346 363 228 0 0 chr4 3770183 3770275 -198558072 + (CA)n Simple_repeat Simple_repeat 1 92 0 267 316 54 57 chr4 3770542 3770874 -198557473 + L1 LINE L1 3522 3852 -2294 211 279 49 0 chr4 3770931 3770992 -198557355 - L2 LINE L2 0 3313 3250 21 36 0 0 chr4 3770996 3771024 -198557323 + AT_rich Low_complexity Low_complexity 1 28 0 2484 68 0 3 chr4 3771321 3771632 -198556715 + AluY SINE Alu 1 310 -1 355 273 93 19 chr4 3772188 3772349 -198555998 - Charlie8 DNA MER1_type -2184 233 61 971 247 160 9 chr4 3773321 3773665 -198554682 + MSTD LTR MaLR 1 396 0 212 320 102 15 chr4 3774177 3774383 -198553964 - L2 LINE L2 -637 2677 2454 388 344 60 14 chr4 3774880 3775098 -198553249 - MIR SINE MIR -22 240 13 287 287 48 26 chr4 3775933 3776304 -198552043 - L1ME LINE L1 -601 5563 5177 353 343 62 21 chr4 3776424 3776893 -198551454 - L1ME LINE L1 -968 5178 4691 470 294 76 34 chr4 3776896 3777134 -198551213 - L2 LINE L2 0 3313 3066 3843 255 113 40 chr4 3777174 3777651 -198550696 - L1ME2 LINE L1 -1 6163 5722 2162 136 146 11 chr4 3777651 3778027 -198550320 - MSTA LTR MaLR 0 428 2 3843 255 113 40 chr4 3778027 3780077 -198548270 - L1ME2 LINE L1 -442 5722 3443 3550 179 159 90 chr4 3780058 3780594 -198547753 - L1MC3 LINE L1 -3 7782 7285 * 229 322 23 0 chr4 3780594 3780681 -198547666 - MLT1F1 LTR MaLR -442 125 37 3550 179 159 90 chr4 3780681 3781353 -198546994 - L1MC3 LINE L1 -500 7285 6398 420 305 35 6 chr4 3781351 3781525 -198546822 - L1ME2 LINE L1 -2711 3435 3257 * 724 332 47 32 chr4 3781529 3781972 -198546375 - L2 LINE L2 -2152 1162 713 258 267 120 0 chr4 3782114 3782189 -198546158 + MIR SINE MIR 161 244 -18 1716 184 0 28 chr4 3782193 3782513 -198545834 + AluJb SINE Alu 1 311 -1 893 233 76 76 chr4 3782738 3783185 -198545162 - MLT1C LTR MaLR -18 449 3 273 307 50 28 chr4 3783368 3783547 -198544800 + L1ME4a LINE L1 5938 6120 -1 180 0 0 0 chr4 3784387 3784407 -198543940 + (CTG)n Simple_repeat Simple_repeat 1 20 0 516 161 12 43 chr4 3784444 3784606 -198543741 + G-rich Low_complexity Low_complexity 5 161 0 202 310 17 0 chr4 3784668 3784726 -198543621 + (CGGG)n Simple_repeat Simple_repeat 1 59 0 225 208 0 31 chr4 3784824 3784920 -198543427 + (AATTG)n Simple_repeat Simple_repeat 2 94 0 281 276 66 4 chr4 3786649 3786752 -198541595 + MIR SINE MIR 43 148 -60 467 307 67 21 chr4 3787270 3787508 -198540839 + L1MC2 LINE L1 6087 6335 -9 442 223 10 10 chr4 3788376 3788479 -198539868 - MER81 DNA DNA 0 114 12 381 302 71 28 chr4 3788755 3788937 -198539410 + MIR SINE MIR 70 259 -3 243 302 123 12 chr4 3788945 3789128 -198539219 - MIR SINE MIR -38 170 13 264 233 155 39 chr4 3789672 3789775 -198538572 + L2 LINE L2 679 793 -2521 210 342 141 38 chr4 3789989 3790308 -198538039 + L2 LINE L2 2933 3284 -29 197 200 0 0 chr4 3791459 3791499 -198536848 + MIR SINE MIR 107 146 -62 243 0 0 0 chr4 3793242 3793269 -198535078 + (TCCA)n Simple_repeat Simple_repeat 1 27 0 180 217 0 0 chr4 3793321 3793367 -198534980 + (CCCA)n Simple_repeat Simple_repeat 4 49 0 212 235 59 0 chr4 3793765 3793833 -198534514 - L2 LINE L2 -4 3268 3197 298 309 0 19 chr4 3794444 3794562 -198533785 + MIR SINE MIR 33 144 -87 324 292 26 39 chr4 3795754 3795908 -198532439 + L2 LINE L2 3121 3272 0 233 343 86 14 chr4 3796613 3796744 -198531603 - MIR3 SINE MIR -58 150 7 1143 265 60 34 chr4 3796744 3797129 -198531218 + MLT2C1 LTR ERVL 3 397 0 354 301 0 35 chr4 3797389 3797502 -198530845 + MIR SINE MIR 13 121 -141 1616 226 106 47 chr4 3797657 3798147 -198530200 - MLT2B1 LTR ERVL 0 520 2 541 178 11 17 chr4 3798436 3798616 -198529731 + (TG)n Simple_repeat Simple_repeat 1 179 0 602 172 0 32 chr4 3798632 3798818 -198529529 + (TG)n Simple_repeat Simple_repeat 1 180 0 709 153 9 18 chr4 3798841 3799169 -198529178 + (TG)n Simple_repeat Simple_repeat 1 324 0 275 152 0 15 chr4 3799184 3799250 -198529097 + (TG)n Simple_repeat Simple_repeat 1 65 0 430 257 133 9 chr4 3800505 3800782 -198527565 + MLT1C LTR MaLR 47 346 -44 378 301 55 7 chr4 3801424 3801570 -198526777 - L2 LINE L2 -195 3077 2925 525 293 118 84 chr4 3801932 3803568 -198524779 - HAL1 LINE L1 0 2507 816 254 408 25 0 chr4 3803711 3803907 -198524440 + L1MC/D LINE L1 5697 5897 -1911 293 347 48 8 chr4 3806154 3806278 -198522069 + MER5A DNA MER1_type 61 189 0 374 236 39 34 chr4 3806551 3806729 -198521618 + (TGGG)n Simple_repeat Simple_repeat 1 179 0 263 223 62 108 chr4 3807220 3807350 -198520997 - MLT1H LTR MaLR -17 532 421 186 222 0 0 chr4 3807751 3807805 -198520542 + GA-rich Low_complexity Low_complexity 4 57 0 280 338 66 15 chr4 3808693 3808829 -198519518 + MIR SINE MIR 107 249 -13 192 354 18 26 chr4 3809360 3809473 -198518874 - MIR SINE MIR -124 138 27 456 294 47 41 chr4 3809941 3810111 -198518236 - MIR SINE MIR -90 172 2 772 151 0 27 chr4 3810329 3810514 -198517833 + GA-rich Low_complexity Low_complexity 1 180 0 864 141 0 27 chr4 3810529 3810714 -198517633 + (GGGA)n Simple_repeat Simple_repeat 1 180 0 834 164 0 16 chr4 3810708 3810891 -198517456 + GA-rich Low_complexity Low_complexity 1 180 0 * 2556 27 0 0 chr4 3811890 3812187 -198516160 - AluY SINE Alu -14 297 1 252 153 38 99 chr4 3814723 3814854 -198513493 + G-rich Low_complexity Low_complexity 4 126 0 389 188 16 83 chr4 3814874 3815066 -198513281 + G-rich Low_complexity Low_complexity 2 180 0 391 99 25 86 chr4 3815083 3815164 -198513183 + L1MC1 LINE L1 6240 6315 -18 1055 80 0 0 chr4 3815601 3815739 -198512608 + MER85 DNA T2_type 1 138 -1 653 288 40 0 chr4 3817148 3817346 -198511001 + MIR SINE MIR 1 206 -56 239 246 16 0 chr4 3819830 3819891 -198508456 - L2 LINE L2 -70 3243 3182 1643 118 141 0 chr4 3820194 3820457 -198507890 - AluJo SINE Alu -12 300 1 705 295 129 3 chr4 3820689 3821021 -198507326 - HAL1 LINE L1 -628 1879 1506 1196 88 13 0 chr4 3821032 3821191 -198507156 + AluSc SINE Alu 130 290 -19 771 341 156 21 chr4 3821191 3821666 -198506681 - HAL1 LINE L1 -1010 1497 959 190 381 38 19 chr4 3822320 3822480 -198505867 - L2 LINE L2 -564 2750 2588 183 114 0 0 chr4 3822800 3822835 -198505512 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2300 68 0 7 chr4 3822837 3823131 -198505216 - AluY SINE Alu -19 292 1 2116 202 42 13 chr4 3823408 3823859 -198504488 + MLT1C LTR MaLR 2 465 -2 181 292 167 8 chr4 3825079 3825199 -198503148 + MIR3 SINE MIR 12 150 -58 614 302 22 0 chr4 3825742 3825967 -198502380 - MLT1E2 LTR MaLR -17 609 380 977 220 73 32 chr4 3825968 3826281 -198502066 + MLT2D LTR ERVL 5 330 -84 402 57 0 0 chr4 3826282 3826335 -198502012 + (CA)n Simple_repeat Simple_repeat 1 53 0 1040 276 32 34 chr4 3826384 3826764 -198501583 - MLT1E2 LTR MaLR -247 379 1 343 151 82 0 chr4 3827137 3827210 -198501137 - MLT1H LTR MaLR 0 549 471 353 321 18 0 chr4 3827554 3827663 -198500684 + MIR SINE MIR 81 191 -71 493 270 23 23 chr4 3828045 3828219 -198500128 - MLT1K LTR MaLR -21 567 394 331 276 57 0 chr4 3828913 3829036 -198499311 - LTR33 LTR ERVL -308 213 84 330 361 104 17 chr4 3829129 3829359 -198498988 + L1MC4a LINE L1 4422 4671 -1475 371 302 74 18 chr4 3829561 3829948 -198498399 + L1MC4a LINE L1 4909 5306 -840 740 244 14 14 chr4 3829981 3830194 -198498153 - L1MC/D LINE L1 -2294 5514 5302 433 333 165 2 chr4 3830185 3830585 -198497762 + L1MC4a LINE L1 5852 6316 -1492 * 252 0 0 0 chr4 3831194 3831222 -198497125 + (TG)n Simple_repeat Simple_repeat 2 29 0 987 235 20 24 chr4 3831395 3831689 -198496658 + L1MC4 LINE L1 6772 7064 -978 420 176 35 7 chr4 3831755 3831897 -198496450 + (TAGA)n Simple_repeat Simple_repeat 2 147 0 542 325 86 53 chr4 3832187 3832830 -198495517 + L1MC4 LINE L1 7378 8041 -1 202 260 77 39 chr4 3833283 3833387 -198494960 + MER5A DNA MER1_type 7 114 -75 1823 191 91 7 chr4 3833836 3834265 -198494082 - L1MB3 LINE L1 -4 6179 5715 235 254 0 0 chr4 3834814 3834869 -198493478 - L2 LINE L2 -18 3254 3200 312 27 0 0 chr4 3835733 3835770 -198492577 + (TG)n Simple_repeat Simple_repeat 2 38 0 220 310 96 48 chr4 3837635 3837864 -198490483 - L2 LINE L2 -177 3095 2856 222 291 47 12 chr4 3838672 3838758 -198489589 - MIR3 SINE MIR -14 194 106 262 147 35 78 chr4 3838924 3839040 -198489307 + (CCCTAA)n Simple_repeat Simple_repeat 6 116 0 4279 167 12 14 chr4 3839119 3839842 -198488505 + MER72 LTR ERV1 1 722 0 436 239 11 0 chr4 3839860 3839948 -198488399 + L2 LINE L2 3224 3312 -1 622 181 97 68 chr4 3840028 3840249 -198488098 - MLT1B LTR MaLR -25 480 136 1053 139 0 11 chr4 3940272 3940810 -198387537 + (CATTC)n Satellite Satellite 1 532 0 1086 124 0 5 chr4 3940821 3941255 -198387092 + (CATTC)n Satellite Satellite 1 431 0 1110 127 0 0 chr4 3941299 3941659 -198386688 + (CATTC)n Satellite Satellite 1 360 0 306 147 0 0 chr4 3941682 3941750 -198386597 + (CATTC)n Satellite Satellite 2 69 0 1093 129 2 27 chr4 3941891 3942434 -198385913 + (CATTC)n Satellite Satellite 1 529 0 945 131 0 16 chr4 3942464 3942828 -198385519 + (CATTC)n Satellite Satellite 1 359 0 1110 100 0 0 chr4 3942869 3943049 -198385298 + (CATTC)n Satellite Satellite 1 180 0 514 164 0 51 chr4 3943065 3943242 -198385105 + (CATTC)n Satellite Satellite 2 169 0 1068 115 0 0 chr4 3943347 3943611 -198384736 + (CATTC)n Satellite Satellite 1 264 0 927 139 0 0 chr4 3943622 3943802 -198384545 + (CATTC)n Satellite Satellite 1 180 0 781 129 6 6 chr4 3943818 3943981 -198384366 + (CATTC)n Satellite Satellite 2 164 0 1101 105 0 0 chr4 3943993 3944342 -198384005 + (CATTC)n Satellite Satellite 1 349 0 264 30 0 0 chr4 3944353 3944386 -198383961 + (CATTC)n Satellite Satellite 2 34 0 1092 112 0 25 chr4 3944398 3944841 -198383506 + (CATTC)n Satellite Satellite 1 432 0 781 129 6 6 chr4 3944853 3945016 -198383331 + (CATTC)n Satellite Satellite 2 164 0 1044 104 0 4 chr4 3945028 3945258 -198383089 + (CATTC)n Satellite Satellite 2 230 0 1104 130 0 8 chr4 3945277 3945637 -198382710 + (CATTC)n Satellite Satellite 1 358 0 1122 100 0 0 chr4 3945681 3945861 -198382486 + (CATTC)n Satellite Satellite 1 180 0 1068 106 0 0 chr4 3945872 3946051 -198382296 + (CATTC)n Satellite Satellite 2 180 0 1035 146 2 6 chr4 3946072 3946586 -198381761 + (CATTC)n Satellite Satellite 1 511 0 320 43 22 0 chr4 3946691 3946737 -198381610 + (GAATG)n Satellite Satellite 2 48 0 882 131 0 0 chr4 3946749 3946917 -198381430 + (GAATG)n Satellite Satellite 2 169 0 1081 105 4 4 chr4 3946929 3947182 -198381165 + (GAATG)n Satellite Satellite 1 253 0 938 117 0 6 chr4 3947197 3947368 -198380979 + (GAATG)n Satellite Satellite 2 171 0 282 29 0 0 chr4 3947383 3947418 -198380929 + (GAATG)n Satellite Satellite 2 36 0 787 136 6 6 chr4 3947446 3947622 -198380725 + (GAATG)n Satellite Satellite 2 177 0 876 149 0 0 chr4 3947634 3947808 -198380539 + (GAATG)n Satellite Satellite 1 174 0 360 111 0 0 chr4 3947819 3947882 -198380465 + (GAATG)n Satellite Satellite 2 64 0 1311 85 0 5 chr4 3947903 3948452 -198379895 + (GAATG)n Satellite Satellite 2 721 0 390 159 0 0 chr4 3948464 3948552 -198379795 + (GAATG)n Satellite Satellite 2 89 0 1026 132 0 13 chr4 3948568 3949212 -198379135 + (GAATG)n Satellite Satellite 1 813 0 855 111 0 36 chr4 3949340 3949620 -198378727 + (GAATG)n Satellite Satellite 1 269 0 270 132 0 0 chr4 3949631 3949684 -198378663 + (GAATG)n Satellite Satellite 2 54 0 1062 99 0 0 chr4 3949696 3949867 -198378480 + (GAATG)n Satellite Satellite 4 174 0 929 128 0 23 chr4 3949898 3950509 -198377838 + (GAATG)n Satellite Satellite 1 773 0 881 124 0 27 chr4 3950525 3950710 -198377637 + (GAATG)n Satellite Satellite 1 180 0 951 110 0 0 chr4 3950729 3950934 -198377413 + (GAATG)n Satellite Satellite 1 205 0 618 189 0 0 chr4 3950949 3951124 -198377223 + (GAATG)n Satellite Satellite 2 176 0 1026 122 0 0 chr4 3951145 3951325 -198377022 + (GAATG)n Satellite Satellite 1 180 0 954 121 0 0 chr4 3951336 3951544 -198376803 + (GAATG)n Satellite Satellite 1 208 0 1047 112 0 0 chr4 3951560 3951739 -198376608 + (GAATG)n Satellite Satellite 2 180 0 268 169 12 12 chr4 3951751 3951834 -198376513 + (GAATG)n Satellite Satellite 2 84 0 991 106 6 6 chr4 3951845 3952024 -198376323 + (GAATG)n Satellite Satellite 2 180 0 1122 100 0 0 chr4 3952035 3952215 -198376132 + (GAATG)n Satellite Satellite 1 180 0 939 153 0 0 chr4 3952259 3952622 -198375725 + (GAATG)n Satellite Satellite 1 363 0 969 146 0 2 chr4 3952638 3952957 -198375390 + (GAATG)n Satellite Satellite 1 498 0 858 107 0 0 chr4 3952972 3953122 -198375225 + (GAATG)n Satellite Satellite 2 151 0 1140 101 0 0 chr4 3953133 3953311 -198375036 + (GAATG)n Satellite Satellite 3 180 0 261 155 0 0 chr4 3953327 3953385 -198374962 + (GAATG)n Satellite Satellite 4 61 0 1014 121 0 11 chr4 3953403 3953767 -198374580 + (GAATG)n Satellite Satellite 1 538 0 1014 155 0 0 chr4 3953778 3954197 -198374150 + (GAATG)n Satellite Satellite 1 419 0 1132 77 5 5 chr4 3954208 3954417 -198373930 + (GAATG)n Satellite Satellite 1 209 0 1191 81 0 0 chr4 3954428 3954601 -198373746 + (GAATG)n Satellite Satellite 2 174 0 383 170 10 0 chr4 3954614 3954714 -198373633 + (GAATG)n Satellite Satellite 2 102 0 270 284 15 0 chr4 4155307 4155374 -198172973 + MER112 DNA MER1_type 18 85 -175 1502 128 54 0 chr4 4155459 4155701 -198172646 - AluJo SINE Alu -57 255 1 2010 127 0 13 chr4 4155711 4156026 -198172321 - AluSx SINE Alu -1 311 1 1976 123 3 13 chr4 4156038 4156354 -198171993 - AluSq SINE Alu 0 313 1 180 333 78 31 chr4 4157317 4157446 -198170901 + MIR3 SINE MIR 11 145 -63 468 125 14 0 chr4 4158301 4158373 -198169974 - AluS SINE Alu -238 74 2 1926 255 30 11 chr4 4158373 4159369 -198168978 - L1MB3 LINE L1 -351 5832 4818 1940 113 3 3 chr4 4159414 4159715 -198168632 + AluSp SINE Alu 1 301 -12 1102 216 2 121 chr4 4159785 4159992 -198168355 - L1MA4 LINE L1 -170 6130 5900 1482 179 0 4 chr4 4159992 4160272 -198168075 - AluSx SINE Alu -32 280 2 1102 216 2 121 chr4 4160272 4160314 -198168033 - L1MA4 LINE L1 -400 5900 5855 2633 20 0 0 chr4 4160314 4160615 -198167732 + AluY SINE Alu 11 311 0 1102 216 2 121 chr4 4160615 4160777 -198167570 - L1MA4 LINE L1 -445 5855 5767 1973 124 0 31 chr4 4160963 4161286 -198167061 + AluSp SINE Alu 1 313 0 380 228 74 74 chr4 4161429 4161578 -198166769 + MER5B DNA MER1_type 25 173 -5 697 228 46 0 chr4 4161681 4161878 -198166469 - MER6B DNA MER2_type 0 210 5 2224 108 0 6 chr4 4164312 4164627 -198163720 - AluSq SINE Alu 0 313 1 594 233 29 86 chr4 4164694 4164784 -198163563 + L1MEd LINE L1 23 117 -6002 2027 105 11 0 chr4 4164784 4165070 -198163277 + AluSq SINE Alu 1 289 -24 243 0 0 0 chr4 4165075 4165102 -198163245 + (TAAAA)n Simple_repeat Simple_repeat 3 29 0 594 233 29 86 chr4 4165102 4165215 -198163132 + L1MEd LINE L1 121 220 -5899 1102 267 58 47 chr4 4165276 4165513 -198162834 + L1MEd LINE L1 329 575 -5544 2123 86 17 3 chr4 4165513 4165803 -198162544 + AluSq SINE Alu 1 294 -19 1102 267 58 47 chr4 4165803 4166010 -198162337 + L1MEd LINE L1 575 778 -5341 341 247 0 12 chr4 4166094 4166179 -198162168 + MLT1E LTR MaLR 36 119 -474 626 234 0 23 chr4 4166179 4166377 -198161970 - FLAM_C SINE Alu 0 143 2 2063 100 21 0 chr4 4166387 4166676 -198161671 - AluSx SINE Alu -17 295 1 236 263 13 40 chr4 4166684 4166760 -198161587 + MLT1E3 LTR MaLR 12 85 -569 327 277 37 9 chr4 4166775 4166990 -198161357 + MLT1E3 LTR MaLR 193 397 -227 1835 206 101 30 chr4 4166994 4168096 -198160251 - SATR1 Satellite Satellite -20 1179 1 315 211 11 63 chr4 4168172 4168362 -198159985 + (TTA)n Simple_repeat Simple_repeat 1 180 0 2082 206 144 13 chr4 4168476 4169692 -198158655 - SATR1 Satellite Satellite -24 1374 1 2145 192 108 12 chr4 4169730 4170524 -198157823 - SATR1 Satellite Satellite -2 870 1 25057 101 13 14 chr4 4170878 4174665 -198153682 + HERVE LTR ERV1 1108 4945 -2868 2135 204 106 2 chr4 4174671 4175920 -198152427 - SATR1 Satellite Satellite 0 1379 1 2055 155 111 40 chr4 4175937 4176498 -198151849 - SATR1 Satellite Satellite 0 600 1 892 219 286 9 chr4 4176528 4176857 -198151490 - SATR1 Satellite Satellite -3 467 48 1305 101 29 14 chr4 4176861 4177068 -198151279 - AluSq SINE Alu -91 222 13 4057 107 35 2 chr4 4178053 4178688 -198149659 - L1PA5 LINE L1 -32 6122 5467 2086 123 0 3 chr4 4178867 4179169 -198149178 - AluSg SINE Alu -9 301 1 1796 237 24 26 chr4 4179172 4179640 -198148707 - MLT1C LTR MaLR 0 467 1 2674 142 19 54 chr4 4179648 4179773 -198148574 + L1MA8 LINE L1 5719 5847 -444 1678 160 3 35 chr4 4179773 4179915 -198148432 + AluJb SINE Alu 1 146 -166 1984 75 104 4 chr4 4179915 4180195 -198148152 + AluSp SINE Alu 2 309 -4 1678 160 3 35 chr4 4180195 4180365 -198147982 + AluJb SINE Alu 146 303 -9 2674 142 19 54 chr4 4180365 4180760 -198147587 + L1MA8 LINE L1 5847 6221 -70 7558 111 54 11 chr4 4180765 4181921 -198146426 - HSMAR2 DNA Mariner -5 1297 93 309 262 123 41 chr4 4182432 4182554 -198145793 - MIR SINE MIR -7 255 124 760 129 313 0 chr4 4182559 4182706 -198145641 - MER46A DNA MER2_type 0 236 44 198 274 39 0 chr4 4182728 4182779 -198145568 - MIR SINE MIR -165 97 45 23 0 0 0 chr4 4183036 4183059 -198145288 + AT_rich Low_complexity Low_complexity 1 23 0 873 136 8 0 chr4 4183634 4183766 -198144581 + FLAM_A SINE Alu 1 133 0 202 308 70 64 chr4 4183958 4184130 -198144217 - L2 LINE L2 -3061 253 81 1131 183 0 24 chr4 4184931 4185144 -198143203 + AluJo SINE Alu 85 292 -20 1802 149 3 13 chr4 4186242 4186543 -198141804 + AluJb SINE Alu 1 298 -14 271 284 65 7 chr4 4186551 4186706 -198141641 + L1ME4a LINE L1 5956 6119 -2 490 264 87 5 chr4 4186730 4186938 -198141409 + L1MC4a LINE L1 5674 5898 -1910 892 253 80 118 chr4 4186943 4187579 -198140768 + L1ME3A LINE L1 5559 6170 0 2099 104 3 28 chr4 4188286 4188604 -198139743 + AluSp SINE Alu 1 310 -3 544 276 144 0 chr4 4189164 4189338 -198139009 + MIR SINE MIR 13 211 -51 2018 119 3 19 chr4 4189386 4189698 -198138649 - AluSx SINE Alu -5 307 1 380 201 166 14 chr4 4189805 4189944 -198138403 + MER106B DNA MER1_type 865 1024 -35 292 43 109 0 chr4 4189937 4189983 -198138364 - MER106A DNA MER1_type -13 223 173 * 2193 102 0 0 chr4 4190014 4190309 -198138038 - AluSq SINE Alu -18 295 1 212 280 224 28 chr4 4190355 4190462 -198137885 - MER5B DNA MER1_type 0 178 51 2374 41 0 10 chr4 4190581 4190872 -198137475 - AluY SINE Alu -23 288 1 214 358 0 0 chr4 4191250 4191331 -198137016 + MIR SINE MIR 59 139 -69 1847 131 13 23 chr4 4191684 4191989 -198136358 + AluJb SINE Alu 1 302 -10 509 138 0 0 chr4 4193168 4193255 -198135092 - L1MA9 LINE L1 0 6312 6226 1147 135 53 55 chr4 4193266 4193556 -198134791 - L1MA9 LINE L1 -15 6285 6007 191 175 79 79 chr4 4193560 4193623 -198134724 + L2 LINE L2 3202 3264 -8 2039 77 0 58 chr4 4194244 4194554 -198133793 - AluSg SINE Alu -18 292 1 286 236 89 102 chr4 4194596 4194753 -198133594 + MIR3 SINE MIR 36 190 -18 408 268 126 35 chr4 4195186 4195384 -198132963 - L1MC/D LINE L1 -2018 5790 5575 300 266 65 81 chr4 4196505 4196629 -198131718 - L2 LINE L2 -14 3258 3137 181 200 25 0 chr4 4196672 4196712 -198131635 - L2 LINE L2 -1 3271 3231 2060 102 23 0 chr4 4197001 4197304 -198131043 + AluSg SINE Alu 1 310 0 2005 116 9 38 chr4 4197880 4198200 -198130147 + AluSq SINE Alu 1 311 -2 326 289 250 19 chr4 4198344 4198552 -198129795 + MIR SINE MIR 7 262 0 921 253 37 17 chr4 4199144 4199385 -198128962 + MIR SINE MIR 17 262 0 22 0 0 0 chr4 4199423 4199445 -198128902 + AT_rich Low_complexity Low_complexity 1 22 0 363 169 26 39 chr4 4199557 4199634 -198128713 + MIR SINE MIR 187 262 0 1395 80 0 50 chr4 4199805 4200005 -198128342 - AluSc SINE Alu -13 296 107 2507 55 0 0 chr4 4200006 4200313 -198128034 - AluY SINE Alu -4 307 1 312 240 69 98 chr4 4200313 4200517 -198127830 - L1MC/D LINE L1 -515 5606 5409 3111 81 39 9 chr4 4200956 4201348 -198126999 + MLT2A1 LTR ERVL 1 409 -35 318 106 0 0 chr4 4201348 4201395 -198126952 + (TA)n Simple_repeat Simple_repeat 2 48 0 3111 81 39 9 chr4 4201395 4201433 -198126914 + MLT2A1 LTR ERVL 409 444 0 272 197 13 53 chr4 4201445 4201476 -198126871 + (TAA)n Simple_repeat Simple_repeat 2 33 -41 805 153 0 0 chr4 4201476 4201594 -198126753 + FLAM_C SINE Alu 1 118 -15 272 197 13 53 chr4 4201594 4201638 -198126709 + (TAA)n Simple_repeat Simple_repeat 33 74 0 275 311 19 0 chr4 4201791 4201897 -198126450 + LTR16C LTR ERVL 17 124 -367 1994 168 109 26 chr4 4202735 4203017 -198125330 - LTR32 LTR ERVL 0 471 141 180 0 0 0 chr4 4203017 4203037 -198125310 + (CAGGA)n Simple_repeat Simple_repeat 5 24 0 1994 168 109 26 chr4 4203037 4203176 -198125171 - LTR32 LTR ERVL -330 141 15 632 253 104 22 chr4 4203179 4203361 -198124986 + MIR SINE MIR 47 243 -19 380 264 11 0 chr4 4203574 4203661 -198124686 - MIR SINE MIR -60 202 115 2187 104 0 0 chr4 4203937 4204235 -198124112 + AluSx SINE Alu 1 298 -14 648 174 0 3 chr4 4204235 4204350 -198123997 - LTR18A LTR ERVL -6 351 248 715 286 61 5 chr4 4204503 4204699 -198123648 - LTR18A LTR ERVL -147 210 4 398 272 48 48 chr4 4204812 4204959 -198123388 - MER117 DNA MER1_type -49 148 2 3984 99 5 0 chr4 4205176 4205731 -198122616 + L1PA10 LINE L1 5611 6168 0 21 0 0 0 chr4 4206078 4206099 -198122248 + GC_rich Low_complexity Low_complexity 1 21 0 1896 187 118 1 chr4 4206710 4207442 -198120905 - SATR1 Satellite Satellite -2 817 1 35 24 0 0 chr4 4207442 4207484 -198120863 + AT_rich Low_complexity Low_complexity 1 42 0 378 236 11 35 chr4 4207534 4207708 -198120639 + (TAA)n Simple_repeat Simple_repeat 3 172 0 22 35 0 0 chr4 4207755 4207784 -198120563 + AT_rich Low_complexity Low_complexity 1 29 0 1734 203 114 31 chr4 4207830 4208830 -198119517 + SATR1 Satellite Satellite 1 1083 -131 3478 219 16 62 chr4 4209103 4210119 -198118228 - LTR5 LTR ERVK 0 969 1 34 24 0 0 chr4 4210580 4210621 -198117726 + AT_rich Low_complexity Low_complexity 1 41 0 2774 245 24 39 chr4 4210632 4210882 -198117465 - L1MB3 LINE L1 -30 6153 5901 1914 124 36 0 chr4 4210882 4211156 -198117191 - AluSx SINE Alu -17 295 12 2774 245 24 39 chr4 4211156 4211256 -198117091 - L1MB3 LINE L1 -282 5901 5801 230 81 27 0 chr4 4211256 4211293 -198117054 + (TTTG)n Simple_repeat Simple_repeat 1 38 0 1708 178 0 3 chr4 4211295 4211588 -198116759 - AluSx SINE Alu -12 300 9 2774 245 24 39 chr4 4211588 4212589 -198115758 - L1MB3 LINE L1 -383 5800 4818 2109 122 6 3 chr4 4212634 4212946 -198115401 + AluSp SINE Alu 1 313 0 1187 214 18 68 chr4 4213032 4213231 -198115116 - L1MA4 LINE L1 -170 6130 5958 1691 163 3 3 chr4 4213231 4213514 -198114833 - AluSx SINE Alu -29 283 1 1187 214 18 68 chr4 4213514 4213697 -198114650 - L1MA4 LINE L1 -342 5958 5767 282 259 105 35 chr4 4213735 4213878 -198114469 + HsTC2 DNA Tc2 1631 1783 -115 1971 151 0 34 chr4 4213883 4214207 -198114140 + AluSp SINE Alu 1 313 0 309 313 20 14 chr4 4214349 4214496 -198113851 + MER5B DNA MER1_type 25 172 -6 701 230 46 0 chr4 4214600 4214796 -198113551 - MER6B DNA MER2_type -1 209 5 1304 146 27 18 chr4 4216686 4216906 -198111441 + AluSq SINE Alu 1 222 -91 1945 186 119 24 chr4 4216911 4218768 -198109579 + SATR1 Satellite Satellite 1 2035 -62 1683 211 110 27 chr4 4218779 4219347 -198109000 + SATR1 Satellite Satellite 1 615 -20 27241 104 11 10 chr4 4219347 4223402 -198104945 - HERVE LTR ERV1 -2648 5165 1108 239 207 7 64 chr4 4223456 4223596 -198104751 + (TAA)n Simple_repeat Simple_repeat 1 132 0 1819 217 113 12 chr4 4223749 4225505 -198102842 + SATR1 Satellite Satellite 1 1933 -130 25122 108 12 12 chr4 4225512 4229344 -198099003 - HERVE LTR ERV1 -2869 4944 1110 292 219 5 59 chr4 4229407 4229594 -198098753 + (TAA)n Simple_repeat Simple_repeat 2 178 0 22 70 0 0 chr4 4229597 4229640 -198098707 + AT_rich Low_complexity Low_complexity 1 43 0 1404 240 122 40 chr4 4229687 4230679 -198097668 + SATR1 Satellite Satellite 1 1073 -144 554 227 258 2 chr4 4230780 4231056 -198097291 + SATR1 Satellite Satellite 1 346 -144 806 204 251 57 chr4 4231114 4231521 -198096826 + SATR1 Satellite Satellite 1 485 -2 863 235 206 40 chr4 4231541 4232838 -198095509 + SATR1 Satellite Satellite 1 1512 -405 2039 128 7 3 chr4 4234529 4234833 -198093514 + AluSq SINE Alu 1 305 -8 186 276 105 13 chr4 4234926 4235002 -198093345 - L2 LINE L2 -32 3240 3158 1904 103 0 8 chr4 4235256 4235517 -198092830 - AluSg SINE Alu -51 259 1 269 371 48 14 chr4 4235881 4236091 -198092256 + MIR SINE MIR 32 248 -14 34 0 0 0 chr4 4236879 4236913 -198091434 + AT_rich Low_complexity Low_complexity 1 34 0 2867 244 23 32 chr4 4236933 4237180 -198091167 - L1MB3 LINE L1 -32 6151 5903 1984 161 0 0 chr4 4237180 4237485 -198090862 - AluSx SINE Alu -7 305 1 2867 244 23 32 chr4 4237485 4237587 -198090760 - L1MB3 LINE L1 -280 5903 5802 2058 130 3 3 chr4 4237587 4237914 -198090433 - AluSx SINE Alu 0 327 1 2867 244 23 32 chr4 4237914 4238907 -198089440 - L1MB3 LINE L1 -381 5802 4818 2308 104 3 3 chr4 4238952 4239261 -198089086 + AluSp SINE Alu 1 309 -4 1151 199 2 108 chr4 4239340 4239563 -198088784 - L1MA4 LINE L1 -170 6130 5968 1682 187 0 3 chr4 4239563 4239847 -198088500 - AluSx SINE Alu -29 283 1 1151 199 2 108 chr4 4239847 4240030 -198088317 - L1MA4 LINE L1 -332 5968 5767 300 259 101 29 chr4 4240072 4240211 -198088136 + HsTC2 DNA Tc2 1637 1785 -113 2183 108 0 57 chr4 4240216 4240548 -198087799 + AluSp SINE Alu 1 313 0 339 272 88 0 chr4 4240743 4240857 -198087490 + MER5B DNA MER1_type 50 173 -5 320 173 37 12 chr4 4240961 4241042 -198087305 - MER6 DNA MER2_type 0 865 783 221 297 31 0 chr4 4242216 4242280 -198086067 + MER91 DNA MER1_type 125 190 0 1601 203 22 30 chr4 4242442 4242807 -198085540 - MLT1A1 LTR MaLR -3 362 1 739 313 114 16 chr4 4243365 4243863 -198084484 - L1ME3A LINE L1 -208 5962 5416 322 274 10 70 chr4 4244369 4244570 -198083777 + L1ME4a LINE L1 5676 5864 -257 223 320 152 8 chr4 4244604 4244729 -198083618 - MER5A DNA MER1_type -3 186 44 * 380 291 90 8 chr4 4244619 4244753 -198083594 + MER5A DNA MER1_type 37 181 -8 2308 113 0 0 chr4 4244902 4245202 -198083145 + AluSq SINE Alu 1 300 -13 1579 173 40 23 chr4 4245215 4245388 -198082959 - AluJo SINE Alu -7 305 123 216 0 0 0 chr4 4245388 4245412 -198082935 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1579 173 40 23 chr4 4245412 4245538 -198082809 - AluJo SINE Alu -189 123 1 331 214 60 0 chr4 4245580 4245664 -198082683 - MER20 DNA MER1_type -12 207 119 875 234 5 0 chr4 4245689 4245903 -198082444 + L1MA4 LINE L1 6071 6285 -15 33 0 0 0 chr4 4245910 4245943 -198082404 + AT_rich Low_complexity Low_complexity 1 33 0 288 194 32 16 chr4 4245943 4246005 -198082342 - MER20 DNA MER1_type -152 67 5 29 0 0 0 chr4 4246203 4246232 -198082115 + AT_rich Low_complexity Low_complexity 1 29 0 554 297 76 34 chr4 4246264 4246763 -198081584 + L1ME4a LINE L1 5578 6097 -24 239 286 43 0 chr4 4247849 4247919 -198080428 + MIR SINE MIR 117 189 -73 1477 268 90 39 chr4 4248096 4248660 -198079687 + MLT1E LTR MaLR 1 593 0 1764 144 25 9 chr4 4248705 4248778 -198079569 - MER2 DNA MER2_type 0 345 275 2243 114 3 13 chr4 4248778 4249093 -198079254 + AluSx SINE Alu 1 312 0 1764 144 25 9 chr4 4249093 4249338 -198079009 - MER2 DNA MER2_type -70 275 22 1060 293 157 39 chr4 4249340 4250490 -198077857 + L2 LINE L2 2006 3308 -5 225 250 19 0 chr4 4250490 4250542 -198077805 + GA-rich Low_complexity Low_complexity 1 53 0 1402 249 99 43 chr4 4250594 4251107 -198077240 + MLT1H1 LTR MaLR 14 555 0 293 265 20 20 chr4 4251108 4251210 -198077137 + L2 LINE L2 2291 2392 -922 1361 193 68 0 chr4 4251326 4251647 -198076700 + L1MB3 LINE L1 5839 6181 -2 21 26 0 26 chr4 4252476 4252493 -198075854 + AT_rich Low_complexity Low_complexity 1 17 -21 2119 118 0 3 chr4 4252493 4252780 -198075567 + AluSx SINE Alu 1 286 -26 21 26 0 26 chr4 4252780 4252801 -198075546 + AT_rich Low_complexity Low_complexity 17 38 0 248 284 95 14 chr4 4252938 4253012 -198075335 + L2 LINE L2 3188 3267 -5 394 281 98 66 chr4 4253503 4253930 -198074417 + L2 LINE L2 2553 3008 -264 236 105 0 0 chr4 4254018 4254056 -198074291 + MLT1J2 LTR MaLR 72 109 -341 371 308 60 34 chr4 4254076 4254342 -198074005 + MLT1J LTR MaLR 237 509 -2 328 306 96 25 chr4 4254428 4254585 -198073762 + L2 LINE L2 3097 3264 -8 2396 154 16 34 chr4 4254666 4254729 -198073618 + L1PA16 LINE L1 5724 5787 -379 1765 137 10 58 chr4 4254729 4254857 -198073490 + AluJo SINE Alu 6 139 -173 2072 108 0 17 chr4 4254857 4255152 -198073195 + AluSq SINE Alu 1 290 -23 1765 137 10 58 chr4 4255152 4255336 -198073011 + AluJo SINE Alu 139 303 -9 2396 154 16 34 chr4 4255336 4255720 -198072627 + L1PA16 LINE L1 5787 6163 -3 191 88 29 0 chr4 4256958 4256992 -198071355 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 469 248 0 54 chr4 4257011 4257160 -198071187 + L1ME4a LINE L1 5965 6105 -16 2072 103 7 10 chr4 4257496 4257796 -198070551 + AluSx SINE Alu 1 299 -13 351 0 0 0 chr4 4257825 4257864 -198070483 + (GA)n Simple_repeat Simple_repeat 1 39 0 244 277 12 12 chr4 4257870 4257953 -198070394 + L1ME LINE L1 5741 5823 -298 1763 168 3 0 chr4 4257991 4258300 -198070047 - AluJo SINE Alu -2 310 1 243 305 84 0 chr4 4258521 4258616 -198069731 - MER112 DNA MER1_type -131 129 27 1969 69 76 4 chr4 4258803 4259079 -198069268 + AluY SINE Alu 1 296 -15 1480 181 0 22 chr4 4259133 4259448 -198068899 - AluJo SINE Alu -1 311 4 221 224 94 47 chr4 4259543 4259628 -198068719 - MIR3 SINE MIR -7 201 113 * 430 294 87 0 chr4 4259612 4259738 -198068609 + MIR SINE MIR 28 164 -98 2091 117 0 0 chr4 4259740 4260060 -198068287 + AluSg SINE Alu 1 320 0 456 19 0 0 chr4 4260061 4260114 -198068233 + (CA)n Simple_repeat Simple_repeat 2 54 0 515 233 57 62 chr4 4260272 4260448 -198067899 - MIR3 SINE MIR -4 204 30 615 274 65 47 chr4 4261701 4261978 -198066369 + MLT1L LTR MaLR 201 482 -133 187 248 22 146 chr4 4261980 4262117 -198066230 - MIR SINE MIR -141 121 2 213 39 0 0 chr4 4263314 4263340 -198065007 + (TG)n Simple_repeat Simple_repeat 1 26 0 2176 94 3 10 chr4 4263348 4263655 -198064692 - AluSg SINE Alu -5 305 1 281 297 94 23 chr4 4263887 4264015 -198064332 + MER34B LTR ERV1 23 159 -406 553 261 42 50 chr4 4264127 4264368 -198063979 + MER34B LTR ERV1 324 562 -3 225 109 0 109 chr4 4264369 4264415 -198063932 - MIR SINE MIR -115 147 107 260 279 38 0 chr4 4264883 4264962 -198063385 + MER117 DNA MER1_type 59 140 -57 423 280 143 23 chr4 4265281 4265456 -198062891 + MIR SINE MIR 57 252 -10 189 293 35 0 chr4 4265467 4265525 -198062822 - L2 LINE L2 0 3272 3213 235 306 42 0 chr4 4265558 4265630 -198062717 - MIR SINE MIR -10 252 178 397 281 169 47 chr4 4265813 4266133 -198062214 + L1ME4a LINE L1 5747 6105 -16 3059 151 27 23 chr4 4266138 4266322 -198062025 + L1MB2 LINE L1 5606 5788 -383 2559 112 112 109 chr4 4266322 4266984 -198061363 - MER4A LTR ERV1 0 664 1 3059 151 27 23 chr4 4266984 4267363 -198060984 + L1MB2 LINE L1 5788 6171 0 302 328 25 8 chr4 4268035 4268157 -198060190 + L2 LINE L2 2670 2793 -521 668 303 78 18 chr4 4268161 4268379 -198059968 - MIR SINE MIR -9 253 23 1892 176 37 29 chr4 4268904 4269122 -198059225 - MLT1B LTR MaLR -11 379 155 2019 130 7 0 chr4 4269122 4269421 -198058926 + AluSq SINE Alu 1 301 -12 1892 176 37 29 chr4 4269421 4269578 -198058769 - MLT1B LTR MaLR -235 155 1 510 313 72 15 chr4 4269697 4269962 -198058385 - MARNA DNA Mariner -230 356 77 230 271 0 0 chr4 4269973 4270021 -198058326 + MIR SINE MIR 86 133 -75 760 176 0 61 chr4 4270026 4270191 -198058156 + L1MA9 LINE L1 5814 5968 -344 872 163 17 22 chr4 4270191 4270369 -198057978 + FRAM SINE Alu 1 176 0 1393 190 57 10 chr4 4270375 4270675 -198057672 + L1MA9 LINE L1 5959 6272 -40 545 217 34 63 chr4 4270958 4271133 -198057214 + L1MB8 LINE L1 6004 6173 -5 1878 218 35 2 chr4 4271665 4272097 -198056250 + L1MB3 LINE L1 4829 5274 -872 1329 166 16 4 chr4 4272096 4272343 -198056004 - L1MB3 LINE L1 -235 5948 5699 * 4521 157 37 37 chr4 4272344 4272381 -198055966 + L1MB3 LINE L1 5263 5299 -884 1896 132 3 3 chr4 4272381 4272670 -198055677 + AluSq SINE Alu 1 289 -24 4521 157 37 37 chr4 4272670 4273551 -198054796 + L1MB3 LINE L1 5298 6181 -2 546 120 0 0 chr4 4273575 4273650 -198054697 + AluJ/FLAM SINE Alu 3 77 -235 22 56 0 0 chr4 4273673 4273709 -198054638 + AT_rich Low_complexity Low_complexity 1 36 0 248 304 76 0 chr4 4273742 4273821 -198054526 + L2 LINE L2 3168 3252 -20 1973 108 11 3 chr4 4273953 4274240 -198054107 + AluSp SINE Alu 1 289 -24 392 182 3 85 chr4 4274245 4274366 -198053981 + L1MD3 LINE L1 7660 7789 -206 1917 141 0 16 chr4 4274366 4274672 -198053675 - AluSx SINE Alu -11 301 1 392 182 3 85 chr4 4274672 4274691 -198053656 + L1MD3 LINE L1 7789 7995 0 1014 199 16 0 chr4 4275444 4275630 -198052717 - MER5A DNA MER1_type 0 189 1 230 328 0 0 chr4 4275758 4275819 -198052528 - L2 LINE L2 -2 3311 3251 326 292 76 7 chr4 4275901 4276045 -198052302 + HAL1b LINE L1 397 550 -798 723 240 35 58 chr4 4276072 4276330 -198052017 - L2 LINE L2 -4 3309 3058 2122 115 0 0 chr4 4276683 4276979 -198051368 + AluSx SINE Alu 1 296 -16 2022 122 3 3 chr4 4277219 4277515 -198050832 + AluSq SINE Alu 1 296 -17 611 271 101 95 chr4 4277561 4277994 -198050353 + L1MEc LINE L1 2105 2489 -3726 2232 52 21 7 chr4 4277994 4278283 -198050064 + AluY SINE Alu 2 294 -17 611 271 101 95 chr4 4278283 4278327 -198050020 + L1MEc LINE L1 2489 2531 -3684 243 170 0 0 chr4 4278345 4278392 -198049955 + (TA)n Simple_repeat Simple_repeat 1 47 0 226 292 0 0 chr4 4278393 4278482 -198049865 - L1MC4 LINE L1 -1340 6702 6614 302 341 0 0 chr4 4278482 4278564 -198049783 + L1MC4 LINE L1 6622 6703 -1339 * 382 272 0 22 chr4 4278516 4278608 -198049739 - L1MC4 LINE L1 -1339 6703 6614 * 394 300 0 0 chr4 4278576 4278666 -198049681 + L1MC4 LINE L1 6614 6703 -1339 837 121 0 0 chr4 4278667 4278791 -198049556 - AluSp/q SINE Alu -14 299 176 346 327 119 0 chr4 4278837 4279005 -198049342 + L1MEc LINE L1 2627 2814 -3401 795 226 40 32 chr4 4279007 4279239 -198049108 + MIR SINE MIR 23 261 -1 382 340 47 0 chr4 4279417 4279567 -198048780 - L3 LINE CR1 -15 1562 1406 938 116 0 0 chr4 4279580 4279785 -198048562 - AluSx SINE Alu 0 356 152 1062 159 0 53 chr4 4279788 4280014 -198048333 + AluJo SINE Alu 97 310 -2 259 286 132 22 chr4 4280204 4280295 -198048052 + L2 LINE L2 3164 3264 -49 1123 75 20 0 chr4 4280327 4280474 -198047873 - AluSx SINE Alu -162 150 1 210 118 0 0 chr4 4280569 4280603 -198047744 + (TCCA)n Simple_repeat Simple_repeat 1 34 0 470 304 120 0 chr4 4280614 4280805 -198047542 - L2 LINE L2 0 3313 3100 185 244 0 0 chr4 4281065 4281106 -198047241 - L3 LINE CR1 -582 995 955 214 310 86 52 chr4 4281117 4281291 -198047056 - L3 LINE CR1 -1133 444 265 199 239 0 22 chr4 4281531 4281577 -198046770 - MIR SINE MIR -63 145 101 332 278 18 71 chr4 4281741 4281910 -198046437 + L2 LINE L2 2305 2464 -850 360 64 0 0 chr4 4281945 4281992 -198046355 + (TGGA)n Simple_repeat Simple_repeat 4 50 0 282 56 0 0 chr4 4282109 4282145 -198046202 + (GGAGAA)n Simple_repeat Simple_repeat 5 40 0 1870 119 44 10 chr4 4282164 4282459 -198045888 + AluSx SINE Alu 1 305 -7 210 145 0 48 chr4 4282469 4282531 -198045816 + (GGGAGA)n Simple_repeat Simple_repeat 3 61 0 * 310 200 24 41 chr4 4282525 4282613 -198045734 + GA-rich Low_complexity Low_complexity 1 86 -81 2267 102 0 0 chr4 4282613 4282918 -198045429 + AluSg SINE Alu 1 305 -5 310 200 24 41 chr4 4282918 4282999 -198045348 + GA-rich Low_complexity Low_complexity 86 167 0 292 227 19 143 chr4 4283509 4283664 -198044683 - MIR SINE MIR -44 164 28 1518 190 13 3 chr4 4283825 4284125 -198044222 + AluJo SINE Alu 1 303 -9 220 240 29 29 chr4 4285806 4285910 -198042437 + (CCCG)n Simple_repeat Simple_repeat 2 105 0 562 204 68 34 chr4 4286726 4286873 -198041474 + MER45A DNA AcHobo 27 178 0 300 257 83 76 chr4 4286962 4287106 -198041241 - L2 LINE L2 0 3313 3169 198 0 0 0 chr4 4287298 4287320 -198041027 + (TTTC)n Simple_repeat Simple_repeat 2 23 0 1610 155 7 40 chr4 4287322 4287626 -198040721 - AluJo SINE Alu -18 294 1 506 240 154 0 chr4 4287761 4287936 -198040411 + MLT1J1 LTR MaLR 238 439 -7 1870 112 14 11 chr4 4288046 4288331 -198040016 - AluSg SINE Alu -24 286 1 1880 93 17 42 chr4 4288426 4288715 -198039632 + AluSx SINE Alu 21 302 -10 5418 50 19 0 chr4 4289063 4289738 -198038609 - L1PA5 LINE L1 0 6154 5467 1551 118 0 65 chr4 4289920 4290242 -198038105 - AluSg SINE Alu -9 301 1 1796 237 24 26 chr4 4290245 4290713 -198037634 - MLT1C LTR MaLR 0 467 1 2674 142 19 54 chr4 4290721 4290846 -198037501 + L1MA8 LINE L1 5719 5847 -444 1666 159 3 41 chr4 4290846 4290990 -198037357 + AluJb SINE Alu 1 149 -163 1976 78 103 4 chr4 4290990 4291271 -198037076 + AluSp SINE Alu 2 310 -3 1666 159 3 41 chr4 4291271 4291441 -198036906 + AluJb SINE Alu 149 303 -9 2674 142 19 54 chr4 4291441 4291836 -198036511 + L1MA8 LINE L1 5847 6221 -70 7558 111 54 11 chr4 4291841 4292997 -198035350 - HSMAR2 DNA Mariner -5 1297 93 309 262 123 41 chr4 4293510 4293632 -198034715 - MIR SINE MIR -7 255 124 760 129 313 0 chr4 4293637 4293784 -198034563 - MER46A DNA MER2_type 0 236 44 198 274 39 0 chr4 4293806 4293857 -198034490 - MIR SINE MIR -165 97 45 23 0 0 0 chr4 4294114 4294137 -198034210 + AT_rich Low_complexity Low_complexity 1 23 0 873 136 8 0 chr4 4294712 4294844 -198033503 + FLAM_A SINE Alu 1 133 0 212 331 58 52 chr4 4295035 4295207 -198033140 - L2 LINE L2 -3061 253 81 1131 183 0 24 chr4 4296008 4296221 -198032126 + AluJo SINE Alu 85 292 -20 1817 146 3 13 chr4 4297319 4297620 -198030727 + AluJb SINE Alu 1 298 -14 375 297 65 7 chr4 4297628 4297783 -198030564 + L1ME4a LINE L1 5956 6119 -2 357 282 35 7 chr4 4297872 4298014 -198030333 + L1MC4a LINE L1 5753 5898 -1910 892 253 80 118 chr4 4298019 4298655 -198029692 + L1ME3A LINE L1 5559 6170 0 2085 107 3 28 chr4 4299362 4299680 -198028667 + AluSp SINE Alu 1 310 -3 544 276 144 0 chr4 4300240 4300414 -198027933 + MIR SINE MIR 13 211 -51 2018 119 3 19 chr4 4300462 4300774 -198027573 - AluSx SINE Alu -5 307 1 380 201 166 14 chr4 4300881 4301020 -198027327 + MER106B DNA MER1_type 865 1024 -35 292 43 109 0 chr4 4301013 4301059 -198027288 - MER106A DNA MER1_type -13 223 173 * 2207 98 0 0 chr4 4301090 4301385 -198026962 - AluSq SINE Alu -18 295 1 226 271 224 28 chr4 4301431 4301538 -198026809 - MER5B DNA MER1_type 0 178 51 2362 45 0 10 chr4 4301657 4301948 -198026399 - AluY SINE Alu -23 288 1 193 294 0 0 chr4 4302326 4302377 -198025970 + MIR SINE MIR 59 109 -99 1847 131 13 23 chr4 4302760 4303065 -198025282 + AluJb SINE Alu 1 302 -10 516 126 0 0 chr4 4304244 4304331 -198024016 - L1MA9 LINE L1 0 6312 6226 1147 135 53 55 chr4 4304342 4304632 -198023715 - L1MA9 LINE L1 -15 6285 6007 191 175 79 79 chr4 4304636 4304699 -198023648 + L2 LINE L2 3202 3264 -8 2039 77 0 58 chr4 4305320 4305630 -198022717 - AluSg SINE Alu -18 292 1 286 236 89 102 chr4 4305672 4305829 -198022518 + MIR3 SINE MIR 36 190 -18 362 279 127 35 chr4 4306263 4306460 -198021887 - L1MC/D LINE L1 -2018 5790 5576 300 266 65 81 chr4 4307582 4307706 -198020641 - L2 LINE L2 -14 3258 3137 181 200 25 0 chr4 4307749 4307789 -198020558 - L2 LINE L2 -1 3271 3231 2033 106 23 0 chr4 4308078 4308381 -198019966 + AluSg SINE Alu 1 310 0 186 103 0 0 chr4 4308503 4308532 -198019815 + (T)n Simple_repeat Simple_repeat 1 29 0 2050 114 3 43 chr4 4308958 4309282 -198019065 + AluSq SINE Alu 1 311 -2 326 289 250 19 chr4 4309426 4309634 -198018713 + MIR SINE MIR 7 262 0 921 253 37 17 chr4 4310226 4310467 -198017880 + MIR SINE MIR 17 262 0 22 0 0 0 chr4 4310505 4310527 -198017820 + AT_rich Low_complexity Low_complexity 1 22 0 363 169 26 39 chr4 4310639 4310716 -198017631 + MIR SINE MIR 187 262 0 1403 80 0 50 chr4 4310887 4311088 -198017259 - AluSc SINE Alu -12 297 107 2625 36 0 0 chr4 4311089 4311398 -198016949 - AluY SINE Alu -2 309 1 312 240 69 98 chr4 4311398 4311602 -198016745 - L1MC/D LINE L1 -515 5606 5409 3098 77 47 12 chr4 4312041 4312433 -198015914 + MLT2A1 LTR ERVL 1 411 -33 441 95 0 0 chr4 4312433 4312496 -198015851 + (TA)n Simple_repeat Simple_repeat 1 63 0 3098 77 47 12 chr4 4312496 4312532 -198015815 + MLT2A1 LTR ERVL 411 444 0 779 161 0 0 chr4 4312575 4312693 -198015654 + FLAM_C SINE Alu 1 118 -15 198 103 0 0 chr4 4312696 4312725 -198015622 + (TAA)n Simple_repeat Simple_repeat 3 31 0 275 311 19 0 chr4 4312896 4313002 -198015345 + LTR16C LTR ERVL 17 124 -367 2155 168 73 36 chr4 4313840 4314281 -198014066 - LTR32 LTR ERVL 0 471 15 632 253 104 22 chr4 4314284 4314466 -198013881 + MIR SINE MIR 47 243 -19 380 264 11 0 chr4 4314679 4314766 -198013581 - MIR SINE MIR -60 202 115 2172 107 0 0 chr4 4315042 4315340 -198013007 + AluSx SINE Alu 1 298 -14 648 174 0 3 chr4 4315340 4315455 -198012892 - LTR18A LTR ERVL -6 351 248 703 291 61 5 chr4 4315608 4315804 -198012543 - LTR18A LTR ERVL -147 210 4 398 272 48 48 chr4 4315917 4316064 -198012283 - MER117 DNA MER1_type -49 148 2 3973 99 5 0 chr4 4316281 4316836 -198011511 + L1PA10 LINE L1 5611 6168 0 2116 113 7 0 chr4 4316924 4317234 -198011113 + AluSp SINE Alu 2 313 0 2231 100 7 0 chr4 4317427 4317737 -198010610 + AluSx SINE Alu 1 312 0 285 291 75 15 chr4 4318921 4319055 -198009292 + L1ME3A LINE L1 5524 5665 -497 225 0 0 0 chr4 4319139 4319164 -198009183 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 2097 100 0 0 chr4 4319164 4319444 -198008903 - AluSx SINE Alu -32 280 1 1648 152 0 55 chr4 4319444 4319754 -198008593 - AluJo SINE Alu -14 298 6 554 219 34 0 chr4 4319783 4319902 -198008445 + L1ME3A LINE L1 5850 5972 -198 245 189 344 0 chr4 4319909 4319999 -198008348 + L1ME3A LINE L1 6042 6162 -8 210 289 0 106 chr4 4320375 4320479 -198007868 - MIR SINE MIR -132 130 38 197 33 33 0 chr4 4320958 4320988 -198007359 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1534 133 47 36 chr4 4320990 4321268 -198007079 - AluJo SINE Alu -23 289 9 2373 74 0 3 chr4 4321336 4321648 -198006699 + AluY SINE Alu 1 311 0 2092 92 3 3 chr4 4322410 4322750 -198005597 - AluSp SINE Alu 0 340 1 2142 117 10 0 chr4 4323046 4323355 -198004992 - AluSx SINE Alu 0 312 1 2465 102 36 28 chr4 4324318 4324679 -198003668 + THE1B LTR MaLR 1 364 0 336 298 258 25 chr4 4324974 4325172 -198003175 - MIR SINE MIR -9 253 10 1875 124 34 0 chr4 4325894 4326185 -198002162 + AluSx SINE Alu 1 301 -11 21 0 0 0 chr4 4327248 4327269 -198001078 + AT_rich Low_complexity Low_complexity 1 21 0 2284 198 77 73 chr4 4327652 4328409 -197999938 + L1MD1 LINE L1 14 5423 -1117 732 190 28 0 chr4 4328423 4328565 -197999782 + L1MA9 LINE L1 6108 6253 -59 1414 178 69 4 chr4 4328565 4328841 -197999506 + AluJo SINE Alu 1 294 -18 180 0 0 0 chr4 4328897 4328917 -197999430 + (A)n Simple_repeat Simple_repeat 1 20 0 3777 191 51 72 chr4 4328937 4329510 -197998837 + L1MD1 LINE L1 5437 6020 -616 5536 101 25 6 chr4 4329510 4330313 -197998034 - L1MA2 LINE L1 0 6304 5487 3777 191 51 72 chr4 4330313 4330950 -197997397 + L1MD1 LINE L1 6020 6628 -8 1445 125 32 39 chr4 4330974 4331255 -197997092 - Tigger7 DNA MER2_type 0 2487 2209 557 163 0 0 chr4 4331263 4331349 -197996998 - Tigger7 DNA MER2_type -387 163 78 535 236 0 0 chr4 4332072 4332182 -197996165 - FRAM SINE Alu -67 109 1 2068 122 0 0 chr4 4332583 4332887 -197995460 + AluSx SINE Alu 1 304 -8 182 204 0 19 chr4 4333225 4333279 -197995068 + CT-rich Low_complexity Low_complexity 3 55 0 504 309 52 14 chr4 4333748 4333960 -197994387 + MIR SINE MIR 21 248 -14 906 188 14 29 chr4 4334078 4334286 -197994061 - AluJb SINE Alu -9 303 99 2140 110 0 0 chr4 4334350 4334640 -197993707 - AluSx SINE Alu -22 290 1 195 264 75 0 chr4 4334868 4334921 -197993426 + MIR SINE MIR 50 106 -156 1001 90 0 0 chr4 4335075 4335209 -197993138 + AluSp/q SINE Alu 171 304 -9 2079 114 0 3 chr4 4335220 4335517 -197992830 + AluSx SINE Alu 1 296 -16 2091 112 0 0 chr4 4335705 4335990 -197992357 - AluSx SINE Alu -24 288 4 180 332 127 9 chr4 4336189 4336418 -197991929 + L2 LINE L2 2999 3254 -59 235 200 52 13 chr4 4337255 4337370 -197990977 + L2 LINE L2 3101 3272 0 * 486 265 15 22 chr4 4337369 4337505 -197990842 - MIR SINE MIR -108 154 20 1877 137 3 29 chr4 4337689 4338002 -197990345 + AluSx SINE Alu 1 305 -7 2885 179 39 20 chr4 4338549 4339193 -197989154 + L1 LINE L1 4104 4759 -1387 2020 95 51 3 chr4 4339971 4340267 -197988080 - AluSg SINE Alu 0 310 1 2043 93 0 0 chr4 4341827 4342097 -197986250 - AluSg SINE Alu -40 270 1 1065 221 55 0 chr4 4342618 4342835 -197985512 - MIR SINE MIR -3 259 31 2326 63 3 16 chr4 4345295 4345610 -197982737 - AluY SINE Alu 0 311 1 299 267 110 20 chr4 4346195 4346341 -197982006 - MIR SINE MIR -60 202 44 195 297 144 8 chr4 4346742 4346860 -197981487 + MIR SINE MIR 79 212 -50 2223 111 0 0 chr4 4347136 4347443 -197980904 - AluSx SINE Alu -5 307 1 264 291 36 45 chr4 4347572 4347682 -197980665 + MIR3 SINE MIR 85 193 -15 306 244 39 0 chr4 4347806 4347884 -197980463 - MIR SINE MIR -70 192 112 249 197 14 113 chr4 4347948 4348019 -197980328 - L2 LINE L2 -20 3252 3189 653 253 96 35 chr4 4348117 4348346 -197980001 - MIR SINE MIR -8 254 12 454 143 220 0 chr4 4348438 4348529 -197979818 + MER81 DNA DNA 4 114 0 553 260 33 20 chr4 4349464 4349614 -197978733 + MIR SINE MIR 108 259 -3 302 211 14 56 chr4 4349612 4349683 -197978664 + L2 LINE L2 3246 3313 0 * 1877 140 31 63 chr4 4349800 4350151 -197978196 - MLT1B LTR MaLR 0 390 51 208 290 122 19 chr4 4350377 4350484 -197977863 + L2 LINE L2 2965 3082 -190 882 97 0 62 chr4 4350505 4350649 -197977698 + AluSc SINE Alu 1 135 -174 1962 122 0 26 chr4 4350650 4350953 -197977394 + AluSx SINE Alu 4 298 -14 354 282 154 26 chr4 4350979 4351096 -197977251 + L2 LINE L2 3139 3270 -2 359 155 19 126 chr4 4351668 4351771 -197976576 - MIR3 SINE MIR -5 203 112 443 289 10 0 chr4 4351773 4351877 -197976470 - L2 LINE L2 -2 3270 3166 294 172 11 151 chr4 4352087 4352180 -197976167 + MIR SINE MIR 11 90 -172 929 241 49 0 chr4 4352194 4352397 -197975950 - MLT1H1 LTR MaLR 0 555 343 539 292 82 18 chr4 4352438 4352657 -197975690 - MLT1H1 LTR MaLR -316 239 7 581 177 161 0 chr4 4352665 4352789 -197975558 + MIR SINE MIR 118 261 -1 1956 123 7 0 chr4 4353027 4353311 -197975036 - AluSx SINE Alu -26 286 1 465 19 0 0 chr4 4353529 4353583 -197974764 + (TG)n Simple_repeat Simple_repeat 2 55 0 520 304 117 26 chr4 4353607 4353784 -197974563 + MIR SINE MIR 6 210 -52 1748 146 80 50 chr4 4353784 4354148 -197974199 - THE1C LTR MaLR 0 375 1 520 304 117 26 chr4 4354148 4354200 -197974147 + MIR SINE MIR 210 256 -6 2306 126 27 36 chr4 4354965 4355330 -197973017 + THE1B LTR MaLR 3 364 0 2150 113 3 0 chr4 4355724 4356035 -197972312 - AluSx SINE Alu 0 312 1 1570 188 41 3 chr4 4356168 4356460 -197971887 + AluJo SINE Alu 1 303 -9 342 250 86 17 chr4 4356595 4356711 -197971636 + MER5A DNA MER1_type 38 161 -28 396 255 301 0 chr4 4356720 4356873 -197971474 - MIR SINE MIR -15 247 49 1816 149 3 14 chr4 4357095 4357384 -197970963 - AluJb SINE Alu -21 291 6 375 220 120 10 chr4 4357566 4357666 -197970681 + L2 LINE L2 3171 3281 -32 438 247 320 1 chr4 4357712 4357952 -197970395 + L2 LINE L2 2745 3045 -268 22 0 0 0 chr4 4358166 4358188 -197970159 + AT_rich Low_complexity Low_complexity 1 22 0 690 190 71 11 chr4 4358248 4358409 -197969938 - MER3 DNA MER1_type -65 144 5 378 0 0 0 chr4 4358437 4358479 -197969868 + (TG)n Simple_repeat Simple_repeat 1 42 0 25 0 0 0 chr4 4359262 4359287 -197969060 + AT_rich Low_complexity Low_complexity 1 25 0 922 140 0 0 chr4 4359323 4359466 -197968881 + FRAM SINE Alu 22 164 -12 249 140 0 0 chr4 4362395 4362452 -197965895 + (TC)n Simple_repeat Simple_repeat 2 58 0 2120 99 27 0 chr4 4362896 4363189 -197965158 - AluSx SINE Alu -11 301 1 732 241 141 0 chr4 4363338 4363529 -197964818 + Charlie1 DNA MER1_type 2 219 -2542 732 190 36 0 chr4 4363523 4363660 -197964687 + Charlie1 DNA MER1_type 2620 2761 0 42 20 0 0 chr4 4363815 4363864 -197964483 + AT_rich Low_complexity Low_complexity 1 49 0 213 290 43 0 chr4 4365343 4365412 -197962935 - L2 LINE L2 0 3272 3201 883 226 49 25 chr4 4366032 4366275 -197962072 + MIR SINE MIR 2 250 -12 309 248 34 39 chr4 4366427 4366530 -197961817 + MIR SINE MIR 87 191 -62 417 206 46 122 chr4 4366685 4366753 -197961594 - MER5B DNA MER1_type -55 123 51 207 0 0 0 chr4 4366753 4366776 -197961571 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2006 104 0 4 chr4 4366778 4367057 -197961290 - AluSg SINE Alu -32 278 1 417 206 46 122 chr4 4367057 4367116 -197961231 - MER5B DNA MER1_type -128 50 3 197 311 22 11 chr4 4368188 4368278 -197960069 + L3 LINE CR1 1268 1358 -219 503 308 92 25 chr4 4368938 4369178 -197959169 + MIR SINE MIR 7 262 0 2347 65 0 32 chr4 4369192 4369502 -197958845 - AluY SINE Alu -11 300 1 245 167 0 0 chr4 4372479 4372521 -197955826 + MER94 DNA DNA 70 111 -23 255 330 126 10 chr4 4372572 4372675 -197955672 - L2 LINE L2 -2 3270 3156 2040 129 0 3 chr4 4373053 4373362 -197954985 - AluSx SINE Alu -4 308 1 385 304 50 12 chr4 4373491 4373652 -197954695 + MIR SINE MIR 90 256 -6 289 363 40 0 chr4 4374810 4374934 -197953413 - L2 LINE L2 -3 3269 3141 769 143 75 8 chr4 4375589 4375722 -197952625 + AluSg/x SINE Alu 144 285 -27 1394 180 54 14 chr4 4376012 4376306 -197952041 - L1MB7 LINE L1 -9 6175 5870 309 194 16 0 chr4 4376311 4376373 -197951974 - L1MB7 LINE L1 -473 5705 5643 2091 107 30 3 chr4 4377024 4377324 -197951023 + AluSx SINE Alu 1 308 -4 1811 152 16 10 chr4 4377573 4377883 -197950464 - AluJo SINE Alu 0 312 1 1563 147 15 4 chr4 4378229 4378488 -197949859 + AluSx SINE Alu 1 262 -50 1571 117 0 25 chr4 4378494 4378733 -197949614 + AluSq SINE Alu 29 261 -52 842 168 173 11 chr4 4379130 4379309 -197949038 + AluJo SINE Alu 85 292 -20 195 293 103 60 chr4 4380602 4380718 -197947629 + MIR SINE MIR 31 151 -111 683 279 202 70 chr4 4381575 4381657 -197946690 + L2 LINE L2 1334 1404 -1910 1998 116 36 0 chr4 4381657 4381958 -197946389 + AluSx SINE Alu 1 312 0 683 279 202 70 chr4 4381958 4382164 -197946183 + L2 LINE L2 1404 1581 -1733 936 118 0 22 chr4 4382164 4382300 -197946047 - FLAM_C SINE Alu 0 133 1 683 279 202 70 chr4 4382300 4382795 -197945552 + L2 LINE L2 1581 2009 -1305 3304 136 84 4 chr4 4382795 4383332 -197945015 + LTR19B LTR ERV1 1 580 0 683 279 202 70 chr4 4383332 4383551 -197944796 + L2 LINE L2 2009 2471 -843 1920 130 24 0 chr4 4383723 4384016 -197944331 + AluSg SINE Alu 1 300 -10 246 337 74 0 chr4 4384282 4384377 -197943970 + MIR SINE MIR 38 139 -69 186 259 0 56 chr4 4384528 4384582 -197943765 - MIR3 SINE MIR -7 201 151 301 289 141 15 chr4 4384600 4384735 -197943612 - MER5A DNA MER1_type -29 160 9 189 226 226 0 chr4 4384743 4384796 -197943551 - MIR3 SINE MIR -48 160 96 461 287 71 10 chr4 4384804 4385004 -197943343 - MIR SINE MIR 0 262 48 1523 168 10 24 chr4 4385178 4385469 -197942878 - AluJb SINE Alu -25 287 1 859 133 0 0 chr4 4385479 4385607 -197942740 - FLAM_C SINE Alu -15 128 1 216 0 0 0 chr4 4385834 4385858 -197942489 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1956 53 3 86 chr4 4385861 4386164 -197942183 - AluY SINE Alu -32 279 2 830 174 25 0 chr4 4386808 4386969 -197941378 + L1MB7 LINE L1 5910 6074 -110 1029 214 68 80 chr4 4386969 4387306 -197941041 + MLT1B LTR MaLR 1 359 -108 1431 191 37 0 chr4 4387306 4387578 -197940769 - AluJo SINE Alu -30 282 1 1029 214 68 80 chr4 4387578 4387683 -197940664 + MLT1B LTR MaLR 359 464 -3 677 153 0 0 chr4 4387683 4387794 -197940553 + L1MB4 LINE L1 6067 6177 -3 210 186 0 47 chr4 4387809 4387852 -197940495 + MIR SINE MIR 154 194 -68 1233 116 0 0 chr4 4388033 4388206 -197940141 - AluSg/x SINE Alu -7 305 133 319 248 152 16 chr4 4388357 4388482 -197939865 + MIR SINE MIR 85 226 -36 282 363 18 9 chr4 4388531 4388644 -197939703 + L2 LINE L2 3197 3310 -3 2357 176 19 26 chr4 4388740 4389141 -197939206 + MLT1C LTR MaLR 1 400 -67 2326 75 0 0 chr4 4389141 4389435 -197938912 - AluY SINE Alu -17 294 1 2357 176 19 26 chr4 4389435 4389500 -197938847 + MLT1C LTR MaLR 400 464 -3 804 203 49 93 chr4 4390486 4390732 -197937615 + MLT1B LTR MaLR 1 235 -155 * 1310 194 113 76 chr4 4390731 4390907 -197937440 + MLT1C LTR MaLR 18 186 -281 1485 181 41 0 chr4 4390907 4391178 -197937169 - AluJo SINE Alu -28 284 3 1310 194 113 76 chr4 4391178 4391435 -197936912 + MLT1C LTR MaLR 186 467 0 1852 139 31 0 chr4 4391723 4392011 -197936336 + AluSq SINE Alu 1 297 -16 225 281 31 0 chr4 4392319 4392383 -197935964 + MIR SINE MIR 65 130 -78 1769 126 7 25 chr4 4392417 4392703 -197935644 + AluJb SINE Alu 7 287 -25 765 221 0 54 chr4 4393235 4393421 -197934926 + L1M3 LINE L1 5429 5596 -575 7168 102 18 11 chr4 4393426 4394426 -197933921 - LTR13 LTR ERVK 0 1007 1 2196 119 0 0 chr4 4394451 4394762 -197933585 + AluSx SINE Alu 1 311 -1 1383 93 31 0 chr4 4394800 4394994 -197933353 + AluSq SINE Alu 1 200 -113 25 51 0 0 chr4 4395001 4395040 -197933307 + AT_rich Low_complexity Low_complexity 1 39 0 1403 145 0 0 chr4 4395076 4395290 -197933057 - AluSg/x SINE Alu -16 296 83 451 226 0 0 chr4 4395495 4395579 -197932768 - PABL_B-int LTR ERV1 -449 6673 6590 1948 179 21 6 chr4 4395582 4395912 -197932435 + LTR32 LTR ERVL 14 348 -123 2128 112 3 0 chr4 4395915 4396211 -197932136 - AluSp SINE Alu -16 297 1 810 172 26 13 chr4 4396234 4396385 -197931962 + LTR32 LTR ERVL 319 471 0 690 335 37 41 chr4 4396451 4396964 -197931383 - PABL_B-int LTR ERV1 -598 6524 6014 2253 101 0 0 chr4 4397037 4397345 -197931002 + AluSg SINE Alu 1 308 -2 557 215 178 0 chr4 4397345 4397592 -197930755 + LTR23-int LTR ERV1 2089 2379 -2744 2656 202 88 102 chr4 4397612 4397648 -197930699 + LTR23-int LTR ERV1 3421 3456 -2490 2107 107 0 7 chr4 4397648 4397947 -197930400 + AluSx SINE Alu 1 297 -15 2656 202 88 102 chr4 4397947 4398915 -197929432 + LTR23-int LTR ERV1 3456 4410 -1536 1389 273 37 24 chr4 4399026 4399241 -197929106 + MLT1D LTR MaLR 35 246 -259 2253 116 0 0 chr4 4399241 4399551 -197928796 + AluSx SINE Alu 1 310 -2 1389 273 37 24 chr4 4399551 4399800 -197928547 + MLT1D LTR MaLR 246 505 0 655 295 127 45 chr4 4399800 4400262 -197928085 - MLT1J LTR MaLR -7 504 5 2012 130 0 13 chr4 4400503 4400859 -197927488 - AluSx SINE Alu 0 352 1 1614 127 15 8 chr4 4401229 4401488 -197926859 - MER2 DNA MER2_type -63 282 22 1037 291 158 38 chr4 4401490 4402638 -197925709 + L2 LINE L2 2006 3308 -5 225 250 19 0 chr4 4402638 4402690 -197925657 + GA-rich Low_complexity Low_complexity 1 53 0 1542 246 99 43 chr4 4402742 4403255 -197925092 + MLT1H1 LTR MaLR 14 555 0 281 265 20 20 chr4 4403256 4403358 -197924989 + L2 LINE L2 2291 2392 -922 1441 196 68 0 chr4 4403474 4403795 -197924552 + L1MB3 LINE L1 5839 6181 -2 21 26 0 26 chr4 4404625 4404642 -197923705 + AT_rich Low_complexity Low_complexity 1 17 -21 2111 122 0 3 chr4 4404642 4404929 -197923418 + AluSx SINE Alu 1 286 -26 21 26 0 26 chr4 4404929 4404950 -197923397 + AT_rich Low_complexity Low_complexity 17 38 0 237 284 95 14 chr4 4405087 4405161 -197923186 + L2 LINE L2 3188 3267 -5 326 302 93 61 chr4 4405652 4406079 -197922268 + L2 LINE L2 2553 3008 -264 241 105 0 0 chr4 4406167 4406205 -197922142 + MLT1J2 LTR MaLR 72 109 -341 412 331 49 23 chr4 4406225 4406491 -197921856 + MLT1J LTR MaLR 237 509 -2 324 298 65 24 chr4 4406610 4406734 -197921613 + L2 LINE L2 3136 3264 -8 2274 154 16 34 chr4 4406815 4406878 -197921469 + L1PA16 LINE L1 5724 5787 -379 1936 134 10 58 chr4 4406878 4407006 -197921341 + AluJo SINE Alu 6 139 -173 2226 108 0 17 chr4 4407006 4407301 -197921046 + AluSq SINE Alu 1 290 -23 1936 134 10 58 chr4 4407301 4407485 -197920862 + AluJo SINE Alu 139 303 -9 2274 154 16 34 chr4 4407485 4407869 -197920478 + L1PA16 LINE L1 5787 6163 -3 191 88 29 0 chr4 4409107 4409141 -197919206 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 464 283 7 0 chr4 4409160 4409305 -197919042 + L1ME4a LINE L1 5965 6110 -11 2264 122 3 0 chr4 4409645 4409956 -197918391 + AluSx SINE Alu 1 312 0 2180 126 27 36 chr4 4410350 4410715 -197917632 - THE1B LTR MaLR 0 364 3 218 318 148 34 chr4 4411481 4411533 -197916814 - MIR SINE MIR -6 256 211 1591 154 80 50 chr4 4411533 4411897 -197916450 + THE1C LTR MaLR 1 375 0 218 318 148 34 chr4 4411897 4412020 -197916327 - MIR SINE MIR -51 211 61 2345 101 55 71 chr4 4412572 4412629 -197915718 + MSTC LTR MaLR 1 57 -371 832 139 16 0 chr4 4412629 4412758 -197915589 + FLAM_C SINE Alu 3 133 0 2345 101 55 71 chr4 4412758 4413135 -197915212 + MSTC LTR MaLR 57 428 0 871 196 15 35 chr4 4413431 4413630 -197914717 + MLT1D LTR MaLR 41 235 -270 208 250 18 18 chr4 4413679 4413735 -197914612 - L2 LINE L2 -97 3216 3161 236 130 22 0 chr4 4414064 4414110 -197914237 + (TTCA)n Simple_repeat Simple_repeat 1 47 0 2092 116 0 75 chr4 4414292 4414627 -197913720 - AluSx SINE Alu -2 310 1 2347 113 0 10 chr4 4414732 4415042 -197913305 - AluSx SINE Alu -5 307 1 688 138 9 0 chr4 4415055 4415164 -197913183 - AluJb SINE Alu -12 300 191 225 336 34 48 chr4 4415304 4415451 -197912896 - MER5A DNA MER1_type -28 161 6 269 301 32 0 chr4 4415500 4415593 -197912754 - MER5A DNA MER1_type -84 105 10 1974 121 69 0 chr4 4415655 4415945 -197912402 - AluSg SINE Alu 0 310 1 263 167 0 0 chr4 4415961 4416003 -197912344 - 5S rRNA rRNA -79 42 1 373 213 56 9 chr4 4416082 4416190 -197912157 - MIR SINE MIR -107 155 43 1911 67 14 25 chr4 4416302 4416585 -197911762 - L1PA7 LINE L1 -1 6153 5874 516 275 24 35 chr4 4416586 4416784 -197911563 - MIR SINE MIR -62 146 2 900 238 67 18 chr4 4416818 4417100 -197911247 - MLT1C LTR MaLR 0 467 172 841 152 22 0 chr4 4417149 4417287 -197911060 - AluJo SINE Alu -171 141 1 2308 99 3 0 chr4 4417299 4417591 -197910756 - AluSx SINE Alu -19 293 1 1090 99 0 0 chr4 4417633 4417795 -197910552 + L1PB2 LINE L1 5990 6151 0 482 287 78 62 chr4 4417988 4418246 -197910101 + L1ME LINE L1 5514 5775 -346 996 179 25 0 chr4 4418449 4418645 -197909702 + LTR48B LTR ERV1 1 201 -443 1703 124 24 3 chr4 4418646 4418937 -197909410 - LTR23 LTR ERV1 0 437 141 2149 115 0 0 chr4 4418940 4419219 -197909128 - AluSg SINE Alu -1 309 31 5380 61 103 0 chr4 4419219 4419968 -197908379 - LTR12 LTR ERV1 0 826 1 249 88 0 0 chr4 4419968 4420002 -197908345 - AluSg SINE Alu -269 34 1 569 184 82 54 chr4 4420005 4420152 -197908195 - LTR23 LTR ERV1 -286 151 1 495 216 9 26 chr4 4420273 4420389 -197907958 - LTR23-int LTR ERV1 -223 4900 4787 5128 147 28 14 chr4 4420403 4421417 -197906930 - LTR49-int LTR ERV1 -478 6120 4608 2608 41 0 0 chr4 4421423 4421716 -197906631 + AluY SINE Alu 1 293 -18 1421 113 5 0 chr4 4421817 4422003 -197906344 - AluSg SINE Alu -123 187 1 832 209 83 7 chr4 4422004 4422462 -197905885 + L1MA9 LINE L1 5661 6183 0 2161 209 36 53 chr4 4422485 4422501 -197905846 - MER92B LTR ERV1 -4 632 617 2443 82 7 0 chr4 4422501 4422795 -197905552 + AluSq SINE Alu 1 296 -17 2161 209 36 53 chr4 4422795 4423420 -197904927 - MER92B LTR ERV1 -19 617 2 202 270 11 34 chr4 4423533 4423622 -197904725 - L2 LINE L2 -188 3084 2998 323 183 11 75 chr4 4423727 4423820 -197904527 - LTR33A LTR ERVL -11 512 426 308 237 67 30 chr4 4425073 4425208 -197903139 - MER65B LTR ERV1 -391 140 1 267 236 28 0 chr4 4425286 4425358 -197902989 + MIR SINE MIR 111 184 -78 229 237 75 32 chr4 4425485 4425578 -197902769 + L2 LINE L2 3136 3232 -40 2370 99 0 7 chr4 4425862 4426166 -197902181 + AluSx SINE Alu 1 302 -10 450 143 48 0 chr4 4426360 4426444 -197901903 - AluS SINE Alu 0 309 222 820 255 50 50 chr4 4476931 4477521 -197850826 + L1ME LINE L1 678 1257 -4823 1058 235 65 0 chr4 4477631 4477891 -197850456 - MLT1-int LTR MaLR -139 1232 956 2194 221 4 6 chr4 4478289 4478764 -197849583 - MLT1-int LTR MaLR -1075 660 187 309 309 43 25 chr4 4479068 4479230 -197849117 - L1M4 LINE L1 -5336 1206 1042 633 216 14 7 chr4 4479693 4479832 -197848515 + MLT1A1 LTR MaLR 225 364 -1 577 142 53 18 chr4 4479834 4479947 -197848400 + MLT1A1-int LTR MaLR 2 118 -1617 2164 134 0 15 chr4 4480225 4480567 -197847780 - MER1B DNA MER1_type 0 337 1 446 233 200 30 chr4 4480645 4480945 -197847402 - L1MEc LINE L1 -4418 1978 1628 989 106 0 73 chr4 4480957 4481136 -197847211 + MLT2A2 LTR ERVL 1 166 -287 890 122 0 0 chr4 4481137 4481252 -197847095 - AluSq/x SINE Alu -197 115 1 259 241 13 25 chr4 4481254 4481333 -197847014 + LTR52 LTR ERVL 16 93 -328 * 648 175 0 17 chr4 4481329 4481449 -197846898 - MLT1A1 LTR MaLR -247 118 1 6724 75 26 5 chr4 4482299 4483260 -197845087 - L1PA11 LINE L1 -1 6173 5209 21 71 0 0 chr4 4483359 4483401 -197844946 + AT_rich Low_complexity Low_complexity 1 42 0 612 270 10 99 chr4 4483413 4483706 -197844641 - L2 LINE L2 -161 3152 2886 407 296 0 74 chr4 4483710 4483872 -197844475 - L2 LINE L2 -985 2329 2180 3607 53 2 0 chr4 4484235 4484708 -197843639 + L1PA8 LINE L1 5467 5940 -232 1673 166 54 11 chr4 4485213 4485491 -197842856 - AluJb SINE Alu -22 290 1 284 276 38 0 chr4 4485494 4485599 -197842748 + L1M4 LINE L1 2749 2857 -3289 1184 306 15 11 chr4 4485608 4486076 -197842271 + L1ME3A LINE L1 5696 6165 -5 905 248 35 13 chr4 4486105 4486335 -197842012 + MIR SINE MIR 10 244 -18 2830 201 55 16 chr4 4486413 4487090 -197841257 + L1MD2 LINE L1 5630 6332 -27 404 306 121 25 chr4 4487091 4487290 -197841057 + MIR SINE MIR 34 251 -11 333 0 0 0 chr4 4487461 4487498 -197840849 + (TG)n Simple_repeat Simple_repeat 2 38 0 181 49 0 73 chr4 4487889 4487930 -197840417 + (TTTTTG)n Simple_repeat Simple_repeat 6 43 0 229 265 61 31 chr4 4488004 4488102 -197840245 + MER5A DNA MER1_type 4 104 -85 390 290 28 7 chr4 4488146 4488291 -197840056 - MIR3 SINE MIR -48 160 13 262 50 0 25 chr4 4488532 4488572 -197839775 + MIR SINE MIR 102 140 -122 399 250 31 55 chr4 4488860 4488988 -197839359 - MIR3 SINE MIR -15 193 69 378 147 29 0 chr4 4488991 4489059 -197839288 + MLT1A2 LTR MaLR 1 70 -304 1708 80 0 24 chr4 4489159 4489408 -197838939 + L1PA8 LINE L1 5930 6172 0 438 20 0 0 chr4 4489931 4489982 -197838365 + (TG)n Simple_repeat Simple_repeat 1 51 0 1001 143 62 85 chr4 4490094 4490318 -197838029 - MER20 DNA MER1_type 0 219 1 280 350 39 56 chr4 4492764 4492944 -197835403 - L2 LINE L2 -2 3270 3094 25 31 0 0 chr4 4493379 4493411 -197834936 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr4 4494919 4494947 -197833400 + AT_rich Low_complexity Low_complexity 1 28 0 2428 82 7 0 chr4 4495983 4496288 -197832059 - AluSg SINE Alu -3 307 1 22 0 0 0 chr4 4500857 4500879 -197827468 + AT_rich Low_complexity Low_complexity 1 22 0 464 188 354 11 chr4 4501191 4501372 -197826975 - MIR SINE MIR -10 252 10 515 295 181 54 chr4 4501452 4502049 -197826298 + L2 LINE L2 2077 2749 -565 355 391 31 65 chr4 4502067 4502389 -197825958 + L2 LINE L2 2962 3272 0 648 321 66 45 chr4 4502511 4503028 -197825319 + MLT1K LTR MaLR 40 567 -21 225 0 0 0 chr4 4503164 4503189 -197825158 + (GAAAA)n Simple_repeat Simple_repeat 4 28 0 555 260 103 18 chr4 4503365 4503588 -197824759 + L3b LINE CR1 1161 1402 -181 328 296 51 0 chr4 4503711 4503809 -197824538 - L2 LINE L2 -1 3271 3169 771 179 8 22 chr4 4504899 4505033 -197823314 + FLAM_A SINE Alu 1 132 -1 423 187 0 0 chr4 4505985 4506092 -197822255 + (TA)n Simple_repeat Simple_repeat 1 107 0 458 227 9 9 chr4 4506367 4506477 -197821870 - LTR33 LTR ERVL -343 178 69 2200 137 38 11 chr4 4506477 4506850 -197821497 + MSTB LTR MaLR 44 426 0 462 259 83 19 chr4 4506886 4507091 -197821256 + LTR16A LTR ERVL 59 276 -174 2196 89 31 0 chr4 4507292 4507585 -197820762 + AluY SINE Alu 1 302 -9 235 244 110 37 chr4 4507972 4508054 -197820293 + MIR SINE MIR 175 262 0 412 226 124 0 chr4 4508358 4508495 -197819852 - L1ME4a LINE L1 0 6121 5968 31 0 0 0 chr4 4508586 4508617 -197819730 + AT_rich Low_complexity Low_complexity 1 31 0 1608 180 0 4 chr4 4508861 4509117 -197819230 - AluSx SINE Alu -57 255 1 334 272 123 31 chr4 4509167 4509329 -197819018 - L1 LINE L1 -1088 5058 4882 216 0 0 0 chr4 4509363 4509387 -197818960 + (CA)n Simple_repeat Simple_repeat 2 25 0 322 334 127 23 chr4 4509431 4509730 -197818617 - L1 LINE L1 -1517 4629 4300 324 338 44 19 chr4 4510144 4510304 -197818043 + L1MC4a LINE L1 5708 5871 -1937 181 73 24 24 chr4 4510654 4510695 -197817652 + (CAAAAA)n Simple_repeat Simple_repeat 3 43 0 494 270 0 0 chr4 4510819 4510934 -197817413 - MIR3 SINE MIR -28 180 66 189 329 14 0 chr4 4511667 4511737 -197816610 + MIR SINE MIR 180 250 -12 917 216 72 0 chr4 4512936 4513144 -197815203 - MER58A DNA MER1_type -1 223 1 205 191 143 0 chr4 4513449 4513491 -197814856 + L2 LINE L2 3219 3266 -6 203 203 0 109 chr4 4514387 4514451 -197813896 - MIR3 SINE MIR 0 208 152 1140 250 192 5 chr4 4514482 4514940 -197813407 - L2 LINE L2 0 3313 2770 185 254 164 15 chr4 4516123 4516190 -197812157 - L3 LINE CR1 -132 1445 1369 581 311 77 56 chr4 4516197 4516275 -197812072 - L3 LINE CR1 -322 1255 1180 2360 73 0 13 chr4 4516275 4516575 -197811772 - AluSc SINE Alu -13 296 1 581 311 77 56 chr4 4516575 4516872 -197811475 - L3 LINE CR1 -397 1180 872 260 309 147 29 chr4 4517069 4517273 -197811074 - L3 LINE CR1 -1089 488 261 490 326 70 11 chr4 4517518 4517705 -197810642 + MIR SINE MIR 47 244 -18 600 264 106 22 chr4 4518885 4519112 -197809235 - MIR SINE MIR 0 262 17 418 259 280 16 chr4 4519775 4519968 -197808379 - MIR SINE MIR -1 261 18 197 250 21 0 chr4 4520267 4520315 -197808032 + L2 LINE L2 3186 3234 -38 972 104 0 15 chr4 4521804 4521962 -197806385 - FLAM_C SINE Alu 0 156 1 313 300 70 0 chr4 4526662 4526762 -197801585 + MIR3 SINE MIR 78 184 -24 261 284 74 0 chr4 4526916 4526997 -197801350 - MIR SINE MIR -71 191 105 293 191 0 0 chr4 4527394 4527441 -197800906 - MER5B DNA MER1_type -131 47 1 789 227 104 5 chr4 4527459 4527679 -197800668 + MIR SINE MIR 13 254 -8 1232 179 25 68 chr4 4527791 4528070 -197800277 - AluJo SINE Alu -2 310 44 188 259 138 0 chr4 4528537 4528595 -197799752 - MIR3 SINE MIR -52 156 91 703 264 24 81 chr4 4529903 4530149 -197798198 - MIR SINE MIR -29 233 2 345 298 12 0 chr4 4530855 4530939 -197797408 + L2 LINE L2 3229 3313 0 211 353 35 0 chr4 4531251 4531336 -197797011 + L3b LINE CR1 1422 1509 -74 1646 175 42 18 chr4 4532681 4533012 -197795335 - MER2 DNA MER2_type -3 341 3 550 240 56 56 chr4 4533028 4533166 -197795181 - L1ME4a LINE L1 -198 5923 5783 2154 116 0 7 chr4 4533166 4533476 -197794871 + AluSq SINE Alu 1 308 -5 550 240 56 56 chr4 4533476 4533570 -197794777 - L1ME4a LINE L1 -337 5784 5691 420 221 0 12 chr4 4533925 4534011 -197794336 + MIR3 SINE MIR 117 201 -7 180 258 0 65 chr4 4535023 4535085 -197793262 - L2 LINE L2 -60 3212 3155 361 300 61 40 chr4 4535085 4535362 -197792985 + Charlie2 DNA MER1_type 1 283 -2499 2713 224 76 35 chr4 4535390 4535986 -197792361 + Charlie2 DNA MER1_type 1852 2505 -357 563 95 21 0 chr4 4535986 4536081 -197792266 + L1PB2 LINE L1 6053 6149 -2 2713 224 76 35 chr4 4536081 4536455 -197791892 + Charlie2 DNA MER1_type 2505 2862 0 189 333 49 31 chr4 4536549 4536732 -197791615 - L2 LINE L2 -313 2959 2701 381 259 45 18 chr4 4536792 4536904 -197791443 - L2 LINE L2 0 3272 3158 1262 187 68 3 chr4 4536950 4537300 -197791047 + L1MD2 LINE L1 5211 5577 -751 1258 126 40 20 chr4 4537321 4537568 -197790779 - L1MB8 LINE L1 -5 6173 5922 2026 140 35 85 chr4 4537573 4537912 -197790435 - MER47B DNA MER2_type -1910 413 99 1950 124 16 29 chr4 4537912 4538219 -197790128 + AluSx SINE Alu 5 307 -5 2026 140 35 85 chr4 4538219 4538314 -197790033 - MER47B DNA MER2_type -2224 99 1 1249 137 39 13 chr4 4538314 4538548 -197789799 - L1MB8 LINE L1 -261 5923 5684 * 1432 234 63 0 chr4 4538546 4539013 -197789334 + L1MD2 LINE L1 5579 6080 -86 1357 105 79 31 chr4 4539042 4539359 -197788988 - Tigger7 DNA MER2_type -34 2553 1 437 198 143 0 chr4 4539575 4539666 -197788681 + Tigger5 DNA MER2_type 132 235 -2088 2446 64 0 0 chr4 4540110 4540408 -197787939 - AluY SINE Alu -13 298 1 828 124 25 8 chr4 4540409 4540530 -197787817 - AluJb SINE Alu -178 134 12 4008 138 46 32 chr4 4540541 4541052 -197787295 - L1MB3 LINE L1 -42 6141 5614 2053 146 36 33 chr4 4541052 4541415 -197786932 + THE1B LTR MaLR 1 364 0 4008 138 46 32 chr4 4541415 4541710 -197786637 - L1MB3 LINE L1 -569 5614 5324 1411 107 20 0 chr4 4541762 4541958 -197786389 - AluSq SINE Alu -113 200 1 583 242 152 51 chr4 4542397 4542806 -197785541 + MLT1J2 LTR MaLR 1 450 0 213 203 0 68 chr4 4542937 4542996 -197785351 - L2 LINE L2 -82 3190 3136 256 271 26 56 chr4 4543074 4543225 -197785122 + MIR SINE MIR 8 156 -67 2433 99 0 0 chr4 4543457 4543769 -197784578 - AluSx SINE Alu 0 312 1 263 325 73 14 chr4 4543799 4543941 -197784406 - MIR SINE MIR -62 146 1 1099 296 69 11 chr4 4544067 4544503 -197783844 + L2 LINE L2 2853 3313 0 2355 36 11 0 chr4 4544602 4544878 -197783469 + AluY SINE Alu 31 309 -2 2148 123 0 37 chr4 4545266 4545554 -197782793 + AluSq SINE Alu 1 277 -36 180 0 0 0 chr4 4545554 4545574 -197782773 + (TAA)n Simple_repeat Simple_repeat 2 21 0 2148 123 0 37 chr4 4545574 4545610 -197782737 + AluSq SINE Alu 277 313 0 2390 67 0 3 chr4 4546013 4546312 -197782035 - AluY SINE Alu -13 298 1 1958 153 3 7 chr4 4546606 4546906 -197781441 - AluJb SINE Alu -11 301 3 401 306 14 27 chr4 4547034 4547181 -197781166 - MIR SINE MIR -3 259 115 223 304 89 60 chr4 4547271 4547439 -197780908 - L2 LINE L2 -184 3088 2916 274 243 27 14 chr4 4547533 4547607 -197780740 + MIR SINE MIR 88 153 -55 1886 172 33 32 chr4 4547607 4548154 -197780193 - MLT2A2 LTR ERVL 0 554 4 601 203 209 89 chr4 4548529 4548844 -197779503 - MLT1J1 LTR MaLR -23 427 74 3957 205 22 54 chr4 4548908 4549297 -197779050 + L1MB7 LINE L1 4362 4762 -1422 1195 160 84 0 chr4 4549297 4549535 -197778812 + L1MB3 LINE L1 5923 6180 -3 3957 205 22 54 chr4 4549535 4549721 -197778626 + L1MB7 LINE L1 4762 4952 -1232 4285 65 0 7 chr4 4549721 4550275 -197778072 - L1PA13 LINE L1 -2 6161 5612 3957 205 22 54 chr4 4550275 4550708 -197777639 + L1MB7 LINE L1 4952 5397 -787 2160 108 3 0 chr4 4550708 4551003 -197777344 + AluSp SINE Alu 1 296 -17 3957 205 22 54 chr4 4551003 4551360 -197776987 + L1MB7 LINE L1 5397 5764 -420 2642 139 27 2 chr4 4551360 4551771 -197776576 - MSTB LTR MaLR -1 425 5 3957 205 22 54 chr4 4551771 4552287 -197776060 + L1MB7 LINE L1 5764 6184 0 314 246 89 73 chr4 4552335 4552562 -197775785 - L2 LINE L2 -186 3086 2856 263 241 51 25 chr4 4552685 4552764 -197775583 + L2 LINE L2 3146 3226 -46 561 286 85 5 chr4 4553766 4553955 -197774392 - MIR SINE MIR -57 205 2 299 250 0 0 chr4 4553960 4554032 -197774315 + MER81 DNA DNA 1 72 -42 1602 150 40 44 chr4 4554043 4554176 -197774171 + AluJo SINE Alu 1 133 -179 2365 104 0 0 chr4 4554176 4554474 -197773873 + AluSx SINE Alu 1 298 -14 1602 150 40 44 chr4 4554474 4554614 -197773733 + AluJo SINE Alu 133 273 -39 1805 154 129 7 chr4 4554726 4555126 -197773221 + MLT1D LTR MaLR 26 467 0 295 330 76 0 chr4 4555502 4555620 -197772727 - L2 LINE L2 0 3272 3146 620 266 107 64 chr4 4555621 4555833 -197772514 + Charlie7 DNA MER1_type 1 202 -2410 2027 118 81 35 chr4 4555833 4556181 -197772166 + THE1B LTR MaLR 1 364 0 620 266 107 64 chr4 4556181 4556499 -197771848 + Charlie7 DNA MER1_type 202 554 -2058 192 77 0 0 chr4 4556516 4556542 -197771805 + (GA)n Simple_repeat Simple_repeat 2 27 0 1843 159 7 3 chr4 4556797 4557117 -197771230 - AluJb SINE Alu 0 321 1 2197 138 52 6 chr4 4557162 4557510 -197770837 - THE1B LTR MaLR 0 364 1 822 231 7 0 chr4 4557512 4557659 -197770688 - FAM SINE Alu -36 149 2 314 200 91 0 chr4 4557660 4557770 -197770577 + Charlie7 DNA MER1_type 2453 2572 -40 227 227 0 30 chr4 4557961 4558027 -197770320 + MLT1J2 LTR MaLR 67 130 -320 850 249 121 55 chr4 4558029 4558548 -197769799 - MLT1G1 LTR MaLR -1 554 34 274 265 116 79 chr4 4558664 4558853 -197769494 + MLT1J LTR MaLR 310 505 -6 2064 101 0 8 chr4 4559151 4559418 -197768929 + AluSq SINE Alu 1 265 -48 1974 138 0 10 chr4 4559421 4559725 -197768622 + MLT1A1 LTR MaLR 65 365 0 593 261 43 68 chr4 4559733 4559967 -197768380 - MIR SINE MIR -29 233 6 389 312 12 58 chr4 4559966 4560139 -197768208 + MIR3 SINE MIR 40 204 -4 * 297 167 0 0 chr4 4560383 4560437 -197767910 + (CA)n Simple_repeat Simple_repeat 1 54 0 2365 115 0 0 chr4 4560803 4561115 -197767232 + AluSx SINE Alu 1 312 0 1137 258 79 25 chr4 4561331 4561398 -197766949 + MLT1L LTR MaLR 143 205 -410 2086 232 102 16 chr4 4561398 4561945 -197766402 + MLT1G1 LTR MaLR 2 595 0 1137 258 79 25 chr4 4561945 4562322 -197766025 + MLT1L LTR MaLR 205 611 -4 381 299 86 41 chr4 4562326 4562523 -197765824 - MIR SINE MIR -44 218 13 303 312 29 0 chr4 4562544 4562667 -197765680 + MIR SINE MIR 12 139 -69 1183 141 0 17 chr4 4563744 4563911 -197764436 - AluSg/x SINE Alu -12 300 135 2456 76 3 13 chr4 4563911 4564226 -197764121 - AluSq SINE Alu -1 312 1 2351 98 3 0 chr4 4564299 4564604 -197763743 - AluY SINE Alu -5 306 1 348 269 83 28 chr4 4564904 4565049 -197763298 + MIR SINE MIR 58 210 -52 233 279 135 29 chr4 4565398 4565502 -197762845 + MIR SINE MIR 67 181 -81 327 294 73 0 chr4 4565532 4565641 -197762706 + MIR SINE MIR 57 173 -89 577 254 29 35 chr4 4565837 4565978 -197762369 + MIR SINE MIR 31 172 -90 2297 105 0 7 chr4 4565978 4566304 -197762043 + AluSx SINE Alu 1 312 0 577 254 29 35 chr4 4566304 4566335 -197762012 + MIR SINE MIR 172 202 -60 327 260 0 0 chr4 4566578 4566655 -197761692 + L2 LINE L2 2981 3057 -215 210 369 29 0 chr4 4566876 4566979 -197761368 - MIR SINE MIR -91 171 66 647 277 66 31 chr4 4567218 4567536 -197760811 - L1MC4a LINE L1 -1922 5886 5558 2295 110 13 0 chr4 4567660 4567961 -197760386 - AluSx SINE Alu -7 305 1 216 290 32 0 chr4 4568032 4568094 -197760253 + MIR SINE MIR 81 144 -64 405 268 150 0 chr4 4568564 4568691 -197759656 - MIR SINE MIR 0 262 117 219 293 190 17 chr4 4569031 4569205 -197759142 - L2 LINE L2 -50 3222 3019 183 80 0 0 chr4 4569600 4569625 -197758722 + (A)n Simple_repeat Simple_repeat 1 25 0 673 276 98 19 chr4 4570398 4570612 -197757735 - MIR SINE MIR -3 259 29 1448 215 93 9 chr4 4570842 4571186 -197757161 - MLT1A2 LTR MaLR 0 374 2 690 297 67 5 chr4 4571286 4571481 -197756866 + MIR SINE MIR 50 256 -6 1749 137 96 0 chr4 4571491 4571761 -197756586 - AluJo SINE Alu -14 298 3 513 0 0 0 chr4 4571768 4571825 -197756522 + (TTA)n Simple_repeat Simple_repeat 3 59 0 1196 118 0 0 chr4 4571956 4572134 -197756213 - L1PA14 LINE L1 0 6161 5984 215 261 94 58 chr4 4572502 4572640 -197755707 + L2 LINE L2 2956 3098 -174 617 282 70 37 chr4 4572698 4572939 -197755408 + MIR SINE MIR 4 252 -10 325 232 0 14 chr4 4572983 4573052 -197755295 + L2 LINE L2 3242 3309 -4 208 269 30 0 chr4 4573526 4573593 -197754754 - MIR SINE MIR -7 255 187 1354 253 48 27 chr4 4573641 4573795 -197754552 + MLT1C LTR MaLR 17 166 -301 2181 118 0 6 chr4 4573795 4574108 -197754239 + AluSx SINE Alu 1 311 -1 1354 253 48 27 chr4 4574108 4574395 -197753952 + MLT1C LTR MaLR 166 467 0 1789 163 7 0 chr4 4575065 4575335 -197753012 + AluJo SINE Alu 33 304 -8 4799 128 55 3 chr4 4575585 4576325 -197752022 - MER4E LTR ERV1 0 779 1 1838 119 22 29 chr4 4576909 4577220 -197751127 + THE1B LTR MaLR 56 364 0 1159 202 175 19 chr4 4577220 4577591 -197750756 - MLT1C LTR MaLR -33 434 6 1476 208 140 20 chr4 4577807 4578206 -197750141 + MLT2B1 LTR ERVL 3 449 -71 25 51 0 0 chr4 4578227 4578266 -197750081 + AT_rich Low_complexity Low_complexity 1 39 0 325 265 12 0 chr4 4579095 4579178 -197749169 - MER81 DNA DNA -1 113 30 495 310 21 5 chr4 4579227 4579414 -197748933 - LTR16A LTR ERVL -104 346 157 376 195 114 57 chr4 4579421 4579620 -197748727 + MIR SINE MIR 44 259 -3 700 266 0 12 chr4 4579703 4579872 -197748475 - MIR SINE MIR 0 262 96 1813 179 0 28 chr4 4579921 4580294 -197748053 - AluJb SINE Alu 0 364 1 4272 191 12 21 chr4 4580360 4581247 -197747100 + L1MB5 LINE L1 5260 6138 -36 427 297 109 30 chr4 4581528 4581693 -197746654 + MER91A DNA MER1_type 1 178 -18 419 301 45 32 chr4 4582323 4582479 -197745868 + MIR3 SINE MIR 25 182 -26 542 180 0 0 chr4 4582598 4582698 -197745649 - L1M4 LINE L1 -463 5715 5616 2157 126 20 0 chr4 4582734 4583035 -197745312 - AluSq SINE Alu -6 307 1 2665 153 16 63 chr4 4583070 4583544 -197744803 - L1MB8 LINE L1 -17 6161 5717 2054 143 27 0 chr4 4583544 4583844 -197744503 + AluSx SINE Alu 1 308 -4 2665 153 16 63 chr4 4583844 4583939 -197744408 - L1MB8 LINE L1 -461 5717 5619 245 361 0 0 chr4 4583969 4584088 -197744259 - L2 LINE L2 -965 2349 2231 2089 224 38 19 chr4 4585062 4585589 -197742758 + MLT1F LTR MaLR 6 542 0 223 298 46 46 chr4 4586005 4586223 -197742124 - L2 LINE L2 -1108 2206 1989 959 224 0 0 chr4 4587549 4587719 -197740628 + MER5A DNA MER1_type 1 170 -19 1980 195 88 27 chr4 4587764 4588240 -197740107 + MLT1D LTR MaLR 1 505 0 244 280 37 19 chr4 4588385 4588492 -197739855 + LTR67 LTR ERVL 432 540 -17 558 257 11 73 chr4 4588563 4588673 -197739674 - MIR SINE MIR -17 245 149 3182 102 42 86 chr4 4588673 4589264 -197739083 - MER34B LTR ERV1 0 565 1 558 257 11 73 chr4 4589264 4589332 -197739015 - MIR SINE MIR -113 149 78 294 316 43 43 chr4 4589415 4589554 -197738793 + MIR SINE MIR 108 246 -16 434 301 3 7 chr4 4590326 4590460 -197737887 + MIR SINE MIR 17 150 -83 222 157 176 0 chr4 4590503 4590554 -197737793 - L2 LINE L2 -8 3305 3246 921 155 6 11 chr4 4590670 4590844 -197737503 + MLT1B LTR MaLR 1 173 -217 2343 99 16 0 chr4 4590848 4591151 -197737196 + AluSq SINE Alu 1 308 -5 2410 107 0 0 chr4 4591159 4591468 -197736879 + AluSq SINE Alu 1 309 -4 1350 187 38 29 chr4 4592381 4592697 -197735650 + MLT1A2 LTR MaLR 56 374 0 299 231 37 65 chr4 4593495 4593603 -197734744 + MIR SINE MIR 80 184 -78 482 162 20 10 chr4 4593653 4593752 -197734595 + MER96B DNA MER1_type? 32 131 -286 185 248 202 47 chr4 4593842 4593971 -197734376 + MIR SINE MIR 28 176 -86 215 240 73 62 chr4 4594360 4594456 -197733891 + MIR SINE MIR 133 229 -33 270 0 0 0 chr4 4595212 4595242 -197733105 + (TG)n Simple_repeat Simple_repeat 2 31 0 347 0 23 0 chr4 4595304 4595347 -197733000 + (TG)n Simple_repeat Simple_repeat 2 45 0 2864 78 16 3 chr4 4595598 4595968 -197732379 - THE1C LTR MaLR 0 375 1 395 254 60 8 chr4 4596096 4596230 -197732117 - LTR16A1 LTR ERVL -47 410 270 207 273 0 0 chr4 4596554 4596598 -197731749 + L2 LINE L2 3136 3179 -93 528 248 32 16 chr4 4596751 4596876 -197731471 + L2 LINE L2 3145 3271 -1 228 200 18 0 chr4 4597064 4597119 -197731228 - L2 LINE L2 -299 2973 2918 1792 128 134 15 chr4 4597440 4597775 -197730572 - THE1C LTR MaLR 0 375 1 2844 258 214 11 chr4 4598045 4599258 -197729089 + L1MC4 LINE L1 6446 7903 -139 341 118 0 0 chr4 4599352 4599403 -197728944 - MSTA LTR MaLR -376 52 2 803 294 124 13 chr4 4599596 4599956 -197728391 + L2 LINE L2 2738 3178 -135 2370 107 48 25 chr4 4599956 4600312 -197728035 + THE1B LTR MaLR 1 364 0 803 294 124 13 chr4 4600312 4600422 -197727925 + L2 LINE L2 3178 3274 -39 404 297 0 0 chr4 4600513 4600614 -197727733 - MIR SINE MIR -55 153 53 225 0 0 0 chr4 4600635 4600660 -197727687 + (CA)n Simple_repeat Simple_repeat 2 26 0 233 315 9 45 chr4 4600938 4601049 -197727298 - MER67B LTR ERV1 -500 161 55 568 275 40 29 chr4 4601301 4601538 -197726809 + MIR SINE MIR 2 247 -15 2289 105 3 0 chr4 4602171 4602467 -197725880 + AluSp SINE Alu 1 297 -16 358 292 62 0 chr4 4602546 4602642 -197725705 - L2 LINE L2 0 3313 3212 353 331 31 8 chr4 4602635 4602765 -197725582 + L2 LINE L2 2920 3052 -220 * 2958 128 27 2 chr4 4602837 4603321 -197725026 - L1MC2 LINE L1 -10 6334 5839 234 0 0 0 chr4 4603322 4603348 -197724999 + (T)n Simple_repeat Simple_repeat 1 26 0 320 272 19 19 chr4 4603410 4603513 -197724834 - LTR33 LTR ERVL -115 406 304 574 275 31 5 chr4 4603580 4603773 -197724574 - LTR33 LTR ERVL -323 198 1 383 198 207 18 chr4 4603775 4603886 -197724461 - MIR SINE MIR -58 204 73 2042 147 21 0 chr4 4603904 4604237 -197724110 - L1MC1 LINE L1 -480 5853 5514 217 227 18 172 chr4 4604701 4604864 -197723483 - L2 LINE L2 -81 3191 3054 246 261 161 97 chr4 4604882 4605231 -197723116 + MLT1I LTR MaLR 18 388 -21 301 275 14 56 chr4 4605510 4605652 -197722695 + MLT1L LTR MaLR 154 289 -326 296 282 68 8 chr4 4605924 4606041 -197722306 - MIR SINE MIR 0 262 139 270 0 0 0 chr4 4606361 4606391 -197721956 + (TTA)n Simple_repeat Simple_repeat 2 31 0 2225 63 44 0 chr4 4606395 4606665 -197721682 - AluY SINE Alu -29 282 1 1617 191 11 46 chr4 4606904 4607270 -197721077 + L1PA16 LINE L1 5814 6166 0 204 40 0 0 chr4 4607732 4607757 -197720590 + (CA)n Simple_repeat Simple_repeat 2 26 0 626 310 103 42 chr4 4607792 4608240 -197720107 + L3 LINE CR1 733 1207 -370 215 351 44 18 chr4 4608238 4608334 -197720013 + L2 LINE L2 3155 3256 -16 * 1726 146 3 57 chr4 4608334 4608649 -197719698 + AluJo SINE Alu 1 298 -14 215 351 44 18 chr4 4608649 4608666 -197719681 + L2 LINE L2 3256 3271 -1 191 403 17 0 chr4 4608660 4608779 -197719568 + L3 LINE CR1 1385 1505 -72 * 2571 157 29 5 chr4 4608827 4609242 -197719105 + MER61B LTR ERV1 1 425 0 251 193 53 0 chr4 4609352 4609409 -197718938 + GA-rich Low_complexity Low_complexity 2 61 0 201 39 0 0 chr4 4609501 4609527 -197718820 + (TTTTTG)n Simple_repeat Simple_repeat 2 27 0 215 268 138 65 chr4 4609558 4609681 -197718666 + L2 LINE L2 3169 3300 -13 219 69 0 0 chr4 4609681 4609710 -197718637 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 237 363 108 0 chr4 4610208 4610310 -197718037 + L2 LINE L2 3200 3312 -1 221 249 129 41 chr4 4610334 4610527 -197717820 - MIR SINE MIR -38 224 8 878 161 0 15 chr4 4610772 4610909 -197717438 + FRAM SINE Alu 20 154 -22 2164 114 7 0 chr4 4611868 4612177 -197716170 - AluSx SINE Alu 0 312 2 2248 96 0 20 chr4 4612190 4612491 -197715856 - AluSg SINE Alu -15 295 1 567 291 79 25 chr4 4612492 4612695 -197715652 + MIR SINE MIR 49 262 0 829 258 56 13 chr4 4614352 4614585 -197713762 - L3b LINE CR1 -159 1424 1182 328 277 178 50 chr4 4614855 4614913 -197713434 - MIR SINE MIR -28 234 185 2233 123 33 41 chr4 4614913 4615280 -197713067 + THE1B LTR MaLR 1 364 0 328 277 178 50 chr4 4615280 4615423 -197712924 - MIR SINE MIR -77 185 7 289 246 134 42 chr4 4615626 4615768 -197712579 + L2 LINE L2 3116 3270 -2 508 260 127 20 chr4 4615947 4616097 -197712250 + MIR3 SINE MIR 38 203 -5 2027 205 35 41 chr4 4616989 4617497 -197710850 + MLT1D LTR MaLR 1 505 0 2746 72 20 0 chr4 4617673 4618021 -197710326 - THE1A LTR MaLR 0 355 1 11780 95 16 1 chr4 4618021 4619578 -197708769 - THE1A-int LTR MaLR 0 1580 1 2896 71 3 0 chr4 4619578 4619932 -197708415 - THE1A LTR MaLR 0 355 1 466 180 128 10 chr4 4620334 4620455 -197707892 - MIR SINE MIR -65 143 28 351 0 0 0 chr4 4621196 4621235 -197707112 + (CA)n Simple_repeat Simple_repeat 1 39 0 1995 128 17 13 chr4 4621596 4621894 -197706453 - AluSx SINE Alu -12 300 2 1454 239 163 14 chr4 4622432 4622868 -197705479 - MLT1D LTR MaLR -4 501 1 2342 120 35 32 chr4 4622990 4623364 -197704983 - THE1C LTR MaLR 0 375 1 2365 105 0 31 chr4 4623514 4623870 -197704477 + AluSq SINE Alu 1 346 0 809 206 158 13 chr4 4624260 4624340 -197704007 - MLT1I LTR MaLR -3 406 339 3709 58 13 2 chr4 4624340 4624788 -197703559 + MLT2A2 LTR ERVL 1 453 0 809 206 158 13 chr4 4624788 4624935 -197703412 - MLT1I LTR MaLR -70 339 146 2372 148 2 15 chr4 4625042 4625440 -197702907 - Tigger2a DNA MER2_type -41 393 1 557 165 44 0 chr4 4625548 4625639 -197702708 + FAM SINE Alu 1 95 -90 2207 41 96 4 chr4 4626390 4626660 -197701687 + AluY SINE Alu 1 295 -16 515 184 72 0 chr4 4626734 4626859 -197701488 - Charlie1b DNA MER1_type 0 523 390 * 585 174 174 31 chr4 4626857 4627018 -197701329 - Charlie1b DNA MER1_type -262 261 78 964 156 17 6 chr4 4627136 4627309 -197701038 + FAM SINE Alu 1 175 0 306 354 76 0 chr4 4627561 4627705 -197700642 - MIR SINE MIR 0 262 108 221 340 31 10 chr4 4628652 4628749 -197699598 + L3 LINE CR1 1368 1466 -111 293 174 279 0 chr4 4629025 4629111 -197699236 + L2 LINE L2 3163 3272 0 243 338 42 0 chr4 4629117 4629188 -197699159 + L2 LINE L2 3134 3207 -65 606 195 113 1 chr4 4629195 4629354 -197698993 - MER69A DNA AcHobo 0 177 1 330 351 87 34 chr4 4629560 4629825 -197698522 - L2 LINE L2 -122 3150 2872 321 276 103 35 chr4 4629925 4630041 -197698306 + MIR SINE MIR 17 140 -68 387 299 28 0 chr4 4630453 4630560 -197697787 + L3 LINE CR1 1427 1536 -41 357 241 117 19 chr4 4631409 4631543 -197696804 + MIR SINE MIR 30 170 -65 323 279 112 39 chr4 4631861 4632040 -197696307 - MER117 DNA MER1_type 0 197 6 401 257 13 99 chr4 4632128 4632280 -197696067 - MIR3 SINE MIR -64 144 6 287 323 168 0 chr4 4632367 4632528 -197695819 + MIR SINE MIR 26 213 -49 361 300 27 0 chr4 4632529 4632639 -197695708 - MLT1K LTR MaLR -3 585 473 410 265 108 24 chr4 4633162 4633328 -197695019 + MIR3 SINE MIR 23 202 -6 21 0 0 0 chr4 4633968 4633989 -197694358 + AT_rich Low_complexity Low_complexity 1 21 0 2232 109 3 0 chr4 4634088 4634382 -197693965 + AluSp SINE Alu 1 295 -18 1336 167 31 108 chr4 4634503 4634637 -197693710 + MLT1A1 LTR MaLR 2 145 -220 2332 140 89 0 chr4 4634637 4635030 -197693317 - MSTA LTR MaLR 0 428 1 1336 167 31 108 chr4 4635030 4635285 -197693062 + MLT1A1 LTR MaLR 145 361 -4 223 294 168 25 chr4 4635455 4635574 -197692773 + MIR SINE MIR 29 164 -98 208 216 0 0 chr4 4635571 4635608 -197692739 + MIR SINE MIR 110 146 -62 * 378 200 56 11 chr4 4635615 4635705 -197692642 + MIR SINE MIR 99 192 -70 194 269 54 11 chr4 4636247 4636340 -197692007 - MIR3 SINE MIR -19 189 93 912 195 71 95 chr4 4636492 4636830 -197691517 + MLT1J LTR MaLR 45 374 -137 310 310 163 8 chr4 4636855 4636984 -197691363 - MIR SINE MIR -95 167 19 540 263 176 66 chr4 4637278 4637380 -197690967 + MLT1G1 LTR MaLR 3 92 -503 2193 125 3 0 chr4 4637380 4637677 -197690670 + AluSq SINE Alu 1 298 -15 540 263 176 66 chr4 4637677 4638107 -197690240 + MLT1G1 LTR MaLR 92 594 -1 612 139 9 26 chr4 4638941 4639056 -197689291 - L1MB7 LINE L1 -43 6141 6029 2148 135 3 13 chr4 4639066 4639241 -197689106 - AluSx SINE Alu -4 308 136 2055 133 7 7 chr4 4639241 4639541 -197688806 - AluSg1 SINE Alu -9 300 1 2148 135 3 13 chr4 4639541 4639676 -197688671 - AluSx SINE Alu -176 136 1 562 289 29 69 chr4 4639712 4639765 -197688582 - L1MC4a LINE L1 -1925 5883 5829 1898 171 0 13 chr4 4639765 4640074 -197688273 - AluJb SINE Alu -2 310 6 562 289 29 69 chr4 4640074 4640366 -197687981 - L1MC4a LINE L1 -1979 5829 5552 1096 216 103 23 chr4 4640585 4640962 -197687385 + MLT1J LTR MaLR 20 482 -29 288 250 99 24 chr4 4641057 4641292 -197687055 - L2 LINE L2 -22 3250 2935 701 96 36 2 chr4 4641770 4642021 -197686326 + AluSp SINE Alu 2 305 -8 361 322 70 74 chr4 4642299 4642758 -197685589 - L2 LINE L2 0 3272 2816 1477 231 58 14 chr4 4642964 4643392 -197684955 + MER39 LTR ERV1 261 707 0 1519 208 62 18 chr4 4643455 4643892 -197684455 - MLT1C LTR MaLR -4 463 8 290 179 218 0 chr4 4646224 4646302 -197682045 - MER5A DNA MER1_type -80 109 15 816 220 39 28 chr4 4646307 4646489 -197681858 - MER5A DNA MER1_type -5 184 1 322 312 24 16 chr4 4646640 4646765 -197681582 + L2 LINE L2 2944 3069 -203 498 216 89 10 chr4 4646926 4647064 -197681283 + MIR SINE MIR 54 206 -56 190 300 100 10 chr4 4647249 4647349 -197680998 - MIR SINE MIR -4 258 150 772 282 53 11 chr4 4647896 4648162 -197680185 + L2 LINE L2 3037 3313 0 4206 117 16 30 chr4 4648179 4648275 -197680072 + MER41B LTR ERV1 2 98 -537 2529 73 0 0 chr4 4648275 4648577 -197679770 - AluY SINE Alu -7 304 3 4206 117 16 30 chr4 4648577 4649123 -197679224 + MER41B LTR ERV1 98 635 0 350 297 21 41 chr4 4649291 4649436 -197678911 + MIR3 SINE MIR 3 144 -64 846 141 0 0 chr4 4649445 4649566 -197678781 + AluJb SINE Alu 3 123 -189 226 318 0 15 chr4 4650788 4650854 -197677493 - L2 LINE L2 -1 3271 3207 608 206 34 41 chr4 4651029 4651175 -197677172 + L2 LINE L2 3166 3310 -3 2362 64 0 7 chr4 4652207 4652503 -197675844 - AluSp SINE Alu -19 294 1 349 287 94 25 chr4 4652503 4652705 -197675642 - L1ME4a LINE L1 -294 5827 5612 481 51 51 25 chr4 4652713 4652733 -197675614 - Alu SINE Alu 0 310 292 2060 169 37 5 chr4 4652733 4653136 -197675211 - L1MB3 LINE L1 0 6183 5768 481 51 51 25 chr4 4653136 4653194 -197675153 - Alu SINE Alu -18 292 230 614 228 40 8 chr4 4653195 4653399 -197674948 - L1MB3 LINE L1 -381 5787 5503 356 261 8 0 chr4 4653530 4653649 -197674698 + (CCCA)n Simple_repeat Simple_repeat 3 122 0 955 137 11 0 chr4 4653702 4653877 -197674470 + (TCCA)n Simple_repeat Simple_repeat 3 179 0 198 0 0 0 chr4 4655932 4655954 -197672393 + (A)n Simple_repeat Simple_repeat 1 22 0 1429 188 41 0 chr4 4657417 4657688 -197670659 + AluJo SINE Alu 1 282 -30 333 0 0 0 chr4 4657691 4657728 -197670619 + (CA)n Simple_repeat Simple_repeat 2 38 0 331 246 123 43 chr4 4657897 4658035 -197670312 - L2 LINE L2 -4 3309 3161 1316 94 0 85 chr4 4658088 4658312 -197670035 - AluSg/x SINE Alu -3 309 105 566 217 7 43 chr4 4658328 4658466 -197669881 - AluSq/x SINE Alu -179 133 1 21 36 0 0 chr4 4658625 4658653 -197669694 + AT_rich Low_complexity Low_complexity 1 28 0 940 88 7 36 chr4 4658684 4658821 -197669526 - AluSq/x SINE Alu -179 133 1 1159 254 43 40 chr4 4658827 4659197 -197669150 + MLT1I LTR MaLR 39 409 0 185 340 64 21 chr4 4659422 4659516 -197668831 + MIR SINE MIR 163 260 -2 660 270 56 9 chr4 4659520 4659716 -197668631 - MIR SINE MIR -30 232 34 294 219 20 137 chr4 4659859 4660005 -197668342 - MLT1H LTR MaLR 0 549 421 232 278 14 14 chr4 4660186 4660258 -197668089 - MIR SINE MIR -157 105 34 208 235 15 15 chr4 4660342 4660410 -197667937 + (CATA)n Simple_repeat Simple_repeat 3 70 0 746 188 0 8 chr4 4660749 4660922 -197667425 - FLAM_C SINE Alu 0 172 1 281 293 53 0 chr4 4660992 4661067 -197667280 + MIR SINE MIR 119 197 -65 267 256 131 22 chr4 4661075 4661090 -197667257 + MIR3 SINE MIR 23 35 -173 2256 171 5 3 chr4 4661090 4661477 -197666870 - MLT1B LTR MaLR -2 388 1 267 256 131 22 chr4 4661477 4661598 -197666749 + MIR3 SINE MIR 35 174 -34 773 162 0 22 chr4 4662022 4662158 -197666189 - FLAM_A SINE Alu 0 133 1 248 306 58 40 chr4 4662387 4662560 -197665787 - L1MC/D LINE L1 -1910 5898 5723 204 179 74 28 chr4 4662561 4662650 -197665697 + MIR SINE MIR 93 253 -9 440 204 78 0 chr4 4662955 4663058 -197665289 - L2 LINE L2 0 3272 3162 2258 98 0 3 chr4 4663103 4663408 -197664939 + AluSx SINE Alu 1 304 -8 2069 131 0 0 chr4 4663821 4664112 -197664235 - AluSx SINE Alu -21 291 1 310 283 131 0 chr4 4664570 4664669 -197663678 + L2 LINE L2 3161 3272 0 804 207 62 43 chr4 4665164 4665372 -197662975 - MIR SINE MIR 0 262 51 1496 179 7 18 chr4 4665372 4665652 -197662695 - MLT1B LTR MaLR 0 390 114 255 311 29 19 chr4 4665672 4665775 -197662572 + MIR SINE MIR 117 220 -42 257 274 105 88 chr4 4665961 4666257 -197662090 + L2 LINE L2 2972 3272 0 339 303 103 12 chr4 4666356 4666521 -197661826 - L1ME4a LINE L1 -3 6118 5939 354 285 43 65 chr4 4666548 4666734 -197661613 - L1ME4a LINE L1 -157 5964 5783 278 371 101 3 chr4 4667371 4667659 -197660688 + L2 LINE L2 2915 3230 -42 1750 162 3 19 chr4 4667892 4668206 -197660141 + AluJo SINE Alu 1 309 -3 1852 233 90 32 chr4 4668433 4668990 -197659357 + MLT1E LTR MaLR 5 593 0 2177 101 0 3 chr4 4669159 4669456 -197658891 + AluSc SINE Alu 1 296 -13 253 257 14 14 chr4 4669737 4669811 -197658536 + LTR33A LTR ERVL 448 521 -2 285 253 66 22 chr4 4669813 4669904 -197658443 - L2 LINE L2 -41 3231 3137 467 193 34 39 chr4 4669953 4670080 -197658267 + MER69 DNA AcHobo 1 2467 -59 2195 96 6 13 chr4 4670102 4670414 -197657933 - AluSx SINE Alu -2 310 1 250 171 0 0 chr4 4670441 4670482 -197657865 + MER69 DNA AcHobo 2478 2518 -8 1759 188 115 65 chr4 4670943 4671437 -197656910 - MLT2B1 LTR ERVL 0 520 2 1729 114 16 75 chr4 4671437 4671743 -197656604 + AluSx SINE Alu 1 288 -24 2026 137 3 0 chr4 4671831 4672131 -197656216 + AluSp SINE Alu 1 301 -12 1098 275 45 27 chr4 4672266 4672640 -197655707 - LTR16C LTR ERVL 0 491 111 250 377 72 7 chr4 4672910 4673048 -197655299 + MIR SINE MIR 47 193 -69 415 261 22 22 chr4 4673774 4673866 -197654481 - MIR SINE MIR -86 122 31 307 325 87 8 chr4 4674150 4674276 -197654071 + MIR3 SINE MIR 60 195 -13 1104 149 0 2 chr4 4674276 4674618 -197653729 + (TCCA)n Simple_repeat Simple_repeat 1 521 0 226 320 60 33 chr4 4674833 4674983 -197653364 - MIR SINE MIR -25 237 84 625 216 227 0 chr4 4675021 4675197 -197653150 + MIR SINE MIR 45 260 -2 242 299 35 0 chr4 4675974 4676061 -197652286 + MIR SINE MIR 49 138 -124 1100 63 8 8 chr4 4676392 4676632 -197651715 + (TCTA)n Simple_repeat Simple_repeat 1 240 0 1207 197 42 11 chr4 4676649 4676913 -197651434 - AluJo SINE Alu -40 272 1 312 339 27 49 chr4 4677846 4678029 -197650318 - MIR3 SINE MIR -21 187 9 239 272 59 81 chr4 4678300 4678436 -197649911 + MIR SINE MIR 72 204 -58 515 264 83 7 chr4 4678554 4678698 -197649649 - L2 LINE L2 0 3313 3159 720 284 175 9 chr4 4678719 4679050 -197649297 - L2 LINE L2 -385 2929 2544 2330 136 25 0 chr4 4679406 4679766 -197648581 - L1PB1 LINE L1 0 6151 5783 1759 77 0 4 chr4 4679868 4680101 -197648246 - L1PB1 LINE L1 -375 5776 5545 2120 86 48 7 chr4 4680113 4680404 -197647943 - AluY SINE Alu -7 304 2 843 273 71 47 chr4 4680460 4680841 -197647506 - L1MEd LINE L1 -5719 400 11 513 270 43 37 chr4 4680893 4681056 -197647291 + MER5A DNA MER1_type 26 189 0 407 173 2 2 chr4 4681197 4681277 -197647070 - MER58 DNA MER1_type 0 2420 262 1925 137 3 0 chr4 4681351 4681636 -197646711 + AluSx SINE Alu 1 286 -26 534 129 0 0 chr4 4681636 4681721 -197646626 + (GGGA)n Simple_repeat Simple_repeat 2 86 0 2473 114 31 14 chr4 4682196 4682554 -197645793 + THE1B LTR MaLR 1 364 0 215 349 24 12 chr4 4683303 4683386 -197644961 - MIR SINE MIR -109 99 16 852 138 20 40 chr4 4683388 4683540 -197644807 + MLT1C LTR MaLR 15 163 -304 800 189 0 0 chr4 4683540 4683672 -197644675 - FRAM SINE Alu -8 168 37 1240 207 50 40 chr4 4683672 4683702 -197644645 + MLT1C LTR MaLR 157 185 -282 632 206 16 40 chr4 4683702 4683828 -197644519 + FLAM_A SINE Alu 1 123 -10 1240 207 50 40 chr4 4683828 4684096 -197644251 + MLT1C LTR MaLR 185 458 -9 964 244 129 58 chr4 4684215 4684650 -197643697 + MLT1J LTR MaLR 5 470 -41 360 173 0 0 chr4 4684782 4684857 -197643490 - L1MA10 LINE L1 -2 6332 6258 367 250 78 9 chr4 4684865 4684981 -197643366 - LTR40a LTR ERVL -353 166 43 783 288 105 27 chr4 4685139 4685549 -197642798 - LTR33 LTR ERVL -68 453 12 700 148 62 0 chr4 4686073 4686201 -197642146 + L1PA16 LINE L1 6028 6163 -3 256 340 10 20 chr4 4686554 4686654 -197641693 - MER5A DNA MER1_type -35 154 56 706 202 136 84 chr4 4687481 4687931 -197640416 - HAL1 LINE L1 -1187 1320 848 183 410 26 26 chr4 4687956 4688112 -197640235 + L2 LINE L2 2606 2761 -553 306 330 39 0 chr4 4688336 4688439 -197639908 - MIR SINE MIR -109 153 47 287 296 204 0 chr4 4689247 4689355 -197638992 + MIR3 SINE MIR 68 197 -11 846 274 36 4 chr4 4689868 4690120 -197638227 + MIR SINE MIR 3 262 0 231 248 78 23 chr4 4690566 4690695 -197637652 + L1M4 LINE L1 2915 3050 -3096 562 324 47 28 chr4 4690704 4690917 -197637430 + LTR16A LTR ERVL 1 217 -233 1272 221 50 16 chr4 4691216 4691538 -197636809 - MER74B LTR ERVL -79 543 211 237 204 0 0 chr4 4691575 4691624 -197636723 - MER74B LTR ERVL -573 49 1 539 201 22 22 chr4 4691651 4691785 -197636562 + LTR16A LTR ERVL 252 385 -65 2085 164 22 8 chr4 4691841 4692201 -197636146 - MLT1A1 LTR MaLR 0 365 1 345 285 30 6 chr4 4692214 4692379 -197635968 + L1M4 LINE L1 3094 3262 -2884 548 217 0 9 chr4 4692388 4692503 -197635844 + FLAM_C SINE Alu 24 137 -6 24 0 0 0 chr4 4692885 4692909 -197635438 + AT_rich Low_complexity Low_complexity 1 24 0 1707 171 24 0 chr4 4692928 4693215 -197635132 - AluSx SINE Alu -18 294 1 301 305 96 48 chr4 4693229 4693416 -197634931 - MIR SINE MIR -18 244 49 1109 220 33 11 chr4 4693657 4693930 -197634417 - MLT1C LTR MaLR -1 466 188 389 321 36 22 chr4 4694150 4694287 -197634060 + MIR SINE MIR 6 144 -118 259 222 48 16 chr4 4694510 4694573 -197633774 - MLT1K LTR MaLR -15 573 509 1485 206 71 52 chr4 4694684 4695059 -197633288 + Charlie4a DNA MER1_type 23 410 -1551 2060 113 0 3 chr4 4695059 4695350 -197632997 - AluSx SINE Alu -22 290 1 1485 206 71 52 chr4 4695350 4695451 -197632896 + Charlie4a DNA MER1_type 410 508 0 313 261 67 25 chr4 4695627 4695746 -197632601 + LTR16C LTR ERVL 261 384 -107 192 345 93 22 chr4 4695970 4696109 -197632238 - L2 LINE L2 -26 3287 3139 214 307 34 11 chr4 4696299 4696387 -197631960 + L2 LINE L2 2966 3055 -217 748 286 110 14 chr4 4696927 4697291 -197631056 + LTR16C LTR ERVL 93 491 0 244 303 40 0 chr4 4697581 4697657 -197630690 + MIR3 SINE MIR 89 167 -41 259 267 35 47 chr4 4697702 4697788 -197630559 + MIR SINE MIR 99 183 -79 743 238 99 46 chr4 4697961 4698095 -197630252 + MLT1C LTR MaLR 7 132 -258 2263 173 52 2 chr4 4698095 4698500 -197629847 - MSTB LTR MaLR 0 426 2 743 238 99 46 chr4 4698500 4698733 -197629614 + MLT1C LTR MaLR 132 375 -15 862 222 0 0 chr4 4698871 4699033 -197629314 - MER45A DNA AcHobo 0 178 17 199 231 0 19 chr4 4699249 4699301 -197629046 - MIR SINE MIR -138 70 20 408 271 33 8 chr4 4699377 4699499 -197628848 + MIR SINE MIR 102 226 -36 207 0 0 0 chr4 4700251 4700274 -197628073 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1739 232 18 8 chr4 4700277 4700669 -197627678 - L1MC2 LINE L1 -9 6335 5940 231 200 0 0 chr4 4701078 4701118 -197627229 + CT-rich Low_complexity Low_complexity 2 41 0 327 265 39 88 chr4 4701488 4701692 -197626655 + L2 LINE L2 2332 2525 -789 2123 177 9 0 chr4 4701966 4702299 -197626048 - MER1B DNA MER1_type 0 337 2 299 310 9 78 chr4 4703002 4703118 -197625229 - MIR SINE MIR -109 153 46 290 286 229 0 chr4 4703241 4703346 -197625001 - MIR3 SINE MIR -13 195 67 298 268 159 36 chr4 4703832 4703970 -197624377 + MIR SINE MIR 65 219 -43 1775 213 2 45 chr4 4704319 4704350 -197623997 - MLT2D LTR ERVL -10 404 373 282 56 0 0 chr4 4704350 4704386 -197623961 + (TG)n Simple_repeat Simple_repeat 1 36 0 1775 213 2 45 chr4 4704386 4704776 -197623571 - MLT2D LTR ERVL -41 373 1 301 240 54 70 chr4 4705611 4705677 -197622670 - MIR SINE MIR -11 251 186 2540 151 44 2 chr4 4705677 4706088 -197622259 + MSTA LTR MaLR 1 428 0 301 240 54 70 chr4 4706088 4706150 -197622197 - MIR SINE MIR -76 186 125 417 52 17 0 chr4 4706150 4706208 -197622139 + MSTA LTR MaLR 370 428 0 357 234 75 0 chr4 4706216 4706310 -197622037 - MIR SINE MIR -77 185 85 22 35 0 0 chr4 4706836 4706865 -197621482 + AT_rich Low_complexity Low_complexity 1 29 0 315 291 91 0 chr4 4706947 4707057 -197621290 + MIR SINE MIR 75 194 -68 481 255 41 107 chr4 4707408 4707604 -197620743 + MIR SINE MIR 16 198 -64 276 331 74 7 chr4 4708548 4708696 -197619651 + L2 LINE L2 2349 2506 -808 275 342 179 0 chr4 4708722 4708839 -197619508 - L2 LINE L2 -6 3266 3129 25 31 0 0 chr4 4709717 4709749 -197618598 + AT_rich Low_complexity Low_complexity 1 32 0 3292 109 82 25 chr4 4709813 4710384 -197617963 - MER4B LTR ERV1 -6 604 1 1408 239 55 97 chr4 4710407 4710775 -197617572 - L1ME2 LINE L1 -91 6073 5744 2701 112 43 24 chr4 4710775 4711195 -197617152 + MSTA LTR MaLR 1 428 0 1408 239 55 97 chr4 4711195 4711484 -197616863 - L1ME2 LINE L1 -420 5744 5444 231 322 35 56 chr4 4711568 4711711 -197616636 + MLT1K LTR MaLR 134 273 -315 552 314 114 43 chr4 4711988 4712338 -197616009 + L2 LINE L2 2897 3271 -1 746 269 123 8 chr4 4712442 4712835 -197615512 - LTR16C LTR ERVL -2 489 6 253 369 23 37 chr4 4712886 4713103 -197615244 + MIR SINE MIR 30 243 -19 231 290 93 9 chr4 4714512 4714619 -197613728 - MIR SINE MIR -112 150 35 293 317 48 0 chr4 4715339 4715443 -197612904 - MIR SINE MIR -104 158 50 264 300 200 4 chr4 4715515 4715755 -197612592 - L2 LINE L2 -160 3112 2826 3006 231 67 14 chr4 4715801 4716640 -197611707 + MER45B DNA AcHobo 110 992 -48 190 174 22 22 chr4 4716710 4716756 -197611591 + MIR SINE MIR 97 142 -66 401 316 53 21 chr4 4716771 4716958 -197611389 + MIR SINE MIR 1 193 -69 274 297 109 50 chr4 4716961 4717062 -197611285 + MIR SINE MIR 75 181 -81 22 0 0 0 chr4 4717116 4717138 -197611209 + AT_rich Low_complexity Low_complexity 1 22 0 1468 189 7 34 chr4 4717138 4717434 -197610913 - AluJb SINE Alu -24 288 1 482 165 0 0 chr4 4717649 4717728 -197610619 + MLT1A2 LTR MaLR 284 362 -12 2975 221 83 16 chr4 4717746 4718708 -197609639 + L1ME1 LINE L1 4834 5887 -279 2814 110 33 35 chr4 4718708 4719137 -197609210 + MSTC LTR MaLR 1 428 0 2975 221 83 16 chr4 4719137 4719434 -197608913 + L1ME1 LINE L1 5887 6163 -3 186 233 23 0 chr4 4719491 4719534 -197608813 - MIR SINE MIR -67 141 98 284 278 52 21 chr4 4719593 4719690 -197608657 - L2 LINE L2 -13 3300 3201 323 240 166 69 chr4 4719806 4720156 -197608191 + LTR33A LTR ERVL 3 386 -137 327 246 97 18 chr4 4721322 4721436 -197606911 - MLT1H LTR MaLR -3 546 424 832 283 32 18 chr4 4721436 4721719 -197606628 - L2 LINE L2 -886 2428 2142 631 279 14 40 chr4 4721843 4722065 -197606282 + Charlie8 DNA MER1_type 15 230 -2187 235 246 0 16 chr4 4722164 4722225 -197606122 + Charlie8 DNA MER1_type 2358 2417 0 324 203 0 40 chr4 4722969 4723043 -197605304 + MIR3 SINE MIR 93 163 -45 760 257 44 22 chr4 4723127 4723353 -197604994 + MIR SINE MIR 12 242 -20 769 223 76 6 chr4 4723437 4723825 -197604522 + MLT1C LTR MaLR 6 457 -10 255 342 52 11 chr4 4724006 4724155 -197604192 - MIR SINE MIR -75 133 7 197 113 38 94 chr4 4724216 4724269 -197604078 + L2 LINE L2 3264 3313 0 794 271 161 35 chr4 4725312 4725766 -197602581 - MLT1H LTR MaLR -17 532 22 2433 149 5 3 chr4 4725882 4726271 -197602076 - MLT1B LTR MaLR 0 390 1 1730 179 3 20 chr4 4727326 4727622 -197600725 + AluJo SINE Alu 1 291 -21 398 214 12 0 chr4 4728499 4728583 -197599764 - Tigger7 DNA MER2_type -6 2481 2397 * 1560 152 243 28 chr4 4728578 4729011 -197599336 - Tigger7 DNA MER2_type -1961 526 1 542 234 97 0 chr4 4729430 4729575 -197598772 + MIR SINE MIR 23 181 -81 363 267 0 0 chr4 4729799 4729874 -197598473 + MIR SINE MIR 71 145 -117 962 279 59 50 chr4 4729876 4730482 -197597865 + MLT2E LTR ERVL 1 612 -16 727 283 57 11 chr4 4730613 4730896 -197597451 - L1ME4a LINE L1 -267 5854 5559 1102 194 18 31 chr4 4732407 4732634 -197595713 - MER58A DNA MER1_type 0 224 1 474 268 65 22 chr4 4732808 4732946 -197595401 - MIR SINE MIR -97 165 22 320 233 207 7 chr4 4733174 4733324 -197595023 + MIR SINE MIR 77 256 -6 284 258 46 0 chr4 4733972 4734100 -197594247 - MIR3 SINE MIR -14 194 81 240 225 32 79 chr4 4735058 4735189 -197593158 - MIR SINE MIR -41 221 101 315 291 48 0 chr4 4736877 4736988 -197591359 + MIR SINE MIR 51 175 -33 219 220 0 0 chr4 4739989 4740039 -197588308 + A-rich Low_complexity Low_complexity 1 50 0 474 231 70 14 chr4 4740747 4740890 -197587457 + MIR SINE MIR 46 196 -66 252 248 266 9 chr4 4741467 4741580 -197586767 + MER5A DNA MER1_type 35 176 -13 191 262 24 0 chr4 4741815 4741857 -197586490 - L2 LINE L2 -19 3294 3252 264 192 77 0 chr4 4741911 4741963 -197586384 - MIR SINE MIR -138 124 69 294 338 74 26 chr4 4743327 4743718 -197584629 - L1ME4a LINE L1 -748 5398 4989 2850 13 0 0 chr4 4743724 4744033 -197584314 - AluYa5 SINE Alu -2 309 1 395 272 69 60 chr4 4745028 4745260 -197583087 - L2 LINE L2 -89 3183 2950 268 239 28 0 chr4 4745707 4745778 -197582569 - MIR3 SINE MIR -48 160 88 3486 184 41 15 chr4 4745870 4746598 -197581749 + L1MB5 LINE L1 5428 6174 0 1495 164 7 49 chr4 4746604 4746890 -197581457 + AluJo SINE Alu 3 276 -36 732 267 71 0 chr4 4747001 4747211 -197581136 - MIR SINE MIR -20 242 18 890 213 53 12 chr4 4747353 4747522 -197580825 - AluJo SINE Alu -136 176 1 2080 122 6 56 chr4 4747531 4747850 -197580497 - AluSx SINE Alu -9 303 1 238 302 0 16 chr4 4747910 4747973 -197580374 + MIR SINE MIR 201 262 0 1767 215 111 39 chr4 4748000 4748539 -197579808 - MLT1G1 LTR MaLR -12 583 6 252 369 141 0 chr4 4748613 4748811 -197579536 + MIR SINE MIR 31 256 -6 260 236 107 8 chr4 4749448 4749578 -197578769 + MIR SINE MIR 97 243 -19 467 236 189 40 chr4 4749586 4749725 -197578622 + MIR SINE MIR 10 127 -135 1935 146 0 54 chr4 4749725 4750041 -197578306 + AluJb SINE Alu 1 299 -13 467 236 189 40 chr4 4750041 4750113 -197578234 + MIR SINE MIR 127 259 -3 2027 158 0 13 chr4 4750245 4750561 -197577786 - AluJb SINE Alu 0 312 1 1144 206 71 0 chr4 4750569 4750851 -197577496 - L1MD2 LINE L1 -1 6358 6057 2097 111 0 0 chr4 4750901 4751172 -197577175 + AluSx SINE Alu 1 271 -41 2175 52 4 17 chr4 4751177 4751701 -197576646 + LTR10C LTR ERV1 11 591 0 204 97 0 0 chr4 4751716 4751747 -197576600 + (A)n Simple_repeat Simple_repeat 1 31 0 395 252 112 7 chr4 4751787 4751930 -197576417 + MIR SINE MIR 2 159 -103 262 290 12 0 chr4 4752002 4752101 -197576246 - MIR SINE MIR -75 133 33 394 299 222 14 chr4 4752141 4752348 -197575999 + MIR SINE MIR 13 262 0 26 0 0 0 chr4 4752384 4752410 -197575937 + AT_rich Low_complexity Low_complexity 1 26 0 207 319 14 0 chr4 4753759 4753831 -197574516 + MIR SINE MIR 67 139 -123 2859 16 0 0 chr4 4754761 4755072 -197573275 - AluYa5 SINE Alu 0 311 1 395 272 69 60 chr4 4756067 4756299 -197572048 - L2 LINE L2 -89 3183 2950 268 239 28 0 chr4 4756746 4756817 -197571530 - MIR3 SINE MIR -48 160 88 3486 184 41 15 chr4 4756909 4757637 -197570710 + L1MB5 LINE L1 5428 6174 0 1495 164 7 49 chr4 4757643 4757929 -197570418 + AluJo SINE Alu 3 276 -36 732 267 71 0 chr4 4758040 4758250 -197570097 - MIR SINE MIR -20 242 18 263 266 25 13 chr4 4759146 4759225 -197569122 - MIR SINE MIR -64 144 65 272 204 0 19 chr4 4759591 4759645 -197568702 + MIR SINE MIR 58 110 -152 610 198 87 17 chr4 4759762 4759934 -197568413 + MIR SINE MIR 65 248 -14 318 287 0 0 chr4 4759976 4760119 -197568228 + (CAT)n Simple_repeat Simple_repeat 1 143 0 657 230 0 0 chr4 4760172 4760350 -197567997 + (CAT)n Simple_repeat Simple_repeat 2 179 0 693 247 0 0 chr4 4760379 4760720 -197567627 + (CAT)n Simple_repeat Simple_repeat 1 341 0 396 211 0 26 chr4 4760732 4760888 -197567459 + (CAT)n Simple_repeat Simple_repeat 1 152 0 942 185 58 5 chr4 4761306 4761495 -197566852 - MLT1B LTR MaLR 0 390 192 612 185 80 25 chr4 4761575 4761737 -197566610 - MLT1B LTR MaLR -217 173 3 678 329 40 9 chr4 4761751 4761976 -197566371 - MIR SINE MIR -11 251 20 3517 176 97 130 chr4 4762098 4762212 -197566135 + Charlie1a DNA MER1_type 85 201 -2560 1446 6 0 0 chr4 4762212 4762375 -197565972 + (CTATG)n Simple_repeat Simple_repeat 3 165 0 3517 176 97 130 chr4 4762375 4762905 -197565442 + Charlie1a DNA MER1_type 201 747 -2014 2242 110 0 3 chr4 4762905 4763195 -197565152 - AluSc SINE Alu -20 289 1 3517 176 97 130 chr4 4763195 4763924 -197564423 + Charlie1a DNA MER1_type 747 1414 -1347 2296 125 0 0 chr4 4763924 4764227 -197564120 + AluSx SINE Alu 1 303 -9 3517 176 97 130 chr4 4764227 4764268 -197564079 + Charlie1a DNA MER1_type 1414 1455 0 189 297 27 14 chr4 4764274 4764348 -197563999 - MIR SINE MIR -119 143 69 557 270 94 60 chr4 4764393 4764711 -197563636 + LTR16A LTR ERVL 76 404 -46 389 184 26 0 chr4 4765229 4765305 -197563042 + MIR SINE MIR 111 188 -74 313 289 118 7 chr4 4766004 4766139 -197562208 - L3 LINE CR1 -3 1574 1425 219 216 0 0 chr4 4766435 4766472 -197561875 - L2 LINE L2 -91 3181 3145 490 242 67 36 chr4 4766570 4766735 -197561612 + MIR SINE MIR 22 191 -71 634 249 30 18 chr4 4767198 4767367 -197560980 + MIR SINE MIR 22 192 -70 727 304 98 23 chr4 4767611 4767957 -197560390 + L3 LINE CR1 1204 1575 -2 1148 261 112 8 chr4 4767984 4768378 -197559969 - MLT1J2 LTR MaLR -3 447 13 329 289 125 0 chr4 4768416 4768520 -197559827 - L2 LINE L2 0 3272 3156 183 242 97 0 chr4 4768640 4768702 -197559645 + MIR SINE MIR 105 172 -90 221 315 33 11 chr4 4769165 4769257 -197559090 - MIR SINE MIR -122 140 47 383 269 187 8 chr4 4769478 4769612 -197558735 + MIR SINE MIR 4 161 -101 331 299 173 16 chr4 4770203 4770330 -197558017 - L2 LINE L2 -3 3269 3123 346 263 76 42 chr4 4770343 4770461 -197557886 + MIR SINE MIR 80 201 -61 311 276 51 27 chr4 4770870 4771009 -197557338 + MIR SINE MIR 16 154 -65 369 288 54 9 chr4 4771058 4771169 -197557178 + L2 LINE L2 3193 3308 -5 218 200 25 0 chr4 4771171 4771211 -197557136 + L2 LINE L2 3230 3270 -2 208 347 13 13 chr4 4771306 4771381 -197556966 - MIR SINE MIR -64 144 70 540 279 79 70 chr4 4771461 4771877 -197556470 - MLT1L LTR MaLR 0 615 196 327 299 31 20 chr4 4772075 4772213 -197556134 - MIR SINE MIR -67 141 16 495 195 108 104 chr4 4772538 4772825 -197555522 + L1MC4 LINE L1 7626 7913 -129 3678 161 63 6 chr4 4772868 4773531 -197554816 + MER44D DNA MER2_type 5 705 0 244 120 40 0 chr4 4773553 4773603 -197554744 + (CATATA)n Simple_repeat Simple_repeat 5 56 0 285 258 62 55 chr4 4773623 4773751 -197554596 + L1MC4 LINE L1 7914 8042 0 27 0 0 0 chr4 4773756 4773783 -197554564 + AT_rich Low_complexity Low_complexity 1 27 0 387 0 0 0 chr4 4774210 4774253 -197554094 + (CA)n Simple_repeat Simple_repeat 1 43 0 240 230 40 27 chr4 4775014 4775088 -197553259 + L2 LINE L2 2909 2983 -289 456 244 0 0 chr4 4775377 4775467 -197552880 - MIR SINE MIR -103 159 70 469 281 64 41 chr4 4775820 4775991 -197552356 + MER63A DNA MER1_type 1 175 -35 314 270 9 52 chr4 4776023 4776138 -197552209 - MIR SINE MIR -81 181 72 236 231 0 19 chr4 4776376 4776428 -197551919 - MIR SINE MIR -108 100 50 1564 215 55 25 chr4 4776731 4777094 -197551253 + MLT1A2 LTR MaLR 1 374 0 1786 157 168 8 chr4 4777358 4777727 -197550620 + MSTA LTR MaLR 1 428 0 9598 117 19 38 chr4 4777730 4779332 -197549015 + MSTA-int LTR MaLR 4 1575 -5 1895 164 143 11 chr4 4779344 4779722 -197548625 + MSTA LTR MaLR 1 428 0 709 293 57 51 chr4 4779746 4779954 -197548393 - MLT1J LTR MaLR -157 354 142 872 110 0 52 chr4 4779954 4780090 -197548257 + FLAM_C SINE Alu 5 133 0 709 293 57 51 chr4 4780090 4780233 -197548114 - MLT1J LTR MaLR -369 142 1 199 263 0 0 chr4 4780845 4780883 -197547464 + L2 LINE L2 3251 3288 -25 226 269 39 26 chr4 4780944 4781022 -197547325 + MIR SINE MIR 184 262 0 450 295 126 46 chr4 4781057 4781342 -197547005 - L2 LINE L2 0 3272 2965 709 242 66 16 chr4 4782978 4783169 -197545178 + MIR3 SINE MIR 1 201 -7 670 223 0 17 chr4 4783181 4783473 -197544874 + (ATGGTG)n Simple_repeat Simple_repeat 1 287 0 843 204 0 0 chr4 4783475 4783711 -197544636 + (TGG)n Simple_repeat Simple_repeat 1 236 0 243 204 0 0 chr4 4783733 4783787 -197544560 + (TGG)n Simple_repeat Simple_repeat 2 55 0 374 314 72 42 chr4 4783808 4784044 -197544303 - MIR SINE MIR -19 243 1 193 362 48 19 chr4 4784244 4784349 -197543998 + L2 LINE L2 2649 2756 -558 192 348 43 17 chr4 4784415 4784530 -197543817 + L2 LINE L2 2871 2988 -284 424 265 55 61 chr4 4784676 4784857 -197543490 + MIR SINE MIR 13 192 -70 1917 166 13 7 chr4 4785247 4785549 -197542798 - AluJb SINE Alu -8 304 1 201 283 208 9 chr4 4785842 4785948 -197542399 - MIR3 SINE MIR -52 156 30 360 255 145 86 chr4 4786250 4786678 -197541669 - MLT1J LTR MaLR -58 453 1 292 273 61 11 chr4 4786926 4787050 -197541297 + MIR SINE MIR 38 166 -59 4251 274 68 31 chr4 4787050 4787282 -197541065 + L1ME1 LINE L1 22 244 -6152 1586 214 97 3 chr4 4787282 4787642 -197540705 - MSTD LTR MaLR 0 396 3 4251 274 68 31 chr4 4787642 4789401 -197538946 + L1ME1 LINE L1 244 2086 -4310 2293 245 76 27 chr4 4789404 4789956 -197538391 + L1ME1 LINE L1 4923 5446 -789 1413 199 40 34 chr4 4789956 4790252 -197538095 + AluJo SINE Alu 5 302 -10 2293 245 76 27 chr4 4790252 4790959 -197537388 + L1ME1 LINE L1 5446 6230 -5 769 248 36 18 chr4 4791104 4791356 -197536991 - MIR SINE MIR 0 262 6 1613 132 53 64 chr4 4791910 4792225 -197536122 + AluSx SINE Alu 5 316 0 2494 191 48 4 chr4 4792579 4793062 -197535285 + MLT1D LTR MaLR 1 504 -1 571 299 107 14 chr4 4793228 4793509 -197534838 + LTR16A LTR ERVL 113 419 -31 682 172 86 32 chr4 4793826 4794012 -197534335 + MLT1H1 LTR MaLR 360 555 0 340 285 30 35 chr4 4794142 4794310 -197534037 - MIR SINE MIR -18 244 76 296 296 11 0 chr4 4794336 4794424 -197533923 - L2 LINE L2 0 3313 3225 184 295 45 45 chr4 4794434 4794546 -197533801 - L2 LINE L2 -205 3108 2997 273 278 204 0 chr4 4794897 4795005 -197533342 + MIR SINE MIR 23 152 -110 319 294 84 0 chr4 4795152 4795271 -197533076 - L2 LINE L2 0 3272 3144 187 333 107 0 chr4 4795315 4795399 -197532948 - L2 LINE L2 -248 3024 2932 236 335 143 11 chr4 4795450 4795632 -197532715 - L2 LINE L2 -508 2806 2601 407 240 224 22 chr4 4795636 4795815 -197532532 - L2 LINE L2 0 3313 3099 263 240 74 25 chr4 4796182 4796303 -197532044 - L1ME3 LINE L1 -8 6154 6028 217 296 67 137 chr4 4796649 4796933 -197531414 + L2 LINE L2 2943 3206 -66 491 273 86 0 chr4 4797312 4797440 -197530907 + MIR SINE MIR 35 173 -89 21 0 0 0 chr4 4798099 4798120 -197530227 + AT_rich Low_complexity Low_complexity 1 21 0 229 258 61 0 chr4 4798290 4798356 -197529991 - MIR SINE MIR -78 184 115 187 227 0 91 chr4 4799089 4799155 -197529192 + MIR SINE MIR 64 123 -139 412 274 49 97 chr4 4799328 4799554 -197528793 + L2 LINE L2 3027 3241 -31 2067 171 28 6 chr4 4799554 4799911 -197528436 + MLT1A1 LTR MaLR 1 365 0 185 65 32 0 chr4 4799941 4799972 -197528375 + (TGAA)n Simple_repeat Simple_repeat 3 34 0 296 296 22 44 chr4 4799973 4800108 -197528239 - MIR SINE MIR -78 184 53 649 299 124 39 chr4 4801050 4801485 -197526862 + L2 LINE L2 2216 2687 -627 535 296 77 6 chr4 4801553 4801722 -197526625 - MIR SINE MIR -19 243 63 252 231 0 0 chr4 4802167 4802219 -197526128 + L1MB1 LINE L1 6119 6170 -19 408 173 0 36 chr4 4802225 4802335 -197526012 + GA-rich Low_complexity Low_complexity 4 109 0 485 242 22 67 chr4 4802352 4802530 -197525817 - MIR3 SINE MIR -9 199 30 7820 123 15 7 chr4 4803569 4805589 -197522758 + L1PA8A LINE L1 4095 6131 0 290 198 74 12 chr4 4805668 4805749 -197522598 + MIR SINE MIR 105 190 -72 273 281 0 62 chr4 4806060 4806156 -197522191 - MIR3 SINE MIR -32 176 87 2212 139 71 15 chr4 4806185 4806452 -197521895 - MSTB1 LTR MaLR -14 418 120 2700 101 0 5 chr4 4806452 4806827 -197521520 + THE1C LTR MaLR 3 375 0 2212 139 71 15 chr4 4806827 4806955 -197521392 - MSTB1 LTR MaLR -312 120 1 185 247 104 52 chr4 4807421 4807498 -197520849 + L2 LINE L2 3208 3288 -25 359 235 82 0 chr4 4809287 4809385 -197518962 - MIR SINE MIR -109 153 48 385 228 66 81 chr4 4809758 4809894 -197518453 + MIR SINE MIR 2 135 -127 317 291 10 10 chr4 4810758 4810861 -197517486 + MIR SINE MIR 77 179 -83 585 222 16 16 chr4 4810903 4811029 -197517318 + MIR SINE MIR 23 148 -114 1983 154 128 8 chr4 4811037 4811419 -197516928 + MSTA LTR MaLR 1 428 0 7867 168 45 36 chr4 4811419 4813056 -197515291 + MSTA-int LTR MaLR 1 1651 0 1952 135 141 8 chr4 4813056 4813433 -197514914 + MSTA LTR MaLR 1 427 -1 252 363 40 45 chr4 4813457 4813680 -197514667 - MIR SINE MIR -31 231 10 213 39 0 0 chr4 4814062 4814088 -197514259 + (TTCA)n Simple_repeat Simple_repeat 2 27 0 3763 157 21 30 chr4 4814171 4814938 -197513409 + L1MB3 LINE L1 5422 6181 -2 2710 90 0 6 chr4 4815091 4815457 -197512890 - THE1B LTR MaLR 0 364 1 224 161 138 46 chr4 4815525 4815612 -197512735 - MER5A DNA MER1_type -81 108 14 248 163 0 0 chr4 4815719 4815762 -197512585 - MLT2C2 LTR ERVL -2 462 420 232 109 18 18 chr4 4815765 4815820 -197512527 + (TC)n Simple_repeat Simple_repeat 2 56 0 * 314 289 7 0 chr4 4815817 4815966 -197512381 + (TCCA)n Simple_repeat Simple_repeat 3 152 0 * 429 195 11 38 chr4 4815940 4816125 -197512222 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 2466 81 0 0 chr4 4816164 4816460 -197511887 - AluY SINE Alu -13 298 3 2014 174 56 5 chr4 4816467 4816857 -197511490 - MLT2C2 LTR ERVL -50 414 5 394 293 45 19 chr4 4816864 4817021 -197511326 + MIR SINE MIR 73 233 -29 1448 243 91 7 chr4 4817615 4818034 -197510313 + MLT1C LTR MaLR 6 459 -8 206 215 46 31 chr4 4818256 4818321 -197510026 + L2 LINE L2 3236 3301 -12 395 178 22 40 chr4 4818644 4818875 -197509472 + CT-rich Low_complexity Low_complexity 1 227 0 277 255 57 28 chr4 4819901 4820007 -197508340 - MIR SINE MIR -63 145 37 236 212 45 15 chr4 4820020 4820086 -197508261 - L3 LINE CR1 -667 910 843 355 311 106 8 chr4 4820116 4820380 -197507967 - L1ME4a LINE L1 0 6121 5832 219 214 0 0 chr4 4820396 4820438 -197507909 - MIR SINE MIR -14 248 207 1813 120 53 25 chr4 4820551 4820834 -197507513 - AluJb SINE Alu -21 291 1 1295 203 77 40 chr4 4820904 4821073 -197507274 + MLT1B LTR MaLR 1 162 -228 2148 71 15 4 chr4 4821073 4821342 -197507005 + AluY SINE Alu 1 272 -39 1295 203 77 40 chr4 4821342 4821547 -197506800 + MLT1B LTR MaLR 162 389 -1 448 252 8 0 chr4 4821548 4821671 -197506676 + L1MA10 LINE L1 6204 6327 -7 445 258 104 16 chr4 4821852 4822034 -197506313 + MIR SINE MIR 63 260 -2 181 255 0 43 chr4 4822154 4822201 -197506146 - MER5A DNA MER1_type -5 184 140 418 143 12 0 chr4 4822211 4822295 -197506052 - L1PB2 LINE L1 0 6151 6067 2183 96 0 0 chr4 4822299 4822600 -197505747 + L1PB1 LINE L1 5823 6123 -28 1280 108 36 0 chr4 4822611 4822805 -197505542 - L1PB2 LINE L1 -366 5785 5585 427 303 75 11 chr4 4823088 4823276 -197505071 - MIR SINE MIR -62 200 1 5914 195 17 15 chr4 4823386 4824607 -197503740 + L1MC1 LINE L1 4285 5503 -830 2164 147 28 19 chr4 4824607 4824968 -197503379 - THE1B LTR MaLR 0 364 1 5914 195 17 15 chr4 4824968 4825504 -197502843 + L1MC1 LINE L1 5503 6049 -284 2015 164 3 0 chr4 4825504 4825814 -197502533 + AluJb SINE Alu 1 311 -1 5914 195 17 15 chr4 4825814 4826097 -197502250 + L1MC1 LINE L1 6049 6330 -3 944 246 87 48 chr4 4826107 4826338 -197502009 - MLT1I LTR MaLR 0 409 158 1955 174 0 0 chr4 4826338 4826631 -197501716 - AluJo SINE Alu -19 293 1 944 246 87 48 chr4 4826631 4826756 -197501591 - MLT1I LTR MaLR -251 158 39 251 375 10 0 chr4 4827038 4827142 -197501205 + MIR SINE MIR 41 145 -63 296 322 26 0 chr4 4827288 4827403 -197500944 + Charlie8 DNA MER1_type 118 235 -2182 353 265 8 8 chr4 4827568 4827827 -197500520 + (TG)n Simple_repeat Simple_repeat 1 259 0 229 238 0 32 chr4 4828689 4828752 -197499595 + (CAGAGA)n Simple_repeat Simple_repeat 3 63 0 229 118 39 0 chr4 4828756 4828807 -197499540 + GA-rich Low_complexity Low_complexity 1 53 0 297 311 60 20 chr4 4829402 4829553 -197498794 - MIR SINE MIR -54 208 52 442 257 164 13 chr4 4829701 4829853 -197498494 - MER5A DNA MER1_type -6 183 9 368 287 49 18 chr4 4830042 4830206 -197498141 + MIR SINE MIR 20 188 -74 992 224 38 19 chr4 4830214 4830477 -197497870 - MLT1C LTR MaLR 0 467 200 542 278 25 0 chr4 4830966 4831128 -197497219 - MER5A DNA MER1_type 0 189 24 237 327 40 40 chr4 4831123 4831224 -197497123 - MIR SINE MIR -91 171 71 * 1869 124 4 18 chr4 4831730 4832005 -197496342 + AluSx SINE Alu 41 311 -1 283 224 0 0 chr4 4832732 4832790 -197495557 + MIR SINE MIR 62 119 -143 191 146 24 0 chr4 4833156 4833197 -197495150 + (TGGG)n Simple_repeat Simple_repeat 3 44 0 227 254 53 30 chr4 4833784 4833885 -197494462 - MIR SINE MIR -58 150 47 226 234 0 0 chr4 4834243 4834290 -197494057 + MIR SINE MIR 107 153 -109 1276 216 41 84 chr4 4834482 4834968 -197493379 + MLT1C LTR MaLR 1 465 -2 2189 106 0 11 chr4 4835156 4835467 -197492880 + AluSx SINE Alu 3 310 0 2294 111 0 0 chr4 4835544 4835841 -197492506 - AluSx SINE Alu -15 297 1 284 300 114 14 chr4 4836320 4836460 -197491887 + MIR SINE MIR 59 212 -50 236 271 59 0 chr4 4836579 4836664 -197491683 + MIR SINE MIR 109 198 -64 252 298 58 41 chr4 4837427 4837548 -197490799 + MIR SINE MIR 78 200 -62 427 223 35 24 chr4 4837684 4837844 -197490503 - MIR SINE MIR 0 262 100 923 60 0 0 chr4 4837890 4838007 -197490340 + FLAM_C SINE Alu 1 117 -16 1175 269 71 35 chr4 4838007 4838526 -197489821 - L2 LINE L2 -6 3307 2776 190 342 51 0 chr4 4838723 4838802 -197489545 + MIR SINE MIR 98 180 -82 385 268 45 45 chr4 4838872 4839029 -197489318 - MIR SINE MIR -85 177 21 279 276 35 11 chr4 4839683 4839770 -197488577 + MIR3 SINE MIR 82 170 -38 1898 156 7 13 chr4 4839785 4840092 -197488255 + AluJo SINE Alu 1 305 -7 342 297 130 0 chr4 4840567 4840705 -197487642 + MIR SINE MIR 105 260 -2 217 357 84 7 chr4 4841170 4841324 -197487023 + MIR SINE MIR 49 214 -48 299 344 58 7 chr4 4841621 4841775 -197486572 + MIR3 SINE MIR 25 186 -22 262 0 26 26 chr4 4841776 4841815 -197486532 + (TTTTG)n Simple_repeat Simple_repeat 4 42 0 1679 127 27 60 chr4 4843921 4844221 -197484126 - AluJo SINE Alu -13 299 10 511 290 32 68 chr4 4844291 4844539 -197483808 + MIR SINE MIR 20 258 -4 1206 122 0 0 chr4 4846985 4847181 -197481166 + Tigger4(Zombi) DNA MER2_type 2479 2674 -57 1083 206 50 52 chr4 4847185 4847549 -197480798 + THE1C LTR MaLR 1 363 -12 189 154 0 0 chr4 4848903 4848942 -197479405 + (CA)n Simple_repeat Simple_repeat 1 39 0 820 247 94 66 chr4 4849721 4850076 -197478271 + MLT1D LTR MaLR 24 397 -108 2160 125 0 3 chr4 4850076 4850371 -197477976 - AluSx SINE Alu -18 294 1 820 247 94 66 chr4 4850371 4850484 -197477863 + MLT1D LTR MaLR 397 505 0 479 216 58 29 chr4 4850561 4850774 -197477573 - L1M LINE L1 -740 5424 5207 1080 180 149 34 chr4 4851285 4851580 -197476767 - THE1C LTR MaLR -46 329 1 520 343 30 4 chr4 4851850 4852121 -197476226 + L1MC4 LINE L1 6446 6723 -1319 181 219 0 109 chr4 4853073 4853137 -197475210 - MIR3 SINE MIR 0 208 152 901 259 214 5 chr4 4853168 4853551 -197474796 - L2 LINE L2 0 3313 2851 21 0 0 0 chr4 4854126 4854147 -197474200 + AT_rich Low_complexity Low_complexity 1 21 0 303 289 10 10 chr4 4854672 4854769 -197473578 + L1M4 LINE L1 4923 5019 -1127 2158 89 25 0 chr4 4854778 4855059 -197473288 + AluSp SINE Alu 1 288 -25 244 279 55 33 chr4 4855078 4855151 -197473196 + L1M4 LINE L1 5010 5080 -1066 2352 100 0 6 chr4 4855151 4855462 -197472885 - AluY SINE Alu -2 309 1 244 279 55 33 chr4 4855462 4855571 -197472776 + L1M4 LINE L1 5080 5196 -950 563 203 42 10 chr4 4855682 4855894 -197472453 + L1M4 LINE L1 5207 5424 -740 1027 240 92 63 chr4 4855971 4856084 -197472263 - MLT1D LTR MaLR 0 505 397 2160 125 0 3 chr4 4856084 4856379 -197471968 + AluSx SINE Alu 1 294 -18 1027 240 92 63 chr4 4856379 4856756 -197471591 - MLT1D LTR MaLR -108 397 1 3415 130 65 25 chr4 4857521 4858036 -197470311 - MER51A LTR ERV1 -9 625 81 2322 96 0 0 chr4 4858036 4858328 -197470019 - AluSq SINE Alu -21 292 1 3415 130 65 25 chr4 4858328 4858413 -197469934 - MER51A LTR ERV1 -553 81 1 1281 122 0 21 chr4 4858611 4858799 -197469548 - FRAM SINE Alu 0 176 1 340 200 147 36 chr4 4858932 4859071 -197469276 + MIR SINE MIR 2 153 -66 257 250 10 52 chr4 4859274 4859370 -197468977 + MIR SINE MIR 109 200 -62 351 113 0 0 chr4 4859418 4859471 -197468876 + (TTA)n Simple_repeat Simple_repeat 1 53 0 1207 289 36 31 chr4 4860187 4860624 -197467723 - MLT1J LTR MaLR 0 511 38 339 261 89 52 chr4 4860710 4860849 -197467498 + MIR SINE MIR 4 146 -66 731 171 0 0 chr4 4861037 4861175 -197467172 - FRAM SINE Alu 0 166 29 219 231 0 0 chr4 4861313 4861352 -197466995 - MER5A DNA MER1_type -90 99 61 1952 117 4 0 chr4 4861421 4861677 -197466670 + AluSx SINE Alu 1 257 -55 210 37 0 0 chr4 4861683 4861710 -197466637 + (CAAA)n Simple_repeat Simple_repeat 3 29 0 817 150 0 8 chr4 4861719 4861839 -197466508 - AluJb SINE Alu -84 228 110 726 139 0 0 chr4 4861953 4862068 -197466279 + AluSp/q SINE Alu 193 307 -6 480 146 9 27 chr4 4862068 4862178 -197466169 + GA-rich Low_complexity Low_complexity 1 108 0 189 0 0 0 chr4 4862906 4862927 -197465420 + (TTA)n Simple_repeat Simple_repeat 1 21 0 280 306 8 24 chr4 4863646 4863770 -197464577 + GA-rich Low_complexity Low_complexity 4 125 0 22 80 0 0 chr4 4864142 4864192 -197464155 + GC_rich Low_complexity Low_complexity 1 50 0 25 65 0 0 chr4 4864349 4864395 -197463952 + GC_rich Low_complexity Low_complexity 1 46 0 22 35 0 0 chr4 4865683 4865712 -197462635 + GC_rich Low_complexity Low_complexity 1 29 0 209 93 70 0 chr4 4865831 4865874 -197462473 + T-rich Low_complexity Low_complexity 3 48 0 236 309 40 92 chr4 4866840 4866992 -197461355 + MIR SINE MIR 119 262 0 361 257 20 61 chr4 4867685 4867833 -197460514 - MIR3 SINE MIR -26 182 41 351 65 0 0 chr4 4867917 4867963 -197460384 + (A)n Simple_repeat Simple_repeat 1 46 0 21 0 0 0 chr4 4868122 4868143 -197460204 + AT_rich Low_complexity Low_complexity 1 21 0 27 81 0 0 chr4 4868222 4868284 -197460063 + AT_rich Low_complexity Low_complexity 1 62 0 221 246 35 0 chr4 4869920 4869977 -197458370 + MIR3 SINE MIR 98 156 -52 22 106 0 0 chr4 4870299 4870384 -197457963 + GC_rich Low_complexity Low_complexity 1 85 0 319 350 34 0 chr4 4870890 4871007 -197457340 - MIR SINE MIR -122 140 20 23 54 0 0 chr4 4871683 4871720 -197456627 + GC_rich Low_complexity Low_complexity 1 37 0 356 239 17 39 chr4 4872100 4872280 -197456067 + (CA)n Simple_repeat Simple_repeat 1 176 0 405 293 88 7 chr4 4873114 4873261 -197455086 + MIR SINE MIR 33 191 -71 382 326 79 26 chr4 4874321 4874548 -197453799 - MIR SINE MIR -6 256 18 412 224 84 0 chr4 4874913 4875020 -197453327 - MIR SINE MIR -66 196 81 192 251 57 32 chr4 4875288 4875382 -197452965 - MIR SINE MIR -55 153 56 292 309 122 26 chr4 4875432 4875662 -197452685 - L2 LINE L2 -136 3177 2926 346 324 20 0 chr4 4876302 4876450 -197451897 - MIR SINE MIR -36 226 76 277 225 56 0 chr4 4876468 4876539 -197451808 + MER96 DNA MER1_type? 20 94 -81 257 304 16 11 chr4 4876797 4876976 -197451371 - MIR SINE MIR -19 243 65 2028 238 97 54 chr4 4878552 4879431 -197448916 + MER45C DNA AcHobo 5 953 0 289 254 182 39 chr4 4879997 4880178 -197448169 + L2 LINE L2 3107 3313 0 388 272 7 37 chr4 4880309 4880445 -197447902 - L2 LINE L2 -11 3302 3171 22 0 0 0 chr4 4880510 4880532 -197447815 + AT_rich Low_complexity Low_complexity 1 22 0 1057 139 0 17 chr4 4880687 4880860 -197447487 - L1PA8 LINE L1 -8 6164 5995 2113 102 0 54 chr4 4880879 4881192 -197447155 - AluSx SINE Alu -16 296 1 394 325 8 0 chr4 4881197 4881320 -197447027 - MIR SINE MIR -118 144 21 984 291 91 20 chr4 4881381 4881875 -197446472 + L2 LINE L2 2783 3312 -1 2046 126 0 36 chr4 4881878 4882187 -197446160 - AluSx SINE Alu -14 298 1 803 244 16 51 chr4 4882802 4883056 -197445291 + MIR SINE MIR 3 247 -15 280 333 56 43 chr4 4883209 4883371 -197444976 - MIR SINE MIR -76 186 23 2124 138 0 3 chr4 4883793 4884084 -197444263 - AluJb SINE Alu -22 290 1 266 265 72 66 chr4 4884094 4884275 -197444072 - MIR SINE MIR -73 189 8 35 54 0 0 chr4 4884822 4884878 -197443469 + AT_rich Low_complexity Low_complexity 1 56 0 2206 287 65 14 chr4 4884963 4885844 -197442503 - HAL1 LINE L1 0 2507 1582 530 251 151 0 chr4 4885876 4886075 -197442272 - HAL1 LINE L1 -976 1531 1303 2091 180 30 13 chr4 4886078 4886473 -197441874 + Tigger4(Zombi) DNA MER2_type 1 402 -2329 2301 101 0 0 chr4 4886478 4886774 -197441573 + AluSq SINE Alu 1 296 -17 25 31 0 0 chr4 4886774 4886806 -197441541 + AT_rich Low_complexity Low_complexity 1 32 0 2067 161 50 48 chr4 4886806 4887267 -197441080 + Tigger4(Zombi) DNA MER2_type 392 853 -1878 703 192 8 0 chr4 4887267 4887392 -197440955 + AluJ SINE Alu 1 126 -186 819 206 16 38 chr4 4887606 4887790 -197440557 + AluJ SINE Alu 116 295 -17 1263 141 0 0 chr4 4887790 4887981 -197440366 + AluSc SINE Alu 119 309 0 2482 142 21 16 chr4 4887998 4888421 -197439926 + Tigger4(Zombi) DNA MER2_type 829 1253 -1478 889 144 0 0 chr4 4888456 4888574 -197439773 - FLAM_C SINE Alu -25 118 1 5501 131 24 11 chr4 4888576 4888640 -197439707 + Tigger4(Zombi) DNA MER2_type 1237 1299 -1432 1583 183 72 11 chr4 4888640 4888942 -197439405 - AluJo SINE Alu 0 312 1 5501 131 24 11 chr4 4888942 4889789 -197438558 + Tigger4(Zombi) DNA MER2_type 1299 2160 -571 975 79 9 2 chr4 4889827 4890086 -197438261 + AluSx SINE Alu 1 306 0 1439 148 52 20 chr4 4890096 4890401 -197437946 + Tigger4(Zombi) DNA MER2_type 2178 2492 -239 2588 117 2 8 chr4 4890538 4890939 -197437408 - L1P LINE L1 -5745 401 3 248 208 31 39 chr4 4890940 4891070 -197437277 - L1MEc LINE L1 -2185 4030 3902 472 151 54 0 chr4 4891070 4891163 -197437184 - MSTB LTR MaLR 0 426 329 2825 206 20 43 chr4 4891176 4891510 -197436837 - L1MEc LINE L1 -3066 3149 2809 1616 206 7 4 chr4 4891510 4891812 -197436535 - AluJb SINE Alu 0 303 1 2825 206 20 43 chr4 4891812 4892331 -197436016 - L1MEc LINE L1 -3406 2809 2315 15003 92 1 1 chr4 4892612 4894800 -197433547 + L1P LINE L1 2814 5001 -1145 726 139 0 0 chr4 4895414 4895529 -197432818 + AluSp/q SINE Alu 193 307 -6 188 0 0 69 chr4 4895529 4895558 -197432789 + (GGA)n Simple_repeat Simple_repeat 1 27 0 37 70 0 0 chr4 4896819 4896862 -197431485 + AT_rich Low_complexity Low_complexity 1 43 0 213 194 0 0 chr4 4897072 4897108 -197431239 + (TG)n Simple_repeat Simple_repeat 1 36 0 4343 268 41 20 chr4 4897108 4897752 -197430595 - L1MEc LINE L1 -4318 2078 1449 203 0 0 36 chr4 4897752 4897780 -197430567 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 1141 196 61 88 chr4 4897784 4898080 -197430267 - AluJo SINE Alu -14 288 1 4343 268 41 20 chr4 4898080 4899025 -197429322 - L1MEc LINE L1 -4949 1447 450 382 333 7 0 chr4 4899042 4899189 -197429158 - L1MEc LINE L1 -6026 370 223 1588 171 171 16 chr4 4899235 4899604 -197428743 + MSTA LTR MaLR 1 426 -2 1408 205 51 60 chr4 4899607 4900041 -197428306 + MLT1D LTR MaLR 76 505 0 1867 244 26 2 chr4 4900043 4900503 -197427844 + MLT1D-int LTR MaLR 4 474 -897 1275 204 110 31 chr4 4900476 4900859 -197427488 - L1ME2 LINE L1 -100 6064 5652 * 235 164 46 46 chr4 4901408 4901560 -197426787 + (TA)n Simple_repeat Simple_repeat 1 152 0 963 271 94 59 chr4 4901792 4902217 -197426130 + MLT1J1 LTR MaLR 7 446 0 793 196 111 7 chr4 4902260 4902413 -197425934 + FAM SINE Alu 1 169 -6 35484 29 2 0 chr4 4902513 4907499 -197420848 + L1PA3 LINE L1 1161 6154 -1 943 286 23 0 chr4 4907470 4907774 -197420573 + L1M4 LINE L1 3928 4238 -1908 * 4810 66 11 1 chr4 4907924 4908963 -197419384 + L1PA7 LINE L1 5005 6154 0 209 122 0 24 chr4 4909304 4909345 -197419002 + (TTTTTG)n Simple_repeat Simple_repeat 3 42 0 21 0 0 0 chr4 4909726 4909747 -197418600 + AT_rich Low_complexity Low_complexity 1 21 0 365 297 50 50 chr4 4909776 4909889 -197418458 - MIR SINE MIR -74 188 73 534 243 18 0 chr4 4909889 4910000 -197418347 - MER81 DNA DNA -1 113 1 365 297 50 50 chr4 4910000 4910068 -197418279 - MIR SINE MIR -188 74 7 219 303 0 45 chr4 4910090 4910179 -197418168 - MIR SINE MIR -163 99 15 1917 80 3 45 chr4 4910463 4910749 -197417598 + AluSx SINE Alu 1 274 -38 297 118 0 0 chr4 4910857 4910908 -197417439 + (TC)n Simple_repeat Simple_repeat 2 52 0 902 283 29 18 chr4 4911259 4911531 -197416816 + MLT1J LTR MaLR 11 285 -226 358 281 26 18 chr4 4911563 4911677 -197416670 + L1MEd LINE L1 693 807 -5312 267 288 25 0 chr4 4911688 4911768 -197416579 + MLT1J LTR MaLR 313 394 -117 2442 159 23 21 chr4 4911907 4912334 -197416013 + MSTB1 LTR MaLR 1 428 -4 378 271 189 0 chr4 4912554 4912676 -197415671 - MIR SINE MIR -1 261 117 277 231 68 60 chr4 4912674 4912791 -197415556 + L2 LINE L2 2861 2978 -294 * 568 206 48 0 chr4 4912825 4912971 -197415376 - MER53 DNA DNA -8 181 29 2155 117 0 0 chr4 4912986 4913295 -197415052 - AluSc SINE Alu 0 309 1 546 279 27 100 chr4 4913318 4913329 -197415018 + L2 LINE L2 2962 2972 -300 2041 124 7 7 chr4 4913329 4913636 -197414711 - AluSx SINE Alu -5 307 1 546 279 27 100 chr4 4913636 4913954 -197414393 + L2 LINE L2 2972 3267 -5 202 343 14 0 chr4 4913946 4914019 -197414328 - MIR SINE MIR -135 127 54 * 736 279 36 0 chr4 4914137 4914356 -197413991 + MIR SINE MIR 25 251 -11 285 350 162 23 chr4 4914368 4914523 -197413824 + L2 LINE L2 2846 2978 -335 1936 117 14 0 chr4 4914523 4914806 -197413541 + AluSg SINE Alu 1 287 -23 285 350 162 23 chr4 4914806 4915039 -197413308 + L2 LINE L2 2978 3288 -25 184 194 0 28 chr4 4915185 4915221 -197413126 - L2 LINE L2 -3 3310 3276 319 330 78 28 chr4 4915446 4915611 -197412736 - MIR SINE MIR -65 143 4 250 233 0 0 chr4 4915785 4915845 -197412502 + (TTCA)n Simple_repeat Simple_repeat 2 61 0 193 136 0 68 chr4 4916299 4916343 -197412004 - L2 LINE L2 -101 3212 3172 3464 234 58 28 chr4 4916505 4916535 -197411812 - MER45B DNA AcHobo -570 1011 983 4041 113 33 6 chr4 4916535 4917180 -197411167 + L1PB2 LINE L1 5482 6143 -8 3464 234 58 28 chr4 4917180 4917270 -197411077 - MER45B DNA AcHobo -598 983 897 1862 142 26 13 chr4 4917270 4917573 -197410774 + AluSx SINE Alu 1 307 -5 3464 234 58 28 chr4 4917573 4918376 -197409971 - MER45B DNA AcHobo -684 897 59 232 329 38 0 chr4 4919562 4919641 -197408706 - MIR SINE MIR -117 145 64 288 239 5 178 chr4 4920294 4920491 -197407856 - MLT1H LTR MaLR -375 174 12 398 309 20 26 chr4 4920555 4920707 -197407640 + MIR SINE MIR 47 197 -65 474 197 12 4 chr4 4920918 4921020 -197407327 + MER2 DNA MER2_type 1 101 -138 276 30 0 0 chr4 4921127 4921160 -197407187 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 205 281 97 18 chr4 4921508 4921622 -197406725 - MIR SINE MIR -51 211 89 498 188 40 10 chr4 4921926 4922027 -197406320 - MIR3 SINE MIR -41 167 64 216 0 0 0 chr4 4922044 4922068 -197406279 + (TC)n Simple_repeat Simple_repeat 1 24 0 * 342 0 0 0 chr4 4922067 4922105 -197406242 + (CA)n Simple_repeat Simple_repeat 1 38 0 406 224 12 0 chr4 4922710 4922795 -197405552 + MIR SINE MIR 71 156 -106 187 297 33 33 chr4 4923029 4923120 -197405227 - MIR SINE MIR -7 255 165 212 258 175 10 chr4 4923176 4923273 -197405074 - MIR SINE MIR -46 216 104 243 61 0 0 chr4 4923335 4923368 -197404979 + (TC)n Simple_repeat Simple_repeat 1 33 0 2134 129 44 41 chr4 4923633 4923996 -197404351 - THE1B LTR MaLR 0 364 1 192 222 48 16 chr4 4924341 4924404 -197403943 + L2 LINE L2 3207 3271 -1 364 274 7 78 chr4 4924470 4924517 -197403830 - MIR3 SINE MIR -52 156 107 2056 143 12 70 chr4 4924517 4924931 -197403416 + MLT1B LTR MaLR 1 390 0 364 274 7 78 chr4 4924931 4925036 -197403311 - MIR3 SINE MIR -101 107 15 2091 101 0 20 chr4 4925197 4925503 -197402844 + AluSq SINE Alu 1 300 -13 539 282 65 77 chr4 4925736 4925984 -197402363 + MIR SINE MIR 15 259 -3 23 0 0 0 chr4 4926052 4926075 -197402272 + AT_rich Low_complexity Low_complexity 1 23 0 420 324 0 0 chr4 4927245 4927353 -197400994 - MER81 DNA DNA -6 108 1 530 259 22 22 chr4 4927712 4927851 -197400496 - MIR SINE MIR -118 144 6 191 229 314 38 chr4 4928086 4928191 -197400156 + MIR3 SINE MIR 10 143 -65 * 283 232 101 0 chr4 4928165 4928234 -197400113 + MIR SINE MIR 117 192 -70 276 236 28 14 chr4 4928263 4928335 -197400012 - MIR SINE MIR -6 256 184 571 157 102 0 chr4 4928441 4928549 -197399798 - MER53 DNA DNA -68 121 3 784 173 161 0 chr4 4928968 4929130 -197399217 + MER5A DNA MER1_type 2 189 0 326 263 34 42 chr4 4930377 4930495 -197397852 - L2 LINE L2 -70 3243 3127 2811 239 31 50 chr4 4930587 4931041 -197397306 - L1ME1 LINE L1 -5 6161 5729 1585 154 48 0 chr4 4931041 4931314 -197397033 - AluJb SINE Alu -26 286 1 2811 239 31 50 chr4 4931314 4931748 -197396599 - L1ME1 LINE L1 -437 5729 5289 374 246 64 0 chr4 4931730 4931840 -197396507 - L1ME1 LINE L1 -1741 4405 4289 * 1963 99 18 0 chr4 4931972 4932245 -197396102 - AluSx SINE Alu -30 282 5 1572 127 0 27 chr4 4932253 4932453 -197395894 + Tigger4(Zombi) DNA MER2_type 2479 2672 -59 1922 140 64 17 chr4 4932453 4932811 -197395536 + THE1C LTR MaLR 1 375 0 1572 127 0 27 chr4 4932811 4932870 -197395477 + Tigger4(Zombi) DNA MER2_type 2672 2731 0 1141 261 106 79 chr4 4932889 4933675 -197394672 - HAL1 LINE L1 -1254 1253 447 331 210 0 25 chr4 4933855 4933936 -197394411 + MLT1C LTR MaLR 386 464 -3 316 266 9 101 chr4 4934383 4934492 -197393855 - MIR SINE MIR -74 134 36 1416 193 46 21 chr4 4935019 4935346 -197393001 + MLT1A1 LTR MaLR 31 365 0 304 145 0 157 chr4 4935977 4936060 -197392287 + MIR SINE MIR 107 176 -86 246 336 164 0 chr4 4936211 4936321 -197392026 + L2 LINE L2 3180 3307 -6 269 318 86 20 chr4 4937228 4937379 -197390968 + MIR SINE MIR 23 183 -79 237 33 0 0 chr4 4937427 4937457 -197390890 + (TG)n Simple_repeat Simple_repeat 2 31 0 366 224 0 13 chr4 4938310 4938386 -197389961 - AluJb SINE Alu 0 302 228 884 174 17 17 chr4 4938386 4938558 -197389789 - AluJb SINE Alu -140 172 1 653 311 55 0 chr4 4938825 4939044 -197389303 + MIR SINE MIR 1 231 -31 1401 222 58 51 chr4 4939046 4939497 -197388850 + MLT1D LTR MaLR 1 454 -51 332 133 17 0 chr4 4941158 4941218 -197387129 + MLT1D LTR MaLR 442 502 -3 664 157 33 0 chr4 4941440 4941561 -197386786 + MLT1D LTR MaLR 1 125 -380 1927 160 37 62 chr4 4941563 4942006 -197386341 + MLT2B2 LTR ERVL 3 414 0 417 147 0 15 chr4 4942010 4942078 -197386269 - MLT1E1 LTR MaLR -1 653 587 1826 209 27 8 chr4 4942081 4942450 -197385897 + MLT1D LTR MaLR 130 505 0 1673 205 67 14 chr4 4942543 4942914 -197385433 - MLT1E LTR MaLR 0 593 203 308 265 61 10 chr4 4942950 4943003 -197385344 - MLT1E LTR MaLR -490 103 54 1983 122 49 30 chr4 4943003 4943371 -197384976 - THE1C LTR MaLR 0 375 1 308 265 61 10 chr4 4943371 4943415 -197384932 - MLT1E LTR MaLR -539 54 1 498 248 102 13 chr4 4943520 4943677 -197384670 + MIR SINE MIR 41 211 -51 364 287 119 45 chr4 4943796 4944040 -197384307 + MLT1J LTR MaLR 5 266 -245 269 238 105 9 chr4 4944078 4944183 -197384164 + MLT1J LTR MaLR 347 461 -50 227 272 37 25 chr4 4944316 4944397 -197383950 - LTR16A1 LTR ERVL 0 457 376 901 198 104 85 chr4 4944849 4945213 -197383134 - MLT1C LTR MaLR -96 371 1 289 284 164 35 chr4 4945245 4945555 -197382792 - MLT1K LTR MaLR -16 572 223 1619 239 67 16 chr4 4946052 4946488 -197381859 - MLT1C LTR MaLR 0 467 10 452 188 50 0 chr4 4946548 4946649 -197381698 + LTR16C LTR ERVL 385 490 -1 413 338 13 19 chr4 4946791 4946945 -197381402 - MIR SINE MIR -100 162 10 3842 161 38 56 chr4 4947164 4947807 -197380540 - L1MA7 LINE L1 -1 6290 5637 1932 140 15 82 chr4 4947807 4948207 -197380140 - THE1C LTR MaLR -2 373 1 3842 161 38 56 chr4 4948207 4948271 -197380076 - L1MA7 LINE L1 -654 5637 5573 2401 70 3 0 chr4 4948271 4948573 -197379774 - AluY SINE Alu -8 303 1 3842 161 38 56 chr4 4948573 4948704 -197379643 - L1MA7 LINE L1 -718 5573 5466 375 304 83 80 chr4 4949195 4949655 -197378692 - MLT1K LTR MaLR -22 566 106 404 241 12 0 chr4 4949746 4949829 -197378518 - HERV16 LTR ERVL -2072 2924 2841 1318 326 73 30 chr4 4949861 4950787 -197377560 - HERV16 LTR ERVL -2264 2732 1765 5647 160 28 29 chr4 4950867 4952339 -197376008 - L1MA4 LINE L1 -2 6298 4804 * 10385 177 16 3 chr4 4952338 4954395 -197373952 + L1 LINE L1 2628 4711 -1435 1103 130 0 0 chr4 4954395 4954595 -197373752 + AluSg/x SINE Alu 131 330 0 712 101 0 0 chr4 4954595 4954694 -197373653 + L1 LINE L1 4708 4806 -1340 1003 310 117 79 chr4 4954742 4955629 -197372718 - HERV16 LTR ERVL -3555 1441 748 2153 139 12 18 chr4 4955957 4956296 -197372051 + MER1B DNA MER1_type 1 337 0 383 162 0 15 chr4 4956364 4956432 -197371915 - MLT1A2 LTR MaLR 0 374 308 1645 112 75 0 chr4 4956432 4956673 -197371674 + AluSx SINE Alu 1 259 -53 1491 207 25 19 chr4 4956707 4957021 -197371326 - MLT1A2 LTR MaLR -58 316 1 471 348 65 0 chr4 4957023 4957224 -197371123 - HERV16 LTR ERVL -4761 235 22 431 250 47 8 chr4 4957231 4957359 -197370988 + MLT1A1 LTR MaLR 229 361 -4 1341 179 82 15 chr4 4957811 4957928 -197370419 + AluJo SINE Alu 1 109 -203 480 18 0 0 chr4 4957928 4957985 -197370362 + (CA)n Simple_repeat Simple_repeat 2 58 0 1341 179 82 15 chr4 4957985 4958135 -197370212 + AluJo SINE Alu 109 286 -26 779 172 208 37 chr4 4958283 4958514 -197369833 + MLT2B2 LTR ERVL 174 493 -22 392 307 114 6 chr4 4958760 4958926 -197369421 - MIR SINE MIR -75 187 4 348 321 84 11 chr4 4959581 4959771 -197368576 - MIR3 SINE MIR -2 206 3 739 298 69 40 chr4 4960259 4960706 -197367641 - LTR33 LTR ERVL 0 521 62 423 231 111 34 chr4 4960750 4960968 -197367379 + Charlie8 DNA MER1_type 83 1386 -1031 180 234 160 75 chr4 4961010 4961104 -197367243 - MIR SINE MIR -87 121 20 202 319 44 0 chr4 4962067 4962158 -197366189 + L2 LINE L2 3094 3188 -125 321 53 0 0 chr4 4962158 4962196 -197366151 + THE1C LTR MaLR 123 160 -215 * 550 186 105 24 chr4 4962184 4962308 -197366039 - THE1C LTR MaLR -241 134 1 6533 101 8 6 chr4 4962308 4963189 -197365158 - THE1C-int LTR MaLR 0 1580 698 2148 72 7 17 chr4 4963177 4963470 -197364877 - THE1C-int LTR MaLR -1290 290 1 * 2056 146 64 14 chr4 4963470 4963827 -197364520 - THE1C LTR MaLR 0 375 1 524 282 15 8 chr4 4963829 4963960 -197364387 + L2 LINE L2 3182 3313 0 219 358 123 12 chr4 4966262 4966424 -197361923 + MIR SINE MIR 79 258 -4 1088 117 0 134 chr4 4966715 4966938 -197361409 - 7SK RNA RNA 0 193 1 1663 140 59 0 chr4 4967585 4967856 -197360491 - AluSq SINE Alu -15 298 12 197 284 58 77 chr4 4968445 4968600 -197359747 + MIR3 SINE MIR 4 155 -53 372 308 6 38 chr4 4969097 4969254 -197359093 + MIR SINE MIR 45 191 -65 186 222 56 19 chr4 4969433 4969487 -197358860 + MIR3 SINE MIR 9 64 -144 2099 100 81 36 chr4 4969526 4969885 -197358462 + THE1C LTR MaLR 1 375 0 525 282 77 23 chr4 4969943 4970202 -197358145 - LTR16C LTR ERVL -4 487 215 197 269 39 0 chr4 4970412 4970464 -197357883 + MIR SINE MIR 209 262 0 327 235 15 91 chr4 4970483 4970615 -197357732 + MLT1L LTR MaLR 43 164 -451 5081 111 10 9 chr4 4970745 4971612 -197356735 - L1P3 LINE L1 -4549 1912 1051 5753 106 2 7 chr4 4971612 4972115 -197356232 + L1P LINE L1 1644 2143 -4003 3315 137 8 6 chr4 4972115 4972625 -197355722 + MER9 LTR ERVK 1 511 0 5753 106 2 7 chr4 4972625 4972953 -197355394 + L1P LINE L1 2143 2471 -3675 4118 141 34 23 chr4 5023042 5023739 -197304608 + MER44D DNA MER2_type 1 705 0 205 188 35 35 chr4 5023924 5024009 -197304338 + (TATAA)n Simple_repeat Simple_repeat 5 89 0 2811 78 54 29 chr4 5024042 5024450 -197303897 - L1PB2 LINE L1 -2 6149 5732 786 127 11 33 chr4 5025450 5025631 -197302716 + (TTCC)n Simple_repeat Simple_repeat 2 178 0 1212 136 99 113 chr4 5025639 5025941 -197302406 - AluJo SINE Alu -1 311 14 233 247 0 55 chr4 5026099 5026172 -197302175 + GA-rich Low_complexity Low_complexity 4 72 0 403 178 0 0 chr4 5026882 5026955 -197301392 + MIR SINE MIR 78 150 -112 213 279 0 93 chr4 5027030 5027116 -197301231 + L3 LINE CR1 1411 1488 -89 758 80 0 9 chr4 5027153 5027265 -197301082 + (TTCC)n Simple_repeat Simple_repeat 2 112 0 1933 137 9 40 chr4 5027265 5027587 -197300760 - AluSx SINE Alu 0 312 1 245 111 44 0 chr4 5027723 5027768 -197300579 + C-rich Low_complexity Low_complexity 3 49 0 360 286 100 55 chr4 5028235 5028792 -197299555 - L1ME3A LINE L1 -273 5897 5286 * 421 284 5 58 chr4 5028784 5028901 -197299446 - L1ME3A LINE L1 -2029 4117 4012 2674 122 11 3 chr4 5028901 5029262 -197299085 + THE1B LTR MaLR 1 364 0 421 284 5 58 chr4 5029262 5029334 -197299013 - L1ME3A LINE L1 -2134 4012 3938 1352 251 61 10 chr4 5029339 5029746 -197298601 - L1ME3A LINE L1 -1 6169 5742 865 245 116 4 chr4 5029768 5030001 -197298346 - L1ME3A LINE L1 -517 5653 5395 830 166 0 21 chr4 5030002 5030147 -197298200 + FLAM_C SINE Alu 1 142 -1 958 192 12 75 chr4 5030275 5030321 -197298026 - MER33 DNA MER1_type -2359 226 179 2066 93 8 0 chr4 5030321 5030589 -197297758 - AluSx SINE Alu -12 300 31 958 192 12 75 chr4 5030589 5030782 -197297565 - MER33 DNA MER1_type -2406 179 2 448 265 80 15 chr4 5030790 5031171 -197297176 - L1ME LINE L1 -654 5508 5107 278 154 51 8 chr4 5031181 5031298 -197297049 + (TA)n Simple_repeat Simple_repeat 1 122 0 777 126 20 16 chr4 5031322 5031831 -197296516 + (TA)n Simple_repeat Simple_repeat 1 511 0 26 0 0 0 chr4 5031831 5031857 -197296490 + AT_rich Low_complexity Low_complexity 1 26 0 354 304 66 28 chr4 5031915 5032096 -197296251 + L2 LINE L2 2005 2192 -1122 433 242 160 45 chr4 5032119 5032388 -197295959 - LTR50 LTR ERVL 0 795 496 645 191 77 55 chr4 5032495 5032678 -197295669 - LTR41 LTR ERVL -586 187 1 2175 125 0 0 chr4 5032705 5033000 -197295347 - AluSx SINE Alu -17 295 1 536 362 119 21 chr4 5033001 5033581 -197294766 + L2 LINE L2 2229 2865 -449 255 284 91 26 chr4 5033697 5033833 -197294514 + L2 LINE L2 2871 3009 -263 2367 120 38 44 chr4 5033967 5034333 -197294014 - THE1B LTR MaLR 0 364 1 220 362 0 19 chr4 5034333 5034438 -197293909 + L2 LINE L2 3136 3238 -34 266 31 0 0 chr4 5034616 5034648 -197293699 - L1PB3 LINE L1 -2 6152 6121 674 92 0 0 chr4 5034648 5034735 -197293612 - MSTA LTR MaLR 0 428 342 2140 125 117 6 chr4 5034835 5035195 -197293152 - MSTA LTR MaLR -28 400 1 356 23 0 0 chr4 5035215 5035259 -197293088 + MADE1 DNA Mariner 36 79 -1 290 54 0 143 chr4 5035269 5035325 -197293022 - MADE1 DNA Mariner -32 48 1 1599 149 32 0 chr4 5035325 5035574 -197292773 - L1PB3 LINE L1 -58 6096 5840 221 312 37 18 chr4 5035576 5035685 -197292662 - MIR SINE MIR -73 189 79 580 203 63 76 chr4 5035744 5035981 -197292366 + MER113 DNA MER1_type? 6 239 -282 546 191 8 63 chr4 5036002 5036128 -197292219 - L1MA9 LINE L1 -115 6197 6079 842 93 0 0 chr4 5036321 5036429 -197291918 - AluY SINE Alu -5 306 199 1091 213 30 0 chr4 5036641 5036876 -197291471 + MIR SINE MIR 6 247 -15 572 296 47 24 chr4 5036914 5037127 -197291220 + MIR SINE MIR 16 233 -29 589 258 76 15 chr4 5037638 5037836 -197290511 + MLT1B LTR MaLR 6 215 -175 * 1192 275 120 14 chr4 5037809 5038242 -197290105 - MER45B DNA AcHobo -560 480 2 229 315 91 50 chr4 5038568 5038787 -197289560 - L2 LINE L2 -337 2977 2750 221 344 131 0 chr4 5038877 5038999 -197289348 - L2 LINE L2 -3 3269 3132 1995 124 3 10 chr4 5039194 5039500 -197288847 + AluSq SINE Alu 1 304 -9 834 271 46 17 chr4 5039556 5040231 -197288116 - L1M4 LINE L1 -1338 4808 3921 203 347 59 59 chr4 5040267 5040486 -197287861 - MIR SINE MIR -35 227 9 225 222 69 42 chr4 5040654 5040726 -197287621 + MIR SINE MIR 108 181 -81 242 301 48 10 chr4 5040778 5040881 -197287466 - MLT1K LTR MaLR -3 585 479 839 318 59 3 chr4 5040985 5041306 -197287041 + LTR16C LTR ERVL 144 482 -9 304 203 0 0 chr4 5041323 5041382 -197286965 - MER96 DNA MER1_type? 0 175 117 267 258 2 28 chr4 5041902 5041980 -197286367 - MIR SINE MIR -54 154 78 1188 284 48 13 chr4 5043016 5043494 -197284853 + L1ME LINE L1 805 1299 -5231 1039 280 52 53 chr4 5043514 5044307 -197284040 + L1ME LINE L1 1676 2467 -4073 559 242 136 70 chr4 5044430 5045049 -197283298 + L2 LINE L2 2545 3206 -107 2326 131 18 15 chr4 5045055 5045391 -197282956 + MER1B DNA MER1_type 1 337 0 407 320 8 8 chr4 5045415 5045537 -197282810 + L2 LINE L2 3178 3299 -14 210 71 0 0 chr4 5045538 5045566 -197282781 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 1014 274 123 33 chr4 5045579 5046003 -197282344 - MLT1K LTR MaLR -114 474 13 240 349 151 18 chr4 5046055 5046221 -197282126 + L2 LINE L2 3083 3270 -2 769 259 61 64 chr4 5047307 5047620 -197280727 + MLT1I LTR MaLR 10 321 -88 1268 164 33 109 chr4 5047643 5047812 -197280535 - AluJb SINE Alu 0 312 132 241 26 26 26 chr4 5047812 5047851 -197280496 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1268 164 33 109 chr4 5047851 5047865 -197280482 - AluJb SINE Alu -180 132 119 2107 95 0 0 chr4 5047865 5048138 -197280209 - AluSx SINE Alu -39 273 1 1268 164 33 109 chr4 5048138 5048282 -197280065 - AluJb SINE Alu -193 119 9 448 171 13 0 chr4 5048283 5048359 -197279988 + MLT1I LTR MaLR 333 409 0 971 255 92 84 chr4 5048373 5049067 -197279280 - L1MEc LINE L1 -2070 4145 3439 2145 112 3 0 chr4 5049067 5049353 -197278994 - AluSp SINE Alu -26 287 1 971 255 92 84 chr4 5049353 5049679 -197278668 - L1MEc LINE L1 -2776 3439 3117 561 316 86 21 chr4 5049721 5050584 -197277763 - L1MEc LINE L1 -4639 1757 839 303 293 121 57 chr4 5051009 5051166 -197277181 - L1MEc LINE L1 -5901 304 138 236 345 85 20 chr4 5051213 5051413 -197276934 + L2 LINE L2 1707 1919 -1395 1145 83 0 13 chr4 5051587 5051764 -197276583 - AluY SINE Alu 0 306 132 810 161 8 0 chr4 5051864 5051994 -197276353 - AluJo SINE Alu -177 135 5 374 259 46 8 chr4 5051999 5052130 -197276217 - MER103 DNA DNA -24 142 7 258 269 45 0 chr4 5052922 5052989 -197275358 - L2 LINE L2 -3 3310 3241 610 313 28 14 chr4 5053017 5053228 -197275119 - MIR SINE MIR -7 255 42 2219 74 0 14 chr4 5054252 5054549 -197273798 + AluY SINE Alu 1 293 -18 494 310 105 0 chr4 5054831 5055002 -197273345 + MIR SINE MIR 2 190 -72 383 223 106 11 chr4 5055205 5055299 -197273048 + L2 LINE L2 3210 3312 -1 554 306 19 0 chr4 5055379 5055539 -197272808 + MIR SINE MIR 96 258 -4 379 273 11 0 chr4 5055820 5055908 -197272439 - L2 LINE L2 0 3272 3184 4998 159 39 5 chr4 5055908 5056764 -197271583 + L1MC1 LINE L1 5415 6299 -34 1597 72 0 10 chr4 5056779 5056986 -197271361 - L1PA6 LINE L1 -1 6153 5949 375 289 90 74 chr4 5057020 5057397 -197270950 - L2 LINE L2 -78 3235 2853 448 200 90 44 chr4 5058020 5058172 -197270175 - MER63A DNA MER1_type 0 210 50 295 146 0 0 chr4 5058223 5058264 -197270083 - MER63A DNA MER1_type -169 41 1 389 338 46 0 chr4 5058265 5058416 -197269931 + MIR SINE MIR 53 210 -52 211 280 187 9 chr4 5059299 5059406 -197268941 + L2 LINE L2 3121 3246 -26 205 384 59 27 chr4 5059438 5059657 -197268690 - L2 LINE L2 -53 3219 2994 * 453 309 8 8 chr4 5059628 5059751 -197268596 + L2 LINE L2 3150 3272 0 390 325 69 46 chr4 5059756 5060155 -197268192 - L2 LINE L2 -262 3010 2595 1809 171 53 13 chr4 5060720 5061100 -197267247 - L1MA9 LINE L1 0 6312 5918 325 310 8 23 chr4 5061506 5061635 -197266712 - MIR SINE MIR -62 146 20 349 268 109 91 chr4 5062189 5062454 -197265893 + L2 LINE L2 3036 3305 -8 196 291 89 0 chr4 5062537 5062616 -197265731 + L2 LINE L2 3137 3222 -50 2529 125 48 17 chr4 5062782 5063197 -197265150 - MSTA LTR MaLR 0 428 1 637 144 0 65 chr4 5063207 5063346 -197265001 - FRAM SINE Alu -4 172 43 1948 122 7 0 chr4 5063560 5063846 -197264501 + AluSx SINE Alu 1 288 -24 910 284 107 3 chr4 5063943 5064298 -197264049 + MER113 DNA MER1_type? 20 411 -110 238 182 0 23 chr4 5064432 5064476 -197263871 + CT-rich Low_complexity Low_complexity 3 45 0 225 0 0 0 chr4 5064484 5064509 -197263838 + (T)n Simple_repeat Simple_repeat 1 25 0 2061 106 0 0 chr4 5064590 5064914 -197263433 + AluSg SINE Alu 1 324 0 228 217 51 0 chr4 5065234 5065301 -197263046 - Charlie8 DNA MER1_type -2 2415 1345 254 328 38 15 chr4 5065592 5065723 -197262624 + L2 LINE L2 3075 3208 -105 320 263 41 36 chr4 5065880 5066074 -197262273 - L1M4 LINE L1 -2164 3982 3788 256 283 157 18 chr4 5066335 5066501 -197261846 - L1ME LINE L1 -438 5683 5495 283 149 15 60 chr4 5067169 5067207 -197261140 - Tigger3(Golem) DNA MER2_type -138 2891 2856 2830 3 0 0 chr4 5067207 5067519 -197260828 + AluYb8 SINE Alu 1 312 -6 283 149 15 60 chr4 5067519 5067547 -197260800 - Tigger3(Golem) DNA MER2_type -173 2856 2828 447 228 33 0 chr4 5068122 5068214 -197260133 - MLT1J LTR MaLR -321 190 96 273 284 0 14 chr4 5068226 5068300 -197260047 + L2 LINE L2 3200 3272 0 244 309 128 0 chr4 5068391 5068485 -197259862 - MIR SINE MIR -3 259 154 1570 266 93 70 chr4 5068537 5069010 -197259337 + L2 LINE L2 2061 2522 -791 1578 181 3 19 chr4 5069010 5069320 -197259027 + AluJb SINE Alu 5 309 -3 1570 266 93 70 chr4 5069320 5069831 -197258516 + L2 LINE L2 2522 3066 -247 3510 111 14 2 chr4 5069831 5070338 -197258009 - L1PA8A LINE L1 -1530 4616 4104 6487 88 2 2 chr4 5070351 5071860 -197256487 + L1PA8A LINE L1 4596 6130 -1 237 310 14 0 chr4 5071961 5072032 -197256315 - L2 LINE L2 0 3313 3242 768 198 213 55 chr4 5072156 5072504 -197255843 + MLT1C LTR MaLR 7 409 -58 2032 114 19 13 chr4 5072504 5072679 -197255668 - AluSx SINE Alu -3 309 130 2058 113 17 3 chr4 5072679 5072979 -197255368 - AluSq SINE Alu -9 304 1 2032 114 19 13 chr4 5072979 5073110 -197255237 - AluSx SINE Alu -182 130 1 462 256 125 30 chr4 5073115 5073283 -197255064 + MIR SINE MIR 48 231 -31 1144 97 0 0 chr4 5073571 5073725 -197254622 - AluSg/x SINE Alu -4 306 153 2109 85 64 5 chr4 5073736 5074097 -197254250 - LTR7 LTR ERV1 0 450 25 1037 139 6 6 chr4 5074097 5074269 -197254078 - AluSq SINE Alu -141 172 1 490 264 35 39 chr4 5074282 5074466 -197253881 - MIR SINE MIR -72 136 3 419 229 50 57 chr4 5074564 5074704 -197253643 - MIR SINE MIR -10 252 114 252 0 0 0 chr4 5074794 5074822 -197253525 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 270 193 72 48 chr4 5075305 5075388 -197252959 + MIR3 SINE MIR 87 171 -37 204 330 0 10 chr4 5075788 5075885 -197252462 + CT-rich Low_complexity Low_complexity 1 96 0 392 243 14 62 chr4 5076971 5077115 -197251232 + MIR SINE MIR 80 216 -46 195 293 98 9 chr4 5077219 5077407 -197250940 - MIR SINE MIR -2 260 12 2116 79 14 0 chr4 5078083 5078398 -197249949 + AluSq SINE Alu 1 319 0 350 330 75 74 chr4 5078524 5079078 -197249269 - L2 LINE L2 0 3272 2715 412 209 9 43 chr4 5079301 5079416 -197248931 + HsTC2 DNA Tc2 1783 1893 -5 653 264 22 33 chr4 5079888 5080070 -197248277 - MIR SINE MIR -48 214 35 185 194 0 0 chr4 5080153 5080189 -197248158 - L2 LINE L2 -16 3256 3221 438 265 75 90 chr4 5080261 5080593 -197247754 - MLT1J LTR MaLR -75 436 110 543 232 113 33 chr4 5080625 5080776 -197247571 + MER5A DNA MER1_type 1 163 -26 446 255 47 0 chr4 5081200 5081306 -197247041 + MER81 DNA DNA 2 112 -2 401 277 37 28 chr4 5082215 5082412 -197245935 - MIR SINE MIR -6 256 18 269 295 13 26 chr4 5083129 5083207 -197245140 - L2 LINE L2 0 3272 3196 455 294 88 44 chr4 5083213 5083485 -197244862 - L2 LINE L2 0 3313 3030 374 275 181 28 chr4 5083564 5083917 -197244430 - L2 LINE L2 -462 2852 2446 191 188 0 0 chr4 5085202 5085234 -197243113 - MIR SINE MIR -107 155 124 776 153 11 17 chr4 5085373 5085550 -197242797 + GA-rich Low_complexity Low_complexity 3 178 0 290 203 16 0 chr4 5085734 5085798 -197242549 + MIR SINE MIR 61 125 -137 402 268 109 55 chr4 5085798 5086018 -197242329 + Charlie8 DNA MER1_type 1 232 -2185 226 383 9 9 chr4 5086167 5086282 -197242065 + L2 LINE L2 2946 3060 -212 185 150 0 25 chr4 5086389 5086429 -197241918 + (CA)n Simple_repeat Simple_repeat 2 40 0 1753 179 152 29 chr4 5086498 5086946 -197241401 + MLT1D LTR MaLR 1 503 -2 353 282 52 69 chr4 5087147 5087321 -197241026 + MIR SINE MIR 20 190 -72 1040 270 72 17 chr4 5087631 5088076 -197240271 + MLT1H LTR MaLR 28 549 0 587 278 139 10 chr4 5088775 5088984 -197239363 + MIR SINE MIR 20 255 -7 22 0 0 0 chr4 5089532 5089554 -197238793 + AT_rich Low_complexity Low_complexity 1 22 0 269 224 37 82 chr4 5089764 5089898 -197238449 - L1ME4a LINE L1 -21 6100 5973 241 349 9 0 chr4 5090113 5090219 -197238128 + L2 LINE L2 3206 3312 -1 1890 150 0 0 chr4 5090242 5090529 -197237818 - AluSx SINE Alu -25 287 1 285 318 56 24 chr4 5090826 5090952 -197237395 + L2 LINE L2 3142 3271 -1 1331 126 0 11 chr4 5091011 5091202 -197237145 - Tigger2 DNA MER2_type -1 2717 2529 1562 181 0 7 chr4 5091210 5091486 -197236861 - AluJo SINE Alu -33 279 6 3414 128 65 5 chr4 5091489 5092043 -197236304 - Tigger2 DNA MER2_type -1572 1146 560 821 206 16 27 chr4 5092159 5092343 -197236004 + MLT1C LTR MaLR 286 467 0 286 313 52 10 chr4 5092373 5092469 -197235878 - MIR3 SINE MIR 0 208 109 206 289 52 41 chr4 5092884 5092981 -197235366 - L3 LINE CR1 -1471 106 9 290 256 35 0 chr4 5093172 5093258 -197235089 + MLT1K LTR MaLR 153 241 -347 1814 234 48 87 chr4 5093447 5094070 -197234277 + L1ME3A LINE L1 5546 6144 -26 313 318 129 30 chr4 5094097 5094330 -197234017 + L3 LINE CR1 1191 1446 -131 711 299 45 9 chr4 5094933 5095157 -197233190 - MIR SINE MIR -29 233 2 297 311 112 13 chr4 5095205 5095356 -197232991 - MIR SINE MIR -52 156 14 273 311 46 48 chr4 5095602 5095768 -197232579 + MIR SINE MIR 49 216 -46 458 202 67 29 chr4 5095904 5096008 -197232339 - L2 LINE L2 -8 3305 3198 342 269 175 29 chr4 5096065 5096236 -197232111 - MIR SINE MIR -14 248 53 213 225 14 28 chr4 5096363 5096434 -197231913 + (CAGGT)n Simple_repeat Simple_repeat 5 74 0 537 265 25 15 chr4 5097435 5097635 -197230712 + L1ME2 LINE L1 2141 2342 -3804 3518 250 57 24 chr4 5097695 5100078 -197228269 + L1ME2 LINE L1 2271 4880 -1266 1660 209 37 92 chr4 5100079 5100653 -197227694 + MLT2B3 LTR ERVL 1 542 -12 676 220 81 52 chr4 5100719 5101101 -197227246 + L1ME2 LINE L1 4942 5334 -812 781 223 53 75 chr4 5101102 5101421 -197226926 + L1ME2 LINE L1 5843 6154 -10 362 329 56 31 chr4 5101780 5101941 -197226406 + L2 LINE L2 3086 3250 -22 459 52 0 0 chr4 5101944 5102002 -197226345 + (TGGA)n Simple_repeat Simple_repeat 1 58 0 407 288 72 0 chr4 5102403 5102542 -197225805 - MIR SINE MIR -3 259 111 2183 178 17 19 chr4 5103583 5103627 -197224720 - MLT2D LTR ERVL 0 414 371 417 81 0 0 chr4 5103627 5103689 -197224658 + (CAGA)n Simple_repeat Simple_repeat 3 64 0 2183 178 17 19 chr4 5103689 5104059 -197224288 - MLT2D LTR ERVL -43 371 1 304 317 28 7 chr4 5104865 5105010 -197223337 + MLT1L LTR MaLR 338 485 -130 951 275 116 40 chr4 5105049 5105529 -197222818 + L2 LINE L2 2516 3074 -239 1040 164 19 14 chr4 5105529 5105736 -197222611 + MER3 DNA MER1_type 2 209 0 951 275 116 40 chr4 5105736 5105996 -197222351 + L2 LINE L2 3074 3313 0 458 316 80 30 chr4 5107146 5107383 -197220964 + L2 LINE L2 2243 2491 -823 1218 275 92 49 chr4 5107538 5109113 -197219234 - L1MEc LINE L1 -3372 2708 1001 225 94 0 0 chr4 5109113 5109145 -197219202 + (TG)n Simple_repeat Simple_repeat 1 32 0 1218 275 92 49 chr4 5109145 5109512 -197218835 - L1MEc LINE L1 -5079 1001 651 252 235 0 0 chr4 5109618 5109686 -197218661 - L1MEc LINE L1 -5162 908 841 273 273 0 122 chr4 5109860 5110032 -197218315 - L1MEc LINE L1 -5551 519 369 353 217 11 11 chr4 5110823 5110915 -197217432 - MLT1G LTR MaLR 0 590 499 373 295 30 42 chr4 5111215 5111452 -197216895 - L1ME LINE L1 -298 5823 5590 327 323 24 8 chr4 5111995 5112119 -197216228 + L2 LINE L2 3187 3312 -1 231 323 32 0 chr4 5112361 5112454 -197215893 - MER117 DNA MER1_type -87 110 15 927 286 78 30 chr4 5112772 5113234 -197215113 - MLT1L LTR MaLR -9 606 123 431 304 46 11 chr4 5114078 5114341 -197214006 - L1ME LINE L1 -301 5820 5549 1259 180 0 86 chr4 5114648 5114975 -197213372 - L1MA9 LINE L1 -277 6035 5737 * 3300 250 62 34 chr4 5114974 5116240 -197212107 - L1M2 LINE L1 -4469 1742 456 609 278 140 36 chr4 5116425 5116903 -197211444 - L1ME4a LINE L1 -1 6120 5593 391 289 71 47 chr4 5117088 5117299 -197211048 + MIR SINE MIR 35 250 -12 1973 149 3 3 chr4 5117471 5117767 -197210580 - AluSx SINE Alu -16 296 1 470 260 133 17 chr4 5118047 5118228 -197210119 + MIR SINE MIR 47 248 -14 205 176 0 0 chr4 5118328 5118362 -197209985 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 253 331 99 8 chr4 5118579 5118700 -197209647 + L2 LINE L2 3171 3302 -11 375 273 123 68 chr4 5118888 5119181 -197209166 + LTR16A1 LTR ERVL 147 455 -2 276 300 0 0 chr4 5119322 5119402 -197208945 - MIR SINE MIR -70 138 59 225 19 0 113 chr4 5119420 5119473 -197208874 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 2249 126 0 0 chr4 5119479 5119788 -197208559 - AluSg SINE Alu 0 310 2 2246 181 22 84 chr4 5119893 5120440 -197207907 + MLT2B2 LTR ERVL 3 515 0 261 0 0 0 chr4 5120725 5120754 -197207593 + (TG)n Simple_repeat Simple_repeat 1 29 0 640 290 6 0 chr4 5122021 5122197 -197206150 + MER58A DNA MER1_type 3 179 -45 2488 113 5 24 chr4 5122242 5122613 -197205734 + THE1B LTR MaLR 1 364 0 597 178 0 52 chr4 5123014 5123149 -197205198 - MLT1I LTR MaLR -2 407 280 303 325 180 0 chr4 5123448 5123642 -197204705 - MIR SINE MIR -13 249 21 1836 193 0 7 chr4 5124240 5124545 -197203802 - AluJo SINE Alu -9 303 1 336 161 0 0 chr4 5125225 5125287 -197203060 + CT-rich Low_complexity Low_complexity 6 67 0 243 313 87 35 chr4 5125585 5125700 -197202647 + L2 LINE L2 3127 3247 -25 417 224 9 19 chr4 5125819 5125926 -197202421 - AluJb SINE Alu -14 298 193 372 252 57 32 chr4 5126039 5126162 -197202185 + L2 LINE L2 2622 2747 -567 409 281 104 48 chr4 5126550 5126804 -197201543 - L1M4 LINE L1 -918 5228 4990 2237 115 131 11 chr4 5126804 5127186 -197201161 + MSTA LTR MaLR 1 428 0 409 281 104 48 chr4 5127186 5127394 -197200953 - L1M4 LINE L1 -1156 4990 4740 335 298 63 99 chr4 5128507 5128809 -197199538 - L3 LINE CR1 -2 1575 1285 1012 191 5 11 chr4 5128842 5129031 -197199316 - MER5A DNA MER1_type -1 188 1 330 300 67 110 chr4 5129060 5129477 -197198870 - L2 LINE L2 -39 3233 2835 470 274 20 13 chr4 5130868 5131021 -197197326 - MLT1I LTR MaLR -399 156 3 243 250 0 0 chr4 5131023 5131075 -197197272 - L2 LINE L2 -599 2715 2664 287 348 129 0 chr4 5131190 5131391 -197196956 - L2 LINE L2 -608 2706 2480 201 292 135 0 chr4 5132429 5132518 -197195829 - MIR SINE MIR -141 121 21 483 339 81 30 chr4 5133143 5133441 -197194906 - L2 LINE L2 0 3272 2960 359 331 140 29 chr4 5133477 5133755 -197194592 - L2 LINE L2 -450 2864 2556 923 212 33 113 chr4 5134518 5134560 -197193787 + MLT1A1 LTR MaLR 1 45 -320 1724 111 0 0 chr4 5134560 5134785 -197193562 + AluSc SINE Alu 77 301 -8 923 212 33 113 chr4 5134785 5135139 -197193208 + MLT1A1 LTR MaLR 45 365 0 6880 209 65 35 chr4 5135139 5136440 -197191907 + MLT1A1-int LTR MaLR 1 1365 -370 2480 69 0 13 chr4 5136440 5136744 -197191603 + AluY SINE Alu 1 300 -11 6880 209 65 35 chr4 5136744 5137127 -197191220 + MLT1A1-int LTR MaLR 1365 1735 0 254 297 79 10 chr4 5137738 5137839 -197190508 + MIR SINE MIR 150 257 -5 435 228 24 0 chr4 5137922 5138045 -197190302 - Charlie1 DNA MER1_type 0 2761 2636 1974 115 44 0 chr4 5138045 5138342 -197190005 + AluSx SINE Alu 1 309 0 349 186 0 0 chr4 5138396 5138455 -197189892 + MER44D DNA MER2_type 2 60 -645 2481 196 24 29 chr4 5139257 5139809 -197188538 + MER44D DNA MER2_type 2 605 0 3756 275 119 22 chr4 5139816 5141334 -197187013 - Charlie1 DNA MER1_type -180 2581 917 1117 114 14 55 chr4 5141342 5141451 -197186896 - Tigger1 DNA MER2_type -8 2410 2313 2121 125 3 0 chr4 5141451 5141747 -197186600 + AluSq SINE Alu 1 297 -16 1117 114 14 55 chr4 5141747 5141857 -197186490 - Tigger1 DNA MER2_type -105 2313 2200 584 211 0 32 chr4 5141853 5141976 -197186371 - Tigger1 DNA MER2_type -2279 139 21 * 1801 212 76 58 chr4 5141973 5142066 -197186281 - Charlie1 DNA MER1_type -1832 929 839 616 157 20 0 chr4 5142066 5142168 -197186179 + L1PB4 LINE L1 6041 6144 -12 1801 212 76 58 chr4 5142168 5142749 -197185598 - Charlie1 DNA MER1_type -1922 839 243 831 151 0 22 chr4 5142749 5142888 -197185459 - AluSp/q SINE Alu -4 309 174 724 229 82 26 chr4 5142888 5142944 -197185403 - Charlie1 DNA MER1_type -2509 252 201 2317 113 3 0 chr4 5142944 5143255 -197185092 - AluSx SINE Alu 0 312 1 724 229 82 26 chr4 5143255 5143429 -197184918 - Charlie1 DNA MER1_type -2560 201 9 243 232 219 66 chr4 5143920 5144071 -197184276 + L2 LINE L2 3099 3272 0 2057 142 0 13 chr4 5144095 5144411 -197183936 + AluSx SINE Alu 1 312 0 435 273 8 0 chr4 5144743 5144864 -197183483 - L2 LINE L2 -1 3271 3150 1100 216 117 40 chr4 5144884 5145337 -197183010 - Charlie4a DNA MER1_type -20 488 1 324 284 12 12 chr4 5145631 5145793 -197182554 + L1ME4a LINE L1 5705 5866 -255 24 0 0 0 chr4 5146047 5146071 -197182276 + AT_rich Low_complexity Low_complexity 1 24 0 350 345 152 0 chr4 5146398 5146589 -197181758 + MIR SINE MIR 15 234 -28 334 184 102 20 chr4 5146639 5146737 -197181610 - MER103 DNA DNA -56 110 5 2938 240 83 20 chr4 5146881 5147709 -197180638 + L1MB7 LINE L1 8 887 -5655 * 3149 230 64 18 chr4 5147699 5149540 -197178807 + L1MB7 LINE L1 1439 3477 -3167 1222 91 22 4 chr4 5149537 5149809 -197178538 + L1MA2 LINE L1 5909 6224 -80 * 1523 116 13 0 chr4 5149809 5150042 -197178305 + L1MA2 LINE L1 6069 6304 0 2243 252 18 31 chr4 5150049 5150490 -197177857 + L1MB7 LINE L1 3461 3891 -2753 6307 71 8 21 chr4 5150490 5151651 -197176696 - L1PA8A LINE L1 0 6131 5007 2311 86 41 0 chr4 5151651 5151943 -197176404 - AluY SINE Alu -7 304 1 6307 71 8 21 chr4 5151943 5152156 -197176191 - L1PA8A LINE L1 -1124 5007 4793 2243 252 18 31 chr4 5152156 5152433 -197175914 + L1MB7 LINE L1 3891 4170 -2474 3735 184 47 34 chr4 5152439 5153488 -197174859 + L1MB7 LINE L1 5575 6631 -51 1353 163 50 48 chr4 5153488 5153529 -197174818 - MSTA LTR MaLR 0 364 325 2309 99 0 10 chr4 5153529 5153841 -197174506 + AluSx SINE Alu 1 309 -3 1353 163 50 48 chr4 5153841 5154171 -197174176 - MSTA LTR MaLR -39 325 1 2587 142 36 11 chr4 5154277 5154722 -197173625 + Tigger2 DNA MER2_type 3 458 -2260 881 19 9 0 chr4 5154722 5154828 -197173519 + L1PA4 LINE L1 5872 5978 -177 759 189 0 0 chr4 5155229 5155445 -197172902 + (CTCA)n Simple_repeat Simple_repeat 1 216 0 858 175 0 0 chr4 5155451 5155628 -197172719 + (TTCA)n Simple_repeat Simple_repeat 3 179 0 879 189 0 8 chr4 5155636 5155901 -197172446 + (CTCA)n Simple_repeat Simple_repeat 1 262 0 2086 170 18 5 chr4 5156655 5157038 -197171309 - MLT1B LTR MaLR -2 388 1 183 80 0 0 chr4 5157047 5157072 -197171275 + (CCA)n Simple_repeat Simple_repeat 1 25 0 254 228 0 76 chr4 5157123 5157215 -197171132 - MIR SINE MIR -14 248 164 191 235 0 29 chr4 5157876 5157944 -197170403 + (TATG)n Simple_repeat Simple_repeat 1 66 0 1483 246 46 7 chr4 5158122 5158555 -197169792 + MLT1E2 LTR MaLR 138 626 0 848 279 66 0 chr4 5159152 5159424 -197168923 - L1M4 LINE L1 -1186 4960 4671 211 304 0 0 chr4 5159471 5159527 -197168820 + CT-rich Low_complexity Low_complexity 2 57 0 1438 230 68 20 chr4 5160735 5160941 -197167406 + MLT1C LTR MaLR 53 248 -219 2796 94 3 0 chr4 5160941 5161304 -197167043 + THE1B LTR MaLR 1 364 0 1438 230 68 20 chr4 5161304 5161493 -197166854 + MLT1C LTR MaLR 248 467 0 21 0 0 0 chr4 5162429 5162450 -197165897 + AT_rich Low_complexity Low_complexity 1 21 0 210 232 54 0 chr4 5162896 5162952 -197165395 - MIR SINE MIR -75 187 129 960 261 54 51 chr4 5163086 5163643 -197164704 - L2 LINE L2 -5 3308 2739 672 315 25 36 chr4 5164631 5165023 -197163324 + L2 LINE L2 2703 3091 -222 753 214 60 11 chr4 5165045 5165227 -197163120 + MLT1D LTR MaLR 1 191 -314 1708 117 29 4 chr4 5165227 5165501 -197162846 - L1PA15 LINE L1 -261 5904 5624 1152 150 117 0 chr4 5165481 5165694 -197162653 + L1PA15 LINE L1 5917 6154 -11 * 969 210 210 4 chr4 5165694 5165966 -197162381 + MLT1D LTR MaLR 178 505 0 315 102 0 85 chr4 5165999 5166058 -197162289 - Alu SINE Alu -6 295 242 256 289 0 0 chr4 5166285 5166361 -197161986 + MLT1C LTR MaLR 392 467 0 268 341 44 22 chr4 5166367 5166394 -197161953 + L2 LINE L2 3113 3138 -175 2089 127 3 17 chr4 5166394 5166694 -197161653 - AluSx SINE Alu -16 296 1 268 341 44 22 chr4 5166694 5166848 -197161499 + L2 LINE L2 3138 3298 -15 257 208 0 0 chr4 5167291 5167359 -197160988 - MIR SINE MIR -63 145 77 194 323 50 20 chr4 5167461 5167560 -197160787 - MIR SINE MIR -109 153 52 270 282 26 0 chr4 5167671 5167749 -197160598 - MER102b DNA MER1_type -13 328 249 2086 174 50 21 chr4 5167804 5168183 -197160164 + MSTD LTR MaLR 7 396 0 427 278 67 51 chr4 5168553 5168866 -197159481 + L2 LINE L2 2940 3257 -56 284 295 11 11 chr4 5168875 5168970 -197159377 + (CATATA)n Simple_repeat Simple_repeat 5 99 0 2007 106 81 34 chr4 5168984 5169341 -197159006 + THE1C LTR MaLR 2 375 0 280 199 18 41 chr4 5169382 5169553 -197158794 + (CATATA)n Simple_repeat Simple_repeat 2 168 0 229 220 0 0 chr4 5169561 5169611 -197158736 - L1MC4 LINE L1 -1341 6701 6652 290 209 18 45 chr4 5169646 5169778 -197158569 + (CATATA)n Simple_repeat Simple_repeat 1 128 0 189 0 0 0 chr4 5170749 5170770 -197157577 + (A)n Simple_repeat Simple_repeat 1 21 0 448 270 101 64 chr4 5170775 5171071 -197157276 - L2 LINE L2 -88 3225 2919 223 218 55 0 chr4 5171101 5171156 -197157191 + L2 LINE L2 3201 3258 -14 229 234 172 0 chr4 5171234 5171298 -197157049 + MIR SINE MIR 48 122 -140 2128 151 29 0 chr4 5172027 5172405 -197155942 - MLT1B LTR MaLR -1 389 1 283 169 0 34 chr4 5172853 5172912 -197155435 - MLT2D LTR ERVL 0 520 464 229 150 0 0 chr4 5172891 5172931 -197155416 + LTR66 LTR ERVL 396 435 -175 * 320 253 38 0 chr4 5172932 5173011 -197155336 + L1MC4 LINE L1 6613 6694 -1348 342 242 0 42 chr4 5173015 5173110 -197155237 + L1MC4 LINE L1 6613 6703 -1339 315 269 0 21 chr4 5173113 5173206 -197155141 + L1MC4 LINE L1 6613 6703 -1339 216 185 0 0 chr4 5173208 5173262 -197155085 + (TATATG)n Simple_repeat Simple_repeat 6 59 0 1292 235 34 6 chr4 5173294 5173617 -197154730 - MLT2D LTR ERVL -82 332 1 277 266 0 0 chr4 5173757 5173821 -197154526 - MIR SINE MIR -80 182 119 416 305 134 21 chr4 5174094 5174422 -197153925 - L2 LINE L2 0 3313 2949 222 313 16 0 chr4 5174566 5174630 -197153717 + L2 LINE L2 3203 3267 -5 367 269 60 15 chr4 5174741 5174875 -197153472 - MLT1L LTR MaLR 0 615 476 262 252 33 105 chr4 5174865 5175073 -197153274 - MLT1J LTR MaLR -185 391 212 * 387 0 0 0 chr4 5176988 5177031 -197151316 + (TG)n Simple_repeat Simple_repeat 2 44 0 1406 221 30 29 chr4 5177561 5177936 -197150411 - MLT1C LTR MaLR -22 604 69 692 251 16 5 chr4 5177936 5178123 -197150224 - MLT1A2 LTR MaLR 0 374 186 251 227 120 0 chr4 5178136 5178211 -197150136 - MIR SINE MIR -129 133 50 263 270 81 18 chr4 5178406 5178517 -197149830 - MIR3 SINE MIR -76 132 15 254 173 0 19 chr4 5179757 5179809 -197148538 + MIR SINE MIR 106 156 -106 1536 244 73 5 chr4 5179996 5180406 -197147941 + MLT1C LTR MaLR 21 458 -9 276 304 144 31 chr4 5180834 5181028 -197147319 + MIR SINE MIR 31 246 -16 936 288 104 18 chr4 5181086 5181538 -197146809 - LTR16C LTR ERVL 0 491 1 301 303 42 48 chr4 5181556 5181721 -197146626 + L2 LINE L2 3109 3272 0 225 244 0 0 chr4 5182878 5182923 -197145424 + L2 LINE L2 3213 3257 -15 448 259 85 80 chr4 5183397 5183795 -197144552 - L1ME4a LINE L1 -45 6076 5677 43999 45 3 0 chr4 5183918 5190045 -197138302 - L1PA4 LINE L1 0 6155 15 2229 141 0 0 chr4 5190048 5190353 -197137994 - AluSq SINE Alu -8 305 1 255 241 45 54 chr4 5190525 5190637 -197137710 + MIR SINE MIR 81 191 -71 2100 144 32 29 chr4 5190710 5191084 -197137263 - THE1C LTR MaLR 0 375 1 10256 126 37 3 chr4 5191084 5192612 -197135735 - THE1C-int LTR MaLR 0 1580 1 2178 123 24 39 chr4 5192612 5192993 -197135354 - THE1C LTR MaLR 0 375 1 1110 123 10 62 chr4 5193137 5193270 -197135077 - Tigger1 DNA MER2_type -1236 1182 1061 2256 105 3 13 chr4 5193270 5193585 -197134762 + AluSp SINE Alu 1 312 -1 1110 123 10 62 chr4 5193585 5193646 -197134701 - Tigger1 DNA MER2_type -1357 1061 998 448 161 62 0 chr4 5193653 5193734 -197134613 - Tigger1 DNA MER2_type -2062 356 271 4937 147 6 5 chr4 5193735 5194515 -197133832 - Tigger1 DNA MER2_type -1422 996 216 388 108 82 13 chr4 5194658 5194816 -197133531 + (TAGA)n Simple_repeat Simple_repeat 4 172 0 246 279 105 0 chr4 5194898 5194984 -197133363 - MLT1K LTR MaLR -7 581 487 253 247 155 0 chr4 5195018 5195115 -197133232 - MLT1K LTR MaLR -181 407 296 267 295 29 79 chr4 5195134 5195273 -197133074 - MLT1K LTR MaLR -413 175 44 258 230 300 0 chr4 5195572 5195672 -197132675 - MIR SINE MIR -105 157 28 729 261 148 27 chr4 5196336 5196519 -197131828 + MLT1A2 LTR MaLR 1 160 -214 351 0 0 0 chr4 5196519 5196558 -197131789 + (CA)n Simple_repeat Simple_repeat 2 40 0 729 261 148 27 chr4 5196558 5196704 -197131643 + MLT1A2 LTR MaLR 160 370 -4 7257 128 34 16 chr4 5196731 5197641 -197130706 - Tigger1 DNA MER2_type 0 2418 1481 2375 95 10 0 chr4 5197641 5197947 -197130400 - AluSx SINE Alu -3 309 1 7257 128 34 16 chr4 5197947 5198200 -197130147 - Tigger1 DNA MER2_type -937 1481 1234 3282 107 32 6 chr4 5198392 5198858 -197129489 + MER1A DNA MER1_type 52 529 0 529 266 101 35 chr4 5198904 5199261 -197129086 - L1MC4a LINE L1 -621 7234 6884 1159 282 112 22 chr4 5199271 5199824 -197128523 - L1ME3A LINE L1 -4 6166 5564 463 291 89 24 chr4 5199809 5200056 -197128291 - L1ME3A LINE L1 -2448 3698 3436 * 217 325 26 26 chr4 5200543 5200660 -197127687 - MIR3 SINE MIR -2 206 90 186 103 0 0 chr4 5200666 5200695 -197127652 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 6575 197 25 20 chr4 5200866 5203152 -197125195 + L1PB4 LINE L1 3861 6156 0 1350 279 78 0 chr4 5203181 5203564 -197124783 - LTR16C LTR ERVL 0 491 79 1407 235 118 30 chr4 5203622 5204095 -197124252 - MLT2B2 LTR ERVL 0 515 1 280 277 204 0 chr4 5204267 5204404 -197123943 - L2 LINE L2 0 3313 3149 557 238 47 29 chr4 5204408 5204439 -197123908 + MLT1I LTR MaLR 232 261 -148 2406 164 6 6 chr4 5204439 5204804 -197123543 + MLT1A1 LTR MaLR 1 365 0 557 238 47 29 chr4 5204804 5204944 -197123403 + MLT1I LTR MaLR 261 406 -3 535 279 99 97 chr4 5205004 5205111 -197123236 + L2 LINE L2 2723 2828 -444 2462 104 16 65 chr4 5205111 5205494 -197122853 - THE1B LTR MaLR 0 364 1 535 279 99 97 chr4 5205494 5205943 -197122404 + L2 LINE L2 2828 3272 0 280 241 71 36 chr4 5207245 5207357 -197120990 + MIR SINE MIR 74 189 -73 201 74 0 0 chr4 5207563 5207590 -197120757 + (CA)n Simple_repeat Simple_repeat 1 27 0 717 199 7 21 chr4 5207617 5207758 -197120589 + MER45 DNA AcHobo 1 139 -1442 629 170 54 34 chr4 5207760 5207907 -197120440 - L1MA8 LINE L1 -14 6277 6128 4733 161 20 15 chr4 5207907 5208794 -197119553 - L1 LINE L1 -1379 4767 3876 295 259 64 59 chr4 5208813 5209033 -197119314 - L1MC/D LINE L1 -2332 5476 5256 3155 180 3 7 chr4 5209192 5209787 -197118560 - L1 LINE L1 -2249 3897 3305 443 318 74 52 chr4 5209787 5210193 -197118154 + L2 LINE L2 2876 3290 -23 690 176 6 80 chr4 5210310 5210486 -197117861 - MER106B DNA MER1_type -1 1058 896 200 347 68 32 chr4 5212133 5212323 -197116024 + L2 LINE L2 2862 3058 -214 281 266 145 24 chr4 5212522 5212646 -197115701 + MIR SINE MIR 40 178 -84 200 233 0 0 chr4 5212796 5212839 -197115508 + T-rich Low_complexity Low_complexity 1 43 0 331 316 66 15 chr4 5213272 5213408 -197114939 - MER5B DNA MER1_type -31 147 5 1873 140 90 36 chr4 5214049 5214405 -197113942 - THE1C LTR MaLR 0 375 1 3398 117 21 46 chr4 5214405 5214967 -197113380 - THE1C-int LTR MaLR 0 1580 1033 2778 54 0 9 chr4 5264967 5265298 -197063049 + L1PA5 LINE L1 5824 6151 -3 1776 163 21 0 chr4 5265756 5266039 -197062308 - AluSx SINE Alu -23 289 1 26 64 0 0 chr4 5266101 5266148 -197062199 + AT_rich Low_complexity Low_complexity 1 47 0 552 311 77 30 chr4 5266239 5266799 -197061548 - L1ME4a LINE L1 -206 5915 5330 2708 23 0 3 chr4 5266934 5267243 -197061104 - L1PA4 LINE L1 -312 5843 5536 1823 36 22 0 chr4 5267243 5267466 -197060881 + L1P LINE L1 4986 5213 -933 2281 81 0 7 chr4 5268339 5268636 -197059711 - L1P2 LINE L1 -383 5771 5477 1417 94 0 0 chr4 5268638 5268819 -197059528 + L1PA5 LINE L1 5970 6150 -4 1518 119 16 67 chr4 5268819 5269072 -197059275 + MSTA LTR MaLR 189 428 0 304 264 114 21 chr4 5269392 5269532 -197058815 + MIR SINE MIR 61 213 -49 333 321 9 9 chr4 5269612 5269724 -197058623 + MIR SINE MIR 4 115 -147 9497 27 13 0 chr4 5269970 5271867 -197056480 - L1PA4 LINE L1 -5 6150 4234 5175 132 17 11 chr4 5272194 5272745 -197055602 - L1PA15 LINE L1 -2 6163 5604 2309 115 0 0 chr4 5272745 5273050 -197055297 - AluSx SINE Alu -7 305 1 5175 132 17 11 chr4 5273050 5273302 -197055045 - L1PA15 LINE L1 -561 5604 5355 1667 253 87 31 chr4 5273425 5274381 -197053966 - L1M1 LINE L1 -4148 3417 2423 1658 155 33 39 chr4 5274375 5274711 -197053636 + L1MA7 LINE L1 5780 6113 -178 * 3147 168 73 16 chr4 5274711 5275276 -197053071 + MER44D DNA MER2_type 3 599 -106 502 263 32 5 chr4 5275289 5275422 -197052925 - MER2 DNA MER2_type -87 152 8 602 164 29 10 chr4 5275430 5275534 -197052813 + Tigger7 DNA MER2_type 2381 2486 -1 874 154 51 0 chr4 5275543 5275699 -197052648 + L1MA7 LINE L1 6123 6286 -5 4351 173 23 34 chr4 5275972 5276902 -197051445 - L1P LINE L1 -829 5317 4399 440 145 12 24 chr4 5277865 5277948 -197050399 - THE1C LTR MaLR -293 82 1 278 307 79 11 chr4 5277949 5278138 -197050209 - MER113 DNA MER1_type? -318 203 2 266 148 19 0 chr4 5279065 5279119 -197049228 + GA-rich Low_complexity Low_complexity 1 55 0 1184 247 50 15 chr4 5279693 5280094 -197048253 + HAL1 LINE L1 781 1195 -1312 2154 101 0 71 chr4 5280264 5280601 -197047746 + AluSq SINE Alu 1 313 0 1236 196 57 25 chr4 5280937 5281399 -197046948 - L1MC/D LINE L1 -749 5633 5258 2863 235 81 87 chr4 5281513 5281589 -197046758 - L1MC/D LINE L1 -1085 5297 5222 2229 110 0 0 chr4 5281589 5281881 -197046466 - AluSq SINE Alu -21 292 1 2863 235 81 87 chr4 5281881 5283115 -197045232 - L1MC/D LINE L1 -1160 5222 3995 2391 68 6 3 chr4 5283373 5283684 -197044663 + AluSx SINE Alu 1 312 0 875 276 85 65 chr4 5284171 5284631 -197043716 - MLT1J LTR MaLR -42 469 1 530 227 153 0 chr4 5284924 5285074 -197043273 + MIR SINE MIR 41 213 -49 298 210 49 0 chr4 5285074 5285155 -197043192 + MIR SINE MIR 129 213 -49 298 210 49 0 chr4 5285155 5285236 -197043111 + MIR SINE MIR 129 213 -49 323 262 71 8 chr4 5285236 5285362 -197042985 + MIR SINE MIR 129 262 0 310 319 60 64 chr4 5286499 5286734 -197041613 + MIR SINE MIR 28 261 -1 4825 98 0 12 chr4 5286868 5287528 -197040819 - L1P3 LINE L1 -5804 657 6 1669 206 27 0 chr4 5287666 5288039 -197040308 - L1 LINE L1 -1112 5034 4652 5653 190 10 22 chr4 5288042 5289217 -197039130 + L1 LINE L1 3470 4630 -1516 2698 236 48 38 chr4 5289227 5290177 -197038170 - L1 LINE L1 -2166 3980 3021 466 237 95 27 chr4 5290157 5290419 -197037928 - L1MC/D LINE L1 -3961 2423 2144 * 321 177 89 48 chr4 5290444 5290568 -197037779 - L1MC4 LINE L1 0 8042 7914 * 581 307 42 3 chr4 5290551 5290857 -197037490 - L1M4 LINE L1 -947 5199 4882 3333 115 8 123 chr4 5290890 5291540 -197036807 - L1PB2 LINE L1 -7 6144 5570 5554 217 9 12 chr4 5291640 5292890 -197035457 - L1PB2 LINE L1 -906 5240 3995 2061 63 7 7 chr4 5292994 5293263 -197035084 - AluSx SINE Alu -29 283 15 1577 158 31 54 chr4 5293263 5293580 -197034767 - MER31B LTR ERV1 -156 310 1 692 265 64 15 chr4 5293703 5293907 -197034440 - MER58A DNA MER1_type -9 215 2 972 239 80 84 chr4 5295257 5295691 -197032656 - MLT2B1 LTR ERVL -8 512 71 1153 205 216 3 chr4 5295960 5296335 -197032012 + MLT1C LTR MaLR 10 464 -3 1031 227 58 73 chr4 5296338 5296517 -197031830 + MER113 DNA MER1_type? 32 212 -309 1568 213 56 34 chr4 5296517 5296874 -197031473 - MLT1A1 LTR MaLR 0 365 1 1031 227 58 73 chr4 5296874 5297091 -197031256 + MER113 DNA MER1_type? 212 422 -99 30547 109 10 15 chr4 5297280 5302919 -197025428 + L1PA8 LINE L1 845 6487 0 3079 152 12 44 chr4 5302919 5303702 -197024645 + L1PA16 LINE L1 5031 5783 -383 790 144 68 0 chr4 5303702 5303833 -197024514 + L1PA16 LINE L1 6025 6165 -1 2749 241 75 15 chr4 5303836 5303879 -197024468 + L1MB7 LINE L1 3973 4012 -2134 202 0 91 0 chr4 5303879 5303912 -197024435 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 2749 241 75 15 chr4 5303912 5304740 -197023607 + L1MB7 LINE L1 4012 4896 -1250 640 276 60 0 chr4 5304747 5304997 -197023350 - L1M4 LINE L1 -1456 4690 4426 237 213 0 0 chr4 5305002 5305049 -197023298 + L1PA12 LINE L1 6116 6162 -6 28 29 0 0 chr4 5305066 5305101 -197023246 + AT_rich Low_complexity Low_complexity 1 35 0 530 221 39 0 chr4 5305102 5305206 -197023141 + Tigger3(Golem) DNA MER2_type 1 108 -2921 * 1598 117 55 16 chr4 5305193 5305500 -197022847 + Tigger3(Golem) DNA MER2_type 2274 2592 -437 240 167 0 0 chr4 5305500 5305542 -197022805 - L1PA13 LINE L1 -6343 444 403 2023 122 0 0 chr4 5305552 5305838 -197022509 + L1PA15 LINE L1 5879 6164 -1 1710 58 0 108 chr4 5305845 5306103 -197022244 + AluY SINE Alu 1 230 -81 356 275 0 0 chr4 5306103 5306194 -197022153 - L1ME LINE L1 -699 5465 5375 252 89 44 0 chr4 5306205 5306250 -197022097 + Alu SINE Alu 254 300 0 * 2716 150 48 17 chr4 5306230 5306689 -197021658 + Tigger3(Golem) DNA MER2_type 2557 3029 0 3936 191 58 36 chr4 5306689 5307939 -197020408 + L1MB7 LINE L1 4899 6175 -9 306 217 28 85 chr4 5307949 5308055 -197020292 + L1MC4a LINE L1 5880 5979 -1829 2164 227 88 64 chr4 5308236 5308595 -197019752 + L1ME3A LINE L1 5317 5666 -504 2462 73 0 0 chr4 5308595 5308896 -197019451 + AluSg SINE Alu 1 301 -9 2164 227 88 64 chr4 5308896 5309361 -197018986 + L1ME3A LINE L1 5666 6161 -9 1607 117 68 19 chr4 5309490 5309755 -197018592 - MLT1B LTR MaLR 0 390 113 1457 150 31 8 chr4 5310198 5310452 -197017895 - Tigger2 DNA MER2_type -1 2717 2458 2410 129 47 3 chr4 5310505 5310870 -197017477 - Tigger2 DNA MER2_type -1966 752 372 1816 99 8 4 chr4 5310973 5311226 -197017121 - L1PA8 LINE L1 -51 6121 5868 1949 126 136 79 chr4 5311256 5311621 -197016726 + MSTA LTR MaLR 1 393 -35 2192 123 0 13 chr4 5311621 5311930 -197016417 - AluSx SINE Alu -7 305 1 1949 126 136 79 chr4 5311930 5311969 -197016378 + MSTA LTR MaLR 393 428 0 9112 146 56 22 chr4 5311971 5313498 -197014849 + MSTA-int LTR MaLR 3 1580 0 2096 141 147 8 chr4 5313498 5313873 -197014474 + MSTA LTR MaLR 1 427 -1 993 308 51 45 chr4 5313895 5314404 -197013943 - L1MEd LINE L1 -5596 523 12 188 234 21 0 chr4 5314605 5314652 -197013695 - L2 LINE L2 0 3313 3266 2010 121 4 4 chr4 5316464 5316769 -197011578 - AluSx SINE Alu 0 305 1 719 145 69 0 chr4 5316772 5316903 -197011444 + L1MB2 LINE L1 6028 6167 -4 359 252 17 17 chr4 5316911 5317026 -197011321 + MIR SINE MIR 135 249 -13 1209 87 0 0 chr4 5317030 5317179 -197011168 - AluSg SINE Alu -161 149 1 956 264 97 19 chr4 5317299 5317834 -197010513 - L1M4 LINE L1 -2803 3343 2767 260 287 121 45 chr4 5318052 5318209 -197010138 - L2 LINE L2 0 3272 3104 1491 253 55 30 chr4 5318523 5319032 -197009315 - L1ME3 LINE L1 -1 6161 5640 315 281 26 18 chr4 5319184 5319298 -197009049 - MIR3 SINE MIR -24 184 70 236 271 169 34 chr4 5319933 5320051 -197008296 + L2 LINE L2 3139 3272 0 720 222 0 0 chr4 5320052 5320306 -197008041 + (TGAG)n Simple_repeat Simple_repeat 1 254 0 933 172 0 0 chr4 5320342 5320522 -197007825 + (TGAG)n Simple_repeat Simple_repeat 1 180 0 333 273 206 5 chr4 5320547 5320741 -197007606 + L2 LINE L2 2536 2768 -546 2187 128 0 6 chr4 5320753 5321066 -197007281 + AluSx SINE Alu 1 311 -1 201 291 96 8 chr4 5321072 5321260 -197007087 + MIR SINE MIR 16 260 -2 281 272 278 12 chr4 5321339 5321512 -197006835 + MIR SINE MIR 35 253 -9 1378 267 132 16 chr4 5321632 5322436 -197005911 + L2 LINE L2 2420 3288 -25 850 303 16 28 chr4 5322482 5322736 -197005611 + MIR SINE MIR 2 252 -10 309 293 98 62 chr4 5322860 5323085 -197005262 - L2 LINE L2 -115 3157 2925 303 140 0 0 chr4 5323161 5323211 -197005136 + (CA)n Simple_repeat Simple_repeat 2 51 0 455 341 96 47 chr4 5323384 5323812 -197004535 - L2 LINE L2 -1 3271 2823 1647 233 31 46 chr4 5323815 5324271 -197004076 - LTR16A LTR ERVL 0 450 2 348 359 84 20 chr4 5324303 5324554 -197003793 - L2 LINE L2 -502 2812 2546 355 230 58 0 chr4 5324657 5324744 -197003603 - MIR SINE MIR -122 140 49 302 138 17 0 chr4 5324828 5324886 -197003461 + (TTA)n Simple_repeat Simple_repeat 2 60 0 279 241 123 92 chr4 5325404 5325440 -197002907 + L1ME4a LINE L1 5795 5828 -293 2450 58 3 0 chr4 5325440 5325735 -197002612 + AluY SINE Alu 2 297 -14 279 241 123 92 chr4 5325735 5326014 -197002333 + L1ME4a LINE L1 5828 6120 -1 2735 235 81 36 chr4 5326829 5327599 -197000748 - L1ME2 LINE L1 -66 6098 5241 2449 61 0 3 chr4 5327599 5327896 -197000451 + AluY SINE Alu 1 296 -15 2735 235 81 36 chr4 5327896 5328300 -197000047 - L1ME2 LINE L1 -923 5241 4857 375 362 82 15 chr4 5328300 5328496 -196999851 - LTR16C LTR ERVL -197 294 86 370 237 65 47 chr4 5328948 5329180 -196999167 - L1ME LINE L1 -303 5818 5583 225 276 17 138 chr4 5330619 5330735 -196997612 - MIR SINE MIR -58 150 49 444 311 66 59 chr4 5331357 5331628 -196996719 + L2 LINE L2 2858 3134 -179 419 0 20 0 chr4 5331628 5331679 -196996668 + (TG)n Simple_repeat Simple_repeat 2 53 0 444 311 66 59 chr4 5331679 5331815 -196996532 + L2 LINE L2 3134 3268 -45 2848 249 142 11 chr4 5331876 5332856 -196995491 + L1MEc LINE L1 34 1141 -5255 2600 231 66 57 chr4 5332845 5333219 -196995128 + L1M4 LINE L1 3604 3973 -2173 * 3641 83 13 0 chr4 5333219 5333666 -196994681 - MLT2A2 LTR ERVL 0 453 1 2600 231 66 57 chr4 5333666 5334053 -196994294 + L1M4 LINE L1 3973 4378 -1768 2056 115 11 4 chr4 5334053 5334331 -196994016 - AluSg SINE Alu -30 280 1 2600 231 66 57 chr4 5334331 5334504 -196993843 + L1M4 LINE L1 4378 4548 -1598 * 10300 26 0 0 chr4 5334502 5335687 -196992660 - L1PA2 LINE L1 -1397 4749 3565 8370 14 1 0 chr4 5335687 5337099 -196991248 + L1PA2 LINE L1 4743 6155 0 1378 221 34 0 chr4 5337123 5337445 -196990902 + L1M4 LINE L1 4533 4865 -1281 223 173 19 192 chr4 5337446 5337520 -196990827 - L2 LINE L2 -93 3220 3167 6388 60 18 15 chr4 5337520 5338298 -196990049 + LTR17 LTR ERV1 1 780 0 223 173 19 192 chr4 5338298 5338327 -196990020 - L2 LINE L2 -146 3167 3135 2258 114 0 0 chr4 5339101 5339400 -196988947 + AluSx SINE Alu 1 299 -13 227 387 124 13 chr4 5339723 5339948 -196988399 - L2 LINE L2 -339 2975 2726 201 349 19 0 chr4 5339969 5340075 -196988272 - L2 LINE L2 -299 2973 2866 2229 91 0 17 chr4 5340149 5340447 -196987900 - AluY SINE Alu -18 293 1 339 340 27 0 chr4 5340447 5340594 -196987753 - MIR SINE MIR 0 262 112 384 293 153 27 chr4 5340660 5340994 -196987353 + L2 LINE L2 2594 2969 -345 256 278 88 36 chr4 5341022 5341216 -196987131 - LTR67 LTR ERVL -2 555 352 303 260 42 31 chr4 5341271 5341367 -196986980 - LTR67 LTR ERVL -369 188 92 245 279 72 27 chr4 5341520 5341631 -196986716 + L2 LINE L2 3182 3297 -16 355 178 55 0 chr4 5341723 5341796 -196986551 - MER116 DNA Mariner 0 80 4 433 254 54 15 chr4 5342453 5342583 -196985764 + MIR SINE MIR 79 213 -49 244 288 0 0 chr4 5342620 5342679 -196985668 + MIR SINE MIR 204 262 0 821 180 0 0 chr4 5343396 5343518 -196984829 + FLAM_C SINE Alu 2 123 -20 227 198 75 23 chr4 5344317 5344408 -196983939 + MIR SINE MIR 85 147 -61 257 294 88 0 chr4 5345069 5345171 -196983176 - L2 LINE L2 -26 3246 3136 742 279 12 59 chr4 5345225 5345415 -196982932 + MIR SINE MIR 21 198 -64 2061 146 0 0 chr4 5345415 5345717 -196982630 + AluSx SINE Alu 1 302 -10 742 279 12 59 chr4 5345717 5345780 -196982567 + MIR SINE MIR 198 262 0 214 289 0 0 chr4 5345790 5345842 -196982505 - L2 LINE L2 -191 3081 3030 1131 186 48 5 chr4 5345858 5346068 -196982279 - MER20 DNA MER1_type 0 219 1 27 0 0 0 chr4 5346940 5346967 -196981380 + AT_rich Low_complexity Low_complexity 1 27 0 13798 139 36 14 chr4 5347890 5350155 -196978192 - Tigger1 DNA MER2_type -81 2337 24 425 103 0 17 chr4 5350270 5350328 -196978019 + AluJ/FLAM SINE Alu 2 58 -254 319 317 60 12 chr4 5350910 5351077 -196977270 + L2 LINE L2 3096 3270 -2 481 208 285 27 chr4 5351516 5351776 -196976571 - MLT1G1 LTR MaLR -24 571 245 355 260 12 8 chr4 5352150 5352275 -196976072 + MIR3 SINE MIR 70 196 -12 828 264 57 31 chr4 5353202 5353554 -196974793 + HAL1 LINE L1 2 362 -2145 4528 44 2 0 chr4 5353571 5354090 -196974257 - L1PA3 LINE L1 -3 6152 5633 11417 35 1 1 chr4 5354190 5355572 -196972775 - L1PA3 LINE L1 -2076 4070 2689 1397 301 118 27 chr4 5355573 5356526 -196971821 + HAL1 LINE L1 360 1398 -1109 255 271 57 0 chr4 5356529 5356599 -196971748 + HAL1 LINE L1 1434 1507 -1000 1690 189 6 31 chr4 5356599 5356917 -196971430 - AluJb SINE Alu 0 312 3 1494 262 75 74 chr4 5356952 5357861 -196970486 + HAL1 LINE L1 1596 2505 -2 2912 185 24 2 chr4 5358469 5358978 -196969369 + MLT2B1 LTR ERVL 1 520 0 257 192 0 39 chr4 5359222 5359274 -196969073 + MARNA DNA Mariner 64 113 -473 249 317 38 59 chr4 5359299 5359485 -196968862 + MIR SINE MIR 46 227 -35 343 316 53 36 chr4 5359523 5359748 -196968599 - MARNA DNA Mariner -173 413 185 200 253 0 35 chr4 5360378 5360465 -196967882 + (TA)n Simple_repeat Simple_repeat 1 84 0 203 189 57 0 chr4 5360510 5360563 -196967784 - MIR SINE MIR -58 204 149 6721 150 40 9 chr4 5360668 5363672 -196964675 - L1PBa LINE L1 -2396 4466 1311 618 115 353 0 chr4 5363674 5363796 -196964551 - L1PBa LINE L1 -5704 1159 995 * 1203 143 10 0 chr4 5363792 5363988 -196964359 - L1PBa LINE L1 -6665 198 1 209 311 66 9 chr4 5363993 5364099 -196964248 + MIR SINE MIR 82 193 -69 423 305 31 16 chr4 5364186 5364314 -196964033 + L2 LINE L2 3180 3309 -4 7515 148 15 24 chr4 5364322 5365463 -196962884 + L1MA5 LINE L1 3984 5135 -1165 2224 120 0 0 chr4 5365463 5365764 -196962583 + AluSx SINE Alu 1 301 -11 7515 148 15 24 chr4 5365764 5366958 -196961389 + L1MA5 LINE L1 5135 6298 -2 1615 247 50 8 chr4 5366958 5367481 -196960866 + L1M4 LINE L1 3080 3624 -2522 29 47 0 0 chr4 5367481 5367524 -196960823 + AT_rich Low_complexity Low_complexity 1 43 0 407 202 59 17 chr4 5367718 5367837 -196960510 - L1M4 LINE L1 -1015 5131 5008 22 0 0 0 chr4 5367837 5367859 -196960488 + AT_rich Low_complexity Low_complexity 1 22 0 5969 25 3 9 chr4 5367865 5368533 -196959814 - L1PA3 LINE L1 0 6155 5492 537 198 58 0 chr4 5368535 5368656 -196959691 + L1M4 LINE L1 3619 3746 -2400 290 273 114 30 chr4 5368959 5369091 -196959256 + L2 LINE L2 3171 3313 0 262 180 34 79 chr4 5369108 5369197 -196959150 - MIR SINE MIR 0 262 178 203 250 50 0 chr4 5369894 5369954 -196958393 - MIR SINE MIR -12 250 188 367 284 132 56 chr4 5369961 5370158 -196958189 - MIR SINE MIR -3 259 48 269 206 0 15 chr4 5370269 5370337 -196958010 + (CATATA)n Simple_repeat Simple_repeat 1 67 0 329 264 195 38 chr4 5371104 5371263 -196957084 - MIR3 SINE MIR -4 204 21 578 243 104 30 chr4 5371754 5371956 -196956391 + MIR SINE MIR 46 262 0 221 338 68 0 chr4 5372358 5372432 -196955915 + L2 LINE L2 3101 3179 -93 335 286 209 5 chr4 5372501 5372707 -196955640 + MIR SINE MIR 10 257 -5 410 333 117 0 chr4 5373476 5373647 -196954700 + L2 LINE L2 2771 2961 -353 5367 258 116 29 chr4 5373689 5375613 -196952734 + L1ME1 LINE L1 816 2573 -4368 984 229 19 19 chr4 5375613 5375823 -196952524 - MER63A DNA MER1_type 0 210 1 5367 258 116 29 chr4 5375823 5376327 -196952020 + L1ME1 LINE L1 2573 3032 -3909 2340 103 0 3 chr4 5376327 5376637 -196951710 - AluY SINE Alu -2 309 1 5367 258 116 29 chr4 5376637 5377748 -196950599 + L1ME1 LINE L1 3032 4833 -2108 588 161 0 0 chr4 5377781 5377874 -196950473 + HY3 scRNA scRNA 4 96 -5 2850 213 97 38 chr4 5377894 5378048 -196950299 + L1ME1 LINE L1 5967 6110 -851 1851 131 57 17 chr4 5378048 5378346 -196950001 - AluSx SINE Alu -2 310 1 2850 213 97 38 chr4 5378346 5379115 -196949232 + L1ME1 LINE L1 6110 6952 -9 391 288 31 49 chr4 5379122 5379285 -196949062 + L2 LINE L2 3140 3299 -14 234 0 0 0 chr4 5379286 5379312 -196949035 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 233 234 138 21 chr4 5379322 5379416 -196948931 + MIR SINE MIR 20 124 -138 7458 172 156 13 chr4 5379458 5380956 -196947391 - MER52A LTR ERV1 0 1755 44 220 321 74 0 chr4 5381123 5381204 -196947143 + L2 LINE L2 3136 3222 -50 216 329 12 12 chr4 5381266 5381348 -196946999 - MIR SINE MIR -19 243 162 674 155 30 37 chr4 5381730 5381963 -196946384 + AluJb SINE Alu 35 312 0 366 274 183 0 chr4 5382410 5382574 -196945773 - MIR SINE MIR 0 262 69 218 311 120 24 chr4 5383525 5383655 -196944692 + MIR SINE MIR 77 228 -34 2107 159 26 34 chr4 5383655 5384033 -196944314 - THE1C LTR MaLR 0 375 1 218 311 120 24 chr4 5384033 5384069 -196944278 + MIR SINE MIR 228 259 -3 510 257 11 75 chr4 5384252 5384439 -196943908 + MLT1D LTR MaLR 14 188 -438 14925 205 70 13 chr4 5384439 5384494 -196943853 + L1MA4A LINE L1 5 55 -6950 1915 136 59 56 chr4 5384494 5384868 -196943479 + THE1C LTR MaLR 1 375 0 14925 205 70 13 chr4 5384868 5387966 -196940381 + L1MA4A LINE L1 55 2974 -4031 189 0 0 0 chr4 5387966 5387987 -196940360 + (CAA)n Simple_repeat Simple_repeat 2 22 0 14925 205 70 13 chr4 5387987 5391174 -196937173 + L1MA4A LINE L1 2974 6746 -259 2073 123 3 0 chr4 5391174 5391458 -196936889 - AluSx SINE Alu -27 285 1 14925 205 70 13 chr4 5391458 5391727 -196936620 + L1MA4A LINE L1 6746 6998 -7 27 29 0 0 chr4 5391727 5391761 -196936586 + AT_rich Low_complexity Low_complexity 1 34 0 924 184 161 11 chr4 5391774 5392044 -196936303 + MLT1D LTR MaLR 216 502 -3 217 267 105 23 chr4 5392047 5392133 -196936214 + MIR SINE MIR 159 251 -11 1091 204 13 44 chr4 5392433 5392658 -196935689 - MER20 DNA MER1_type 0 219 2 929 200 44 62 chr4 5393086 5393361 -196934986 - MLT1C LTR MaLR -197 270 1 2122 109 0 3 chr4 5393609 5393892 -196934455 + AluSq SINE Alu 2 283 -30 226 196 0 0 chr4 5393894 5393940 -196934407 - L1MC4 LINE L1 -1339 6703 6658 468 150 0 0 chr4 5393940 5394020 -196934327 + (CA)n Simple_repeat Simple_repeat 2 81 0 276 158 0 0 chr4 5395578 5395635 -196932712 + (CA)n Simple_repeat Simple_repeat 2 58 0 429 205 0 0 chr4 5396194 5396311 -196932036 + (TCCA)n Simple_repeat Simple_repeat 1 117 0 828 272 99 60 chr4 5396329 5396945 -196931402 - L2 LINE L2 -37 3276 2641 1329 115 0 0 chr4 5397545 5397728 -196930619 + AluSp SINE Alu 129 311 -2 2752 161 69 13 chr4 5397735 5398274 -196930073 - L1MB2 LINE L1 -10 6161 5593 1274 167 34 0 chr4 5398300 5398504 -196929843 - AluJb SINE Alu -47 265 55 477 266 198 54 chr4 5399343 5399711 -196928636 - LTR33A LTR ERVL -10 513 93 193 277 0 0 chr4 5400004 5400051 -196928296 + L2 LINE L2 3186 3232 -40 189 287 126 11 chr4 5400219 5400306 -196928041 - MIR SINE MIR -60 148 52 271 289 40 40 chr4 5400918 5401067 -196927280 + L2 LINE L2 2685 2833 -481 304 314 127 33 chr4 5401268 5401513 -196926834 - MLT1K LTR MaLR -182 406 139 2214 102 0 7 chr4 5401777 5402070 -196926277 - AluSq SINE Alu -22 291 1 238 327 113 24 chr4 5402122 5402290 -196926057 + L2 LINE L2 3104 3286 -27 189 308 84 63 chr4 5403031 5403174 -196925173 + MIR SINE MIR 70 215 -47 204 333 19 29 chr4 5403290 5403395 -196924952 + MIR SINE MIR 46 149 -113 235 322 66 25 chr4 5403771 5403892 -196924455 - MER5A DNA MER1_type -1 188 63 772 69 0 0 chr4 5404082 5404184 -196924163 - L1MA1 LINE L1 0 6302 6201 2062 157 13 24 chr4 5404969 5405346 -196923001 + MLT1B LTR MaLR 1 373 -17 585 254 21 0 chr4 5406109 5406251 -196922096 + MER45A DNA AcHobo 34 178 0 256 349 66 0 chr4 5406264 5406370 -196921977 - MIR SINE MIR -71 191 79 390 273 60 40 chr4 5406497 5406647 -196921700 + L2 LINE L2 3160 3312 -1 357 298 142 0 chr4 5406701 5406842 -196921505 - MIR SINE MIR -55 207 47 672 244 5 86 chr4 5407235 5407298 -196921049 + MIR SINE MIR 26 93 -169 1923 193 11 67 chr4 5407298 5407733 -196920614 - MLT2D LTR ERVL 0 414 4 672 244 5 86 chr4 5407733 5407890 -196920457 + MIR SINE MIR 93 228 -34 524 267 36 27 chr4 5408212 5408426 -196919921 - MIR SINE MIR -13 249 34 447 254 260 21 chr4 5409251 5409730 -196918617 - L2 LINE L2 0 3313 2713 200 310 0 0 chr4 5409783 5409841 -196918506 - L2 LINE L2 -774 2540 2483 1304 277 260 15 chr4 5409858 5410945 -196917402 - L2 LINE L2 -1938 1376 23 295 243 0 23 chr4 5411253 5411515 -196916832 + C-rich Low_complexity Low_complexity 1 255 0 317 306 67 40 chr4 5411881 5412055 -196916292 + MIR3 SINE MIR 12 190 -18 364 341 12 49 chr4 5412101 5412265 -196916082 + MIR3 SINE MIR 37 194 -14 281 331 111 94 chr4 5412712 5413072 -196915275 - L2 LINE L2 -8 3264 2899 421 303 43 33 chr4 5413135 5413184 -196915163 + MIR SINE MIR 20 67 -177 2335 100 6 3 chr4 5413184 5413495 -196914852 - AluSq SINE Alu -1 312 1 421 303 43 33 chr4 5413495 5413633 -196914714 + MIR SINE MIR 67 207 -37 228 244 309 24 chr4 5413776 5413899 -196914448 - MIR SINE MIR -5 257 100 301 255 29 29 chr4 5414471 5414573 -196913774 + L3b LINE CR1 1279 1380 -203 1871 198 7 44 chr4 5414739 5415144 -196913203 - MLT1B LTR MaLR 0 390 1 1490 250 70 2 chr4 5415160 5415616 -196912731 + MLT1D LTR MaLR 1 487 -18 277 282 12 12 chr4 5415629 5415714 -196912633 + MIR SINE MIR 162 246 -16 1076 243 36 30 chr4 5416154 5416406 -196911941 - MLT1C LTR MaLR -29 438 182 2228 109 23 7 chr4 5416406 5416710 -196911637 - AluY SINE Alu -2 309 1 1076 243 36 30 chr4 5416710 5416786 -196911561 - MLT1C LTR MaLR -285 182 108 269 143 175 0 chr4 5416873 5416936 -196911411 - MLT1C LTR MaLR -368 99 26 195 310 0 0 chr4 5417442 5417500 -196910847 - L2 LINE L2 -563 2751 2694 2033 125 32 0 chr4 5417609 5417888 -196910459 + AluSx SINE Alu 7 294 -18 240 261 144 27 chr4 5418113 5418224 -196910123 + MIR SINE MIR 105 228 -34 186 370 0 0 chr4 5418243 5418316 -196910031 + MIR SINE MIR 188 260 -2 317 324 82 34 chr4 5418725 5418845 -196909502 - MIR SINE MIR -25 237 101 2680 115 51 5 chr4 5418845 5419254 -196909093 - MSTA LTR MaLR 0 428 1 317 324 82 34 chr4 5419254 5419340 -196909007 - MIR SINE MIR -161 101 21 378 265 121 8 chr4 5420145 5420277 -196908070 - MIR SINE MIR -39 223 77 1104 278 44 54 chr4 5420280 5420784 -196907563 - MLT1E LTR MaLR -3 590 92 314 299 124 17 chr4 5420856 5421090 -196907257 + L2 LINE L2 2990 3248 -65 1210 221 95 52 chr4 5421523 5421966 -196906381 - MLT1C LTR MaLR 0 467 6 218 311 68 14 chr4 5422811 5422885 -196905462 - L2 LINE L2 -28 3285 3208 793 212 13 87 chr4 5423001 5423232 -196905115 - MER58C DNA MER1_type -1 214 1 469 278 69 0 chr4 5423971 5424115 -196904232 + MIR SINE MIR 47 200 -62 486 153 57 57 chr4 5424213 5424346 -196904001 - MER5A DNA MER1_type -53 136 4 287 272 130 0 chr4 5424357 5424449 -196903898 - MER5A DNA MER1_type 0 189 86 219 331 50 2 chr4 5425073 5425211 -196903136 + MIR SINE MIR 33 175 -76 373 293 121 0 chr4 5426250 5426366 -196901981 - L2 LINE L2 -2 3270 3141 325 234 184 96 chr4 5427234 5427712 -196900635 - MLT1H LTR MaLR -17 532 13 192 221 256 12 chr4 5427961 5428047 -196900300 - L2 LINE L2 -21 3251 3145 339 277 184 28 chr4 5428052 5428193 -196900154 - MER5B DNA MER1_type -5 173 11 2266 188 65 32 chr4 5428504 5429042 -196899305 + MER74A LTR ERVL 3 558 0 1376 196 110 6 chr4 5429576 5429893 -196898454 - MLT1C LTR MaLR -8 459 110 479 186 102 51 chr4 5430174 5430292 -196898055 - MLT1C LTR MaLR -343 124 1 2133 102 7 0 chr4 5430314 5430588 -196897759 - AluY SINE Alu -9 302 27 2119 138 22 43 chr4 5430859 5430943 -196897404 + MLT1A1 LTR MaLR 1 85 -280 2014 149 155 13 chr4 5430943 5431318 -196897029 - MSTA LTR MaLR 0 428 1 9075 178 42 1 chr4 5431325 5432911 -196895436 - MSTA-int LTR MaLR 0 1651 1 1844 138 121 87 chr4 5432911 5433325 -196895022 - MSTA LTR MaLR 0 428 1 2119 138 22 43 chr4 5433325 5433602 -196894745 + MLT1A1 LTR MaLR 89 363 -2 2154 146 125 8 chr4 5433655 5434038 -196894309 + MSTA LTR MaLR 1 428 0 268 301 36 0 chr4 5434598 5434681 -196893666 - LTR67 LTR ERVL -366 191 106 701 206 153 53 chr4 5436261 5436489 -196891858 - MLT1A1 LTR MaLR -41 324 74 2442 88 0 0 chr4 5436489 5436785 -196891562 - AluY SINE Alu -15 296 1 240 211 175 0 chr4 5436805 5436862 -196891485 - MER2 DNA MER2_type -1 344 278 914 203 9 42 chr4 5436921 5437138 -196891209 - MER2 DNA MER2_type -135 210 1 233 128 106 0 chr4 5437148 5437195 -196891152 - MLT1A1 LTR MaLR -311 54 3 * 567 250 27 7 chr4 5437195 5437334 -196891013 + MLT1A2 LTR MaLR 233 374 0 282 248 199 71 chr4 5438242 5438592 -196889755 + L2 LINE L2 2624 3063 -250 * 458 257 18 0 chr4 5438591 5438704 -196889643 - MIR SINE MIR -75 187 73 308 286 142 24 chr4 5438708 5438971 -196889376 - MLT1K LTR MaLR 0 588 327 282 258 0 0 chr4 5439058 5439155 -196889192 + L1MC/D LINE L1 5156 5252 -894 422 247 140 88 chr4 5439243 5439607 -196888740 + L1MC/D LINE L1 5429 5811 -1997 319 161 16 16 chr4 5439607 5439669 -196888678 - MER46C DNA MER2_type -1 337 276 28 61 0 0 chr4 5439677 5439726 -196888621 + AT_rich Low_complexity Low_complexity 1 49 0 454 241 76 0 chr4 5439770 5439915 -196888432 - MER46C DNA MER2_type -97 241 86 904 259 19 42 chr4 5440631 5440894 -196887453 - MIR SINE MIR -2 260 4 280 272 39 10 chr4 5441620 5441723 -196886624 + CT-rich Low_complexity Low_complexity 5 110 0 196 362 46 11 chr4 5442445 5442619 -196885728 + L2 LINE L2 2827 3006 -266 540 335 61 48 chr4 5442666 5443176 -196885171 - L1MEd LINE L1 -997 1267 69 485 269 210 31 chr4 5443177 5443530 -196884817 - MLT1H LTR MaLR -7 542 127 492 232 54 152 chr4 5445369 5445645 -196882702 - MIR SINE MIR 0 262 14 324 331 8 0 chr4 5445677 5445810 -196882537 - MARNA DNA Mariner -43 543 410 2057 126 0 53 chr4 5446340 5446530 -196881817 - AluSq SINE Alu 0 310 142 2445 87 0 3 chr4 5446530 5446840 -196881507 - AluY SINE Alu -2 309 1 2057 126 0 53 chr4 5446840 5446975 -196881372 - AluSq SINE Alu -168 142 1 623 290 44 11 chr4 5447245 5447428 -196880919 - MIR SINE MIR -72 190 2 325 340 89 49 chr4 5448075 5448501 -196879846 - L2 LINE L2 -3 3269 2827 300 295 23 54 chr4 5448827 5448956 -196879391 + MIR SINE MIR 119 243 -19 243 321 74 0 chr4 5449018 5449099 -196879248 - L2 LINE L2 -50 3222 3136 7201 175 158 12 chr4 5449270 5450761 -196877586 + MER52A LTR ERV1 48 1755 0 243 234 138 21 chr4 5450803 5450897 -196877450 - MIR SINE MIR -138 124 20 234 0 0 0 chr4 5450907 5450933 -196877414 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 438 282 31 49 chr4 5450934 5451097 -196877250 - L2 LINE L2 -14 3299 3140 2631 231 92 27 chr4 5451104 5451873 -196876474 - L1ME1 LINE L1 -9 6952 6105 1902 138 57 7 chr4 5451873 5452170 -196876177 + AluSx SINE Alu 1 312 0 2631 231 92 27 chr4 5452170 5452319 -196876028 - L1ME1 LINE L1 -856 6105 5967 549 161 0 0 chr4 5452339 5452432 -196875915 - HY3 scRNA scRNA -5 96 4 4866 262 114 28 chr4 5452465 5453576 -196874771 - L1ME1 LINE L1 -2108 4833 3819 2367 107 0 3 chr4 5453576 5453886 -196874461 + AluY SINE Alu 1 309 -2 4866 262 114 28 chr4 5453886 5454390 -196873957 - L1ME1 LINE L1 -3122 3819 3360 924 229 19 19 chr4 5454390 5454600 -196873747 + MER63A DNA MER1_type 1 210 0 4866 262 114 28 chr4 5454600 5456523 -196871824 - L1ME1 LINE L1 -3581 3360 816 405 333 117 0 chr4 5456565 5456736 -196871611 - L2 LINE L2 -353 2961 2771 354 289 204 5 chr4 5457499 5457710 -196870637 - MIR SINE MIR 0 262 10 217 338 68 0 chr4 5457779 5457853 -196870494 - L2 LINE L2 -93 3179 3101 606 263 117 29 chr4 5458252 5458492 -196869855 - MIR SINE MIR 0 262 2 233 328 172 38 chr4 5458518 5458884 -196869463 - L2 LINE L2 -627 2687 2273 348 264 195 38 chr4 5458933 5459092 -196869255 + MIR3 SINE MIR 21 204 -4 311 269 8 76 chr4 5459841 5459960 -196868387 + L1MC4 LINE L1 6622 6732 -1310 428 274 132 56 chr4 5460036 5460233 -196868114 + MIR SINE MIR 48 259 -3 214 250 50 0 chr4 5460240 5460300 -196868047 + MIR SINE MIR 188 250 -12 260 366 27 9 chr4 5460373 5460485 -196867862 + MIR SINE MIR 24 137 -71 272 180 34 79 chr4 5461002 5461091 -196867256 + MIR SINE MIR 178 262 0 318 280 114 30 chr4 5461108 5461240 -196867107 - L2 LINE L2 0 3313 3171 197 336 50 17 chr4 5461372 5461491 -196866856 - L2 LINE L2 -209 3063 2941 257 262 94 60 chr4 5462190 5462339 -196866008 + MIR3 SINE MIR 33 186 -22 184 346 0 0 chr4 5462438 5462490 -196865857 - L2 LINE L2 -14 3258 3207 690 254 50 35 chr4 5462578 5462661 -196865686 + MIR SINE MIR 28 108 -154 1453 241 81 27 chr4 5462661 5463104 -196865243 - MLT1C LTR MaLR 0 467 1 690 254 50 35 chr4 5463104 5463221 -196865126 + MIR SINE MIR 108 231 -31 41271 36 22 1 chr4 5464052 5470079 -196858268 - L1PA2 LINE L1 0 6155 1 571 257 41 53 chr4 5470116 5470287 -196858060 - MIR SINE MIR 0 262 94 225 223 155 58 chr4 5470467 5470570 -196857777 + MIR SINE MIR 29 141 -67 1312 163 8 31 chr4 5471096 5471354 -196856993 - L1MB5 LINE L1 0 6174 5923 1973 133 33 0 chr4 5471734 5472034 -196856313 + AluSq SINE Alu 1 310 -3 349 336 29 14 chr4 5472399 5472539 -196855808 - MIR3 SINE MIR -49 159 18 1973 133 3 30 chr4 5472796 5473097 -196855250 + AluJb SINE Alu 1 293 -19 211 243 30 52 chr4 5473160 5473259 -196855088 + MIR SINE MIR 99 200 -8 184 287 176 0 chr4 5473413 5473521 -196854826 + L2 LINE L2 3146 3272 0 23 33 0 0 chr4 5474062 5474092 -196854255 + AT_rich Low_complexity Low_complexity 1 30 0 1997 122 3 14 chr4 5474510 5474804 -196853543 + AluSx SINE Alu 1 291 -21 3419 116 25 26 chr4 5475007 5475535 -196852812 + MER1A DNA MER1_type 1 527 0 442 327 7 20 chr4 5475852 5476002 -196852345 - L3 LINE CR1 -89 1488 1341 302 353 14 43 chr4 5476034 5476241 -196852106 + MIR SINE MIR 51 251 -11 445 250 74 23 chr4 5476400 5476576 -196851771 + MIR SINE MIR 49 233 -29 257 339 35 9 chr4 5476809 5476924 -196851423 - L2 LINE L2 -477 2837 2720 * 393 286 124 57 chr4 5476921 5477064 -196851283 + MIR SINE MIR 6 169 -93 1280 164 19 5 chr4 5477064 5477277 -196851070 - MER20 DNA MER1_type -3 216 1 393 286 124 57 chr4 5477277 5477343 -196851004 + MIR SINE MIR 169 229 -33 192 345 36 0 chr4 5478110 5478165 -196850182 + MIR3 SINE MIR 133 189 -19 195 42 0 0 chr4 5478672 5478696 -196849651 + (GA)n Simple_repeat Simple_repeat 2 25 0 269 233 0 0 chr4 5478883 5478943 -196849404 + MIR SINE MIR 88 147 -61 2188 122 0 3 chr4 5479072 5479367 -196848980 + AluSq SINE Alu 1 294 -19 203 288 34 0 chr4 5479536 5479595 -196848752 + L2 LINE L2 3136 3196 -76 1448 177 59 67 chr4 5479703 5480076 -196848271 - MLT1B LTR MaLR -20 370 1 239 299 0 0 chr4 5480149 5480216 -196848131 + MIR SINE MIR 115 181 -81 235 318 65 9 chr4 5481171 5481278 -196847069 - L2 LINE L2 -24 3248 3136 243 292 14 0 chr4 5481940 5482012 -196846335 + MIR SINE MIR 22 94 -168 2668 54 0 6 chr4 5482652 5482965 -196845382 - AluY SINE Alu 0 311 1 1984 102 11 25 chr4 5483036 5483319 -196845028 + AluSp SINE Alu 1 279 -34 575 129 0 10 chr4 5483337 5483438 -196844909 + (GGAA)n Simple_repeat Simple_repeat 1 100 0 792 207 40 6 chr4 5483484 5483658 -196844689 + MER5A DNA MER1_type 1 180 -9 479 311 21 31 chr4 5483844 5484037 -196844310 - MIR SINE MIR -70 192 2 926 127 0 182 chr4 5484095 5484331 -196844016 - 7SK RNA RNA 0 193 1 311 261 35 49 chr4 5484353 5484495 -196843852 + MER5B DNA MER1_type 1 140 -38 208 335 99 13 chr4 5484801 5484953 -196843394 - MIR3 SINE MIR -24 184 20 187 273 91 57 chr4 5485303 5485391 -196842956 + MIR SINE MIR 55 145 -63 469 320 120 27 chr4 5486063 5486434 -196841913 - L2 LINE L2 -223 3090 2685 618 242 3 0 chr4 5487516 5487869 -196840478 + (TG)n Simple_repeat Simple_repeat 1 354 0 780 217 49 0 chr4 5488135 5488319 -196840028 - MER20 DNA MER1_type -24 195 3 317 260 0 6 chr4 5488933 5489114 -196839233 + (CA)n Simple_repeat Simple_repeat 1 180 0 2067 183 46 0 chr4 5489342 5489736 -196838611 - MSTB LTR MaLR 0 426 15 435 343 157 0 chr4 5490051 5490261 -196838086 - MIR SINE MIR -1 261 19 201 74 0 0 chr4 5490310 5490337 -196838010 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 412 244 193 10 chr4 5490652 5490849 -196837498 - MIR SINE MIR -10 252 20 341 294 87 38 chr4 5491016 5491255 -196837092 - MIR SINE MIR -12 250 1 419 297 143 6 chr4 5491289 5491464 -196836883 - MIR SINE MIR -7 255 57 348 255 20 29 chr4 5491764 5491866 -196836481 + L1ME4a LINE L1 5800 5900 -221 278 141 16 47 chr4 5492587 5492641 -196835706 + ORSL DNA AcHobo 1 54 -221 1365 247 70 20 chr4 5492641 5493086 -196835261 - MLT1C LTR MaLR 0 467 1 302 267 67 0 chr4 5493820 5493895 -196834452 + MIR SINE MIR 14 93 -169 2339 59 42 3 chr4 5494231 5494518 -196833829 + AluY SINE Alu 1 298 -13 237 321 130 41 chr4 5494724 5494970 -196833377 - L2 LINE L2 -90 3182 2915 2054 180 69 7 chr4 5496629 5497069 -196831278 + MLT1C LTR MaLR 1 467 0 194 360 12 0 chr4 5497081 5497167 -196831180 + MER5A DNA MER1_type 80 166 -23 279 345 18 0 chr4 5497372 5497482 -196830865 - LTR16C LTR ERVL -287 204 93 996 163 98 25 chr4 5498298 5498501 -196829846 - MER20 DNA MER1_type -1 218 1 198 286 209 9 chr4 5498632 5498737 -196829610 - L2 LINE L2 0 3313 3188 408 258 86 7 chr4 5498879 5499030 -196829317 - MIR SINE MIR -72 190 28 2318 104 3 0 chr4 5499283 5499582 -196828765 + AluSx SINE Alu 1 300 -12 241 289 59 17 chr4 5499727 5499859 -196828488 + MIR3 SINE MIR 25 161 -47 2375 79 0 16 chr4 5500590 5500894 -196827453 + AluSg SINE Alu 1 299 -11 1912 122 4 0 chr4 5500905 5501160 -196827187 + AluSx SINE Alu 39 294 -18 2356 80 6 26 chr4 5501337 5501650 -196826697 - AluSq SINE Alu -6 307 1 949 215 45 126 chr4 5502047 5502555 -196825792 + MLT1C LTR MaLR 1 467 0 640 293 90 24 chr4 5502998 5503332 -196825015 - MLT1I LTR MaLR -50 359 4 281 336 66 8 chr4 5504243 5504499 -196823848 - LTR33 LTR ERVL -241 280 10 2394 100 3 0 chr4 5504514 5504869 -196823478 - AluSx SINE Alu 0 356 1 416 300 53 87 chr4 5504882 5505182 -196823165 + L3 LINE CR1 1251 1540 -37 599 228 178 15 chr4 5505350 5505547 -196822800 + MIR SINE MIR 13 241 -21 2794 54 3 40 chr4 5505664 5506037 -196822310 - MER4E LTR ERV1 0 766 408 43870 47 1 1 chr4 5506037 5512155 -196816192 - L1PA4 LINE L1 -5 6150 30 1322 200 0 8 chr4 5512203 5512443 -196815904 - MER65C LTR ERV1 -41 420 183 377 118 0 0 chr4 5512449 5512500 -196815847 - MER65C LTR ERV1 -410 51 1 638 333 57 41 chr4 5512502 5512995 -196815352 - MER65C-int LTR ERV1 -2 4869 4369 1501 274 74 14 chr4 5513112 5513531 -196814816 - MER65C-int LTR ERV1 -779 4092 3649 1619 107 5 0 chr4 5513548 5513763 -196814584 + AluSg/x SINE Alu 82 297 -15 291 139 0 0 chr4 5513772 5513815 -196814532 + tRNA-Gln-CAG tRNA tRNA 1 43 -32 3326 197 60 77 chr4 5513816 5515050 -196813297 - MER65C-int LTR ERV1 -3125 3473 1037 699 137 0 0 chr4 5515052 5515192 -196813155 - AluSc SINE Alu 0 317 178 1240 197 45 74 chr4 5515193 5515562 -196812785 - MER65-int LTR ERV1 -2902 1969 1612 2307 98 7 0 chr4 5515562 5515857 -196812490 - AluSx SINE Alu -15 297 1 1240 197 45 74 chr4 5515857 5515908 -196812439 - MER65-int LTR ERV1 -3259 1612 1561 44458 40 6 2 chr4 5516028 5522149 -196806198 - L1PA3 LINE L1 -3 6152 7 521 257 43 53 chr4 5522156 5522343 -196806004 - MER34 LTR ERV1 -319 223 39 282 154 0 58 chr4 5522629 5522681 -196805666 - LTR57-int LTR ERVL -4992 351 303 305 307 57 17 chr4 5523412 5523588 -196804759 - MIR SINE MIR -26 236 54 402 301 7 15 chr4 5523885 5524021 -196804326 + L2 LINE L2 3136 3270 -2 215 277 208 10 chr4 5524137 5524238 -196804109 - MIR SINE MIR -109 153 33 496 231 52 15 chr4 5524642 5524776 -196803571 + MIR3 SINE MIR 17 155 -53 426 278 28 45 chr4 5525587 5525793 -196802554 + MIR SINE MIR 1 205 -57 25 0 0 0 chr4 5526099 5526124 -196802223 + AT_rich Low_complexity Low_complexity 1 25 0 746 212 7 0 chr4 5527636 5527782 -196800565 + MER58B DNA MER1_type 195 341 0 1958 140 164 32 chr4 5528016 5528359 -196799988 - MSTA LTR MaLR 0 428 28 2012 130 0 7 chr4 5528359 5528665 -196799682 + AluSx SINE Alu 1 304 0 1958 140 164 32 chr4 5528665 5528698 -196799649 - MSTA LTR MaLR -400 28 1 1761 199 70 3 chr4 5529387 5529729 -196798618 + MLT1A1 LTR MaLR 1 365 0 386 285 148 54 chr4 5530565 5530935 -196797412 - L2 LINE L2 -284 2988 2590 843 286 68 39 chr4 5531542 5531624 -196796723 - MLT1L LTR MaLR -14 601 523 1663 194 0 9 chr4 5531624 5531939 -196796408 + AluJo SINE Alu 1 312 0 843 286 68 39 chr4 5531939 5532342 -196796005 - MLT1L LTR MaLR -92 523 102 339 321 44 0 chr4 5532706 5532843 -196795504 - MIR SINE MIR -6 256 114 256 204 0 0 chr4 5533085 5533129 -196795218 + MLT1F1 LTR MaLR 82 125 -442 2636 219 14 10 chr4 5533129 5533719 -196794628 + L1MD3 LINE L1 7404 7995 0 411 273 64 52 chr4 5534073 5534340 -196794007 + HAL1 LINE L1 801 1070 -1437 312 203 29 94 chr4 5534315 5534453 -196793894 + L1MA4 LINE L1 6165 6293 -7 * 6637 180 19 20 chr4 5534532 5536421 -196791926 + L1PA16 LINE L1 3895 5779 -387 1952 169 0 0 chr4 5536421 5536728 -196791619 + AluSx SINE Alu 1 307 -5 6637 180 19 20 chr4 5536728 5537114 -196791233 + L1PA16 LINE L1 5779 6164 -2 573 316 33 9 chr4 5537169 5537381 -196790966 - MIR SINE MIR 0 262 46 2556 117 14 0 chr4 5537461 5537820 -196790527 - THE1B LTR MaLR 0 364 1 10126 111 60 2 chr4 5537820 5539314 -196789033 - THE1B-int LTR MaLR 0 1580 1 2408 135 6 6 chr4 5539314 5539678 -196788669 - THE1B LTR MaLR 0 364 1 557 251 35 18 chr4 5540006 5540177 -196788170 - MER69A DNA AcHobo -2 175 2 1456 206 102 75 chr4 5540469 5540751 -196787596 - MER34 LTR ERV1 -9 533 235 2571 53 0 31 chr4 5540751 5541072 -196787275 + AluY SINE Alu 1 311 0 1456 206 102 75 chr4 5541072 5541191 -196787156 - MER34 LTR ERV1 -307 235 121 8552 202 54 29 chr4 5541191 5541627 -196786720 - MER34-int LTR ERV1 -250 4686 4262 2126 122 11 63 chr4 5541627 5541989 -196786358 + MER61A LTR ERV1 1 343 0 8552 202 54 29 chr4 5541989 5543631 -196784716 - MER34-int LTR ERV1 -674 4262 2556 27168 39 9 0 chr4 5543631 5549425 -196778922 + L1PA4 LINE L1 2 5832 -323 749 54 0 0 chr4 5549460 5549553 -196778794 + L1PA4 LINE L1 6054 6146 -9 402 194 101 36 chr4 5549560 5549699 -196778648 - MER34-int LTR ERV1 -3558 1378 1231 294 281 52 44 chr4 5550018 5550153 -196778194 - MER34-int LTR ERV1 -6147 654 519 1342 186 129 73 chr4 5550166 5550614 -196777733 - MER66A LTR ERV1 0 601 100 2528 201 44 2 chr4 5551049 5551546 -196776801 - MER34 LTR ERV1 0 542 25 659 290 47 53 chr4 5551893 5552345 -196776002 + LTR16A1 LTR ERVL 4 452 -5 189 259 155 0 chr4 5552365 5552423 -196775924 - L2 LINE L2 -65 3207 3141 365 301 81 0 chr4 5553103 5553239 -196775108 - MIR SINE MIR -70 192 46 235 312 0 0 chr4 5553342 5553419 -196774928 + MIR SINE MIR 176 252 -10 243 250 0 0 chr4 5553434 5553518 -196774829 + (CTG)n Simple_repeat Simple_repeat 3 86 0 383 309 17 11 chr4 5553524 5553760 -196774587 + (TTG)n Simple_repeat Simple_repeat 1 237 0 381 276 19 12 chr4 5554066 5554389 -196773958 + (TTG)n Simple_repeat Simple_repeat 1 325 0 232 324 124 0 chr4 5554990 5555095 -196773252 + L2 LINE L2 3150 3267 -5 2206 104 20 0 chr4 5555266 5555563 -196772784 - AluSq SINE Alu -10 303 1 1227 188 38 15 chr4 5555871 5556132 -196772215 - L1MA9 LINE L1 -38 6274 6008 352 221 26 62 chr4 5556465 5556578 -196771769 - MIR SINE MIR -68 194 86 312 163 0 0 chr4 5556682 5556731 -196771616 - MLT2D LTR ERVL 0 414 366 1340 143 177 33 chr4 5556735 5556842 -196771505 + MER2 DNA MER2_type 3 93 -252 3525 125 9 24 chr4 5556842 5557377 -196770970 + MER1A DNA MER1_type 1 527 0 1340 143 177 33 chr4 5557377 5557569 -196770778 + MER2 DNA MER2_type 93 345 0 1652 203 72 6 chr4 5557569 5557918 -196770429 - MLT2D LTR ERVL -42 372 1 1125 249 76 15 chr4 5558442 5559015 -196769332 - L2 LINE L2 0 3313 2700 741 301 115 8 chr4 5559191 5559603 -196768744 - L2 LINE L2 -204 3109 2655 279 314 51 8 chr4 5559691 5559809 -196768538 + L2 LINE L2 3189 3311 -2 294 95 0 0 chr4 5559810 5559852 -196768495 + (TGGA)n Simple_repeat Simple_repeat 1 42 0 207 0 0 0 chr4 5560269 5560292 -196768055 + (A)n Simple_repeat Simple_repeat 1 23 0 495 306 39 69 chr4 5560544 5560904 -196767443 - LTR67 LTR ERVL -124 433 85 1020 129 14 37 chr4 5560912 5561048 -196767299 - MLT1A2 LTR MaLR -1 373 235 345 47 0 0 chr4 5561048 5561091 -196767256 + (GA)n Simple_repeat Simple_repeat 2 44 0 1020 129 14 37 chr4 5561091 5561273 -196767074 - MLT1A2 LTR MaLR -139 235 1 281 50 25 0 chr4 5561380 5561420 -196766927 + L2 LINE L2 3214 3254 -18 21 36 0 0 chr4 5561833 5561861 -196766486 + AT_rich Low_complexity Low_complexity 1 28 0 2541 65 0 0 chr4 5561953 5562247 -196766100 + AluY SINE Alu 1 294 -17 302 230 73 51 chr4 5562254 5562432 -196765915 + L1MC/D LINE L1 5258 5439 -2369 1853 244 54 9 chr4 5562448 5563212 -196765135 + L1ME1 LINE L1 60 897 -5499 2508 237 50 35 chr4 5563213 5565227 -196763120 + L1ME1 LINE L1 3028 5212 -1023 216 0 0 0 chr4 5565227 5565251 -196763096 + (CA)n Simple_repeat Simple_repeat 2 25 0 2508 237 50 35 chr4 5565251 5566284 -196762063 + L1ME1 LINE L1 5212 6228 -7 318 315 0 0 chr4 5566294 5566386 -196761961 + L1MC/D LINE L1 5427 5518 -2290 21 0 0 0 chr4 5566480 5566501 -196761846 + AT_rich Low_complexity Low_complexity 1 21 0 597 278 128 18 chr4 5566645 5566926 -196761421 - L2 LINE L2 -3 3310 2999 270 336 0 9 chr4 5567110 5567220 -196761127 + MIR SINE MIR 45 153 -55 375 257 83 0 chr4 5567229 5567338 -196761009 - L2 LINE L2 -3 3269 3152 952 201 67 48 chr4 5567341 5567610 -196760737 + MLT1A2 LTR MaLR 2 275 -99 1800 164 0 11 chr4 5567624 5567911 -196760436 + AluJb SINE Alu 5 288 -24 586 254 31 21 chr4 5568025 5568218 -196760129 + MIR SINE MIR 34 228 -34 189 107 0 0 chr4 5570634 5570662 -196757685 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 385 247 55 41 chr4 5570768 5570914 -196757433 + MIR SINE MIR 8 155 -107 251 229 41 82 chr4 5571063 5571185 -196757162 + MLT1J2 LTR MaLR 3 119 -331 6838 36 0 1 chr4 5571374 5572176 -196756171 + L1PA4 LINE L1 5352 6152 -3 7074 183 169 16 chr4 5572235 5573751 -196754596 + MER52A LTR ERV1 1 1749 -6 504 224 131 90 chr4 5573768 5574013 -196754334 + MLT1J LTR MaLR 257 511 0 471 219 31 25 chr4 5574206 5574366 -196753981 - L1ME4a LINE L1 -2 6119 5959 437 110 14 0 chr4 5574387 5574460 -196753887 + (TTCC)n Simple_repeat Simple_repeat 1 74 0 277 306 39 54 chr4 5574668 5574919 -196753428 - MIR SINE MIR -5 257 9 260 211 211 0 chr4 5575034 5575129 -196753218 - MIR SINE MIR -116 146 32 1967 126 99 15 chr4 5575245 5575579 -196752768 + THE1B LTR MaLR 3 364 0 12400 79 6 0 chr4 5575579 5577145 -196751202 + THE1B-int LTR MaLR 1 1575 -5 2339 99 51 26 chr4 5577151 5577503 -196750844 + THE1B LTR MaLR 4 364 0 699 285 52 38 chr4 5577505 5577874 -196750473 - HAL1 LINE L1 -100 2407 2034 397 219 31 0 chr4 5577871 5577967 -196750380 + L1MC5 LINE L1 7690 7788 -173 * 597 309 78 25 chr4 5578110 5578430 -196749917 + L1MEc LINE L1 208 544 -5852 2619 115 33 14 chr4 5578476 5578895 -196749452 - MSTA LTR MaLR -1 427 1 700 199 97 58 chr4 5578963 5579189 -196749158 + L1MB8 LINE L1 5944 6178 0 729 288 30 9 chr4 5579190 5579527 -196748820 + L1MEc LINE L1 673 1016 -5380 1454 272 67 54 chr4 5579556 5580170 -196748177 + L1MCb LINE L1 3 624 -5421 481 171 29 19 chr4 5580197 5580302 -196748045 - L1MC5 LINE L1 -173 7788 7683 * 623 265 65 33 chr4 5580290 5580468 -196747879 + HAL1 LINE L1 2034 2224 -283 234 0 0 0 chr4 5580468 5580494 -196747853 + (TG)n Simple_repeat Simple_repeat 2 27 0 623 265 65 33 chr4 5580494 5580560 -196747787 + HAL1 LINE L1 2224 2286 -221 8547 242 42 19 chr4 5580606 5581348 -196746999 + L1MCb LINE L1 2442 3166 -3398 2278 110 0 7 chr4 5581348 5581656 -196746691 + AluSg SINE Alu 1 306 -4 8547 242 42 19 chr4 5581656 5583736 -196744611 + L1MCb LINE L1 3166 5284 -1280 5881 157 34 81 chr4 5583735 5584361 -196743986 + L1MC3 LINE L1 5914 6443 -1342 * 1659 192 27 3 chr4 5584361 5584485 -196743862 + AluJb SINE Alu 1 121 -191 216 0 0 0 chr4 5584485 5584509 -196743838 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 1659 192 27 3 chr4 5584509 5584681 -196743666 + AluJb SINE Alu 121 304 -8 5881 157 34 81 chr4 5584681 5585396 -196742951 + L1MC3 LINE L1 6443 7191 -594 1988 131 38 35 chr4 5585738 5586104 -196742243 - THE1C LTR MaLR -8 367 1 23 0 0 0 chr4 5586124 5586147 -196742200 + AT_rich Low_complexity Low_complexity 1 23 0 331 303 127 21 chr4 5586204 5586346 -196742001 - MIR SINE MIR -74 188 32 229 265 61 41 chr4 5586699 5586797 -196741550 - MIR SINE MIR -162 100 1 273 346 31 25 chr4 5587104 5587263 -196741084 + MIR SINE MIR 37 196 -66 352 288 11 34 chr4 5587585 5587718 -196740629 + MIR SINE MIR 16 150 -58 575 225 46 101 chr4 5588745 5588800 -196739547 - MER63A DNA MER1_type -1478 210 154 2022 131 17 3 chr4 5588800 5589090 -196739257 - AluSc SINE Alu -15 294 1 575 225 46 101 chr4 5589090 5589252 -196739095 - MER63A DNA MER1_type -1534 154 5 298 206 0 29 chr4 5589711 5589779 -196738568 - L3 LINE CR1 -533 1044 979 32831 39 7 1 chr4 5590527 5595260 -196733087 + L1PA4 LINE L1 1388 6150 -5 832 70 9 0 chr4 5595260 5595374 -196732973 + MER4E LTR ERV1 408 522 -244 254 295 51 0 chr4 5795379 5795457 -196532890 + MIR SINE MIR 173 254 -8 867 246 188 56 chr4 5796540 5797164 -196531183 + L2 LINE L2 2573 3313 0 317 308 11 11 chr4 5797203 5797294 -196531053 + MIR3 SINE MIR 8 98 -110 208 349 0 0 chr4 5797478 5797541 -196530806 + (ATG)n Simple_repeat Simple_repeat 2 64 0 817 157 29 34 chr4 5797544 5797742 -196530605 + MER6 DNA MER2_type -65 865 0 466 163 24 91 chr4 5797777 5797953 -196530394 - MIR SINE MIR 0 262 101 526 162 0 20 chr4 5798161 5798260 -196530087 - MER3 DNA MER1_type -104 105 9 609 308 59 26 chr4 5798316 5798621 -196529726 - L2 LINE L2 -3 3310 2996 1150 286 175 25 chr4 5798624 5799340 -196529007 - L2 LINE L2 -506 2808 1986 1802 207 35 72 chr4 5799352 5799868 -196528479 + MLT1D LTR MaLR 3 499 -6 211 250 86 35 chr4 5799880 5799996 -196528351 - L2 LINE L2 -1340 1974 1853 243 247 214 11 chr4 5800276 5800365 -196527982 + L2 LINE L2 3166 3272 0 605 176 0 17 chr4 5800490 5800609 -196527738 - L1MC2 LINE L1 -9 6335 6219 2113 120 3 0 chr4 5800609 5800918 -196527429 - AluSx SINE Alu -2 310 1 1069 145 0 79 chr4 5800936 5801163 -196527184 - AluJo SINE Alu -12 300 92 1243 170 17 4 chr4 5801163 5801423 -196526924 - L1M3 LINE L1 -353 5818 5549 416 298 76 8 chr4 5802320 5802451 -196525896 - MIR3 SINE MIR -64 144 5 221 197 45 76 chr4 5802485 5802551 -196525796 - MIR SINE MIR -105 103 40 2281 76 0 20 chr4 5802727 5803031 -196525316 + AluY SINE Alu 1 298 -13 1596 205 58 54 chr4 5803467 5803970 -196524377 - MLT1D LTR MaLR 0 505 1 515 303 113 42 chr4 5803973 5804379 -196523968 - MLT1K LTR MaLR -28 560 126 327 296 30 54 chr4 5805115 5805316 -196523031 - MIR SINE MIR -47 215 21 2220 93 3 7 chr4 5805400 5805710 -196522637 - AluSc SINE Alu 0 309 1 373 299 36 7 chr4 5805827 5805964 -196522383 - MIR SINE MIR -81 181 41 722 286 15 0 chr4 5806762 5806958 -196521389 - MIR SINE MIR 0 262 64 1274 232 141 20 chr4 5807098 5807546 -196520801 - MLT1D LTR MaLR -2 503 1 196 239 0 0 chr4 5807570 5807616 -196520731 - L3 LINE CR1 -126 1451 1406 2822 9 0 0 chr4 5807875 5808190 -196520157 - AluYb8 SINE Alu -2 316 2 467 232 72 16 chr4 5808253 5808378 -196519969 + MIR SINE MIR 20 151 -111 833 165 0 0 chr4 5808449 5808582 -196519765 + FLAM_C SINE Alu 1 133 0 2899 194 14 45 chr4 5809890 5810510 -196517837 - MER77 LTR ERV1 0 605 5 299 242 23 117 chr4 5810553 5810817 -196517530 - L1MC4a LINE L1 -1777 6031 5793 226 241 19 0 chr4 5811693 5811747 -196516600 - MIR SINE MIR -32 230 176 246 216 91 0 chr4 5811893 5811981 -196516366 - L1MC4 LINE L1 0 8042 7947 401 271 26 58 chr4 5812291 5812446 -196515901 - MIR SINE MIR -105 157 8 376 230 11 0 chr4 5812479 5812566 -196515781 - MER117 DNA MER1_type -40 157 70 207 290 54 32 chr4 5812766 5812859 -196515488 + MIR SINE MIR 21 115 -147 185 350 41 0 chr4 5813333 5813430 -196514917 + MIR SINE MIR 110 210 -52 2013 120 0 0 chr4 5813490 5813802 -196514545 - AluSq SINE Alu 0 312 1 238 315 48 48 chr4 5814152 5814298 -196514049 + MIR SINE MIR 76 221 -41 718 177 0 0 chr4 5814431 5814555 -196513792 + FLAM_A SINE Alu 12 135 -7 330 26 0 0 chr4 5814652 5814691 -196513656 + (TG)n Simple_repeat Simple_repeat 2 40 0 309 266 13 25 chr4 5814694 5814773 -196513574 + L1MC4 LINE L1 6648 6725 -1317 482 279 95 54 chr4 5815435 5815750 -196512597 + HAL1 LINE L1 549 876 -1631 887 259 112 61 chr4 5815788 5816490 -196511857 + HAL1 LINE L1 961 1985 -522 1389 171 16 68 chr4 5816490 5816811 -196511536 + AluJo SINE Alu 1 304 -8 887 259 112 61 chr4 5816811 5817007 -196511340 + HAL1 LINE L1 1985 2169 -338 372 271 53 13 chr4 5817075 5817226 -196511121 + HAL1 LINE L1 2018 2174 -333 3022 110 43 0 chr4 5817816 5818080 -196510267 - L1P4 LINE L1 -412 5756 5464 1985 114 3 20 chr4 5818080 5818386 -196509961 - AluSq SINE Alu -12 301 1 3022 110 43 0 chr4 5818386 5818567 -196509780 - L1P4 LINE L1 -704 5464 5292 433 221 73 7 chr4 5818610 5818746 -196509601 - L1MC5 LINE L1 -753 7208 7064 1609 103 22 0 chr4 5819797 5820029 -196508318 + L1PA13 LINE L1 5927 6163 0 2642 158 16 5 chr4 5820165 5820647 -196507700 + L1MA4 LINE L1 5546 6045 -123 1911 79 0 0 chr4 5820684 5820924 -196507423 + AluSc SINE Alu 1 240 -69 320 287 11 0 chr4 5822122 5822209 -196506138 + MIR SINE MIR 86 173 -89 581 213 0 28 chr4 5822216 5822357 -196505990 - L1MA10 LINE L1 0 6334 6198 387 186 17 169 chr4 5822369 5822495 -196505852 - L1ME1 LINE L1 -174 5992 5895 2068 114 0 0 chr4 5822495 5822798 -196505549 - AluSx SINE Alu 0 303 1 387 186 17 169 chr4 5822798 5822841 -196505506 - L1ME1 LINE L1 -271 5895 5847 2049 247 144 25 chr4 5822958 5823769 -196504578 - HAL1 LINE L1 -1478 1029 122 419 194 43 21 chr4 5824088 5824181 -196504166 - MIR SINE MIR -100 162 68 3040 120 12 58 chr4 5824587 5825262 -196503085 - L1PA3 LINE L1 -3 6152 5509 2083 104 20 0 chr4 5825704 5826001 -196502346 - AluSq SINE Alu -10 303 1 1228 188 38 15 chr4 5826309 5826570 -196501777 - L1MA9 LINE L1 -38 6274 6008 406 221 26 62 chr4 5826903 5827016 -196501331 - MIR SINE MIR -68 194 86 313 163 0 0 chr4 5827120 5827169 -196501178 - MLT2D LTR ERVL 0 414 366 534 128 284 9 chr4 5827173 5827280 -196501067 + MER2 DNA MER2_type 3 139 -206 3221 106 7 28 chr4 5827280 5827741 -196500606 + MER1A DNA MER1_type 1 451 -78 1119 219 192 39 chr4 5828615 5828940 -196499407 + MLT1D LTR MaLR 1 411 -94 1035 206 0 0 chr4 5828940 5829163 -196499184 - L1MA4 LINE L1 -1 6299 6077 1119 219 192 39 chr4 5829163 5829275 -196499072 + MLT1D LTR MaLR 411 505 0 232 296 122 9 chr4 5829434 5829549 -196498798 + MIR SINE MIR 120 247 -15 243 269 0 0 chr4 5830249 5830301 -196498046 + MIR SINE MIR 209 260 -2 320 381 28 23 chr4 5831307 5831483 -196496864 + MIR SINE MIR 10 186 -76 243 0 0 0 chr4 5831523 5831550 -196496797 + (TA)n Simple_repeat Simple_repeat 1 27 0 * 306 0 0 0 chr4 5831549 5831583 -196496764 + (GA)n Simple_repeat Simple_repeat 2 35 0 748 215 48 27 chr4 5831584 5831770 -196496577 - MIR SINE MIR -72 190 1 204 244 22 0 chr4 5831789 5831834 -196496513 + L2 LINE L2 3210 3255 -17 532 237 14 3 chr4 5831935 5832294 -196496053 + (TGGA)n Simple_repeat Simple_repeat 1 363 0 544 237 23 62 chr4 5832620 5832877 -196495470 + Charlie3 DNA MER1_type 2458 2704 -6 414 115 33 0 chr4 5833013 5833074 -196495273 + MER2 DNA MER2_type 283 345 0 1667 203 72 6 chr4 5833074 5833423 -196494924 - MLT2D LTR ERVL -42 372 1 1301 249 76 15 chr4 5833947 5834520 -196493827 - L2 LINE L2 0 3313 2700 846 298 112 8 chr4 5834696 5835108 -196493239 - L2 LINE L2 -204 3109 2655 331 314 51 8 chr4 5835197 5835315 -196493032 + L2 LINE L2 3189 3311 -2 294 95 0 0 chr4 5835316 5835358 -196492989 + (TGGA)n Simple_repeat Simple_repeat 1 42 0 207 0 0 0 chr4 5835775 5835798 -196492549 + (A)n Simple_repeat Simple_repeat 1 23 0 517 306 39 69 chr4 5836050 5836410 -196491937 - LTR67 LTR ERVL -124 433 85 1027 129 14 37 chr4 5836418 5836554 -196491793 - MLT1A2 LTR MaLR -1 373 235 345 47 0 0 chr4 5836554 5836597 -196491750 + (GA)n Simple_repeat Simple_repeat 2 44 0 1027 129 14 37 chr4 5836597 5836779 -196491568 - MLT1A2 LTR MaLR -139 235 1 306 100 183 0 chr4 5836866 5836926 -196491421 + L2 LINE L2 3184 3254 -18 21 36 0 0 chr4 5837339 5837367 -196490980 + AT_rich Low_complexity Low_complexity 1 28 0 2418 61 0 0 chr4 5837459 5837753 -196490594 + AluY SINE Alu 1 294 -17 294 230 73 51 chr4 5837760 5837938 -196490409 + L1MC/D LINE L1 5258 5439 -2369 1901 246 50 19 chr4 5837954 5838719 -196489628 + L1ME1 LINE L1 60 897 -5499 2512 239 49 34 chr4 5838720 5840734 -196487613 + L1ME1 LINE L1 3028 5212 -1023 216 0 0 0 chr4 5840734 5840758 -196487589 + (CA)n Simple_repeat Simple_repeat 2 25 0 2512 239 49 34 chr4 5840758 5841791 -196486556 + L1ME1 LINE L1 5212 6228 -7 326 315 0 0 chr4 5841801 5841893 -196486454 + L1MC/D LINE L1 5427 5518 -2290 21 0 0 0 chr4 5841986 5842007 -196486340 + AT_rich Low_complexity Low_complexity 1 21 0 1112 226 33 7 chr4 5843382 5843554 -196484793 - L1MEc LINE L1 -4236 2160 1975 4154 93 35 10 chr4 5843554 5844145 -196484202 + MER4B LTR ERV1 5 610 0 1112 226 33 7 chr4 5844145 5844278 -196484069 - L1MEc LINE L1 -4421 1975 1847 1779 165 71 19 chr4 5844284 5844648 -196483699 - L1MB5 LINE L1 -8 6166 5784 1748 184 127 29 chr4 5844745 5845163 -196483184 - LTR2B LTR ERV1 0 490 32 4013 263 62 20 chr4 5845181 5845993 -196482354 - L1MEc LINE L1 -4631 1765 989 883 86 78 0 chr4 5845993 5846121 -196482226 + MER85 DNA T2_type 1 138 -1 4013 263 62 20 chr4 5846121 5846971 -196481376 - L1MEc LINE L1 -5407 989 36 437 184 31 20 chr4 5846971 5847069 -196481278 + MIR SINE MIR 162 260 -2 2879 149 7 2 chr4 5847494 5847931 -196480416 + MER72 LTR ERV1 6 444 -278 2236 114 64 9 chr4 5847931 5848274 -196480073 - THE1C LTR MaLR 0 375 14 2020 135 0 0 chr4 5848268 5848556 -196479791 + MER72 LTR ERV1 435 722 0 * 4154 175 17 11 chr4 5849592 5850030 -196478317 + MER50 LTR ERV1 1 446 -288 2498 92 53 8 chr4 5850030 5850389 -196477958 + THE1C LTR MaLR 1 375 0 4154 175 17 11 chr4 5850389 5850657 -196477690 + MER50 LTR ERV1 446 711 -23 44615 40 2 2 chr4 5850748 5856635 -196471712 + L1PA3 LINE L1 1 5887 -268 730 271 128 18 chr4 5856878 5857159 -196471188 - L2 LINE L2 -3 3310 2999 309 336 0 9 chr4 5857343 5857453 -196470894 + MIR SINE MIR 45 153 -55 420 257 83 0 chr4 5857462 5857571 -196470776 - L2 LINE L2 -3 3269 3152 962 201 67 48 chr4 5857574 5857843 -196470504 + MLT1A2 LTR MaLR 2 275 -99 1689 164 0 11 chr4 5857857 5858144 -196470203 + AluJb SINE Alu 5 288 -24 675 275 29 24 chr4 5858244 5858451 -196469896 + MIR SINE MIR 21 228 -34 202 308 169 6 chr4 5860588 5860760 -196467587 + L2 LINE L2 2854 3053 -219 189 107 0 0 chr4 5860867 5860895 -196467452 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 181 219 0 0 chr4 5860896 5860928 -196467419 - L2 LINE L2 -12 3260 3229 430 238 54 48 chr4 5861001 5861148 -196467199 + MIR SINE MIR 8 155 -107 236 226 30 52 chr4 5861298 5861419 -196466928 + MLT1J LTR MaLR 4 157 -331 6756 41 0 1 chr4 5861608 5862410 -196465937 + L1PA4 LINE L1 5352 6152 -3 7221 184 169 16 chr4 5862469 5863985 -196464362 + MER52A LTR ERV1 1 1749 -6 505 224 131 90 chr4 5864002 5864247 -196464100 + MLT1J LTR MaLR 257 511 0 464 219 31 25 chr4 5864440 5864600 -196463747 - L1ME4a LINE L1 -2 6119 5959 314 123 18 0 chr4 5864621 5864678 -196463669 + CT-rich Low_complexity Low_complexity 1 58 0 369 294 69 50 chr4 5864886 5865136 -196463211 - MIR SINE MIR -5 257 2 333 314 147 5 chr4 5865156 5865347 -196463000 - MIR SINE MIR -13 249 32 1987 123 99 15 chr4 5865463 5865797 -196462550 + THE1B LTR MaLR 3 364 0 12449 79 6 0 chr4 5865797 5867363 -196460984 + THE1B-int LTR MaLR 1 1575 -5 2342 99 51 26 chr4 5867369 5867721 -196460626 + THE1B LTR MaLR 4 364 0 665 287 54 41 chr4 5867723 5868092 -196460255 - HAL1 LINE L1 -100 2407 2034 392 219 31 0 chr4 5868089 5868185 -196460162 + L1MC5 LINE L1 7690 7788 -173 * 613 297 81 28 chr4 5868328 5868648 -196459699 + L1MEc LINE L1 208 544 -5852 2615 117 33 14 chr4 5868694 5869113 -196459234 - MSTA LTR MaLR -1 427 1 690 199 97 58 chr4 5869181 5869407 -196458940 + L1MB8 LINE L1 5944 6178 0 732 288 30 9 chr4 5869408 5869745 -196458602 + L1MEc LINE L1 673 1016 -5380 1476 272 67 54 chr4 5869774 5870388 -196457959 + L1MCb LINE L1 3 624 -5421 478 171 29 19 chr4 5870415 5870520 -196457827 - L1MC5 LINE L1 -173 7788 7683 * 577 262 65 44 chr4 5870508 5870686 -196457661 + HAL1 LINE L1 2034 2220 -287 234 0 0 0 chr4 5870686 5870712 -196457635 + (TG)n Simple_repeat Simple_repeat 2 27 0 577 262 65 44 chr4 5870712 5870781 -196457566 + HAL1 LINE L1 2220 2286 -221 6195 246 49 15 chr4 5870827 5871569 -196456778 + L1MCb LINE L1 2442 3157 -3407 2120 116 0 7 chr4 5871569 5871879 -196456468 + AluSg SINE Alu 1 308 -2 6195 246 49 15 chr4 5871879 5873311 -196455036 + L1MCb LINE L1 3157 4647 -1917 580 324 5 0 chr4 5873415 5873600 -196454747 - MIR SINE MIR -38 224 39 2167 103 7 0 chr4 5873864 5874166 -196454181 - AluSq SINE Alu -9 304 1 196 296 122 61 chr4 5874350 5874644 -196453703 - L2 LINE L2 -46 3226 2915 331 311 49 44 chr4 5874662 5874845 -196453502 - L2 LINE L2 -508 2806 2623 2436 162 76 8 chr4 5874977 5875464 -196452883 + L1MB5 LINE L1 5592 6111 -63 316 268 173 36 chr4 5876090 5876258 -196452089 + L1ME4a LINE L1 5853 6043 -78 206 341 22 52 chr4 5876419 5876554 -196451793 - MIR3 SINE MIR -40 168 38 339 175 16 16 chr4 5876748 5876811 -196451536 + MIR3 SINE MIR 133 195 -13 188 341 141 22 chr4 5877145 5877280 -196451067 - L2 LINE L2 -598 2716 2566 306 269 121 0 chr4 5877789 5877930 -196450417 - L1M4 LINE L1 -1301 4845 4688 2155 107 3 0 chr4 5878024 5878323 -196450024 + AluSq SINE Alu 3 302 -11 898 251 31 4 chr4 5879463 5879690 -196448657 - MIR SINE MIR -1 261 29 260 314 101 0 chr4 5879762 5879921 -196448426 + MER91A DNA MER1_type 22 196 0 407 215 13 0 chr4 5880306 5880385 -196447962 + MIR SINE MIR 2 81 -181 2795 187 19 0 chr4 5880387 5880873 -196447474 + MER68 LTR ERV1 3 497 -65 * 4067 117 23 143 chr4 5880868 5881128 -196447219 - Tigger3b DNA MER2_type -1797 1232 943 2034 108 17 0 chr4 5881128 5881415 -196446932 + AluSx SINE Alu 21 312 0 4067 117 23 143 chr4 5881415 5881596 -196446751 - Tigger3b DNA MER2_type -2086 943 742 1857 150 3 10 chr4 5881596 5881896 -196446451 - AluSx SINE Alu -14 298 1 4067 117 23 143 chr4 5881896 5881975 -196446372 - Tigger3b DNA MER2_type -2287 742 655 204 40 0 0 chr4 5881975 5882000 -196446347 + (TTTTA)n Simple_repeat Simple_repeat 1 25 0 4067 117 23 143 chr4 5882000 5882884 -196445463 - Tigger3b DNA MER2_type -2374 655 1 392 116 29 14 chr4 5882884 5882953 -196445394 + MER68 LTR ERV1 491 560 -2 562 276 61 33 chr4 5882955 5883136 -196445211 + MIR SINE MIR 77 262 0 784 243 70 27 chr4 5884251 5884507 -196443840 + MIR SINE MIR 3 259 -3 200 244 0 23 chr4 5884518 5884566 -196443781 + (TAG)n Simple_repeat Simple_repeat 3 50 -36 2210 109 3 0 chr4 5884566 5884877 -196443470 + AluSq SINE Alu 1 312 -1 200 244 0 23 chr4 5884877 5884914 -196443433 + (TAG)n Simple_repeat Simple_repeat 50 86 0 2283 96 0 0 chr4 5884934 5885236 -196443111 + AluSq SINE Alu 1 302 -11 556 244 8 8 chr4 5885831 5885954 -196442393 - L2 LINE L2 -8 3305 3183 216 0 0 0 chr4 5886652 5886676 -196441671 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 186 254 34 17 chr4 5886767 5886826 -196441521 + MIR SINE MIR 81 140 -68 1673 182 65 11 chr4 5887033 5887401 -196440946 + MLT1B LTR MaLR 1 388 -2 293 302 59 27 chr4 5887403 5887605 -196440742 - MIR SINE MIR 0 262 12 33 25 0 0 chr4 5888597 5888637 -196439710 + AT_rich Low_complexity Low_complexity 1 40 0 516 323 114 24 chr4 5889054 5889388 -196438959 - L3 LINE CR1 -17 1560 1197 367 322 128 0 chr4 5889400 5889627 -196438720 - L2 LINE L2 -509 2805 2550 524 189 28 9 chr4 5889838 5889944 -196438403 - MLT1C LTR MaLR -7 460 353 262 273 55 55 chr4 5890146 5890256 -196438091 - MER5A DNA MER1_type 0 189 80 1862 186 83 34 chr4 5890259 5890704 -196437643 - MLT1C LTR MaLR 0 467 1 344 403 14 0 chr4 5890728 5890867 -196437480 + L3 LINE CR1 1436 1576 -1 272 91 23 0 chr4 5890978 5891022 -196437325 + L1MC3 LINE L1 7550 7594 -191 926 155 83 6 chr4 5891023 5891204 -196437143 + L1MC2 LINE L1 6138 6332 -12 2318 72 0 0 chr4 5891332 5891624 -196436723 + AluSx SINE Alu 1 292 -20 354 98 0 0 chr4 5893156 5893207 -196435140 + (GGGA)n Simple_repeat Simple_repeat 4 54 0 188 283 0 0 chr4 5893340 5893386 -196434961 - L2 LINE L2 -8 3264 3219 194 283 0 0 chr4 5893562 5893608 -196434739 + MIR SINE MIR 30 75 -133 180 263 30 50 chr4 5893682 5893781 -196434566 + L2 LINE L2 920 1016 -2298 1523 221 85 32 chr4 5893803 5894264 -196434083 + MLT1D LTR MaLR 21 505 0 223 213 147 13 chr4 5894377 5894452 -196433895 - MIR SINE MIR -173 89 5 310 302 223 0 chr4 5894537 5894802 -196433545 + L2 LINE L2 1228 1551 -1763 379 274 18 97 chr4 5895015 5895241 -196433106 - L2 LINE L2 -28 3285 3078 189 345 0 0 chr4 5895581 5895639 -196432708 + L2 LINE L2 3215 3272 0 198 333 109 14 chr4 5895710 5895848 -196432499 + MIR SINE MIR 88 238 -24 291 270 92 50 chr4 5896121 5896261 -196432086 + MIR3 SINE MIR 71 237 -25 185 259 0 69 chr4 5896839 5896897 -196431450 + L2 LINE L2 3249 3302 -11 197 235 12 99 chr4 5898151 5898232 -196430115 - MIR SINE MIR -116 146 73 * 254 343 20 0 chr4 5898231 5898330 -196430017 + MIR SINE MIR 52 152 -110 893 243 53 0 chr4 5899159 5899365 -196428982 + MIR SINE MIR 13 229 -33 234 303 66 53 chr4 5899452 5899680 -196428667 + L2 LINE L2 2806 3036 -236 803 111 0 22 chr4 5899681 5899816 -196428531 + L1PA13 LINE L1 6031 6162 -1 287 29 29 105 chr4 5899869 5899974 -196428373 + (TATAA)n Simple_repeat Simple_repeat 3 99 0 324 114 53 35 chr4 5899977 5900144 -196428203 + (TTATA)n Simple_repeat Simple_repeat 1 169 0 368 270 48 100 chr4 5900144 5900374 -196427973 + L2 LINE L2 3015 3232 -40 228 275 46 69 chr4 5900775 5900906 -196427441 + MIR SINE MIR 85 212 -50 2264 102 0 0 chr4 5901043 5901347 -196427000 + AluSx SINE Alu 5 308 -4 230 182 36 18 chr4 5901348 5901403 -196426944 - MIR3 SINE MIR -13 195 140 526 295 87 12 chr4 5901460 5901633 -196426714 - MIR SINE MIR -4 258 73 432 192 79 68 chr4 5902114 5902291 -196426056 + LTR16C LTR ERVL 298 476 -15 214 230 92 7 chr4 5902291 5902443 -196425904 + (GTGTG)n Simple_repeat Simple_repeat 3 167 0 292 319 104 25 chr4 5902515 5902565 -196425782 + MER5B DNA MER1_type 1 46 -132 870 238 6 0 chr4 5902565 5902737 -196425610 + FAM SINE Alu 2 174 -1 292 319 104 25 chr4 5902737 5902849 -196425498 + MER5B DNA MER1_type 46 176 -2 253 314 41 0 chr4 5903121 5903242 -196425105 + MIR3 SINE MIR 7 132 -76 234 188 0 0 chr4 5903607 5903655 -196424692 - HAL1b LINE L1 -556 792 745 460 317 108 34 chr4 5904001 5904474 -196423873 - HAL1 LINE L1 -590 1917 1410 486 286 181 26 chr4 5904486 5904752 -196423595 + L1ME4a LINE L1 5813 6119 -2 210 158 0 0 chr4 5904754 5904792 -196423555 + (TTA)n Simple_repeat Simple_repeat 3 40 0 295 235 81 59 chr4 5904835 5904971 -196423376 + LTR16A LTR ERVL 282 420 -30 * 2732 176 35 6 chr4 5904951 5905434 -196422913 - MER68 LTR ERV1 -65 497 1 1739 201 50 42 chr4 5906221 5906679 -196421668 + MLT1C LTR MaLR 6 467 0 281 355 83 0 chr4 5906681 5906802 -196421545 - MIR SINE MIR -54 208 78 2242 219 38 20 chr4 5907706 5908319 -196420028 + L1M4 LINE L1 4243 4866 -1280 * 5862 157 34 81 chr4 5908318 5908944 -196419403 + L1MC3 LINE L1 5914 6443 -1342 1543 192 27 3 chr4 5908944 5909068 -196419279 + AluJb SINE Alu 1 121 -191 216 0 0 0 chr4 5909068 5909092 -196419255 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 1543 192 27 3 chr4 5909092 5909264 -196419083 + AluJb SINE Alu 121 304 -8 5862 157 34 81 chr4 5909264 5909979 -196418368 + L1MC3 LINE L1 6443 7191 -594 1998 131 38 35 chr4 5910321 5910687 -196417660 - THE1C LTR MaLR -8 367 1 23 0 0 0 chr4 5910707 5910730 -196417617 + AT_rich Low_complexity Low_complexity 1 23 0 395 296 127 21 chr4 5910787 5910929 -196417418 - MIR SINE MIR -74 188 32 267 265 61 41 chr4 5911282 5911380 -196416967 - MIR SINE MIR -162 100 1 332 346 31 25 chr4 5911687 5911846 -196416501 + MIR SINE MIR 37 196 -66 391 288 11 34 chr4 5912168 5912301 -196416046 + MIR SINE MIR 16 150 -58 567 234 37 92 chr4 5913328 5913383 -196414964 - MER63A DNA MER1_type -1478 210 154 1903 131 17 3 chr4 5913383 5913673 -196414674 - AluSc SINE Alu -15 294 1 567 234 37 92 chr4 5913673 5913835 -196414512 - MER63A DNA MER1_type -1534 154 5 330 206 0 29 chr4 5914294 5914362 -196413985 - L3 LINE CR1 -533 1044 979 197 303 10 61 chr4 5914491 5914590 -196413757 - L2 LINE L2 -853 2461 2368 200 368 88 7 chr4 5914629 5914765 -196413582 - L3 LINE CR1 -1026 551 405 2141 71 0 7 chr4 5915444 5915726 -196412621 + AluSx SINE Alu 23 302 -10 294 333 71 0 chr4 5916014 5916140 -196412207 + L2 LINE L2 3138 3272 0 26 0 0 0 chr4 5916988 5917014 -196411333 + AT_rich Low_complexity Low_complexity 1 26 0 308 263 10 10 chr4 5918049 5918148 -196410199 + (CA)n Simple_repeat Simple_repeat 1 99 0 1184 247 241 10 chr4 5919036 5919522 -196408825 + L1MD2 LINE L1 5730 6327 -32 305 198 64 10 chr4 5919528 5919602 -196408745 + AluJ/FLAM SINE Alu 1 60 -242 249 301 139 8 chr4 5919602 5919861 -196408486 - L2 LINE L2 -1163 2151 1859 372 351 119 21 chr4 5919896 5920283 -196408064 + L2 LINE L2 2843 3267 -5 4532 80 17 19 chr4 5920549 5921067 -196407280 + L1PB2 LINE L1 5513 6031 -120 2354 75 0 7 chr4 5921067 5921372 -196406975 + AluSx SINE Alu 1 303 -9 4532 80 17 19 chr4 5921372 5921493 -196406854 + L1PB2 LINE L1 6031 6151 0 1711 211 29 27 chr4 5921743 5922156 -196406191 + MLT2D LTR ERVL 1 414 0 1263 185 22 128 chr4 5922321 5922727 -196405620 + MLT1A1 LTR MaLR 1 363 -2 323 295 62 18 chr4 5923012 5923124 -196405223 + MIR SINE MIR 107 223 -39 1596 196 164 56 chr4 5923208 5923758 -196404589 + MLT1E2 LTR MaLR 18 626 0 269 186 57 43 chr4 5925539 5925609 -196402738 - L1ME4a LINE L1 -78 6043 5973 756 194 114 0 chr4 5925870 5926045 -196402302 + L1MD3 LINE L1 7793 7987 -8 317 292 62 80 chr4 5926659 5926984 -196401363 + L2 LINE L2 2915 3233 -39 735 335 13 4 chr4 5927082 5927309 -196401038 - MIR SINE MIR -33 229 1 194 318 39 70 chr4 5928174 5928303 -196400044 + L2 LINE L2 3111 3235 -37 478 282 35 53 chr4 5928363 5928590 -196399757 - MIR SINE MIR -12 250 28 203 256 0 0 chr4 5928607 5928650 -196399697 + L2 LINE L2 3271 3313 0 209 315 13 0 chr4 5928668 5928755 -196399592 + GA-rich Low_complexity Low_complexity 1 88 0 368 292 128 65 chr4 5928765 5929118 -196399229 - L2 LINE L2 -63 3209 2835 421 268 190 0 chr4 5929249 5929391 -196398956 + MIR SINE MIR 20 188 -74 1869 137 23 0 chr4 5929594 5929893 -196398454 + AluSx SINE Alu 1 306 -6 259 314 69 0 chr4 5930579 5930681 -196397666 + MIR3 SINE MIR 11 119 -89 2883 128 16 5 chr4 5930830 5931253 -196397094 + MSTA LTR MaLR 1 428 0 7881 181 47 7 chr4 5931255 5932760 -196395587 + MSTA-int LTR MaLR 3 1567 -13 2584 111 47 8 chr4 5932761 5933147 -196395200 + MSTA LTR MaLR 28 428 0 1165 305 55 19 chr4 5933155 5933896 -196394451 - L1M4 LINE L1 -2231 3915 3148 806 104 0 17 chr4 5933919 5934034 -196394313 - AluSg/x SINE Alu -17 295 183 24 32 0 0 chr4 5934309 5934340 -196394007 + AT_rich Low_complexity Low_complexity 1 31 0 496 245 193 30 chr4 5934632 5934865 -196393482 - L2 LINE L2 -940 2374 2104 1322 190 43 4 chr4 5934944 5935090 -196393257 - AluJo SINE Alu -30 282 120 207 0 0 0 chr4 5935090 5935113 -196393234 + (TA)n Simple_repeat Simple_repeat 1 23 0 1322 190 43 4 chr4 5935113 5935224 -196393123 - AluJo SINE Alu -192 120 15 2181 207 21 31 chr4 5935576 5936098 -196392249 - Charlie1b DNA MER1_type -6 517 1 261 283 11 33 chr4 5936119 5936211 -196392136 - L2 LINE L2 -62 3210 3121 269 327 44 9 chr4 5936265 5936378 -196391969 + L2 LINE L2 2904 3020 -252 197 284 0 15 chr4 5936475 5936523 -196391824 + L2 LINE L2 3207 3254 -18 1218 67 0 0 chr4 5936523 5936701 -196391646 + (TAGA)n Simple_repeat Simple_repeat 1 178 0 291 28 0 0 chr4 5936701 5936737 -196391610 + (CATA)n Simple_repeat Simple_repeat 1 36 0 197 284 0 15 chr4 5936737 5936754 -196391593 + L2 LINE L2 3252 3272 0 203 256 49 12 chr4 5936856 5936938 -196391409 - MIR SINE MIR -65 143 59 193 261 101 43 chr4 5937385 5937454 -196390893 + MIR SINE MIR 109 181 -81 329 281 99 18 chr4 5938140 5938329 -196390018 - MIR SINE MIR -33 229 29 826 168 8 0 chr4 5939986 5940117 -196388230 - FLAM_C SINE Alu -10 133 2 214 242 0 97 chr4 5940328 5940390 -196387957 + MIR3 SINE MIR 99 154 -54 202 229 202 9 chr4 5941172 5941281 -196387066 + MIR SINE MIR 119 248 -14 21 36 0 0 chr4 5941521 5941549 -196386798 + GC_rich Low_complexity Low_complexity 1 28 0 555 228 179 0 chr4 5942442 5942587 -196385760 - MIR SINE MIR -8 254 84 376 310 76 18 chr4 5943138 5943309 -196385038 - MIR SINE MIR -75 187 7 210 330 44 0 chr4 5943314 5943405 -196384942 - MIR SINE MIR -96 166 72 202 260 231 0 chr4 5943393 5943497 -196384850 - L2 LINE L2 -697 2617 2490 * 325 278 125 65 chr4 5943562 5943645 -196384702 + L2 LINE L2 2698 2775 -497 2240 92 3 0 chr4 5943645 5943949 -196384398 + AluSx SINE Alu 1 305 -7 1551 118 4 0 chr4 5943949 5944175 -196384172 + AluSp SINE Alu 76 304 -9 325 278 125 65 chr4 5944175 5944499 -196383848 + L2 LINE L2 2774 3123 -149 1385 239 75 66 chr4 5944572 5945041 -196383306 - HAL1 LINE L1 0 2507 2029 1748 179 0 22 chr4 5945041 5945360 -196382987 - AluJb SINE Alu 0 312 1 1385 239 75 66 chr4 5945360 5945544 -196382803 - HAL1 LINE L1 -478 2029 1848 872 193 34 6 chr4 5945545 5945721 -196382626 + MER5A DNA MER1_type 6 186 -3 2168 229 117 41 chr4 5945727 5945988 -196382359 - HAL1 LINE L1 -696 1811 1571 2333 90 0 0 chr4 5945988 5946289 -196382058 - AluSg SINE Alu -9 301 1 2168 229 117 41 chr4 5946289 5946305 -196382042 - HAL1 LINE L1 -936 1571 1558 4150 159 44 24 chr4 5946305 5947072 -196381275 - LTR39 LTR ERV1 0 783 1 2168 229 117 41 chr4 5947072 5947692 -196380655 - HAL1 LINE L1 -949 1558 845 974 288 142 12 chr4 5947838 5948262 -196380085 + L2 LINE L2 2829 3307 -6 3280 224 11 3 chr4 5948370 5949017 -196379330 + MER82 DNA MER2_type 2 653 0 1275 259 63 46 chr4 5949743 5950268 -196378079 - L1ME2 LINE L1 -11 6153 5620 362 322 22 44 chr4 5950521 5950701 -196377646 - MIR SINE MIR -57 205 30 2124 177 46 37 chr4 5951425 5951832 -196376515 + L1MB8 LINE L1 5655 6070 -108 2243 125 3 0 chr4 5951832 5952129 -196376218 + AluSx SINE Alu 1 298 -14 2124 177 46 37 chr4 5952129 5952240 -196376107 + L1MB8 LINE L1 6070 6178 0 521 268 92 44 chr4 5952269 5952497 -196375850 + MIR SINE MIR 14 252 -10 2332 105 0 3 chr4 5953430 5953735 -196374612 - AluSg SINE Alu -6 304 1 594 206 58 13 chr4 5953941 5954096 -196374251 + MER45A DNA AcHobo 1 162 -16 200 171 143 71 chr4 5954263 5954333 -196374014 + L3b LINE CR1 1489 1563 -20 * 257 269 25 84 chr4 5954312 5954431 -196373916 + MIR SINE MIR 104 215 -47 533 284 20 0 chr4 5954737 5954885 -196373462 + MIR SINE MIR 2 152 -110 6619 72 25 0 chr4 5954973 5956153 -196372194 - L1PA10 LINE L1 0 6168 4960 10417 28 0 0 chr4 5956819 5958818 -196369529 - L1PA2 LINE L1 0 6155 4157 203 260 0 20 chr4 5958893 5958943 -196369404 - MIR SINE MIR -68 140 92 669 235 0 0 chr4 5959212 5959391 -196368956 + (TCCA)n Simple_repeat Simple_repeat 1 179 0 512 277 84 25 chr4 5959983 5960185 -196368162 - MIR SINE MIR -12 250 37 584 330 85 0 chr4 5960291 5960515 -196367832 + MIR SINE MIR 12 254 -8 356 225 22 0 chr4 5960553 5960642 -196367705 - MER103 DNA DNA -73 93 3 180 350 41 0 chr4 5960990 5961087 -196367260 - L2 LINE L2 -304 2968 2868 311 213 13 0 chr4 5961969 5962044 -196366303 - MIR SINE MIR -64 144 69 188 286 18 0 chr4 5962187 5962243 -196366104 - MIR SINE MIR -13 249 193 532 196 65 36 chr4 5962334 5962472 -196365875 - MIR SINE MIR -86 176 35 223 182 45 0 chr4 5962875 5962919 -196365428 + MIR SINE MIR 108 153 -109 1859 169 7 3 chr4 5962977 5963278 -196365069 + AluJb SINE Alu 1 302 -10 470 233 169 29 chr4 5964041 5964213 -196364134 - MIR SINE MIR -14 248 53 1730 189 14 0 chr4 5964607 5964734 -196363613 + AluJo SINE Alu 1 125 -187 189 0 0 0 chr4 5964734 5964755 -196363592 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1730 189 14 0 chr4 5964755 5964924 -196363423 + AluJo SINE Alu 125 301 -11 181 266 266 64 chr4 5965343 5965452 -196362895 - L2 LINE L2 -40 3232 3102 387 253 32 11 chr4 5965582 5965677 -196362670 + MIR SINE MIR 24 120 -88 473 190 15 0 chr4 5965893 5965990 -196362357 - MIR SINE MIR -65 143 45 583 268 122 58 chr4 5966388 5966530 -196361817 + L1MD2 LINE L1 5989 6121 -238 255 61 0 0 chr4 5966530 5966563 -196361784 + (CA)n Simple_repeat Simple_repeat 2 34 0 583 268 122 58 chr4 5966563 5966704 -196361643 + L1MD2 LINE L1 6121 6298 -61 15408 120 24 29 chr4 5966704 5968879 -196359468 + Tigger1 DNA MER2_type 3 2166 -252 1766 110 0 4 chr4 5968879 5969115 -196359232 - AluSc SINE Alu -74 235 1 15408 120 24 29 chr4 5969115 5969367 -196358980 + Tigger1 DNA MER2_type 2166 2418 0 583 268 122 58 chr4 5969367 5969411 -196358936 + L1MD2 LINE L1 6298 6338 -21 391 269 52 72 chr4 5969616 5969809 -196358538 + MIR SINE MIR 40 228 -34 605 187 13 47 chr4 5969863 5970013 -196358334 + MER58B DNA MER1_type 197 341 0 834 168 0 0 chr4 5970033 5970164 -196358183 + FLAM_C SINE Alu 1 131 -2 2666 200 26 17 chr4 5970216 5970437 -196357910 + L1MC/D LINE L1 4839 5057 -1302 2453 106 0 3 chr4 5970437 5970749 -196357598 + AluSx SINE Alu 2 312 0 2666 200 26 17 chr4 5970749 5971473 -196356874 + L1MC/D LINE L1 5057 5788 -571 238 170 85 0 chr4 5971675 5971722 -196356625 + L2 LINE L2 3263 3313 0 259 288 7 7 chr4 5971830 5971915 -196356432 + GA-rich Low_complexity Low_complexity 1 85 0 223 254 16 16 chr4 5972443 5972506 -196355841 + MIR SINE MIR 20 82 -180 180 228 0 0 chr4 5972636 5972693 -196355654 + (CAT)n Simple_repeat Simple_repeat 3 59 0 318 330 9 0 chr4 5972705 5972814 -196355533 + (CAT)n Simple_repeat Simple_repeat 2 111 0 404 264 6 0 chr4 5972827 5973001 -196355346 + (CAT)n Simple_repeat Simple_repeat 1 175 0 1273 201 95 77 chr4 5973024 5973497 -196354850 - MER66A LTR ERV1 0 478 97 344 277 5 0 chr4 5973566 5973778 -196354569 + (CAT)n Simple_repeat Simple_repeat 1 213 0 426 311 37 0 chr4 5973996 5974131 -196354216 - MIR SINE MIR -37 225 86 200 259 19 0 chr4 5974133 5974187 -196354160 + (TAA)n Simple_repeat Simple_repeat 2 56 0 219 292 0 45 chr4 5974198 5974287 -196354060 + MIR SINE MIR 16 100 -108 358 328 56 0 chr4 5974429 5974554 -196353793 + MIR SINE MIR 57 188 -74 313 282 76 112 chr4 5976018 5976401 -196351946 - L2 LINE L2 -2 3270 2902 1089 140 0 0 chr4 5978705 5979063 -196349284 + (TCCA)n Simple_repeat Simple_repeat 1 358 0 616 211 21 84 chr4 5979107 5979297 -196349050 - MER5B DNA MER1_type 0 178 1 404 324 21 14 chr4 5979338 5979483 -196348864 - MER5B DNA MER1_type -32 146 1 1224 85 5 70 chr4 5979486 5979685 -196348662 + MER30B DNA MER1_type 1 186 -4 394 311 13 12 chr4 5979687 5979815 -196348532 + MIR SINE MIR 34 156 -64 317 222 37 0 chr4 5980125 5980206 -196348141 + MER5A DNA MER1_type 4 87 -102 211 286 0 0 chr4 5980674 5980723 -196347624 - L2 LINE L2 -6 3307 3259 908 291 23 16 chr4 5980729 5980987 -196347360 + MIR SINE MIR 1 260 -2 287 366 10 0 chr4 5981351 5981452 -196346895 - MIR SINE MIR -3 259 158 227 372 27 16 chr4 5984297 5984480 -196343867 + MIR SINE MIR 70 254 -8 703 228 54 11 chr4 5984880 5985064 -196343283 + MIR SINE MIR 1 192 -70 210 347 10 0 chr4 5985615 5985713 -196342634 + (TGAA)n Simple_repeat Simple_repeat 1 99 0 446 257 35 20 chr4 5987248 5987400 -196340947 + MIR SINE MIR 32 185 -62 1463 190 15 90 chr4 5987689 5988079 -196340268 - MLT1B LTR MaLR -2 388 28 446 147 186 39 chr4 5988046 5988175 -196340172 - MLT1B LTR MaLR -242 148 1 * 1251 220 66 42 chr4 5988177 5988602 -196339745 + MLT1C LTR MaLR 17 463 -4 237 364 30 0 chr4 5988625 5988724 -196339623 - MIR SINE MIR -35 227 126 255 276 35 11 chr4 5988841 5988928 -196339419 + MIR SINE MIR 31 119 -89 219 350 0 40 chr4 5988936 5989036 -196339311 - MIR SINE MIR -159 103 8 3279 150 53 26 chr4 5989042 5989628 -196338719 - LTR43 LTR ERV1 0 602 1 307 214 29 14 chr4 5989642 5989712 -196338635 + MIR SINE MIR 8 78 -184 188 219 0 0 chr4 5989831 5989863 -196338484 - MER5A DNA MER1_type -1 188 157 235 265 92 0 chr4 5989874 5989947 -196338400 - MIR SINE MIR -76 132 51 1586 132 156 93 chr4 5989989 5990367 -196337980 - MER4A LTR ERV1 0 664 263 485 104 42 21 chr4 5990369 5990465 -196337882 - MER4A LTR ERV1 -566 98 1 2359 98 3 0 chr4 5990793 5991100 -196337247 - AluSq SINE Alu -5 308 1 281 312 127 26 chr4 5991298 5991487 -196336860 + MIR SINE MIR 43 250 -12 1862 189 78 71 chr4 5991588 5992154 -196336193 - LTR59 LTR ERV1 -11 586 17 518 198 35 9 chr4 5992164 5992280 -196336067 - L1PA3 LINE L1 -10 6145 6027 376 283 147 22 chr4 5992578 5992762 -196335585 + L1MC4 LINE L1 7525 7731 -311 1854 119 101 0 chr4 5992795 5993072 -196335275 - AluSx SINE Alu -7 305 1 2096 191 87 17 chr4 5993117 5993599 -196334748 - MER34 LTR ERV1 -15 527 12 241 258 155 7 chr4 5993724 5993879 -196334468 + L1MC5 LINE L1 7703 7880 -81 608 299 83 24 chr4 5994020 5994431 -196333916 + L1ME4a LINE L1 5563 5997 -124 3528 73 54 0 chr4 5994459 5994937 -196333410 + L1PA8 LINE L1 5668 6171 -1 344 246 35 18 chr4 5995076 5995190 -196333157 - L1ME1 LINE L1 -5 6161 6046 1248 180 3 52 chr4 5995215 5995504 -196332843 - L1MC3 LINE L1 -2 7783 7509 191 224 24 118 chr4 5995916 5996001 -196332346 + L2 LINE L2 2697 2773 -541 596 219 12 21 chr4 5996289 5996709 -196331638 + (TCCA)n Simple_repeat Simple_repeat 1 416 0 345 378 31 0 chr4 5996711 5996838 -196331509 - L2 LINE L2 -4 3268 3138 969 223 175 41 chr4 5997709 5998103 -196330244 - MLT1C LTR MaLR 0 467 21 2339 113 0 0 chr4 5998302 5998604 -196329743 - AluSx SINE Alu -10 302 1 632 220 124 6 chr4 5998668 5998845 -196329502 + MER58C DNA MER1_type 1 198 -17 447 320 51 6 chr4 5999188 5999363 -196328984 - MIR SINE MIR 0 262 80 1407 140 62 135 chr4 5999997 6000368 -196327979 + MER2 DNA MER2_type 1 344 0 471 331 12 17 chr4 6000536 6000708 -196327639 + MIR SINE MIR 92 262 0 208 308 84 35 chr4 6000760 6000903 -196327444 - MIR3 SINE MIR -57 151 2 1978 117 0 0 chr4 6001398 6001681 -196326666 + AluSx SINE Alu 25 307 -5 349 303 80 17 chr4 6001685 6001860 -196326487 + Charlie8 DNA MER1_type 89 274 -2143 212 246 18 18 chr4 6001942 6001999 -196326348 + MIR3 SINE MIR 104 160 -48 227 289 78 39 chr4 6003162 6003290 -196325057 + MIR SINE MIR 13 145 -117 2195 205 152 5 chr4 6003291 6003858 -196324489 - MLT1E1 LTR MaLR -1 653 4 366 252 30 15 chr4 6004332 6004463 -196323884 + (TG)n Simple_repeat Simple_repeat 2 134 0 285 289 35 35 chr4 6004493 6004635 -196323712 + (CATG)n Simple_repeat Simple_repeat 1 142 0 642 326 52 17 chr4 6005077 6005310 -196323037 + MIR SINE MIR 11 251 -11 817 169 84 0 chr4 6005331 6005473 -196322874 + AluJb SINE Alu 137 290 -22 233 263 10 30 chr4 6005473 6005572 -196322775 + (TATG)n Simple_repeat Simple_repeat 4 100 0 490 242 253 10 chr4 6007276 6007474 -196320873 + MIR SINE MIR 17 262 0 1420 182 162 17 chr4 6008184 6008530 -196319817 - MSTD LTR MaLR 0 396 1 2022 150 80 102 chr4 6009598 6010077 -196318270 - MLT2B2 LTR ERVL 0 515 48 2207 87 3 13 chr4 6010077 6010388 -196317959 + AluSg1 SINE Alu 1 308 -1 2022 150 80 102 chr4 6010388 6010435 -196317912 - MLT2B2 LTR ERVL -467 48 1 246 282 71 24 chr4 6010981 6011066 -196317281 - L2 LINE L2 0 3272 3184 348 302 16 16 chr4 6011089 6011218 -196317129 + MER117 DNA MER1_type 27 155 -42 348 278 72 0 chr4 6011260 6011357 -196316990 - MIR SINE MIR -8 254 151 375 23 0 0 chr4 6011362 6011406 -196316941 + (TG)n Simple_repeat Simple_repeat 1 44 0 485 213 148 0 chr4 6012173 6012281 -196316066 + L2 LINE L2 3190 3313 0 279 355 35 18 chr4 6012499 6012668 -196315679 + L2 LINE L2 2898 3069 -203 985 242 7 28 chr4 6012749 6013002 -196315345 - MIR SINE MIR 0 262 12 1838 162 0 0 chr4 6013071 6013380 -196314967 + AluSx SINE Alu 1 309 -3 976 159 0 16 chr4 6013400 6013582 -196314765 + AluSg/x SINE Alu 129 307 -5 1719 236 77 19 chr4 6014200 6014679 -196313668 - LTR53 LTR ERVL -12 507 1 709 83 21 0 chr4 6014849 6014945 -196313402 - AluJo SINE Alu -176 136 39 321 269 0 0 chr4 6015254 6015321 -196313026 + MIR SINE MIR 86 152 -110 2152 181 55 22 chr4 6017063 6017515 -196310832 - MLT1C LTR MaLR 0 467 1 190 361 46 0 chr4 6018288 6018418 -196309929 + L2 LINE L2 2801 2936 -378 240 276 168 22 chr4 6018418 6018603 -196309744 + LTR16A1 LTR ERVL 1 212 -245 826 208 34 5 chr4 6018745 6018952 -196309395 + LTR16A1 LTR ERVL 245 457 0 419 261 125 33 chr4 6018999 6019183 -196309164 + L2 LINE L2 3006 3206 -107 288 204 159 21 chr4 6019346 6019491 -196308856 - MIR SINE MIR -57 205 38 21 36 0 0 chr4 6019679 6019707 -196308640 + AT_rich Low_complexity Low_complexity 1 28 0 540 201 37 0 chr4 6020526 6020645 -196307702 + MER63 DNA MER1_type 679 1653 -35 2126 115 3 6 chr4 6021702 6022015 -196306332 - AluSx SINE Alu 0 312 1 181 167 0 48 chr4 6022163 6022205 -196306142 + L2 LINE L2 3014 3053 -219 370 312 64 57 chr4 6022274 6022572 -196305775 - L2 LINE L2 -1 3312 3013 2507 62 0 0 chr4 6023761 6024070 -196304277 - AluY SINE Alu -2 309 1 207 335 81 25 chr4 6024077 6024238 -196304109 + L2 LINE L2 2549 2718 -596 3730 136 62 0 chr4 6024355 6024953 -196303394 - LTR24C LTR ERV1 0 635 1 198 103 0 0 chr4 6025899 6025928 -196302419 + (A)n Simple_repeat Simple_repeat 1 29 0 286 285 8 39 chr4 6026409 6026539 -196301808 + (TATATG)n Simple_repeat Simple_repeat 1 126 0 406 279 66 0 chr4 6026559 6026681 -196301666 - MIR SINE MIR -48 214 85 376 265 15 45 chr4 6026743 6026875 -196301472 - MIR SINE MIR -74 188 61 185 270 0 81 chr4 6027011 6027085 -196301262 + MIR SINE MIR 115 182 -80 2301 151 27 117 chr4 6027438 6027883 -196300464 - MLT2B2 LTR ERVL -2 513 128 1858 135 10 7 chr4 6027883 6028179 -196300168 + AluSx SINE Alu 6 302 -10 2301 151 27 117 chr4 6028179 6028297 -196300050 - MLT2B2 LTR ERVL -387 128 1 228 245 19 47 chr4 6028733 6028839 -196299508 + CT-rich Low_complexity Low_complexity 4 106 0 661 223 7 7 chr4 6029740 6029879 -196298468 + MIR SINE MIR 35 173 -89 1057 269 56 6 chr4 6029971 6030313 -196298034 - L1MEc LINE L1 -5453 943 585 308 205 103 13 chr4 6030327 6030405 -196297942 - L1M4 LINE L1 -3317 2829 2745 352 95 16 16 chr4 6031139 6031202 -196297145 + (TCTA)n Simple_repeat Simple_repeat 3 65 0 311 133 22 0 chr4 6031202 6031247 -196297100 - Tigger2 DNA MER2_type -14 2704 2659 308 299 35 75 chr4 6031250 6031424 -196296923 + L1MEc LINE L1 266 432 -5964 2266 109 48 24 chr4 6031442 6031817 -196296530 - Tigger2 DNA MER2_type -54 2664 2281 2375 144 31 2 chr4 6031823 6032239 -196296108 - L1MA4A LINE L1 -6 6297 5870 399 183 0 14 chr4 6032249 6032320 -196296027 + MER8 DNA MER2_type 170 239 0 450 316 58 0 chr4 6032361 6032535 -196295812 - L1MC4a LINE L1 -1947 5861 5678 497 275 6 2 chr4 6032561 6032702 -196295645 - MIR SINE MIR -43 165 22 225 316 51 0 chr4 6033395 6033493 -196294854 + L2 LINE L2 2737 2839 -475 737 232 29 77 chr4 6033604 6033953 -196294394 - HAL1 LINE L1 0 2507 2176 1944 156 97 33 chr4 6034103 6034495 -196293852 - LTR59 LTR ERV1 -172 425 9 43506 35 23 1 chr4 6034497 6040510 -196287837 - L1PA3 LINE L1 -10 6145 1 303 28 0 0 chr4 6040575 6040611 -196287736 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 769 282 45 48 chr4 6040633 6040988 -196287359 - L2 LINE L2 -383 2931 2578 221 316 74 0 chr4 6041055 6041150 -196287197 + MIR SINE MIR 150 251 -11 2123 115 3 0 chr4 6041156 6041452 -196286895 + AluSx SINE Alu 1 297 -15 2616 113 6 6 chr4 6041644 6042008 -196286339 - THE1B LTR MaLR 0 364 1 1666 259 58 25 chr4 6042499 6043029 -196285318 - MER77 LTR ERV1 -4 601 54 2020 118 3 7 chr4 6043309 6043613 -196284734 + AluSx SINE Alu 1 303 -9 2626 170 41 12 chr4 6043663 6044152 -196284195 - MLT1D LTR MaLR -1 504 2 203 0 0 36 chr4 6044458 6044486 -196283861 + (TTTTA)n Simple_repeat Simple_repeat 4 30 0 2097 75 18 0 chr4 6044493 6044773 -196283574 - AluY SINE Alu -26 285 1 238 314 17 25 chr4 6044908 6045026 -196283321 + MIR3 SINE MIR 4 120 -88 525 285 90 70 chr4 6045409 6045721 -196282626 + L2 LINE L2 2955 3272 0 498 289 119 50 chr4 6045816 6046175 -196282172 - MLT1H LTR MaLR -16 533 40 221 154 0 26 chr4 6046769 6046808 -196281539 + CT-rich Low_complexity Low_complexity 2 39 0 381 270 108 14 chr4 6046964 6047112 -196281235 - MIR SINE MIR -1 261 100 335 299 92 49 chr4 6047814 6047998 -196280349 - L1ME3A LINE L1 -8 6145 5954 1290 217 72 6 chr4 6048073 6048405 -196279942 - L1ME3A LINE L1 -221 5932 5579 497 212 20 34 chr4 6048421 6048567 -196279780 - L1ME3A LINE L1 -1545 4584 4441 * 641 217 41 52 chr4 6048555 6048916 -196279431 - L1ME3A LINE L1 -2088 4041 2315 237 65 0 0 chr4 6048950 6048981 -196279366 + (TTCA)n Simple_repeat Simple_repeat 2 32 0 243 77 0 231 chr4 6049040 6049118 -196279229 + MIR SINE MIR 79 138 -124 848 279 35 80 chr4 6049118 6049835 -196278512 - L1ME3A LINE L1 -4905 1214 530 12982 24 0 1 chr4 6050416 6052768 -196275579 - L1PA3 LINE L1 -2 6153 3803 350 47 0 4 chr4 6052768 6052825 -196275522 + L1PA3 LINE L1 3753 3808 -2338 405 290 147 39 chr4 6052928 6053159 -196275188 + MIR SINE MIR 5 260 -2 195 268 37 49 chr4 6053133 6053215 -196275132 - L2 LINE L2 -4 3268 3188 * 1888 189 40 5 chr4 6053313 6053693 -196274654 - MER68 LTR ERV1 -4 558 166 1758 166 35 10 chr4 6054131 6054421 -196273926 + AluJb SINE Alu 1 297 -15 2195 126 13 3 chr4 6054642 6054951 -196273396 - AluSx SINE Alu 0 312 1 1115 31 15 0 chr4 6054966 6055096 -196273251 - AluY SINE Alu -6 305 174 279 0 0 0 chr4 6055113 6055144 -196273203 + (A)n Simple_repeat Simple_repeat 1 31 0 269 214 0 11 chr4 6055653 6055742 -196272605 + (TG)n Simple_repeat Simple_repeat 1 88 0 264 279 0 0 chr4 6055800 6055911 -196272436 + (TG)n Simple_repeat Simple_repeat 1 111 0 202 320 13 0 chr4 6055922 6055997 -196272350 + (TG)n Simple_repeat Simple_repeat 1 76 0 255 284 77 27 chr4 6056492 6056675 -196271672 + HAL1 LINE L1 2226 2417 -90 1689 202 152 5 chr4 6056735 6057170 -196271177 + MLT1D LTR MaLR 7 505 0 2276 99 13 7 chr4 6057181 6057483 -196270864 - AluSx SINE Alu -8 304 1 251 320 74 16 chr4 6058212 6058334 -196270013 + L2 LINE L2 3136 3264 -8 255 282 103 43 chr4 6058431 6058548 -196269799 + MER5B DNA MER1_type 54 177 -1 2594 57 3 0 chr4 6059167 6059466 -196268881 + AluY SINE Alu 1 300 -11 1840 192 93 25 chr4 6059796 6060269 -196268078 + MLT1D LTR MaLR 1 505 0 282 279 15 0 chr4 6060316 6060384 -196267963 + MIR SINE MIR 7 75 -187 740 254 121 4 chr4 6060468 6060708 -196267639 + L2 LINE L2 1933 2200 -1114 1149 230 7 35 chr4 6060715 6060998 -196267349 - MLT1E LTR MaLR 0 593 319 946 263 207 0 chr4 6060998 6061390 -196266957 + L2 LINE L2 2235 2707 -607 956 140 92 0 chr4 6061410 6061574 -196266773 - MER30 DNA MER1_type -51 179 1 392 270 162 7 chr4 6061586 6061734 -196266613 + MER104 DNA Tc2 1 171 -9 470 262 92 19 chr4 6061738 6062049 -196266298 + L2 LINE L2 2704 3102 -211 2167 139 0 0 chr4 6062474 6062776 -196265571 + AluSx SINE Alu 1 302 -10 248 242 21 84 chr4 6063159 6063254 -196265093 + MIR SINE MIR 8 96 -166 357 233 69 80 chr4 6063313 6063386 -196264961 + L1MEd LINE L1 859 931 -5188 2186 99 13 20 chr4 6063386 6063688 -196264659 + AluSx SINE Alu 1 300 -12 357 233 69 80 chr4 6063688 6063876 -196264471 + L1MEd LINE L1 931 1117 -5002 756 236 51 25 chr4 6064202 6064439 -196263908 + MER90 LTR ERV1 1 243 -332 277 247 74 0 chr4 6064501 6064582 -196263765 + MER90 LTR ERV1 528 614 0 337 283 91 11 chr4 6064820 6065007 -196263340 + L1MEd LINE L1 2196 2397 -3732 255 280 53 33 chr4 6065022 6065172 -196263175 + L1MEd LINE L1 2452 2604 -3525 630 306 73 48 chr4 6065216 6066116 -196262231 + L1M4 LINE L1 4202 5132 -1014 336 221 52 0 chr4 6066407 6066484 -196261863 + MIR SINE MIR 95 175 -87 502 162 110 7 chr4 6066498 6066634 -196261713 - L1MB7 LINE L1 0 6184 6035 375 253 0 57 chr4 6067048 6067161 -196261186 - L1MC4 LINE L1 -1334 6988 1977 188 210 12 0 chr4 6067163 6067244 -196261103 + (TA)n Simple_repeat Simple_repeat 1 82 0 2196 128 0 13 chr4 6067244 6067548 -196260799 - AluSx SINE Alu -12 300 1 3091 117 42 16 chr4 6067581 6068087 -196260260 - L1PA16 LINE L1 -2 6164 5646 2170 131 3 3 chr4 6068207 6068513 -196259834 + AluSx SINE Alu 1 306 -6 226 269 29 39 chr4 6068552 6068656 -196259691 - L1PBa LINE L1 -3902 2961 2859 531 307 84 14 chr4 6068671 6069182 -196259165 - L1MC4 LINE L1 -4913 1503 1012 1613 195 48 11 chr4 6070188 6070563 -196257784 - MLT1B LTR MaLR -1 389 1 303 299 0 0 chr4 6070747 6070824 -196257523 - MIR SINE MIR -178 84 8 327 268 164 18 chr4 6071021 6071214 -196257133 + MIR SINE MIR 33 250 -12 218 343 20 10 chr4 6071687 6071786 -196256561 + MIR SINE MIR 45 144 -118 261 250 47 0 chr4 6071917 6071981 -196256366 - MIR SINE MIR -109 99 33 2359 109 3 0 chr4 6072897 6073208 -196255139 + AluSx SINE Alu 1 312 0 227 299 0 15 chr4 6074107 6074174 -196254173 - MLT1J LTR MaLR -202 309 244 2200 112 27 3 chr4 6074230 6074526 -196253821 + AluSx SINE Alu 1 303 -9 235 252 216 18 chr4 6074534 6074645 -196253702 - MLT1L LTR MaLR -355 260 128 3467 121 17 6 chr4 6075214 6075735 -196252612 - MER1A DNA MER1_type 0 527 1 196 277 31 0 chr4 6076307 6076372 -196251975 + MIR3 SINE MIR 88 154 -54 342 190 0 0 chr4 6076708 6076766 -196251581 + MER94 DNA DNA 54 111 -23 2262 109 10 0 chr4 6076777 6077071 -196251276 - AluSx SINE Alu -15 297 1 369 286 27 0 chr4 6077972 6078084 -196250263 - LTR16C LTR ERVL -2 489 375 287 281 86 29 chr4 6078122 6078261 -196250086 - MLT1E2 LTR MaLR -37 589 443 308 291 34 56 chr4 6078358 6078537 -196249810 - MER5A DNA MER1_type -5 184 10 4580 137 27 23 chr4 6078725 6078918 -196249429 - L1PB4 LINE L1 0 6156 5965 2397 82 7 7 chr4 6078918 6079212 -196249135 - AluSx SINE Alu -18 294 1 4580 137 27 23 chr4 6079212 6079841 -196248506 - L1PB4 LINE L1 -191 5965 5331 302 284 90 26 chr4 6079919 6080074 -196248273 + L2 LINE L2 3149 3313 0 229 191 0 0 chr4 6080074 6080121 -196248226 + GA-rich Low_complexity Low_complexity 2 48 0 392 143 12 0 chr4 6080946 6081030 -196247317 + CT-rich Low_complexity Low_complexity 2 86 0 358 250 176 0 chr4 6081809 6081957 -196246390 - MIR SINE MIR -13 249 76 180 246 146 18 chr4 6082006 6082116 -196246231 + MIR SINE MIR 23 146 -62 491 279 19 13 chr4 6082487 6082645 -196245702 + MIR3 SINE MIR 44 202 -6 185 206 0 0 chr4 6082683 6082717 -196245630 + MIR SINE MIR 116 149 -113 398 286 8 15 chr4 6082892 6083025 -196245322 + MIR3 SINE MIR 12 143 -65 618 264 56 0 chr4 6085500 6085678 -196242669 - MER20 DNA MER1_type -1 218 31 1893 92 7 33 chr4 6086065 6086336 -196242011 - AluSg SINE Alu -46 264 1 690 258 154 27 chr4 6087805 6088104 -196240243 - MER69 DNA AcHobo -2184 342 6 991 208 59 24 chr4 6088104 6088359 -196239988 - LTR48B LTR ERV1 0 644 381 351 314 33 8 chr4 6088853 6088974 -196239373 - MER5A DNA MER1_type -3 186 63 593 290 67 37 chr4 6089099 6089399 -196238948 + LTR16B LTR ERVL 1 309 -155 411 163 8 39 chr4 6089400 6089529 -196238818 + CT-rich Low_complexity Low_complexity 1 125 0 399 234 47 58 chr4 6089532 6089703 -196238644 + LTR16B LTR ERVL 292 460 -4 1998 111 71 31 chr4 6090818 6091168 -196237179 + THE1B LTR MaLR 1 364 0 2462 134 7 34 chr4 6091287 6091697 -196236650 + MSTC LTR MaLR 30 428 0 604 274 50 5 chr4 6091833 6092034 -196236313 + L1M4 LINE L1 4848 5057 -1089 397 171 9 117 chr4 6092038 6092149 -196236198 + MLT1D LTR MaLR 1 99 -406 658 190 23 81 chr4 6092833 6093007 -196235340 + MIR SINE MIR 8 171 -91 423 226 0 0 chr4 6093073 6093175 -196235172 + (CACCAT)n Simple_repeat Simple_repeat 4 105 0 506 324 67 17 chr4 6094962 6095200 -196233147 - MIR SINE MIR -10 252 3 225 315 0 0 chr4 6095219 6095273 -196233074 + (TG)n Simple_repeat Simple_repeat 1 54 0 2049 160 102 19 chr4 6095510 6095922 -196232425 + MER83 LTR ERV1 3 448 0 392 301 77 32 chr4 6095925 6096081 -196232266 + MIR3 SINE MIR 42 204 -4 2114 151 83 2 chr4 6096288 6096685 -196231662 + MSTB1 LTR MaLR 4 432 0 220 200 0 0 chr4 6097313 6097353 -196230994 + CT-rich Low_complexity Low_complexity 2 41 0 583 275 63 5 chr4 6097378 6097567 -196230780 + MER58C DNA MER1_type 1 200 -15 210 246 105 44 chr4 6097802 6097916 -196230431 + MIR SINE MIR 102 222 -40 338 231 13 13 chr4 6098606 6098762 -196229585 + (CA)n Simple_repeat Simple_repeat 1 156 0 231 259 0 0 chr4 6098893 6098978 -196229369 + (CA)n Simple_repeat Simple_repeat 2 86 0 306 308 45 8 chr4 6099099 6099232 -196229115 - LTR16C LTR ERVL -2 489 352 435 244 6 11 chr4 6100408 6100584 -196227763 + (CA)n Simple_repeat Simple_repeat 1 175 0 343 258 78 18 chr4 6101567 6101734 -196226613 - L1ME4a LINE L1 -240 5881 5705 236 333 53 0 chr4 6101858 6101972 -196226375 - L1ME4a LINE L1 -458 5663 5544 1201 131 0 0 chr4 6102072 6102240 -196226107 + AluSg/x SINE Alu 137 304 -8 351 332 123 25 chr4 6102478 6102713 -196225634 - L1MC4a LINE L1 -1903 5905 5648 385 299 108 46 chr4 6102725 6103050 -196225297 - L1MC4a LINE L1 -2187 5621 5277 449 305 100 59 chr4 6103074 6103618 -196224729 - L1MC4a LINE L1 -893 5253 4673 1796 153 50 10 chr4 6103776 6104076 -196224271 - AluJo SINE Alu 0 312 1 2022 162 45 8 chr4 6104763 6105164 -196223183 + L1MB7 LINE L1 5752 6167 -17 1525 238 65 25 chr4 6105627 6105989 -196222358 + MLT1C LTR MaLR 1 386 -81 2878 13 0 0 chr4 6105989 6106295 -196222052 - AluYa5 SINE Alu -5 306 1 1525 238 65 25 chr4 6106295 6106381 -196221966 + MLT1C LTR MaLR 386 467 0 313 269 92 17 chr4 6106386 6106505 -196221842 + MIR SINE MIR 108 235 -27 2455 57 3 10 chr4 6106592 6106888 -196221459 + AluY SINE Alu 1 294 -17 1910 198 20 15 chr4 6107051 6107445 -196220902 + MSTD LTR MaLR 1 396 0 254 125 21 0 chr4 6108502 6108550 -196219797 + GA-rich Low_complexity Low_complexity 2 50 0 2025 117 25 18 chr4 6110177 6110531 -196217816 + AluSq SINE Alu 1 356 0 627 304 99 24 chr4 6110658 6111384 -196216963 - L2 LINE L2 0 3313 2539 465 257 71 0 chr4 6111403 6111543 -196216804 - L2 LINE L2 -896 2418 2269 269 327 10 0 chr4 6111605 6111706 -196216641 + L2 LINE L2 2947 3048 -224 1024 229 138 14 chr4 6112844 6113193 -196215154 - LTR16C LTR ERVL -2 489 98 784 242 37 0 chr4 6113330 6113520 -196214827 + MER3 DNA MER1_type 1 197 -12 247 214 0 18 chr4 6113576 6113632 -196214715 + MIR SINE MIR 96 150 -112 737 228 85 5 chr4 6113713 6113924 -196214423 + MER33 DNA MER1_type 1 228 -96 274 310 52 0 chr4 6114460 6114576 -196213771 - MER5C DNA MER1_type -202 122 1 2019 132 23 23 chr4 6114728 6114847 -196213500 + AluSx SINE Alu 1 119 -193 2033 72 4 0 chr4 6114847 6115096 -196213251 + AluY SINE Alu 61 310 -1 2019 132 23 23 chr4 6115096 6115286 -196213061 + AluSx SINE Alu 118 310 -2 537 161 0 0 chr4 6115400 6115530 -196212817 + (CA)n Simple_repeat Simple_repeat 1 130 0 298 238 114 0 chr4 6116019 6116124 -196212223 - MIR3 SINE MIR -10 198 82 455 333 18 23 chr4 6116445 6116616 -196211731 + MIR SINE MIR 81 250 -12 28 29 0 0 chr4 6116778 6116813 -196211534 + AT_rich Low_complexity Low_complexity 1 35 0 305 287 29 7 chr4 6117378 6117514 -196210833 + HAL1 LINE L1 102 240 -2267 1003 301 29 26 chr4 6117584 6117969 -196210378 + L1ME3A LINE L1 5564 5949 -221 1272 257 111 36 chr4 6117971 6118523 -196209824 + MLT1E LTR MaLR 1 593 0 2111 137 0 10 chr4 6118829 6119129 -196209218 + AluSx SINE Alu 1 297 -15 272 320 62 0 chr4 6119242 6119370 -196208977 + MLT1E-int LTR MaLR 718 853 -518 1957 116 6 75 chr4 6119412 6119730 -196208617 - AluSx SINE Alu -16 296 1 803 297 81 48 chr4 6119837 6120234 -196208113 + MLT1E-int LTR MaLR 961 1370 -1 450 292 0 8 chr4 6120235 6120355 -196207992 + MLT1E LTR MaLR 3 121 -472 481 299 119 0 chr4 6120526 6120703 -196207644 + MIR SINE MIR 31 228 -34 1328 134 26 148 chr4 6120963 6121307 -196207040 - AluYb8 SINE Alu -5 303 2 235 272 142 40 chr4 6121405 6121439 -196206908 - MIR SINE MIR -28 234 205 1159 184 76 65 chr4 6121439 6121809 -196206538 - MLT1A2 LTR MaLR 0 374 1 235 272 142 40 chr4 6121809 6121965 -196206382 - MIR SINE MIR -57 205 20 247 273 220 8 chr4 6123400 6123532 -196204815 - MIR SINE MIR -34 228 69 269 366 99 12 chr4 6123839 6124000 -196204347 - MER5B DNA MER1_type -1 177 3 975 154 7 0 chr4 6124532 6124837 -196203510 + GA-rich Low_complexity Low_complexity 1 307 0 321 261 126 18 chr4 6125032 6125143 -196203204 + MIR3 SINE MIR 39 161 -47 240 283 0 0 chr4 6125281 6125334 -196203013 + polypyrimidine Low_complexity Low_complexity 3 55 0 381 232 12 0 chr4 6125339 6125421 -196202926 - L2 LINE L2 0 3272 3190 2001 127 32 0 chr4 6125950 6126234 -196202113 + AluSx SINE Alu 5 297 -15 2396 192 24 10 chr4 6126246 6126745 -196201602 + L1MA8 LINE L1 5485 5990 -301 1460 147 65 47 chr4 6127071 6127350 -196200997 - AluJb SINE Alu -18 294 11 874 282 112 15 chr4 6127405 6127922 -196200425 + L1ME4a LINE L1 5313 5891 -230 390 323 117 33 chr4 6128375 6128709 -196199638 - L2 LINE L2 -84 3188 2827 392 235 9 0 chr4 6129181 6129296 -196199051 + (CACCAT)n Simple_repeat Simple_repeat 4 119 0 62 0 0 0 chr4 6130867 6130929 -196197418 + AT_rich Low_complexity Low_complexity 1 62 0 2177 60 4 19 chr4 6130936 6131204 -196197143 + AluY SINE Alu 1 264 -47 422 282 81 0 chr4 6131221 6131345 -196197002 + AluJb SINE Alu 164 297 -5 240 35 0 0 chr4 6133114 6133143 -196195204 + (TG)n Simple_repeat Simple_repeat 1 29 0 694 229 7 76 chr4 6133157 6133432 -196194915 - AluSp SINE Alu -31 282 27 206 288 34 0 chr4 6135038 6135097 -196193250 + MIR SINE MIR 129 189 -73 2453 211 60 11 chr4 6136083 6136180 -196192167 - L1 LINE L1 -2472 3674 3583 2291 107 0 0 chr4 6136180 6136469 -196191878 + AluSg SINE Alu 1 289 -21 2453 211 60 11 chr4 6136469 6137040 -196191307 - L1 LINE L1 -2563 3583 2973 5023 64 11 33 chr4 6137385 6138091 -196190256 + LTR8 LTR ERV1 1 691 0 300 305 17 17 chr4 6138171 6138289 -196190058 - MER5B DNA MER1_type -58 120 3 538 208 12 17 chr4 6139725 6139898 -196188449 + (CCA)n Simple_repeat Simple_repeat 2 173 0 * 669 189 11 11 chr4 6139855 6140035 -196188312 + (CAT)n Simple_repeat Simple_repeat 1 180 0 308 162 0 15 chr4 6140084 6140152 -196188195 + (CAT)n Simple_repeat Simple_repeat 1 67 0 689 295 59 8 chr4 6140152 6140389 -196187958 - MIR SINE MIR -1 261 13 203 410 8 22 chr4 6140410 6140544 -196187803 - L3b LINE CR1 -8 1575 1444 * 540 296 224 31 chr4 6140534 6141646 -196186701 + L2 LINE L2 1729 3053 -219 192 278 37 0 chr4 6141786 6141840 -196186507 + L2 LINE L2 3212 3267 -5 215 293 69 26 chr4 6141937 6142053 -196186294 - MIR SINE MIR -68 140 20 414 293 43 27 chr4 6142113 6142301 -196186046 - MIR SINE MIR -44 218 28 240 200 20 0 chr4 6142797 6142847 -196185500 + MLT1J2 LTR MaLR 92 142 -308 334 198 128 0 chr4 6143131 6143217 -196185130 + MIR SINE MIR 70 166 -96 30 27 0 0 chr4 6143394 6143431 -196184916 + AT_rich Low_complexity Low_complexity 1 37 0 476 282 116 33 chr4 6143908 6144149 -196184198 - L2 LINE L2 -1 3271 3011 1571 156 15 30 chr4 6145439 6145708 -196182639 - AluJo SINE Alu -13 299 35 216 97 0 0 chr4 6145729 6145760 -196182587 + (T)n Simple_repeat Simple_repeat 1 31 0 433 313 65 18 chr4 6145859 6146076 -196182271 - MIR SINE MIR -34 228 2 354 317 36 28 chr4 6147288 6147537 -196180810 - L2 LINE L2 -188 3084 2834 2304 78 3 10 chr4 6147969 6148265 -196180082 + AluSc SINE Alu 1 294 -15 481 299 119 0 chr4 6148525 6148702 -196179645 - MIR SINE MIR -34 228 31 450 292 0 8 chr4 6148873 6148993 -196179354 - MLT1E LTR MaLR -472 121 3 803 297 81 48 chr4 6148994 6149391 -196178956 - MLT1E-int LTR MaLR -1 1370 961 2026 107 6 75 chr4 6149498 6149816 -196178531 + AluSx SINE Alu 1 296 -16 272 320 62 0 chr4 6149858 6149986 -196178361 - MLT1E-int LTR MaLR -518 853 718 241 172 0 52 chr4 6150099 6150157 -196178190 - Alu SINE Alu -5 295 241 693 201 6 11 chr4 6150389 6150568 -196177779 + (CCA)n Simple_repeat Simple_repeat 1 178 0 313 189 0 45 chr4 6150563 6150674 -196177673 + (CACCAT)n Simple_repeat Simple_repeat 1 106 0 * 713 183 11 11 chr4 6150674 6150854 -196177493 + (CCA)n Simple_repeat Simple_repeat 1 180 0 432 218 6 26 chr4 6150858 6151014 -196177333 + (CACCAT)n Simple_repeat Simple_repeat 4 156 0 308 162 0 15 chr4 6151063 6151131 -196177216 + (CAT)n Simple_repeat Simple_repeat 1 67 0 689 295 59 8 chr4 6151131 6151368 -196176979 - MIR SINE MIR -1 261 13 203 410 8 22 chr4 6151389 6151523 -196176824 - L3b LINE CR1 -8 1575 1444 * 540 296 224 31 chr4 6151513 6152625 -196175722 + L2 LINE L2 1729 3053 -219 192 278 37 0 chr4 6152765 6152819 -196175528 + L2 LINE L2 3212 3267 -5 215 293 69 26 chr4 6152916 6153032 -196175315 - MIR SINE MIR -68 140 20 414 293 43 27 chr4 6153092 6153280 -196175067 - MIR SINE MIR -44 218 28 240 200 20 0 chr4 6153776 6153826 -196174521 + MLT1J2 LTR MaLR 92 142 -308 334 198 128 0 chr4 6154110 6154196 -196174151 + MIR SINE MIR 70 166 -96 30 27 0 0 chr4 6154373 6154410 -196173937 + AT_rich Low_complexity Low_complexity 1 37 0 476 282 116 33 chr4 6154887 6155128 -196173219 - L2 LINE L2 -1 3271 3011 1571 156 15 30 chr4 6156418 6156687 -196171660 - AluJo SINE Alu -13 299 35 216 97 0 0 chr4 6156708 6156739 -196171608 + (T)n Simple_repeat Simple_repeat 1 31 0 433 313 65 18 chr4 6156838 6157055 -196171292 - MIR SINE MIR -34 228 2 427 293 36 28 chr4 6158267 6158516 -196169831 - L2 LINE L2 -188 3084 2834 2375 80 3 7 chr4 6158948 6159249 -196169098 + AluSc SINE Alu 1 300 -9 1260 163 38 129 chr4 6159277 6159705 -196168642 + MLT1B LTR MaLR 2 374 0 475 269 54 81 chr4 6160425 6160648 -196167699 - L1MC5 LINE L1 -30 7931 7715 303 140 40 0 chr4 6160679 6160729 -196167618 + MER75 DNA T2_type 453 504 0 303 313 42 50 chr4 6160729 6160988 -196167359 - L1MC5 LINE L1 -253 7708 7452 189 0 0 0 chr4 6161516 6161537 -196166810 + (CA)n Simple_repeat Simple_repeat 2 22 0 432 37 0 0 chr4 6161862 6161916 -196166431 + (TA)n Simple_repeat Simple_repeat 1 54 0 2441 86 0 0 chr4 6161917 6162209 -196166138 - AluY SINE Alu -19 292 1 520 355 4 18 chr4 6162224 6162497 -196165850 - L1ME LINE L1 -301 5820 5552 1922 179 0 3 chr4 6162548 6162856 -196165491 - AluJo SINE Alu 0 312 6 217 214 62 107 chr4 6162930 6163009 -196165338 - L2 LINE L2 -60 3212 3138 2479 77 6 6 chr4 6163009 6163320 -196165027 + AluY SINE Alu 1 311 0 217 214 62 107 chr4 6163320 6163352 -196164995 - L2 LINE L2 -134 3138 3106 310 354 79 0 chr4 6163367 6163531 -196164816 - LTR16C LTR ERVL -26 465 289 213 261 99 49 chr4 6163638 6163780 -196164567 + L2 LINE L2 2701 2849 -465 390 227 0 11 chr4 6164085 6164173 -196164174 + L2 LINE L2 3186 3272 -41 2312 83 0 35 chr4 6164987 6165301 -196163046 + AluY SINE Alu 1 303 -8 252 333 34 0 chr4 6165304 6165421 -196162926 + MER103 DNA DNA 31 151 -15 184 239 130 33 chr4 6165560 6165652 -196162695 - MIR SINE MIR -78 130 30 22 0 0 0 chr4 6165893 6165915 -196162432 + AT_rich Low_complexity Low_complexity 1 22 0 2469 72 0 0 chr4 6166013 6166304 -196162043 + AluSx SINE Alu 1 291 -21 271 252 216 18 chr4 6166462 6166573 -196161774 + MIR SINE MIR 18 150 -112 266 320 105 63 chr4 6166706 6166942 -196161405 - L2 LINE L2 -75 3197 2941 2312 109 87 32 chr4 6166942 6167346 -196161001 - MSTA LTR MaLR 0 428 3 266 320 105 63 chr4 6167346 6167443 -196160904 - L2 LINE L2 -331 2941 2850 442 283 25 6 chr4 6167668 6167827 -196160520 + L1ME LINE L1 5566 5727 -394 437 290 24 12 chr4 6168238 6168407 -196159940 + GA-rich Low_complexity Low_complexity 5 175 0 191 283 9 88 chr4 6169160 6169273 -196159074 - L2 LINE L2 -237 3035 2932 2492 74 0 3 chr4 6169479 6169775 -196158572 + AluY SINE Alu 1 295 -16 353 232 181 36 chr4 6171640 6171827 -196156520 - MIR SINE MIR -11 251 34 199 189 0 0 chr4 6171900 6171937 -196156410 + MIR SINE MIR 112 148 -114 301 265 225 0 chr4 6172259 6172410 -196155937 + MIR SINE MIR 40 224 -38 281 308 0 33 chr4 6172633 6172724 -196155623 + L2 LINE L2 2673 2760 -554 426 278 49 0 chr4 6173106 6173250 -196155097 + MIR SINE MIR 73 223 -39 244 231 0 0 chr4 6173464 6173516 -196154831 + A-rich Low_complexity Low_complexity 4 55 0 542 286 164 8 chr4 6173531 6173793 -196154554 + L3 LINE CR1 1163 1465 -112 340 333 84 37 chr4 6175785 6176058 -196152289 + MLT1I LTR MaLR 98 383 -26 673 257 53 57 chr4 6176087 6176332 -196152015 - MIR SINE MIR 0 262 19 365 318 20 27 chr4 6176398 6176546 -196151801 - MIR3 SINE MIR -15 193 47 360 119 0 0 chr4 6176831 6176890 -196151457 + (TTCC)n Simple_repeat Simple_repeat 4 62 0 2256 97 7 3 chr4 6176901 6177189 -196151158 - AluSx SINE Alu -3 309 21 225 0 0 0 chr4 6177264 6177289 -196151058 + (CA)n Simple_repeat Simple_repeat 2 26 0 311 222 8 0 chr4 6177987 6178104 -196150243 + (CA)n Simple_repeat Simple_repeat 2 119 0 226 325 40 53 chr4 6178148 6178299 -196150048 + MIR SINE MIR 44 192 -70 222 191 0 0 chr4 6178893 6178935 -196149412 - MIR SINE MIR -113 149 108 27 0 0 0 chr4 6181805 6181832 -196146515 + GC_rich Low_complexity Low_complexity 1 27 0 225 132 57 19 chr4 6182225 6182278 -196146069 + (CCCCG)n Simple_repeat Simple_repeat 2 56 0 292 300 22 11 chr4 6183513 6183603 -196144744 - MIR3 SINE MIR -50 158 68 207 294 0 0 chr4 6184525 6184576 -196143771 - MIR SINE MIR -61 147 97 456 19 0 0 chr4 6184773 6184826 -196143521 + (CA)n Simple_repeat Simple_repeat 1 53 0 219 267 0 0 chr4 6185473 6185533 -196142814 + MIR SINE MIR 30 89 -119 195 255 21 0 chr4 6185744 6185791 -196142556 + L2 LINE L2 3266 3313 0 1244 154 25 57 chr4 6186394 6186674 -196141673 - MER46B DNA MER2_type -90 146 1 1708 191 49 47 chr4 6186745 6187136 -196141211 + MLT1C LTR MaLR 1 395 -72 2046 143 13 3 chr4 6187136 6187437 -196140910 - AluJo SINE Alu -4 308 5 1708 191 49 47 chr4 6187437 6187511 -196140836 + MLT1C LTR MaLR 395 467 0 237 279 0 0 chr4 6187911 6187972 -196140375 + MIR SINE MIR 87 147 -115 890 205 93 0 chr4 6189944 6190159 -196138188 + L1MCa LINE L1 19 253 -6173 3361 167 107 30 chr4 6190163 6190595 -196137752 + L1MCa LINE L1 777 1174 -5252 1598 204 42 0 chr4 6190595 6190879 -196137468 + AluJb SINE Alu 1 296 -16 3361 167 107 30 chr4 6190879 6191151 -196137196 + L1MCa LINE L1 1174 1424 -5002 2046 148 0 0 chr4 6191151 6191442 -196136905 + AluSx SINE Alu 1 291 -21 3361 167 107 30 chr4 6191442 6192063 -196136284 + L1MCa LINE L1 1424 2334 -4092 2344 110 0 0 chr4 6192063 6192371 -196135976 + AluSx SINE Alu 1 308 -4 3361 167 107 30 chr4 6192371 6192586 -196135761 + L1MCa LINE L1 2334 2531 -3895 22 0 0 0 chr4 6192726 6192748 -196135599 + AT_rich Low_complexity Low_complexity 1 22 0 1922 131 40 35 chr4 6193697 6194070 -196134277 + THE1C LTR MaLR 1 375 0 264 314 98 89 chr4 6194127 6194442 -196133905 + L2 LINE L2 2950 3267 -5 1942 163 31 16 chr4 6194835 6195216 -196133131 + MLT1B LTR MaLR 4 390 0 2083 123 0 0 chr4 6195668 6195944 -196132403 + AluSx SINE Alu 1 276 -36 180 77 0 0 chr4 6195945 6195971 -196132376 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 238 330 62 9 chr4 6196177 6196289 -196132058 - MIR SINE MIR -67 195 78 249 81 0 0 chr4 6196638 6196675 -196131672 - MIR SINE MIR -65 143 107 244 229 29 14 chr4 6197374 6197444 -196130903 + LTR67 LTR ERVL 100 170 -387 2298 100 37 0 chr4 6197941 6198241 -196130106 - AluSx SINE Alu -1 311 1 510 217 0 25 chr4 6198434 6198554 -196129793 + MIR SINE MIR 49 165 -97 375 23 0 0 chr4 6198760 6198804 -196129543 + (CA)n Simple_repeat Simple_repeat 2 45 0 1625 201 69 38 chr4 6199014 6199184 -196129163 + MLT1C LTR MaLR 7 170 -297 2316 99 0 0 chr4 6199184 6199498 -196128849 + AluSg SINE Alu 1 314 0 1625 201 69 38 chr4 6199498 6199772 -196128575 + MLT1C LTR MaLR 170 467 0 213 121 0 0 chr4 6199928 6199961 -196128386 + (T)n Simple_repeat Simple_repeat 1 33 0 313 311 0 80 chr4 6200606 6200756 -196127591 - MIR SINE MIR -61 147 12 2271 117 0 13 chr4 6200848 6201164 -196127183 + AluSx SINE Alu 1 312 0 368 283 177 34 chr4 6201597 6201834 -196126513 - L1ME4a LINE L1 -1 6120 5850 185 222 16 48 chr4 6202517 6202580 -196125767 - MIR3 SINE MIR -54 154 94 445 314 106 0 chr4 6202721 6202909 -196125438 + MIR SINE MIR 28 235 -27 795 237 40 0 chr4 6203299 6203476 -196124871 + MER5A DNA MER1_type 1 184 -5 3540 218 26 5 chr4 6203961 6204774 -196123573 + L1M4 LINE L1 3512 4341 -1805 197 291 45 64 chr4 6205799 6205909 -196122438 - MIR SINE MIR -71 191 84 278 360 128 6 chr4 6206387 6206551 -196121796 - L3 LINE CR1 -3 1574 1391 773 247 67 9 chr4 6206645 6206868 -196121479 - MIR SINE MIR -15 247 12 215 374 17 35 chr4 6207866 6207981 -196120366 - MIR SINE MIR -62 146 34 2103 206 62 12 chr4 6208026 6208507 -196119840 + MLT1D LTR MaLR 1 505 0 297 300 120 0 chr4 6209545 6209645 -196118702 - MIR SINE MIR -132 130 19 618 247 24 12 chr4 6210806 6210976 -196117371 - MER5B DNA MER1_type -3 175 4 412 220 31 101 chr4 6211760 6211919 -196116428 + MIR3 SINE MIR 53 200 -8 302 328 72 0 chr4 6212435 6212560 -196115787 - MIR SINE MIR -97 165 32 378 268 9 36 chr4 6213072 6213184 -196115163 + L2 LINE L2 3205 3313 0 209 344 158 23 chr4 6213329 6213544 -196114803 - MIR SINE MIR -14 248 5 297 374 0 39 chr4 6213607 6213762 -196114585 - MIR SINE MIR -2 260 112 371 316 12 65 chr4 6213851 6214036 -196114311 - MIR3 SINE MIR -54 154 12 265 296 35 35 chr4 6214023 6214138 -196114209 + MIR3 SINE MIR 48 162 -46 * 526 226 57 31 chr4 6214246 6214405 -196113942 - Charlie8 DNA MER1_type -2183 234 72 2555 164 15 4 chr4 6214411 6214882 -196113465 + L1MB3 LINE L1 5677 6152 -31 246 159 0 0 chr4 6214893 6214937 -196113410 - L1MB3 LINE L1 -33 6150 6107 245 289 24 24 chr4 6214940 6215023 -196113324 - Charlie8 DNA MER1_type -2322 95 13 299 283 142 0 chr4 6215615 6215728 -196112619 - MIR SINE MIR -63 145 17 331 314 59 13 chr4 6216099 6216252 -196112095 - MIR SINE MIR -41 221 62 285 235 31 41 chr4 6216789 6216887 -196111460 + Charlie4 DNA MER1_type 1860 1956 -5 251 306 71 66 chr4 6216930 6217126 -196111221 - L2 LINE L2 0 3272 3076 209 267 307 0 chr4 6217398 6217499 -196110848 - L2 LINE L2 -225 3047 2916 422 276 41 41 chr4 6217971 6218141 -196110206 - MER5A DNA MER1_type 0 189 20 380 305 65 5 chr4 6218538 6218738 -196109609 + L1MEd LINE L1 848 1059 -5060 576 259 45 77 chr4 6218750 6218970 -196109377 - L2 LINE L2 -225 3088 2876 329 294 73 0 chr4 6218976 6219112 -196109235 + L3 LINE CR1 1257 1402 -175 252 59 0 0 chr4 6219112 6219146 -196109201 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 416 291 86 32 chr4 6219159 6219379 -196108968 - L2 LINE L2 0 3313 3082 190 244 0 24 chr4 6219575 6219616 -196108731 - L2 LINE L2 -112 3160 3121 364 322 94 31 chr4 6220007 6220327 -196108020 + L2 LINE L2 2557 2896 -418 4282 173 9 0 chr4 6220409 6221203 -196107144 - L1 LINE L1 -809 5337 4537 2504 61 13 13 chr4 6221982 6222293 -196106054 - AluY SINE Alu 0 311 1 232 411 83 11 chr4 6222314 6222494 -196105853 - L3 LINE CR1 -30 1547 1355 279 114 0 0 chr4 6222777 6222830 -196105517 + MER63A DNA MER1_type 1 53 -157 2364 89 0 10 chr4 6222855 6223159 -196105188 + AluSc SINE Alu 6 306 -3 484 211 122 58 chr4 6223183 6223339 -196105008 + MER63A DNA MER1_type 44 209 -1 342 0 0 0 chr4 6223345 6223383 -196104964 + (TG)n Simple_repeat Simple_repeat 2 39 0 216 67 0 0 chr4 6223406 6223436 -196104911 + (TGAA)n Simple_repeat Simple_repeat 2 31 0 2010 232 48 32 chr4 6223639 6224207 -196104140 - MER74B LTR ERVL 0 622 46 608 181 29 0 chr4 6224213 6224318 -196104029 + MIR SINE MIR 76 183 -79 197 345 0 0 chr4 6224413 6224471 -196103876 + L2 LINE L2 3240 3297 -16 401 287 0 0 chr4 6224927 6225056 -196103291 + L1ME4a LINE L1 5581 5709 -412 361 241 102 91 chr4 6225104 6225294 -196103053 + L1ME4a LINE L1 5836 6031 -90 2482 60 17 0 chr4 6225294 6225593 -196102754 - AluY SINE Alu -7 304 1 361 241 102 91 chr4 6225593 6225667 -196102680 + L1ME4a LINE L1 6031 6103 -18 189 400 0 0 chr4 6226168 6226243 -196102104 + L2 LINE L2 2639 2713 -601 325 327 127 22 chr4 6226613 6226888 -196101459 + MLT1L LTR MaLR 312 615 0 481 246 8 0 chr4 6227664 6227798 -196100549 - LTR16C LTR ERVL 0 491 357 316 203 14 29 chr4 6228221 6228290 -196100057 - MIR SINE MIR -108 154 87 2406 90 30 0 chr4 6228492 6228792 -196099555 - AluSc SINE Alu 0 309 1 366 331 23 39 chr4 6229368 6229498 -196098849 - MIR SINE MIR -118 144 17 471 256 40 45 chr4 6229879 6230055 -196098292 + MER5B DNA MER1_type 4 178 0 249 191 0 0 chr4 6230076 6230123 -196098224 - MIR SINE MIR -71 137 91 1556 171 62 50 chr4 6230940 6231279 -196097068 - MER2 DNA MER2_type 0 344 2 580 306 153 14 chr4 6231300 6231522 -196096825 + MIR SINE MIR 9 261 -1 2306 110 3 0 chr4 6231565 6231865 -196096482 - AluSx SINE Alu -11 301 1 294 312 52 0 chr4 6233535 6233612 -196094735 - L2 LINE L2 -19 3253 3173 543 279 58 0 chr4 6234213 6234385 -196093962 - MIR SINE MIR -53 209 28 2100 153 38 28 chr4 6234827 6235375 -196092972 + MLT2A2 LTR ERVL 1 554 0 190 268 196 18 chr4 6236783 6236895 -196091452 - L2 LINE L2 -85 3187 3056 1606 246 19 49 chr4 6237244 6237715 -196090632 + L1MB5 LINE L1 5712 6168 -6 206 313 92 46 chr4 6237958 6238089 -196090258 - L2 LINE L2 0 3272 3136 1980 124 39 72 chr4 6238529 6238917 -196089430 + THE1C LTR MaLR 1 375 0 432 55 0 0 chr4 6239434 6239489 -196088858 + (CA)n Simple_repeat Simple_repeat 1 55 0 288 313 0 42 chr4 6240070 6240166 -196088181 + L2 LINE L2 3178 3269 -3 306 346 30 0 chr4 6240178 6240279 -196088068 - L1ME LINE L1 -320 5801 5698 326 244 13 0 chr4 6241276 6241354 -196086993 + MIR3 SINE MIR 107 185 -23 249 322 44 11 chr4 6241855 6241945 -196086402 + L2 LINE L2 3140 3232 -40 231 350 26 26 chr4 6242549 6242666 -196085681 - MIR SINE MIR -63 145 29 1556 172 0 23 chr4 6243566 6243827 -196084520 - AluJo SINE Alu -53 259 5 401 304 43 7 chr4 6243893 6244031 -196084316 + MIR SINE MIR 108 250 -12 310 248 9 29 chr4 6244976 6245081 -196083266 + GA-rich Low_complexity Low_complexity 4 106 0 297 243 90 5 chr4 6245193 6245314 -196083033 + MIR SINE MIR 94 227 -35 270 278 133 34 chr4 6245456 6245690 -196082657 + L2 LINE L2 2676 2932 -382 947 250 39 4 chr4 6245948 6246180 -196082167 + MIR SINE MIR 2 241 -21 384 293 230 11 chr4 6246351 6246525 -196081822 + L1MEd LINE L1 300 511 -5608 272 323 67 24 chr4 6246567 6246595 -196081752 + L1MEd LINE L1 652 677 -5442 2444 85 0 0 chr4 6246595 6246900 -196081447 + AluSg SINE Alu 1 305 -5 272 323 67 24 chr4 6246900 6247035 -196081312 + L1MEd LINE L1 677 822 -5297 328 221 167 135 chr4 6247063 6247285 -196081062 - MIR SINE MIR -5 257 29 364 275 76 72 chr4 6247291 6247373 -196080974 + L1MEd LINE L1 990 1070 -5240 2417 92 0 0 chr4 6247373 6247677 -196080670 + AluSq SINE Alu 5 308 -5 364 275 76 72 chr4 6247677 6248287 -196080060 + L1MEd LINE L1 1070 1734 -4576 1129 281 55 30 chr4 6248670 6249445 -196078902 + L1MEd LINE L1 2114 2908 -3221 277 317 79 30 chr4 6249637 6249738 -196078609 + MIR3 SINE MIR 65 170 -38 192 77 0 0 chr4 6249871 6249897 -196078450 + (T)n Simple_repeat Simple_repeat 1 26 0 2209 80 7 11 chr4 6250049 6250362 -196077985 + AluSq SINE Alu 1 312 0 2838 129 16 0 chr4 6250955 6251381 -196076966 + MER72 LTR ERV1 290 722 0 1508 245 55 52 chr4 6251673 6252216 -196076131 + MLT1H LTR MaLR 2 546 -3 747 313 9 8 chr4 6252255 6252501 -196075846 - MIR SINE MIR -1 261 16 212 305 29 38 chr4 6252638 6252743 -196075604 - L2 LINE L2 0 3272 3169 195 161 232 0 chr4 6252817 6252873 -196075474 - MIR SINE MIR -113 149 81 399 286 67 37 chr4 6253371 6253600 -196074747 + MIR SINE MIR 4 237 -25 673 229 202 0 chr4 6253646 6253864 -196074483 - MIR SINE MIR 0 262 1 272 264 74 47 chr4 6253946 6254094 -196074253 + L1ME4a LINE L1 5967 6118 -3 381 256 31 56 chr4 6254571 6254731 -196073616 + MIR SINE MIR 57 212 -50 340 326 0 0 chr4 6256025 6256123 -196072224 - MIR SINE MIR -119 143 46 238 250 44 0 chr4 6256667 6256735 -196071612 - MIR3 SINE MIR -48 160 90 537 291 58 5 chr4 6256959 6257165 -196071182 + LTR33 LTR ERVL 50 266 -255 2976 128 22 27 chr4 6257474 6258032 -196070315 + LTR10E LTR ERV1 11 609 0 621 244 51 97 chr4 6259343 6259472 -196068875 + L1MC5 LINE L1 7120 7253 -708 2314 123 0 0 chr4 6259472 6259604 -196068743 + AluSx SINE Alu 1 132 -180 2225 104 7 3 chr4 6259604 6259901 -196068446 + AluSc SINE Alu 1 298 -11 2314 123 0 0 chr4 6259901 6260077 -196068270 + AluSx SINE Alu 131 309 -3 621 244 51 97 chr4 6260077 6260378 -196067969 + L1MC5 LINE L1 7253 7530 -431 1732 182 6 88 chr4 6260380 6260794 -196067553 + L1MB3 LINE L1 5744 6190 7 2391 99 0 7 chr4 6260794 6261096 -196067251 + AluSq SINE Alu 1 300 -13 1732 182 6 88 chr4 6261096 6261126 -196067221 + L1MB3 LINE L1 6190 6150 -33 348 67 34 157 chr4 6261126 6261215 -196067132 + MADE1 DNA Mariner 2 79 -1 1732 182 6 88 chr4 6261215 6261246 -196067101 + L1MB3 LINE L1 6149 6181 -2 720 257 124 40 chr4 6261246 6261600 -196066747 + L1MC5 LINE L1 7533 7916 -45 191 219 45 6 chr4 6261618 6261695 -196066652 + MIR SINE MIR 49 115 -93 201 303 15 0 chr4 6261884 6261950 -196066397 + L2 LINE L2 3231 3297 -16 348 83 0 0 chr4 6261958 6262006 -196066341 + (TGAA)n Simple_repeat Simple_repeat 2 49 0 341 245 51 10 chr4 6262472 6262570 -196065777 - MIR SINE MIR -75 133 32 325 247 12 0 chr4 6263169 6263250 -196065097 - L2 LINE L2 -6 3307 3226 319 73 36 0 chr4 6263320 6263375 -196064972 + (TAGA)n Simple_repeat Simple_repeat 2 58 0 291 217 58 92 chr4 6264294 6264414 -196063933 + MLT1H LTR MaLR 421 536 -13 239 235 0 0 chr4 6264434 6264485 -196063862 - MIR SINE MIR -145 117 67 237 258 48 16 chr4 6264885 6264947 -196063400 - MER91A DNA MER1_type -10 186 123 324 297 195 0 chr4 6264986 6265114 -196063233 - MER91A DNA MER1_type -43 153 1 329 301 75 8 chr4 6266275 6266408 -196061939 - MIR SINE MIR -21 241 100 303 302 35 59 chr4 6266970 6267139 -196061208 + L1MC/D LINE L1 5494 5658 -2150 381 193 36 0 chr4 6267139 6267222 -196061125 - Tigger3(Golem) DNA MER2_type 0 3029 2944 390 252 109 0 chr4 6267328 6267475 -196060872 + L2 LINE L2 2928 3090 -182 360 206 63 48 chr4 6268944 6269070 -196059277 + L1MD3 LINE L1 7853 7980 -15 209 354 135 25 chr4 6269488 6269807 -196058540 + L2 LINE L2 2918 3271 -1 1092 176 39 5 chr4 6269991 6270196 -196058151 - MER20 DNA MER1_type -7 212 1 185 384 73 33 chr4 6270806 6270957 -196057390 - MIR SINE MIR 0 262 106 254 315 19 94 chr4 6271654 6271867 -196056480 - L2 LINE L2 -80 3192 2996 940 81 0 0 chr4 6271967 6272078 -196056269 + AluSx SINE Alu 13 123 -190 1362 126 0 0 chr4 6272233 6272415 -196055932 + AluSx SINE Alu 112 293 -19 266 273 13 0 chr4 6272436 6272513 -196055834 - MER116 DNA Mariner -1 79 2 866 264 35 9 chr4 6272514 6272741 -196055606 - MIR SINE MIR -3 259 27 228 313 15 0 chr4 6273253 6273320 -196055027 - L2 LINE L2 -4 3268 3201 457 311 79 6 chr4 6273702 6273879 -196054468 + MIR SINE MIR 10 199 -63 2288 112 23 0 chr4 6274079 6274384 -196053963 - AluSx SINE Alu 0 312 1 262 342 0 52 chr4 6274540 6274695 -196053652 - MIR SINE MIR 0 262 116 334 301 128 15 chr4 6274816 6275012 -196053335 - MIR SINE MIR -19 243 26 2532 79 0 0 chr4 6275577 6275880 -196052467 + AluSg SINE Alu 1 303 -7 199 315 33 22 chr4 6276626 6276718 -196051629 - MIR3 SINE MIR -49 159 67 266 284 68 0 chr4 6276906 6276980 -196051367 - MIR SINE MIR -111 151 73 240 70 23 0 chr4 6277168 6277211 -196051136 + L1PB1 LINE L1 6107 6150 -1 2158 127 3 0 chr4 6277283 6277590 -196050757 + AluSx SINE Alu 1 308 -4 2285 90 14 0 chr4 6277749 6278037 -196050310 - AluSc SINE Alu -17 292 1 303 297 55 21 chr4 6278164 6278309 -196050038 - L1ME LINE L1 -380 5741 5592 370 336 0 15 chr4 6279253 6279390 -196048957 + L2 LINE L2 2949 3083 -189 259 330 43 27 chr4 6279589 6279774 -196048573 + L2 LINE L2 2864 3051 -221 411 380 22 11 chr4 6280026 6280210 -196048137 + MIR SINE MIR 7 192 -70 255 276 20 51 chr4 6280703 6280801 -196047546 - MIR SINE MIR -8 254 160 2450 75 7 0 chr4 6283098 6283392 -196044955 - AluSc SINE Alu -13 296 1 259 303 65 45 chr4 6283526 6283681 -196044666 + MIR3 SINE MIR 14 171 -37 289 234 70 16 chr4 6283937 6284065 -196044282 + MIR3 SINE MIR 3 137 -71 196 330 70 51 chr4 6284107 6284380 -196043967 - L2 LINE L2 -1 3271 2994 209 253 209 0 chr4 6285180 6285271 -196043076 + MIR SINE MIR 36 145 -63 263 254 160 41 chr4 6285566 6285735 -196042612 - MIR3 SINE MIR -17 191 3 2554 86 0 3 chr4 6285946 6286259 -196042088 + AluSx SINE Alu 1 312 0 1652 136 93 4 chr4 6286585 6286878 -196041469 - AluJb SINE Alu 0 316 1 2492 68 0 34 chr4 6287253 6287575 -196040772 + AluY SINE Alu 1 311 0 736 264 50 21 chr4 6287658 6287900 -196040447 + MIR SINE MIR 14 262 0 859 279 119 22 chr4 6287904 6288356 -196039991 + MLT1H1 LTR MaLR 5 500 -55 245 371 19 9 chr4 6288595 6288808 -196039539 - L1MC/D LINE L1 -1959 5849 5635 1266 195 19 11 chr4 6288955 6289318 -196039029 + L1M4 LINE L1 5188 5556 -628 504 260 82 32 chr4 6289341 6289582 -196038765 + L1ME LINE L1 1003 1316 -5056 324 306 46 31 chr4 6289667 6289863 -196038484 + L1ME LINE L1 5477 5675 -446 506 363 46 16 chr4 6290051 6290547 -196037800 + L1MC4a LINE L1 5400 5910 -1898 255 121 35 17 chr4 6290644 6290702 -196037645 - L1MD1 LINE L1 -10 6232 6174 297 133 0 0 chr4 6290716 6290761 -196037586 - Alu SINE Alu -13 289 245 755 244 45 25 chr4 6290761 6290962 -196037385 - L1MD2 LINE L1 -76 6283 6079 220 255 0 0 chr4 6292159 6292210 -196036137 + (CA)n Simple_repeat Simple_repeat 2 52 0 21 36 0 0 chr4 6292217 6292245 -196036102 + AT_rich Low_complexity Low_complexity 1 28 0 2501 83 3 0 chr4 6292492 6292793 -196035554 - AluSp SINE Alu -11 302 1 635 250 38 19 chr4 6293656 6293816 -196034531 + MER63 DNA MER1_type 1 789 -47 247 319 14 0 chr4 6294065 6294137 -196034210 - L2 LINE L2 -522 2792 2720 779 272 92 10 chr4 6294250 6294625 -196033722 + L2 LINE L2 2624 3040 -273 597 318 68 58 chr4 6294653 6296777 -196031570 + L1MEc LINE L1 94 2246 -4150 2139 138 0 3 chr4 6296777 6297081 -196031266 + AluSx SINE Alu 3 305 -7 597 318 68 58 chr4 6297081 6297134 -196031213 + L1MEc LINE L1 2246 2297 -4099 * 1120 263 45 12 chr4 6297109 6297535 -196030812 + L1MEc LINE L1 2561 3000 -3215 2490 87 0 0 chr4 6297628 6297926 -196030421 - AluSg SINE Alu -12 298 1 667 226 99 31 chr4 6298026 6298218 -196030129 + L1MEc LINE L1 2987 3207 -3008 2266 113 3 3 chr4 6298218 6298528 -196029819 + AluSx SINE Alu 1 310 -2 667 226 99 31 chr4 6298528 6298627 -196029720 + L1MEc LINE L1 3207 3298 -2917 280 242 19 12 chr4 6298641 6298802 -196029545 + GA-rich Low_complexity Low_complexity 1 162 0 186 296 43 26 chr4 6298918 6299033 -196029314 - MIR SINE MIR -126 136 20 462 311 37 47 chr4 6299185 6299375 -196028972 + MIR SINE MIR 10 197 -65 855 310 113 25 chr4 6301980 6302307 -196026040 + L2 LINE L2 2837 3213 -100 608 271 155 0 chr4 6302307 6302488 -196025859 - MER3 DNA MER1_type 0 209 1 855 310 113 25 chr4 6302488 6302595 -196025752 + L2 LINE L2 3213 3309 -4 346 191 0 0 chr4 6303119 6303182 -196025165 + MIR SINE MIR 83 145 -117 192 290 97 0 chr4 6303392 6303485 -196024862 - MIR SINE MIR -74 134 33 196 335 110 19 chr4 6303530 6303685 -196024662 + MIR SINE MIR 70 238 -24 208 243 32 55 chr4 6304234 6304338 -196024009 + MIR SINE MIR 44 146 -62 2163 125 0 0 chr4 6304624 6304936 -196023411 + AluSx SINE Alu 1 312 0 23 0 0 0 chr4 6304936 6304959 -196023388 + AT_rich Low_complexity Low_complexity 1 23 0 288 341 12 54 chr4 6305212 6305379 -196022968 + MIR SINE MIR 36 195 -67 198 156 0 0 chr4 6305669 6305701 -196022646 - MIR SINE MIR -67 141 110 2006 114 13 13 chr4 6305881 6306196 -196022151 + MER1B DNA MER1_type 25 339 0 396 0 0 0 chr4 6306564 6306608 -196021739 + (CA)n Simple_repeat Simple_repeat 2 45 0 276 301 93 83 chr4 6306648 6306841 -196021506 + L2 LINE L2 3077 3271 -1 366 268 62 10 chr4 6306884 6306981 -196021366 - L2 LINE L2 -3 3310 3209 203 290 124 51 chr4 6307520 6307737 -196020610 + L2 LINE L2 2849 3081 -191 209 364 10 10 chr4 6307787 6307886 -196020461 + MER5B DNA MER1_type 5 103 -75 324 287 32 25 chr4 6308060 6308217 -196020130 + GA-rich Low_complexity Low_complexity 2 159 0 385 259 35 9 chr4 6308349 6308465 -196019882 - L2 LINE L2 -8 3305 3187 401 347 31 26 chr4 6308472 6308665 -196019682 - MIR3 SINE MIR -14 194 1 419 321 71 43 chr4 6308734 6309242 -196019105 - L1ME4a LINE L1 -59 6062 5541 371 324 48 53 chr4 6309273 6309480 -196018867 - L1ME4a LINE L1 -2330 5478 5273 184 351 168 15 chr4 6309711 6309913 -196018434 + L2 LINE L2 3004 3236 -36 415 225 116 29 chr4 6310332 6310470 -196017877 + MIR SINE MIR 34 183 -79 366 214 0 12 chr4 6311938 6312022 -196016325 + MLT1A1 LTR MaLR 1 83 -282 1626 79 19 5 chr4 6312241 6312457 -196015890 - AluSg/x SINE Alu -11 299 81 494 289 75 6 chr4 6312758 6312917 -196015430 - L2 LINE L2 -1 3312 3143 1559 190 91 23 chr4 6313113 6313544 -196014803 + MLT1C LTR MaLR 6 465 -2 323 318 70 0 chr4 6313926 6314055 -196014292 + MIR SINE MIR 71 208 -54 958 148 9 7 chr4 6314498 6314748 -196013599 + (ATGGTG)n Simple_repeat Simple_repeat 1 427 0 1006 137 12 2 chr4 6314748 6315170 -196013177 + (ATG)n Simple_repeat Simple_repeat 1 604 0 328 301 6 25 chr4 6315899 6316062 -196012285 + GA-rich Low_complexity Low_complexity 2 161 0 831 75 0 0 chr4 6316130 6316250 -196012097 + (TCCA)n Simple_repeat Simple_repeat 1 120 0 382 287 16 25 chr4 6316250 6316372 -196011975 - L2 LINE L2 -13 3300 3180 372 248 90 8 chr4 6317233 6317366 -196010981 + MLT1J2 LTR MaLR 67 210 -240 404 211 22 0 chr4 6317458 6317548 -196010799 + MLT1I LTR MaLR 317 408 -1 231 342 40 20 chr4 6317729 6317878 -196010469 + L2 LINE L2 2636 2787 -527 241 250 65 9 chr4 6318139 6318247 -196010100 + MER103 DNA DNA 6 119 -47 189 238 0 0 chr4 6318334 6318376 -196009971 - MIR SINE MIR -55 153 112 477 264 48 0 chr4 6318698 6318823 -196009524 - MIR SINE MIR -36 226 96 963 213 54 77 chr4 6318988 6319298 -196009049 + MLT1A1 LTR MaLR 1 304 -61 1664 171 0 49 chr4 6319298 6319603 -196008744 - AluJb SINE Alu -22 290 1 963 213 54 77 chr4 6319603 6319645 -196008702 + MLT1A1 LTR MaLR 304 345 -20 436 306 19 32 chr4 6320192 6320349 -196007998 + MIR SINE MIR 9 163 -99 236 360 56 8 chr4 6320460 6320585 -196007762 + L2 LINE L2 3103 3233 -39 613 219 27 27 chr4 6320920 6321066 -196007281 + L2 LINE L2 3167 3312 -1 427 282 63 14 chr4 6322015 6322157 -196006190 - MER5B DNA MER1_type -16 162 14 566 208 101 0 chr4 6322178 6322327 -196006020 - MER5A DNA MER1_type 0 189 26 193 331 39 47 chr4 6322306 6322433 -196005914 - MIR SINE MIR -96 166 41 * 410 288 88 12 chr4 6322410 6322580 -196005767 + MIR SINE MIR 80 262 0 180 367 60 60 chr4 6322616 6322815 -196005532 + L2 LINE L2 3032 3230 -42 337 280 150 24 chr4 6323288 6323495 -196004852 + L2 LINE L2 2553 2785 -529 264 308 98 49 chr4 6323492 6323778 -196004569 + L2 LINE L2 2921 3220 -52 * 457 309 53 0 chr4 6324185 6324337 -196004010 + MIR SINE MIR 30 189 -73 553 172 15 20 chr4 6324446 6324838 -196003509 + CT-rich Low_complexity Low_complexity 1 390 0 1177 188 64 38 chr4 6324838 6325104 -196003243 - AluJb SINE Alu -39 273 1 267 278 121 52 chr4 6325160 6325333 -196003014 - MIR3 SINE MIR -20 188 4 23 92 0 0 chr4 6326642 6326707 -196001640 + GC_rich Low_complexity Low_complexity 1 65 0 27 85 0 11 chr4 6326885 6326954 -196001393 + GC_rich Low_complexity Low_complexity 1 70 -23 198 71 0 0 chr4 6326954 6326982 -196001365 + (CTG)n Simple_repeat Simple_repeat 1 28 0 27 85 0 11 chr4 6326982 6327006 -196001341 + GC_rich Low_complexity Low_complexity 70 93 0 198 0 0 0 chr4 6329378 6329400 -195998947 + (TG)n Simple_repeat Simple_repeat 2 23 0 292 74 0 37 chr4 6330804 6330858 -195997489 + (TCCCC)n Simple_repeat Simple_repeat 2 53 0 2375 158 21 8 chr4 6331179 6331564 -195996783 - MLT1B LTR MaLR 0 390 1 240 296 83 15 chr4 6331704 6331836 -195996511 - L2 LINE L2 -213 3059 2919 714 319 32 0 chr4 6332006 6332222 -195996125 + MIR SINE MIR 28 250 -12 214 360 45 0 chr4 6334289 6334400 -195993947 + L3 LINE CR1 1415 1530 -47 352 250 11 22 chr4 6334644 6334736 -195993611 + MIR3 SINE MIR 109 199 -9 247 247 49 23 chr4 6334872 6334986 -195993361 + MIR SINE MIR 41 153 -62 330 301 204 28 chr4 6335162 6335481 -195992866 - L2 LINE L2 -20 3252 2878 491 377 20 16 chr4 6337095 6337339 -195991008 - MIR SINE MIR 0 262 18 1990 121 28 0 chr4 6337352 6337634 -195990713 + AluSx SINE Alu 1 290 -22 633 99 0 0 chr4 6337648 6337729 -195990618 + AluSg/x SINE Alu 210 290 -22 633 99 0 0 chr4 6337743 6337824 -195990523 + AluSg/x SINE Alu 210 290 -22 3163 176 15 19 chr4 6337844 6338422 -195989925 - L1MB3 LINE L1 0 6183 5606 1857 164 0 7 chr4 6338422 6338720 -195989627 - AluJo SINE Alu -16 296 1 3163 176 15 19 chr4 6338720 6338736 -195989611 - L1MB3 LINE L1 -577 5606 5591 434 218 32 51 chr4 6339475 6339631 -195988716 - Charlie4 DNA MER1_type 0 1961 1809 893 234 40 4 chr4 6339663 6339915 -195988432 - Charlie4 DNA MER1_type -1667 294 34 2258 96 0 10 chr4 6339963 6340277 -195988070 + AluSx SINE Alu 1 311 -1 320 239 103 60 chr4 6340419 6340536 -195987811 + L2 LINE L2 3175 3296 -17 222 37 0 0 chr4 6341031 6341058 -195987289 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 235 321 12 0 chr4 6342642 6342723 -195985624 - L2 LINE L2 -1 3271 3190 216 0 0 0 chr4 6342838 6342862 -195985485 + (GCTTG)n Simple_repeat Simple_repeat 3 26 0 185 400 94 12 chr4 6343233 6343403 -195984944 + MIR SINE MIR 60 243 -19 1677 166 11 0 chr4 6344504 6344781 -195983566 - AluJo SINE Alu -30 282 3 191 310 186 21 chr4 6344843 6344988 -195983359 + MIR SINE MIR 57 225 -37 207 69 0 0 chr4 6345416 6345445 -195982902 + (GGGA)n Simple_repeat Simple_repeat 2 30 0 1980 109 60 0 chr4 6345587 6345871 -195982476 - AluSx SINE Alu -11 301 1 867 200 23 36 chr4 6346565 6346785 -195981562 - MLT1K LTR MaLR 0 588 372 361 269 31 8 chr4 6346855 6346985 -195981362 - MLT1K LTR MaLR -331 257 125 412 260 32 8 chr4 6347851 6347974 -195980373 - MIR SINE MIR -63 145 20 1664 207 102 8 chr4 6348363 6348725 -195979622 + MSTD LTR MaLR 1 396 0 250 333 0 0 chr4 6348849 6348918 -195979429 - L3 LINE CR1 -101 1476 1408 4400 127 44 83 chr4 6349137 6350152 -195978195 + pTR5 LTR ERV1 729 2025 -413 364 235 10 0 chr4 6350152 6350250 -195978097 + LTR30 LTR ERV1 544 642 -80 1229 98 57 0 chr4 6350251 6350445 -195977902 + LTR12 LTR ERV1 377 581 -133 1860 214 110 2 chr4 6350591 6351044 -195977303 - MLT1D LTR MaLR 0 505 4 331 264 104 57 chr4 6353078 6353290 -195975057 + L2 LINE L2 2747 2968 -346 270 300 25 0 chr4 6353568 6353648 -195974699 - MER5B DNA MER1_type -43 135 54 2568 90 33 11 chr4 6353667 6354034 -195974313 - THE1C LTR MaLR 0 375 1 219 315 41 68 chr4 6355464 6355610 -195972737 - MER5A DNA MER1_type -1 188 47 * 232 287 52 73 chr4 6355486 6355622 -195972725 + MER5A DNA MER1_type 35 167 -22 392 323 138 4 chr4 6355823 6356055 -195972292 - L2 LINE L2 -9 3263 3001 413 300 45 35 chr4 6356056 6356256 -195972091 - L2 LINE L2 -4 3309 3108 1478 246 130 6 chr4 6356367 6356874 -195971473 + L1MB8 LINE L1 5603 6172 -6 490 367 72 30 chr4 6357509 6357537 -195970810 - L1ME4a LINE L1 -196 5925 5900 237 33 0 0 chr4 6357537 6357567 -195970780 + (CA)n Simple_repeat Simple_repeat 1 30 0 490 367 72 30 chr4 6357567 6357843 -195970504 - L1ME4a LINE L1 -221 5900 5608 231 297 148 16 chr4 6358063 6358191 -195970156 + MIR SINE MIR 28 172 -90 871 135 135 6 chr4 6358777 6358955 -195969392 - MSTA LTR MaLR -227 201 1 257 333 0 0 chr4 6359278 6359362 -195968985 + L2 LINE L2 2987 3070 -202 289 304 72 16 chr4 6359495 6359620 -195968727 + L2 LINE L2 3134 3265 -7 638 304 65 0 chr4 6360016 6360263 -195968084 - MLT1G LTR MaLR -316 274 12 318 292 205 11 chr4 6360388 6360573 -195967774 - MIR SINE MIR -8 254 34 1335 196 108 25 chr4 6362260 6362613 -195965734 - MLT1B LTR MaLR -8 382 1 307 130 0 14 chr4 6365091 6365152 -195963195 - MLT2C1 LTR ERVL 0 397 350 1262 205 28 75 chr4 6365221 6365623 -195962724 - MLT2D LTR ERVL -40 480 1 390 91 0 0 chr4 6365671 6365726 -195962621 + (TCCA)n Simple_repeat Simple_repeat 4 58 0 195 260 20 0 chr4 6365729 6365779 -195962568 - L2 LINE L2 -1 3312 3262 206 297 55 61 chr4 6365836 6366001 -195962346 - L2 LINE L2 -162 3110 2947 349 339 60 12 chr4 6367868 6368036 -195960311 + MIR SINE MIR 36 211 -51 247 176 20 0 chr4 6368054 6368105 -195960242 + MIR3 SINE MIR 105 156 -52 209 273 0 0 chr4 6368869 6368913 -195959434 + L2 LINE L2 3215 3258 -14 398 308 0 0 chr4 6369499 6369606 -195958741 - MIR SINE MIR -75 187 81 266 222 86 37 chr4 6370131 6370212 -195958135 - L2 LINE L2 -49 3264 3180 579 284 72 18 chr4 6370297 6370631 -195957716 - L2 LINE L2 -143 3170 2819 2156 121 3 0 chr4 6370736 6371042 -195957305 - AluSx SINE Alu -5 307 1 228 67 0 0 chr4 6371689 6371719 -195956628 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 285 196 0 0 chr4 6371832 6371883 -195956464 + MIR SINE MIR 104 154 -108 192 231 0 0 chr4 6372707 6372759 -195955588 + (TG)n Simple_repeat Simple_repeat 1 52 0 206 301 43 21 chr4 6374209 6374302 -195954045 + MIR SINE MIR 45 139 -69 341 148 0 0 chr4 6375028 6375089 -195953258 - MER53 DNA DNA -2 187 127 2126 85 0 14 chr4 6375089 6375390 -195952957 - AluSq SINE Alu 0 307 11 257 303 28 56 chr4 6375661 6375803 -195952544 - L2 LINE L2 -18 3295 3158 1640 164 20 30 chr4 6376359 6376658 -195951689 - AluJo SINE Alu -10 302 7 656 252 86 13 chr4 6377538 6377954 -195950393 - MER68 LTR ERV1 -9 553 72 413 294 94 25 chr4 6379624 6379784 -195948563 + MIR SINE MIR 20 190 -72 326 247 27 0 chr4 6380001 6380074 -195948273 - MIR SINE MIR -56 152 78 477 242 61 15 chr4 6382614 6382746 -195945601 + MIR SINE MIR 77 214 -48 241 298 70 9 chr4 6382791 6382905 -195945442 + MIR3 SINE MIR 83 203 -5 869 231 141 27 chr4 6383245 6383761 -195944586 - MLT1G LTR MaLR 0 577 19 532 291 51 15 chr4 6383778 6383974 -195944373 - MIR SINE MIR -12 250 48 2033 121 0 3 chr4 6384183 6384501 -195943846 + AluSx SINE Alu 1 317 0 368 296 38 8 chr4 6385190 6385322 -195943025 + MIR3 SINE MIR 22 157 -51 476 283 0 50 chr4 6385327 6385507 -195942840 - MLT1K LTR MaLR -16 572 402 264 342 51 25 chr4 6385734 6385892 -195942455 + MIR SINE MIR 5 166 -96 273 284 32 65 chr4 6385895 6386050 -195942297 - MLT1J LTR MaLR -231 280 131 310 247 26 13 chr4 6386681 6386758 -195941589 + L1ME4a LINE L1 6044 6121 0 310 281 9 53 chr4 6386860 6386974 -195941373 + MER94 DNA DNA 3 111 -23 3412 175 27 2 chr4 6388139 6388891 -195939456 + L1PB4 LINE L1 5381 6164 -2 219 366 59 0 chr4 6388954 6389055 -195939292 + MIR SINE MIR 75 181 -81 185 229 213 0 chr4 6389110 6389171 -195939176 - MER5A DNA MER1_type -84 105 32 249 257 0 0 chr4 6389233 6389303 -195939044 + (TG)n Simple_repeat Simple_repeat 1 70 0 316 278 201 16 chr4 6389363 6389557 -195938790 - L2 LINE L2 -42 3230 3001 431 176 0 0 chr4 6390412 6390486 -195937861 - MIR SINE MIR -110 152 79 256 175 140 0 chr4 6390910 6390967 -195937380 + MIR SINE MIR 81 145 -117 433 145 0 0 chr4 6391027 6391096 -195937251 - THE1C LTR MaLR 0 375 307 1951 148 0 13 chr4 6391096 6391406 -195936941 - AluSx SINE Alu -1 311 6 244 260 0 0 chr4 6391510 6391560 -195936787 + (TGG)n Simple_repeat Simple_repeat 2 51 0 218 342 0 0 chr4 6393666 6393742 -195934605 + L2 LINE L2 3197 3272 0 261 119 0 0 chr4 6393742 6393784 -195934563 + (TGAG)n Simple_repeat Simple_repeat 2 43 0 266 267 89 52 chr4 6395032 6395223 -195933124 + L2 LINE L2 3027 3224 -89 2016 229 53 58 chr4 6395326 6395963 -195932384 + L1ME1 LINE L1 5491 6126 -40 2297 95 0 3 chr4 6395963 6396268 -195932079 + AluSq SINE Alu 1 304 -9 2016 229 53 58 chr4 6396268 6396304 -195932043 + L1ME1 LINE L1 6126 6161 -5 260 146 0 139 chr4 6398361 6398512 -195929835 + (CTGGGG)n Simple_repeat Simple_repeat 3 132 0 545 308 31 39 chr4 6398680 6398940 -195929407 - Charlie8 DNA MER1_type -2159 258 1 240 86 0 0 chr4 6398967 6399002 -195929345 + (TTCA)n Simple_repeat Simple_repeat 3 37 0 215 262 16 16 chr4 6400679 6400740 -195927607 + MIR SINE MIR 81 141 -67 261 224 17 0 chr4 6400844 6400902 -195927445 + L2 LINE L2 2997 3055 -217 186 43 0 0 chr4 6401080 6401103 -195927244 + (TTCA)n Simple_repeat Simple_repeat 2 24 0 269 311 78 50 chr4 6401719 6401899 -195926448 + MIR SINE MIR 7 191 -71 309 269 54 0 chr4 6402314 6402407 -195925940 + MIR SINE MIR 104 201 -61 6845 58 29 2 chr4 6402457 6403482 -195924865 + L1PA7 LINE L1 5106 6153 -1 556 273 109 16 chr4 6403492 6403869 -195924478 - LTR33 LTR ERVL -65 456 45 315 295 11 11 chr4 6403955 6404050 -195924297 - MIR3 SINE MIR -49 159 65 198 0 0 0 chr4 6404413 6404435 -195923912 + (TTCA)n Simple_repeat Simple_repeat 3 24 0 223 254 0 17 chr4 6404510 6404569 -195923778 - MIR SINE MIR -56 152 95 211 327 84 0 chr4 6404837 6404944 -195923403 - MIR SINE MIR -145 117 2 458 317 49 22 chr4 6405654 6405837 -195922510 + MIR SINE MIR 2 189 -73 197 330 152 35 chr4 6407902 6408320 -195920027 + L2 LINE L2 2738 3268 -45 599 233 7 0 chr4 6408320 6408470 -195919877 - L1 LINE L1 -1764 4382 4232 * 2220 145 0 3 chr4 6408469 6408849 -195919498 + L1PB3 LINE L1 5734 6112 -42 198 103 0 0 chr4 6408995 6409024 -195919323 + (CACCAT)n Simple_repeat Simple_repeat 4 32 0 655 116 0 101 chr4 6409035 6409234 -195919113 + (CACCAT)n Simple_repeat Simple_repeat 1 179 0 655 116 0 101 chr4 6409248 6409447 -195918900 + (CACCAT)n Simple_repeat Simple_repeat 1 179 0 340 97 32 0 chr4 6409459 6409521 -195918826 + (CACCAT)n Simple_repeat Simple_repeat 5 68 0 688 176 23 6 chr4 6409532 6409708 -195918639 + (CACCAT)n Simple_repeat Simple_repeat 1 179 0 208 107 0 0 chr4 6409708 6409736 -195918611 + (CAT)n Simple_repeat Simple_repeat 1 28 0 343 317 137 22 chr4 6410245 6410428 -195917919 - MIR SINE MIR -6 256 53 660 310 70 0 chr4 6410472 6410685 -195917662 + MIR SINE MIR 35 262 0 220 98 0 59 chr4 6411775 6411826 -195916521 + (TTCC)n Simple_repeat Simple_repeat 4 51 0 318 333 150 8 chr4 6412061 6412460 -195915887 + L2 LINE L2 2817 3272 0 672 365 73 0 chr4 6412520 6412876 -195915471 + L3 LINE CR1 767 1148 -429 620 324 14 19 chr4 6412889 6413102 -195915245 + MIR SINE MIR 8 219 -43 1408 141 94 7 chr4 6414317 6414594 -195913753 + THE1B LTR MaLR 1 301 -63 871 207 45 21 chr4 6415379 6415621 -195912726 - ORSL DNA AcHobo -20 255 8 279 365 116 5 chr4 6416695 6416884 -195911463 + MIR SINE MIR 28 237 -25 563 250 6 0 chr4 6418606 6419280 -195909067 + (CA)n Simple_repeat Simple_repeat 1 678 0 557 232 6 0 chr4 6419297 6419465 -195908882 + (CA)n Simple_repeat Simple_repeat 2 170 0 629 232 0 6 chr4 6419481 6419805 -195908542 + (CA)n Simple_repeat Simple_repeat 1 321 0 529 366 78 70 chr4 6420107 6420782 -195907565 - L1MC4a LINE L1 -1611 6197 5517 254 303 46 9 chr4 6421227 6421336 -195907011 - L2 LINE L2 -4 3268 3156 189 203 68 54 chr4 6421664 6421738 -195906609 - MER5A DNA MER1_type -89 100 26 204 195 0 0 chr4 6422752 6422793 -195905554 - MIR SINE MIR -113 149 109 285 344 45 45 chr4 6423331 6423488 -195904859 + MIR3 SINE MIR 35 191 -17 517 237 9 0 chr4 6423664 6423778 -195904569 - MER45A DNA AcHobo -2 176 62 2196 95 3 3 chr4 6425603 6425897 -195902450 - AluSq SINE Alu -19 294 1 254 211 18 0 chr4 6426716 6426773 -195901574 - L2 LINE L2 -211 3061 3004 1033 214 91 53 chr4 6427608 6427940 -195900407 + MLT1C LTR MaLR 2 360 -107 2244 102 0 0 chr4 6427940 6428235 -195900112 - AluSc SINE Alu -14 295 1 1033 214 91 53 chr4 6428235 6428348 -195899999 + MLT1C LTR MaLR 360 467 0 341 341 24 2 chr4 6429551 6429689 -195898658 + MIR SINE MIR 11 143 -65 196 402 45 0 chr4 6429755 6429867 -195898480 + L2 LINE L2 3181 3297 -16 424 220 10 0 chr4 6429872 6429972 -195898375 + L1MB3 LINE L1 5639 5739 -432 2204 85 10 0 chr4 6429972 6430266 -195898081 + AluSg SINE Alu 1 297 -13 1419 182 18 74 chr4 6430268 6430471 -195897876 + L1MB3 LINE L1 5823 5997 -186 2177 86 0 0 chr4 6430471 6430761 -195897586 - AluSx SINE Alu -22 290 1 1419 182 18 74 chr4 6430761 6430937 -195897410 + L1MB3 LINE L1 5997 6181 -2 202 256 56 44 chr4 6431286 6431376 -195896971 - MIR SINE MIR -159 103 13 2053 200 57 36 chr4 6431471 6431730 -195896617 + MER66B LTR ERV1 1 276 -210 1794 66 91 0 chr4 6431730 6431971 -195896376 + AluSg SINE Alu 1 263 -47 2053 200 57 36 chr4 6431971 6432185 -195896162 + MER66B LTR ERV1 276 484 -2 256 263 113 45 chr4 6432338 6432471 -195895876 - MIR SINE MIR -70 192 51 345 272 103 0 chr4 6432830 6432966 -195895381 - MER31-int LTR ERV1 -1632 3304 3155 2251 100 0 3 chr4 6432971 6433280 -195895067 + AluSx SINE Alu 2 309 -3 485 288 115 9 chr4 6433305 6433531 -195894816 + LTR16C LTR ERVL 134 383 -108 659 247 12 12 chr4 6433735 6433905 -195894442 + LTR16C LTR ERVL 314 483 -8 357 324 29 7 chr4 6434034 6434170 -195894177 - MIR SINE MIR -110 152 14 209 116 0 23 chr4 6434183 6434226 -195894121 + (GGGA)n Simple_repeat Simple_repeat 2 43 0 203 79 26 0 chr4 6434753 6434791 -195893556 + (TTTTTG)n Simple_repeat Simple_repeat 2 40 0 238 121 35 35 chr4 6434810 6434868 -195893479 + GA-rich Low_complexity Low_complexity 1 58 0 428 331 95 63 chr4 6435311 6435658 -195892689 + L3 LINE CR1 1146 1503 -74 498 330 77 27 chr4 6435820 6436081 -195892266 + MLT1L LTR MaLR 101 374 -241 312 234 0 0 chr4 6437107 6437171 -195891176 - MIR SINE MIR -121 141 78 711 154 18 0 chr4 6437558 6437727 -195890620 + (TCCA)n Simple_repeat Simple_repeat 1 172 0 821 143 25 7 chr4 6437742 6438143 -195890204 + (TCCA)n Simple_repeat Simple_repeat 1 408 0 551 191 17 17 chr4 6438164 6438342 -195890005 + (TCCA)n Simple_repeat Simple_repeat 1 178 0 697 151 30 0 chr4 6438357 6438523 -195889824 + (TCCA)n Simple_repeat Simple_repeat 2 172 0 272 349 84 44 chr4 6438669 6438944 -195889403 - L2 LINE L2 -173 3099 2814 271 282 104 37 chr4 6439979 6440117 -195888230 - MIR SINE MIR -59 149 13 377 82 0 87 chr4 6440688 6440872 -195887475 + (CACCT)n Simple_repeat Simple_repeat 3 170 0 1786 143 0 0 chr4 6440966 6441224 -195887123 - AluSx SINE Alu -11 301 44 2097 109 3 0 chr4 6441263 6441590 -195886757 + AluSx SINE Alu 1 328 0 2154 51 44 7 chr4 6441624 6441933 -195886414 + AluY SINE Alu 1 319 0 1722 144 38 17 chr4 6442705 6442996 -195885351 + AluJo SINE Alu 1 297 -15 182 37 37 0 chr4 6443041 6443068 -195885279 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 1648 177 7 7 chr4 6443068 6443367 -195884980 + AluJo SINE Alu 2 300 -12 199 305 63 21 chr4 6443402 6443497 -195884850 + L2 LINE L2 3003 3101 -212 271 303 110 0 chr4 6443580 6443735 -195884612 + L3 LINE CR1 1295 1466 -111 1576 180 68 22 chr4 6443757 6444043 -195884304 - MLT1B LTR MaLR -17 373 66 1133 106 0 150 chr4 6444043 6444270 -195884077 + 7SK RNA RNA 1 193 0 1576 180 68 22 chr4 6444270 6444338 -195884009 - MLT1B LTR MaLR -324 66 3 195 281 42 10 chr4 6444438 6444534 -195883813 + MIR SINE MIR 33 131 -77 329 298 168 8 chr4 6444933 6445064 -195883283 - L1ME4a LINE L1 -17 6104 5953 275 315 120 0 chr4 6445424 6445532 -195882815 - L2 LINE L2 -8 3264 3144 2468 123 31 14 chr4 6446074 6446432 -195881915 - THE1B LTR MaLR 0 364 1 180 0 0 0 chr4 6446434 6446454 -195881893 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 234 0 0 0 chr4 6447082 6447108 -195881239 + (TTCA)n Simple_repeat Simple_repeat 2 27 0 326 200 124 57 chr4 6447128 6447233 -195881114 - L2 LINE L2 -28 3285 3174 367 345 79 0 chr4 6448106 6448271 -195880076 - MIR SINE MIR -37 225 48 242 73 24 0 chr4 6448465 6448506 -195879841 + (CA)n Simple_repeat Simple_repeat 1 42 0 2068 110 7 3 chr4 6449419 6449711 -195878636 - AluSq SINE Alu -20 293 1 1813 164 0 22 chr4 6449720 6450032 -195878315 - AluJb SINE Alu -7 305 1 1982 85 48 4 chr4 6450236 6450532 -195877815 + AluSq SINE Alu 1 308 0 2198 109 0 0 chr4 6451109 6451402 -195876945 + AluSx SINE Alu 1 293 -19 295 253 87 105 chr4 6451609 6451886 -195876461 - L2 LINE L2 -188 3084 2813 258 132 0 73 chr4 6452922 6452990 -195875357 + (CGGGG)n Simple_repeat Simple_repeat 1 63 0 287 243 27 63 chr4 6453144 6453255 -195875092 - L2 LINE L2 -14 3258 3152 228 282 29 68 chr4 6453222 6453325 -195875022 + MIR3 SINE MIR 58 156 -52 * 2260 126 7 0 chr4 6453573 6453883 -195874464 - AluSx SINE Alu 0 312 1 207 125 0 0 chr4 6454711 6454751 -195873596 + (CCCA)n Simple_repeat Simple_repeat 2 41 0 3904 194 48 20 chr4 6454883 6455072 -195873275 + L1MB7 LINE L1 5004 5186 -998 2072 154 0 6 chr4 6455072 6455384 -195872963 + AluJb SINE Alu 1 310 -2 3904 194 48 20 chr4 6455384 6455854 -195872493 + L1MB7 LINE L1 5186 5641 -543 2395 107 0 0 chr4 6455854 6456164 -195872183 + AluSg SINE Alu 1 310 0 3904 194 48 20 chr4 6456164 6456652 -195871695 + L1MB7 LINE L1 5641 6183 -1 2355 97 7 0 chr4 6456655 6456944 -195871403 - AluSx SINE Alu -21 291 1 2247 107 13 0 chr4 6456952 6457250 -195871097 - AluSq SINE Alu -11 302 1 630 246 75 0 chr4 6457265 6457545 -195870802 + L1M4 LINE L1 3030 3330 -2816 547 231 31 0 chr4 6458024 6458154 -195870193 + MLT1C-int LTR MaLR 1238 1371 0 765 199 65 15 chr4 6458154 6458355 -195869992 + MLT1C LTR MaLR 1 211 -256 2353 175 29 13 chr4 6458383 6458839 -195869508 - MLT1C LTR MaLR 0 467 5 2791 194 9 5 chr4 6459129 6459685 -195868662 - L1MB3 LINE L1 0 6183 5626 231 217 0 0 chr4 6460202 6460262 -195868085 + (CA)n Simple_repeat Simple_repeat 1 60 0 2426 89 3 19 chr4 6460943 6461257 -195867090 - AluSq SINE Alu -4 309 1 308 159 0 43 chr4 6462026 6462095 -195866252 - MLT1F1 LTR MaLR 0 567 502 455 310 108 8 chr4 6462095 6462480 -195865867 - L1MB3 LINE L1 -657 5507 5083 410 119 0 0 chr4 6462482 6462541 -195865806 + AluS SINE Alu 2 60 -251 1411 139 5 14 chr4 6462584 6462799 -195865548 + AluSg/x SINE Alu 68 280 -32 1021 104 6 6 chr4 6462801 6462964 -195865383 + (GAAA)n Simple_repeat Simple_repeat 2 164 0 479 309 14 34 chr4 6462964 6463171 -195865176 - L1MB3 LINE L1 -1059 5087 4885 236 307 61 18 chr4 6463297 6463460 -195864887 + L1MC/D LINE L1 5720 5889 -1919 2382 101 3 0 chr4 6463462 6463770 -195864577 + AluSq SINE Alu 1 309 -4 2156 98 7 18 chr4 6463772 6464106 -195864241 + AluSq SINE Alu 1 331 0 376 255 35 41 chr4 6464491 6464636 -195863711 - L1ME4a LINE L1 -12 6109 5966 3829 80 51 0 chr4 6464783 6465310 -195863037 + MER41A LTR ERV1 1 554 0 267 119 24 0 chr4 6465310 6465352 -195862995 + MER41A-int LTR ERV1 1 43 -5903 1924 111 95 47 chr4 6465395 6465858 -195862489 + MER41A-int LTR ERV1 1 310 -5642 7553 141 202 32 chr4 6465879 6467494 -195860853 + MER41A-int LTR ERV1 129 2017 -3929 334 59 59 0 chr4 6467490 6467541 -195860806 + MER41A-int LTR ERV1 2167 2220 -3726 * 3128 128 55 43 chr4 6467537 6467944 -195860403 + MER41A-int LTR ERV1 3355 3755 -4061 2288 112 0 3 chr4 6467944 6468239 -195860108 + AluSg SINE Alu 1 294 -16 3128 128 55 43 chr4 6468239 6468342 -195860005 + MER41A-int LTR ERV1 3755 3855 -3961 2202 126 7 0 chr4 6468342 6468643 -195859704 + AluSq SINE Alu 1 303 -10 3128 128 55 43 chr4 6468643 6468671 -195859676 + MER41A-int LTR ERV1 3855 3881 -3935 2195 122 0 7 chr4 6468671 6468967 -195859380 + AluSx SINE Alu 1 294 -18 3128 128 55 43 chr4 6468967 6469348 -195858999 + MER41A-int LTR ERV1 3881 4417 -3399 11453 85 32 26 chr4 6469382 6470006 -195858341 + MER41A-int LTR ERV1 4191 4810 -1136 1978 167 0 0 chr4 6470006 6470300 -195858047 + AluSx SINE Alu 1 294 -18 11453 85 32 26 chr4 6470300 6471419 -195856928 + MER41A-int LTR ERV1 4810 5944 -2 3792 85 43 0 chr4 6471419 6471950 -195856397 + MER41A LTR ERV1 1 554 0 948 108 6 78 chr4 6472386 6472553 -195855794 + FRAM SINE Alu 1 40 0 815 223 54 0 chr4 6472578 6472762 -195855585 + MER58A DNA MER1_type 3 196 -28 353 274 152 22 chr4 6472976 6473246 -195855101 + LTR16A LTR ERVL 146 450 0 533 300 15 45 chr4 6473269 6473536 -195854811 - L2 LINE L2 -528 2786 2528 2229 95 3 0 chr4 6473627 6473977 -195854370 + AluSx SINE Alu 1 351 0 1229 214 137 51 chr4 6474187 6474677 -195853670 - LTR55 LTR ERV -16 532 1 371 321 70 12 chr4 6474678 6475021 -195853326 + L1 LINE L1 4288 4650 -1496 261 169 31 31 chr4 6475100 6475165 -195853182 + L1ME LINE L1 5714 5778 -343 860 172 0 0 chr4 6475192 6475326 -195853021 + AluJ SINE Alu 3 136 -176 6529 86 1 2 chr4 6475333 6477142 -195851205 + L1PA10 LINE L1 4352 6168 0 195 184 0 0 chr4 6477210 6477248 -195851099 + A-rich Low_complexity Low_complexity 1 38 0 2035 124 3 23 chr4 6477252 6477558 -195850789 + AluSg SINE Alu 1 300 -10 1996 125 45 14 chr4 6477560 6477847 -195850500 + AluSx SINE Alu 1 296 -16 28 29 0 0 chr4 6477847 6477882 -195850465 + AT_rich Low_complexity Low_complexity 1 35 0 1195 160 0 5 chr4 6477882 6478070 -195850277 + AluJ SINE Alu 117 303 -9 225 302 62 10 chr4 6479495 6479591 -195848756 - MLT1K LTR MaLR -346 242 142 205 196 0 22 chr4 6479819 6479865 -195848482 + (CCA)n Simple_repeat Simple_repeat 1 45 0 210 329 31 12 chr4 6480143 6480304 -195848043 + (CAGGG)n Simple_repeat Simple_repeat 5 168 0 1655 114 144 0 chr4 6481060 6481324 -195847023 + AluSx SINE Alu 1 302 0 999 237 58 34 chr4 6481832 6482242 -195846105 + MLT1D LTR MaLR 35 493 -12 284 262 58 29 chr4 6482300 6482403 -195845944 + MIR SINE MIR 47 152 -110 923 218 196 25 chr4 6482556 6482955 -195845392 + MLT1J LTR MaLR 13 479 -32 234 219 0 47 chr4 6484293 6484357 -195843990 + MIR SINE MIR 136 196 -66 1183 266 104 42 chr4 6484358 6484840 -195843507 - MLT1E3 LTR MaLR -112 512 1 2229 74 0 40 chr4 6485841 6486173 -195842174 - AluSx SINE Alu 0 320 1 2061 136 3 3 chr4 6486201 6486509 -195841838 + AluSx SINE Alu 1 308 -4 365 271 83 43 chr4 6486520 6486940 -195841407 - L1MC5 LINE L1 -50 7911 7475 26 64 0 0 chr4 6488070 6488117 -195840230 + GC_rich Low_complexity Low_complexity 1 47 0 272 253 154 19 chr4 6489994 6490225 -195838122 - L1MC5 LINE L1 -421 5821 5674 2019 55 0 19 chr4 6490332 6490589 -195837758 + AluY SINE Alu 45 296 -15 2264 89 3 20 chr4 6490900 6491204 -195837143 - AluSp SINE Alu -5 308 10 874 176 20 7 chr4 6491489 6491637 -195836710 + FRAM SINE Alu 3 152 -24 1641 137 129 0 chr4 6491647 6491910 -195836437 + AluSx SINE Alu 1 297 -15 213 108 0 0 chr4 6491921 6491958 -195836389 + (TAGA)n Simple_repeat Simple_repeat 4 40 0 1884 156 31 0 chr4 6493060 6493349 -195834998 + AluJb SINE Alu 1 298 -14 2420 64 0 17 chr4 6493634 6493929 -195834418 + AluY SINE Alu 1 290 -21 237 33 0 0 chr4 6493930 6493960 -195834387 + (TA)n Simple_repeat Simple_repeat 2 31 0 195 306 124 16 chr4 6494442 6494563 -195833784 - MIR SINE MIR -116 146 13 450 332 142 0 chr4 6494705 6495000 -195833347 + L2 LINE L2 1996 2332 -982 1202 243 57 33 chr4 6495238 6495327 -195833020 - L1MC5 LINE L1 -784 5362 5277 180 0 0 0 chr4 6495327 6495347 -195833000 + (TA)n Simple_repeat Simple_repeat 1 20 0 2375 102 3 13 chr4 6495349 6495663 -195832684 - AluSx SINE Alu -1 311 1 1202 243 57 33 chr4 6495663 6495980 -195832367 - L1MC5 LINE L1 -869 5277 4938 774 32 0 0 chr4 6495980 6496073 -195832274 + (TTTC)n Simple_repeat Simple_repeat 3 95 0 1202 243 57 33 chr4 6496073 6496119 -195832228 - L1MC5 LINE L1 -1208 4938 4895 348 183 175 8 chr4 6497767 6497887 -195830460 + MIR SINE MIR 92 231 -31 332 245 71 65 chr4 6498082 6498166 -195830181 - L1ME4a LINE L1 -1 6120 6038 2339 114 0 0 chr4 6498166 6498473 -195829874 + AluSx SINE Alu 1 307 -5 332 245 71 65 chr4 6498473 6498572 -195829775 - L1ME4a LINE L1 -83 6038 5936 2181 111 43 25 chr4 6500185 6500553 -195827794 - THE1C LTR MaLR 0 375 1 231 289 144 0 chr4 6501445 6501535 -195826812 - MIR SINE MIR -80 182 80 318 209 118 18 chr4 6502568 6502678 -195825669 - MER113 DNA MER1_type? -302 219 99 2348 86 7 0 chr4 6502679 6502969 -195825378 + AluSg SINE Alu 6 297 -13 200 360 27 36 chr4 6503827 6503938 -195824409 + MIR SINE MIR 35 144 -118 282 301 109 65 chr4 6504611 6505013 -195823334 + L2 LINE L2 2810 3229 -43 216 192 19 39 chr4 6505109 6505161 -195823186 - L2 LINE L2 -14 3258 3208 250 286 134 9 chr4 6505411 6505523 -195822824 - MER96 DNA MER1_type? -39 136 11 189 299 41 62 chr4 6506058 6506155 -195822192 + MIR3 SINE MIR 88 182 -26 316 309 158 29 chr4 6506627 6506829 -195821518 - MIR SINE MIR -43 219 3 196 231 0 0 chr4 6507523 6507562 -195820785 + L2 LINE L2 3263 3301 -12 222 362 51 22 chr4 6507670 6507808 -195820539 + MIR3 SINE MIR 5 146 -62 334 220 66 0 chr4 6507879 6507970 -195820377 + MER5A DNA MER1_type 10 106 -83 187 267 287 0 chr4 6507904 6508005 -195820342 - MER5A DNA MER1_type -24 165 36 * 190 332 72 9 chr4 6508410 6508633 -195819714 + L2 LINE L2 2738 2974 -340 211 336 60 0 chr4 6508670 6508786 -195819561 + L2 LINE L2 3141 3263 -9 182 331 83 53 chr4 6508815 6508984 -195819363 + MIR SINE MIR 45 218 -44 1583 202 80 36 chr4 6509292 6509707 -195818640 + MLT1D LTR MaLR 1 433 -72 532 216 16 0 chr4 6509712 6509837 -195818510 - MER47A DNA MER2_type 0 366 240 530 232 0 0 chr4 6509838 6509950 -195818397 - MER47A DNA MER2_type -254 112 1 351 203 0 0 chr4 6509950 6510019 -195818328 + MLT1D LTR MaLR 437 505 0 417 290 36 67 chr4 6511154 6511311 -195817036 + MIR SINE MIR 45 208 -54 2120 114 0 31 chr4 6511311 6511628 -195816719 + AluSx SINE Alu 1 307 -5 417 290 36 67 chr4 6511628 6511664 -195816683 + MIR SINE MIR 208 244 -18 743 263 91 45 chr4 6512135 6512531 -195815816 + MLT1C LTR MaLR 54 467 0 220 246 87 43 chr4 6513538 6513676 -195814671 + L2 LINE L2 2921 3064 -208 205 378 64 13 chr4 6513886 6514042 -195814305 - L3 LINE CR1 -7 1570 1407 254 284 28 57 chr4 6514468 6514609 -195813738 - MIR SINE MIR -90 172 36 944 135 12 0 chr4 6514720 6514890 -195813457 + (TTCA)n Simple_repeat Simple_repeat 2 173 0 321 274 186 0 chr4 6514901 6515003 -195813344 - L2 LINE L2 -15 3257 3137 220 271 82 16 chr4 6515076 6515198 -195813149 - L2 LINE L2 -1469 1845 1716 * 233 241 0 0 chr4 6515192 6515246 -195813101 + L2 LINE L2 3218 3271 -1 201 262 153 38 chr4 6515540 6515723 -195812624 - L2 LINE L2 -411 2903 2700 372 324 33 2 chr4 6516057 6516262 -195812085 + MIR3 SINE MIR 1 259 -3 308 280 136 8 chr4 6516391 6516516 -195811831 - MIR3 SINE MIR -32 176 36 730 254 149 11 chr4 6516522 6516797 -195811550 - MLT1C LTR MaLR -21 446 134 2289 95 0 0 chr4 6516831 6517127 -195811220 - AluSq SINE Alu -17 296 1 337 273 97 48 chr4 6518349 6518514 -195809833 - MIR3 SINE MIR -22 186 14 575 232 53 0 chr4 6520169 6520320 -195808027 - MLT1B LTR MaLR 0 390 232 235 200 0 0 chr4 6520340 6520385 -195807962 + G-rich Low_complexity Low_complexity 1 45 0 206 23 93 0 chr4 6520386 6520429 -195807918 + GA-rich Low_complexity Low_complexity 2 48 0 483 226 82 7 chr4 6520430 6520576 -195807771 - MLT1B LTR MaLR -205 185 29 196 178 22 0 chr4 6520659 6520704 -195807643 + L2 LINE L2 3014 3059 -213 391 296 254 0 chr4 6520998 6521278 -195807069 + L2 LINE L2 2912 3262 -10 188 268 36 0 chr4 6521291 6521347 -195807000 + L2 LINE L2 3207 3264 -8 289 357 56 16 chr4 6522328 6522454 -195805893 - MIR3 SINE MIR -63 145 15 210 310 17 0 chr4 6522462 6522520 -195805827 + (TG)n Simple_repeat Simple_repeat 2 60 0 237 33 0 0 chr4 6522585 6522615 -195805732 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 323 328 156 25 chr4 6522627 6523119 -195805228 - L2 LINE L2 -25 3247 2682 183 325 12 62 chr4 6523584 6523664 -195804683 - MIR SINE MIR -123 139 64 2418 66 0 3 chr4 6524816 6525117 -195803230 + AluY SINE Alu 1 300 -11 386 139 14 0 chr4 6526437 6526509 -195801838 + CT-rich Low_complexity Low_complexity 3 75 0 320 319 21 42 chr4 6528163 6528228 -195800119 - MIR SINE MIR -4 258 193 192 40 0 0 chr4 6528228 6528253 -195800094 + (TTCA)n Simple_repeat Simple_repeat 3 27 0 320 319 21 42 chr4 6528253 6528331 -195800016 - MIR SINE MIR -69 193 118 789 185 13 0 chr4 6528331 6528488 -195799859 + L1MC/D LINE L1 5476 5634 -699 391 275 64 0 chr4 6530946 6531055 -195797292 + MIR SINE MIR 47 162 -100 180 336 96 0 chr4 6531935 6532039 -195796308 - L2 LINE L2 -177 3095 2982 2634 141 62 2 chr4 6534338 6534741 -195793606 + MSTA LTR MaLR 2 428 0 308 250 0 33 chr4 6536610 6536702 -195791645 + HsTC2 DNA Tc2 1 89 -1809 880 317 110 23 chr4 6537319 6537950 -195790397 - L2 LINE L2 -3 3310 2613 2050 126 0 3 chr4 6538884 6539178 -195789169 + AluSx SINE Alu 5 297 -15 1352 198 38 108 chr4 6539196 6539696 -195788651 - MLT1C LTR MaLR -2 465 1 310 331 128 12 chr4 6540341 6540513 -195787834 + MIR SINE MIR 25 216 -46 196 275 12 62 chr4 6540637 6540717 -195787630 - MIR3 SINE MIR -6 202 127 377 258 129 12 chr4 6540898 6541061 -195787286 - L2 LINE L2 -257 3056 2875 931 71 20 45 chr4 6541571 6541894 -195786453 + (TGGA)n Simple_repeat Simple_repeat 1 315 0 297 51 0 0 chr4 6541906 6541945 -195786402 + (TGGA)n Simple_repeat Simple_repeat 1 39 0 224 297 203 7 chr4 6541989 6542127 -195786220 - MIR3 SINE MIR -41 167 3 22 56 0 0 chr4 6542192 6542228 -195786119 + AT_rich Low_complexity Low_complexity 1 36 0 1410 189 79 16 chr4 6542895 6543261 -195785086 - MLT1C LTR MaLR -76 391 3 214 316 13 13 chr4 6543445 6543524 -195784823 - MIR SINE MIR -117 145 67 332 298 0 10 chr4 6543621 6543725 -195784622 - MIR SINE MIR -61 147 45 283 241 60 0 chr4 6543821 6543904 -195784443 + MER81 DNA DNA 27 114 0 372 298 128 30 chr4 6544737 6544972 -195783375 + L2 LINE L2 2906 3163 -109 2261 206 27 2 chr4 6545190 6545628 -195782719 - L1MB5 LINE L1 -8 6166 5718 190 227 68 0 chr4 6545653 6545697 -195782650 - L2 LINE L2 -23 3290 3244 238 264 35 0 chr4 6545798 6545885 -195782462 + MER45 DNA AcHobo 26 115 -1466 309 357 8 16 chr4 6546782 6546911 -195781436 + MIR SINE MIR 17 144 -118 316 248 204 0 chr4 6547065 6547178 -195781169 + MIR SINE MIR 8 143 -119 180 359 39 10 chr4 6548859 6548962 -195779385 - MIR3 SINE MIR -6 202 97 194 283 19 0 chr4 6549080 6549133 -195779214 + MIR SINE MIR 90 143 -65 3144 222 34 4 chr4 6549437 6550262 -195778085 - L1M4 LINE L1 -2885 3261 2412 303 311 0 49 chr4 6550391 6550513 -195777834 + L2 LINE L2 3197 3312 -1 26 30 0 0 chr4 6550532 6550565 -195777782 + AT_rich Low_complexity Low_complexity 1 33 0 604 304 68 27 chr4 6550904 6551124 -195777223 - MIR SINE MIR -21 241 13 461 296 39 82 chr4 6551824 6552030 -195776317 - MIR SINE MIR 0 262 66 2168 113 0 3 chr4 6552036 6552346 -195776001 - AluSq SINE Alu -4 309 1 204 178 0 44 chr4 6555123 6555168 -195773179 + CT-rich Low_complexity Low_complexity 3 45 0 623 225 21 0 chr4 6555169 6555449 -195772898 + (TCCA)n Simple_repeat Simple_repeat 1 285 0 208 231 26 0 chr4 6555468 6555546 -195772801 + (TCCA)n Simple_repeat Simple_repeat 1 80 0 314 279 81 62 chr4 6555659 6555820 -195772527 + L2 LINE L2 3109 3272 0 274 303 107 0 chr4 6555826 6555948 -195772399 - MIR3 SINE MIR -45 163 29 201 265 118 0 chr4 6556434 6556502 -195771845 - MIR3 SINE MIR -41 167 92 238 273 0 0 chr4 6556999 6557054 -195771293 + L2 LINE L2 3208 3262 -10 215 299 51 26 chr4 6557954 6558071 -195770276 + MIR SINE MIR 17 136 -72 186 43 0 0 chr4 6558191 6558214 -195770133 + (GA)n Simple_repeat Simple_repeat 1 23 0 544 278 44 15 chr4 6558870 6559075 -195769272 - MLT1J2 LTR MaLR 0 450 240 553 280 113 27 chr4 6559440 6559769 -195768578 + L2 LINE L2 2828 3184 -129 1103 193 44 139 chr4 6559780 6560189 -195768158 - MLT1A2 LTR MaLR -4 370 1 347 287 130 0 chr4 6560202 6560310 -195768037 + L2 LINE L2 3191 3312 -1 397 278 98 40 chr4 6561740 6561913 -195766434 - MIR SINE MIR -12 250 68 318 257 119 9 chr4 6562190 6562299 -195766048 - L1M4 LINE L1 -3353 2793 2673 1552 204 40 3 chr4 6562322 6562514 -195765833 - AluJo SINE Alu -2 310 102 2030 134 23 7 chr4 6562514 6562821 -195765526 + AluSx SINE Alu 1 312 0 1552 204 40 3 chr4 6562821 6562927 -195765420 - AluJo SINE Alu -210 102 1 504 328 25 20 chr4 6563630 6563892 -195764455 - MIR SINE MIR 0 262 2 2035 105 0 20 chr4 6564062 6564356 -195763991 - AluJb SINE Alu -2 310 23 394 220 0 36 chr4 6564894 6565062 -195763285 + CT-rich Low_complexity Low_complexity 1 162 0 294 377 16 0 chr4 6566419 6566541 -195761806 + MIR SINE MIR 75 198 -64 205 313 47 0 chr4 6567515 6567579 -195760768 + L3 LINE CR1 1263 1329 -248 771 281 51 23 chr4 6567659 6568054 -195760293 + MER115 DNA AcHobo 29 434 -259 529 279 8 0 chr4 6570361 6570490 -195757857 - MIR SINE MIR -39 223 94 517 273 16 0 chr4 6571031 6571159 -195757188 - L2 LINE L2 -1 3271 3142 247 79 26 0 chr4 6572154 6572192 -195756155 + L2 LINE L2 2745 2783 -531 964 281 72 36 chr4 6572202 6572593 -195755754 + L2 LINE L2 2887 3291 -22 270 116 0 0 chr4 6572595 6572638 -195755709 + (TG)n Simple_repeat Simple_repeat 2 44 0 304 295 76 19 chr4 6573757 6573862 -195754485 - MIR SINE MIR -29 233 123 380 198 25 136 chr4 6573896 6574058 -195754289 - L2 LINE L2 0 3313 3170 220 263 18 0 chr4 6574157 6574214 -195754133 + CT-rich Low_complexity Low_complexity 4 61 0 2390 66 3 0 chr4 6574854 6575156 -195753191 - AluY SINE Alu -8 303 1 295 140 0 53 chr4 6577274 6577331 -195751016 - MIR SINE MIR -61 147 94 312 256 17 0 chr4 6577582 6577754 -195750593 + (TG)n Simple_repeat Simple_repeat 1 175 0 323 350 50 7 chr4 6579000 6579147 -195749200 - MIR SINE MIR -61 147 14 586 223 0 0 chr4 6580036 6580157 -195748190 - MIR SINE MIR -62 200 80 2293 262 48 39 chr4 6580747 6581691 -195746656 - L1ME1 LINE L1 -4 6162 5201 2161 123 0 3 chr4 6581691 6582000 -195746347 - AluSc SINE Alu -1 308 1 2293 262 48 39 chr4 6582000 6582120 -195746227 - L1ME1 LINE L1 -965 5201 5084 233 299 188 17 chr4 6583104 6583221 -195745126 - L2 LINE L2 0 3272 3136 255 360 72 0 chr4 6583492 6583631 -195744716 + L2 LINE L2 2608 2756 -558 2342 87 0 0 chr4 6584153 6584464 -195743883 - AluY SINE Alu 0 311 1 2042 90 34 65 chr4 6584635 6584958 -195743389 - AluSq SINE Alu 0 313 1 195 304 0 0 chr4 6585149 6585195 -195743152 + MIR SINE MIR 217 262 0 205 303 130 34 chr4 6585404 6585642 -195742705 + L2 LINE L2 2908 3168 -104 877 157 6 9 chr4 6585746 6586086 -195742261 + (TCCA)n Simple_repeat Simple_repeat 1 338 0 204 296 0 102 chr4 6586109 6586207 -195742140 - L2 LINE L2 0 3272 3185 206 298 0 0 chr4 6586364 6586411 -195741936 + MIR SINE MIR 74 120 -142 317 154 0 0 chr4 6587732 6587784 -195740563 + MLT1L LTR MaLR 22 73 -394 536 304 85 27 chr4 6587911 6588135 -195740212 - MIR SINE MIR -4 258 22 317 273 219 11 chr4 6588292 6588475 -195739872 + MIR SINE MIR 21 241 -21 1783 236 31 5 chr4 6588555 6589000 -195739347 - L1ME1 LINE L1 -5 6161 5705 608 210 105 6 chr4 6588993 6589174 -195739173 - L1MCc LINE L1 -5058 1365 1167 * 1758 176 0 29 chr4 6589248 6589554 -195738793 + AluJo SINE Alu 1 297 -15 829 161 0 0 chr4 6589846 6589983 -195738364 + AluJo SINE Alu 1 137 -175 498 330 77 27 chr4 6590776 6591037 -195737310 + MLT1L LTR MaLR 101 374 -241 312 234 0 0 chr4 6592063 6592127 -195736220 - MIR SINE MIR -121 141 78 196 158 35 0 chr4 6592516 6592573 -195735774 + (TCCA)n Simple_repeat Simple_repeat 4 62 0 667 151 22 17 chr4 6592588 6592767 -195735580 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 374 230 23 0 chr4 6592788 6592962 -195735385 + (TCCA)n Simple_repeat Simple_repeat 1 178 0 244 301 11 0 chr4 6592975 6593068 -195735279 + (TCCA)n Simple_repeat Simple_repeat 1 94 0 529 312 47 58 chr4 6593655 6593998 -195734349 + L2 LINE L2 2932 3270 -2 2086 117 10 0 chr4 6595263 6595553 -195732794 + AluSx SINE Alu 1 293 -19 555 205 18 0 chr4 6595742 6595854 -195732493 - MER81 DNA DNA 0 114 1 195 194 113 32 chr4 6597226 6597288 -195731059 + MIR SINE MIR 34 100 -108 447 332 154 14 chr4 6597726 6598296 -195730051 + L1ME4a LINE L1 5347 5996 -125 2130 116 0 25 chr4 6598689 6599008 -195729339 - AluSx SINE Alu -1 311 1 308 363 137 0 chr4 6599849 6600039 -195728308 - MIR SINE MIR 0 262 47 396 302 171 19 chr4 6600688 6600882 -195727465 - MIR SINE MIR 0 262 34 2231 79 3 55 chr4 6600882 6601212 -195727135 - AluSq SINE Alu 0 313 1 210 154 0 0 chr4 6601880 6601919 -195726428 + A-rich Low_complexity Low_complexity 1 39 0 2048 132 3 16 chr4 6602037 6602347 -195726000 + AluSx SINE Alu 1 306 -6 237 65 0 0 chr4 6603571 6603602 -195724745 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 259 275 154 0 chr4 6604020 6604111 -195724236 + L2 LINE L2 3168 3272 0 197 343 14 0 chr4 6604111 6604181 -195724166 - MIR SINE MIR -129 133 63 180 380 80 20 chr4 6604373 6604523 -195723824 + MIR SINE MIR 77 235 -27 472 243 69 23 chr4 6604872 6605045 -195723302 + L1MB7 LINE L1 5943 6123 -61 250 254 34 68 chr4 6606863 6606981 -195721366 + L2 LINE L2 3158 3271 -1 618 236 23 23 chr4 6607311 6607485 -195720862 + MLT1H LTR MaLR 1 174 -375 585 176 17 17 chr4 6607600 6607719 -195720628 + MLT1H LTR MaLR 431 549 0 3574 139 13 8 chr4 6607883 6608482 -195719865 + LTR10E LTR ERV1 1 602 -31 659 245 13 0 chr4 6608656 6608811 -195719536 - MIR SINE MIR -95 167 11 868 234 92 77 chr4 6610629 6610954 -195717393 - MER102a DNA MER1_type 0 330 1 369 351 48 0 chr4 6611203 6611368 -195716979 + MIR SINE MIR 20 192 -70 290 333 25 44 chr4 6611422 6611626 -195716721 + L3 LINE CR1 1272 1471 -106 2115 103 17 0 chr4 6612537 6612828 -195715519 + AluSx SINE Alu 1 296 -16 213 319 138 11 chr4 6614892 6615080 -195713267 + MIR SINE MIR 36 247 -15 390 279 41 7 chr4 6615478 6615625 -195712722 - L2 LINE L2 0 3272 3121 405 291 159 28 chr4 6616150 6616470 -195711877 + L2 LINE L2 2259 2620 -694 542 284 157 25 chr4 6616510 6616904 -195711443 + L2 LINE L2 2804 3249 -64 1945 144 0 38 chr4 6618222 6618542 -195709805 - AluSx SINE Alu -4 308 1 1968 144 0 13 chr4 6619139 6619444 -195708903 + AluJb SINE Alu 1 301 -11 3087 102 61 5 chr4 6621604 6622044 -195706303 + MER4C LTR ERV1 1 465 0 1818 87 30 26 chr4 6622504 6622770 -195705577 + AluSx SINE Alu 36 302 -10 222 274 38 29 chr4 6623331 6623435 -195704912 - MIR SINE MIR -23 185 75 1233 141 34 43 chr4 6624204 6624392 -195703955 + MER2 DNA MER2_type 2 189 -156 1894 176 71 0 chr4 6624392 6624716 -195703631 + MER7A DNA MER2_type 1 345 -1 1233 141 34 43 chr4 6624716 6624761 -195703586 + MER2 DNA MER2_type 189 233 -112 705 119 0 0 chr4 6624765 6624866 -195703481 + AluSg/x SINE Alu 204 304 -6 665 167 0 18 chr4 6624866 6624980 -195703367 + MER2 DNA MER2_type 234 345 0 301 241 138 0 chr4 6625390 6625477 -195702870 - L2 LINE L2 -8 3264 3166 1892 119 10 42 chr4 6625568 6625879 -195702468 + AluSx SINE Alu 1 301 -11 1235 129 0 0 chr4 6625879 6626057 -195702290 + AluSg/x SINE Alu 134 311 -1 470 265 54 58 chr4 6626062 6626356 -195701991 + L1MC5 LINE L1 7238 7530 -431 1754 182 6 88 chr4 6626358 6626772 -195701575 + L1MB3 LINE L1 5744 6190 7 2252 99 0 7 chr4 6626772 6627074 -195701273 + AluSq SINE Alu 1 300 -13 1754 182 6 88 chr4 6627074 6627104 -195701243 + L1MB3 LINE L1 6190 6150 -33 383 67 34 157 chr4 6627104 6627193 -195701154 + MADE1 DNA Mariner 2 79 -1 1754 182 6 88 chr4 6627193 6627224 -195701123 + L1MB3 LINE L1 6149 6181 -2 441 251 23 69 chr4 6627224 6627399 -195700948 + L1MC5 LINE L1 7533 7699 -262 216 239 0 0 chr4 6628107 6628153 -195700194 + (CCG)n Simple_repeat Simple_repeat 2 47 0 568 195 86 29 chr4 6628231 6628405 -195699942 - MER96B DNA MER1_type? -233 184 1 804 249 66 8 chr4 6630072 6630313 -195698034 + MER112 DNA MER1_type 2 256 0 972 203 30 5 chr4 6630516 6630718 -195697629 - MIR SINE MIR -42 220 14 316 311 142 16 chr4 6631919 6632109 -195696238 - MIR SINE MIR -48 214 1 360 360 27 0 chr4 6632646 6632796 -195695551 + MIR SINE MIR 48 201 -61 1046 253 88 10 chr4 6633124 6633552 -195694795 + MLT1D LTR MaLR 3 505 0 2265 75 7 0 chr4 6633648 6633943 -195694404 - AluSp SINE Alu -16 297 1 282 268 10 21 chr4 6633943 6634040 -195694307 + MIR SINE MIR 167 262 0 213 275 43 0 chr4 6634323 6634392 -195693955 + MIR SINE MIR 101 172 -90 1822 168 29 9 chr4 6634782 6635128 -195693219 + MLT1B LTR MaLR 1 353 -37 846 147 8 0 chr4 6635133 6635262 -195693085 + MER6 DNA MER2_type 32 161 -704 765 273 84 12 chr4 6635278 6635600 -195692747 - MLT1D LTR MaLR -76 429 85 * 2067 115 81 56 chr4 6635579 6635909 -195692438 + MER6 DNA MER2_type 188 508 -357 2058 147 0 0 chr4 6635909 6636221 -195692126 + AluSx SINE Alu 1 312 0 2067 115 81 56 chr4 6636221 6636298 -195692049 + MER6 DNA MER2_type 508 865 0 714 269 145 31 chr4 6636762 6637040 -195691307 - LTR33A LTR ERVL -18 505 260 1411 281 36 25 chr4 6637040 6637478 -195690869 + LTR47B LTR ERVL 1 443 0 714 269 145 31 chr4 6637478 6637648 -195690699 - LTR33A LTR ERVL -263 260 6 449 322 39 30 chr4 6638578 6638777 -195689570 - MIR SINE MIR -54 208 9 2914 212 66 29 chr4 6639243 6639927 -195688420 + MER67C LTR ERV1 2 710 0 567 297 128 0 chr4 6640012 6640207 -195688140 + MIR SINE MIR 21 240 -22 284 333 0 0 chr4 6641662 6641743 -195686604 - MER81 DNA DNA -16 98 18 286 298 53 0 chr4 6644925 6645019 -195683328 - L2 LINE L2 -1 3312 3214 269 279 0 0 chr4 6645896 6645975 -195682372 + A-rich Low_complexity Low_complexity 1 79 0 1482 116 36 18 chr4 6646401 6646625 -195681722 - MER30 DNA MER1_type 0 230 3 425 313 55 0 chr4 6646979 6647107 -195681240 - MIR3 SINE MIR -6 202 68 220 277 189 14 chr4 6648227 6648375 -195679972 - L3 LINE CR1 -216 1361 1188 227 289 132 26 chr4 6648533 6648647 -195679700 - L2 LINE L2 -4 3268 3143 367 244 0 0 chr4 6648779 6648861 -195679486 + MIR SINE MIR 73 154 -108 628 314 51 8 chr4 6649488 6649743 -195678604 - L1ME3 LINE L1 -1 6161 5896 425 168 179 0 chr4 6649985 6650080 -195678267 - MER81 DNA DNA -1 113 2 694 257 38 16 chr4 6650429 6650612 -195677735 - MER5A DNA MER1_type 0 189 3 1910 103 57 0 chr4 6650793 6651075 -195677272 + AluSx SINE Alu 1 298 -14 290 181 14 14 chr4 6651137 6651209 -195677138 - L2 LINE L2 -277 2995 2924 195 270 79 0 chr4 6651292 6651355 -195676992 - L2 LINE L2 -556 2758 2691 347 288 183 0 chr4 6651412 6651565 -195676782 + MIR SINE MIR 79 259 -3 198 368 11 0 chr4 6651706 6651793 -195676554 + MIR SINE MIR 51 138 -124 478 238 13 64 chr4 6651994 6652180 -195676167 + MIR SINE MIR 5 181 -67 187 244 0 0 chr4 6652181 6652222 -195676125 - L2 LINE L2 -5 3267 3227 444 51 0 0 chr4 6652292 6652351 -195675996 + (CAAAA)n Simple_repeat Simple_repeat 4 62 0 538 304 134 5 chr4 6653114 6653331 -195675016 - MIR SINE MIR 0 262 18 738 278 52 0 chr4 6653837 6654031 -195674316 - MIR SINE MIR -51 211 8 1689 170 46 51 chr4 6654093 6654166 -195674181 + MLT2D LTR ERVL 3 75 -339 1926 129 4 0 chr4 6654166 6654466 -195673881 + AluSx SINE Alu 5 305 0 1689 170 46 51 chr4 6654466 6654785 -195673562 + MLT2D LTR ERVL 75 394 -20 531 249 103 12 chr4 6654852 6655017 -195673330 + MIR SINE MIR 73 252 -10 452 327 12 6 chr4 6660895 6661060 -195667287 - MIR3 SINE MIR -39 169 4 190 361 83 8 chr4 6661226 6661359 -195666988 - MIR SINE MIR -7 255 113 303 333 49 24 chr4 6661498 6661621 -195666726 + L2 LINE L2 3145 3270 -2 442 312 91 15 chr4 6662195 6662394 -195665953 - MIR SINE MIR -33 229 16 473 306 47 58 chr4 6663625 6663968 -195664379 + L2 LINE L2 2932 3270 -2 2057 117 10 0 chr4 6665233 6665523 -195662824 + AluSx SINE Alu 1 293 -19 547 205 18 0 chr4 6665712 6665824 -195662523 - MER81 DNA DNA 0 114 1 213 177 113 32 chr4 6667196 6667258 -195661089 + MIR SINE MIR 34 100 -108 498 337 150 13 chr4 6667654 6668266 -195660081 + L1ME4a LINE L1 5301 5996 -125 2098 110 0 25 chr4 6668659 6668978 -195659369 - AluSx SINE Alu -1 311 1 264 363 137 0 chr4 6669819 6670009 -195658338 - MIR SINE MIR 0 262 47 356 278 189 22 chr4 6670683 6670852 -195657495 - MIR SINE MIR -26 236 34 2207 79 3 55 chr4 6670852 6671182 -195657165 - AluSq SINE Alu 0 313 1 210 154 0 0 chr4 6671850 6671889 -195656458 + A-rich Low_complexity Low_complexity 1 39 0 2011 132 3 16 chr4 6672007 6672317 -195656030 + AluSx SINE Alu 1 306 -6 237 65 0 0 chr4 6673541 6673572 -195654775 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 243 275 154 0 chr4 6673990 6674081 -195654266 + L2 LINE L2 3168 3272 0 183 343 14 0 chr4 6674081 6674151 -195654196 - MIR SINE MIR -129 133 63 472 243 69 23 chr4 6674842 6675015 -195653332 + L1MB7 LINE L1 5943 6123 -61 250 254 34 68 chr4 6676833 6676951 -195651396 + L2 LINE L2 3158 3271 -1 618 236 23 23 chr4 6677281 6677455 -195650892 + MLT1H LTR MaLR 1 174 -375 585 176 17 17 chr4 6677570 6677689 -195650658 + MLT1H LTR MaLR 431 549 0 3574 139 13 8 chr4 6677853 6678452 -195649895 + LTR10E LTR ERV1 1 602 -31 659 245 13 0 chr4 6678626 6678781 -195649566 - MIR SINE MIR -95 167 11 868 234 92 77 chr4 6680599 6680924 -195647423 - MER102a DNA MER1_type 0 330 1 369 351 48 0 chr4 6681173 6681338 -195647009 + MIR SINE MIR 20 192 -70 290 333 25 44 chr4 6681392 6681596 -195646751 + L3 LINE CR1 1272 1471 -106 2115 103 17 0 chr4 6682507 6682798 -195645549 + AluSx SINE Alu 1 296 -16 213 319 138 11 chr4 6684862 6685050 -195643297 + MIR SINE MIR 36 247 -15 390 279 41 7 chr4 6685448 6685595 -195642752 - L2 LINE L2 0 3272 3121 405 291 159 28 chr4 6686120 6686440 -195641907 + L2 LINE L2 2259 2620 -694 542 284 157 25 chr4 6686480 6686874 -195641473 + L2 LINE L2 2804 3249 -64 1945 144 0 38 chr4 6688192 6688512 -195639835 - AluSx SINE Alu -4 308 1 1968 144 0 13 chr4 6689109 6689414 -195638933 + AluJb SINE Alu 1 301 -11 3087 102 61 5 chr4 6691574 6692014 -195636333 + MER4C LTR ERV1 1 465 0 1818 87 30 26 chr4 6692474 6692740 -195635607 + AluSx SINE Alu 36 302 -10 222 274 38 29 chr4 6693301 6693405 -195634942 - MIR SINE MIR -23 185 75 1263 142 34 39 chr4 6694174 6694361 -195633986 + MER2 DNA MER2_type 2 189 -156 1894 176 71 0 chr4 6694361 6694685 -195633662 + MER7A DNA MER2_type 1 345 -1 1263 142 34 39 chr4 6694685 6694730 -195633617 + MER2 DNA MER2_type 189 233 -112 705 119 0 0 chr4 6694734 6694835 -195633512 + AluSg/x SINE Alu 204 304 -6 665 167 0 18 chr4 6694835 6694949 -195633398 + MER2 DNA MER2_type 234 345 0 301 241 138 0 chr4 6695359 6695446 -195632901 - L2 LINE L2 -8 3264 3166 2182 110 3 16 chr4 6695537 6695854 -195632493 + AluSq SINE Alu 1 313 0 237 333 86 17 chr4 6695951 6696125 -195632222 + MIR SINE MIR 7 192 -70 2172 116 36 39 chr4 6696296 6696658 -195631689 - MER46B DNA MER2_type 0 236 1 1979 198 50 24 chr4 6696729 6697116 -195631231 + MLT1C LTR MaLR 1 403 -64 1989 142 13 3 chr4 6697116 6697425 -195630922 - AluJo SINE Alu 0 312 1 1979 198 50 24 chr4 6697425 6697492 -195630855 + MLT1C LTR MaLR 403 467 0 380 220 122 114 chr4 6697572 6697755 -195630592 + Charlie8 DNA MER1_type 244 431 -1986 1585 116 0 0 chr4 6697755 6697979 -195630368 + AluSg/x SINE Alu 80 303 -7 380 220 122 114 chr4 6697979 6698040 -195630307 + Charlie8 DNA MER1_type 431 490 -1927 591 175 0 0 chr4 6698902 6699022 -195629325 + (TGGA)n Simple_repeat Simple_repeat 3 122 0 204 67 0 0 chr4 6699441 6699471 -195628876 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 2085 128 60 31 chr4 6700084 6700437 -195627910 + THE1B LTR MaLR 1 363 -1 306 0 0 0 chr4 6700628 6700662 -195627685 + (CA)n Simple_repeat Simple_repeat 2 35 0 343 292 83 8 chr4 6700920 6701040 -195627307 - MIR SINE MIR -55 207 79 391 264 104 0 chr4 6701535 6701641 -195626706 + MIR SINE MIR 74 190 -72 1550 172 15 7 chr4 6702166 6702439 -195625908 - AluJb SINE Alu -27 285 11 563 271 21 23 chr4 6702439 6702630 -195625717 + L1MC4a LINE L1 5714 5819 -355 2302 93 0 0 chr4 6702769 6703069 -195625278 + AluSx SINE Alu 1 300 -12 2160 112 3 3 chr4 6703684 6703989 -195624358 + AluSp SINE Alu 1 305 -8 279 287 33 97 chr4 6704006 6704306 -195624041 - L1ME4a LINE L1 -205 5916 5636 252 0 0 0 chr4 6704615 6704643 -195623704 + (A)n Simple_repeat Simple_repeat 1 28 0 183 80 0 0 chr4 6704947 6704972 -195623375 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 328 324 155 16 chr4 6705600 6706161 -195622186 + L2 LINE L2 1762 2400 -914 1429 242 92 9 chr4 6706309 6706734 -195621613 + MLT1C LTR MaLR 8 467 0 358 327 39 54 chr4 6706892 6707097 -195621250 + MIR SINE MIR 51 252 -10 356 245 117 53 chr4 6707740 6707928 -195620419 - L2 LINE L2 -1 3312 3113 639 269 91 65 chr4 6708593 6708991 -195619356 + MLT1K LTR MaLR 169 576 -12 219 255 134 33 chr4 6709091 6709254 -195619093 - MIR3 SINE MIR -69 193 15 1344 206 73 42 chr4 6709433 6709606 -195618741 + MLT1C LTR MaLR 1 167 -300 2227 112 0 0 chr4 6709606 6709893 -195618454 + AluSx SINE Alu 19 305 -7 1344 206 73 42 chr4 6709893 6710170 -195618177 + MLT1C LTR MaLR 167 465 -2 375 276 83 47 chr4 6711100 6711292 -195617055 - MIR SINE MIR -58 204 6 222 365 47 31 chr4 6711498 6711690 -195616657 - L3 LINE CR1 -21 1556 1362 199 310 180 0 chr4 6712720 6712820 -195615527 + L2 LINE L2 2925 3042 -230 1921 149 40 7 chr4 6714359 6714661 -195613686 + AluJb SINE Alu 1 312 0 308 172 20 30 chr4 6714665 6714764 -195613583 + GA-rich Low_complexity Low_complexity 3 100 0 625 176 12 24 chr4 6714792 6714962 -195613385 + GA-rich Low_complexity Low_complexity 3 170 0 339 130 0 0 chr4 6714981 6715035 -195613312 + (GGAA)n Simple_repeat Simple_repeat 3 56 0 306 303 20 0 chr4 6715320 6715419 -195612928 - L1ME LINE L1 -430 5691 5591 579 286 83 43 chr4 6715435 6715784 -195612563 - L2 LINE L2 -26 3287 2925 278 330 95 5 chr4 6715856 6716056 -195612291 - L1ME LINE L1 -2336 5472 5255 2402 94 73 52 chr4 6716332 6716656 -195611691 - Tigger4(Zombi) DNA MER2_type 0 2731 2394 1585 204 18 0 chr4 6716656 6716940 -195611407 - AluJo SINE Alu -19 293 5 2402 94 73 52 chr4 6716940 6717042 -195611305 - Tigger4(Zombi) DNA MER2_type -337 2394 2296 1301 158 54 4 chr4 6717043 6717284 -195611063 - Tigger4(Zombi) DNA MER2_type -2477 254 2 2226 113 0 7 chr4 6717797 6718090 -195610257 + AluSq SINE Alu 2 292 -21 207 139 0 0 chr4 6718090 6718126 -195610221 + (GGGA)n Simple_repeat Simple_repeat 1 36 0 * 1121 95 17 20 chr4 6718120 6718416 -195609931 + (GAAA)n Simple_repeat Simple_repeat 1 296 0 698 260 65 29 chr4 6718433 6718710 -195609637 - L1ME3 LINE L1 -133 6098 5812 1092 289 68 50 chr4 6718762 6719516 -195608831 - L1ME3 LINE L1 -4064 2332 1566 297 241 23 0 chr4 6719541 6719628 -195608719 - L1ME LINE L1 -649 5590 5502 4806 261 82 29 chr4 6719770 6720887 -195607460 - L1MB7 LINE L1 -75 6109 5052 185 0 40 0 chr4 6720887 6720912 -195607435 + (TG)n Simple_repeat Simple_repeat 2 27 0 4806 261 82 29 chr4 6720912 6721232 -195607115 - L1MB7 LINE L1 -1132 5052 4750 2228 99 6 51 chr4 6721232 6721545 -195606802 + AluSx SINE Alu 1 299 -13 4806 261 82 29 chr4 6721545 6721906 -195606441 - L1MB7 LINE L1 -1434 4750 4409 1402 196 58 52 chr4 6721906 6722269 -195606078 + MLT1A1 LTR MaLR 1 365 0 4806 261 82 29 chr4 6722269 6722346 -195606001 - L1MB7 LINE L1 -1775 4409 4338 2299 70 0 0 chr4 6722346 6722618 -195605729 - AluY SINE Alu -1 310 39 185 0 40 0 chr4 6722624 6722649 -195605698 + (TTTTA)n Simple_repeat Simple_repeat 5 30 0 4806 261 82 29 chr4 6722649 6723758 -195604589 - L1MB7 LINE L1 -1850 4334 2957 1162 262 115 9 chr4 6723792 6724243 -195604104 - L1MB7 LINE L1 -3464 2682 2184 190 286 0 0 chr4 6724973 6725022 -195603325 + L2 LINE L2 3239 3287 -26 341 93 19 0 chr4 6726142 6726196 -195602151 + (TC)n Simple_repeat Simple_repeat 1 55 0 2140 156 9 69 chr4 6727003 6727438 -195600909 + MLT2D LTR ERVL 1 409 -5 223 297 22 22 chr4 6727441 6727532 -195600815 + MIR SINE MIR 106 196 -66 2482 173 34 30 chr4 6728303 6728750 -195599597 + L1MC3 LINE L1 6363 6814 -971 2478 73 0 3 chr4 6728750 6729051 -195599296 - AluY SINE Alu -4 307 8 2482 173 34 30 chr4 6729051 6729107 -195599240 + L1MC3 LINE L1 6814 6868 -917 1940 169 67 3 chr4 6729731 6730092 -195598255 + MLT1B LTR MaLR 7 390 0 220 274 38 28 chr4 6730092 6730198 -195598149 + MIR3 SINE MIR 91 197 -11 394 298 66 11 chr4 6730258 6730439 -195597908 - MIR SINE MIR -32 230 40 205 67 0 111 chr4 6730500 6730545 -195597802 + (CCCCAG)n Simple_repeat Simple_repeat 3 42 0 347 306 51 51 chr4 6731129 6731325 -195597022 - MIR SINE MIR -57 205 10 1135 118 0 12 chr4 6731539 6731708 -195596639 + MER4B LTR ERV1 3 169 -441 784 280 168 6 chr4 6731724 6732088 -195596259 + MER57B LTR ERV1 12 434 0 257 301 48 10 chr4 6732088 6732191 -195596156 - MIR SINE MIR -115 147 41 312 177 333 0 chr4 6732769 6732865 -195595482 - MER5A DNA MER1_type -22 167 40 277 295 69 29 chr4 6732949 6733122 -195595225 - MER5A DNA MER1_type -3 186 7 333 228 76 0 chr4 6733158 6733250 -195595097 - MIR SINE MIR -91 171 73 355 312 40 29 chr4 6733388 6733561 -195594786 + L2 LINE L2 3139 3313 0 440 344 36 0 chr4 6733581 6733773 -195594574 - MIR SINE MIR -10 252 54 300 327 156 4 chr4 6733765 6734028 -195594319 - L2 LINE L2 -1121 2193 1891 * 2162 111 33 13 chr4 6734752 6735058 -195593289 + AluSx SINE Alu 1 312 0 254 257 114 0 chr4 6735111 6735216 -195593131 - L2 LINE L2 -1 3271 3155 182 311 97 10 chr4 6736358 6736461 -195591886 - L2 LINE L2 -85 3228 3117 857 176 35 0 chr4 6736569 6736739 -195591608 - MER45A DNA AcHobo 0 178 3 8744 40 2 7 chr4 6736831 6737907 -195590440 - MER11C LTR ERVK 0 1071 1 753 287 163 23 chr4 6738415 6738858 -195589489 + MLT1D LTR MaLR 1 505 0 2343 82 6 19 chr4 6738887 6739204 -195589143 + AluSp SINE Alu 1 313 0 299 327 8 9 chr4 6739412 6739533 -195588814 - MIR SINE MIR -70 138 30 341 317 35 64 chr4 6739927 6740129 -195588218 + L1ME LINE L1 5592 5787 -334 206 330 32 0 chr4 6740446 6740540 -195587807 + MIR SINE MIR 154 250 -12 2331 109 3 0 chr4 6740546 6740848 -195587499 + AluSx SINE Alu 1 303 -9 236 175 0 0 chr4 6741099 6741139 -195587208 + L1ME4a LINE L1 5725 5764 -357 496 281 36 12 chr4 6741353 6741520 -195586827 - Charlie8 DNA MER1_type -2246 171 1 218 197 15 45 chr4 6741582 6741648 -195586699 + (TATATG)n Simple_repeat Simple_repeat 5 68 0 1954 127 67 0 chr4 6741693 6741976 -195586371 + AluSx SINE Alu 1 302 -10 939 251 8 16 chr4 6742398 6742641 -195585706 + MIR SINE MIR 21 261 -1 1806 170 3 13 chr4 6743169 6743475 -195584872 + AluJo SINE Alu 1 303 -9 208 293 0 0 chr4 6743680 6743738 -195584609 + MIR SINE MIR 19 76 -132 240 196 92 2 chr4 6744587 6744664 -195583683 - MIR SINE MIR -63 145 63 203 204 37 0 chr4 6745166 6745220 -195583127 + (CA)n Simple_repeat Simple_repeat 2 57 0 444 268 150 0 chr4 6746155 6746308 -195582039 + MER5B DNA MER1_type 3 178 0 192 294 88 0 chr4 6746377 6746479 -195581868 - MIR SINE MIR -65 143 33 242 337 47 0 chr4 6746542 6746628 -195581719 + L2 LINE L2 3143 3232 -40 2108 138 0 3 chr4 6748320 6748631 -195579716 + AluJb SINE Alu 1 310 -2 280 216 72 36 chr4 6748693 6748804 -195579543 - MIR3 SINE MIR -7 201 87 2357 79 3 25 chr4 6750085 6750400 -195577947 + AluY SINE Alu 1 308 -3 1961 157 3 0 chr4 6750541 6750841 -195577506 - AluJo SINE Alu -11 301 1 211 224 0 35 chr4 6750841 6750899 -195577448 - MIR SINE MIR -101 161 106 337 264 33 137 chr4 6750949 6751075 -195577272 + L1ME4a LINE L1 5945 6048 -73 1719 149 39 62 chr4 6751075 6751232 -195577115 - AluJb SINE Alu -10 302 154 2044 116 42 3 chr4 6751232 6751517 -195576830 - AluSx SINE Alu -16 296 1 1719 149 39 62 chr4 6751517 6751668 -195576679 - AluJb SINE Alu -158 154 1 337 264 33 137 chr4 6751668 6751723 -195576624 + L1ME4a LINE L1 6048 6107 -14 200 323 0 0 chr4 6751846 6751908 -195576439 - MIR SINE MIR -119 143 82 2389 79 3 10 chr4 6752102 6752407 -195575940 - AluSp SINE Alu -10 303 1 1686 173 8 4 chr4 6755003 6755269 -195573078 - AluJb SINE Alu -45 267 1 1178 150 0 11 chr4 6755316 6755503 -195572844 + AluSg/x SINE Alu 120 304 -6 244 281 34 22 chr4 6755516 6755605 -195572742 - L1ME4a LINE L1 -69 6052 5963 212 281 22 45 chr4 6755663 6755721 -195572626 + MIR SINE MIR 106 163 -99 1979 147 0 26 chr4 6755721 6756033 -195572314 + AluJo SINE Alu 1 304 -8 212 281 22 45 chr4 6756033 6756063 -195572284 + MIR SINE MIR 163 192 -70 278 238 188 0 chr4 6756163 6756264 -195572083 - MIR SINE MIR -55 153 34 2345 103 0 6 chr4 6756525 6756836 -195571511 - AluSx SINE Alu -3 309 1 2048 132 26 3 chr4 6756852 6757156 -195571191 - AluSx SINE Alu -1 311 1 1388 141 103 4 chr4 6757851 6758093 -195570254 - AluJo SINE Alu -10 302 37 391 265 99 88 chr4 6758120 6758403 -195569944 - L1MC5 LINE L1 -37 7924 7639 1814 142 7 10 chr4 6758919 6759215 -195569132 - AluJb SINE Alu -4 308 14 297 240 91 50 chr4 6759571 6759692 -195568655 - MIR SINE MIR -117 145 20 206 333 15 0 chr4 6760337 6760403 -195567944 + L2 LINE L2 3242 3308 -5 2227 156 59 45 chr4 6760562 6760793 -195567554 + MSTA LTR MaLR 1 242 -186 2268 99 0 0 chr4 6760793 6761087 -195567260 + AluSp SINE Alu 1 294 -19 2227 156 59 45 chr4 6761087 6761277 -195567070 + MSTA LTR MaLR 242 428 0 2455 93 100 28 chr4 6761585 6761984 -195566363 - MSTA LTR MaLR 0 428 1 2769 140 56 22 chr4 6764339 6764474 -195563873 + MER4C LTR ERV1 1 130 -335 1474 138 109 4 chr4 6764474 6764749 -195563598 + AluJb SINE Alu 1 304 -8 2769 140 56 22 chr4 6764749 6765063 -195563284 + MER4C LTR ERV1 130 465 0 360 301 48 14 chr4 6765071 6765217 -195563130 - MIR SINE MIR -56 206 56 2151 87 7 3 chr4 6765244 6765533 -195562814 - AluSx SINE Alu -20 292 3 578 240 157 23 chr4 6765583 6765800 -195562547 + MIR SINE MIR 17 262 0 380 199 202 17 chr4 6766184 6766319 -195562028 + AluSq SINE Alu 107 255 -48 1351 172 75 4 chr4 6766382 6766650 -195561697 + AluJo SINE Alu 2 288 -24 6969 131 38 26 chr4 6766652 6766861 -195561486 + HSMAR2 DNA Mariner 45 250 -1052 2215 100 0 10 chr4 6766861 6767162 -195561185 - AluSc SINE Alu -11 298 1 6969 131 38 26 chr4 6767162 6768195 -195560152 + HSMAR2 DNA Mariner 250 1301 -1 195 220 0 0 chr4 6769624 6769674 -195558673 + (CACG)n Simple_repeat Simple_repeat 2 51 0 256 250 97 0 chr4 6771759 6771831 -195556516 - L2 LINE L2 -1 3312 3234 253 469 40 6 chr4 6773790 6773965 -195554382 + MER5A DNA MER1_type 9 189 0 313 531 5 5 chr4 6774488 6774682 -195553665 - AluSx SINE Alu -119 183 13 613 414 13 4 chr4 6775574 6775806 -195552541 + AluSp SINE Alu 2 235 -78 630 405 9 4 chr4 6778264 6778496 -195549851 + AluSg SINE Alu 64 296 -14 23 0 0 0 chr4 6778548 6778571 -195549776 + GC_rich Low_complexity Low_complexity 1 23 0 249 486 0 7 chr4 6778717 6778857 -195549490 - L1PA8 LINE L1 -23 6149 6011 435 385 29 15 chr4 6779798 6780003 -195548344 - SVA Other Other -1045 341 134 198 0 0 0 chr4 6780100 6780122 -195548225 + (TAA)n Simple_repeat Simple_repeat 2 23 0 308 381 48 0 chr4 6780189 6780315 -195548032 + AluSq/x SINE Alu 2 133 -169 27 0 0 0 chr4 6781573 6781600 -195546747 + AT_rich Low_complexity Low_complexity 1 27 0 198 0 0 0 chr4 6782126 6782148 -195546199 + (CCG)n Simple_repeat Simple_repeat 2 23 0 728 343 88 62 chr4 6782566 6783167 -195545180 + L1M4 LINE L1 3676 4292 -1854 454 433 5 23 chr4 6783190 6783554 -195544793 + L1PA15 LINE L1 5807 6155 0 23 0 0 0 chr4 6783677 6783700 -195544647 + AT_rich Low_complexity Low_complexity 1 23 0 502 461 11 7 chr4 6783767 6784047 -195544300 - AluSq SINE Alu -30 283 3 430 307 20 0 chr4 6785652 6785753 -195542594 - SVA Other Other -1091 295 193 376 373 75 0 chr4 6785753 6785914 -195542433 + FAM SINE Alu 1 173 -2 344 493 11 14 chr4 6786020 6786298 -195542049 - AluSc SINE Alu -20 279 3 565 384 11 0 chr4 6787199 6787376 -195540971 - SVA Other Other -1076 310 132 246 271 42 0 chr4 6789188 6789284 -195539063 - MIR SINE MIR -134 128 29 181 405 100 5 chr4 6790402 6790622 -195537725 + L2 LINE L2 2470 2710 -604 229 294 147 10 chr4 6790721 6790823 -195537524 + L2 LINE L2 2947 3062 -251 199 196 22 43 chr4 6790932 6790978 -195537369 - MIR SINE MIR -216 46 2 188 283 50 17 chr4 6791088 6791148 -195537199 - MER5A DNA MER1_type 0 189 128 324 354 73 6 chr4 6791574 6791738 -195536609 - MIR SINE MIR -78 184 10 2000 79 0 18 chr4 6793677 6793954 -195534393 + AluY SINE Alu 27 298 -13 2276 73 0 16 chr4 6794425 6794738 -195533609 - AluSg SINE Alu -2 308 1 1474 185 10 27 chr4 6794873 6795165 -195533182 + AluJb SINE Alu 1 287 -25 319 280 110 8 chr4 6795897 6796015 -195532332 + L2 LINE L2 3143 3272 0 191 275 0 0 chr4 6796047 6796087 -195532260 - L2 LINE L2 -12 3301 3262 2293 78 0 10 chr4 6796538 6796834 -195531513 - AluSg SINE Alu -17 293 1 2306 93 0 0 chr4 6797235 6797535 -195530812 - AluSx SINE Alu -12 300 1 321 288 117 0 chr4 6797675 6797786 -195530561 + MIR3 SINE MIR 33 156 -52 316 330 69 12 chr4 6798048 6798221 -195530126 - MIR SINE MIR -64 198 16 1857 104 42 21 chr4 6799316 6799603 -195528744 - AluSc SINE Alu -16 293 1 185 313 48 0 chr4 6800097 6800180 -195528167 + MIR SINE MIR 154 240 -22 1924 116 46 0 chr4 6803702 6803986 -195524361 - AluSg SINE Alu -13 297 1 1707 184 0 9 chr4 6804404 6804719 -195523628 + AluJb SINE Alu 1 312 0 2356 79 0 3 chr4 6804819 6805122 -195523225 + AluSg SINE Alu 1 302 -8 266 190 16 38 chr4 6805352 6805536 -195522811 + (TG)n Simple_repeat Simple_repeat 1 180 0 494 199 11 43 chr4 6805628 6805814 -195522533 + (TG)n Simple_repeat Simple_repeat 1 180 0 208 162 78 36 chr4 6805769 6805936 -195522411 + (ATGTG)n Simple_repeat Simple_repeat 1 174 0 * 437 182 24 30 chr4 6805857 6806022 -195522325 + (TG)n Simple_repeat Simple_repeat 1 164 0 336 360 65 7 chr4 6806194 6806488 -195521859 - L2 LINE L2 -618 2696 2386 234 0 0 0 chr4 6806606 6806634 -195521713 + MLT2A2 LTR ERVL 4 31 -422 3531 79 24 31 chr4 6806636 6806976 -195521371 + HERVL LTR ERVL 5113 5454 -200 399 83 0 0 chr4 6806976 6807036 -195521311 + (TATG)n Simple_repeat Simple_repeat 1 60 0 2231 104 0 0 chr4 6807036 6807315 -195521032 - AluSx SINE Alu -33 279 1 3531 79 24 31 chr4 6807315 6807519 -195520828 + HERVL LTR ERVL 5452 5654 0 3563 38 11 27 chr4 6807519 6807970 -195520377 + MLT2A1 LTR ERVL 1 444 0 209 299 0 30 chr4 6808055 6808122 -195520225 - L2 LINE L2 -76 3196 3132 435 236 149 43 chr4 6809375 6809536 -195518811 - MER5B DNA MER1_type 0 178 1 533 335 62 0 chr4 6809992 6810186 -195518161 + MIR SINE MIR 27 232 -30 281 240 250 42 chr4 6810603 6810795 -195517552 - MIR SINE MIR -29 233 2 278 290 20 10 chr4 6810925 6811025 -195517322 + L2 LINE L2 2787 2887 -427 226 262 98 0 chr4 6811159 6811220 -195517127 + L2 LINE L2 3209 3275 -38 217 258 86 43 chr4 6811300 6811393 -195516954 + MIR SINE MIR 85 181 -81 322 252 159 27 chr4 6812139 6812311 -195516036 + MIR3 SINE MIR 47 241 -21 343 349 38 0 chr4 6813510 6813642 -195514705 + L2 LINE L2 3127 3263 -9 2026 158 0 3 chr4 6813947 6814257 -195514090 - AluJb SINE Alu -3 309 1 2298 111 3 0 chr4 6814590 6814887 -195513460 - AluSx SINE Alu -14 298 1 300 293 132 9 chr4 6816306 6816412 -195511935 + L2 LINE L2 3153 3271 -1 181 213 40 67 chr4 6816509 6816584 -195511763 + L2 LINE L2 3162 3234 -79 524 318 95 37 chr4 6816812 6817139 -195511208 + L2 LINE L2 2967 3312 -1 211 269 141 0 chr4 6817550 6817628 -195510719 + MIR SINE MIR 84 172 -90 238 277 256 15 chr4 6818032 6818169 -195510178 + L2 LINE L2 2926 3095 -177 259 253 0 25 chr4 6818223 6818302 -195510045 + L1ME LINE L1 5743 5819 -302 280 336 118 8 chr4 6818543 6818662 -195509685 + L2 LINE L2 3133 3264 -8 2450 90 0 3 chr4 6819807 6820117 -195508230 + AluSx SINE Alu 1 309 -3 2425 99 3 0 chr4 6820648 6820951 -195507396 - AluSx SINE Alu -8 304 1 394 276 111 50 chr4 6824821 6825002 -195503345 + MIR SINE MIR 20 211 -51 982 213 43 14 chr4 6825005 6825212 -195503135 + MIR SINE MIR 7 219 -43 1147 211 72 7 chr4 6825729 6826033 -195502314 - MER33 DNA MER1_type 0 324 1 2112 126 40 7 chr4 6826277 6826578 -195501769 - AluSx SINE Alu -1 311 1 198 273 18 0 chr4 6826599 6826654 -195501693 + MIR SINE MIR 159 214 -48 184 183 183 14 chr4 6826653 6826724 -195501623 - L3 LINE CR1 -880 697 615 * 184 294 272 11 chr4 6826696 6826788 -195501559 + L2 LINE L2 3149 3264 -8 269 215 0 43 chr4 6829790 6829883 -195498464 + (TA)n Simple_repeat Simple_repeat 2 90 0 21 0 0 0 chr4 6829997 6830018 -195498329 + AT_rich Low_complexity Low_complexity 1 21 0 2418 102 0 9 chr4 6830019 6830334 -195498013 + AluSx SINE Alu 1 312 0 25 0 0 0 chr4 6831459 6831484 -195496863 + AT_rich Low_complexity Low_complexity 1 25 0 298 200 0 0 chr4 6831525 6831580 -195496767 + MLT1E3 LTR MaLR 565 619 -5 701 255 126 69 chr4 6831585 6831613 -195496734 + L2 LINE L2 2724 2749 -564 750 238 37 0 chr4 6831613 6831777 -195496570 + FAM SINE Alu 1 170 -5 701 255 126 69 chr4 6831777 6832003 -195496344 + L2 LINE L2 2749 2961 -352 2102 99 10 42 chr4 6832003 6832316 -195496031 - AluSx SINE Alu -9 303 1 701 255 126 69 chr4 6832316 6832629 -195495718 + L2 LINE L2 2961 3313 0 249 200 0 0 chr4 6832646 6832691 -195495656 + L2 LINE L2 3210 3254 -18 238 196 20 0 chr4 6832975 6833026 -195495321 + L2 LINE L2 1875 1926 -1388 2250 116 0 13 chr4 6833196 6833506 -195494841 + AluSg SINE Alu 1 306 -4 2258 121 0 0 chr4 6833582 6833879 -195494468 - AluSx SINE Alu -15 297 1 185 208 267 50 chr4 6834417 6834518 -195493829 + MIR SINE MIR 20 142 -120 191 300 115 8 chr4 6834739 6834869 -195493478 + L2 LINE L2 2811 2954 -318 191 270 54 79 chr4 6835111 6835265 -195493082 - MIR SINE MIR -63 145 33 290 256 58 0 chr4 6835577 6835669 -195492678 + MIR SINE MIR 69 164 -68 1216 84 0 0 chr4 6835702 6835844 -195492503 - AluSq/x SINE Alu -170 142 1 363 313 88 19 chr4 6835845 6836005 -195492342 - MIR SINE MIR -80 182 12 201 208 75 0 chr4 6836042 6836095 -195492252 - L2 LINE L2 -74 3198 3142 219 218 218 16 chr4 6836112 6836236 -195492111 + L2 LINE L2 2888 3036 -236 808 188 28 28 chr4 6836589 6836765 -195491582 + MER20 DNA MER1_type 18 193 -26 299 240 247 27 chr4 6836939 6837089 -195491258 - MIR SINE MIR -73 189 7 252 240 0 0 chr4 6837150 6837200 -195491147 + L2 LINE L2 3137 3186 -86 202 243 0 81 chr4 6837590 6837664 -195490683 + MIR SINE MIR 75 142 -120 308 321 58 15 chr4 6838090 6838227 -195490120 - MIR SINE MIR -4 258 116 270 250 214 9 chr4 6838307 6838419 -195489928 - MIR SINE MIR -122 140 6 204 307 69 0 chr4 6838457 6838558 -195489789 - MER5A DNA MER1_type -45 144 37 1971 117 92 0 chr4 6839102 6839384 -195488963 - AluSx SINE Alu -4 308 1 2120 122 0 3 chr4 6841181 6841476 -195486871 - AluSx SINE Alu -18 294 1 346 283 92 11 chr4 6841851 6841976 -195486371 - MIR SINE MIR -58 150 51 1119 215 0 14 chr4 6842126 6842349 -195485998 + AluJo SINE Alu 88 307 -5 2432 93 0 0 chr4 6842400 6842701 -195485646 + AluSg SINE Alu 1 301 -9 1246 131 0 6 chr4 6842701 6842876 -195485471 + AluSg/x SINE Alu 134 307 -5 1678 176 13 20 chr4 6842890 6843196 -195485151 + AluJb SINE Alu 3 306 -6 2342 94 0 3 chr4 6843315 6843614 -195484733 + AluSq SINE Alu 1 298 -15 180 338 95 0 chr4 6843703 6843777 -195484570 + MIR SINE MIR 175 255 -7 946 170 12 29 chr4 6843955 6844126 -195484221 + FRAM SINE Alu 1 167 -9 1280 164 9 13 chr4 6844266 6844476 -195483871 + AluJo SINE Alu 86 296 -16 2464 85 0 0 chr4 6844476 6844782 -195483565 + AluSg SINE Alu 1 306 -4 1280 164 9 13 chr4 6844782 6844797 -195483550 + AluJo SINE Alu 296 310 -2 2243 91 7 0 chr4 6844955 6845242 -195483105 + AluSq SINE Alu 7 295 -18 391 297 24 91 chr4 6845741 6845950 -195482397 + MIR SINE MIR 57 251 -11 240 291 98 78 chr4 6846915 6847159 -195481188 + L2 LINE L2 3020 3268 -4 2289 93 0 35 chr4 6848251 6848562 -195479785 - AluSq SINE Alu -13 300 1 384 211 169 41 chr4 6848713 6848917 -195479430 - MIR SINE MIR -26 236 14 2373 96 3 0 chr4 6849334 6849637 -195478710 - AluSx SINE Alu -8 304 1 1706 137 56 14 chr4 6850244 6850412 -195477935 - AluJb SINE Alu -15 297 111 180 0 0 0 chr4 6850412 6850432 -195477915 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1706 137 56 14 chr4 6850432 6850548 -195477799 - AluJb SINE Alu -201 111 1 307 255 122 20 chr4 6850816 6850914 -195477433 - MIR SINE MIR -131 131 24 2180 131 3 6 chr4 6851100 6851414 -195476933 + AluSq SINE Alu 1 313 0 833 328 8 0 chr4 6851448 6851689 -195476658 + MIR SINE MIR 20 262 0 257 258 21 43 chr4 6851857 6851950 -195476397 + MIR3 SINE MIR 112 202 -6 2279 97 30 0 chr4 6851986 6852286 -195476061 - AluSc SINE Alu 0 309 1 558 179 125 9 chr4 6852324 6852436 -195475911 + FLAM_A SINE Alu 1 125 -8 6797 69 9 12 chr4 6855085 6855942 -195472405 + SVA Other Other 531 1385 -1 3747 205 105 42 chr4 6856052 6856530 -195471817 + L1ME1 LINE L1 2093 2540 -4000 1649 187 35 7 chr4 6856530 6856819 -195471528 + AluJo SINE Alu 1 297 -15 3747 205 105 42 chr4 6856819 6857901 -195470446 + L1ME1 LINE L1 2540 3553 -2987 2537 63 0 0 chr4 6857901 6858200 -195470147 - AluY SINE Alu -12 299 1 2202 128 0 0 chr4 6858208 6858505 -195469842 - AluSx SINE Alu -10 302 6 3747 205 105 42 chr4 6858505 6859206 -195469141 + L1ME1 LINE L1 3559 4536 -2004 1821 230 105 14 chr4 6859203 6859772 -195468575 + L1ME1 LINE L1 5922 6542 -18 * 367 254 148 28 chr4 6859809 6859951 -195468396 + L1MC/D LINE L1 5612 5770 -2038 1684 78 207 8 chr4 6860215 6860457 -195467890 - AluSg1 SINE Alu -19 290 1 27 0 0 0 chr4 6860457 6860484 -195467863 + AT_rich Low_complexity Low_complexity 1 27 0 243 362 0 29 chr4 6861328 6861433 -195466914 + MIR SINE MIR 29 130 -132 547 280 176 3 chr4 6862250 6862586 -195465761 - L1MC4 LINE L1 -89 7953 7560 959 187 101 86 chr4 6862588 6863005 -195465342 - LTR37B LTR ERV1 -45 423 1 970 256 140 47 chr4 6863071 6863664 -195464683 - L1ME1 LINE L1 -9 6157 5466 21 0 0 0 chr4 6864392 6864413 -195463934 + GC_rich Low_complexity Low_complexity 1 21 0 882 155 99 6 chr4 6866068 6866229 -195462118 - FRAM SINE Alu -1 175 1 2323 95 14 0 chr4 6867356 6867651 -195460696 + AluSx SINE Alu 1 299 -13 350 233 33 42 chr4 6869342 6869462 -195458885 - MIR SINE MIR -116 146 28 367 259 123 0 chr4 6869560 6869700 -195458647 + MIR SINE MIR 58 216 -46 2230 111 0 0 chr4 6870917 6871205 -195457142 + AluSx SINE Alu 1 288 -24 2101 101 6 54 chr4 6871756 6872072 -195456275 + AluSq SINE Alu 1 301 -12 2269 108 0 7 chr4 6872694 6872999 -195455348 - AluSc SINE Alu -6 303 1 2397 56 3 3 chr4 6873028 6873312 -195455035 - AluY SINE Alu -16 295 12 1629 60 0 0 chr4 6873748 6873965 -195454382 + GSAT Satellite centromeric 1 217 0 754 123 13 175 chr4 6874200 6874428 -195453919 + 7SK RNA RNA 1 191 -2 2370 90 3 0 chr4 6874532 6874831 -195453516 + AluSx SINE Alu 1 300 -12 1784 159 68 3 chr4 6874839 6875192 -195453155 + L1MB3 LINE L1 5775 6150 -33 2196 108 31 0 chr4 6875276 6875564 -195452783 + AluSg SINE Alu 1 297 -13 429 273 46 41 chr4 6875577 6875720 -195452627 + L1ME3A LINE L1 5959 6105 -65 2346 110 0 0 chr4 6875720 6876028 -195452319 - AluSx SINE Alu -4 308 1 429 273 46 41 chr4 6876028 6876078 -195452269 + L1ME3A LINE L1 6105 6153 -17 216 290 195 6 chr4 6876509 6876678 -195451669 + L2 LINE L2 2558 2758 -556 192 355 11 32 chr4 6876829 6876922 -195451425 + L2 LINE L2 2928 3018 -254 360 278 102 24 chr4 6877506 6877711 -195450636 - MIR SINE MIR -34 228 8 202 275 110 28 chr4 6878191 6878300 -195450047 + L2 LINE L2 3150 3267 -5 197 318 136 45 chr4 6880004 6880202 -195448145 - MIR SINE MIR -26 236 21 1907 146 3 23 chr4 6880910 6881212 -195447135 + AluSx SINE Alu 4 299 -13 2308 111 0 13 chr4 6882306 6882442 -195445905 + AluSx SINE Alu 1 137 -175 2246 112 0 3 chr4 6882442 6882738 -195445609 + AluSg SINE Alu 1 295 -15 2308 111 0 13 chr4 6882738 6882908 -195445439 + AluSx SINE Alu 137 303 -9 691 191 37 0 chr4 6883247 6883383 -195444964 + FLAM_C SINE Alu 2 142 -1 207 0 0 0 chr4 6883465 6883488 -195444859 + (TG)n Simple_repeat Simple_repeat 2 24 0 232 269 147 9 chr4 6885167 6885283 -195443064 + MIR SINE MIR 45 177 -69 2423 80 7 0 chr4 6885603 6885904 -195442443 - AluSq SINE Alu -10 303 1 351 270 81 9 chr4 6888582 6888693 -195439654 - MIR SINE MIR -72 136 18 262 0 53 0 chr4 6888729 6888767 -195439580 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 2038 125 0 4 chr4 6888772 6889051 -195439296 - AluSx SINE Alu -34 278 1 2403 53 13 20 chr4 6889212 6889514 -195438833 + AluY SINE Alu 1 300 -11 466 304 67 17 chr4 6889534 6889774 -195438573 + L1ME LINE L1 5532 5783 -338 25 31 0 0 chr4 6890157 6890189 -195438158 + AT_rich Low_complexity Low_complexity 1 32 0 524 282 73 10 chr4 6890342 6890548 -195437799 - MER20 DNA MER1_type 0 219 1 2612 40 0 20 chr4 6890937 6891241 -195437106 - AluY SINE Alu -13 298 1 332 330 51 25 chr4 6891336 6891533 -195436814 + MIR SINE MIR 59 260 -2 419 282 38 72 chr4 6893756 6894018 -195434329 + MER112 DNA MER1_type 2 254 -2 352 318 0 80 chr4 6894167 6894211 -195434136 - MIR3 SINE MIR -50 158 112 2222 124 3 0 chr4 6894211 6894517 -195433830 + AluSx SINE Alu 1 307 -5 352 318 0 80 chr4 6894517 6894623 -195433724 - MIR3 SINE MIR -96 112 20 2226 100 7 0 chr4 6896211 6896512 -195431835 - AluY SINE Alu -8 303 1 925 155 20 0 chr4 6897986 6898169 -195430178 - AluSg/x SINE Alu 0 316 131 263 326 10 10 chr4 6898169 6898267 -195430080 + MIR SINE MIR 109 206 -56 1905 182 3 0 chr4 6898616 6898918 -195429429 + AluJb SINE Alu 1 303 -9 27 73 0 0 chr4 6898959 6899014 -195429333 + AT_rich Low_complexity Low_complexity 1 55 0 2351 104 0 10 chr4 6900273 6900582 -195427765 + AluSg1 SINE Alu 1 306 -3 397 199 202 12 chr4 6903313 6903437 -195424910 - AluJb SINE Alu -8 294 174 675 273 116 40 chr4 6903455 6903902 -195424445 - L1MC5 LINE L1 -30 7931 7451 2133 158 0 0 chr4 6903913 6904223 -195424124 + AluJb SINE Alu 1 310 -2 1980 126 0 0 chr4 6904229 6904498 -195423849 + AluSg SINE Alu 1 269 -41 356 280 11 0 chr4 6905935 6906028 -195422319 - L2 LINE L2 -14 3299 3206 245 29 29 0 chr4 6906029 6906063 -195422284 + (TG)n Simple_repeat Simple_repeat 2 36 0 701 118 49 118 chr4 6906393 6906596 -195421751 - MER53 DNA DNA 0 189 1 191 250 39 0 chr4 6906970 6907022 -195421325 + L2 LINE L2 3217 3270 -2 521 130 65 16 chr4 6908116 6908544 -195419803 + (TG)n Simple_repeat Simple_repeat 1 448 0 282 147 54 92 chr4 6908476 6908660 -195419687 + (TAGTG)n Simple_repeat Simple_repeat 3 179 0 * 334 145 67 16 chr4 6908662 6909170 -195419177 + (TG)n Simple_repeat Simple_repeat 1 534 0 314 107 101 0 chr4 6909216 6909375 -195418972 + (TG)n Simple_repeat Simple_repeat 1 175 0 252 161 69 11 chr4 6909388 6909475 -195418872 + (TG)n Simple_repeat Simple_repeat 2 93 0 1638 170 4 0 chr4 6909926 6910197 -195418150 - AluSq SINE Alu -18 295 24 245 281 138 56 chr4 6910337 6910497 -195417850 + L2 LINE L2 2923 3095 -177 181 234 0 21 chr4 6911429 6911476 -195416871 - MIR SINE MIR -126 82 37 348 235 76 34 chr4 6912659 6912778 -195415569 + MIR SINE MIR 40 163 -99 289 308 100 15 chr4 6913440 6913570 -195414777 + MIR SINE MIR 52 192 -70 304 263 72 105 chr4 6913860 6913940 -195414407 + L2 LINE L2 3105 3186 -127 851 207 18 62 chr4 6913940 6914167 -195414180 - MER20 DNA MER1_type -2 217 1 304 263 72 105 chr4 6914167 6914295 -195414052 + L2 LINE L2 3186 3306 -7 222 108 27 0 chr4 6914362 6914399 -195413948 - MIR SINE MIR -62 146 109 539 214 48 8 chr4 6915633 6915759 -195412588 + MIR SINE MIR 40 170 -92 313 237 21 54 chr4 6916633 6916726 -195411621 + L2 LINE L2 3156 3245 -27 262 290 30 20 chr4 6917558 6917658 -195410689 - MIR SINE MIR -142 120 20 635 241 11 43 chr4 6917803 6917990 -195410357 - MIR SINE MIR -51 211 31 645 220 26 6 chr4 6919042 6919200 -195409147 + L1ME1 LINE L1 6025 6165 -1 1814 147 39 23 chr4 6919237 6919408 -195408939 - AluSx SINE Alu 0 312 132 207 0 0 0 chr4 6919408 6919431 -195408916 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1814 147 39 23 chr4 6919431 6919566 -195408781 - AluSx SINE Alu -180 132 1 443 314 84 30 chr4 6919566 6920026 -195408321 - L1M4 LINE L1 -2630 3516 3015 2133 103 3 3 chr4 6920026 6920328 -195408019 + AluSc SINE Alu 1 302 -7 443 314 84 30 chr4 6920328 6920426 -195407921 - L1M4 LINE L1 -3131 3015 2924 23 68 0 0 chr4 6920854 6920898 -195407449 + AT_rich Low_complexity Low_complexity 1 44 0 498 303 147 47 chr4 6921156 6921234 -195407113 + L1ME4a LINE L1 5617 5686 -435 2449 52 0 13 chr4 6921234 6921540 -195406807 + AluY SINE Alu 1 302 -9 498 303 147 47 chr4 6921540 6921821 -195406526 + L1ME4a LINE L1 5686 6012 -109 563 258 82 6 chr4 6921951 6922110 -195406237 - MIR SINE MIR -48 214 44 198 225 0 0 chr4 6922565 6922605 -195405742 - MIR SINE MIR -110 152 113 530 146 115 0 chr4 6922953 6923049 -195405298 - MER53 DNA DNA -82 107 1 452 253 266 0 chr4 6923217 6923375 -195404972 + MIR SINE MIR 38 237 -25 1922 184 34 50 chr4 6923782 6924200 -195404147 + MLT2D LTR ERVL 4 414 0 709 321 4 20 chr4 6925375 6925627 -195402720 - MIR SINE MIR 0 262 15 246 314 86 46 chr4 6926057 6926232 -195402115 - MLT1J1 LTR MaLR -264 182 1 891 160 20 85 chr4 6926325 6926439 -195401908 + MLT1B LTR MaLR 1 98 -292 2201 123 0 0 chr4 6926439 6926749 -195401598 + AluSx SINE Alu 1 310 -2 891 160 20 85 chr4 6926749 6926834 -195401513 + MLT1B LTR MaLR 98 187 -203 566 264 109 10 chr4 6928156 6928357 -195399990 - MLT1C LTR MaLR -7 460 240 806 96 52 0 chr4 6928405 6928520 -195399827 + L1PA11 LINE L1 6054 6174 0 2371 66 0 3 chr4 6929554 6929856 -195398491 - AluY SINE Alu -10 301 1 391 368 41 22 chr4 6929911 6930229 -195398118 - L1MC/D LINE L1 -2036 5772 5449 915 160 7 7 chr4 6930526 6930676 -195397671 - FRAM SINE Alu -15 151 2 511 246 12 76 chr4 6930723 6930894 -195397453 - L1ME3A LINE L1 -5 6165 6006 321 232 36 45 chr4 6930901 6931013 -195397334 - L1ME3A LINE L1 -401 5769 5659 217 217 29 14 chr4 6932621 6932690 -195395657 + (CATA)n Simple_repeat Simple_repeat 3 72 0 189 213 0 0 chr4 6932761 6932808 -195395539 + (CA)n Simple_repeat Simple_repeat 2 48 0 392 270 40 24 chr4 6932808 6932934 -195395413 - L1MC4 LINE L1 -130 7912 7785 789 196 35 30 chr4 6932936 6933135 -195395212 - MLT2D LTR ERVL -7 407 208 391 339 63 27 chr4 6933401 6933622 -195394725 + MIR SINE MIR 28 256 -6 1596 259 60 12 chr4 6934093 6934575 -195393772 + MLT1D LTR MaLR 1 505 0 1345 240 35 114 chr4 6934789 6935360 -195392987 + L2 LINE L2 2430 2955 -359 794 227 16 11 chr4 6935361 6935541 -195392806 + MLT1A1 LTR MaLR 1 181 -184 404 165 94 0 chr4 6935541 6935626 -195392721 + MER4A LTR ERV1 1 93 -571 1597 133 156 96 chr4 6935626 6936011 -195392336 + MER4A LTR ERV1 257 664 0 820 245 0 16 chr4 6936012 6936204 -195392143 + MLT1A1 LTR MaLR 177 365 0 298 289 12 0 chr4 6936204 6936287 -195392060 + L2 LINE L2 2954 3037 -276 237 265 59 29 chr4 6936324 6936426 -195391921 - LTR16C LTR ERVL -2 489 385 190 340 135 23 chr4 6936808 6937023 -195391324 + L2 LINE L2 3075 3313 0 1515 154 50 50 chr4 6937122 6937420 -195390927 - AluJo SINE Alu -14 298 1 229 305 53 23 chr4 6937621 6937752 -195390595 + L1ME4a LINE L1 5974 6108 -13 282 29 0 0 chr4 6938204 6938239 -195390108 + (TTCA)n Simple_repeat Simple_repeat 2 36 0 229 375 48 0 chr4 6938248 6938352 -195389995 - L2 LINE L2 -25 3288 3180 544 103 0 0 chr4 6938730 6938808 -195389539 + AluJb SINE Alu 154 231 -81 720 103 176 73 chr4 6938831 6938967 -195389380 - AluJo SINE Alu -161 151 2 1589 231 43 10 chr4 6938970 6939368 -195388979 - MER67A LTR ERV1 -128 415 5 1467 208 31 0 chr4 6939354 6939671 -195388676 - MLT1C LTR MaLR -140 327 1 * 1812 152 0 26 chr4 6939676 6939979 -195388368 - AluSx SINE Alu -17 295 1 1852 163 5 25 chr4 6940782 6941150 -195387197 + L1MA6 LINE L1 4915 5275 -871 2078 104 7 0 chr4 6941154 6941458 -195386889 + AluSg SINE Alu 1 306 0 406 194 153 0 chr4 6941477 6941575 -195386772 + L1MA6 LINE L1 5963 6075 -225 349 117 0 0 chr4 6941578 6941638 -195386709 - AluJo SINE Alu 0 302 243 1287 124 5 0 chr4 6941641 6941827 -195386520 - AluJo SINE Alu -125 187 1 1102 162 33 50 chr4 6941827 6942068 -195386279 + L1MA6 LINE L1 6062 6298 -2 233 263 187 43 chr4 6942289 6942420 -195385927 + MIR3 SINE MIR 32 163 -45 207 221 11 79 chr4 6942465 6942655 -195385692 + (AGGTG)n Simple_repeat Simple_repeat 4 180 0 230 224 22 62 chr4 6942693 6942872 -195385475 + (AGGTG)n Simple_repeat Simple_repeat 5 176 0 2129 182 45 9 chr4 6943564 6944008 -195384339 + MLT1C LTR MaLR 1 460 -7 682 250 7 0 chr4 6944624 6944768 -195383579 - MLT1C LTR MaLR -2 465 321 494 289 72 4 chr4 6944778 6945013 -195383334 + LTR33 LTR ERVL 235 485 -36 180 322 34 0 chr4 6945068 6945127 -195383220 + L2 LINE L2 3207 3267 -5 404 298 67 8 chr4 6946053 6946197 -195382150 + MIR SINE MIR 20 170 -56 378 283 20 108 chr4 6946590 6946841 -195381506 - L2 LINE L2 -91 3181 2953 2372 60 0 13 chr4 6947005 6947304 -195381043 + AluY SINE Alu 1 295 -16 1665 191 10 93 chr4 6947410 6947818 -195380529 - MLT1A2 LTR MaLR 0 374 1 361 267 199 6 chr4 6948651 6948812 -195379535 - MER117 DNA MER1_type -3 194 3 1506 213 33 0 chr4 6948901 6949201 -195379146 - AluJb SINE Alu 0 312 3 2086 92 0 7 chr4 6949207 6949526 -195378821 - AluSx SINE Alu 0 317 1 1273 213 84 3 chr4 6949948 6950244 -195378103 - MLT1C LTR MaLR -8 459 140 320 316 30 48 chr4 6950510 6950678 -195377669 + MIR SINE MIR 7 171 -91 247 306 24 0 chr4 6950755 6950840 -195377507 + L2 LINE L2 3226 3312 -1 2648 35 0 0 chr4 6950887 6951198 -195377149 + AluY SINE Alu 1 311 0 2048 245 32 4 chr4 6951216 6951372 -195376975 - L1MB8 LINE L1 -9 6169 6014 1407 252 39 120 chr4 6951372 6951825 -195376522 - L1MD1 LINE L1 -238 6073 5585 1853 155 0 3 chr4 6951825 6952122 -195376225 + AluJb SINE Alu 11 306 -6 1407 252 39 120 chr4 6952122 6952170 -195376177 - L1MD1 LINE L1 -726 5585 5535 1907 164 3 3 chr4 6952170 6952480 -195375867 - AluSx SINE Alu -2 310 1 1407 252 39 120 chr4 6952480 6952794 -195375553 - L1MD1 LINE L1 -776 5535 5323 8968 236 58 17 chr4 6952796 6953381 -195374966 - L1MD1 LINE L1 -1249 4966 4406 2505 64 0 3 chr4 6953381 6953693 -195374654 - AluY SINE Alu 0 311 1 8968 236 58 17 chr4 6953693 6956130 -195372217 - L1MD1 LINE L1 -1809 4406 1859 446 203 0 85 chr4 6956224 6956401 -195371946 - AluSg/x SINE Alu -4 306 145 313 329 61 61 chr4 6956808 6957088 -195371259 + L1MEd LINE L1 809 1088 -5031 1516 195 0 10 chr4 6957123 6957415 -195370932 - AluJo SINE Alu -23 289 1 437 234 188 8 chr4 6957433 6957561 -195370786 - MLT1C LTR MaLR -503 151 1 1266 253 160 39 chr4 6957561 6958230 -195370117 - L2 LINE L2 -586 2728 2141 1736 113 49 0 chr4 6958230 6958495 -195369852 + AluSg SINE Alu 33 310 0 1266 253 160 39 chr4 6958495 6958603 -195369744 - L2 LINE L2 -1173 2141 2047 1481 128 6 144 chr4 6958603 6958923 -195369424 + AluJb SINE Alu 1 276 -36 1266 253 160 39 chr4 6958923 6959075 -195369272 - L2 LINE L2 -1267 2047 1915 207 0 0 0 chr4 6959075 6959098 -195369249 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1266 253 160 39 chr4 6959098 6959289 -195369058 - L2 LINE L2 -1399 1915 1456 310 106 76 0 chr4 6959326 6959392 -195368955 + CT-rich Low_complexity Low_complexity 3 73 0 2355 108 0 0 chr4 6959456 6959751 -195368596 - AluSx SINE Alu -17 295 1 4246 165 45 12 chr4 6959783 6960609 -195367738 - L1MC1 LINE L1 0 6333 5481 794 186 3 43 chr4 6960687 6960706 -195367641 - MLT1A1 LTR MaLR 0 365 347 2367 94 3 19 chr4 6960706 6961024 -195367323 - AluSp SINE Alu 0 313 1 794 186 3 43 chr4 6961024 6961313 -195367034 - MLT1A1 LTR MaLR -18 347 1 366 262 210 15 chr4 6961335 6961606 -195366741 - L2 LINE L2 -1986 1328 1005 242 315 108 0 chr4 6962898 6963009 -195365338 + MIR3 SINE MIR 60 182 -26 215 284 196 7 chr4 6963591 6963739 -195364608 - L2 LINE L2 -228 3085 2910 849 200 51 0 chr4 6963912 6964107 -195364240 - MER3 DNA MER1_type -4 205 1 216 97 0 0 chr4 6964714 6964745 -195363602 + (TGAA)n Simple_repeat Simple_repeat 4 34 0 2275 109 3 0 chr4 6964988 6965292 -195363055 - AluSx SINE Alu -7 305 1 339 312 0 0 chr4 6967363 6967456 -195360891 + L2 LINE L2 2967 3059 -213 2681 48 3 3 chr4 6969274 6969587 -195358760 + AluSp SINE Alu 1 313 0 646 263 23 23 chr4 6969654 6969825 -195358522 - MER5B DNA MER1_type -5 173 3 370 310 41 35 chr4 6969900 6970045 -195358302 + L2 LINE L2 3167 3312 -1 2076 120 43 10 chr4 6970129 6970428 -195357919 - AluSg SINE Alu -1 309 1 361 242 62 4 chr4 6970493 6970609 -195357738 - MIR SINE MIR -62 146 30 2257 86 3 16 chr4 6970887 6971023 -195357324 + AluSx SINE Alu 1 137 -175 2470 67 0 3 chr4 6971023 6971320 -195357027 + AluY SINE Alu 1 296 -15 2257 86 3 16 chr4 6971320 6971487 -195356860 + AluSx SINE Alu 137 300 -12 672 315 67 10 chr4 6971973 6972287 -195356060 - L1ME3A LINE L1 -76 6094 5763 1661 74 30 0 chr4 6972515 6972717 -195355630 - AluSg/x SINE Alu -14 298 91 1905 105 86 4 chr4 6972723 6972990 -195355357 + AluSg SINE Alu 1 289 -21 306 67 22 0 chr4 6972990 6973035 -195355312 + Alu SINE Alu 1 46 -257 1595 260 115 50 chr4 6973035 6973208 -195355139 - L1ME3A LINE L1 -1427 4719 4559 2313 111 0 0 chr4 6973208 6973505 -195354842 + AluSx SINE Alu 1 297 -15 1595 260 115 50 chr4 6973505 6973703 -195354644 - L1ME3A LINE L1 -1587 4559 4375 2564 85 6 0 chr4 6973703 6974066 -195354281 - L1PA8 LINE L1 0 6172 5808 1595 260 115 50 chr4 6974066 6974765 -195353582 - L1ME3A LINE L1 -1771 4375 3579 2175 111 0 13 chr4 6974819 6975138 -195353209 + AluSx SINE Alu 5 312 0 639 198 48 0 chr4 6975198 6975324 -195353023 + FLAM_A SINE Alu 1 132 -1 280 245 53 0 chr4 6975570 6975664 -195352683 - L1ME3A LINE L1 -2573 3573 3475 720 217 44 6 chr4 6975982 6976162 -195352185 - MER5A DNA MER1_type 0 189 3 214 245 31 51 chr4 6976174 6976272 -195352075 + L2 LINE L2 3169 3264 -49 1134 146 34 0 chr4 6976643 6976821 -195351526 - AluSg/x SINE Alu 0 310 127 2397 107 0 0 chr4 6976821 6977130 -195351217 - AluSg1 SINE Alu 0 309 1 2638 19 6 35 chr4 6977147 6977462 -195350885 + AluY SINE Alu 1 306 -5 202 179 0 0 chr4 6977641 6977680 -195350667 + L2 LINE L2 3218 3256 -16 2214 102 0 14 chr4 6978419 6978712 -195349635 - AluSx SINE Alu -23 289 1 247 287 77 35 chr4 6979133 6979276 -195349071 + MIR SINE MIR 80 228 -34 355 279 74 16 chr4 6979808 6979930 -195348417 - L2 LINE L2 -5 3308 3180 333 241 58 0 chr4 6979951 6980038 -195348309 + MER69 DNA AcHobo 2435 2526 0 254 225 234 0 chr4 6980144 6980255 -195348092 - Charlie8 DNA MER1_type -2245 172 36 1468 159 40 0 chr4 6981478 6981705 -195346642 + AluJb SINE Alu 42 277 -35 206 0 69 0 chr4 6981712 6981741 -195346606 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 264 59 0 0 chr4 6982177 6982211 -195346136 + (CA)n Simple_repeat Simple_repeat 1 34 0 1750 166 6 32 chr4 6982228 6982542 -195345805 - AluJo SINE Alu -6 306 1 2662 20 0 7 chr4 6982697 6982992 -195345355 - AluYa5 SINE Alu -18 293 1 1921 158 0 32 chr4 6983889 6984199 -195344148 - AluJb SINE Alu -12 300 1 2166 97 7 7 chr4 6987613 6987903 -195340444 - AluSx SINE Alu -22 290 1 539 93 0 0 chr4 6988419 6988494 -195339853 - AluJ/FRAM SINE Alu -8 304 230 1068 259 15 23 chr4 6988624 6988967 -195339380 - L1MC4 LINE L1 -2 8040 7701 1192 112 0 12 chr4 6988968 6989129 -195339218 - AluSg/x SINE Alu -17 295 137 767 218 34 10 chr4 6989130 6989336 -195339011 - L1MC4 LINE L1 -414 7628 7418 1040 219 138 12 chr4 6989373 6989619 -195338728 - AluJo SINE Alu -30 282 6 1582 214 163 12 chr4 6989622 6990108 -195338239 - L1MC4 LINE L1 -654 7388 6830 366 303 68 25 chr4 6990377 6990539 -195337808 - MIR SINE MIR -74 188 20 2518 82 0 0 chr4 6990611 6990916 -195337431 - AluY SINE Alu -6 305 1 636 287 27 27 chr4 6992176 6992399 -195335948 - MIR SINE MIR -12 250 28 2484 80 0 0 chr4 6993213 6993512 -195334835 - AluY SINE Alu -12 299 1 935 261 30 4 chr4 6994016 6994250 -195334097 + MIR SINE MIR 2 241 -21 247 290 167 14 chr4 6994923 6995061 -195333286 + MIR SINE MIR 9 167 -95 809 250 11 0 chr4 6995449 6995633 -195332714 + MER5A DNA MER1_type 1 186 -3 382 200 265 6 chr4 6996176 6996346 -195332001 + L2 LINE L2 1915 2128 -1186 1363 59 53 0 chr4 6996383 6996570 -195331777 - MER107 DNA MER1_type 0 197 1 315 401 16 29 chr4 6997274 6997516 -195330831 + L1MDa LINE L1 21 259 -6281 2302 116 0 0 chr4 6997620 6997922 -195330425 - AluSx SINE Alu -1 311 10 975 227 74 83 chr4 6998404 6998680 -195329667 + L1MDa LINE L1 913 1190 -5351 2221 117 0 7 chr4 6998680 6999021 -195329326 - AluSx SINE Alu 0 312 1 2074 129 3 7 chr4 6999023 6999318 -195329029 - AluJb SINE Alu -18 294 1 975 227 74 83 chr4 6999318 6999616 -195328731 + L1MDa LINE L1 1191 1440 -5101 628 263 0 11 chr4 6999619 6999794 -195328553 + AluSq SINE Alu 2 174 -139 356 322 66 62 chr4 6999832 7000100 -195328247 - L1MCa LINE L1 -2745 3681 3410 189 0 0 0 chr4 7000100 7000121 -195328226 + (C)n Simple_repeat Simple_repeat 1 21 0 356 322 66 62 chr4 7000121 7000172 -195328175 - L1MCa LINE L1 -3016 3410 3361 29 90 0 0 chr4 7000375 7000453 -195327894 + AT_rich Low_complexity Low_complexity 1 78 0 518 296 70 58 chr4 7000500 7001303 -195327044 - L1MCa LINE L1 -4573 2034 1024 270 277 8 40 chr4 7001351 7001511 -195326836 + C-rich Low_complexity Low_complexity 1 154 0 221 278 8 48 chr4 7001701 7001827 -195326520 + CT-rich Low_complexity Low_complexity 2 122 0 2492 68 0 34 chr4 7002095 7002417 -195325930 - AluY SINE Alu 0 311 1 1683 137 91 4 chr4 7002792 7003055 -195325292 + AluJb SINE Alu 1 286 -26 2554 86 0 3 chr4 7003411 7003724 -195324623 - AluSx SINE Alu 0 312 1 263 254 160 41 chr4 7003935 7004104 -195324243 + MIR3 SINE MIR 3 191 -17 209 253 209 0 chr4 7004399 7004490 -195323857 - MIR SINE MIR -63 145 36 196 330 70 51 chr4 7005290 7005563 -195322784 + L2 LINE L2 2994 3271 -1 289 234 70 16 chr4 7005605 7005733 -195322614 - MIR3 SINE MIR -71 137 3 259 303 65 45 chr4 7005989 7006144 -195322203 - MIR3 SINE MIR -37 171 14 2450 75 7 0 chr4 7006278 7006572 -195321775 + AluSc SINE Alu 1 296 -13 255 276 20 51 chr4 7008869 7008967 -195319380 + MIR SINE MIR 160 254 -8 411 380 22 11 chr4 7009460 7009644 -195318703 - MIR SINE MIR -70 192 7 259 330 43 27 chr4 7009896 7010081 -195318266 - L2 LINE L2 -221 3051 2864 370 336 0 15 chr4 7010280 7010417 -195317930 - L2 LINE L2 -189 3083 2949 303 297 55 21 chr4 7011361 7011506 -195316841 + L1ME LINE L1 5592 5741 -380 2285 108 10 3 chr4 7011633 7011940 -195316407 + AluSc SINE Alu 1 309 0 457 311 79 6 chr4 7012140 7012317 -195316030 - MIR SINE MIR -63 199 10 228 313 15 0 chr4 7012699 7012766 -195315581 + L2 LINE L2 3201 3268 -4 866 264 35 9 chr4 7013278 7013505 -195314842 + MIR SINE MIR 27 259 -3 266 273 13 0 chr4 7013506 7013583 -195314764 + MER116 DNA Mariner 2 79 -1 1362 126 0 0 chr4 7013604 7013786 -195314561 - AluSx SINE Alu -19 293 112 940 81 0 0 chr4 7013941 7014052 -195314295 - AluSx SINE Alu -190 123 13 185 384 73 33 chr4 7015060 7015211 -195313136 + MIR SINE MIR 106 262 0 1092 176 39 5 chr4 7015821 7016026 -195312321 + MER20 DNA MER1_type 1 212 -7 209 354 135 25 chr4 7016210 7016529 -195311818 - L2 LINE L2 -1 3271 2918 360 206 63 48 chr4 7016947 7017073 -195311274 - L1MD3 LINE L1 -15 7980 7853 198 0 0 0 chr4 7017468 7017490 -195310857 + (AGCTG)n Simple_repeat Simple_repeat 3 24 0 1011 173 108 124 chr4 7017797 7018044 -195310303 - MLT1A1 LTR MaLR 0 365 124 2051 157 13 0 chr4 7018044 7018350 -195309997 - AluJo SINE Alu 0 312 3 1011 173 108 124 chr4 7018350 7018473 -195309874 - MLT1A1 LTR MaLR -241 124 1 232 343 112 12 chr4 7018496 7018747 -195309600 + L2 LINE L2 2970 3245 -27 198 0 0 0 chr4 7018757 7018779 -195309568 + (TGAA)n Simple_repeat Simple_repeat 1 22 0 396 287 115 6 chr4 7019458 7019632 -195308715 + MIR SINE MIR 70 262 0 203 226 113 0 chr4 7020180 7020233 -195308114 - L2 LINE L2 -40 3232 3174 677 248 26 9 chr4 7020233 7020449 -195307898 + MIR SINE MIR 14 235 -27 194 230 40 27 chr4 7021222 7021296 -195307051 - L2 LINE L2 -8 3264 3190 1170 121 11 0 chr4 7021425 7021599 -195306748 - THE1C LTR MaLR 0 375 200 1067 101 0 0 chr4 7021756 7021904 -195306443 - THE1C LTR MaLR -226 149 2 185 324 45 18 chr4 7022589 7022700 -195305647 - MIR3 SINE MIR -92 116 3 364 296 113 31 chr4 7022808 7022967 -195305380 + MIR3 SINE MIR 15 186 -22 2123 120 0 7 chr4 7023158 7023449 -195304898 - AluJb SINE Alu -23 289 1 291 256 26 13 chr4 7023487 7023595 -195304752 + MIR SINE MIR 38 140 -68 228 258 16 16 chr4 7024110 7024172 -195304175 + L2 LINE L2 3191 3252 -20 254 289 72 0 chr4 7024903 7024986 -195303361 + MIR SINE MIR 32 120 -142 181 282 100 27 chr4 7025552 7025662 -195302685 - MIR SINE MIR -68 140 23 469 276 73 55 chr4 7026015 7026112 -195302235 + L1MC4 LINE L1 7685 7779 -263 273 57 0 0 chr4 7026112 7026147 -195302200 + (TATG)n Simple_repeat Simple_repeat 2 36 0 1574 124 128 23 chr4 7026147 7026405 -195301942 - AluSx SINE Alu -27 285 1 469 276 73 55 chr4 7026405 7026650 -195301697 + L1MC4 LINE L1 7778 8034 -8 194 250 62 0 chr4 7027172 7027236 -195301111 + L2 LINE L2 2994 3061 -211 524 168 0 9 chr4 7028719 7028826 -195299521 + (TGG)n Simple_repeat Simple_repeat 1 106 0 342 0 0 0 chr4 7028948 7028986 -195299361 + (CA)n Simple_repeat Simple_repeat 1 38 0 1519 253 66 2 chr4 7028987 7029414 -195298933 - MLT1C LTR MaLR -8 459 6 3902 211 3 25 chr4 7029425 7029665 -195298682 - L1MB7 LINE L1 0 6184 5940 1950 155 0 32 chr4 7029665 7029981 -195298366 - AluJb SINE Alu -6 306 1 3902 211 3 25 chr4 7029981 7030591 -195297756 - L1MB7 LINE L1 -244 5940 5352 531 242 48 0 chr4 7030986 7031110 -195297237 - MER45A DNA AcHobo -47 131 2 326 322 34 27 chr4 7031480 7031626 -195296721 - MIR SINE MIR 0 262 116 264 159 48 0 chr4 7031717 7031780 -195296567 - MIR SINE MIR -138 124 59 840 275 90 62 chr4 7032381 7032791 -195295556 + MLT1D LTR MaLR 1 473 -32 14081 127 47 8 chr4 7032791 7032991 -195295356 - Tigger1 DNA MER2_type 0 2418 2227 1839 103 38 75 chr4 7032991 7033311 -195295036 + AluSx SINE Alu 1 309 0 14081 127 47 8 chr4 7033311 7035436 -195292911 - Tigger1 DNA MER2_type -191 2227 1 840 275 90 62 chr4 7035436 7035470 -195292877 + MLT1D LTR MaLR 473 505 0 529 270 65 56 chr4 7035763 7035978 -195292369 + MIR SINE MIR 12 228 -34 301 375 52 30 chr4 7036498 7036901 -195291446 + L2 LINE L2 2341 2752 -562 214 241 12 0 chr4 7037309 7037475 -195290872 + (AGGTG)n Simple_repeat Simple_repeat 4 171 0 259 229 38 0 chr4 7037507 7037804 -195290543 + (AGGTG)n Simple_repeat Simple_repeat 1 308 0 234 305 195 0 chr4 7038755 7038873 -195289474 - L1ME LINE L1 -439 5682 5542 2053 108 0 14 chr4 7038974 7039283 -195289064 + AluSx SINE Alu 24 312 0 189 146 49 49 chr4 7039919 7039960 -195288387 - MIR SINE MIR -62 146 106 1892 226 72 53 chr4 7040490 7041033 -195287314 + MLT2B3 LTR ERVL 2 554 0 607 253 27 32 chr4 7041057 7041121 -195287226 - MER5A DNA MER1_type -3 186 123 2563 51 0 3 chr4 7041121 7041415 -195286932 + AluY SINE Alu 1 293 -18 607 253 27 32 chr4 7041415 7041536 -195286811 - MER5A DNA MER1_type -66 123 2 2653 217 18 36 chr4 7042230 7042583 -195285764 - L1MEc LINE L1 -3310 2905 2547 2017 159 0 7 chr4 7042583 7042885 -195285462 - AluJb SINE Alu -12 300 1 2653 217 18 36 chr4 7042885 7043163 -195285184 - L1MEc LINE L1 -3668 2547 2332 2151 154 25 3 chr4 7043163 7043520 -195284827 + MLT1A1 LTR MaLR 1 365 0 2653 217 18 36 chr4 7043520 7043710 -195284637 - L1MEc LINE L1 -3883 2332 2140 191 261 67 60 chr4 7045155 7045289 -195283058 + L3 LINE CR1 1440 1574 -3 464 274 79 70 chr4 7045301 7045629 -195282718 - L2 LINE L2 -14 3258 2928 459 295 53 14 chr4 7045986 7046193 -195282154 - L1MA9 LINE L1 -57 6255 6041 343 237 4 24 chr4 7047289 7047390 -195280957 - MIR SINE MIR -46 162 61 987 195 56 53 chr4 7047450 7047669 -195280678 - MER33 DNA MER1_type -2261 324 101 2333 88 0 0 chr4 7047669 7047988 -195280359 - AluSq SINE Alu 0 319 1 987 195 56 53 chr4 7047988 7048090 -195280257 - MER33 DNA MER1_type -2484 101 1 286 313 47 16 chr4 7048271 7048399 -195279948 - MIR SINE MIR -88 174 43 * 326 256 195 46 chr4 7048382 7048644 -195279703 - L2 LINE L2 0 3313 3013 2014 159 38 28 chr4 7048646 7049201 -195279146 + MLT2A2 LTR ERVL 1 554 0 193 386 47 0 chr4 7049201 7049328 -195279019 - L2 LINE L2 -258 3014 2882 1785 203 53 36 chr4 7049595 7050062 -195278285 + L1MB5 LINE L1 5694 6168 -6 313 280 38 48 chr4 7050834 7050978 -195277369 - MIR SINE MIR -62 146 2 542 193 16 0 chr4 7051046 7051184 -195277163 + L1MB4 LINE L1 6035 6177 -6 335 349 48 0 chr4 7051205 7051331 -195277016 + L1 LINE L1 2706 2837 -3309 763 220 48 0 chr4 7051522 7051690 -195276657 - MER58A DNA MER1_type 0 224 49 244 111 0 0 chr4 7051959 7051995 -195276352 - MADE1 DNA Mariner -37 43 8 2342 87 7 23 chr4 7052327 7052636 -195275711 + AluSq SINE Alu 1 304 -9 270 273 67 16 chr4 7052898 7053033 -195275314 - MIR SINE MIR -56 152 11 323 281 144 14 chr4 7053207 7053353 -195274994 - MIR SINE MIR -74 188 24 258 160 200 10 chr4 7053441 7053541 -195274806 - MIR SINE MIR -117 145 27 30 0 0 0 chr4 7055479 7055509 -195272838 + GC_rich Low_complexity Low_complexity 1 30 0 194 0 39 0 chr4 7056546 7056572 -195271775 + (CCCCCG)n Simple_repeat Simple_repeat 3 29 0 194 318 18 36 chr4 7056890 7057000 -195271347 - MIR SINE MIR -114 148 41 466 250 16 16 chr4 7057125 7057253 -195271094 - L2 LINE L2 -6 3307 3180 801 254 118 16 chr4 7057496 7057811 -195270536 - MLT1I LTR MaLR 0 409 63 1977 186 13 55 chr4 7058076 7058534 -195269813 + MLT1C LTR MaLR 6 444 -23 357 292 119 69 chr4 7058548 7058909 -195269438 - MLT1J LTR MaLR -10 501 111 2234 128 0 0 chr4 7058909 7059206 -195269141 - AluSx SINE Alu -15 297 1 357 292 119 69 chr4 7059206 7059307 -195269040 - MLT1J LTR MaLR -400 111 16 1327 229 81 28 chr4 7059314 7059820 -195268527 - MER69 DNA AcHobo -5 2521 1989 184 265 60 99 chr4 7059905 7060056 -195268291 - MER5A DNA MER1_type -7 182 38 567 259 56 16 chr4 7060142 7060439 -195267908 - MER69 DNA AcHobo -1998 528 166 1909 163 67 0 chr4 7060440 7060796 -195267551 + MLT1B LTR MaLR 1 380 -10 376 269 19 0 chr4 7060792 7060900 -195267447 - MER69 DNA AcHobo -1053 173 64 * 259 207 52 0 chr4 7061149 7061207 -195267140 + L3 LINE CR1 1335 1395 -182 442 290 97 5 chr4 7061306 7061492 -195266855 + MIR SINE MIR 3 205 -57 1045 216 110 49 chr4 7061499 7061907 -195266440 - MLT1C LTR MaLR -4 463 25 397 318 163 25 chr4 7062271 7062418 -195265929 - L2 LINE L2 -38 3234 3109 1506 188 9 59 chr4 7062418 7062738 -195265609 + AluJo SINE Alu 1 304 -8 397 318 163 25 chr4 7062738 7062867 -195265480 - L2 LINE L2 -163 3109 2920 1931 153 40 0 chr4 7063333 7063633 -195264714 - AluJb SINE Alu 0 312 1 293 239 99 0 chr4 7063662 7063733 -195264614 - MIR SINE MIR -154 108 31 507 254 154 29 chr4 7063755 7063865 -195264482 - MIR SINE MIR 0 262 167 2264 115 7 0 chr4 7063865 7064169 -195264178 + AluSx SINE Alu 1 306 -6 507 254 154 29 chr4 7064169 7064290 -195264057 - MIR SINE MIR -95 167 4 341 293 34 27 chr4 7064340 7064487 -195263860 + MIR3 SINE MIR 3 150 -58 224 366 142 6 chr4 7064503 7064686 -195263661 + MIR SINE MIR 38 245 -17 934 192 315 45 chr4 7064875 7065250 -195263097 + L1MD2 LINE L1 5862 6337 -22 1952 123 0 42 chr4 7065403 7065721 -195262626 + AluSx SINE Alu 11 316 0 320 307 47 8 chr4 7065874 7066001 -195262346 - L1ME4a LINE L1 -3 6118 5987 180 77 0 0 chr4 7066202 7066228 -195262119 + (CATA)n Simple_repeat Simple_repeat 3 28 0 323 295 63 48 chr4 7066480 7066536 -195261811 - L1ME4a LINE L1 -459 5662 5608 1984 128 29 0 chr4 7066536 7066844 -195261503 - AluSx SINE Alu 0 316 1 323 295 63 48 chr4 7066844 7066870 -195261477 - L1ME4a LINE L1 -513 5608 5584 778 169 62 6 chr4 7066870 7067047 -195261300 - L1MA5 LINE L1 -4 6296 6110 2397 76 0 48 chr4 7067053 7067368 -195260979 + AluSq SINE Alu 1 300 -13 323 295 63 48 chr4 7067368 7067574 -195260773 - L1ME4a LINE L1 -541 5580 5360 323 315 0 22 chr4 7067584 7067676 -195260671 - L1MC4 LINE L1 -1339 6703 6614 372 22 0 0 chr4 7068272 7068317 -195260030 + (CA)n Simple_repeat Simple_repeat 2 46 0 392 262 52 64 chr4 7068790 7068859 -195259488 - L1ME LINE L1 -451 5788 5720 846 219 63 0 chr4 7068859 7069064 -195259283 - MER20 DNA MER1_type 0 219 2 392 262 52 64 chr4 7069064 7069166 -195259181 - L1ME LINE L1 -519 5720 5619 1472 204 24 21 chr4 7069175 7069508 -195258839 + MLT1A1 LTR MaLR 1 334 -31 2539 87 0 0 chr4 7069621 7069930 -195258417 - AluSq SINE Alu -4 309 1 335 148 0 19 chr4 7070019 7070073 -195258274 + Alu SINE Alu 1 53 -247 337 295 12 42 chr4 7070304 7070576 -195257771 + CT-rich Low_complexity Low_complexity 1 263 0 1406 163 0 22 chr4 7070728 7070955 -195257392 + AluJo SINE Alu 72 293 -19 1234 289 84 29 chr4 7070969 7071698 -195256649 - L1ME LINE L1 -1011 5204 4436 426 297 71 62 chr4 7071721 7071843 -195256504 - L1MEc LINE L1 -3481 2734 2615 3287 164 26 53 chr4 7071843 7071865 -195256482 + L1MB3 LINE L1 5447 5468 -715 1683 208 43 3 chr4 7071865 7072212 -195256135 + MLT1A1 LTR MaLR 1 361 -4 3287 164 26 53 chr4 7072212 7072946 -195255401 + L1MB3 LINE L1 5468 6183 0 426 297 71 62 chr4 7072946 7073497 -195254850 - L1MEc LINE L1 -3600 2615 2093 806 178 89 0 chr4 7073654 7073845 -195254502 + L1MB3 LINE L1 5833 6040 -143 348 231 23 95 chr4 7073876 7074097 -195254250 - L1MEc LINE L1 -3173 3042 2838 * 1017 335 44 26 chr4 7074091 7074822 -195253525 - L1MEc LINE L1 -5546 850 107 228 217 24 24 chr4 7074859 7074942 -195253405 - HAL1 LINE L1 -935 1572 1490 567 248 19 6 chr4 7074967 7075128 -195253219 - MER104 DNA Tc2 -17 163 1 1422 272 50 75 chr4 7075238 7075558 -195252789 - L1MEd LINE L1 -4866 1253 926 648 222 0 0 chr4 7075558 7075710 -195252637 - FLAM_A SINE Alu 0 152 1 1422 272 50 75 chr4 7075710 7076257 -195252090 - L1MEd LINE L1 -5193 926 407 251 289 61 37 chr4 7076538 7076947 -195251400 - L1M4 LINE L1 -1100 5046 4628 212 330 29 19 chr4 7077026 7077129 -195251218 + MIR3 SINE MIR 91 194 -14 1510 200 31 7 chr4 7077198 7077488 -195250859 - AluJo SINE Alu -15 297 1 349 255 10 31 chr4 7077565 7077663 -195250684 - MIR SINE MIR -70 192 97 509 268 153 10 chr4 7077800 7078009 -195250338 - MIR SINE MIR 0 262 24 789 200 87 20 chr4 7079055 7079250 -195249097 - MLT1J LTR MaLR -114 397 190 616 280 100 4 chr4 7079378 7079617 -195248730 - MIR SINE MIR 0 262 1 1361 146 10 5 chr4 7079741 7079963 -195248384 + AluJb SINE Alu 86 308 0 1200 223 57 38 chr4 7079979 7080346 -195248001 - MLT1A2 LTR MaLR 0 374 1 443 74 0 158 chr4 7081034 7081129 -195247218 - MADE1 DNA Mariner 0 80 1 628 121 0 0 chr4 7081230 7081321 -195247026 + AluJb SINE Alu 199 289 -23 184 161 0 0 chr4 7082163 7082194 -195246153 - L2 LINE L2 -19 3294 3264 317 318 54 8 chr4 7082614 7082743 -195245604 + L2 LINE L2 3115 3249 -23 602 287 35 10 chr4 7082860 7083062 -195245285 - MIR SINE MIR -12 250 44 181 274 68 14 chr4 7083208 7083281 -195245066 + MIR SINE MIR 59 135 -73 225 288 0 0 chr4 7084179 7084238 -195244109 - MIR SINE MIR -112 150 92 303 339 25 8 chr4 7084984 7085105 -195243242 - L2 LINE L2 -10 3303 3181 188 289 0 0 chr4 7086007 7086059 -195242288 + L3 LINE CR1 1022 1073 -504 393 298 140 0 chr4 7086059 7086237 -195242110 + L3 LINE CR1 1333 1535 -42 392 231 196 7 chr4 7086749 7086892 -195241455 - MER5A DNA MER1_type -6 183 14 286 259 52 26 chr4 7087138 7087254 -195241093 + LTR16C LTR ERVL 353 471 -20 650 300 23 9 chr4 7087803 7088023 -195240324 + MIR SINE MIR 21 243 -19 1007 231 5 0 chr4 7088100 7088303 -195240044 - MER58A DNA MER1_type 0 224 21 420 299 130 35 chr4 7089924 7090208 -195238139 + L2 LINE L2 3003 3313 0 282 295 49 25 chr4 7090548 7090670 -195237677 + MIR SINE MIR 60 184 -78 250 214 60 86 chr4 7090697 7090814 -195237533 + L2 LINE L2 3016 3129 -143 247 166 33 44 chr4 7090866 7091047 -195237300 + (CA)n Simple_repeat Simple_repeat 2 180 0 194 191 43 21 chr4 7091722 7091769 -195236578 + MIR3 SINE MIR 114 161 -47 617 242 47 43 chr4 7091802 7092013 -195236334 - L1MB7 LINE L1 -14 6166 5953 448 243 96 0 chr4 7092120 7092297 -195236050 + MIR SINE MIR 50 243 -19 2176 210 48 95 chr4 7092490 7093181 -195235166 + L1MB8 LINE L1 5480 6136 -42 1657 180 25 3 chr4 7093181 7093499 -195234848 - AluJb SINE Alu 0 312 1 2176 210 48 95 chr4 7093499 7093541 -195234806 + L1MB8 LINE L1 6136 6178 0 792 280 24 0 chr4 7094151 7094358 -195233989 - MIR SINE MIR -38 224 13 260 336 32 0 chr4 7094408 7094533 -195233814 + L1ME4a LINE L1 5993 6121 0 2255 98 0 7 chr4 7094560 7094867 -195233480 + AluSx SINE Alu 1 305 0 2219 128 0 0 chr4 7094907 7095211 -195233136 + AluSx SINE Alu 1 304 -8 255 250 18 36 chr4 7095338 7095450 -195232897 + (TCTA)n Simple_repeat Simple_repeat 4 113 0 192 163 0 0 chr4 7095452 7095495 -195232852 + GA-rich Low_complexity Low_complexity 2 44 0 234 293 13 0 chr4 7095542 7095617 -195232730 - L1MB7 LINE L1 -258 5863 5788 628 133 0 0 chr4 7095655 7095767 -195232580 - AluSx SINE Alu 0 302 191 1111 106 0 0 chr4 7095768 7095909 -195232438 - AluSx SINE Alu -172 141 1 278 349 108 5 chr4 7096093 7096288 -195232059 + MIR SINE MIR 14 228 -34 193 254 15 30 chr4 7096886 7096953 -195231394 + MIR SINE MIR 81 146 -62 1575 148 121 8 chr4 7097024 7097280 -195231067 - AluSg SINE Alu -25 285 1 512 194 8 0 chr4 7097401 7097535 -195230812 + (TTTA)n Simple_repeat Simple_repeat 4 138 0 195 295 64 13 chr4 7097931 7098009 -195230338 - L2 LINE L2 -1 3271 3190 2498 56 7 13 chr4 7098408 7098710 -195229637 - AluY SINE Alu -11 300 1 290 321 71 9 chr4 7100026 7100138 -195228209 - L2 LINE L2 -1 3271 3153 315 221 0 0 chr4 7100578 7100664 -195227683 + (TG)n Simple_repeat Simple_repeat 1 86 0 336 247 12 0 chr4 7101057 7101138 -195227209 - LTR16C LTR ERVL 0 491 410 2913 148 60 4 chr4 7101163 7101663 -195226684 - LTR10A LTR ERV1 -81 528 1 250 274 179 12 chr4 7101706 7101874 -195226473 - LTR16C LTR ERVL -91 400 205 277 175 113 25 chr4 7102986 7103066 -195225281 + MER53 DNA DNA 1 87 -102 3333 159 11 15 chr4 7103067 7103713 -195224634 + MER50 LTR ERV1 3 724 -10 547 121 103 52 chr4 7103696 7103781 -195224566 - MER53 DNA DNA -67 122 28 * 3252 73 14 2 chr4 7103781 7104220 -195224127 - MLT2A1 LTR ERVL 0 444 1 547 121 103 52 chr4 7104220 7104250 -195224097 - MER53 DNA DNA -161 28 1 250 336 29 10 chr4 7104257 7104361 -195223986 - MIR3 SINE MIR -35 173 68 272 282 87 28 chr4 7104671 7104814 -195223533 + MIR SINE MIR 58 210 -52 460 312 74 0 chr4 7105425 7105627 -195222720 + MER112 DNA MER1_type 32 248 -12 5056 184 36 9 chr4 7105800 7106887 -195221460 + MER45R DNA AcHobo 458 1573 -8 191 284 91 45 chr4 7106995 7107083 -195221264 + MIR SINE MIR 22 113 -95 411 213 11 0 chr4 7107188 7107282 -195221065 + MER5A DNA MER1_type 12 106 -83 1877 165 3 34 chr4 7107638 7107960 -195220387 - AluJb SINE Alu 0 312 1 260 302 35 35 chr4 7108108 7108224 -195220123 + MIR3 SINE MIR 72 187 -21 328 275 9 46 chr4 7108514 7108623 -195219724 - MIR SINE MIR -57 151 47 2164 104 21 3 chr4 7109019 7109308 -195219039 + AluSg SINE Alu 1 294 -16 739 248 169 12 chr4 7109498 7110065 -195218282 - L2 LINE L2 -18 3295 2624 231 232 49 61 chr4 7110440 7110522 -195217825 + MER5B DNA MER1_type 68 148 -30 266 229 105 67 chr4 7110567 7110672 -195217675 + MIR SINE MIR 30 138 -70 355 291 185 7 chr4 7111002 7111153 -195217194 - MER5A DNA MER1_type -8 181 4 188 317 0 0 chr4 7111184 7111244 -195217103 + MER5A DNA MER1_type 128 187 -2 566 323 32 32 chr4 7111506 7111723 -195216624 - MIR SINE MIR -6 256 40 547 314 101 18 chr4 7111723 7112051 -195216296 - MLT1J2 LTR MaLR 0 450 96 1659 127 3 67 chr4 7112072 7112241 -195216106 - AluJo SINE Alu -46 266 121 2200 131 49 25 chr4 7112241 7112607 -195215740 + THE1C LTR MaLR 1 375 0 1659 127 3 67 chr4 7112607 7112721 -195215626 - AluJo SINE Alu -191 121 1 243 306 111 9 chr4 7112737 7112845 -195215502 - L3 LINE CR1 -3 1574 1456 333 191 0 0 chr4 7113151 7113219 -195215128 + MLT1C LTR MaLR 60 127 -263 284 191 32 0 chr4 7113237 7113300 -195215047 - MER50 LTR ERV1 -660 74 10 501 248 108 62 chr4 7113308 7113356 -195214991 + MLT1C LTR MaLR 132 176 -291 2061 117 27 0 chr4 7113356 7113654 -195214693 + AluSx SINE Alu 4 309 -3 501 248 108 62 chr4 7113654 7113911 -195214436 + MLT1C LTR MaLR 176 451 -16 664 267 121 7 chr4 7114094 7114404 -195213943 - L2 LINE L2 -302 3011 2670 255 31 0 0 chr4 7114411 7114443 -195213904 + (TTCA)n Simple_repeat Simple_repeat 3 34 0 193 279 207 0 chr4 7114527 7114638 -195213709 - L2 LINE L2 -248 3065 2932 1885 147 20 0 chr4 7114832 7115131 -195213216 - AluSx SINE Alu -2 310 6 1022 75 0 61 chr4 7115133 7115280 -195213067 - AluSq/x SINE Alu -174 138 1 238 229 0 0 chr4 7115636 7115684 -195212663 + MIR SINE MIR 78 125 -137 2085 101 34 0 chr4 7115748 7116044 -195212303 + AluSx SINE Alu 1 306 -6 2376 51 34 0 chr4 7116044 7116338 -195212009 + AluY SINE Alu 1 304 -7 210 255 0 0 chr4 7116403 7116450 -195211897 + MIR SINE MIR 123 169 -93 1403 141 33 40 chr4 7116940 7117244 -195211103 + AluY SINE Alu 3 304 -7 210 255 0 0 chr4 7117309 7117356 -195210991 + MIR SINE MIR 123 169 -93 2297 105 0 0 chr4 7118228 7118533 -195209814 - AluSc SINE Alu -4 305 1 1732 158 3 58 chr4 7118593 7118923 -195209424 + AluJb SINE Alu 1 312 0 352 309 63 16 chr4 7119134 7119260 -195209087 + MIR SINE MIR 85 216 -46 2337 216 58 21 chr4 7119484 7120066 -195208281 + L1MC1 LINE L1 5729 6332 -1 1459 162 113 19 chr4 7120078 7120344 -195208003 + AluJb SINE Alu 1 291 -21 809 180 0 0 chr4 7121856 7121984 -195206363 - FLAM_A SINE Alu -7 135 8 346 220 150 116 chr4 7121987 7122160 -195206187 - MER5A DNA MER1_type -8 181 3 297 356 0 10 chr4 7122175 7122279 -195206068 - MER5A DNA MER1_type -3 186 84 1822 196 0 3 chr4 7122325 7122703 -195205644 - AluJo SINE Alu 0 377 1 1786 92 117 18 chr4 7122714 7122996 -195205351 - AluSp SINE Alu -3 310 1 651 200 145 33 chr4 7123032 7123410 -195204937 - MLT1D LTR MaLR -25 480 22 182 347 13 0 chr4 7123476 7123551 -195204796 + L2 LINE L2 3184 3259 -13 2155 118 0 6 chr4 7123566 7123879 -195204468 - AluSx SINE Alu -1 311 1 213 121 0 0 chr4 7124090 7124123 -195204224 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 337 372 66 27 chr4 7124393 7124651 -195203696 - L1MEc LINE L1 -3981 2415 2148 404 368 114 51 chr4 7125128 7125761 -195202586 - HAL1b LINE L1 -605 1322 71 337 231 231 11 chr4 7125990 7126081 -195202266 + L1ME4a LINE L1 5990 6100 -21 251 321 107 14 chr4 7126101 7126241 -195202106 + MIR SINE MIR 87 239 -23 33 0 0 0 chr4 7127015 7127048 -195201299 + GC_rich Low_complexity Low_complexity 1 33 0 27 110 0 0 chr4 7127670 7127788 -195200559 + GC_rich Low_complexity Low_complexity 1 118 0 338 309 57 0 chr4 7128243 7128366 -195199981 - MIR SINE MIR -73 189 60 204 301 131 43 chr4 7129310 7129685 -195198662 + L2 LINE L2 2827 3234 -38 225 310 69 21 chr4 7130052 7130197 -195198150 - L1ME4a LINE L1 -2 6119 5968 2460 70 0 3 chr4 7131467 7131779 -195196568 - AluY SINE Alu 0 311 1 377 191 95 0 chr4 7131825 7131909 -195196438 - MIR SINE MIR -69 193 102 303 265 51 43 chr4 7132319 7132436 -195195911 + MIR SINE MIR 37 154 -54 219 288 17 0 chr4 7132446 7132505 -195195842 + MIR SINE MIR 124 183 -79 326 271 28 19 chr4 7133382 7133489 -195194858 - MIR SINE MIR -116 146 39 255 196 0 54 chr4 7134028 7134084 -195194263 + C-rich Low_complexity Low_complexity 2 54 0 841 212 29 24 chr4 7134113 7134486 -195193861 - MLT1C LTR MaLR -1 466 51 223 242 71 50 chr4 7135977 7136076 -195192271 - MIR SINE MIR -77 131 31 448 328 73 25 chr4 7136721 7136925 -195191422 - MIR SINE MIR -13 249 36 912 267 137 37 chr4 7140781 7141212 -195187135 - MLT1K LTR MaLR 0 476 3 239 233 70 35 chr4 7141215 7141301 -195187046 - MLT1K LTR MaLR -484 104 16 2145 124 3 10 chr4 7141521 7141835 -195186512 + AluSq SINE Alu 1 312 -1 1825 184 36 33 chr4 7143624 7143988 -195184359 + MLT1A1 LTR MaLR 1 365 0 2198 116 0 0 chr4 7145367 7145668 -195182679 + AluSx SINE Alu 1 301 -11 254 239 0 0 chr4 7145780 7145826 -195182521 + MIR3 SINE MIR 112 157 -51 747 207 59 12 chr4 7145837 7146006 -195182341 - MER58A DNA MER1_type -13 211 35 328 282 105 0 chr4 7147236 7147360 -195180987 - L1ME4a LINE L1 0 6121 5985 2043 154 0 0 chr4 7147360 7147671 -195180676 - AluSx SINE Alu -1 311 1 301 200 62 0 chr4 7147959 7148024 -195180323 - L1ME4a LINE L1 -5 6116 6048 290 286 31 0 chr4 7148260 7148358 -195179989 + MIR SINE MIR 48 148 -60 224 274 8 48 chr4 7149720 7149844 -195178503 - L2 LINE L2 -229 3043 2925 341 295 9 9 chr4 7150151 7150256 -195178091 + MIR3 SINE MIR 58 162 -46 494 300 184 10 chr4 7150811 7151121 -195177226 + L2 LINE L2 1731 2094 -1220 190 330 142 34 chr4 7151299 7151532 -195176815 + L2 LINE L2 2273 2530 -784 1526 179 10 23 chr4 7154258 7154560 -195173787 - AluJb SINE Alu -14 298 1 237 263 17 0 chr4 7156848 7157023 -195171324 + (TG)n Simple_repeat Simple_repeat 2 179 0 249 222 35 0 chr4 7157049 7157220 -195171127 + (TG)n Simple_repeat Simple_repeat 2 178 0 313 217 24 6 chr4 7157249 7157415 -195170932 + (TG)n Simple_repeat Simple_repeat 2 170 0 214 274 57 57 chr4 7161840 7161964 -195166383 - MIR SINE MIR -80 182 59 306 305 80 53 chr4 7162085 7162236 -195166111 + MIR3 SINE MIR 23 177 -31 423 136 45 0 chr4 7162248 7162334 -195166013 - AluJb SINE Alu 0 301 213 329 333 119 6 chr4 7163062 7163230 -195165117 - L2 LINE L2 0 3313 3127 1203 205 91 18 chr4 7163367 7163708 -195164639 + MLT1D LTR MaLR 1 366 -139 206 337 58 0 chr4 7164614 7164700 -195163647 - MIR SINE MIR -78 184 94 512 271 80 24 chr4 7164714 7165131 -195163216 + MLT1F1 LTR MaLR 10 537 -30 3209 159 270 1 chr4 7165758 7166406 -195161941 - LTR12 LTR ERV1 0 826 5 1936 139 76 80 chr4 7166422 7167026 -195161321 - pTR5 LTR ERV1 -1094 1344 743 2015 208 21 68 chr4 7167236 7167809 -195160538 + MLT2B3 LTR ERVL 1 546 -8 567 278 96 5 chr4 7167978 7168165 -195160182 + MIR SINE MIR 47 250 -12 291 312 29 2 chr4 7168173 7168284 -195160063 + MIR SINE MIR 69 180 -62 240 209 0 0 chr4 7168327 7168413 -195159934 + (TTCA)n Simple_repeat Simple_repeat 2 87 0 4453 64 7 0 chr4 7168677 7169227 -195159120 + MER41A LTR ERV1 1 554 0 1253 286 77 31 chr4 7169276 7169610 -195158737 - HAL1 LINE L1 -75 2432 2115 1940 104 93 0 chr4 7169610 7169890 -195158457 - AluSx SINE Alu -6 306 1 1253 286 77 31 chr4 7169890 7170208 -195158139 - HAL1 LINE L1 -392 2115 1750 378 348 84 31 chr4 7170227 7170426 -195157921 - MLT1J LTR MaLR -16 495 271 3237 158 18 125 chr4 7170426 7171000 -195157347 + LTR8 LTR ERV1 1 472 -219 2123 115 0 0 chr4 7171000 7171286 -195157061 + AluSx SINE Alu 1 286 -26 3237 158 18 125 chr4 7171286 7171485 -195156862 + LTR8 LTR ERV1 472 691 0 378 348 84 31 chr4 7171485 7171607 -195156740 - MLT1J LTR MaLR -240 271 157 288 216 95 0 chr4 7171697 7171771 -195156576 - HAL1 LINE L1 -745 1762 1682 2674 197 23 49 chr4 7171969 7172210 -195156137 + MER41C LTR ERV1 1 247 -307 2104 100 3 29 chr4 7172210 7172521 -195155826 + AluSx SINE Alu 1 303 -9 2674 197 23 49 chr4 7172521 7172848 -195155499 + MER41C LTR ERV1 247 554 0 264 214 0 51 chr4 7172985 7173094 -195155253 + MLT1H LTR MaLR 447 549 0 902 271 135 67 chr4 7173094 7173482 -195154865 - HAL1 LINE L1 -851 1656 1296 2172 81 3 3 chr4 7173482 7173804 -195154543 - AluSx SINE Alu 0 322 1 902 271 135 67 chr4 7173804 7174269 -195154078 - HAL1 LINE L1 -1211 1296 729 1988 133 7 7 chr4 7174269 7174571 -195153776 - AluSx SINE Alu -10 302 1 902 271 135 67 chr4 7174571 7174665 -195153682 - HAL1 LINE L1 -1778 729 643 440 307 33 0 chr4 7174831 7175043 -195153304 - HAL1 LINE L1 -2178 329 111 183 328 66 0 chr4 7175171 7175232 -195153115 - L2 LINE L2 -42 3230 3166 631 329 18 18 chr4 7175434 7175656 -195152691 + MIR SINE MIR 5 226 -36 1394 228 23 49 chr4 7176357 7176787 -195151560 - MLT1D LTR MaLR -2 503 85 371 268 16 57 chr4 7176895 7177018 -195151329 + MIR SINE MIR 50 167 -95 267 254 30 0 chr4 7177563 7177630 -195150717 + MIR SINE MIR 69 137 -125 360 364 74 12 chr4 7177706 7177948 -195150399 - MIR SINE MIR -4 258 2 228 35 0 0 chr4 7178181 7178210 -195150137 + (CCA)n Simple_repeat Simple_repeat 1 29 0 195 69 0 0 chr4 7179080 7179109 -195149238 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 232 280 80 0 chr4 7179759 7179834 -195148513 + L2 LINE L2 3192 3272 0 247 290 0 14 chr4 7179964 7180033 -195148314 + L2 LINE L2 3203 3270 -2 1315 148 71 97 chr4 7181088 7181398 -195146949 + AluJo SINE Alu 3 304 -8 2249 91 3 0 chr4 7181582 7181893 -195146454 + AluSq SINE Alu 1 312 0 233 246 33 0 chr4 7182522 7182583 -195145764 + MIR SINE MIR 9 71 -191 734 100 0 0 chr4 7183342 7183442 -195144905 + AluSq SINE Alu 153 252 -61 321 293 0 9 chr4 7183485 7183591 -195144756 + MLT1K LTR MaLR 162 266 -322 539 229 67 14 chr4 7187191 7187364 -195140983 + MIR SINE MIR 9 190 -64 204 311 44 78 chr4 7187715 7187787 -195140560 - L2 LINE L2 -104 3209 3136 1574 184 116 32 chr4 7187787 7188167 -195140180 + MLT2D LTR ERVL 1 412 -2 204 311 44 78 chr4 7188167 7188274 -195140073 - L2 LINE L2 -177 3136 3036 328 307 143 32 chr4 7188673 7188862 -195139485 + MIR SINE MIR 22 231 -31 418 306 76 48 chr4 7188961 7189275 -195139072 + MLT1L LTR MaLR 216 538 -77 182 283 0 0 chr4 7189328 7189374 -195138973 + MIR SINE MIR 216 261 -1 339 242 11 11 chr4 7190256 7190347 -195138000 + L2 LINE L2 2969 3059 -213 262 313 43 26 chr4 7191344 7191459 -195136888 - MIR SINE MIR -97 165 49 203 244 110 0 chr4 7191565 7191647 -195136700 + MIR SINE MIR 39 113 -95 240 86 0 0 chr4 7192501 7192536 -195135811 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 476 320 178 8 chr4 7192548 7193034 -195135313 - L2 LINE L2 -27 3286 2708 216 167 0 0 chr4 7193161 7193197 -195135150 + G-rich Low_complexity Low_complexity 2 37 0 245 233 0 17 chr4 7194064 7194124 -195134223 + CT-rich Low_complexity Low_complexity 4 62 0 382 204 33 39 chr4 7194137 7194318 -195134029 + CT-rich Low_complexity Low_complexity 1 180 0 300 209 30 30 chr4 7194356 7194490 -195133857 + CT-rich Low_complexity Low_complexity 2 135 0 532 237 10 23 chr4 7194506 7194805 -195133542 + CT-rich Low_complexity Low_complexity 1 295 0 288 233 0 48 chr4 7195388 7195491 -195132856 + MER58B DNA MER1_type 244 341 0 314 259 80 56 chr4 7195529 7195691 -195132656 + MIR SINE MIR 11 176 -86 444 82 0 0 chr4 7196090 7196151 -195132196 + (TA)n Simple_repeat Simple_repeat 2 62 0 228 111 0 0 chr4 7197007 7197043 -195131304 + (CA)n Simple_repeat Simple_repeat 2 37 0 187 270 52 52 chr4 7197520 7197635 -195130712 + L2 LINE L2 1963 2077 -1237 260 203 16 16 chr4 7197849 7197913 -195130434 + MIR SINE MIR 82 145 -63 665 269 123 19 chr4 7199495 7199908 -195128439 + L2 LINE L2 2447 2902 -412 2144 112 10 0 chr4 7200053 7200348 -195127999 + AluSx SINE Alu 5 302 -10 344 224 82 31 chr4 7200413 7200511 -195127836 + MIR SINE MIR 20 122 -140 1487 221 126 9 chr4 7200512 7200956 -195127391 + MLT1D LTR MaLR 1 496 -9 471 216 234 0 chr4 7200975 7201071 -195127276 + Tigger2 DNA MER2_type 4 76 -2642 459 92 0 0 chr4 7201071 7201136 -195127211 + (CA)n Simple_repeat Simple_repeat 2 66 0 471 216 234 0 chr4 7201136 7201206 -195127141 + Tigger2 DNA MER2_type 76 209 -2509 597 258 0 26 chr4 7201210 7201365 -195126982 + Tigger2 DNA MER2_type 2558 2708 -10 239 233 163 54 chr4 7201368 7201497 -195126850 + MIR SINE MIR 120 262 0 248 288 68 8 chr4 7201793 7201911 -195126436 + MIR SINE MIR 40 164 -98 1441 142 150 11 chr4 7202451 7202711 -195125636 + AluSg SINE Alu 1 296 -14 259 337 83 0 chr4 7202752 7202957 -195125390 + L1M4 LINE L1 3545 3766 -2380 348 216 201 37 chr4 7203600 7203734 -195124613 - L1ME4a LINE L1 -4 6117 5962 407 368 35 26 chr4 7203751 7203979 -195124368 - L1ME4a LINE L1 -226 5895 5666 984 244 102 48 chr4 7204317 7204777 -195123570 + MLT1D LTR MaLR 1 485 -20 201 366 24 0 chr4 7204892 7204974 -195123373 + L2 LINE L2 2283 2366 -948 268 292 80 9 chr4 7205324 7205437 -195122910 + L2 LINE L2 2944 3064 -249 334 180 169 45 chr4 7205851 7205940 -195122407 - L2 LINE L2 -5 3267 3168 375 256 214 12 chr4 7206094 7206262 -195122085 + MIR SINE MIR 60 261 -1 230 325 25 0 chr4 7206471 7206551 -195121796 - L2 LINE L2 -174 3098 3017 353 246 112 39 chr4 7207702 7207881 -195120466 + MLT1K LTR MaLR 346 537 -51 254 301 58 39 chr4 7207922 7208025 -195120322 - MIR SINE MIR -138 124 20 703 283 82 9 chr4 7208247 7208466 -195119881 + MIR SINE MIR 28 262 0 913 50 8 25 chr4 7208571 7208690 -195119657 + AluY SINE Alu 24 140 -171 * 1168 147 66 0 chr4 7208689 7208886 -195119461 + AluSc SINE Alu 79 288 -21 295 313 52 0 chr4 7209712 7209808 -195118539 + MLT1I LTR MaLR 110 210 -199 1933 113 3 31 chr4 7210012 7210339 -195118008 + AluSx SINE Alu 1 319 0 213 302 0 0 chr4 7211260 7211313 -195117034 + MIR SINE MIR 95 147 -61 1117 210 170 51 chr4 7211727 7212175 -195116172 + MLT1D LTR MaLR 1 501 -4 419 355 110 23 chr4 7213449 7213805 -195114542 + HAL1 LINE L1 880 1276 -1231 213 349 46 34 chr4 7214576 7214751 -195113596 + L2 LINE L2 3094 3270 -2 205 313 12 24 chr4 7214911 7214994 -195113353 - MIR SINE MIR -97 111 30 421 332 155 18 chr4 7215132 7215409 -195112938 + L2 LINE L2 2999 3313 0 492 31 0 0 chr4 7215512 7215577 -195112770 - L1PA2 LINE L1 -162 5993 5929 1280 27 0 0 chr4 7215577 7215726 -195112621 + L1PA2 LINE L1 6007 6155 0 2225 107 3 10 chr4 7215903 7216213 -195112134 + AluSx SINE Alu 1 308 -4 288 298 132 3 chr4 7216485 7216659 -195111688 - MIR SINE MIR -54 208 18 * 695 313 48 4 chr4 7216658 7216885 -195111462 + MIR SINE MIR 14 250 -12 300 336 41 0 chr4 7216916 7217038 -195111309 + MIR3 SINE MIR 33 159 -49 254 284 86 9 chr4 7217077 7217193 -195111154 + MIR3 SINE MIR 7 131 -77 261 307 100 7 chr4 7217256 7217396 -195110951 + MIR3 SINE MIR 7 159 -49 515 248 20 39 chr4 7217556 7217709 -195110638 - MER58B DNA MER1_type 0 341 192 7266 46 5 1 chr4 7218132 7219693 -195108654 + L1PA6 LINE L1 4592 6148 -6 235 138 0 0 chr4 7219717 7219775 -195108572 + Charlie5 DNA MER1_type 2471 2528 -84 23 54 0 0 chr4 7219775 7219812 -195108535 + AT_rich Low_complexity Low_complexity 1 37 0 385 342 21 0 chr4 7220308 7220470 -195107877 - MIR SINE MIR -77 131 8 1699 195 18 34 chr4 7220948 7221328 -195107019 - MLT1B LTR MaLR -16 374 1 401 380 81 9 chr4 7221566 7221787 -195106560 + MIR SINE MIR 21 257 -5 266 327 30 0 chr4 7222812 7222913 -195105434 + MIR SINE MIR 87 190 -72 830 257 4 69 chr4 7222991 7223236 -195105111 + MIR SINE MIR 2 230 -32 463 228 41 81 chr4 7223393 7223491 -195104856 + MER63A DNA MER1_type 1 89 -1599 2375 80 0 3 chr4 7223491 7223803 -195104544 + AluY SINE Alu 1 311 0 463 228 41 81 chr4 7223803 7223901 -195104446 + MER63A DNA MER1_type 89 189 -21 661 284 155 9 chr4 7224192 7224734 -195103613 - L2 LINE L2 -19 3294 2642 557 330 15 15 chr4 7224767 7224964 -195103383 - MIR SINE MIR -31 231 35 198 328 160 8 chr4 7224971 7225102 -195103245 - L2 LINE L2 -668 2646 2496 236 303 45 0 chr4 7225155 7225221 -195103126 - MER91A DNA MER1_type 0 196 128 212 333 14 0 chr4 7225334 7225406 -195102941 + L2 LINE L2 3200 3272 0 251 184 0 0 chr4 7225426 7225475 -195102872 - MIR SINE MIR -129 79 31 197 382 20 20 chr4 7226274 7226376 -195101971 + L3 LINE CR1 1239 1340 -237 209 345 82 73 chr4 7226610 7226938 -195101409 - L2 LINE L2 -3 3269 2939 221 369 70 16 chr4 7226998 7227185 -195101162 - L2 LINE L2 -473 2841 2645 547 240 223 26 chr4 7228288 7228517 -195099830 + L2 LINE L2 935 1208 -2106 241 232 211 11 chr4 7228588 7228683 -195099664 + L2 LINE L2 3197 3310 -3 597 258 36 36 chr4 7229329 7229523 -195098824 - MER3 DNA MER1_type -15 194 1 387 309 24 73 chr4 7229532 7229778 -195098569 - MER113 DNA MER1_type? -279 242 9 302 331 37 7 chr4 7230010 7230146 -195098201 + L2 LINE L2 3132 3271 -1 381 292 62 31 chr4 7230343 7230504 -195097843 + MIR3 SINE MIR 11 176 -32 283 270 70 0 chr4 7230614 7230714 -195097633 + MLT1K LTR MaLR 74 180 -408 248 243 87 78 chr4 7231311 7231414 -195096933 - MIR SINE MIR -131 131 28 1031 195 35 35 chr4 7231766 7232027 -195096320 + MIR SINE MIR 2 262 0 282 300 0 0 chr4 7233092 7233162 -195095185 + MIR SINE MIR 73 142 -120 393 190 25 0 chr4 7233264 7233343 -195095004 + MLT1J LTR MaLR 103 183 -328 240 282 69 23 chr4 7233445 7233576 -195094771 + MLT1J2 LTR MaLR 313 449 -1 255 302 29 86 chr4 7233702 7233841 -195094506 + L2 LINE L2 3142 3272 0 324 240 0 0 chr4 7234024 7234124 -195094223 + (TG)n Simple_repeat Simple_repeat 1 100 0 219 389 45 54 chr4 7234612 7234833 -195093514 - L2 LINE L2 -97 3175 2957 303 353 17 8 chr4 7234894 7235013 -195093334 + L2 LINE L2 3133 3252 -20 295 278 0 75 chr4 7235600 7235733 -195092614 + MIR SINE MIR 28 150 -112 283 339 85 12 chr4 7235766 7235931 -195092416 - MIR SINE MIR -50 212 36 796 160 42 61 chr4 7236217 7236429 -195091918 + MLT2D LTR ERVL 207 414 0 190 365 12 12 chr4 7236481 7236566 -195091781 - MIR SINE MIR -134 128 44 1843 149 3 10 chr4 7236644 7236940 -195091407 - AluJb SINE Alu -10 302 9 2176 101 0 13 chr4 7237568 7237875 -195090472 + AluSx SINE Alu 1 303 -9 264 358 47 0 chr4 7239023 7239171 -195089176 - MIR SINE MIR -21 241 87 317 295 74 58 chr4 7239863 7240053 -195088294 + MIR SINE MIR 15 207 -55 246 211 21 21 chr4 7240143 7240238 -195088109 + C-rich Low_complexity Low_complexity 3 97 0 296 359 8 0 chr4 7242298 7242429 -195085918 + Charlie8 DNA MER1_type 84 215 -2202 545 218 316 15 chr4 7242705 7242817 -195085530 + L2 LINE L2 2347 2424 -890 486 0 0 0 chr4 7242817 7242871 -195085476 + (TC)n Simple_repeat Simple_repeat 1 54 0 369 0 0 0 chr4 7242870 7242911 -195085436 + (CA)n Simple_repeat Simple_repeat 1 41 0 * 545 218 316 15 chr4 7242871 7243133 -195085214 + L2 LINE L2 2424 2782 -532 420 380 121 13 chr4 7243589 7244037 -195084310 + L2 LINE L2 2815 3310 -3 257 250 50 75 chr4 7244551 7244680 -195083667 + L1ME4a LINE L1 5965 6091 -30 509 189 0 0 chr4 7244680 7244770 -195083577 - L1MA10 LINE L1 -2 6332 6243 257 250 50 75 chr4 7244770 7244800 -195083547 + L1ME4a LINE L1 6091 6120 -1 299 307 23 0 chr4 7244927 7245015 -195083332 - MIR SINE MIR -56 206 117 387 307 92 7 chr4 7245044 7245197 -195083150 + MIR SINE MIR 31 196 -66 205 179 0 128 chr4 7245667 7245745 -195082602 + L2 LINE L2 3016 3083 -189 2163 122 10 0 chr4 7245757 7246061 -195082286 - AluSx SINE Alu -5 307 1 231 235 0 0 chr4 7246187 7246238 -195082109 - MIR SINE MIR -1 261 211 2413 252 45 57 chr4 7246240 7247723 -195080624 + L1ME LINE L1 10 1472 -4608 1988 109 29 29 chr4 7247723 7248035 -195080312 + AluSq SINE Alu 1 312 -1 2413 252 45 57 chr4 7248035 7248051 -195080296 + L1ME LINE L1 1472 1487 -4593 181 265 286 0 chr4 7248070 7248168 -195080179 - MIR SINE MIR -74 188 63 891 235 28 12 chr4 7248553 7248800 -195079547 + MLT1C LTR MaLR 1 251 -216 356 105 0 0 chr4 7248814 7248871 -195079476 + Alu SINE Alu 1 57 -245 1011 214 5 9 chr4 7248877 7249101 -195079246 + MLT1C LTR MaLR 245 467 0 346 286 20 82 chr4 7249258 7249405 -195078942 + MIR SINE MIR 54 191 -71 765 284 47 17 chr4 7249870 7250106 -195078241 - MIR SINE MIR -11 251 9 247 270 37 10 chr4 7251437 7251538 -195076809 + MIR3 SINE MIR 57 162 -46 306 214 107 24 chr4 7252040 7252124 -195076223 + MIR SINE MIR 45 135 -73 1157 156 6 0 chr4 7252249 7252429 -195075918 + L1MB4 LINE L1 6000 6180 0 1018 282 133 16 chr4 7252429 7252939 -195075408 - L2 LINE L2 -5 3308 2747 1449 191 2 97 chr4 7253233 7253658 -195074689 - L1MB5 LINE L1 0 6174 5790 318 337 101 18 chr4 7254225 7254394 -195073953 + MER5A DNA MER1_type 7 189 0 325 248 155 19 chr4 7254427 7254588 -195073759 + MIR SINE MIR 80 262 0 226 304 0 0 chr4 7254743 7254799 -195073548 + MIR SINE MIR 111 166 -96 413 313 101 0 chr4 7255175 7255392 -195072955 + L2 LINE L2 2539 2777 -537 373 366 52 0 chr4 7255485 7255657 -195072690 - L2 LINE L2 0 3272 3092 194 250 62 0 chr4 7256540 7256604 -195071743 - MIR SINE MIR -81 181 114 283 348 18 9 chr4 7256807 7256919 -195071428 - MIR SINE MIR -42 220 108 354 245 23 23 chr4 7256976 7257139 -195071208 + MER63 DNA MER1_type 39 1679 -9 377 241 0 0 chr4 7257165 7257244 -195071103 + MER63 DNA MER1_type 977 1055 -5 522 251 95 6 chr4 7257824 7258003 -195070344 + MIR SINE MIR 9 203 -59 2487 266 57 23 chr4 7258015 7259443 -195068904 + L1ME1 LINE L1 4665 6140 -26 271 262 0 0 chr4 7260285 7260346 -195068001 + Charlie1 DNA MER1_type 1 61 -2700 1688 148 64 27 chr4 7260353 7260757 -195067590 + Charlie1 DNA MER1_type 2343 2761 0 630 283 5 56 chr4 7262095 7262293 -195066054 + MIR SINE MIR 6 193 -69 268 178 27 14 chr4 7262652 7262725 -195065622 + CT-rich Low_complexity Low_complexity 1 74 0 284 337 91 30 chr4 7262752 7262978 -195065369 - L2 LINE L2 -37 3235 2994 1980 100 0 0 chr4 7263814 7264085 -195064262 + AluSx SINE Alu 40 310 -2 288 246 36 17 chr4 7264136 7264238 -195064109 + MIR3 SINE MIR 14 117 -114 182 245 147 39 chr4 7264784 7264886 -195063461 - MER5A DNA MER1_type -30 159 47 540 327 25 15 chr4 7265064 7265266 -195063081 + MIR SINE MIR 36 239 -23 378 294 94 31 chr4 7265298 7265458 -195062889 - MIR SINE MIR -32 230 61 211 343 0 0 chr4 7266253 7266326 -195062021 - MIR SINE MIR -10 252 180 1641 125 3 96 chr4 7266643 7266987 -195061360 + AluSx SINE Alu 1 312 0 970 233 146 46 chr4 7266997 7267399 -195060948 + MLT1D LTR MaLR 31 451 -16 2097 98 7 19 chr4 7267587 7267894 -195060453 - AluSx SINE Alu -9 303 1 1375 205 91 3 chr4 7268029 7268326 -195060021 + MER33 DNA MER1_type 1 323 -1 249 337 123 6 chr4 7268784 7268947 -195059400 - MER5A DNA MER1_type -1 188 7 218 350 26 17 chr4 7269876 7269993 -195058354 - MIR SINE MIR -58 150 33 266 293 116 0 chr4 7270003 7270150 -195058197 + L2 LINE L2 2894 3057 -215 638 250 0 73 chr4 7270962 7271036 -195057311 - MIR SINE MIR -50 212 134 1858 130 0 11 chr4 7271036 7271366 -195056981 - AluJb SINE Alu 0 327 1 638 250 0 73 chr4 7271366 7271482 -195056865 - MIR SINE MIR -128 134 35 2488 65 0 0 chr4 7271739 7272046 -195056301 - AluY SINE Alu -4 307 1 213 159 0 0 chr4 7272145 7272189 -195056158 + MIR SINE MIR 178 221 -41 247 354 27 4 chr4 7272470 7272627 -195055720 - MIR SINE MIR -16 246 84 213 288 45 0 chr4 7272698 7272764 -195055583 - MIR SINE MIR -95 113 45 2119 151 11 3 chr4 7272896 7273247 -195055100 + MLT1A1 LTR MaLR 12 365 0 376 351 0 6 chr4 7273360 7273534 -195054813 + (CA)n Simple_repeat Simple_repeat 1 173 0 227 293 40 10 chr4 7273950 7274049 -195054298 - MIR SINE MIR -127 135 34 402 21 0 0 chr4 7274265 7274312 -195054035 + (TG)n Simple_repeat Simple_repeat 2 48 0 212 329 12 12 chr4 7274750 7274835 -195053512 - MIR SINE MIR -70 192 108 294 311 21 10 chr4 7274891 7275032 -195053315 + MIR SINE MIR 11 152 -69 652 298 93 0 chr4 7275904 7276162 -195052185 - L3 LINE CR1 -25 1552 1271 196 370 16 8 chr4 7276232 7276359 -195051988 + L2 LINE L2 2305 2432 -882 415 227 134 0 chr4 7276445 7276564 -195051783 - MIR SINE MIR -113 149 15 377 238 25 17 chr4 7278183 7278311 -195050036 + MIR SINE MIR 35 162 -58 372 293 67 30 chr4 7278474 7278638 -195049709 - MIR SINE MIR -78 184 15 237 247 22 56 chr4 7278989 7279078 -195049269 - L2 LINE L2 -2 3270 3185 249 226 60 12 chr4 7279237 7279321 -195049026 + MER58C DNA MER1_type 58 145 -70 1889 108 0 34 chr4 7279335 7279630 -195048717 + AluSx SINE Alu 28 312 0 352 198 49 0 chr4 7279631 7279712 -195048635 + MER58C DNA MER1_type 115 199 -16 1462 217 119 14 chr4 7279802 7280171 -195048176 - MLT1C LTR MaLR -1 466 59 261 292 7 73 chr4 7282462 7282599 -195045748 + MIR SINE MIR 24 151 -111 2642 111 16 5 chr4 7282640 7283026 -195045321 - MLT1B LTR MaLR 0 390 1 407 268 91 103 chr4 7283286 7283364 -195044983 - L2 LINE L2 -1 3312 3235 2194 112 6 6 chr4 7283364 7283676 -195044671 - AluSx SINE Alu 0 312 1 407 268 91 103 chr4 7283676 7283993 -195044354 - L2 LINE L2 -78 3235 2922 285 51 0 0 chr4 7284073 7284112 -195044235 + (TTAGGG)n Simple_repeat Simple_repeat 5 43 0 573 318 26 0 chr4 7285031 7285226 -195043121 + MIR SINE MIR 29 228 -34 490 150 42 0 chr4 7285986 7286106 -195042241 + (TG)n Simple_repeat Simple_repeat 2 126 0 350 211 56 0 chr4 7287354 7287425 -195040922 + L2 LINE L2 3197 3271 -1 257 258 61 0 chr4 7288093 7288159 -195040188 - MIR SINE MIR -70 192 123 342 265 62 37 chr4 7288931 7289093 -195039254 - MIR SINE MIR -86 176 11 1205 229 5 0 chr4 7289131 7289354 -195038993 - MER58A DNA MER1_type 0 224 1 206 246 49 0 chr4 7290098 7290159 -195038188 - MIR SINE MIR -87 121 58 308 221 213 52 chr4 7290401 7290537 -195037810 - MIR SINE MIR -91 171 14 2252 103 0 0 chr4 7290798 7291109 -195037238 + AluSx SINE Alu 1 311 -1 403 323 43 12 chr4 7291357 7291518 -195036829 + MER63A DNA MER1_type 42 207 -3 1503 186 130 6 chr4 7291962 7292284 -195036063 - MLT1A1 LTR MaLR -3 362 1 204 311 78 0 chr4 7292366 7292469 -195035878 + L2 LINE L2 2623 2733 -581 773 237 121 16 chr4 7292700 7292957 -195035390 - MER46C DNA MER2_type -29 309 26 2354 127 48 17 chr4 7292959 7293375 -195034972 + Tigger2a DNA MER2_type 1 429 -5 190 308 158 14 chr4 7293617 7293763 -195034584 + L2 LINE L2 2989 3155 -117 795 278 75 4 chr4 7293820 7294061 -195034286 - MIR SINE MIR -1 261 4 446 302 85 0 chr4 7294274 7294486 -195033861 - L1MC4a LINE L1 -1905 5903 5674 2203 125 0 0 chr4 7294504 7294816 -195033531 - AluSx SINE Alu 0 312 1 538 253 70 54 chr4 7294863 7295104 -195033243 - L1MC4a LINE L1 -2272 5536 5292 594 325 96 49 chr4 7295125 7295661 -195032686 - L1MEc LINE L1 -1033 1261 13 2198 173 8 6 chr4 7296053 7296417 -195031930 + MLT1A1 LTR MaLR 1 365 0 1030 206 55 32 chr4 7296812 7297030 -195031317 - MER58A DNA MER1_type 0 224 2 242 347 107 0 chr4 7297082 7297203 -195031144 + Charlie8 DNA MER1_type 37 170 -2247 329 314 51 22 chr4 7297525 7297662 -195030685 - MIR3 SINE MIR -4 204 64 910 306 43 10 chr4 7300951 7301343 -195027004 - LTR16C LTR ERVL -5 486 82 935 245 17 12 chr4 7302759 7303000 -195025347 - MIR SINE MIR -7 255 14 196 300 33 0 chr4 7303090 7303150 -195025197 - MIR SINE MIR -55 153 92 405 338 25 6 chr4 7303724 7303884 -195024463 + MIR SINE MIR 20 182 -80 267 349 28 9 chr4 7304490 7304599 -195023748 - MIR SINE MIR -35 227 117 2014 137 0 13 chr4 7305062 7305376 -195022971 + AluJb SINE Alu 3 312 0 828 188 7 7 chr4 7305727 7305897 -195022450 + FRAM SINE Alu 1 167 0 427 269 9 99 chr4 7306135 7306347 -195022000 + MIR SINE MIR 25 217 -45 310 339 48 0 chr4 7306604 7306728 -195021619 + MIR SINE MIR 89 218 -44 202 289 66 0 chr4 7306914 7306990 -195021357 - MIR SINE MIR -77 185 105 189 0 0 0 chr4 7307675 7307696 -195020651 + (CCCCCA)n Simple_repeat Simple_repeat 3 23 0 248 322 11 0 chr4 7307876 7307963 -195020384 + MIR SINE MIR 43 130 -132 343 306 30 0 chr4 7308303 7308437 -195019910 - MIR SINE MIR -12 250 113 492 137 0 14 chr4 7308437 7308510 -195019837 + AluS SINE Alu 2 73 -240 21 0 0 0 chr4 7309588 7309609 -195018738 + AT_rich Low_complexity Low_complexity 1 21 0 394 331 7 22 chr4 7310246 7310385 -195017962 + MIR SINE MIR 9 145 -117 198 318 91 0 chr4 7311101 7311189 -195017158 + L2 LINE L2 3214 3309 -4 * 343 305 49 58 chr4 7311185 7311408 -195016939 + L2 LINE L2 3022 3242 -30 243 125 0 0 chr4 7312670 7312710 -195015637 - MIR SINE MIR -62 146 107 796 274 69 17 chr4 7314354 7314881 -195013466 + MLT1H1 LTR MaLR 1 543 -12 216 281 0 0 chr4 7314891 7314955 -195013392 + MIR SINE MIR 77 140 -68 338 277 29 51 chr4 7316252 7316389 -195011958 + L1ME4a LINE L1 5762 5895 -226 249 321 54 9 chr4 7316404 7316516 -195011831 + L1ME4a LINE L1 5975 6091 -30 3553 194 42 45 chr4 7317032 7317081 -195011266 - Tigger6a DNA MER2_type -514 1083 1035 2169 133 3 3 chr4 7317081 7317382 -195010965 + AluSx SINE Alu 1 301 -11 3553 194 42 45 chr4 7317382 7317529 -195010818 - Tigger6a DNA MER2_type -562 1035 889 2236 117 0 7 chr4 7317529 7317828 -195010519 - AluJo SINE Alu -15 297 1 3553 194 42 45 chr4 7317828 7318400 -195009947 - Tigger6a DNA MER2_type -708 889 315 2091 146 16 11 chr4 7318400 7318763 -195009584 - MLT1A1 LTR MaLR 0 365 1 3553 194 42 45 chr4 7318763 7318854 -195009493 - Tigger6a DNA MER2_type -1282 315 225 1315 229 196 5 chr4 7319198 7319570 -195008777 - MLT1G1 LTR MaLR -2 593 151 867 176 0 0 chr4 7319817 7319959 -195008388 + AluSg/x SINE Alu 156 297 -15 453 296 145 65 chr4 7320061 7320289 -195008058 + L1ME4a LINE L1 5564 5772 -349 1862 189 40 11 chr4 7320289 7320664 -195007683 + MLT1B LTR MaLR 1 386 -4 453 296 145 65 chr4 7320664 7320945 -195007402 + L1ME4a LINE L1 5772 6114 -7 498 217 99 41 chr4 7321483 7321728 -195006619 + MLT1I LTR MaLR 1 205 -204 265 327 13 27 chr4 7322088 7322238 -195006109 - MIR SINE MIR -51 211 64 1911 108 0 15 chr4 7322403 7322663 -195005684 + AluSx SINE Alu 55 310 -2 395 315 138 26 chr4 7322665 7323056 -195005291 + L1MC5 LINE L1 7454 7888 -73 476 259 146 23 chr4 7324153 7324373 -195003974 + MIR SINE MIR 7 253 -9 459 289 115 24 chr4 7375040 7375293 -194953054 - LTR16C LTR ERVL -108 383 108 2341 98 0 3 chr4 7375293 7375600 -194952747 - AluSx SINE Alu -5 307 2 360 257 110 7 chr4 7375605 7375741 -194952606 + MER31-int LTR ERV1 3155 3304 -1632 261 263 113 45 chr4 7376100 7376233 -194952114 + MIR SINE MIR 51 192 -70 1967 198 55 34 chr4 7376386 7376600 -194951747 - MER66B LTR ERV1 -2 484 276 1912 58 91 0 chr4 7376600 7376841 -194951506 - AluSg SINE Alu -47 263 1 1967 198 55 34 chr4 7376841 7377100 -194951247 - MER66B LTR ERV1 -210 276 1 245 29 29 0 chr4 7377667 7377701 -194950646 + (CA)n Simple_repeat Simple_repeat 2 36 0 381 280 11 0 chr4 7377702 7377795 -194950552 + L2 LINE L2 3206 3299 -14 233 225 56 45 chr4 7379088 7379177 -194949170 + MLT1K LTR MaLR 337 426 -162 356 339 24 2 chr4 7379361 7379499 -194948848 + MIR SINE MIR 11 143 -65 428 220 10 0 chr4 7379682 7379782 -194948565 + L1MB3 LINE L1 5639 5739 -432 2315 85 10 0 chr4 7379782 7380077 -194948270 + AluSg SINE Alu 1 298 -12 1483 174 21 76 chr4 7380079 7380282 -194948065 + L1MB3 LINE L1 5823 5997 -186 2250 86 0 0 chr4 7380282 7380572 -194947775 - AluSx SINE Alu -22 290 1 1483 174 21 76 chr4 7380572 7380748 -194947599 + L1MB3 LINE L1 5997 6181 -2 26 64 0 0 chr4 7383223 7383270 -194945077 + GC_rich Low_complexity Low_complexity 1 47 0 234 0 0 0 chr4 7385889 7385915 -194942432 + (CA)n Simple_repeat Simple_repeat 2 27 0 310 313 12 0 chr4 7388347 7388430 -194939917 - L1M4c LINE L1 -1352 5605 5522 8555 247 48 30 chr4 7388432 7388834 -194939513 - L1M4c LINE L1 -1478 5479 5085 2630 62 0 3 chr4 7388834 7389141 -194939206 - AluY SINE Alu -5 306 1 8555 247 48 30 chr4 7389141 7391673 -194936674 - L1M4c LINE L1 -1872 5085 2350 2350 117 3 0 chr4 7391673 7391980 -194936367 - AluSx SINE Alu -4 308 1 8555 247 48 30 chr4 7391980 7393135 -194935212 - L1M4c LINE L1 -4607 2350 1217 21 0 0 0 chr4 7393140 7393161 -194935186 + AT_rich Low_complexity Low_complexity 1 21 0 2235 96 4 0 chr4 7393163 7393444 -194934903 + AluSx SINE Alu 1 282 -30 364 280 38 0 chr4 7393457 7393573 -194934774 - L1M4c LINE L1 -1339 7514 2527 329 348 0 0 chr4 7393493 7393582 -194934765 + L1MC4 LINE L1 6614 6702 -1340 * 321 230 81 0 chr4 7393715 7393789 -194934558 - L1M4c LINE L1 -4355 2602 2523 * 326 274 0 53 chr4 7393776 7393871 -194934476 - L1MC4 LINE L1 -1339 6703 6614 262 333 130 10 chr4 7393871 7394063 -194934284 - L1M4c LINE L1 -5612 1243 1029 373 271 50 71 chr4 7394332 7394572 -194933775 - L1M4c LINE L1 -6614 245 11 364 273 36 43 chr4 7394681 7394820 -194933527 - MIR3 SINE MIR -62 146 9 1291 107 0 0 chr4 7394923 7395082 -194933265 - AluSx SINE Alu -153 159 1 2240 107 13 0 chr4 7395090 7395388 -194932959 - AluSq SINE Alu -11 302 1 613 261 75 0 chr4 7395403 7395683 -194932664 + L1M4 LINE L1 3030 3330 -2816 192 305 146 12 chr4 7395908 7395990 -194932357 + L2 LINE L2 3180 3272 0 530 231 31 0 chr4 7396163 7396293 -194932054 + MLT1C-int LTR MaLR 1238 1371 0 744 199 65 15 chr4 7396293 7396494 -194931853 + MLT1C LTR MaLR 1 211 -256 2523 173 29 13 chr4 7396522 7396978 -194931369 - MLT1C LTR MaLR 0 467 5 2941 194 9 5 chr4 7397268 7397824 -194930523 - L1MB3 LINE L1 0 6183 5626 231 217 0 0 chr4 7398341 7398401 -194929946 + (CA)n Simple_repeat Simple_repeat 1 60 0 2417 89 3 19 chr4 7399082 7399396 -194928951 - AluSq SINE Alu -4 309 1 309 159 0 43 chr4 7400165 7400234 -194928113 - MLT1F1 LTR MaLR 0 567 502 417 305 96 6 chr4 7400234 7400583 -194927764 - L1MB3 LINE L1 -655 5507 5126 439 119 0 0 chr4 7400621 7400680 -194927667 + AluS SINE Alu 2 60 -250 1403 139 5 14 chr4 7400723 7400938 -194927409 + AluSg/x SINE Alu 68 280 -32 948 74 7 20 chr4 7400940 7401089 -194927258 + (GAAA)n Simple_repeat Simple_repeat 2 148 0 455 309 14 34 chr4 7401089 7401296 -194927051 - L1MB3 LINE L1 -1059 5087 4885 394 317 70 20 chr4 7401386 7401585 -194926762 + L1MC4a LINE L1 5681 5889 -1919 2372 101 3 0 chr4 7401587 7401895 -194926452 + AluSq SINE Alu 1 309 -4 2146 98 7 18 chr4 7401897 7402231 -194926116 + AluSq SINE Alu 1 331 0 366 255 35 41 chr4 7402616 7402761 -194925586 - L1ME4a LINE L1 -12 6109 5966 4048 80 51 0 chr4 7402908 7403435 -194924912 + MER41A LTR ERV1 1 554 0 4301 212 97 65 chr4 7403520 7405374 -194922973 + MER41A-int LTR ERV1 1 2017 -3929 330 59 59 0 chr4 7405370 7405421 -194922926 + MER41A-int LTR ERV1 2167 2220 -3726 * 3134 123 62 46 chr4 7405417 7405824 -194922523 + MER41A-int LTR ERV1 3355 3754 -4062 2280 112 0 3 chr4 7405824 7406119 -194922228 + AluSg SINE Alu 1 294 -16 3134 123 62 46 chr4 7406119 7406222 -194922125 + MER41A-int LTR ERV1 3754 3854 -3962 2192 126 7 0 chr4 7406222 7406523 -194921824 + AluSq SINE Alu 1 303 -10 3134 123 62 46 chr4 7406523 7406551 -194921796 + MER41A-int LTR ERV1 3854 3880 -3936 2190 122 0 7 chr4 7406551 7406847 -194921500 + AluSx SINE Alu 1 294 -18 3134 123 62 46 chr4 7406847 7407228 -194921119 + MER41A-int LTR ERV1 3880 4417 -3399 11498 85 32 26 chr4 7407262 7407886 -194920461 + MER41A-int LTR ERV1 4191 4810 -1136 1975 167 0 0 chr4 7407886 7408180 -194920167 + AluSx SINE Alu 1 294 -18 11498 85 32 26 chr4 7408180 7409299 -194919048 + MER41A-int LTR ERV1 4810 5944 -2 4013 85 43 0 chr4 7409299 7409830 -194918517 + MER41A LTR ERV1 1 554 0 922 120 6 78 chr4 7410266 7410433 -194917914 + FRAM SINE Alu 1 40 0 789 223 54 0 chr4 7410458 7410642 -194917705 + MER58A DNA MER1_type 3 196 -28 260 281 152 22 chr4 7410856 7411126 -194917221 + LTR16A LTR ERVL 146 450 0 592 301 15 41 chr4 7411149 7411415 -194916932 - L2 LINE L2 -528 2786 2528 2212 95 3 0 chr4 7411506 7411856 -194916491 + AluSx SINE Alu 1 351 0 1164 216 137 51 chr4 7412066 7412556 -194915791 - LTR55 LTR ERV -16 532 1 330 310 75 12 chr4 7412565 7412900 -194915447 + L1 LINE L1 4295 4650 -1496 265 169 31 31 chr4 7412979 7413044 -194915303 + L1ME LINE L1 5714 5778 -343 857 172 0 0 chr4 7413071 7413205 -194915142 + AluJo SINE Alu 3 136 -176 6183 115 11 8 chr4 7413212 7414312 -194914035 + L1P4 LINE L1 4352 5457 -711 306 111 0 0 chr4 7414413 7414458 -194913889 - Alu SINE Alu -254 45 1 2120 74 0 40 chr4 7414486 7414782 -194913565 + AluSx SINE Alu 1 284 -28 1383 68 0 62 chr4 7414782 7414818 -194913529 + AluSq SINE Alu 1 320 0 192 305 12 24 chr4 7415555 7415637 -194912710 - MIR SINE MIR -118 144 64 1090 272 100 37 chr4 7415819 7416301 -194912046 + MLT1E3 LTR MaLR 1 512 -112 238 219 0 47 chr4 7416302 7416366 -194911981 - MIR SINE MIR -66 196 136 36 73 0 10 chr4 7417026 7417052 -194911295 + GC_rich Low_complexity Low_complexity 1 26 -69 198 71 0 0 chr4 7417052 7417080 -194911267 + (CAG)n Simple_repeat Simple_repeat 1 28 0 36 73 0 10 chr4 7417080 7417149 -194911198 + GC_rich Low_complexity Low_complexity 26 95 0 217 267 0 67 chr4 7417187 7417322 -194911025 + G-rich Low_complexity Low_complexity 1 126 0 23 92 0 0 chr4 7417327 7417392 -194910955 + GC_rich Low_complexity Low_complexity 1 65 0 267 278 121 52 chr4 7418701 7418874 -194909473 + MIR3 SINE MIR 4 188 -20 1148 196 64 38 chr4 7418930 7419196 -194909151 + AluJb SINE Alu 1 273 -39 486 193 12 30 chr4 7419196 7419362 -194908985 + GA-rich Low_complexity Low_complexity 2 164 0 419 250 9 15 chr4 7419375 7419702 -194908645 + GA-rich Low_complexity Low_complexity 1 325 0 848 238 188 18 chr4 7420529 7420928 -194907419 - MLT1J LTR MaLR -32 479 13 314 262 58 29 chr4 7421081 7421184 -194907163 - MIR SINE MIR -110 152 47 952 243 56 31 chr4 7421242 7421652 -194906695 - MLT1D LTR MaLR -12 493 35 1768 114 144 0 chr4 7422160 7422424 -194905923 - AluSx SINE Alu 0 302 1 221 335 47 0 chr4 7423162 7423332 -194905015 + (CCCTG)n Simple_repeat Simple_repeat 1 178 0 205 196 0 22 chr4 7423618 7423664 -194904683 + (TGG)n Simple_repeat Simple_repeat 1 45 0 1994 139 0 3 chr4 7425413 7425707 -194902640 - AluJb SINE Alu -9 303 11 283 200 27 27 chr4 7425708 7425783 -194902564 + MIR SINE MIR 101 175 -87 1800 245 54 4 chr4 7425786 7426305 -194902042 + L1MB8 LINE L1 5625 6169 -9 2623 42 0 0 chr4 7426308 7426617 -194901730 - AluY SINE Alu -2 309 1 263 315 22 0 chr4 7426664 7426756 -194901591 - L2 LINE L2 -1 3312 3219 342 339 24 42 chr4 7426826 7426994 -194901353 - MIR SINE MIR -91 171 7 1167 213 84 3 chr4 7427260 7427556 -194900791 + MLT1C LTR MaLR 140 459 -8 2111 92 0 7 chr4 7427978 7428297 -194900050 + AluSx SINE Alu 1 317 0 1559 213 33 0 chr4 7428303 7428603 -194899744 + AluJb SINE Alu 3 312 0 311 253 208 7 chr4 7428692 7428846 -194899501 + MER117 DNA MER1_type 3 187 -10 1693 189 10 93 chr4 7429686 7430094 -194898253 + MLT1A2 LTR MaLR 1 374 0 2405 57 0 13 chr4 7430200 7430499 -194897848 - AluY SINE Alu -16 295 1 391 287 20 108 chr4 7430663 7430914 -194897433 + L2 LINE L2 2953 3181 -91 441 323 72 7 chr4 7431228 7431451 -194896896 - MIR SINE MIR 0 262 20 193 410 119 11 chr4 7431666 7431927 -194896420 - L2 LINE L2 -345 2969 2681 191 322 34 0 chr4 7432377 7432436 -194895911 - L2 LINE L2 -5 3267 3207 426 289 72 4 chr4 7432491 7432726 -194895621 - LTR33 LTR ERVL -36 485 235 631 246 7 0 chr4 7432736 7432878 -194895469 + MLT1C LTR MaLR 321 463 -4 1965 185 45 9 chr4 7433496 7433940 -194894407 - MLT1C LTR MaLR -7 460 1 267 241 207 31 chr4 7435127 7435250 -194893097 - MIR SINE MIR -45 163 24 1106 162 33 50 chr4 7435463 7435704 -194892643 - L1MA6 LINE L1 -2 6298 6062 313 130 4 2 chr4 7435704 7435953 -194892394 + AluJo SINE Alu 1 302 0 373 194 153 0 chr4 7435956 7436054 -194892293 - L1MA6 LINE L1 -225 6075 5963 2135 96 7 0 chr4 7436065 7436377 -194891970 - AluSg SINE Alu 0 314 1 1788 158 5 25 chr4 7436381 7436749 -194891598 - L1MA6 LINE L1 -871 5275 4915 1852 152 0 26 chr4 7437552 7437855 -194890492 + AluSx SINE Alu 1 295 -17 1365 208 31 0 chr4 7437860 7438177 -194890170 + MLT1C LTR MaLR 1 327 -140 * 1421 236 43 10 chr4 7438163 7438561 -194889786 + MER67A LTR ERV1 5 415 -128 696 117 175 73 chr4 7438563 7438700 -194889647 + AluJo SINE Alu 1 151 -161 552 103 0 0 chr4 7438723 7438801 -194889546 - AluJb SINE Alu -81 231 154 304 264 73 139 chr4 7438850 7439290 -194889057 + L2 LINE L2 2844 3254 -18 258 106 0 0 chr4 7439292 7439339 -194889008 + (TGAA)n Simple_repeat Simple_repeat 2 48 0 364 355 49 16 chr4 7439786 7439969 -194888378 - L1ME4a LINE L1 -8 6113 5925 715 156 117 0 chr4 7440123 7440251 -194888096 + FLAM_C SINE Alu 1 143 0 575 115 52 125 chr4 7440375 7440567 -194887780 - MER53 DNA DNA -11 178 1 186 229 0 71 chr4 7440738 7440808 -194887539 - L2 LINE L2 -1 3312 3248 220 318 56 19 chr4 7440886 7440993 -194887354 + L2 LINE L2 3160 3270 -2 509 121 61 0 chr4 7442141 7442306 -194886041 + (TG)n Simple_repeat Simple_repeat 1 175 0 252 161 69 11 chr4 7442319 7442406 -194885941 + (TG)n Simple_repeat Simple_repeat 2 93 0 1673 170 4 0 chr4 7442857 7443128 -194885219 - AluSq SINE Alu -18 295 24 269 306 119 38 chr4 7443268 7443428 -194884919 + L2 LINE L2 2923 3095 -177 182 234 0 21 chr4 7444360 7444407 -194883940 - MIR SINE MIR -126 82 37 365 244 76 34 chr4 7445590 7445709 -194882638 + MIR SINE MIR 40 163 -99 304 315 100 15 chr4 7446371 7446501 -194881846 + MIR SINE MIR 52 192 -70 345 263 72 105 chr4 7446791 7446871 -194881476 + L2 LINE L2 3105 3186 -127 877 207 18 62 chr4 7446871 7447098 -194881249 - MER20 DNA MER1_type -2 217 1 345 263 72 105 chr4 7447098 7447226 -194881121 + L2 LINE L2 3186 3306 -7 222 142 62 7 chr4 7447266 7447330 -194881017 - MIR SINE MIR -62 146 108 182 290 16 32 chr4 7448502 7448564 -194879783 + L2 LINE L2 2718 2778 -536 * 558 217 45 18 chr4 7448546 7448691 -194879656 + MIR SINE MIR 33 170 -54 330 237 21 54 chr4 7449565 7449658 -194878689 + L2 LINE L2 3156 3245 -27 297 311 85 28 chr4 7450421 7450598 -194877749 - MIR SINE MIR -63 199 13 637 241 11 43 chr4 7450735 7450922 -194877425 - MIR SINE MIR -51 211 31 611 217 22 0 chr4 7451994 7452132 -194876215 + L1ME1 LINE L1 6025 6165 -1 1846 147 39 23 chr4 7452169 7452340 -194876007 - AluSx SINE Alu 0 312 132 207 0 0 0 chr4 7452340 7452363 -194875984 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1846 147 39 23 chr4 7452363 7452498 -194875849 - AluSx SINE Alu -180 132 1 631 373 71 0 chr4 7452498 7452755 -194875592 - L1M4 LINE L1 -2630 3516 3238 2159 126 7 0 chr4 7453401 7453711 -194874636 + AluSx SINE Alu 1 312 0 220 291 29 68 chr4 7453959 7454062 -194874285 - MIR3 SINE MIR -52 156 58 * 287 243 27 63 chr4 7454029 7454140 -194874207 + L2 LINE L2 3152 3258 -14 258 132 0 73 chr4 7454294 7454362 -194873985 + (CCCCG)n Simple_repeat Simple_repeat 1 63 0 295 253 87 105 chr4 7455398 7455675 -194872672 + L2 LINE L2 2813 3084 -188 2198 109 0 0 chr4 7455882 7456175 -194872172 - AluSx SINE Alu -19 293 1 1981 85 48 4 chr4 7456753 7457049 -194871298 - AluSq SINE Alu 0 308 1 1813 164 0 22 chr4 7457255 7457567 -194870780 + AluJb SINE Alu 1 305 -7 2068 110 7 3 chr4 7457576 7457868 -194870479 + AluSq SINE Alu 1 293 -20 242 73 24 0 chr4 7458781 7458822 -194869525 + (TG)n Simple_repeat Simple_repeat 1 42 0 367 345 79 0 chr4 7459016 7459181 -194869166 + MIR SINE MIR 48 225 -37 326 200 124 57 chr4 7460054 7460159 -194868188 + L2 LINE L2 3174 3285 -28 306 0 0 0 chr4 7460179 7460213 -194868134 + (TGAA)n Simple_repeat Simple_repeat 2 35 0 180 0 0 0 chr4 7460841 7460861 -194867486 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 2468 123 31 14 chr4 7460863 7461221 -194867126 + THE1B LTR MaLR 1 364 0 275 315 120 0 chr4 7461763 7461871 -194866476 + L2 LINE L2 3144 3264 -8 329 298 168 8 chr4 7462231 7462362 -194865985 + L1ME4a LINE L1 5953 6104 -17 195 281 42 10 chr4 7462761 7462857 -194865490 - MIR SINE MIR -77 131 33 1576 180 68 22 chr4 7462957 7463025 -194865322 + MLT1B LTR MaLR 3 66 -324 1133 106 0 150 chr4 7463025 7463252 -194865095 - 7SK RNA RNA 0 193 1 1576 180 68 22 chr4 7463252 7463538 -194864809 + MLT1B LTR MaLR 66 373 -17 271 303 110 0 chr4 7463560 7463715 -194864632 - L3 LINE CR1 -111 1466 1295 199 305 63 21 chr4 7463798 7463893 -194864454 - L2 LINE L2 -212 3101 3003 1648 177 7 7 chr4 7463928 7464227 -194864120 - AluJo SINE Alu -12 300 2 182 37 37 0 chr4 7464227 7464254 -194864093 + (TTTA)n Simple_repeat Simple_repeat 4 31 0 1722 144 38 17 chr4 7464299 7464590 -194863757 - AluJo SINE Alu -15 297 1 2153 51 44 7 chr4 7465362 7465671 -194862676 - AluY SINE Alu 0 319 1 1375 154 4 0 chr4 7465705 7465975 -194862372 - AluSx SINE Alu 0 328 58 429 288 11 33 chr4 7466205 7466432 -194861915 + CT-rich Low_complexity Low_complexity 1 222 0 467 266 0 12 chr4 7466698 7466867 -194861480 + GA-rich Low_complexity Low_complexity 1 167 0 457 309 53 0 chr4 7466976 7467128 -194861219 - MIR SINE MIR -73 189 30 264 308 98 49 chr4 7467535 7467821 -194860526 - L2 LINE L2 -52 3220 2921 * 338 280 150 24 chr4 7467818 7468025 -194860322 - L2 LINE L2 -529 2785 2553 180 367 60 60 chr4 7468498 7468697 -194859650 - L2 LINE L2 -42 3230 3032 410 288 88 12 chr4 7468733 7468903 -194859444 - MIR SINE MIR 0 262 80 193 331 39 47 chr4 7468880 7469007 -194859340 + MIR SINE MIR 41 166 -96 * 566 208 101 0 chr4 7468986 7469135 -194859212 + MER5A DNA MER1_type 26 189 0 427 282 63 14 chr4 7469156 7469298 -194859049 + MER5B DNA MER1_type 14 162 -16 613 219 27 27 chr4 7470247 7470393 -194857954 - L2 LINE L2 -1 3312 3167 236 360 56 8 chr4 7470728 7470853 -194857494 - L2 LINE L2 -39 3233 3103 436 306 19 32 chr4 7470964 7471121 -194857226 - MIR SINE MIR -99 163 9 963 213 54 77 chr4 7471668 7471710 -194856637 - MLT1A1 LTR MaLR -20 345 304 1664 171 0 49 chr4 7471710 7472015 -194856332 + AluJb SINE Alu 1 290 -22 963 213 54 77 chr4 7472015 7472325 -194856022 - MLT1A1 LTR MaLR -61 304 1 463 272 48 0 chr4 7472488 7472613 -194855734 + MIR SINE MIR 96 226 -36 189 238 0 0 chr4 7472935 7472977 -194855370 + MIR SINE MIR 112 153 -55 241 250 65 9 chr4 7473064 7473172 -194855175 - MER103 DNA DNA -47 119 6 231 342 40 20 chr4 7473433 7473582 -194854765 - L2 LINE L2 -527 2787 2636 404 211 22 0 chr4 7473763 7473853 -194854494 - MLT1I LTR MaLR -1 408 317 372 248 90 8 chr4 7473945 7474078 -194854269 - MLT1J2 LTR MaLR -240 210 67 382 287 16 25 chr4 7474939 7475061 -194853286 + L2 LINE L2 3180 3300 -13 777 79 0 0 chr4 7475061 7475175 -194853172 + (TGGA)n Simple_repeat Simple_repeat 1 114 0 231 250 14 14 chr4 7475658 7475730 -194852617 + LTR16C LTR ERVL 418 489 -2 298 289 12 0 chr4 7475767 7475850 -194852497 - L2 LINE L2 -276 3037 2954 757 245 0 16 chr4 7475850 7476042 -194852305 - MLT1A1 LTR MaLR 0 365 177 1489 133 3 98 chr4 7476043 7476428 -194851919 - MER4A LTR ERV1 0 664 257 375 165 94 0 chr4 7476428 7476513 -194851834 - MER4A LTR ERV1 -571 93 1 * 745 234 5 11 chr4 7476513 7476693 -194851654 - MLT1A1 LTR MaLR -186 179 1 1418 242 35 113 chr4 7476694 7477272 -194851075 - L2 LINE L2 -359 2955 2423 1654 261 60 12 chr4 7477479 7477961 -194850386 - MLT1D LTR MaLR 0 505 1 438 339 63 27 chr4 7478432 7478653 -194849694 - MIR SINE MIR -6 256 28 735 191 35 30 chr4 7478919 7479118 -194849229 + MLT2D LTR ERVL 208 407 -7 362 270 40 24 chr4 7479120 7479246 -194849101 + L1MC4 LINE L1 7785 7912 -130 237 234 0 0 chr4 7479246 7479293 -194849054 + (TG)n Simple_repeat Simple_repeat 2 48 0 321 299 76 35 chr4 7479313 7479457 -194848890 + L1MC4 LINE L1 6595 6744 -1298 303 248 38 29 chr4 7481048 7481153 -194847194 + L1ME3A LINE L1 5664 5769 -401 469 246 12 76 chr4 7481160 7481331 -194847016 + L1ME3A LINE L1 6006 6165 -5 929 160 7 7 chr4 7481378 7481528 -194846819 + FRAM SINE Alu 2 151 -15 339 403 31 13 chr4 7481825 7482143 -194846204 + L1MC/D LINE L1 5449 5772 -2036 2426 59 0 3 chr4 7482198 7482501 -194845846 + AluY SINE Alu 1 302 -9 798 96 52 0 chr4 7483535 7483650 -194844697 - L1PA11 LINE L1 0 6174 6054 520 259 109 10 chr4 7483698 7483899 -194844448 + MLT1C LTR MaLR 240 460 -7 843 155 20 85 chr4 7485221 7485306 -194843041 - MLT1B LTR MaLR -203 187 98 2246 119 0 0 chr4 7485306 7485616 -194842731 - AluSx SINE Alu -2 310 1 843 155 20 85 chr4 7485616 7485730 -194842617 - MLT1B LTR MaLR -292 98 1 760 321 4 20 chr4 7486428 7486680 -194841667 + MIR SINE MIR 15 262 0 1958 184 34 50 chr4 7487855 7488273 -194840074 - MLT2D LTR ERVL 0 414 4 475 253 266 0 chr4 7488680 7488838 -194839509 - MIR SINE MIR -25 237 38 499 146 115 0 chr4 7489006 7489102 -194839245 + MER53 DNA DNA 1 107 -82 208 254 111 0 chr4 7489450 7489513 -194838834 + MIR SINE MIR 113 182 -80 591 258 82 6 chr4 7489945 7490104 -194838243 + MIR SINE MIR 44 214 -48 536 342 127 39 chr4 7490234 7490515 -194837832 - L1ME4a LINE L1 -109 6012 5757 2444 53 0 13 chr4 7490515 7490818 -194837529 - AluY SINE Alu -12 299 1 536 342 127 39 chr4 7490818 7491011 -194837336 - L1ME4a LINE L1 -364 5757 5485 23 68 0 0 chr4 7491154 7491198 -194837149 + AT_rich Low_complexity Low_complexity 1 44 0 301 310 84 40 chr4 7491626 7491724 -194836623 + L1M4 LINE L1 2924 3016 -3130 2162 106 3 3 chr4 7491724 7492026 -194836321 - AluSc SINE Alu -7 302 1 301 310 84 40 chr4 7492026 7492472 -194835875 + L1M4 LINE L1 3016 3492 -2654 203 79 26 0 chr4 7493240 7493278 -194835069 + (TTTTTG)n Simple_repeat Simple_repeat 2 40 0 238 121 35 35 chr4 7493297 7493355 -194834992 + GA-rich Low_complexity Low_complexity 1 58 0 428 331 95 63 chr4 7493798 7494145 -194834202 + L3 LINE CR1 1146 1503 -74 498 330 77 27 chr4 7494307 7494568 -194833779 + MLT1L LTR MaLR 101 374 -241 312 234 0 0 chr4 7495594 7495658 -194832689 - MIR SINE MIR -121 141 78 711 154 18 0 chr4 7496045 7496214 -194832133 + (TCCA)n Simple_repeat Simple_repeat 1 172 0 821 139 23 0 chr4 7496229 7496402 -194831945 + (TCCA)n Simple_repeat Simple_repeat 4 180 0 576 190 18 0 chr4 7496424 7496647 -194831700 + (TCCA)n Simple_repeat Simple_repeat 1 227 0 697 151 30 0 chr4 7496662 7496828 -194831519 + (TCCA)n Simple_repeat Simple_repeat 2 172 0 272 349 84 44 chr4 7496974 7497249 -194831098 - L2 LINE L2 -173 3099 2814 271 282 104 37 chr4 7498284 7498422 -194829925 - MIR SINE MIR -59 149 13 377 82 0 87 chr4 7498993 7499177 -194829170 + (CACCT)n Simple_repeat Simple_repeat 3 170 0 1786 143 0 0 chr4 7499271 7499529 -194828818 - AluSx SINE Alu -11 301 44 238 95 0 24 chr4 7499561 7499603 -194828744 + Alu SINE Alu 130 170 -133 2252 76 0 19 chr4 7499809 7500123 -194828224 + AluSg SINE Alu 1 308 -2 2349 63 0 16 chr4 7500594 7500897 -194827450 - AluY SINE Alu -13 298 1 238 320 0 0 chr4 7502498 7502573 -194825774 + C-rich Low_complexity Low_complexity 2 76 0 236 213 25 41 chr4 7503364 7503486 -194824861 + (CGG)n Simple_repeat Simple_repeat 2 121 0 231 123 15 77 chr4 7503548 7503678 -194824669 + (CGG)n Simple_repeat Simple_repeat 2 123 0 281 306 37 0 chr4 7504143 7504251 -194824096 - MIR SINE MIR -135 127 16 227 400 100 5 chr4 7505357 7505577 -194822770 + L2 LINE L2 2470 2710 -604 212 308 128 26 chr4 7505661 7505778 -194822569 + L2 LINE L2 2934 3062 -251 201 196 22 43 chr4 7505887 7505933 -194822414 - MIR SINE MIR -216 46 2 184 300 14 29 chr4 7506035 7506105 -194822242 + MER5A DNA MER1_type 7 75 -114 180 235 147 0 chr4 7506219 7506287 -194822060 - MER5A DNA MER1_type -95 94 17 368 378 65 5 chr4 7506492 7506693 -194821654 - MIR SINE MIR -40 222 10 554 241 106 6 chr4 7508466 7508636 -194819711 - MER5A DNA MER1_type -2 187 1 21 0 0 0 chr4 7508673 7508694 -194819653 + AT_rich Low_complexity Low_complexity 1 21 0 1911 196 102 35 chr4 7508696 7509216 -194819131 - L1MB3 LINE L1 -3 6180 5616 1880 121 15 0 chr4 7509216 7509481 -194818866 - AluJb SINE Alu -18 294 26 1911 196 102 35 chr4 7509481 7509538 -194818809 - L1MB3 LINE L1 -567 5616 5564 223 351 77 24 chr4 7511027 7511195 -194817152 + MIR SINE MIR 37 213 -49 2544 52 0 0 chr4 7511715 7512023 -194816324 - AluY SINE Alu -3 308 1 242 228 101 13 chr4 7512711 7512790 -194815557 - MIR SINE MIR -60 148 63 321 290 32 11 chr4 7513890 7513983 -194814364 + MIR SINE MIR 51 145 -63 597 213 107 6 chr4 7516988 7517157 -194811190 + MER5A DNA MER1_type 1 186 -3 24 32 0 0 chr4 7517221 7517252 -194811095 + AT_rich Low_complexity Low_complexity 1 31 0 2340 70 0 0 chr4 7517635 7517920 -194810427 + AluSc SINE Alu 3 287 -22 2158 109 0 13 chr4 7518245 7518557 -194809790 - AluSq SINE Alu -5 308 1 736 160 146 7 chr4 7518838 7518982 -194809365 + MER46A DNA MER2_type 1 164 -72 1060 167 171 42 chr4 7518997 7519284 -194809063 + MER7A DNA MER2_type 24 345 -1 334 192 55 0 chr4 7519284 7519357 -194808990 + MER46A DNA MER2_type 159 235 -1 23 0 0 0 chr4 7520211 7520234 -194808113 + AT_rich Low_complexity Low_complexity 1 23 0 472 332 142 0 chr4 7521582 7521877 -194806470 - L2 LINE L2 -982 2332 1996 228 318 114 15 chr4 7522019 7522151 -194806196 + MIR SINE MIR 13 157 -105 237 33 0 0 chr4 7522612 7522642 -194805705 + (TA)n Simple_repeat Simple_repeat 2 31 0 2276 64 0 17 chr4 7522643 7522938 -194805409 - AluY SINE Alu -21 290 1 1762 156 31 0 chr4 7523223 7523512 -194804835 - AluJb SINE Alu -14 298 1 213 108 0 0 chr4 7524614 7524651 -194803696 + (TCTA)n Simple_repeat Simple_repeat 4 40 0 1532 137 129 0 chr4 7524662 7524925 -194803422 - AluSx SINE Alu -15 297 1 809 181 29 23 chr4 7524935 7525106 -194803241 - AluJo SINE Alu -24 288 117 2109 95 3 20 chr4 7525368 7525672 -194802675 + AluSp SINE Alu 10 308 -5 1888 62 0 19 chr4 7525981 7526240 -194802107 - AluY SINE Alu -13 298 45 1474 185 10 27 chr4 7526548 7526840 -194801507 + AluJb SINE Alu 1 287 -25 319 280 110 8 chr4 7527572 7527690 -194800657 + L2 LINE L2 3143 3272 0 191 275 0 0 chr4 7527722 7527762 -194800585 - L2 LINE L2 -12 3301 3262 2293 78 0 10 chr4 7528213 7528509 -194799838 - AluSg SINE Alu -17 293 1 2306 93 0 0 chr4 7528910 7529210 -194799137 - AluSx SINE Alu -12 300 1 321 288 117 0 chr4 7529350 7529461 -194798886 + MIR3 SINE MIR 33 156 -52 316 330 69 12 chr4 7529723 7529896 -194798451 - MIR SINE MIR -64 198 16 1874 104 42 21 chr4 7530989 7531278 -194797069 - AluSc SINE Alu -14 295 1 185 313 48 0 chr4 7531772 7531855 -194796492 + MIR SINE MIR 154 240 -22 1901 120 46 0 chr4 7535377 7535661 -194792686 - AluSg SINE Alu -13 297 1 1707 184 0 9 chr4 7536079 7536394 -194791953 + AluJb SINE Alu 1 312 0 2289 89 0 3 chr4 7536494 7536796 -194791551 + AluSg SINE Alu 1 301 -9 266 190 16 38 chr4 7537026 7537210 -194791137 + (TG)n Simple_repeat Simple_repeat 1 180 0 494 199 11 43 chr4 7537302 7537488 -194790859 + (TG)n Simple_repeat Simple_repeat 1 180 0 285 198 31 43 chr4 7537442 7537604 -194790743 + (GTGTG)n Simple_repeat Simple_repeat 1 160 0 * 437 214 21 24 chr4 7537531 7537921 -194790426 + (TG)n Simple_repeat Simple_repeat 1 388 0 722 270 97 68 chr4 7537961 7537991 -194790356 + L1MC5 LINE L1 7422 7450 -511 2050 114 0 14 chr4 7537991 7538288 -194790059 - AluSg SINE Alu -17 293 1 2006 158 0 0 chr4 7538294 7538604 -194789743 - AluJb SINE Alu -2 310 1 722 270 97 68 chr4 7538604 7539062 -194789285 + L1MC5 LINE L1 7454 7931 -30 449 165 247 0 chr4 7539085 7539182 -194789165 + AluJb SINE Alu 174 294 -18 2214 104 0 10 chr4 7541936 7542245 -194786102 - AluSg1 SINE Alu -3 306 1 28 71 0 0 chr4 7543504 7543560 -194784787 + AT_rich Low_complexity Low_complexity 1 56 0 1791 182 3 0 chr4 7543601 7543903 -194784444 - AluJb SINE Alu -9 303 1 286 250 25 12 chr4 7544252 7544332 -194784015 - MIR SINE MIR -56 206 126 853 167 20 0 chr4 7544348 7544533 -194783814 + AluSg/x SINE Alu 129 316 0 2091 102 7 0 chr4 7545899 7546202 -194782145 + AluY SINE Alu 1 305 -6 25 31 0 0 chr4 7547057 7547089 -194781258 + AT_rich Low_complexity Low_complexity 1 32 0 543 267 82 19 chr4 7547242 7547448 -194780899 - MER20 DNA MER1_type 0 219 1 2475 39 0 20 chr4 7547837 7548142 -194780205 - AluY SINE Alu -12 299 1 360 333 49 27 chr4 7548209 7548434 -194779913 + MIR SINE MIR 31 260 -2 542 286 38 72 chr4 7550657 7550919 -194777428 + MER112 DNA MER1_type 2 254 -2 366 322 6 76 chr4 7551017 7551112 -194777235 - MIR3 SINE MIR -50 158 132 2092 124 3 0 chr4 7551112 7551418 -194776929 + AluSx SINE Alu 1 307 -5 366 322 6 76 chr4 7551418 7551524 -194776823 - MIR3 SINE MIR -76 132 20 2281 82 3 0 chr4 7553110 7553414 -194774933 - AluY SINE Alu -6 305 1 227 228 101 13 chr4 7554102 7554181 -194774166 - MIR SINE MIR -60 148 63 307 290 32 11 chr4 7555281 7555374 -194772973 + MIR SINE MIR 51 145 -63 597 213 107 6 chr4 7558379 7558548 -194769799 + MER5A DNA MER1_type 1 186 -3 24 32 0 0 chr4 7558612 7558643 -194769704 + AT_rich Low_complexity Low_complexity 1 31 0 2340 70 0 0 chr4 7559026 7559311 -194769036 + AluSc SINE Alu 3 287 -22 2143 109 0 13 chr4 7559636 7559948 -194768399 - AluSq SINE Alu -5 308 1 227 228 101 13 chr4 7560635 7560714 -194767633 - MIR SINE MIR -60 148 63 307 290 32 11 chr4 7561814 7561907 -194766440 + MIR SINE MIR 51 145 -63 427 181 0 36 chr4 7566629 7566712 -194761635 - FLAM SINE Alu -17 126 47 282 182 0 18 chr4 7566849 7566904 -194761443 + Alu SINE Alu 240 293 -8 605 225 0 0 chr4 7567005 7567125 -194761222 + FLAM_A SINE Alu 20 139 -3 278 245 53 0 chr4 7567365 7567459 -194760888 - L1M4 LINE L1 -2573 3573 3475 810 217 44 6 chr4 7567777 7567957 -194760390 - MER5A DNA MER1_type 0 189 3 228 255 31 51 chr4 7567969 7568067 -194760280 + L2 LINE L2 3169 3264 -49 835 234 86 111 chr4 7568416 7568665 -194759682 - L1ME LINE L1 -5156 927 673 1944 129 3 7 chr4 7568665 7568960 -194759387 + AluJb SINE Alu 1 294 -18 2041 120 3 7 chr4 7568962 7569304 -194759043 + AluSx SINE Alu 1 312 0 835 234 86 111 chr4 7569304 7569619 -194758728 - L1ME LINE L1 -5411 672 400 402 153 0 0 chr4 7570067 7570126 -194758221 + AluS SINE Alu 17 75 -238 23 0 0 0 chr4 7570429 7570452 -194757895 + AT_rich Low_complexity Low_complexity 1 23 0 280 233 55 0 chr4 7571306 7571379 -194756968 - Tigger4(Zombi) DNA MER2_type -1 2730 2654 313 257 14 0 chr4 7571379 7571453 -194756894 - Tigger3(Golem) DNA MER2_type -1 3028 2954 365 303 68 25 chr4 7571716 7571878 -194756469 + MIR SINE MIR 20 188 -74 1530 218 166 12 chr4 7572147 7572629 -194755718 + L1MC4 LINE L1 6830 7385 -657 2391 70 0 0 chr4 7572634 7572935 -194755412 + AluY SINE Alu 6 306 -5 222 149 43 0 chr4 7573249 7573296 -194755051 + MIR SINE MIR 105 153 -55 626 276 22 0 chr4 7573448 7573629 -194754718 - AluSp SINE Alu -118 195 11 667 285 45 58 chr4 7573639 7573951 -194754396 + L2 LINE L2 3006 3313 0 234 200 0 0 chr4 7573968 7574013 -194754334 + L2 LINE L2 3210 3254 -18 1440 120 0 0 chr4 7574522 7574722 -194753625 + AluSg SINE Alu 1 200 -110 1258 201 0 12 chr4 7575425 7575674 -194752673 - AluJo SINE Alu -66 246 1 437 234 188 8 chr4 7575692 7575820 -194752527 - MLT1E1 LTR MaLR -503 151 1 1285 254 197 32 chr4 7575820 7576489 -194751858 - L2 LINE L2 -586 2728 1912 1722 113 45 0 chr4 7576489 7576755 -194751592 + AluSg SINE Alu 33 310 0 1285 254 197 32 chr4 7576755 7576863 -194751484 - L2 LINE L2 -1402 1912 1823 1301 155 9 13 chr4 7576863 7577095 -194751252 + AluJo SINE Alu 1 231 -81 259 109 0 43 chr4 7577135 7577181 -194751166 + AluJo SINE Alu 229 272 -30 400 247 79 39 chr4 7577185 7577363 -194750984 - L2 LINE L2 -1481 1833 1649 1449 127 0 0 chr4 7577576 7577788 -194750559 + AluSg/x SINE Alu 98 309 -1 1453 59 53 0 chr4 7578838 7579025 -194749322 + MER107 DNA MER1_type 1 197 0 402 200 265 6 chr4 7579062 7579232 -194749115 - L2 LINE L2 -1186 2128 1915 897 250 11 0 chr4 7579775 7579959 -194748388 - MER5A DNA MER1_type -3 186 1 535 138 0 12 chr4 7580215 7580295 -194748052 - AluJ/FLAM SINE Alu -232 80 2 730 178 0 0 chr4 7580296 7580431 -194747916 - MER4C LTR ERV1 -330 135 1 207 196 0 69 chr4 7581529 7581631 -194746716 + (CACAC)n Simple_repeat Simple_repeat 1 95 0 * 494 189 19 36 chr4 7581571 7581965 -194746382 + (CA)n Simple_repeat Simple_repeat 1 387 0 266 190 16 38 chr4 7582057 7582241 -194746106 + (CA)n Simple_repeat Simple_repeat 1 180 0 2098 123 0 0 chr4 7582471 7582772 -194745575 - AluSg SINE Alu -9 301 1 1975 161 0 0 chr4 7582778 7583088 -194745259 - AluJb SINE Alu -2 310 1 180 356 8 51 chr4 7583384 7583502 -194744845 - MIR SINE MIR -42 220 108 2177 105 3 0 chr4 7587897 7588201 -194740146 + AluSx SINE Alu 1 305 -7 216 97 0 0 chr4 7588444 7588475 -194739872 + (TTCA)n Simple_repeat Simple_repeat 4 34 0 1002 190 51 0 chr4 7589082 7589277 -194739070 + MER3 DNA MER1_type 1 205 -4 228 289 195 6 chr4 7589450 7589609 -194738738 + L2 LINE L2 2910 3098 -215 256 315 108 0 chr4 7590180 7590291 -194738056 - MIR3 SINE MIR -26 182 60 399 262 210 15 chr4 7591589 7591860 -194736487 + L2 LINE L2 1005 1328 -1986 808 186 3 43 chr4 7591882 7592171 -194736176 + MLT1A1 LTR MaLR 1 347 -18 2228 94 3 19 chr4 7592171 7592489 -194735858 + AluSp SINE Alu 1 313 0 808 186 3 43 chr4 7592489 7592508 -194735839 + MLT1A1 LTR MaLR 347 365 0 4669 165 45 12 chr4 7592586 7593412 -194734935 + L1MC1 LINE L1 5481 6333 0 1425 99 0 0 chr4 7593444 7593626 -194734721 + AluSx SINE Alu 1 182 -130 736 312 67 10 chr4 7593903 7594217 -194734130 + L1ME3A LINE L1 5763 6094 -76 2115 89 3 16 chr4 7594703 7594870 -194733477 - AluSx SINE Alu -12 300 137 2184 88 3 3 chr4 7594870 7595165 -194733182 - AluY SINE Alu -16 295 1 2115 89 3 16 chr4 7595165 7595301 -194733046 - AluSx SINE Alu -175 137 1 320 277 62 4 chr4 7595579 7595695 -194732652 + MIR SINE MIR 30 148 -62 1945 120 43 10 chr4 7595760 7596059 -194732288 + AluSg SINE Alu 1 309 -1 356 324 35 28 chr4 7596143 7596288 -194732059 - L2 LINE L2 -1 3312 3167 675 249 23 34 chr4 7596363 7596540 -194731807 + MER5B DNA MER1_type 3 177 -1 2480 52 3 3 chr4 7596595 7596904 -194731443 - AluSp SINE Alu -4 309 1 346 326 0 0 chr4 7598718 7598816 -194729531 - L2 LINE L2 -208 3064 2967 234 291 89 0 chr4 7599070 7599149 -194729198 + MLT1J1 LTR MaLR 16 101 -345 248 281 117 41 chr4 7599150 7599321 -194729026 + MLT1J2 LTR MaLR 115 298 -152 2086 102 0 14 chr4 7600287 7600580 -194727767 - AluSx SINE Alu -23 289 1 269 322 63 21 chr4 7601001 7601144 -194727203 + MIR SINE MIR 80 228 -34 359 279 74 16 chr4 7601676 7601798 -194726549 - L2 LINE L2 -5 3308 3180 337 241 58 0 chr4 7601819 7601906 -194726441 + MER69 DNA AcHobo 2435 2526 0 261 225 234 0 chr4 7602012 7602123 -194726224 - Charlie8 DNA MER1_type -2245 172 36 1372 159 40 0 chr4 7603346 7603573 -194724774 + AluJb SINE Alu 42 277 -35 206 0 69 0 chr4 7603580 7603609 -194724738 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 336 48 0 0 chr4 7604045 7604087 -194724260 + (CA)n Simple_repeat Simple_repeat 1 42 0 1617 171 6 32 chr4 7604102 7604418 -194723929 - AluJo SINE Alu -4 308 1 2511 24 0 7 chr4 7604573 7604869 -194723478 - AluYa5 SINE Alu -17 294 1 1799 158 0 32 chr4 7605766 7606076 -194722271 - AluJb SINE Alu -12 300 1 2033 97 7 7 chr4 7609490 7609780 -194718567 - AluSx SINE Alu -22 290 1 574 93 0 0 chr4 7610296 7610371 -194717976 - AluJ/FRAM SINE Alu -8 304 230 623 143 0 36 chr4 7610571 7610683 -194717664 + AluSg/x SINE Alu 201 308 -2 2086 128 0 0 chr4 7610757 7611054 -194717293 - AluSx SINE Alu -15 297 1 192 308 115 8 chr4 7611914 7612044 -194716303 + L2 LINE L2 2811 2954 -318 188 295 33 82 chr4 7612286 7612408 -194715939 - MIR SINE MIR -79 183 68 277 270 37 0 chr4 7612752 7612844 -194715503 + MIR SINE MIR 69 164 -68 1142 84 0 0 chr4 7612877 7613019 -194715328 - AluSq/x SINE Alu -171 142 1 303 331 81 12 chr4 7613020 7613180 -194715167 - MIR SINE MIR -80 182 12 194 208 75 0 chr4 7613217 7613270 -194715077 - L2 LINE L2 -74 3198 3142 182 226 218 16 chr4 7613287 7613411 -194714936 + L2 LINE L2 2888 3036 -236 859 178 62 39 chr4 7613752 7613960 -194714387 + MER20 DNA MER1_type 7 219 0 258 264 91 36 chr4 7614154 7614264 -194714083 - MIR SINE MIR -140 122 7 261 220 0 0 chr4 7614325 7614375 -194713972 + L2 LINE L2 3137 3186 -86 194 243 0 81 chr4 7614765 7614839 -194713508 + MIR SINE MIR 75 142 -120 304 321 58 15 chr4 7615265 7615402 -194712945 - MIR SINE MIR -4 258 116 260 287 78 17 chr4 7615482 7615597 -194712750 - MIR SINE MIR -67 141 20 204 317 67 0 chr4 7615629 7615733 -194712614 - MER5A DNA MER1_type -42 147 37 184 42 0 0 chr4 7616280 7616304 -194712043 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1821 114 102 0 chr4 7616304 7616559 -194711788 - AluSx SINE Alu -1 304 1 2137 122 0 3 chr4 7618356 7618651 -194709696 - AluSx SINE Alu -18 294 1 311 291 88 11 chr4 7619026 7619151 -194709196 - MIR SINE MIR -68 140 51 700 224 68 6 chr4 7619353 7619514 -194708833 + FAM SINE Alu 2 172 -3 2424 93 0 0 chr4 7619575 7619875 -194708472 + AluSg SINE Alu 1 300 -10 1248 131 0 6 chr4 7619875 7620050 -194708297 + AluSg/x SINE Alu 132 305 -5 1678 176 13 20 chr4 7620064 7620370 -194707977 + AluJb SINE Alu 3 306 -6 2338 97 0 3 chr4 7620489 7620788 -194707559 + AluSq SINE Alu 1 298 -15 956 170 12 29 chr4 7621129 7621300 -194707047 + FRAM SINE Alu 1 167 -9 1282 164 9 13 chr4 7621440 7621650 -194706697 + AluJo SINE Alu 86 296 -16 2466 85 0 0 chr4 7621650 7621956 -194706391 + AluSg SINE Alu 1 306 -4 1282 164 9 13 chr4 7621956 7621971 -194706376 + AluJo SINE Alu 296 310 -2 2250 91 7 0 chr4 7622129 7622416 -194705931 + AluSq SINE Alu 7 295 -18 370 297 24 91 chr4 7622915 7623124 -194705223 + MIR SINE MIR 57 251 -11 186 152 0 0 chr4 7624089 7624122 -194704225 + L2 LINE L2 3021 3053 -260 2311 93 0 35 chr4 7625425 7625737 -194702610 - AluSq SINE Alu -12 301 1 352 246 169 27 chr4 7625888 7626071 -194702276 - MIR SINE MIR -26 236 28 2375 99 3 0 chr4 7626509 7626812 -194701535 - AluSx SINE Alu -8 304 1 1719 137 56 14 chr4 7627419 7627587 -194700760 - AluJb SINE Alu -15 297 111 180 0 0 0 chr4 7627587 7627607 -194700740 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1719 137 56 14 chr4 7627607 7627723 -194700624 - AluJb SINE Alu -201 111 1 277 255 122 20 chr4 7627991 7628089 -194700258 - MIR SINE MIR -131 131 24 2190 131 3 6 chr4 7628275 7628589 -194699758 + AluSq SINE Alu 1 313 0 797 328 8 0 chr4 7628623 7628864 -194699483 + MIR SINE MIR 20 262 0 240 258 21 43 chr4 7629032 7629125 -194699222 + MIR3 SINE MIR 112 202 -6 29 0 0 0 chr4 7629142 7629171 -194699176 + AT_rich Low_complexity Low_complexity 1 29 0 265 109 0 0 chr4 7629171 7629217 -194699130 - AluSc SINE Alu 0 299 254 444 268 150 0 chr4 7629408 7629561 -194698786 + MER5B DNA MER1_type 3 178 0 192 294 88 0 chr4 7629630 7629732 -194698615 - MIR SINE MIR -65 143 33 242 337 47 0 chr4 7629795 7629881 -194698466 + L2 LINE L2 3143 3232 -40 2105 141 0 3 chr4 7631573 7631886 -194696461 + AluJb SINE Alu 1 312 0 280 216 72 36 chr4 7631944 7632055 -194696292 - MIR3 SINE MIR -7 201 87 2337 83 3 25 chr4 7633336 7633650 -194694697 + AluY SINE Alu 1 307 -4 1961 157 3 0 chr4 7633791 7634091 -194694256 - AluJo SINE Alu -11 301 1 211 224 0 35 chr4 7634091 7634149 -194694198 - MIR SINE MIR -101 161 106 1719 149 39 62 chr4 7634325 7634482 -194693865 - AluJb SINE Alu -10 302 154 2060 112 42 3 chr4 7634482 7634767 -194693580 - AluSx SINE Alu -16 296 1 1719 149 39 62 chr4 7634767 7634918 -194693429 - AluJb SINE Alu -158 154 1 2363 94 0 16 chr4 7635480 7635788 -194692559 - AluSq SINE Alu -10 303 1 2224 125 0 0 chr4 7635791 7636088 -194692259 - AluSx SINE Alu -15 297 1 1074 150 0 0 chr4 7636418 7636578 -194691769 + AluSg/x SINE Alu 144 303 -6 2523 69 3 0 chr4 7636704 7637008 -194691339 + AluY SINE Alu 1 305 -6 2636 85 16 6 chr4 7637028 7637394 -194690953 + THE1C LTR MaLR 1 370 -5 1876 187 3 42 chr4 7637511 7637891 -194690456 - MLT1A1 LTR MaLR 0 365 1 180 313 0 0 chr4 7637956 7638004 -194690343 - L2 LINE L2 -596 2718 2671 2349 94 0 7 chr4 7638226 7638524 -194689823 - AluSq SINE Alu -17 296 1 2074 133 26 0 chr4 7638540 7638842 -194689505 - AluSx SINE Alu -2 310 1 1472 142 104 4 chr4 7639539 7639779 -194688568 - AluJo SINE Alu -12 300 37 377 265 99 88 chr4 7639806 7640089 -194688258 - L1MC5 LINE L1 -37 7924 7639 1929 138 7 10 chr4 7640605 7640901 -194687446 - AluJb SINE Alu -4 308 14 278 240 91 50 chr4 7641257 7641378 -194686969 - MIR SINE MIR -117 145 20 214 318 15 0 chr4 7642023 7642089 -194686258 + L2 LINE L2 3242 3308 -5 2025 153 59 50 chr4 7642248 7642479 -194685868 + MSTA LTR MaLR 1 239 -189 2406 96 0 0 chr4 7642479 7642771 -194685576 + AluSp SINE Alu 1 292 -21 2025 153 59 50 chr4 7642771 7642963 -194685384 + MSTA LTR MaLR 239 428 0 2278 93 101 25 chr4 7643271 7643669 -194684678 - MSTA LTR MaLR 0 428 1 2531 140 56 22 chr4 7646024 7646159 -194682188 + MER4C LTR ERV1 1 130 -335 1590 138 109 4 chr4 7646159 7646434 -194681913 + AluJb SINE Alu 1 304 -8 2531 140 56 22 chr4 7646434 7646748 -194681599 + MER4C LTR ERV1 130 465 0 340 282 40 16 chr4 7646756 7646880 -194681467 - MIR SINE MIR -56 206 80 2288 87 7 3 chr4 7646929 7647218 -194681129 - AluSx SINE Alu -20 292 3 560 240 157 23 chr4 7647268 7647485 -194680862 + MIR SINE MIR 17 262 0 362 199 202 17 chr4 7647869 7648004 -194680343 + AluSq SINE Alu 107 255 -48 1480 168 75 4 chr4 7648067 7648335 -194680012 + AluJo SINE Alu 2 288 -24 6965 131 38 26 chr4 7648337 7648546 -194679801 + HSMAR2 DNA Mariner 45 250 -1052 2383 96 0 10 chr4 7648546 7648848 -194679499 - AluSc SINE Alu -10 299 1 6965 131 38 26 chr4 7648848 7649881 -194678466 + HSMAR2 DNA Mariner 250 1301 -1 231 204 0 0 chr4 7651310 7651364 -194676983 + (CA)n Simple_repeat Simple_repeat 2 55 0 253 236 97 0 chr4 7653449 7653521 -194674826 - L2 LINE L2 -1 3312 3234 593 302 14 51 chr4 7654557 7654772 -194673575 + MIR SINE MIR 1 207 -55 291 347 75 17 chr4 7654770 7655064 -194673283 - L2 LINE L2 -618 2696 2386 * 237 0 0 0 chr4 7655182 7655210 -194673137 + MLT2A1 LTR ERVL 4 31 -413 2400 65 32 9 chr4 7655212 7655550 -194672797 + HERVL LTR ERVL 5113 5458 -196 420 67 0 0 chr4 7655550 7655610 -194672737 + (TATG)n Simple_repeat Simple_repeat 1 60 0 1938 104 0 0 chr4 7655610 7655850 -194672497 - AluSx SINE Alu -33 279 40 27 29 0 0 chr4 7658685 7658719 -194669628 + AT_rich Low_complexity Low_complexity 1 34 0 2563 72 0 0 chr4 7658719 7659025 -194669322 + AluY SINE Alu 1 306 -5 278 238 188 0 chr4 7659286 7659387 -194668960 + MIR SINE MIR 34 153 -55 212 281 22 45 chr4 7659487 7659517 -194668830 - MIR SINE MIR -70 192 163 2002 144 0 26 chr4 7659517 7659829 -194668518 - AluJo SINE Alu -8 304 1 212 281 22 45 chr4 7659829 7659887 -194668460 - MIR SINE MIR -99 163 106 244 281 34 22 chr4 7659945 7660034 -194668313 + L1ME4a LINE L1 5963 6052 -69 1202 144 0 11 chr4 7660047 7660234 -194668113 - AluSg/x SINE Alu -6 306 122 46 62 0 0 chr4 7660555 7660636 -194667711 + AT_rich Low_complexity Low_complexity 1 81 0 477 72 86 0 chr4 7660636 7660775 -194667572 + (TA)n Simple_repeat Simple_repeat 1 151 0 481 128 26 0 chr4 7660791 7660869 -194667478 + AluSc SINE Alu 214 293 -16 909 194 23 60 chr4 7660869 7661085 -194667262 - LTR8A LTR ERV1 -243 484 277 1152 140 0 0 chr4 7661199 7661377 -194666970 + MER41C LTR ERV1 377 554 0 189 273 18 0 chr4 7664684 7664739 -194663608 - MIR SINE MIR -48 214 159 2119 128 40 0 chr4 7664760 7665056 -194663291 + AluSx SINE Alu 1 308 -4 1082 214 72 7 chr4 7665307 7665611 -194662736 + MER33 DNA MER1_type 1 324 0 921 208 43 14 chr4 7666128 7666335 -194662012 - MIR SINE MIR -43 219 7 352 276 111 50 chr4 7666338 7666519 -194661828 - MIR SINE MIR -51 211 20 3432 135 19 19 chr4 7668690 7669259 -194659088 + L1MB4 LINE L1 5588 6156 -24 1908 133 77 17 chr4 7669272 7669624 -194658723 + THE1C LTR MaLR 1 373 -2 2095 128 0 6 chr4 7670153 7670465 -194657882 - AluSq SINE Alu -3 310 1 2312 65 0 20 chr4 7670972 7671287 -194657060 + AluY SINE Alu 1 311 0 1290 134 0 0 chr4 7671287 7671466 -194656881 + AluSg/x SINE Alu 134 312 0 1507 159 25 70 chr4 7671507 7671821 -194656526 + AluJo SINE Alu 1 300 -12 345 24 0 0 chr4 7671822 7671864 -194656483 + (GGAA)n Simple_repeat Simple_repeat 2 43 0 314 227 21 31 chr4 7671875 7671972 -194656375 + L1ME4a LINE L1 5966 6061 -60 466 37 0 111 chr4 7672895 7672976 -194655371 + L1PA2 LINE L1 6084 6155 0 492 283 28 28 chr4 7673656 7673907 -194654440 + L1MCa LINE L1 1404 1654 -4772 * 836 88 1 33 chr4 7673888 7674026 -194654321 + L1PB1 LINE L1 5659 5791 -360 417 241 0 0 chr4 7674027 7674139 -194654208 + (TA)n Simple_repeat Simple_repeat 2 113 0 2515 106 11 16 chr4 7674139 7674516 -194653831 + L1PB1 LINE L1 5776 6150 -1 304 222 21 0 chr4 7674537 7674613 -194653734 + L1M1 LINE L1 2887 3288 -4278 1240 180 171 59 chr4 7674613 7674969 -194653378 + MSTD LTR MaLR 1 396 0 559 199 85 50 chr4 7675025 7675226 -194653121 + L1MCa LINE L1 2039 2246 -4361 307 248 8 26 chr4 7675235 7675352 -194652995 + L1M1 LINE L1 3557 3671 -3894 5843 170 21 24 chr4 7675473 7677287 -194651060 - L1PA16 LINE L1 -1 6165 4367 2266 113 0 0 chr4 7677323 7677624 -194650723 - AluSg1 SINE Alu -8 301 1 2772 229 132 21 chr4 7677679 7678230 -194650117 + L1M1 LINE L1 3661 4149 -3416 1762 98 8 16 chr4 7678230 7678474 -194649873 + AluY SINE Alu 1 242 -69 2772 229 132 21 chr4 7678474 7679163 -194649184 + L1M1 LINE L1 4149 5110 -2455 2521 56 3 3 chr4 7679163 7679465 -194648882 + AluY SINE Alu 1 302 -9 2772 229 132 21 chr4 7679465 7679559 -194648788 + L1M1 LINE L1 5110 5192 -2373 182 314 64 71 chr4 7680944 7681084 -194647263 + MIR3 SINE MIR 3 141 -67 1158 79 0 0 chr4 7681616 7681768 -194646579 + AluY SINE Alu 160 311 0 2223 109 0 7 chr4 7681908 7682210 -194646137 - AluSx SINE Alu -12 300 1 26 64 0 0 chr4 7682625 7682672 -194645675 + AT_rich Low_complexity Low_complexity 1 47 0 2245 116 0 10 chr4 7682807 7683110 -194645237 + AluSx SINE Alu 1 300 -12 1201 188 127 68 chr4 7683719 7684116 -194644231 - L1M4 LINE L1 -1479 4667 4141 2149 194 124 10 chr4 7684117 7684626 -194643721 - Cheshire DNA MER1_type -299 2121 1555 505 122 0 0 chr4 7684880 7684954 -194643393 + AluS SINE Alu 3 76 -234 285 271 156 65 chr4 7685342 7685682 -194642665 + MLT1K LTR MaLR 184 554 -34 2031 135 10 0 chr4 7686552 7686849 -194641498 - AluSx SINE Alu -12 300 1 198 0 0 0 chr4 7686946 7686968 -194641379 + (A)n Simple_repeat Simple_repeat 1 22 0 1978 149 0 0 chr4 7687217 7687506 -194640841 + AluJb SINE Alu 11 299 -13 288 191 135 11 chr4 7687508 7687597 -194640750 - HAL1 LINE L1 -871 1636 1537 226 260 153 33 chr4 7687769 7687919 -194640428 + MIR3 SINE MIR 20 187 -21 211 239 0 0 chr4 7688056 7688102 -194640245 - L2 LINE L2 -14 3299 3254 181 352 69 21 chr4 7688496 7688641 -194639706 - L2 LINE L2 -222 3050 2899 521 262 52 34 chr4 7689616 7689819 -194638528 - L2 LINE L2 0 3313 3104 1292 179 24 94 chr4 7689819 7690149 -194638198 + AluJo SINE Alu 5 311 -1 521 262 52 34 chr4 7690149 7690178 -194638169 - L2 LINE L2 -209 3104 3077 249 206 43 121 chr4 7690680 7690780 -194637567 - MIR SINE MIR -89 119 29 542 200 156 19 chr4 7691213 7691368 -194636979 - MIR SINE MIR -13 249 73 252 298 81 25 chr4 7691948 7692109 -194636238 + MIR SINE MIR 57 226 -36 198 0 0 0 chr4 7692220 7692242 -194636105 + (CA)n Simple_repeat Simple_repeat 1 22 0 392 272 19 0 chr4 7692246 7692349 -194635998 - MIR3 SINE MIR -22 186 82 647 305 59 25 chr4 7692959 7693313 -194635034 - L2 LINE L2 -28 3285 2920 243 0 0 0 chr4 7693571 7693598 -194634749 + (TG)n Simple_repeat Simple_repeat 2 28 0 229 286 76 17 chr4 7694160 7694279 -194634068 + MIR SINE MIR 63 188 -74 198 191 149 0 chr4 7694468 7694515 -194633832 + L2 LINE L2 3258 3311 -2 5072 64 0 5 chr4 7694860 7695500 -194632847 + L1PA6 LINE L1 5518 6154 0 1544 235 131 22 chr4 7695604 7696055 -194632292 + MLT1H1 LTR MaLR 43 542 -13 22 0 0 0 chr4 7696210 7696232 -194632115 + AT_rich Low_complexity Low_complexity 1 22 0 800 142 40 0 chr4 7696735 7696883 -194631464 + FRAM SINE Alu 22 175 -1 284 274 65 40 chr4 7696884 7697008 -194631339 - MIR SINE MIR -134 128 2 1797 128 0 4 chr4 7697309 7697559 -194630788 - AluJb SINE Alu -4 308 60 565 261 68 54 chr4 7698215 7698317 -194630030 - L2 LINE L2 -4 3309 3210 2334 97 0 0 chr4 7698317 7698615 -194629732 + AluSx SINE Alu 1 298 -14 565 261 68 54 chr4 7698615 7698792 -194629555 - L2 LINE L2 -103 3210 3026 524 197 146 0 chr4 7699263 7699400 -194628947 + L1ME3A LINE L1 6009 6165 -5 2470 77 0 13 chr4 7699612 7699924 -194628423 + AluSg SINE Alu 1 308 -2 238 229 16 33 chr4 7700015 7700076 -194628271 + MLT1K LTR MaLR 59 118 -470 2151 122 10 3 chr4 7700259 7700562 -194627785 + AluSx SINE Alu 1 305 -7 421 278 96 32 chr4 7700680 7700867 -194627480 + MIR SINE MIR 64 262 0 1492 276 128 25 chr4 7701486 7702193 -194626154 + L1MC4 LINE L1 7038 7951 -91 1234 175 44 0 chr4 7702193 7702467 -194625880 + L1MA4 LINE L1 6012 6297 -3 1492 276 128 25 chr4 7702467 7702570 -194625777 + L1MC4 LINE L1 7951 8042 0 1155 168 34 10 chr4 7702576 7702784 -194625563 - AluJb SINE Alu -16 296 84 1257 159 48 0 chr4 7704255 7704463 -194623884 + AluJo SINE Alu 85 302 -10 1010 114 0 0 chr4 7704873 7705005 -194623342 + FRAM SINE Alu 22 153 -23 246 105 0 0 chr4 7705355 7705393 -194622954 + (TC)n Simple_repeat Simple_repeat 1 38 0 1810 143 11 25 chr4 7705411 7705697 -194622650 - AluJb SINE Alu -30 282 1 24 0 0 0 chr4 7706812 7706836 -194621511 + AT_rich Low_complexity Low_complexity 1 24 0 716 237 6 34 chr4 7706954 7707131 -194621216 + FAM SINE Alu 2 173 -2 5723 17 0 2 chr4 7707528 7708165 -194620182 + L1PA3 LINE L1 5497 6132 -23 21 0 0 0 chr4 7709050 7709071 -194619276 + GC_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr4 7709081 7709109 -194619238 + GC_rich Low_complexity Low_complexity 1 28 0 851 161 99 6 chr4 7710723 7710885 -194617462 - FRAM SINE Alu 0 176 1 2294 95 14 0 chr4 7712012 7712307 -194616040 + AluSx SINE Alu 1 299 -13 307 250 33 42 chr4 7713997 7714117 -194614230 - MIR SINE MIR -116 146 28 320 275 130 0 chr4 7714216 7714347 -194614000 + MIR SINE MIR 63 210 -52 2187 115 0 0 chr4 7715573 7715861 -194612486 + AluSx SINE Alu 1 288 -24 2088 98 6 53 chr4 7716412 7716730 -194611617 + AluSq SINE Alu 1 303 -10 2252 112 0 7 chr4 7717352 7717657 -194610690 - AluSc SINE Alu -6 303 1 2427 49 3 3 chr4 7717686 7717970 -194610377 - AluY SINE Alu -16 295 12 1629 60 0 0 chr4 7718406 7718623 -194609724 + GSAT Satellite centromeric 1 217 0 754 123 13 175 chr4 7718858 7719086 -194609261 + 7SK RNA RNA 1 191 -2 2370 90 3 0 chr4 7719190 7719489 -194608858 + AluSx SINE Alu 1 300 -12 1779 159 68 3 chr4 7719497 7719850 -194608497 + L1MB3 LINE L1 5775 6150 -33 2188 108 31 0 chr4 7719934 7720221 -194608126 + AluSg SINE Alu 1 296 -14 429 273 46 41 chr4 7720234 7720377 -194607970 + L1ME3A LINE L1 5959 6105 -65 2338 111 0 0 chr4 7720377 7720684 -194607663 - AluSx SINE Alu -5 307 1 429 273 46 41 chr4 7720684 7720734 -194607613 + L1ME3A LINE L1 6105 6153 -17 236 292 202 6 chr4 7721165 7721333 -194607014 + L2 LINE L2 2558 2758 -556 192 355 11 32 chr4 7721484 7721577 -194606770 + L2 LINE L2 2928 3018 -254 360 278 102 24 chr4 7722161 7722366 -194605981 - MIR SINE MIR -34 228 8 202 275 110 28 chr4 7722846 7722955 -194605392 + L2 LINE L2 3150 3267 -5 197 318 136 45 chr4 7724659 7724857 -194603490 - MIR SINE MIR -26 236 21 1850 148 3 30 chr4 7725565 7725869 -194602478 + AluSx SINE Alu 4 299 -13 180 316 51 26 chr4 7726286 7726403 -194601944 - L2 LINE L2 -15 3257 3138 2324 108 0 13 chr4 7726962 7727098 -194601249 + AluSx SINE Alu 1 137 -175 2260 108 0 3 chr4 7727098 7727394 -194600953 + AluSg SINE Alu 1 295 -15 2324 108 0 13 chr4 7727394 7727564 -194600783 + AluSx SINE Alu 137 303 -9 691 191 37 0 chr4 7727903 7728039 -194600308 + FLAM_C SINE Alu 2 142 -1 253 257 147 9 chr4 7729818 7729934 -194598413 + MIR SINE MIR 45 177 -69 2402 83 7 0 chr4 7730254 7730555 -194597792 - AluSq SINE Alu -10 303 1 351 270 81 9 chr4 7733233 7733344 -194595003 - MIR SINE MIR -72 136 18 262 0 53 0 chr4 7733380 7733418 -194594929 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 1993 133 0 4 chr4 7733423 7733702 -194594645 - AluSx SINE Alu -34 278 1 1601 153 8 4 chr4 7736303 7736544 -194591803 - AluJb SINE Alu -45 267 26 3321 39 11 27 chr4 7736644 7737085 -194591262 + MLT2A1 LTR ERVL 11 444 0 194 299 0 30 chr4 7737170 7737237 -194591110 - L2 LINE L2 -76 3196 3132 388 236 149 43 chr4 7738490 7738651 -194589696 - MER5B DNA MER1_type 0 178 1 496 335 62 0 chr4 7739107 7739301 -194589046 + MIR SINE MIR 27 232 -30 233 273 240 19 chr4 7739719 7739873 -194588474 - MIR SINE MIR -27 235 48 257 290 20 10 chr4 7740040 7740140 -194588207 + L2 LINE L2 2787 2887 -427 207 262 98 0 chr4 7740274 7740335 -194588012 + L2 LINE L2 3209 3275 -38 199 258 86 43 chr4 7740415 7740508 -194587839 + MIR SINE MIR 85 181 -81 291 261 118 25 chr4 7741254 7741373 -194586974 + MIR3 SINE MIR 47 176 -32 318 349 38 0 chr4 7742625 7742757 -194585590 + L2 LINE L2 3127 3263 -9 2037 158 0 3 chr4 7743062 7743372 -194584975 - AluJb SINE Alu -3 309 1 2285 114 3 0 chr4 7743705 7744002 -194584345 - AluSx SINE Alu -14 298 1 275 293 132 9 chr4 7745421 7745527 -194582820 + L2 LINE L2 3153 3271 -1 489 326 95 31 chr4 7745929 7746254 -194582093 + L2 LINE L2 2967 3312 -1 195 269 141 0 chr4 7746665 7746743 -194581604 + MIR SINE MIR 84 172 -90 261 253 0 25 chr4 7747338 7747417 -194580930 + L1ME LINE L1 5743 5819 -302 248 336 118 8 chr4 7747658 7747777 -194580570 + L2 LINE L2 3133 3264 -8 2467 90 0 3 chr4 7748922 7749232 -194579115 + AluSx SINE Alu 1 309 -3 2433 99 3 0 chr4 7749763 7750066 -194578281 - AluSx SINE Alu -8 304 1 405 185 32 140 chr4 7750611 7750629 -194577718 + L1MB3 LINE L1 5459 5477 -706 261 0 0 0 chr4 7750629 7750658 -194577689 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 405 185 32 140 chr4 7750658 7750796 -194577551 + L1MB3 LINE L1 5477 5598 -585 873 118 67 0 chr4 7750808 7750927 -194577420 + AluJo SINE Alu 9 135 -177 2867 134 8 102 chr4 7750929 7751176 -194577171 + L1MB3 LINE L1 5594 5863 -320 1830 132 40 0 chr4 7751176 7751449 -194576898 + AluJb SINE Alu 12 295 -17 2867 134 8 102 chr4 7751449 7751739 -194576608 + L1MB3 LINE L1 5863 6179 -4 2460 97 0 0 chr4 7751739 7752050 -194576297 - AluY SINE Alu 0 311 1 2382 101 0 0 chr4 7752052 7752348 -194575999 - AluSx SINE Alu -16 296 1 2867 134 8 102 chr4 7752348 7752364 -194575983 + L1MB3 LINE L1 6180 6085 -98 1573 187 61 0 chr4 7752364 7752642 -194575705 - AluJo SINE Alu -17 295 1 2867 134 8 102 chr4 7752642 7752733 -194575614 + L1MB3 LINE L1 6084 6182 -1 408 287 89 0 chr4 7753008 7753153 -194575194 - MIR SINE MIR -62 146 34 491 276 24 35 chr4 7753200 7753370 -194574977 + L3 LINE CR1 1408 1575 -2 235 194 328 0 chr4 7753369 7753436 -194574911 - MIR SINE MIR -82 126 38 * 790 271 34 78 chr4 7754117 7754530 -194573817 + L2 LINE L2 2919 3313 0 317 237 10 10 chr4 7754835 7754932 -194573415 - MIR SINE MIR -127 135 39 403 250 46 9 chr4 7755091 7755199 -194573148 + MIR3 SINE MIR 83 194 -14 2242 128 7 0 chr4 7755790 7756096 -194572251 + AluSx SINE Alu 5 312 0 313 221 0 12 chr4 7756162 7756248 -194572099 + MIR SINE MIR 39 123 -139 188 228 123 0 chr4 7756616 7756673 -194571674 - MIR SINE MIR -147 115 52 263 317 0 10 chr4 7757056 7757160 -194571187 - L3 LINE CR1 -56 1521 1419 278 291 43 8 chr4 7757741 7757858 -194570489 - L1ME4a LINE L1 -3 6118 5998 2253 132 0 0 chr4 7757912 7758223 -194570124 - AluSx SINE Alu -1 311 1 264 286 36 0 chr4 7758337 7758421 -194569926 - L2 LINE L2 -65 3248 3162 246 240 0 0 chr4 7758423 7758473 -194569874 - L1ME4a LINE L1 -2062 5746 5697 395 347 62 12 chr4 7758726 7758968 -194569379 - L3 LINE CR1 -106 1471 1218 183 340 85 0 chr4 7759413 7759507 -194568840 - L2 LINE L2 -47 3266 3165 199 307 35 18 chr4 7759688 7759802 -194568545 - L2 LINE L2 -324 2989 2874 388 293 27 20 chr4 7760106 7760253 -194568094 - L2 LINE L2 0 3272 3125 471 308 73 89 chr4 7760338 7760887 -194567460 - L1M4 LINE L1 -2738 3408 2754 214 235 12 74 chr4 7761380 7761461 -194566886 - MIR SINE MIR -15 247 172 257 227 0 45 chr4 7761696 7761762 -194566585 + MIR SINE MIR 83 145 -63 182 335 152 11 chr4 7762264 7762455 -194565892 - L2 LINE L2 -28 3244 3027 1765 201 105 20 chr4 7763548 7763877 -194564470 - L1MB5 LINE L1 0 6174 5797 1653 138 76 11 chr4 7763877 7764152 -194564195 - AluJb SINE Alu -19 293 1 1765 201 105 20 chr4 7764152 7764261 -194564086 - L1MB5 LINE L1 -377 5797 5699 532 208 88 0 chr4 7764262 7764387 -194563960 + MIR SINE MIR 102 237 -25 251 285 184 44 chr4 7764519 7764677 -194563670 - MIR SINE MIR -75 187 8 316 199 8 145 chr4 7764738 7764869 -194563478 + L1ME4a LINE L1 6008 6120 -1 323 260 17 81 chr4 7764967 7765140 -194563207 + L1ME4a LINE L1 5959 6120 -1 213 150 33 33 chr4 7765430 7765490 -194562857 + (CCCTG)n Simple_repeat Simple_repeat 1 60 0 251 323 71 0 chr4 7765643 7765742 -194562605 + L2 LINE L2 3205 3310 -3 * 378 307 0 0 chr4 7765738 7765839 -194562508 - MIR SINE MIR -99 163 63 392 239 0 0 chr4 7765955 7766047 -194562300 + MIR SINE MIR 28 119 -143 259 255 78 10 chr4 7767079 7767181 -194561166 + MIR SINE MIR 114 222 -40 2527 65 0 0 chr4 7767266 7767560 -194560787 + AluY SINE Alu 1 294 -17 195 265 235 0 chr4 7767594 7767692 -194560655 + MIR SINE MIR 20 140 -68 226 310 0 14 chr4 7768519 7768593 -194559754 + MIR SINE MIR 71 144 -64 235 349 0 8 chr4 7769024 7769150 -194559197 + GA-rich Low_complexity Low_complexity 1 125 0 326 270 135 0 chr4 7770172 7770283 -194558064 + LTR16C LTR ERVL 84 209 -282 208 123 15 46 chr4 7770473 7770538 -194557809 + T-rich Low_complexity Low_complexity 3 65 0 2445 46 0 20 chr4 7770552 7770858 -194557489 + AluY SINE Alu 1 300 -11 1738 146 0 7 chr4 7770860 7771134 -194557213 - AluSx SINE Alu -40 272 1 1988 184 38 25 chr4 7771143 7771359 -194556988 - L1MB7 LINE L1 0 6184 5972 2429 58 0 13 chr4 7771359 7771670 -194556677 - AluY SINE Alu -4 307 1 1988 184 38 25 chr4 7771670 7771802 -194556545 - L1MB7 LINE L1 -212 5972 5826 2058 120 10 0 chr4 7771802 7772111 -194556236 - AluSx SINE Alu 0 312 1 1988 184 38 25 chr4 7772111 7772206 -194556141 - L1MB7 LINE L1 -358 5826 5734 763 197 8 0 chr4 7772353 7772485 -194555862 + FLAM_A SINE Alu 1 133 0 1606 176 12 56 chr4 7772511 7772835 -194555512 + AluJb SINE Alu 3 312 0 545 172 15 15 chr4 7772838 7772972 -194555375 + GA-rich Low_complexity Low_complexity 2 135 0 2852 84 7 5 chr4 7773080 7773506 -194554841 + L1P5 LINE L1 5365 5791 -360 326 371 0 0 chr4 7773528 7773617 -194554730 + L1MC4 LINE L1 6615 6703 -1339 2517 80 14 11 chr4 7773620 7773981 -194554366 + L1PB1 LINE L1 5782 6143 -8 34 42 0 0 chr4 7774012 7774060 -194554287 + AT_rich Low_complexity Low_complexity 1 48 0 1875 113 0 0 chr4 7774727 7774984 -194553363 - AluSq SINE Alu -56 257 1 1722 149 13 17 chr4 7774988 7775289 -194553058 - AluJb SINE Alu -12 300 1 1326 220 48 43 chr4 7775939 7776458 -194551889 + MER51C LTR ERV1 3 564 -76 1815 108 0 0 chr4 7776800 7777049 -194551298 - AluSg SINE Alu -61 249 1 741 205 13 0 chr4 7777050 7777201 -194551146 + L1MB5 LINE L1 6021 6173 -1 1391 136 45 0 chr4 7777201 7777439 -194550908 + L1MB3 LINE L1 5926 6178 -5 397 115 0 0 chr4 7777527 7777588 -194550759 + L1MC2 LINE L1 6271 6331 -13 192 118 0 0 chr4 7777684 7777693 -194550654 + (TTAGGG)n Simple_repeat Simple_repeat 2 10 -25 7543 43 0 2 chr4 7777693 7779188 -194549159 + L1PA5 LINE L1 4662 6154 0 192 118 0 0 chr4 7779188 7779212 -194549135 + (TTAGGG)n Simple_repeat Simple_repeat 9 35 0 1694 175 83 6 chr4 7779305 7779653 -194548694 - MLT1E2 LTR MaLR -6 620 246 21 0 0 0 chr4 7779660 7779681 -194548666 + GC_rich Low_complexity Low_complexity 1 21 0 766 184 20 169 chr4 7779711 7780054 -194548293 - MLT1E2 LTR MaLR -334 292 1 2164 100 0 3 chr4 7780451 7780752 -194547595 - AluSx SINE Alu -12 300 1 1633 86 16 19 chr4 7781447 7781703 -194546644 - MER51C LTR ERV1 -1 639 385 447 216 8 36 chr4 7782604 7782979 -194545368 + (CA)n Simple_repeat Simple_repeat 1 364 0 233 254 0 0 chr4 7783000 7783067 -194545280 + (CA)n Simple_repeat Simple_repeat 2 68 0 385 239 16 6 chr4 7783095 7783416 -194544931 + (CA)n Simple_repeat Simple_repeat 1 324 0 198 302 47 0 chr4 7783590 7783676 -194544671 + L2 LINE L2 3182 3271 -1 201 260 30 50 chr4 7783772 7783872 -194544475 + G-rich Low_complexity Low_complexity 2 99 0 217 261 31 0 chr4 7784286 7784351 -194543996 + MIR SINE MIR 113 179 -83 251 119 0 0 chr4 7784604 7784646 -194543701 + L2 LINE L2 3012 3053 -219 228 275 103 101 chr4 7785045 7785646 -194542701 + L1MC/D LINE L1 5260 5864 -1944 2250 97 0 0 chr4 7785646 7785945 -194542402 + AluSx SINE Alu 1 299 -13 228 275 103 101 chr4 7785945 7785975 -194542372 + L1MC/D LINE L1 5864 5892 -1916 1907 145 86 17 chr4 7786203 7786270 -194542077 + L1MB3 LINE L1 5798 5859 -324 2376 82 0 0 chr4 7786270 7786575 -194541772 - AluY SINE Alu -6 305 1 1907 145 86 17 chr4 7786575 7786866 -194541481 + L1MB3 LINE L1 5859 6181 -2 242 311 17 3 chr4 7786877 7787002 -194541345 - MIR SINE MIR -50 212 48 221 232 195 0 chr4 7787559 7787641 -194540706 + L2 LINE L2 3199 3296 -17 2145 186 23 49 chr4 7787707 7788180 -194540167 + MLT1C LTR MaLR 7 467 0 225 328 64 8 chr4 7788502 7788627 -194539720 - MIR SINE MIR -80 182 51 3941 157 18 17 chr4 7788778 7789435 -194538912 - L1MB7 LINE L1 -7 6177 5520 868 303 50 54 chr4 7789602 7790025 -194538322 - MLT1J LTR MaLR -78 433 13 234 0 0 0 chr4 7790103 7790129 -194538218 + (TTAA)n Simple_repeat Simple_repeat 4 29 0 1890 127 58 0 chr4 7790264 7790555 -194537792 - AluSx SINE Alu -4 308 1 188 300 57 43 chr4 7790662 7790732 -194537615 - L2 LINE L2 -1 3312 3242 222 226 19 0 chr4 7790869 7790922 -194537425 - MIR SINE MIR -76 132 79 271 248 88 29 chr4 7791098 7791138 -194537209 + L1MC/D LINE L1 3313 3349 -2797 2023 104 6 31 chr4 7791138 7791456 -194536891 + AluSx SINE Alu 1 310 -2 271 248 88 29 chr4 7791456 7791552 -194536795 + L1MC/D LINE L1 3349 3457 -2689 524 313 60 19 chr4 7791831 7792099 -194536248 + LTR16A LTR ERVL 165 443 -7 1078 93 0 0 chr4 7792166 7792305 -194536042 + AluSg SINE Alu 1 139 -171 242 276 41 20 chr4 7792863 7792961 -194535386 + MLT1J LTR MaLR 322 421 -90 1864 143 20 0 chr4 7793068 7793362 -194534985 - AluJo SINE Alu -12 300 1 21 0 0 0 chr4 7793676 7793697 -194534650 + AT_rich Low_complexity Low_complexity 1 21 0 276 275 46 37 chr4 7794281 7794390 -194533957 + MIR SINE MIR 33 142 -66 267 367 7 43 chr4 7794421 7794560 -194533787 + MIR SINE MIR 55 188 -74 519 279 7 15 chr4 7795136 7795272 -194533075 - MIR SINE MIR -62 200 66 221 309 0 0 chr4 7795621 7795676 -194532671 + GA-rich Low_complexity Low_complexity 3 57 0 389 308 89 16 chr4 7795839 7796086 -194532261 - L1MC4 LINE L1 -71 7971 7707 547 270 20 0 chr4 7796437 7796589 -194531758 + L1MC/D LINE L1 4890 5044 -1102 400 174 0 83 chr4 7796592 7796661 -194531686 + L1MC/D LINE L1 5372 5431 -928 2115 109 0 0 chr4 7796661 7796975 -194531372 + AluSx SINE Alu 1 314 0 400 174 0 83 chr4 7796975 7797013 -194531334 + L1MC/D LINE L1 5431 5471 -888 260 307 40 10 chr4 7797129 7797230 -194531117 + L1MC/D LINE L1 5475 5578 -766 426 321 114 25 chr4 7797241 7797615 -194530732 - LTR16A LTR ERVL -28 436 13 226 341 47 0 chr4 7797717 7797802 -194530545 + L2 LINE L2 3180 3268 -4 438 259 40 26 chr4 7797837 7798088 -194530259 + L2 LINE L2 2580 2944 -328 356 212 189 15 chr4 7798102 7798234 -194530113 - L2 LINE L2 -241 3072 2918 199 277 158 71 chr4 7798361 7798545 -194529802 + MIR SINE MIR 63 262 0 298 327 9 9 chr4 7798818 7798925 -194529422 + MIR SINE MIR 46 152 -56 232 293 51 32 chr4 7799085 7799242 -194529105 + L2 LINE L2 2818 2977 -336 1507 176 7 46 chr4 7799364 7799671 -194528676 - AluJo SINE Alu -17 295 1 474 344 54 0 chr4 7799759 7799983 -194528364 + MIR SINE MIR 8 243 -19 212 260 110 0 chr4 7800003 7800076 -194528271 + L2 LINE L2 3232 3312 -1 1761 271 34 6 chr4 7800188 7800694 -194527653 + MLT1H1 LTR MaLR 33 552 -3 2574 120 10 135 chr4 7800934 7801511 -194526836 - MLT1D LTR MaLR 0 505 1 183 348 174 0 chr4 7801511 7801626 -194526721 - MIR SINE MIR -81 181 47 411 283 121 53 chr4 7801784 7802106 -194526241 - LTR33 LTR ERVL -177 344 1 411 340 80 4 chr4 7802543 7802781 -194525566 - ERVL LTR ERVL -681 5083 4828 2053 205 34 18 chr4 7802786 7803227 -194525120 + MLT1C LTR MaLR 1 448 -19 400 187 27 0 chr4 7803227 7803302 -194525045 - MLT1A1 LTR MaLR -1 364 288 2240 119 0 0 chr4 7803303 7803732 -194524615 + AluSx SINE Alu 1 429 0 1041 176 129 24 chr4 7803732 7804006 -194524341 - MLT1A1 LTR MaLR -55 341 6 341 232 24 0 chr4 7804047 7804129 -194524218 - MER94 DNA DNA -50 84 1 1171 323 62 13 chr4 7804524 7804839 -194523508 - ERVL LTR ERVL -1346 4308 3955 1918 202 146 17 chr4 7804839 7805299 -194523048 + MLT2B1 LTR ERVL 2 520 0 1171 323 62 13 chr4 7805299 7805519 -194522828 - ERVL LTR ERVL -1699 3955 3747 425 307 84 18 chr4 7805560 7805785 -194522562 - LTR33 LTR ERVL -272 249 10 192 77 0 0 chr4 7806106 7806132 -194522215 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 302 271 138 9 chr4 7806192 7806402 -194521945 - L2 LINE L2 -245 3068 2832 330 267 145 35 chr4 7807896 7808105 -194520242 + MIR SINE MIR 38 256 -6 329 0 0 24 chr4 7808115 7808157 -194520190 + (CA)n Simple_repeat Simple_repeat 2 42 0 1766 179 82 9 chr4 7808295 7808635 -194519712 + MLT1A1 LTR MaLR 1 365 0 505 297 88 0 chr4 7809174 7809356 -194518991 + MIR SINE MIR 65 262 0 1930 243 118 21 chr4 7809400 7810184 -194518163 + MER45C DNA AcHobo 6 953 0 255 250 0 0 chr4 7810344 7810460 -194517887 + (CA)n Simple_repeat Simple_repeat 2 117 0 496 129 24 0 chr4 7811087 7811172 -194517175 + MIR SINE MIR 64 150 -112 460 276 35 52 chr4 7811386 7811560 -194516787 - MIR SINE MIR -70 192 22 225 221 13 39 chr4 7812189 7812266 -194516081 + (CGGGG)n Simple_repeat Simple_repeat 4 78 0 205 243 19 39 chr4 7812342 7812445 -194515902 + G-rich Low_complexity Low_complexity 4 104 0 28 29 0 0 chr4 7812513 7812548 -194515799 + GC_rich Low_complexity Low_complexity 1 35 0 23 33 0 0 chr4 7812580 7812610 -194515737 + GC_rich Low_complexity Low_complexity 1 30 0 306 188 0 79 chr4 7812629 7812794 -194515553 + G-rich Low_complexity Low_complexity 6 157 0 220 241 149 0 chr4 7812895 7812982 -194515365 - MIR SINE MIR -115 147 48 231 235 59 0 chr4 7813950 7814018 -194514329 - MIR SINE MIR -74 188 117 235 267 59 20 chr4 7814412 7814513 -194513834 - L2 LINE L2 -257 3015 2911 1582 254 67 22 chr4 7815690 7816283 -194512064 + L2 LINE L2 2458 3082 -231 402 75 0 0 chr4 7816326 7816379 -194511968 + MSTB LTR MaLR 1 53 -373 2198 98 0 3 chr4 7816391 7816686 -194511661 + AluSq SINE Alu 13 306 -7 800 320 57 30 chr4 7816716 7817154 -194511193 + ERVL LTR ERVL 470 919 -4077 1206 209 54 26 chr4 7817195 7817641 -194510706 + MLT1B LTR MaLR 1 390 0 507 319 165 19 chr4 7817715 7818079 -194510268 + ERVL LTR ERVL 1124 1540 -3456 1957 124 16 22 chr4 7818084 7818371 -194509976 + AluSq SINE Alu 1 287 -26 1029 96 17 17 chr4 7818371 7818549 -194509798 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 1957 124 16 22 chr4 7818549 7818575 -194509772 + AluSq SINE Alu 287 312 -1 588 136 32 26 chr4 7818575 7818729 -194509618 + GA-rich Low_complexity Low_complexity 1 155 0 903 110 24 12 chr4 7818768 7818932 -194509415 + GA-rich Low_complexity Low_complexity 1 166 0 935 275 42 0 chr4 7819005 7819245 -194509102 + ERVL LTR ERVL 1687 1936 -3060 854 222 76 28 chr4 7819247 7819550 -194508797 - MLT1F LTR MaLR -45 497 199 988 369 42 11 chr4 7819555 7820352 -194507995 + ERVL LTR ERVL 4509 5369 -395 719 209 83 109 chr4 7820494 7820694 -194507653 - MLT1G LTR MaLR -286 309 105 664 175 108 0 chr4 7820694 7820814 -194507533 + AluJo/FLAM SINE Alu 1 133 -169 1473 209 0 43 chr4 7820817 7821142 -194507205 + AluJo SINE Alu 1 311 -1 719 209 83 109 chr4 7821142 7821215 -194507132 - MLT1G LTR MaLR -492 103 72 5711 105 47 16 chr4 7821215 7822090 -194506257 + MER4D LTR ERV1 1 902 -1 719 209 83 109 chr4 7822090 7822159 -194506188 - MLT1G LTR MaLR -523 72 3 708 258 163 18 chr4 7822184 7822521 -194505826 - MLT1J2 LTR MaLR -45 405 20 213 200 20 0 chr4 7822937 7822987 -194505360 - MIR SINE MIR -138 124 74 297 279 70 0 chr4 7823000 7823086 -194505261 + MIR SINE MIR 59 150 -112 1802 155 3 7 chr4 7823088 7823384 -194504963 + AluJb SINE Alu 1 295 -17 28 29 0 0 chr4 7823854 7823889 -194504458 + GC_rich Low_complexity Low_complexity 1 35 0 322 298 0 66 chr4 7824176 7824297 -194504050 + MIR3 SINE MIR 42 154 -54 262 243 14 48 chr4 7824516 7824599 -194503748 + MIR SINE MIR 69 149 -59 341 243 180 9 chr4 7824617 7824728 -194503619 - MIR3 SINE MIR -65 143 14 324 203 158 40 chr4 7825641 7825818 -194502529 + MER102a DNA MER1_type 108 305 -25 330 261 61 17 chr4 7826275 7826390 -194501957 - MIR SINE MIR -110 152 33 539 225 9 9 chr4 7826532 7826643 -194501704 + L2 LINE L2 3201 3311 -2 260 270 36 22 chr4 7826744 7826881 -194501466 + L1MC4 LINE L1 7903 8041 -1 219 337 31 31 chr4 7826901 7826999 -194501348 - L2 LINE L2 -13 3300 3203 802 281 54 4 chr4 7827394 7827636 -194500711 + MIR SINE MIR 3 256 -6 1251 116 0 0 chr4 7827679 7827911 -194500436 + (CCA)n Simple_repeat Simple_repeat 1 232 0 1163 87 0 22 chr4 7827923 7828107 -194500240 + (CCA)n Simple_repeat Simple_repeat 1 180 0 699 164 0 48 chr4 7828123 7828312 -194500035 + (CCA)n Simple_repeat Simple_repeat 1 180 0 429 226 0 32 chr4 7828310 7828496 -194499851 + (CACCAT)n Simple_repeat Simple_repeat 1 180 0 * 310 304 105 49 chr4 7828548 7828755 -194499592 - MIR3 SINE MIR -41 221 12 214 315 99 43 chr4 7829781 7829943 -194498404 - MIR SINE MIR -44 218 48 421 307 67 32 chr4 7829993 7830182 -194498165 - MIR SINE MIR -43 219 20 2012 124 0 3 chr4 7831046 7831367 -194496980 - AluSx SINE Alu 0 320 1 319 119 34 0 chr4 7831415 7831474 -194496873 - FLAM_A SINE Alu -9 124 64 629 236 65 91 chr4 7831626 7832024 -194496323 - MLT1J2 LTR MaLR 0 450 63 543 246 5 64 chr4 7832024 7832211 -194496136 - MLT1J LTR MaLR -333 178 3 2303 207 105 18 chr4 7832272 7832939 -194495408 - MER50 LTR ERV1 0 734 10 277 250 52 86 chr4 7833010 7833126 -194495221 - MLT1L LTR MaLR -164 392 236 802 218 12 1 chr4 7833155 7833480 -194494867 - MER93b LTR ERV1 -8 365 1 240 316 0 13 chr4 7833507 7833583 -194494764 - MLT1L LTR MaLR -421 194 120 213 360 48 20 chr4 7834039 7834186 -194494161 + MIR SINE MIR 80 230 -32 1085 238 199 24 chr4 7834301 7834768 -194493579 - MLT1F1 LTR MaLR 0 567 19 1965 123 0 39 chr4 7834768 7835077 -194493270 - AluJo SINE Alu -4 308 12 1734 199 36 3 chr4 7835224 7835560 -194492787 + L1MB3 LINE L1 5834 6180 -3 205 191 0 0 chr4 7836417 7836459 -194491888 + T-rich Low_complexity Low_complexity 1 42 0 2117 118 0 16 chr4 7836472 7836787 -194491560 - AluSx SINE Alu -2 310 1 1423 177 3 79 chr4 7836840 7837168 -194491179 - MLT1B LTR MaLR -8 382 80 1922 110 45 0 chr4 7837170 7837460 -194490887 + AluSx SINE Alu 5 307 -5 255 314 25 17 chr4 7837472 7837590 -194490757 + L3 LINE CR1 1422 1540 -37 2077 127 3 7 chr4 7837961 7838268 -194490079 - AluSq SINE Alu -7 306 1 561 274 12 12 chr4 7838314 7838496 -194489851 - MIR SINE MIR -56 152 2 1651 162 45 10 chr4 7838525 7838815 -194489532 + AluJo SINE Alu 1 300 -12 1894 119 0 48 chr4 7838817 7839111 -194489236 + AluSx SINE Alu 1 280 -32 225 0 0 0 chr4 7839111 7839136 -194489211 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 1954 152 10 0 chr4 7839594 7839891 -194488456 + AluSx SINE Alu 1 300 -12 807 243 111 10 chr4 7839980 7840268 -194488079 - LTR53 LTR ERVL -7 512 196 561 292 70 11 chr4 7840575 7840760 -194487587 - MIR SINE MIR -21 241 46 187 262 16 16 chr4 7840807 7840868 -194487479 + MIR SINE MIR 31 91 -171 247 233 23 23 chr4 7840939 7841025 -194487322 - MIR SINE MIR -7 255 170 1620 147 56 0 chr4 7841074 7841340 -194487007 + AluJo SINE Alu 11 291 -21 996 180 0 14 chr4 7841467 7841678 -194486669 - MER96B DNA MER1_type? -206 211 4 192 282 117 29 chr4 7841770 7841873 -194486474 - MIR SINE MIR -131 131 20 252 242 242 25 chr4 7842317 7842474 -194485873 + MIR SINE MIR 44 234 -28 717 289 32 56 chr4 7842484 7842733 -194485614 - MIR SINE MIR -4 258 16 35 41 0 0 chr4 7842794 7842843 -194485504 + AT_rich Low_complexity Low_complexity 1 49 0 1707 85 51 0 chr4 7842888 7843123 -194485224 + AluSx SINE Alu 1 247 -65 228 282 190 14 chr4 7843708 7843850 -194484497 + L2 LINE L2 2918 3084 -188 237 300 187 27 chr4 7843964 7844114 -194484233 + MIR SINE MIR 75 248 -14 1557 208 103 3 chr4 7844114 7844474 -194483873 - MSTD LTR MaLR 0 396 1 260 363 112 28 chr4 7846311 7846490 -194481857 + MIR SINE MIR 44 237 -25 255 226 0 0 chr4 7846741 7846794 -194481553 + MIR SINE MIR 91 143 -119 256 299 11 20 chr4 7847158 7847281 -194481066 + MIR SINE MIR 29 152 -56 536 291 101 5 chr4 7847304 7847503 -194480844 - MIR SINE MIR 0 262 45 248 242 264 22 chr4 7847656 7847747 -194480600 + MER81 DNA DNA 1 113 -1 1597 145 3 35 chr4 7847819 7848102 -194480245 - AluJo SINE Alu -7 305 32 2487 43 3 7 chr4 7848108 7848411 -194479936 + AluY SINE Alu 1 302 -9 189 313 40 30 chr4 7848729 7848828 -194479519 - L2 LINE L2 -341 2972 2873 350 171 29 0 chr4 7848987 7849057 -194479290 + MIR SINE MIR 73 144 -118 277 258 45 0 chr4 7849562 7849628 -194478719 - MIR SINE MIR -90 172 104 732 272 60 44 chr4 7849628 7849949 -194478398 - MER21B LTR ERV1 -78 785 471 2040 117 17 3 chr4 7849949 7850248 -194478099 + AluSq SINE Alu 1 303 -10 732 272 60 44 chr4 7850248 7850401 -194477946 - MER21B LTR ERV1 -392 471 98 439 214 0 31 chr4 7850441 7850539 -194477808 - MER21B LTR ERV1 -768 95 1 1618 204 64 3 chr4 7850958 7851302 -194477045 - MLT1A1 LTR MaLR 0 365 1 1912 161 0 19 chr4 7851392 7851703 -194476644 - AluJb SINE Alu -7 305 1 205 313 31 0 chr4 7852023 7852087 -194476260 - L2 LINE L2 0 3272 3207 590 279 29 17 chr4 7852306 7852478 -194475869 - L2 LINE L2 -4 3309 3136 195 311 73 0 chr4 7852801 7852952 -194475395 - L2 LINE L2 -299 2973 2812 220 266 49 152 chr4 7853486 7853670 -194474677 + L3 LINE CR1 1177 1341 -236 190 286 0 0 chr4 7854384 7854433 -194473914 - MIR3 SINE MIR -21 187 139 233 256 0 0 chr4 7854435 7854478 -194473869 + (CCCA)n Simple_repeat Simple_repeat 2 44 0 641 235 6 0 chr4 7854482 7854661 -194473686 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 242 221 15 29 chr4 7854849 7854917 -194473430 + GA-rich Low_complexity Low_complexity 3 69 0 4405 161 48 18 chr4 7855648 7855917 -194472430 - L1MB7 LINE L1 -9 6175 5916 1840 149 20 10 chr4 7855917 7855932 -194472415 - AluJb SINE Alu -14 298 285 189 0 0 0 chr4 7855932 7855953 -194472394 + (ATTG)n Simple_repeat Simple_repeat 4 24 0 1840 149 20 10 chr4 7855953 7856232 -194472115 - AluJb SINE Alu -27 285 1 4405 161 48 18 chr4 7856232 7856927 -194471420 - L1MB7 LINE L1 -268 5916 5183 387 335 62 6 chr4 7857260 7857436 -194470911 + MIR SINE MIR 22 207 -55 2306 94 0 0 chr4 7858885 7859184 -194469163 - AluSx SINE Alu -13 299 1 344 260 199 22 chr4 7859225 7859406 -194468941 + MIR SINE MIR 13 225 -37 212 284 25 25 chr4 7859429 7859510 -194468837 - MIR SINE MIR -181 81 1 474 229 76 0 chr4 7860111 7860229 -194468118 - MIR3 SINE MIR -24 184 58 1092 129 0 45 chr4 7860364 7860542 -194467805 + AluSg/x SINE Alu 134 303 -9 287 279 93 0 chr4 7860898 7860984 -194467363 - L2 LINE L2 0 3272 3179 420 271 104 70 chr4 7861511 7861894 -194466453 - MLT1K LTR MaLR -8 580 185 1569 171 59 14 chr4 7862034 7862321 -194466026 + AluJo SINE Alu 1 300 -12 318 233 0 0 chr4 7862321 7862381 -194465966 + G-rich Low_complexity Low_complexity 3 62 0 725 132 36 18 chr4 7862383 7862608 -194465739 + GA-rich Low_complexity Low_complexity 1 229 0 254 302 71 8 chr4 7862623 7862749 -194465598 + MIR3 SINE MIR 65 198 -10 281 326 109 0 chr4 7863171 7863318 -194465029 - MIR3 SINE MIR -21 187 25 214 341 35 0 chr4 7863520 7863605 -194464742 - L2 LINE L2 -51 3262 3175 187 374 36 0 chr4 7863730 7863813 -194464534 + L2 LINE L2 3137 3222 -50 884 168 0 31 chr4 7863845 7864006 -194464341 + AluJo SINE Alu 5 160 -152 1911 133 3 14 chr4 7864242 7864535 -194463812 + AluJo SINE Alu 1 290 -22 2140 122 0 0 chr4 7864535 7864831 -194463516 - AluSx SINE Alu -16 296 1 196 333 0 17 chr4 7864845 7864897 -194463450 - MER5B DNA MER1_type -52 126 76 244 328 117 14 chr4 7864897 7865038 -194463309 + MIR SINE MIR 3 156 -61 337 284 35 0 chr4 7865108 7865224 -194463123 - MLT1I LTR MaLR 0 409 290 388 185 33 0 chr4 7865309 7865401 -194462946 - MLT1I LTR MaLR -240 169 75 373 252 89 0 chr4 7865505 7865628 -194462719 + MIR SINE MIR 38 171 -91 2877 86 0 0 chr4 7865632 7865993 -194462354 - THE1B LTR MaLR -2 362 2 1608 175 3 30 chr4 7866400 7866575 -194461772 - AluSx SINE Alu -8 304 139 2233 96 0 7 chr4 7866575 7866877 -194461470 - AluSp SINE Alu -13 300 1 1608 175 3 30 chr4 7866877 7866998 -194461349 - AluSx SINE Alu -173 139 16 297 310 92 7 chr4 7867108 7867250 -194461097 + MIR SINE MIR 29 182 -80 199 292 46 46 chr4 7867715 7867780 -194460567 - MIR3 SINE MIR -33 175 111 243 346 98 0 chr4 7868391 7868544 -194459803 + MIR SINE MIR 59 226 -36 200 365 31 0 chr4 7869305 7869401 -194458946 + L2 LINE L2 3173 3271 -1 * 249 83 0 0 chr4 7869389 7869425 -194458922 + (GGGA)n Simple_repeat Simple_repeat 1 36 0 2134 197 90 12 chr4 7870638 7871159 -194457188 + L1MB7 LINE L1 5601 6165 -19 2062 128 10 0 chr4 7871167 7871463 -194456884 - AluSx SINE Alu -13 299 1 1879 101 59 21 chr4 7871803 7872090 -194456257 + AluSx SINE Alu 1 298 -14 1744 166 17 7 chr4 7872103 7872398 -194455949 + AluJo SINE Alu 1 298 -14 1852 177 0 3 chr4 7872643 7872948 -194455399 - AluJo SINE Alu -1 311 8 267 104 0 0 chr4 7872957 7873005 -194455342 + (T)n Simple_repeat Simple_repeat 1 48 0 946 134 8 0 chr4 7873106 7873240 -194455107 + AluSq/x SINE Alu 1 135 -177 2311 85 3 0 chr4 7873240 7873534 -194454813 + AluSp SINE Alu 1 295 -18 207 0 0 0 chr4 7873534 7873557 -194454790 + (CA)n Simple_repeat Simple_repeat 2 24 0 1092 176 40 9 chr4 7873565 7873593 -194454754 - MLT1A1 LTR MaLR -2 363 337 2098 50 46 8 chr4 7873593 7873853 -194454494 + AluY SINE Alu 27 296 -15 1092 176 40 9 chr4 7873853 7874051 -194454296 - MLT1A1 LTR MaLR -28 337 130 1088 184 16 5 chr4 7874253 7874443 -194453904 + AluJb SINE Alu 43 234 -78 1885 138 3 7 chr4 7874512 7874795 -194453552 + AluJb SINE Alu 31 312 0 631 139 9 0 chr4 7875110 7875218 -194453129 - MLT1A1 LTR MaLR -256 109 1 2472 64 3 3 chr4 7875273 7875568 -194452779 + AluSp SINE Alu 1 295 -18 831 282 55 51 chr4 7875706 7875997 -194452350 + L1ME3A LINE L1 5370 5658 -512 1985 117 0 87 chr4 7875997 7876152 -194452195 + AluSx SINE Alu 1 114 -198 2524 46 0 0 chr4 7876152 7876471 -194451876 + AluY SINE Alu 1 319 0 1985 117 0 87 chr4 7876471 7876647 -194451700 + AluSx SINE Alu 114 304 -8 831 282 55 51 chr4 7876647 7876784 -194451563 + L1ME3A LINE L1 5658 5803 -367 903 250 5 0 chr4 7876784 7876972 -194451375 + MER5A DNA MER1_type 1 189 0 831 282 55 51 chr4 7876972 7877031 -194451316 + L1ME3A LINE L1 5803 5860 -310 293 19 74 0 chr4 7877048 7877102 -194451245 + (TAGA)n Simple_repeat Simple_repeat 3 60 0 297 195 65 0 chr4 7877104 7877181 -194451166 + L1ME3A LINE L1 5869 5950 -220 1993 152 16 10 chr4 7877250 7877560 -194450787 + AluJb SINE Alu 1 312 0 532 131 9 9 chr4 7877562 7877669 -194450678 + (GGGAA)n Simple_repeat Simple_repeat 4 110 0 23 0 0 0 chr4 7877937 7877960 -194450387 + AT_rich Low_complexity Low_complexity 1 23 0 246 328 76 0 chr4 7878102 7878221 -194450126 + MLT1J LTR MaLR 1 128 -383 656 233 43 67 chr4 7878280 7878493 -194449854 + MLT1H1 LTR MaLR 309 517 -38 1851 164 3 7 chr4 7878493 7878786 -194449561 + AluJb SINE Alu 1 292 -20 656 233 43 67 chr4 7878786 7878825 -194449522 + MLT1H1 LTR MaLR 517 555 0 2536 73 0 13 chr4 7878993 7879307 -194449040 - AluY SINE Alu -1 310 1 655 269 0 0 chr4 7879838 7879994 -194448353 - MLT1A2 LTR MaLR -4 370 215 629 156 57 8 chr4 7880037 7880159 -194448188 + LTR31 LTR ERV1 1 128 -491 886 235 0 0 chr4 7880159 7880325 -194448022 - FRAM SINE Alu -10 166 1 3434 123 6 0 chr4 7880325 7880830 -194447517 + LTR31 LTR ERV1 112 619 0 926 233 5 9 chr4 7880830 7881045 -194447302 - MLT1A2 LTR MaLR -160 214 1 2143 157 89 33 chr4 7881134 7881352 -194446995 - MER66B LTR ERV1 -7 479 275 2174 122 0 3 chr4 7881352 7881646 -194446701 - AluSx SINE Alu -19 293 1 2143 157 89 33 chr4 7881646 7881878 -194446469 - MER66B LTR ERV1 -211 275 4 514 226 77 70 chr4 7882628 7882720 -194445627 + L1M4 LINE L1 2789 2879 -3267 2242 101 26 13 chr4 7882720 7883028 -194445319 - AluSq SINE Alu -1 312 1 514 226 77 70 chr4 7883028 7883297 -194445050 + L1M4 LINE L1 2879 3156 -2990 2147 132 7 0 chr4 7883297 7883593 -194444754 + AluSx SINE Alu 1 298 -14 514 226 77 70 chr4 7883593 7883633 -194444714 + L1M4 LINE L1 3156 3194 -2952 4642 161 36 7 chr4 7883817 7884677 -194443670 - L1MC1 LINE L1 -20 6313 5429 1730 86 49 34 chr4 7884737 7884781 -194443566 - MER4A LTR ERV1 0 664 622 13320 27 1 0 chr4 7884781 7887108 -194441239 + L1PA3 LINE L1 3828 6155 0 1730 86 49 34 chr4 7887108 7887624 -194440723 - MER4A LTR ERV1 -42 622 1 886 186 6 6 chr4 7888168 7888329 -194440018 + FRAM SINE Alu 1 161 -5 2594 71 0 0 chr4 7888355 7888666 -194439681 + AluY SINE Alu 1 311 0 1987 132 20 0 chr4 7888781 7889084 -194439263 - AluSx SINE Alu -1 311 3 1101 294 68 17 chr4 7891793 7892205 -194436142 + LTR16A LTR ERVL 8 440 -10 530 149 76 13 chr4 7892489 7892606 -194435741 - L1MD3 LINE L1 -125 7870 7694 1238 159 50 50 chr4 7892766 7893024 -194435323 - AluJb SINE Alu -13 299 42 641 212 0 8 chr4 7893052 7893184 -194435163 - FLAM_C SINE Alu -2 131 1 388 275 134 23 chr4 7893190 7893361 -194434986 - L1MC4a LINE L1 -1865 5943 5754 1868 130 0 4 chr4 7893592 7893882 -194434465 - AluSx SINE Alu 0 310 22 1272 255 101 13 chr4 7893935 7894311 -194434036 + MLT1I LTR MaLR 1 409 0 2440 67 100 0 chr4 7894671 7895012 -194433335 + THE1C LTR MaLR 1 375 0 193 357 88 39 chr4 7895033 7895316 -194433031 + L2 LINE L2 157 453 -2861 263 333 157 12 chr4 7895327 7895576 -194432771 - L2 LINE L2 -2186 1128 844 230 258 212 61 chr4 7895679 7895811 -194432536 - MIR SINE MIR -10 252 101 249 352 101 48 chr4 7895823 7896261 -194432086 - L2 LINE L2 -2493 821 361 268 230 46 35 chr4 7896444 7896531 -194431816 - LTR16B LTR ERVL -342 122 35 2590 65 0 0 chr4 7896934 7897240 -194431107 - AluY SINE Alu -5 306 1 1678 153 11 28 chr4 7897253 7897535 -194430812 - AluJb SINE Alu 0 312 36 495 211 83 0 chr4 7897862 7897971 -194430376 - MLT1F1 LTR MaLR -437 130 13 2407 130 77 70 chr4 7898039 7898291 -194430056 + MER66B LTR ERV1 1 250 -236 2148 123 3 7 chr4 7898291 7898593 -194429754 - AluSg SINE Alu -7 303 3 2222 117 3 7 chr4 7898595 7898893 -194429454 - AluSx SINE Alu -14 298 2 2407 130 77 70 chr4 7898893 7899120 -194429227 + MER66B LTR ERV1 250 486 0 341 283 87 60 chr4 7899131 7899315 -194429032 + L1M4 LINE L1 4214 4402 -1744 1396 206 151 8 chr4 7899333 7899731 -194428616 - MLT1C LTR MaLR -7 460 6 21 0 0 0 chr4 7899759 7899780 -194428567 + AT_rich Low_complexity Low_complexity 1 21 0 1991 162 0 10 chr4 7899966 7900274 -194428073 + AluJo SINE Alu 1 305 -7 1349 178 5 0 chr4 7900284 7900497 -194427850 + AluJb SINE Alu 1 214 -98 361 299 82 25 chr4 7900525 7900769 -194427578 + L1M4 LINE L1 4641 4898 -1248 2061 86 61 4 chr4 7900793 7901073 -194427274 + AluSc SINE Alu 8 303 -6 333 295 67 35 chr4 7901095 7901349 -194426998 + L1M4 LINE L1 4904 5165 -981 556 136 31 117 chr4 7901349 7901511 -194426836 + L1MB5 LINE L1 5682 5829 -345 2153 129 7 0 chr4 7901512 7901822 -194426525 + AluSx SINE Alu 1 312 0 953 175 6 0 chr4 7901828 7901994 -194426353 + MLT1B LTR MaLR 224 390 0 366 150 87 0 chr4 7902745 7902872 -194425475 + (CAGG)n Simple_repeat Simple_repeat 3 140 0 229 234 0 0 chr4 7903146 7903193 -194425154 + MIR SINE MIR 216 262 0 370 279 31 8 chr4 7903218 7903347 -194425000 + MLT1G LTR MaLR 10 141 -449 1700 160 43 69 chr4 7903372 7903527 -194424820 + MLT1A1 LTR MaLR 1 159 -206 2304 98 0 7 chr4 7903527 7903834 -194424513 + AluSc SINE Alu 1 305 -4 1700 160 43 69 chr4 7903834 7904053 -194424294 + MLT1A1 LTR MaLR 159 365 0 296 133 0 0 chr4 7904796 7904841 -194423506 + Alu SINE Alu 1 45 -255 251 175 53 35 chr4 7904818 7904896 -194423451 + AluYb8 SINE Alu 243 321 0 * 483 225 42 7 chr4 7904909 7905051 -194423296 + L1ME2 LINE L1 5944 6090 -74 293 253 103 11 chr4 7905208 7905295 -194423052 + MIR SINE MIR 79 173 -89 1644 179 3 35 chr4 7905529 7905851 -194422496 + AluJb SINE Alu 1 313 0 703 272 42 89 chr4 7906383 7906743 -194421604 + MLT1J LTR MaLR 6 348 -163 402 289 177 15 chr4 7906833 7907093 -194421254 + L2 LINE L2 2359 2660 -654 266 221 116 0 chr4 7907512 7907598 -194420749 + L2 LINE L2 2903 2998 -274 900 184 6 12 chr4 7907606 7907769 -194420578 - AluJb SINE Alu -17 295 134 2637 43 0 0 chr4 7907769 7908070 -194420277 - AluY SINE Alu -10 301 1 1614 166 29 37 chr4 7908073 7908423 -194419924 - MLT2C1 LTR ERVL -50 347 1 323 255 170 0 chr4 7909447 7909541 -194418806 - MIR SINE MIR -65 143 34 817 211 0 87 chr4 7910511 7910719 -194417628 - MIR SINE MIR -40 222 33 387 259 45 9 chr4 7910891 7911003 -194417344 - MIR SINE MIR -64 144 29 226 286 14 0 chr4 7911309 7911379 -194416968 + MIR SINE MIR 46 116 -92 604 273 0 0 chr4 7911621 7911753 -194416594 + MIR SINE MIR 15 146 -116 206 339 0 0 chr4 7911892 7911951 -194416396 - MIR SINE MIR -92 116 58 370 328 110 39 chr4 7912270 7912605 -194415742 - L2 LINE L2 -24 3248 2890 695 138 8 8 chr4 7912732 7912855 -194415492 - MLT1D LTR MaLR -374 131 9 543 265 162 5 chr4 7913034 7913219 -194415128 + MIR SINE MIR 48 261 -1 578 299 95 4 chr4 7914116 7914347 -194414000 + MIR SINE MIR 8 259 -3 1916 157 3 19 chr4 7914466 7914779 -194413568 + AluJo SINE Alu 1 308 -4 2848 145 19 0 chr4 7914784 7915254 -194413093 + L1MB3 LINE L1 5700 6178 -5 1841 106 0 0 chr4 7915279 7915516 -194412831 + AluSx SINE Alu 1 237 -75 803 106 15 0 chr4 7915528 7915660 -194412687 + (GAAA)n Simple_repeat Simple_repeat 3 136 0 2213 77 20 13 chr4 7916685 7916984 -194411363 - AluY SINE Alu -10 301 1 290 350 36 0 chr4 7917132 7917269 -194411078 + MIR SINE MIR 64 205 -57 372 346 104 37 chr4 7917349 7917933 -194410414 + L2 LINE L2 2626 3255 -17 27 29 0 0 chr4 7917991 7918025 -194410322 + AT_rich Low_complexity Low_complexity 1 34 0 1915 136 7 27 chr4 7918054 7918349 -194409998 - AluJo SINE Alu -17 295 7 2463 73 7 0 chr4 7918648 7918949 -194409398 + AluSc SINE Alu 1 303 -6 1553 180 74 0 chr4 7919781 7920065 -194408282 - AluJb SINE Alu -7 305 1 315 286 60 0 chr4 7920497 7920581 -194407766 + MIR SINE MIR 172 260 -2 2459 80 0 3 chr4 7920706 7921018 -194407329 - AluY SINE Alu 0 311 1 2215 116 3 3 chr4 7921018 7921319 -194407028 - AluSg SINE Alu -9 301 1 2125 142 6 6 chr4 7921494 7921805 -194406542 + AluJb SINE Alu 1 311 -1 35 0 0 0 chr4 7922101 7922136 -194406211 + AT_rich Low_complexity Low_complexity 1 35 0 1866 148 41 7 chr4 7922140 7922431 -194405916 - AluJb SINE Alu -10 302 2 2199 112 10 3 chr4 7922663 7922966 -194405381 - AluSx SINE Alu -7 305 1 2153 148 0 10 chr4 7923063 7923374 -194404973 - AluJb SINE Alu -2 310 3 2359 112 45 25 chr4 7923567 7923924 -194404423 + THE1B LTR MaLR 1 364 0 314 240 116 29 chr4 7923964 7924111 -194404236 - L1ME LINE L1 -302 5819 5660 534 207 140 61 chr4 7924341 7924429 -194403918 + MER45A DNA AcHobo 1 81 -1500 2457 76 13 3 chr4 7924429 7924733 -194403614 - AluY SINE Alu -4 307 1 534 207 140 61 chr4 7924733 7924808 -194403539 + MER45A DNA AcHobo 81 177 -1 200 98 0 49 chr4 7924903 7924944 -194403403 + (TTAA)n Simple_repeat Simple_repeat 2 40 0 463 337 28 29 chr4 7925468 7925720 -194402627 - MIR SINE MIR -6 256 3 208 265 0 0 chr4 7925725 7925774 -194402573 - L2 LINE L2 0 3313 3265 853 276 86 19 chr4 7925774 7926188 -194402159 - LTR16B LTR ERVL -26 438 11 671 267 165 43 chr4 7926223 7926782 -194401565 - L2 LINE L2 -122 3191 2702 1116 161 79 57 chr4 7926782 7926814 -194401533 + MER33 DNA MER1_type 2 32 -2553 2236 95 0 7 chr4 7926814 7927119 -194401228 - AluY SINE Alu 0 303 1 1116 161 79 57 chr4 7927119 7927346 -194401001 + MER33 DNA MER1_type 32 273 -2312 1476 229 14 0 chr4 7927346 7927638 -194400709 - AluJo SINE Alu -16 296 1 1116 161 79 57 chr4 7927638 7927692 -194400655 + MER33 DNA MER1_type 273 324 0 671 267 165 43 chr4 7927692 7927821 -194400526 - L2 LINE L2 -611 2702 2028 2200 137 0 0 chr4 7927989 7928289 -194400058 - AluSx SINE Alu -12 300 1 2057 129 13 20 chr4 7929235 7929537 -194398810 + AluJo SINE Alu 1 300 -12 2339 68 44 0 chr4 7929537 7929833 -194398514 + AluYa5 SINE Alu 1 309 -2 1769 166 10 3 chr4 7930310 7930599 -194397748 - AluJo SINE Alu -21 291 1 1942 207 16 58 chr4 7930680 7931167 -194397180 - MLT1C LTR MaLR 0 467 1 2297 96 0 0 chr4 7931432 7931735 -194396612 - AluSc SINE Alu -1 308 6 2196 102 0 0 chr4 7931771 7932076 -194396271 - AluSx SINE Alu 0 334 30 2273 111 3 0 chr4 7932147 7932445 -194395902 + AluSx SINE Alu 1 299 -13 911 155 67 21 chr4 7932871 7933065 -194395282 + MER3 DNA MER1_type 7 209 0 1662 176 59 3 chr4 7933154 7933443 -194394904 + AluJo SINE Alu 1 305 -7 472 255 220 56 chr4 7933786 7934123 -194394224 - LTR16A LTR ERVL 0 450 59 1325 203 0 81 chr4 7934624 7934945 -194393402 + AluJo SINE Alu 2 296 -6 216 0 0 0 chr4 7934952 7934976 -194393371 + (TA)n Simple_repeat Simple_repeat 2 25 0 180 0 0 0 chr4 7936677 7936697 -194391650 + (TGAA)n Simple_repeat Simple_repeat 3 22 0 324 240 80 20 chr4 7936701 7936801 -194391546 - MER103 DNA DNA -46 120 15 329 193 44 104 chr4 7937620 7937755 -194390592 - L1M3c LINE L1 -4824 1317 1191 2443 82 0 13 chr4 7938208 7938514 -194389833 + AluY SINE Alu 9 310 -1 619 266 0 0 chr4 7938755 7938768 -194389579 - FLAM_A SINE Alu -174 128 116 492 62 0 0 chr4 7938768 7938832 -194389515 + (TCTA)n Simple_repeat Simple_repeat 1 64 0 619 266 0 0 chr4 7938832 7938946 -194389401 - FLAM_A SINE Alu -185 117 1 2196 125 20 0 chr4 7939539 7939836 -194388511 + AluSx SINE Alu 1 303 -9 186 368 11 23 chr4 7940337 7940424 -194387923 + L2 LINE L2 3187 3272 0 601 291 42 42 chr4 7941050 7941311 -194387036 + MLT1I LTR MaLR 79 339 -70 6268 166 8 26 chr4 7941311 7943131 -194385216 + L1MA4A LINE L1 4125 5912 -391 262 140 70 18 chr4 7943133 7943190 -194385157 + L1MA4A LINE L1 6208 6267 -36 1927 159 0 7 chr4 7943191 7943492 -194384855 - AluJb SINE Alu -13 299 1 225 0 0 0 chr4 7943495 7943520 -194384827 + (T)n Simple_repeat Simple_repeat 1 25 0 297 192 96 0 chr4 7943520 7943593 -194384754 + MLT1I LTR MaLR 323 402 -7 768 158 267 0 chr4 7943982 7944147 -194384200 + MER3 DNA MER1_type 1 209 0 230 269 90 27 chr4 7944172 7944395 -194383952 + L1ME4a LINE L1 5862 6098 -23 2583 62 3 0 chr4 7945099 7945408 -194382939 - AluY SINE Alu -1 310 1 1974 144 3 19 chr4 7947084 7947396 -194380951 + AluJb SINE Alu 1 307 -5 262 296 169 35 chr4 7947804 7947946 -194380401 - L2 LINE L2 -20 3293 3133 496 209 82 38 chr4 7948010 7948168 -194380179 + MIR SINE MIR 39 203 -59 267 267 61 38 chr4 7948249 7948380 -194379967 - LTR16A1 LTR ERVL -59 398 265 995 275 131 31 chr4 7948384 7948872 -194379475 + MLT1F LTR MaLR 1 537 -5 368 269 91 21 chr4 7948882 7949087 -194379260 - LTR16A LTR ERVL -197 253 3 2537 53 0 0 chr4 7949691 7949990 -194378357 + AluY SINE Alu 2 300 -11 526 298 5 2 chr4 7950170 7950913 -194377434 + (CA)n Simple_repeat Simple_repeat 1 745 0 2523 31 7 3 chr4 7950964 7951253 -194377094 - AluY SINE Alu -14 297 8 2517 45 0 0 chr4 7951827 7952117 -194376230 - AluY SINE Alu -10 301 12 2656 51 3 0 chr4 7952163 7952474 -194375873 - AluSp SINE Alu -1 312 1 1489 164 114 0 chr4 7952743 7953042 -194375305 + MLT1A1 LTR MaLR 19 351 -14 2242 84 0 0 chr4 7953183 7953456 -194374891 - AluSq SINE Alu -11 302 30 526 214 170 12 chr4 7953478 7953738 -194374609 - MLT1G1 LTR MaLR -285 270 5 1986 139 10 10 chr4 7954384 7954679 -194373668 + AluJb SINE Alu 1 295 -17 254 289 49 63 chr4 7954921 7955063 -194373284 - MLT1H LTR MaLR -3 546 407 189 256 156 22 chr4 7955279 7955369 -194372978 + L2 LINE L2 1453 1554 -1760 544 178 0 37 chr4 7955675 7955782 -194372565 - MER58C DNA MER1_type 0 215 113 719 178 94 42 chr4 7956375 7956389 -194371958 + MLT1E2 LTR MaLR 160 172 -454 1974 196 8 3 chr4 7956389 7956752 -194371595 - MLT1A1 LTR MaLR 0 365 1 719 178 94 42 chr4 7956752 7956928 -194371419 + MLT1E2 LTR MaLR 172 360 -266 329 298 70 0 chr4 7957023 7957137 -194371210 - L2 LINE L2 -7 3306 3185 209 219 146 37 chr4 7957208 7957290 -194371057 - L2 LINE L2 -60 3212 3122 1749 139 19 38 chr4 7957505 7957821 -194370526 - AluJb SINE Alu -2 310 1 3736 148 109 25 chr4 7957847 7958744 -194369603 + pTR5 LTR ERV1 743 2025 -413 276 250 31 0 chr4 7958744 7958840 -194369507 + LTR30 LTR ERV1 544 642 -80 1398 90 57 5 chr4 7958843 7959055 -194369292 + pTR5 LTR ERV1 172 394 -2044 214 289 0 0 chr4 7959213 7959265 -194369082 + (CG)n Simple_repeat Simple_repeat 2 53 0 24 0 0 0 chr4 7959579 7959603 -194368744 + GC_rich Low_complexity Low_complexity 1 24 0 869 168 0 0 chr4 7961754 7961885 -194366462 + FLAM_C SINE Alu 1 131 -2 199 278 19 0 chr4 7961902 7961956 -194366391 + MIR SINE MIR 203 257 -5 235 251 148 64 chr4 7961982 7962312 -194366035 - L2 LINE L2 -148 3165 2808 387 218 0 30 chr4 7962512 7962613 -194365734 + MER94 DNA DNA 16 113 -21 251 191 103 0 chr4 7963151 7963219 -194365128 - MIR SINE MIR -66 196 122 2895 22 0 0 chr4 7963348 7963666 -194364681 - AluYb8 SINE Alu 0 318 1 194 321 90 80 chr4 7964010 7964321 -194364026 - L2 LINE L2 0 3272 2959 2439 92 0 0 chr4 7964325 7964630 -194363717 + AluY SINE Alu 1 305 -6 249 351 192 0 chr4 7964884 7965035 -194363312 + MIR3 SINE MIR 16 195 -13 238 308 68 0 chr4 7965570 7965687 -194362660 - HAL1 LINE L1 -892 1615 1491 355 276 0 29 chr4 7965788 7965893 -194362454 + L2 LINE L2 2867 2968 -345 283 283 79 28 chr4 7965919 7966096 -194362251 - L2 LINE L2 -1508 1806 1621 232 315 47 63 chr4 7967326 7967453 -194360894 + MIR SINE MIR 66 190 -72 2320 89 23 3 chr4 7967521 7967824 -194360523 + AluSx SINE Alu 1 309 -3 304 303 7 49 chr4 7967866 7968008 -194360339 + L1M4 LINE L1 3841 3976 -2170 1508 115 161 31 chr4 7968951 7969211 -194359136 + AluJo SINE Alu 1 294 -18 2270 85 10 10 chr4 7969225 7969520 -194358827 - AluSx SINE Alu -17 295 1 180 0 0 0 chr4 7970420 7970440 -194357907 + (TG)n Simple_repeat Simple_repeat 1 20 0 1636 180 109 3 chr4 7970487 7970853 -194357494 - MLT2C2 LTR ERVL -55 409 5 372 186 202 23 chr4 7970891 7971020 -194357327 - MIR SINE MIR -78 184 33 328 294 37 28 chr4 7971516 7971625 -194356722 - MIR3 SINE MIR -38 170 61 911 103 0 0 chr4 7971821 7971938 -194356409 - FLAM_C SINE Alu -18 125 9 1715 183 40 71 chr4 7972711 7973133 -194355214 - LTR2 LTR ERV1 0 449 41 440 306 36 10 chr4 7973245 7973441 -194354906 + L2 LINE L2 2976 3176 -96 1149 240 120 8 chr4 7973817 7974217 -194354130 + MLT1C LTR MaLR 22 466 -1 227 325 48 0 chr4 7974727 7974810 -194353537 + MIR3 SINE MIR 92 178 -30 2336 80 11 0 chr4 7976018 7976305 -194352042 - AluSx SINE Alu -11 301 12 1016 167 0 0 chr4 7976635 7976797 -194351550 + FRAM SINE Alu 1 160 -16 2257 109 3 0 chr4 7976800 7977113 -194351234 + AluSx SINE Alu 1 314 0 1259 115 82 0 chr4 7977132 7977315 -194351032 + AluSg/x SINE Alu 81 278 -32 216 0 0 0 chr4 7977316 7977340 -194351007 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 261 163 0 0 chr4 7977343 7977392 -194350955 + (TATATG)n Simple_repeat Simple_repeat 6 54 0 349 216 53 0 chr4 7977393 7977495 -194350852 + L1MC4 LINE L1 1996 6980 -1342 1709 206 73 23 chr4 7978118 7978681 -194349666 + MER39B LTR ERV1 1 649 -4 280 306 0 24 chr4 7980041 7980126 -194348221 + CT-rich Low_complexity Low_complexity 5 87 0 2158 141 0 3 chr4 7980258 7980571 -194347776 - AluJb SINE Alu 0 312 1 255 304 22 11 chr4 7981637 7981729 -194346618 + MIR SINE MIR 47 139 -69 2252 99 0 7 chr4 7982848 7983141 -194345206 - AluSq SINE Alu -17 296 6 2544 70 0 0 chr4 7983158 7983460 -194344887 - AluY SINE Alu -7 304 3 436 221 0 0 chr4 7983979 7984065 -194344282 - AluJ/FRAM SINE Alu -9 303 218 1922 114 0 67 chr4 7984065 7984381 -194343966 - AluY SINE Alu -16 295 1 836 160 8 0 chr4 7984382 7984507 -194343840 - AluJo/FLAM SINE Alu -186 126 1 304 263 61 26 chr4 7984599 7984713 -194343634 + LTR67 LTR ERVL 109 226 -331 1973 161 0 13 chr4 7985258 7985574 -194342773 - AluJo SINE Alu 0 312 1 329 247 43 99 chr4 7985577 7985739 -194342608 - L1ME LINE L1 -294 5827 5675 770 176 15 0 chr4 7985748 7985879 -194342468 - FLAM_C SINE Alu 0 133 1 1773 184 48 39 chr4 7985957 7986392 -194341955 - L1MB2 LINE L1 -2 6169 5731 2365 68 0 0 chr4 7986395 7986733 -194341614 - AluSx SINE Alu 0 312 1 1982 115 10 20 chr4 7987021 7987326 -194341021 - AluSx SINE Alu -10 302 1 502 241 97 14 chr4 7987392 7987586 -194340761 - L1MC4 LINE L1 -132 7910 7697 2282 108 3 0 chr4 7987586 7987882 -194340465 - AluSx SINE Alu -15 297 1 502 241 97 14 chr4 7987882 7987894 -194340453 - L1MC4 LINE L1 -345 7697 7687 304 182 15 0 chr4 7987887 7987953 -194340394 - L1MC4a LINE L1 -584 7224 7158 * 2041 237 15 46 chr4 7987932 7988539 -194339808 - L1MC4 LINE L1 -937 7105 6518 360 59 0 0 chr4 7988895 7988946 -194339401 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 3173 202 36 11 chr4 7989144 7989779 -194338568 - MER82 DNA MER2_type -2 651 1 549 231 30 30 chr4 7990160 7990329 -194338018 + L2 LINE L2 3144 3312 -1 337 280 272 29 chr4 7990358 7990601 -194337746 - L2 LINE L2 -571 2743 2442 859 284 153 6 chr4 7990671 7990991 -194337356 - L2 LINE L2 0 3313 2947 313 307 64 42 chr4 7991037 7991301 -194337046 + HsTC2 DNA Tc2 496 765 -1133 263 281 37 0 chr4 7991524 7991606 -194336741 + (TATG)n Simple_repeat Simple_repeat 3 87 0 380 301 81 43 chr4 7991684 7991870 -194336477 + MLT1I LTR MaLR 217 409 0 257 190 76 38 chr4 7995477 7995556 -194332791 - MIR SINE MIR -21 241 160 261 350 87 0 chr4 7995871 7995974 -194332373 + L2 LINE L2 3144 3255 -17 2009 222 38 12 chr4 7996248 7996609 -194331738 + L1ME LINE L1 5167 5552 -610 1315 193 60 83 chr4 7996609 7997008 -194331339 - MLT1B LTR MaLR 0 390 1 2009 222 38 12 chr4 7997008 7997241 -194331106 + L1ME LINE L1 5552 5778 -384 261 206 82 27 chr4 7997262 7997326 -194331021 - MLT1F1 LTR MaLR -4 563 496 1725 151 20 87 chr4 7997326 7997539 -194330808 - MLT1A1 LTR MaLR 0 365 139 2415 96 0 0 chr4 7997539 7997840 -194330507 - AluSq SINE Alu -12 301 1 1725 151 20 87 chr4 7997840 7997852 -194330495 - MLT1A1 LTR MaLR -226 139 128 1597 172 34 30 chr4 7997852 7998149 -194330198 - AluJo SINE Alu -14 298 1 1725 151 20 87 chr4 7998149 7998243 -194330104 - MLT1A1 LTR MaLR -237 128 73 2818 118 34 0 chr4 7998243 7998657 -194329690 - MSTA LTR MaLR 0 428 1 1725 151 20 87 chr4 7998657 7998726 -194329621 - MLT1A1 LTR MaLR -292 73 1 930 218 102 9 chr4 7998739 7998964 -194329383 - MLT1F1 LTR MaLR -121 446 201 1641 112 0 92 chr4 7998965 7999269 -194329078 - MER4A LTR ERV1 0 664 389 186 43 0 0 chr4 7999269 7999292 -194329055 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 2081 116 14 0 chr4 7999298 7999602 -194328745 - AluSx SINE Alu 0 310 3 272 180 20 0 chr4 7999629 7999679 -194328668 - MER4A LTR ERV1 -351 313 263 574 184 0 0 chr4 7999681 7999779 -194328568 - MER4A LTR ERV1 -566 98 1 434 246 22 93 chr4 7999793 7999976 -194328371 - MLT1F1 LTR MaLR -370 172 3 444 245 15 110 chr4 8000098 8000298 -194328049 - MLT1F1-int LTR MaLR -84 1287 1107 518 309 6 12 chr4 8000583 8000745 -194327602 - MLT1F1-int LTR MaLR -510 861 701 478 271 41 58 chr4 8001077 8001270 -194327077 + L1ME3 LINE L1 6009 6162 0 242 356 12 6 chr4 8001313 8001473 -194326874 + (CG)n Simple_repeat Simple_repeat 2 162 0 213 211 0 18 chr4 8001667 8001724 -194326623 + (CCGCG)n Simple_repeat Simple_repeat 4 59 0 23 0 0 0 chr4 8001733 8001756 -194326591 + GC_rich Low_complexity Low_complexity 1 23 0 713 149 18 0 chr4 8002363 8002477 -194325870 - FLAM_A SINE Alu -17 116 1 21 0 0 0 chr4 8002710 8002731 -194325616 + AT_rich Low_complexity Low_complexity 1 21 0 2535 50 0 40 chr4 8003122 8003445 -194324902 - AluY SINE Alu -1 310 1 1808 98 84 42 chr4 8003977 8004264 -194324083 + AluY SINE Alu 1 299 -12 634 227 64 36 chr4 8004320 8004540 -194323807 + L2 LINE L2 2560 2785 -529 2121 123 0 3 chr4 8005206 8005499 -194322848 + AluJo SINE Alu 4 295 -17 311 297 95 34 chr4 8006073 8006221 -194322126 + L2 LINE L2 3155 3311 -2 231 61 0 0 chr4 8006797 8006830 -194321517 + (TC)n Simple_repeat Simple_repeat 1 33 0 2209 116 0 0 chr4 8006985 8007270 -194321077 + AluSq SINE Alu 1 285 -28 342 45 0 0 chr4 8007270 8007314 -194321033 + (CA)n Simple_repeat Simple_repeat 2 45 0 219 88 0 0 chr4 8007436 8007470 -194320877 + (TG)n Simple_repeat Simple_repeat 2 35 0 409 267 0 19 chr4 8007735 8007840 -194320507 + MIR SINE MIR 64 166 -96 2186 182 35 7 chr4 8007935 8008392 -194319955 - L1MB3 LINE L1 0 6183 5714 183 305 21 53 chr4 8009009 8009104 -194319243 - L2 LINE L2 -485 2829 2738 321 241 36 0 chr4 8009491 8009574 -194318773 + MIR3 SINE MIR 81 166 -42 549 203 206 103 chr4 8009725 8010006 -194318341 + MLT1G LTR MaLR 220 524 -66 637 118 16 53 chr4 8010786 8010973 -194317374 + (CA)n Simple_repeat Simple_repeat 1 180 0 325 189 20 40 chr4 8011023 8011379 -194316968 + (CA)n Simple_repeat Simple_repeat 1 348 0 1383 55 0 6 chr4 8011565 8011730 -194316617 - AluY SINE Alu -147 164 1 2258 113 19 10 chr4 8011917 8012226 -194316121 - AluSx SINE Alu 0 312 1 724 149 14 61 chr4 8012835 8012983 -194315364 - FLAM_C SINE Alu -1 142 2 216 234 21 0 chr4 8013676 8013723 -194314624 + L2 LINE L2 3223 3270 -2 2009 128 59 6 chr4 8013793 8014113 -194314234 + MER1B DNA MER1_type 1 337 0 23 0 0 0 chr4 8014565 8014588 -194313759 + AT_rich Low_complexity Low_complexity 1 23 0 1897 170 39 0 chr4 8015833 8016163 -194312184 - MER2 DNA MER2_type 0 344 2 198 333 15 0 chr4 8016230 8016296 -194312051 - MIR SINE MIR -1 261 195 537 273 133 60 chr4 8016442 8016827 -194311520 - L2 LINE L2 -484 2830 2418 2039 128 21 0 chr4 8016830 8017120 -194311227 + AluSx SINE Alu 1 296 -16 1014 125 79 0 chr4 8017120 8017272 -194311075 + AluSg/x SINE Alu 134 297 -15 221 306 116 41 chr4 8017274 8017421 -194310926 - L2 LINE L2 -893 2421 2264 235 274 84 22 chr4 8017922 8018148 -194310199 - L1ME2 LINE L1 -217 5947 5708 2408 64 7 13 chr4 8018160 8018458 -194309889 - AluSc SINE Alu -13 296 1 1588 184 9 35 chr4 8018918 8019233 -194309114 + AluJb SINE Alu 3 309 -3 292 225 28 14 chr4 8019309 8019380 -194308967 - MIR SINE MIR -111 151 80 552 236 205 0 chr4 8020120 8020315 -194308032 - MLT1H1 LTR MaLR -13 542 308 265 266 21 43 chr4 8020500 8020594 -194307753 + HAL1 LINE L1 450 541 -1966 678 242 42 9 chr4 8020681 8020896 -194307451 + HAL1 LINE L1 1016 1237 -1270 274 316 64 22 chr4 8020906 8021035 -194307312 - MIR SINE MIR -67 141 24 193 350 162 5 chr4 8021678 8021875 -194306472 - MIR SINE MIR -7 255 28 612 284 34 59 chr4 8022423 8022662 -194305685 - MIR SINE MIR -14 248 16 35 41 0 0 chr4 8022723 8022772 -194305575 + AT_rich Low_complexity Low_complexity 1 49 0 1770 94 51 0 chr4 8022817 8023052 -194305295 + AluSq SINE Alu 1 247 -66 856 160 96 0 chr4 8023569 8023725 -194304622 + AluJb SINE Alu 121 291 -21 1032 185 0 14 chr4 8023852 8024063 -194304284 - MER96B DNA MER1_type? -206 211 4 316 262 43 64 chr4 8025362 8025519 -194302828 + L1MC4a LINE L1 5703 5857 -1951 2220 114 0 7 chr4 8025519 8025817 -194302530 + AluSq SINE Alu 1 296 -17 316 262 43 64 chr4 8025817 8025846 -194302501 + L1MC4a LINE L1 5857 5885 -1923 2003 133 3 14 chr4 8026869 8027162 -194301185 + AluJo SINE Alu 1 290 -22 2127 123 0 13 chr4 8027162 8027462 -194300885 - AluSx SINE Alu -16 296 1 405 316 70 29 chr4 8027467 8027711 -194300636 - HERV16 LTR ERVL -3456 1540 1287 529 183 0 11 chr4 8028004 8028097 -194300250 - MLT1I LTR MaLR -317 92 1 1918 136 0 4 chr4 8028150 8028422 -194299925 + AluSx SINE Alu 22 292 -20 241 307 40 10 chr4 8028600 8028701 -194299646 + L1MC/D LINE L1 5475 5578 -766 365 308 119 30 chr4 8028712 8029086 -194299261 - LTR16A LTR ERVL -28 436 13 222 341 47 0 chr4 8029188 8029273 -194299074 + L2 LINE L2 3180 3268 -4 416 259 40 26 chr4 8029308 8029559 -194298788 + L2 LINE L2 2580 2944 -328 318 200 0 29 chr4 8029573 8029643 -194298704 - L2 LINE L2 -241 3072 3005 1095 184 16 5 chr4 8030013 8030203 -194298144 + AluJb SINE Alu 43 234 -78 1617 145 0 50 chr4 8030272 8030554 -194297793 + AluJo SINE Alu 31 298 -14 2423 96 0 0 chr4 8030566 8030867 -194297480 + AluSq SINE Alu 1 301 -12 1119 186 29 0 chr4 8030876 8031080 -194297267 + MLT1A1 LTR MaLR 156 365 0 263 206 82 27 chr4 8031080 8031144 -194297203 + MLT1F1 LTR MaLR 496 563 -4 1532 216 26 31 chr4 8031165 8031398 -194296949 - L1ME LINE L1 -384 5778 5546 868 228 60 85 chr4 8031398 8031798 -194296549 + MLT1B LTR MaLR 1 390 0 1532 216 26 31 chr4 8031798 8031985 -194296362 - L1ME LINE L1 -616 5546 5360 201 339 0 0 chr4 8032210 8032272 -194296075 + MIR SINE MIR 92 153 -55 351 157 0 96 chr4 8032419 8032617 -194295730 + (CAGCC)n Simple_repeat Simple_repeat 2 180 0 384 171 0 67 chr4 8032645 8032838 -194295509 + (CAGCC)n Simple_repeat Simple_repeat 1 180 0 443 141 0 70 chr4 8032883 8033068 -194295279 + (CAGCC)n Simple_repeat Simple_repeat 2 173 0 387 162 0 70 chr4 8033099 8033284 -194295063 + (CAGCC)n Simple_repeat Simple_repeat 2 173 0 830 241 138 20 chr4 8033856 8034284 -194294063 - MLT1C LTR MaLR -17 609 11 804 241 97 0 chr4 8035522 8035759 -194292588 - MLT1B LTR MaLR 0 390 131 371 301 114 5 chr4 8036583 8036802 -194291545 - Charlie8 DNA MER1_type -2174 243 1 317 299 146 18 chr4 8036901 8037065 -194291282 + L2 LINE L2 2876 3060 -253 223 320 64 0 chr4 8037135 8037213 -194291134 + L2 LINE L2 3226 3308 -5 2050 133 3 13 chr4 8037214 8037515 -194290832 + AluJb SINE Alu 1 298 -14 1233 67 0 0 chr4 8038152 8038317 -194290030 + L1PA2 LINE L1 5991 6155 0 2000 169 54 12 chr4 8038346 8038753 -194289594 - MSTB LTR MaLR -2 424 1 379 351 20 0 chr4 8040235 8040383 -194287964 - MIR3 SINE MIR -28 180 30 295 266 85 11 chr4 8041601 8041695 -194286652 + L2 LINE L2 3206 3306 -7 216 306 109 34 chr4 8041705 8041852 -194286495 + MIR SINE MIR 89 246 -16 180 296 0 0 chr4 8042038 8042082 -194286265 + MIR3 SINE MIR 162 205 -3 557 238 0 0 chr4 8042177 8042303 -194286044 + FLAM_A SINE Alu 1 126 -7 2336 64 0 30 chr4 8044448 8044744 -194283603 + AluY SINE Alu 21 307 -4 210 333 0 14 chr4 8044875 8044944 -194283403 + MIR SINE MIR 79 146 -62 674 168 0 0 chr4 8045435 8045554 -194282793 - FLAM_A SINE Alu 0 142 24 469 272 159 20 chr4 8046181 8046376 -194281971 - L3 LINE CR1 -123 1454 1233 278 329 74 27 chr4 8048147 8048296 -194280051 + MIR3 SINE MIR 4 159 -49 3252 249 69 79 chr4 8049325 8050306 -194278041 - L1MD3 LINE L1 -1 8041 7051 2180 116 7 7 chr4 8050306 8050599 -194277748 - AluSx SINE Alu -19 293 1 2512 66 3 7 chr4 8050604 8050909 -194277438 - AluY SINE Alu -7 304 1 3252 249 69 79 chr4 8050909 8051376 -194276971 - L1MD3 LINE L1 -995 7047 6614 2423 62 3 3 chr4 8051674 8051963 -194276384 + AluY SINE Alu 23 311 0 2213 120 0 13 chr4 8052551 8052859 -194275488 + AluJo SINE Alu 1 304 -8 860 190 118 10 chr4 8053895 8054090 -194274257 - MER58A DNA MER1_type -8 216 1 21 57 0 0 chr4 8054180 8054215 -194274132 + AT_rich Low_complexity Low_complexity 1 35 0 1790 244 69 41 chr4 8054290 8055417 -194272930 + Charlie1a DNA MER1_type 1 1206 -249 1725 155 34 30 chr4 8055506 8055802 -194272545 - AluJb SINE Alu -2 310 14 271 360 55 24 chr4 8055862 8056026 -194272321 + MIR3 SINE MIR 25 193 -15 22 0 0 0 chr4 8057019 8057041 -194271306 + AT_rich Low_complexity Low_complexity 1 22 0 229 275 66 0 chr4 8058243 8058334 -194270013 + MIR3 SINE MIR 109 205 -3 1380 223 62 13 chr4 8059931 8060316 -194268031 - MER21B LTR ERV1 -168 695 292 324 158 12 98 chr4 8060376 8060458 -194267889 - MER21B LTR ERV1 -788 75 1 183 171 0 0 chr4 8060560 8060595 -194267752 + L2 LINE L2 3276 3310 -3 290 254 45 0 chr4 8060614 8060681 -194267666 - MER58A DNA MER1_type 0 224 155 234 176 39 0 chr4 8060713 8060764 -194267583 - MER58A DNA MER1_type -28 79 27 1690 205 3 3 chr4 8061529 8061827 -194266520 - AluJb SINE Alu -14 298 1 196 299 13 13 chr4 8062280 8062357 -194265990 - L2 LINE L2 -2 3270 3194 2339 102 0 0 chr4 8064042 8064335 -194264012 + AluSx SINE Alu 1 293 -19 659 183 9 0 chr4 8066835 8066950 -194261397 - FLAM_A SINE Alu -17 116 1 362 296 117 15 chr4 8067648 8067844 -194260503 - MIR SINE MIR -12 250 35 408 309 26 7 chr4 8069254 8069406 -194258941 - MIR SINE MIR -74 188 34 243 146 0 0 chr4 8071066 8071107 -194257240 + (CA)n Simple_repeat Simple_repeat 2 42 0 194 341 80 22 chr4 8071114 8071252 -194257095 - MIR SINE MIR -110 152 7 696 269 90 5 chr4 8071608 8071820 -194256527 - MIR SINE MIR -6 256 27 308 308 13 0 chr4 8071852 8071930 -194256417 - L2 LINE L2 0 3313 3235 1229 176 15 0 chr4 8072334 8072539 -194255808 - AluJb SINE Alu -21 291 84 182 376 82 0 chr4 8074995 8075080 -194253267 - L2 LINE L2 -18 3295 3204 191 280 160 0 chr4 8075807 8075882 -194252465 + MIR SINE MIR 97 183 -79 223 273 38 15 chr4 8076018 8076150 -194252197 + (TA)n Simple_repeat Simple_repeat 2 136 0 407 219 12 0 chr4 8076161 8076243 -194252104 - FLAM_A SINE Alu -59 83 1 423 294 128 11 chr4 8076257 8076437 -194251910 - L2 LINE L2 -31 3282 3082 192 328 102 55 chr4 8076813 8077264 -194251083 + L2 LINE L2 1614 2085 -1229 280 283 78 56 chr4 8078831 8079011 -194249336 + MIR3 SINE MIR 18 201 -7 1719 163 24 7 chr4 8079395 8079684 -194248663 - AluJb SINE Alu -18 294 1 223 251 194 52 chr4 8081573 8081776 -194246571 - MIR SINE MIR -35 227 1 1755 132 7 15 chr4 8082376 8082649 -194245698 - AluJo SINE Alu -28 284 14 198 298 125 39 chr4 8082649 8082753 -194245594 + MIR SINE MIR 113 225 -37 940 149 0 0 chr4 8082894 8083042 -194245305 - L1MB3 LINE L1 0 6183 6036 755 151 0 43 chr4 8083084 8083223 -194245124 - FLAM_C SINE Alu -10 133 1 1174 240 50 8 chr4 8083224 8083583 -194244764 - L1MB3 LINE L1 -218 5965 5592 22 0 0 0 chr4 8084441 8084463 -194243884 + AT_rich Low_complexity Low_complexity 1 22 0 351 296 106 8 chr4 8088983 8089115 -194239232 - L2 LINE L2 -3 3269 3125 1362 238 57 59 chr4 8090010 8090539 -194237808 + MER74A LTR ERVL 30 557 -1 243 240 0 0 chr4 8091536 8091586 -194236761 - L2 LINE L2 0 3272 3223 2680 93 8 3 chr4 8093245 8093598 -194234749 - THE1A LTR MaLR 0 355 1 212 289 0 0 chr4 8094001 8094053 -194234294 - MIR SINE MIR -22 240 189 2208 68 10 0 chr4 8094075 8094367 -194233980 - AluSq SINE Alu -18 295 1 1782 318 73 44 chr4 8094857 8095689 -194232658 + ERVL LTR ERVL 1529 2412 -3352 2263 115 144 3 chr4 8095689 8096064 -194232283 + MSTA LTR MaLR 1 428 0 1782 318 73 44 chr4 8096064 8096500 -194231847 + ERVL LTR ERVL 2412 2834 -2930 232 270 58 44 chr4 8097488 8097625 -194230722 - HAL1b LINE L1 -895 453 315 2412 47 3 10 chr4 8097864 8098163 -194230184 - AluY SINE Alu -14 297 1 960 286 92 65 chr4 8099184 8099891 -194228456 + L2 LINE L2 1140 1865 -1449 433 340 20 40 chr4 8100032 8100282 -194228065 + L2 LINE L2 2245 2489 -825 1230 264 89 12 chr4 8101521 8102014 -194226333 - MER90 LTR ERV1 0 614 84 184 311 27 0 chr4 8103468 8103542 -194224805 + L2 LINE L2 3200 3275 -38 408 88 0 0 chr4 8103630 8103687 -194224660 + (TG)n Simple_repeat Simple_repeat 1 57 0 216 0 0 0 chr4 8104081 8104105 -194224242 + (TC)n Simple_repeat Simple_repeat 2 25 0 353 240 156 7 chr4 8106090 8106244 -194222103 + MIR3 SINE MIR 17 193 -15 218 204 0 0 chr4 8107874 8107918 -194220429 + MIR SINE MIR 104 147 -61 346 339 119 0 chr4 8108295 8108472 -194219875 + MIR SINE MIR 51 248 -14 182 323 0 16 chr4 8108706 8108768 -194219579 + MIR SINE MIR 93 153 -109 254 254 74 96 chr4 8108983 8109184 -194219163 + MIR SINE MIR 19 227 -35 182 253 39 54 chr4 8109215 8109323 -194219024 + MIR SINE MIR 50 144 -64 647 251 165 56 chr4 8109358 8109789 -194218558 + MLT1G3 LTR MaLR 92 539 -3 195 235 226 17 chr4 8110574 8110689 -194217658 + L2 LINE L2 3014 3152 -120 209 326 12 0 chr4 8111005 8111072 -194217275 - MIR SINE MIR -63 145 74 211 307 13 0 chr4 8111533 8111608 -194216739 + MIR SINE MIR 10 85 -177 205 383 145 9 chr4 8111620 8111834 -194216513 - L2 LINE L2 -812 2502 2260 277 360 9 9 chr4 8111846 8111957 -194216390 + L2 LINE L2 2966 3076 -196 414 230 20 1 chr4 8112689 8112801 -194215546 + MIR SINE MIR 33 145 -63 248 298 20 57 chr4 8114516 8114638 -194213709 + MIR SINE MIR 35 150 -70 210 345 109 24 chr4 8114673 8114838 -194213509 - L2 LINE L2 -64 3208 3030 4449 188 21 40 chr4 8115178 8116395 -194211952 - L1M2 LINE L1 -744 5402 4315 2817 191 69 1 chr4 8116601 8117257 -194211090 - L1MB7 LINE L1 -41 6143 5444 261 278 41 10 chr4 8117418 8117515 -194210832 + MLT1J1 LTR MaLR 44 143 -303 182 359 98 0 chr4 8119564 8119656 -194208691 + L2 LINE L2 3138 3238 -34 231 180 20 40 chr4 8119700 8119750 -194208597 + MIR SINE MIR 104 152 -56 333 197 82 0 chr4 8120344 8120434 -194207913 - MIR SINE MIR -64 144 64 1501 127 5 9 chr4 8120885 8121128 -194207219 - AluSg SINE Alu 0 303 62 248 318 37 17 chr4 8121426 8121557 -194206790 - MIR3 SINE MIR -74 134 15 218 350 21 43 chr4 8121732 8121872 -194206475 + L2 LINE L2 2725 2861 -453 239 293 0 0 chr4 8122397 8122455 -194205892 + (CACCAT)n Simple_repeat Simple_repeat 5 62 0 * 954 174 2 5 chr4 8122426 8123375 -194204972 + (CCA)n Simple_repeat Simple_repeat 1 946 0 252 86 0 0 chr4 8123847 8123882 -194204465 + (CTCA)n Simple_repeat Simple_repeat 1 35 0 213 213 0 0 chr4 8124498 8124545 -194203802 + CT-rich Low_complexity Low_complexity 3 49 0 884 188 152 25 chr4 8124725 8125001 -194203346 + MLT1C LTR MaLR 17 327 -140 188 182 0 0 chr4 8125082 8125115 -194203232 - MIR SINE MIR -113 149 117 238 284 82 8 chr4 8125417 8125551 -194202796 - L1ME4a LINE L1 0 6121 5978 3165 234 71 40 chr4 8125583 8126003 -194202344 - L1MD1 LINE L1 -5 6237 5831 2020 132 0 3 chr4 8126003 8126299 -194202048 - AluSx SINE Alu -17 295 1 3165 234 71 40 chr4 8126299 8127257 -194201090 - L1MD1 LINE L1 -411 5831 4813 228 122 0 0 chr4 8127410 8127451 -194200896 + (TG)n Simple_repeat Simple_repeat 2 42 0 393 285 54 8 chr4 8127985 8128155 -194200192 + MIR3 SINE MIR 37 210 -46 343 244 62 31 chr4 8128547 8128740 -194199607 + L1ME4a LINE L1 5922 6120 -1 239 156 39 0 chr4 8129632 8129689 -194198658 - MIR SINE MIR -62 146 99 229 327 52 59 chr4 8129821 8129974 -194198373 + MIR3 SINE MIR 12 163 -45 281 293 213 32 chr4 8129990 8130338 -194198009 - L2 LINE L2 -3 3269 2859 845 196 17 7 chr4 8130747 8131170 -194197177 + (TGGA)n Simple_repeat Simple_repeat 1 427 0 365 306 106 6 chr4 8131539 8131699 -194196648 - L2 LINE L2 -103 3169 2994 688 206 265 5 chr4 8132878 8133097 -194195250 + MLT1F1 LTR MaLR 7 282 -285 243 241 17 0 chr4 8133343 8133401 -194194946 - MIR SINE MIR -63 145 87 950 177 89 7 chr4 8133694 8134062 -194194285 + MER31A LTR ERV1 27 478 -7 523 273 40 48 chr4 8134136 8134385 -194193962 + MER46C DNA MER2_type 90 336 -2 453 149 0 0 chr4 8135693 8135767 -194192580 - MIR SINE MIR -118 144 71 240 217 83 75 chr4 8137140 8137260 -194191087 - MIR SINE MIR -117 145 25 272 278 52 61 chr4 8139712 8139827 -194188520 - L2 LINE L2 0 3313 3200 354 344 33 0 chr4 8140192 8140314 -194188033 + L2 LINE L2 3182 3307 -6 217 339 0 0 chr4 8140433 8140495 -194187852 + MIR SINE MIR 92 153 -55 369 174 0 65 chr4 8140630 8140910 -194187437 + (CAGCC)n Simple_repeat Simple_repeat 1 261 0 433 150 0 70 chr4 8141009 8141196 -194187151 + (CAGCC)n Simple_repeat Simple_repeat 2 175 0 362 168 0 70 chr4 8141268 8141453 -194186894 + (CAGCC)n Simple_repeat Simple_repeat 2 173 0 835 255 115 23 chr4 8142052 8142463 -194185884 - MLT1C LTR MaLR -17 488 40 197 181 28 56 chr4 8143832 8143904 -194184443 + L2 LINE L2 3027 3096 -176 434 275 186 36 chr4 8144569 8144816 -194183531 + L2 LINE L2 2989 3272 0 316 232 24 0 chr4 8144981 8145063 -194183284 - MIR SINE MIR -118 144 61 202 309 82 0 chr4 8145877 8145987 -194182360 + L2 LINE L2 2735 2853 -461 413 160 8 50 chr4 8146181 8146300 -194182047 + CT-rich Low_complexity Low_complexity 2 115 0 339 200 88 0 chr4 8146504 8146584 -194181763 - MIR SINE MIR -110 152 66 195 238 79 16 chr4 8146844 8146907 -194181440 + L3 LINE CR1 968 1034 -543 192 300 0 33 chr4 8147622 8147682 -194180665 + L3 LINE CR1 1410 1467 -110 264 260 55 0 chr4 8150927 8151000 -194177347 - MIR3 SINE MIR -17 191 115 1221 96 0 0 chr4 8151466 8151677 -194176670 + (TCCA)n Simple_repeat Simple_repeat 1 211 0 1386 56 0 0 chr4 8151697 8151877 -194176470 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 1080 124 0 0 chr4 8152097 8152275 -194176072 + (TCCA)n Simple_repeat Simple_repeat 3 180 0 307 371 111 22 chr4 8152354 8152715 -194175632 - L2 LINE L2 -3 3269 2877 201 278 19 0 chr4 8152724 8152778 -194175569 + L2 LINE L2 3217 3271 -1 299 226 66 47 chr4 8153070 8153176 -194175171 - MIR3 SINE MIR 0 208 101 212 341 171 43 chr4 8154642 8154941 -194173406 + L2 LINE L2 2913 3249 -23 332 262 58 9 chr4 8155010 8155120 -194173227 - MIR3 SINE MIR -53 155 58 228 317 37 0 chr4 8156170 8156252 -194172095 - L2 LINE L2 0 3272 3188 776 145 36 16 chr4 8156739 8157047 -194171300 + (TCCA)n Simple_repeat Simple_repeat 1 314 0 535 156 50 0 chr4 8157067 8157227 -194171120 + (TCCA)n Simple_repeat Simple_repeat 3 170 0 715 164 29 0 chr4 8157252 8157423 -194170924 + (TCCA)n Simple_repeat Simple_repeat 3 178 0 606 158 40 0 chr4 8157448 8157680 -194170667 + (TCCA)n Simple_repeat Simple_repeat 1 241 0 348 314 42 0 chr4 8158837 8158955 -194169392 + MIR SINE MIR 50 172 -90 234 261 0 0 chr4 8159164 8159210 -194169137 + MIR SINE MIR 111 156 -106 938 214 45 15 chr4 8159504 8159770 -194168577 + L1MB7 LINE L1 5902 6175 -9 341 242 87 27 chr4 8161453 8161602 -194166745 + L1ME4a LINE L1 5952 6109 -12 2233 104 7 0 chr4 8161792 8162091 -194166256 - AluSx SINE Alu -11 301 1 359 297 27 18 chr4 8162708 8162819 -194165528 + L2 LINE L2 3201 3312 -1 270 279 0 0 chr4 8162819 8162880 -194165467 - MIR SINE MIR -92 170 110 243 358 8 8 chr4 8162965 8163085 -194165262 - L2 LINE L2 -220 3052 2933 230 359 127 0 chr4 8163124 8163266 -194165081 - MIR SINE MIR -26 236 77 221 282 18 3 chr4 8163711 8163779 -194164568 + MIR SINE MIR 21 89 -119 404 288 103 32 chr4 8163871 8164152 -194164195 + MLT1H LTR MaLR 147 447 -102 378 209 180 57 chr4 8164158 8164369 -194163978 + MLT1H LTR MaLR 299 535 -14 201 224 41 0 chr4 8165611 8165660 -194162687 - MIR SINE MIR -134 128 78 251 193 96 36 chr4 8165675 8165758 -194162589 - MIR SINE MIR -1 261 174 1788 212 37 33 chr4 8165818 8166309 -194162038 - MLT1D LTR MaLR -1 504 12 530 241 60 79 chr4 8166320 8166585 -194161762 - MLT1D-int LTR MaLR 0 1371 1112 655 251 184 43 chr4 8167726 8168145 -194160202 - MLT1D LTR MaLR -25 480 3 693 298 48 4 chr4 8168483 8168711 -194159636 - MIR SINE MIR -19 243 6 453 244 17 9 chr4 8168961 8169076 -194159271 - MIR SINE MIR -141 121 6 287 304 35 17 chr4 8169981 8170096 -194158251 + MIR SINE MIR 22 138 -70 195 214 0 0 chr4 8170393 8170463 -194157884 + GA-rich Low_complexity Low_complexity 2 71 0 504 196 0 30 chr4 8170517 8170685 -194157662 + GA-rich Low_complexity Low_complexity 1 163 0 227 243 0 27 chr4 8170739 8170850 -194157497 + GA-rich Low_complexity Low_complexity 1 108 0 667 175 267 0 chr4 8170926 8171143 -194157204 + MER58 DNA MER1_type 2146 2420 0 227 255 0 0 chr4 8171163 8171214 -194157133 + G-rich Low_complexity Low_complexity 4 54 0 450 219 21 20 chr4 8171540 8171671 -194156676 + MIR SINE MIR 33 165 -43 191 323 16 0 chr4 8171863 8171925 -194156422 - L2 LINE L2 -2 3311 3249 2425 59 20 3 chr4 8172878 8173184 -194155163 - AluY SINE Alu 0 311 1 553 345 93 13 chr4 8173935 8174323 -194154024 - L1ME4a LINE L1 -225 5896 5478 474 320 10 10 chr4 8174590 8174784 -194153563 - MLT1J LTR MaLR -295 216 23 6141 180 50 43 chr4 8175082 8175240 -194153107 - L1M4c LINE L1 -4787 1597 1442 2173 117 3 0 chr4 8175240 8175540 -194152807 + AluSx SINE Alu 2 302 -10 6141 180 50 43 chr4 8175540 8176967 -194151380 - L1M4c LINE L1 -4942 1442 1 300 422 12 12 chr4 8177144 8177305 -194151042 + L1ME4a LINE L1 5324 5484 -637 305 307 93 29 chr4 8177375 8177655 -194150692 + L1ME4a LINE L1 5594 5891 -230 264 349 28 94 chr4 8179000 8179435 -194148912 + L2 LINE L2 2907 3312 -1 331 330 19 0 chr4 8179543 8179646 -194148701 + MIR SINE MIR 47 151 -111 310 313 0 0 chr4 8179761 8179841 -194148506 - L2 LINE L2 -23 3290 3211 1261 246 62 42 chr4 8181138 8181635 -194146712 + MER90 LTR ERV1 108 614 0 360 274 75 52 chr4 8181878 8182130 -194146217 - L2 LINE L2 -173 3099 2842 464 371 125 0 chr4 8182307 8182587 -194145760 + L3 LINE CR1 1230 1544 -33 321 89 0 0 chr4 8183728 8183773 -194144574 + (TCC)n Simple_repeat Simple_repeat 3 47 0 1071 102 17 0 chr4 8184131 8184308 -194144039 + (CTCA)n Simple_repeat Simple_repeat 1 180 0 981 144 0 0 chr4 8184308 8184338 -194144009 + (CTCA)n Simple_repeat Simple_repeat 1 204 0 981 144 0 0 chr4 8184338 8184512 -194143835 + (CTCA)n Simple_repeat Simple_repeat 4 177 0 395 277 31 15 chr4 8184651 8184781 -194143566 + MER63A DNA MER1_type 53 184 -26 182 61 0 30 chr4 8185233 8185266 -194143081 + (TGGGGG)n Simple_repeat Simple_repeat 4 35 0 391 288 22 66 chr4 8186342 8186543 -194141804 - MIR3 SINE MIR -56 206 15 272 345 37 15 chr4 8186734 8186903 -194141444 - MIR SINE MIR -68 140 3 368 286 119 24 chr4 8187361 8187571 -194140776 - MIR SINE MIR -2 260 31 204 40 0 0 chr4 8188180 8188205 -194140142 + (T)n Simple_repeat Simple_repeat 1 25 0 1038 152 1 6 chr4 8189134 8189936 -194138411 + (CTCA)n Simple_repeat Simple_repeat 1 797 0 298 183 33 0 chr4 8189936 8189996 -194138351 + (TTCA)n Simple_repeat Simple_repeat 3 64 0 574 214 6 16 chr4 8189998 8190180 -194138167 + (CTCA)n Simple_repeat Simple_repeat 1 180 0 349 275 28 0 chr4 8192003 8192112 -194136235 + MER45C DNA AcHobo 83 194 -759 225 0 0 0 chr4 8192254 8192279 -194136068 + (TG)n Simple_repeat Simple_repeat 2 26 0 647 255 165 48 chr4 8193815 8193939 -194134408 + MER45C DNA AcHobo 1 109 -844 2228 89 3 0 chr4 8193939 8194231 -194134116 + AluSp SINE Alu 1 293 -20 647 255 165 48 chr4 8194231 8194482 -194133865 + MER45C DNA AcHobo 109 420 -533 347 237 0 3 chr4 8194488 8194646 -194133701 + MER45C DNA AcHobo 756 953 0 1776 191 70 5 chr4 8195564 8195963 -194132384 + LTR32 LTR ERVL 47 471 0 492 32 0 0 chr4 8196704 8196766 -194131581 + (GGCTG)n Simple_repeat Simple_repeat 4 65 0 242 225 144 9 chr4 8196766 8196877 -194131470 + MIR SINE MIR 19 144 -64 187 303 97 28 chr4 8196976 8197121 -194131226 + MIR SINE MIR 87 241 -21 248 365 21 0 chr4 8197207 8197303 -194131044 - MIR SINE MIR -80 182 85 224 267 134 62 chr4 8198089 8198378 -194129969 + L2 LINE L2 2771 3084 -188 361 218 129 0 chr4 8198897 8198998 -194129349 + L2 LINE L2 3184 3297 -16 240 35 0 0 chr4 8199264 8199293 -194129054 + (TCC)n Simple_repeat Simple_repeat 2 30 0 270 221 63 32 chr4 8200324 8200419 -194127928 + L2 LINE L2 2917 3014 -258 805 194 70 0 chr4 8200637 8200823 -194127524 - MLT1B LTR MaLR 0 390 192 773 153 0 8 chr4 8200827 8200951 -194127396 - FRAM SINE Alu -5 171 49 859 148 77 0 chr4 8200984 8201153 -194127194 - MLT1B LTR MaLR -201 189 8 476 274 0 0 chr4 8201466 8201590 -194126757 - MER58B DNA MER1_type 0 341 218 299 278 216 0 chr4 8201740 8201837 -194126510 + L2 LINE L2 3182 3299 -14 207 88 0 0 chr4 8201966 8202000 -194126347 + (CA)n Simple_repeat Simple_repeat 1 34 0 376 250 58 17 chr4 8202002 8202122 -194126225 - MIR SINE MIR -58 204 80 261 279 70 0 chr4 8203867 8203953 -194124394 + L2 LINE L2 2993 3084 -188 250 217 12 24 chr4 8204500 8204583 -194123764 + MLT1H LTR MaLR 111 192 -357 1113 100 13 20 chr4 8205426 8205784 -194122563 + (TCCA)n Simple_repeat Simple_repeat 1 537 0 234 231 0 31 chr4 8205820 8205885 -194122462 - L2 LINE L2 -53 3219 3157 1887 132 66 44 chr4 8205945 8206310 -194122037 + THE1C LTR MaLR 1 373 -2 303 308 154 0 chr4 8206501 8206696 -194121651 + LTR33 LTR ERVL 50 274 -247 481 268 39 22 chr4 8206753 8206932 -194121415 + MLT1D LTR MaLR 16 197 -308 474 228 0 0 chr4 8206938 8207176 -194121171 + (CA)n Simple_repeat Simple_repeat 1 238 0 347 247 6 0 chr4 8207195 8207353 -194120994 + (CA)n Simple_repeat Simple_repeat 1 159 0 198 241 0 0 chr4 8207406 8207493 -194120854 + (CA)n Simple_repeat Simple_repeat 1 87 0 360 244 0 0 chr4 8207554 8207734 -194120613 + (CA)n Simple_repeat Simple_repeat 1 180 0 432 233 0 0 chr4 8207769 8207941 -194120406 + (CA)n Simple_repeat Simple_repeat 2 173 0 234 248 0 0 chr4 8207959 8208068 -194120279 + (CA)n Simple_repeat Simple_repeat 1 109 0 596 271 81 9 chr4 8208114 8208335 -194120012 + MLT1D LTR MaLR 261 497 -8 318 98 0 0 chr4 8209734 8209785 -194118562 + (TTCA)n Simple_repeat Simple_repeat 4 54 0 251 366 58 31 chr4 8209882 8210106 -194118241 - L2 LINE L2 0 3313 3084 1096 262 77 25 chr4 8210262 8210701 -194117646 + MLT1C LTR MaLR 6 467 0 312 127 0 0 chr4 8211064 8211119 -194117228 + (TTCA)n Simple_repeat Simple_repeat 2 56 0 195 209 47 0 chr4 8211259 8211302 -194117045 - MIR SINE MIR -204 58 14 335 136 0 45 chr4 8212077 8212143 -194116204 - L1MD3 LINE L1 -13 7982 7920 263 263 222 0 chr4 8212149 8212248 -194116099 - MIR SINE MIR -128 134 14 2393 260 92 4 chr4 8212298 8213076 -194115271 - L1MC3 LINE L1 -70 7715 6869 2084 112 10 0 chr4 8213093 8213389 -194114958 - AluSx SINE Alu -13 299 1 365 263 29 36 chr4 8214010 8214147 -194114200 - L2 LINE L2 -216 3056 2921 275 286 95 24 chr4 8214490 8214616 -194113731 + L2 LINE L2 2959 3093 -179 299 316 73 7 chr4 8215328 8215464 -194112883 - MIR SINE MIR -37 225 81 210 118 0 0 chr4 8216415 8216449 -194111898 + (A)n Simple_repeat Simple_repeat 1 34 0 443 374 75 19 chr4 8217387 8217919 -194110428 - L2 LINE L2 -661 2653 2092 32 0 0 0 chr4 8218195 8218227 -194110120 + AT_rich Low_complexity Low_complexity 1 32 0 500 172 35 132 chr4 8218227 8218401 -194109946 - L1MA7 LINE L1 -2 6289 6133 615 231 18 1 chr4 8218585 8218770 -194109577 - L1MB4 LINE L1 0 6180 5992 252 253 120 0 chr4 8218813 8218888 -194109459 + L2 LINE L2 3205 3288 -25 2254 72 10 0 chr4 8218948 8219241 -194109106 - AluY SINE Alu -15 296 1 255 31 0 0 chr4 8219268 8219300 -194109047 + (TTCTG)n Simple_repeat Simple_repeat 5 36 0 1925 150 3 0 chr4 8220197 8220503 -194107844 + AluJb SINE Alu 1 307 -5 344 313 62 58 chr4 8220604 8220812 -194107535 - L2 LINE L2 -1 3312 3104 328 294 32 97 chr4 8220812 8221091 -194107256 + L1ME4a LINE L1 5838 6098 -23 1731 141 0 28 chr4 8221297 8221625 -194106722 - AluJo SINE Alu 0 320 1 389 259 6 0 chr4 8221646 8221804 -194106543 + CT-rich Low_complexity Low_complexity 1 159 0 440 345 21 23 chr4 8221988 8222218 -194106129 - MIR SINE MIR -18 244 17 361 271 120 30 chr4 8223371 8223504 -194104843 - MIR SINE MIR -10 252 108 221 295 63 11 chr4 8223630 8223725 -194104622 - L2 LINE L2 -54 3259 3160 200 275 14 0 chr4 8224011 8224080 -194104267 - L2 LINE L2 -1230 2084 2015 253 146 0 0 chr4 8225036 8225077 -194103270 - L3 LINE CR1 -112 1465 1425 873 161 3 0 chr4 8225886 8226179 -194102168 + (CA)n Simple_repeat Simple_repeat 1 294 0 409 292 34 34 chr4 8226894 8227072 -194101275 + LTR16A1 LTR ERVL 62 239 -218 495 89 0 33 chr4 8227396 8227486 -194100861 + (GGA)n Simple_repeat Simple_repeat 3 89 0 446 329 162 22 chr4 8228513 8228612 -194099735 - L2 LINE L2 -26 3287 3203 255 31 0 0 chr4 8228612 8228644 -194099703 + (TG)n Simple_repeat Simple_repeat 2 33 0 446 329 162 22 chr4 8228644 8229515 -194098832 - L2 LINE L2 -110 3203 2174 240 337 30 10 chr4 8229647 8229748 -194098599 - MIR SINE MIR -113 149 47 330 345 61 39 chr4 8229770 8230080 -194098267 + L2 LINE L2 2955 3271 -1 183 80 0 0 chr4 8230102 8230127 -194098220 + (TGGG)n Simple_repeat Simple_repeat 3 27 0 300 235 18 24 chr4 8230181 8230347 -194098000 + (TGGA)n Simple_repeat Simple_repeat 4 168 0 762 146 35 0 chr4 8231011 8231182 -194097165 + (TGGA)n Simple_repeat Simple_repeat 2 178 0 494 160 34 117 chr4 8231411 8231617 -194096730 - MER53 DNA DNA 0 189 1 209 260 40 0 chr4 8232128 8232178 -194096169 - MER91A DNA MER1_type -126 70 19 282 305 48 0 chr4 8232195 8232300 -194096047 + L2 LINE L2 3199 3308 -5 602 203 25 0 chr4 8232304 8232467 -194095880 + (TGGA)n Simple_repeat Simple_repeat 3 169 0 581 165 28 23 chr4 8232519 8232695 -194095652 + (TGGA)n Simple_repeat Simple_repeat 4 180 0 851 133 17 17 chr4 8232740 8232920 -194095427 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 629 134 28 34 chr4 8232958 8233137 -194095210 + (TGGA)n Simple_repeat Simple_repeat 1 178 0 776 163 17 6 chr4 8233177 8233355 -194094992 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 297 132 26 26 chr4 8233367 8233443 -194094904 + (TGGA)n Simple_repeat Simple_repeat 2 77 0 591 189 26 13 chr4 8233486 8233715 -194094632 + (TGGA)n Simple_repeat Simple_repeat 1 232 0 582 239 161 63 chr4 8235583 8235838 -194092509 - MER58B DNA MER1_type 0 341 62 218 267 105 87 chr4 8237843 8238015 -194090332 - L2 LINE L2 -36 3236 3062 195 228 18 18 chr4 8238297 8238354 -194089993 - MIR SINE MIR -136 126 70 231 302 155 9 chr4 8238567 8238683 -194089664 + L2 LINE L2 3124 3256 -16 189 317 173 36 chr4 8238967 8239216 -194089131 - L2 LINE L2 -12 3301 3019 331 248 109 0 chr4 8239293 8239394 -194088953 + LTR16C LTR ERVL 202 313 -178 288 311 0 0 chr4 8239459 8239533 -194088814 + LTR16C LTR ERVL 418 491 0 249 253 154 62 chr4 8239609 8239771 -194088576 + MIR3 SINE MIR 11 187 -21 246 318 94 40 chr4 8239794 8239995 -194088352 + MIR SINE MIR 36 247 -15 229 323 141 0 chr4 8240716 8240815 -194087532 + MLT1J LTR MaLR 40 152 -359 253 271 32 101 chr4 8241814 8242002 -194086345 + L1MEd LINE L1 11 185 -5934 991 301 100 30 chr4 8242040 8242511 -194085836 + MLT1J LTR MaLR 2 505 -6 1935 131 67 62 chr4 8242663 8242883 -194085464 - THE1C LTR MaLR 0 375 151 2136 56 63 0 chr4 8242883 8243167 -194085180 + AluY SINE Alu 1 302 -9 1935 131 67 62 chr4 8243167 8243319 -194085028 - THE1C LTR MaLR -224 151 1 308 144 51 42 chr4 8243388 8243506 -194084841 + (CA)n Simple_repeat Simple_repeat 2 120 0 493 287 105 29 chr4 8243671 8244089 -194084258 + L1MEd LINE L1 621 1070 -5049 9400 57 8 108 chr4 8244273 8245795 -194082552 + SVA Other Other 1 1369 -17 197 33 33 0 chr4 8245799 8245829 -194082518 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1025 170 12 0 chr4 8245841 8246012 -194082335 - AluSg/x SINE Alu -6 306 134 1267 127 24 19 chr4 8246368 8246573 -194081774 + AluSq SINE Alu 68 273 -40 283 298 35 15 chr4 8246574 8246772 -194081575 + L1MEd LINE L1 2227 2428 -3701 381 93 0 0 chr4 8246783 8246837 -194081510 + (TG)n Simple_repeat Simple_repeat 2 55 0 646 142 35 0 chr4 8247156 8247269 -194081078 + MLT1D LTR MaLR 372 488 -17 2007 152 7 0 chr4 8247360 8247670 -194080677 + AluSx SINE Alu 1 312 0 286 194 41 71 chr4 8249155 8249215 -194079132 + MER92B LTR ERV1 157 214 -422 2273 105 0 0 chr4 8249215 8249521 -194078826 + AluSg SINE Alu 1 306 -4 286 194 41 71 chr4 8249521 8249558 -194078789 + MER92B LTR ERV1 214 251 -385 515 255 182 0 chr4 8249573 8249765 -194078582 + MER92B LTR ERV1 358 584 -52 272 211 92 0 chr4 8250346 8250422 -194077925 + MER92B LTR ERV1 546 628 -8 268 303 92 17 chr4 8251566 8251685 -194076662 + L2 LINE L2 3145 3272 0 2540 218 89 48 chr4 8251817 8252525 -194075822 + MER21B LTR ERV1 12 748 -115 263 388 18 24 chr4 8252600 8252770 -194075577 - MIR SINE MIR -82 180 12 287 313 62 23 chr4 8253355 8253483 -194074864 + L2 LINE L2 3139 3271 -1 665 279 32 23 chr4 8254077 8254296 -194074051 + MLT1G1 LTR MaLR 16 236 -359 634 147 0 0 chr4 8254296 8254391 -194073956 - AluJb SINE Alu -11 301 207 260 276 94 47 chr4 8254415 8254542 -194073805 + MLT1G1 LTR MaLR 423 555 0 246 32 0 0 chr4 8254633 8254664 -194073683 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 756 301 77 18 chr4 8254707 8255060 -194073287 - MLT1I LTR MaLR -13 396 13 22 0 0 0 chr4 8255215 8255237 -194073110 + AT_rich Low_complexity Low_complexity 1 22 0 290 266 8 32 chr4 8256218 8256342 -194072005 + GA-rich Low_complexity Low_complexity 1 121 0 719 196 0 0 chr4 8256583 8256716 -194071631 - MLT1D LTR MaLR -5 500 368 253 255 112 20 chr4 8256783 8256881 -194071466 + MIR SINE MIR 44 150 -58 646 246 78 6 chr4 8257601 8257780 -194070567 + MIR SINE MIR 36 227 -35 2272 103 0 0 chr4 8257781 8258091 -194070256 + AluSg SINE Alu 1 310 0 207 366 47 11 chr4 8258380 8258571 -194069776 + L2 LINE L2 2847 3044 -228 620 301 42 5 chr4 8260316 8260532 -194067815 - L3 LINE CR1 -60 1517 1294 3110 97 16 9 chr4 8260722 8261164 -194067183 + L1PA11 LINE L1 5727 6171 -3 325 308 62 82 chr4 8261188 8261396 -194066951 + HAL1 LINE L1 1086 1289 -1218 397 283 154 38 chr4 8261574 8261814 -194066533 + HAL1b LINE L1 452 719 -629 351 336 0 0 chr4 8262936 8263040 -194065307 + MIR3 SINE MIR 84 187 -21 192 303 84 67 chr4 8263298 8263417 -194064930 - L2 LINE L2 -4 3309 3189 257 245 134 28 chr4 8263431 8263601 -194064746 - MIR SINE MIR -57 205 16 2280 137 33 22 chr4 8263662 8264021 -194064326 - THE1B LTR MaLR 0 364 2 219 333 29 36 chr4 8264028 8264166 -194064181 + MIR3 SINE MIR 45 181 -27 217 191 0 21 chr4 8264455 8264502 -194063845 - L2 LINE L2 -5 3308 3263 215 228 0 0 chr4 8264784 8264841 -194063506 + T-rich Low_complexity Low_complexity 1 57 0 574 307 62 8 chr4 8265152 8265393 -194062954 + MIR SINE MIR 1 254 -8 366 291 118 0 chr4 8265411 8265538 -194062809 + L1ME4a LINE L1 5773 5914 -207 448 272 96 92 chr4 8266083 8266322 -194062025 - L1ME LINE L1 -592 5529 5290 448 266 55 0 chr4 8266391 8266519 -194061828 + MIR SINE MIR 74 208 -54 1710 155 13 26 chr4 8266972 8267276 -194061071 - AluSx SINE Alu -8 304 5 209 355 66 13 chr4 8267474 8267626 -194060721 + L2 LINE L2 2907 3066 -206 383 289 90 0 chr4 8267930 8268094 -194060253 + MIR SINE MIR 16 203 -5 25 51 0 0 chr4 8268199 8268238 -194060109 + AT_rich Low_complexity Low_complexity 1 39 0 411 294 18 65 chr4 8268653 8268823 -194059524 - MIR3 SINE MIR -14 194 33 1348 184 139 65 chr4 8269107 8269509 -194058838 - MSTB1 LTR MaLR 0 432 1 181 278 56 14 chr4 8270351 8270423 -194057924 + L2 LINE L2 2671 2745 -569 399 338 61 13 chr4 8270485 8270713 -194057634 + MER102b DNA MER1_type 102 340 -1 217 288 0 0 chr4 8270899 8270958 -194057389 + L2 LINE L2 2985 3043 -229 303 269 120 0 chr4 8271774 8271882 -194056465 + Charlie5 DNA MER1_type 7 127 -2485 * 1489 184 28 46 chr4 8271879 8272270 -194056077 + Charlie5 DNA MER1_type 2234 2617 0 452 174 0 10 chr4 8272824 8272922 -194055425 + CT-rich Low_complexity Low_complexity 1 97 0 262 315 196 4 chr4 8273347 8273607 -194054740 - L2 LINE L2 -137 3176 2867 1145 147 0 0 chr4 8273797 8273974 -194054373 + AluSg/x SINE Alu 136 312 0 307 235 20 20 chr4 8273990 8274092 -194054255 + Charlie7 DNA MER1_type 67 168 -2444 2149 284 86 25 chr4 8274150 8275261 -194053086 + Charlie7 DNA MER1_type 1428 2605 -7 204 100 25 0 chr4 8275873 8275913 -194052434 + L2 LINE L2 3014 3054 -218 196 320 0 13 chr4 8276084 8276162 -194052185 + L2 LINE L2 2909 2985 -287 2150 99 0 17 chr4 8277947 8278249 -194050098 - AluSg SINE Alu -13 297 1 2024 214 55 88 chr4 8278714 8279313 -194049034 + MER119 DNA MER1_type 5 583 0 5306 181 33 9 chr4 8279340 8280391 -194047956 + L1MC3 LINE L1 6708 7783 -2 252 200 92 0 chr4 8280518 8280583 -194047764 + MLT1J1 LTR MaLR 66 136 -310 247 215 92 0 chr4 8280608 8280673 -194047674 + MLT1J1 LTR MaLR 66 136 -310 353 287 25 0 chr4 8280698 8280822 -194047525 + MLT1J2 LTR MaLR 67 194 -215 204 308 25 17 chr4 8281335 8281455 -194046892 + CT-rich Low_complexity Low_complexity 3 123 0 278 202 0 45 chr4 8282271 8282360 -194045987 + (CACCAT)n Simple_repeat Simple_repeat 2 86 0 655 116 0 101 chr4 8282371 8282570 -194045777 + (CACCAT)n Simple_repeat Simple_repeat 1 179 0 655 116 0 101 chr4 8282584 8282783 -194045564 + (CACCAT)n Simple_repeat Simple_repeat 1 179 0 340 97 32 0 chr4 8282795 8282857 -194045490 + (CACCAT)n Simple_repeat Simple_repeat 5 68 0 688 176 23 6 chr4 8282868 8283044 -194045303 + (CACCAT)n Simple_repeat Simple_repeat 1 179 0 208 107 0 0 chr4 8283044 8283072 -194045275 + (CAT)n Simple_repeat Simple_repeat 1 28 0 318 317 137 22 chr4 8283581 8283764 -194044583 - MIR SINE MIR -6 256 53 608 310 70 0 chr4 8283808 8284021 -194044326 + MIR SINE MIR 35 262 0 220 98 0 59 chr4 8285111 8285162 -194043185 + (TTCC)n Simple_repeat Simple_repeat 4 51 0 249 318 163 20 chr4 8285397 8285796 -194042551 + L2 LINE L2 2817 3272 0 599 365 73 0 chr4 8285856 8286212 -194042135 + L3 LINE CR1 767 1148 -429 581 324 14 19 chr4 8286225 8286438 -194041909 + MIR SINE MIR 8 219 -43 2018 137 67 50 chr4 8287653 8287941 -194040406 + THE1B LTR MaLR 1 298 -66 1954 142 0 13 chr4 8287941 8288251 -194040096 + AluSx SINE Alu 6 311 -1 2018 137 67 50 chr4 8288251 8288320 -194040027 + THE1B LTR MaLR 298 364 0 251 175 140 0 chr4 8288380 8288437 -194039910 - MIR SINE MIR -117 145 81 427 176 0 0 chr4 8288861 8288935 -194039412 + MIR SINE MIR 79 152 -110 2908 235 46 51 chr4 8291189 8291228 -194037119 - L1ME1 LINE L1 -3 6163 6125 2031 101 0 29 chr4 8291228 8291544 -194036803 - AluSq SINE Alu -6 307 1 2908 235 46 51 chr4 8291544 8292403 -194035944 - L1ME1 LINE L1 -41 6125 5263 189 0 0 0 chr4 8292403 8292424 -194035923 + (TA)n Simple_repeat Simple_repeat 2 22 0 2218 103 3 13 chr4 8292424 8292736 -194035611 - AluSx SINE Alu -3 309 1 2908 235 46 51 chr4 8292736 8293053 -194035294 - L1ME1 LINE L1 -902 5264 4940 600 14 0 0 chr4 8293053 8293122 -194035225 + (TTTC)n Simple_repeat Simple_repeat 3 71 0 2908 235 46 51 chr4 8293122 8293168 -194035179 - L1ME1 LINE L1 -1226 4940 4895 348 183 175 8 chr4 8294816 8294936 -194033411 + MIR SINE MIR 92 231 -31 343 275 73 28 chr4 8295131 8295212 -194033135 - L1ME4a LINE L1 -1 6120 6044 2259 108 0 0 chr4 8295212 8295519 -194032828 + AluSx SINE Alu 1 307 -5 343 275 73 28 chr4 8295519 8295615 -194032732 - L1ME4a LINE L1 -77 6044 5935 307 305 152 48 chr4 8296008 8296218 -194032129 - L1ME4a LINE L1 -203 5918 5687 2356 111 43 25 chr4 8297234 8297602 -194030745 - THE1C LTR MaLR 0 375 1 236 318 122 0 chr4 8298494 8298601 -194029746 - MIR SINE MIR -80 182 63 313 209 118 18 chr4 8299611 8299721 -194028626 - MER113 DNA MER1_type? -302 219 99 2252 82 7 0 chr4 8299722 8300015 -194028332 + AluSg SINE Alu 6 300 -10 954 203 45 21 chr4 8301761 8302003 -194026344 - ORSL DNA AcHobo -20 255 8 235 364 79 0 chr4 8303126 8303266 -194025081 + MIR SINE MIR 87 237 -25 602 232 3 3 chr4 8304988 8305304 -194023043 + (CA)n Simple_repeat Simple_repeat 1 316 0 503 239 6 0 chr4 8305318 8305485 -194022862 + (CA)n Simple_repeat Simple_repeat 1 168 0 545 247 0 4 chr4 8305499 8305776 -194022571 + (CA)n Simple_repeat Simple_repeat 1 275 0 378 271 0 0 chr4 8305790 8305930 -194022417 + (CA)n Simple_repeat Simple_repeat 1 140 0 560 240 6 0 chr4 8305946 8306125 -194022222 + (CA)n Simple_repeat Simple_repeat 1 180 0 629 234 0 6 chr4 8306139 8306461 -194021886 + (CA)n Simple_repeat Simple_repeat 1 319 0 228 262 0 0 chr4 8306985 8307046 -194021301 - L1MB3 LINE L1 -1 6182 6122 241 311 66 0 chr4 8307884 8308006 -194020341 - L2 LINE L2 0 3272 3143 198 195 0 0 chr4 8309409 8309450 -194018897 - MIR SINE MIR -113 149 109 261 326 47 0 chr4 8310053 8310139 -194018208 + MIR3 SINE MIR 97 186 -22 574 250 8 15 chr4 8310320 8310452 -194017895 - MER45A DNA AcHobo -2 176 46 260 291 64 81 chr4 8311120 8311292 -194017055 + MIR SINE MIR 46 214 -48 577 315 7 0 chr4 8311818 8311964 -194016383 + MIR SINE MIR 8 154 -108 417 328 88 46 chr4 8312605 8312910 -194015437 - L2 LINE L2 -25 3247 2930 187 233 167 0 chr4 8313200 8313260 -194015087 + MIR3 SINE MIR 125 194 -14 207 0 0 0 chr4 8314014 8314037 -194014310 + (TGAA)n Simple_repeat Simple_repeat 4 26 0 316 265 69 0 chr4 8316668 8316770 -194011577 + MIR SINE MIR 117 225 -37 327 302 88 39 chr4 8316888 8317093 -194011254 - L1MB7 LINE L1 -163 6021 5807 226 264 23 93 chr4 8317367 8317496 -194010851 - L1MB7 LINE L1 -672 5449 5330 530 272 92 17 chr4 8318226 8318399 -194009948 - MER5A DNA MER1_type 0 189 4 427 314 31 54 chr4 8318436 8318736 -194009611 + L2 LINE L2 2776 3068 -245 252 0 0 0 chr4 8318802 8318830 -194009517 + (CCA)n Simple_repeat Simple_repeat 3 30 0 1086 160 0 0 chr4 8318944 8319735 -194008612 + (TGGA)n Simple_repeat Simple_repeat 1 791 0 384 321 71 9 chr4 8321052 8321264 -194007083 - L1ME LINE L1 -645 5517 5293 8053 205 55 12 chr4 8322086 8322304 -194006043 - L1PB4 LINE L1 -4 6344 6137 207 0 0 0 chr4 8322304 8322327 -194006020 + (TA)n Simple_repeat Simple_repeat 2 24 0 8053 205 55 12 chr4 8322327 8327528 -194000819 - L1PB4 LINE L1 -211 6137 772 3897 167 14 0 chr4 8327538 8328238 -194000109 - L1PB4 LINE L1 -4618 710 1 241 223 98 89 chr4 8328778 8328890 -193999457 + MIR SINE MIR 105 217 -45 2371 92 0 0 chr4 8329276 8329581 -193998766 - AluSc SINE Alu -4 305 1 369 320 4 17 chr4 8329674 8329871 -193998476 + CT-rich Low_complexity Low_complexity 1 194 0 246 171 26 13 chr4 8329878 8329954 -193998393 + (TCCA)n Simple_repeat Simple_repeat 1 77 0 2045 128 20 0 chr4 8331719 8332016 -193996331 - AluSx SINE Alu -9 303 1 277 354 33 39 chr4 8332028 8332209 -193996138 - L1ME LINE L1 -302 5819 5640 232 359 39 55 chr4 8332472 8332781 -193995566 - L2 LINE L2 -43 3229 2926 1767 202 35 86 chr4 8332781 8333429 -193994918 - LTR6A LTR ERV1 0 564 1 1608 231 53 45 chr4 8333499 8333993 -193994354 - MLT1D LTR MaLR -7 498 1 187 312 117 0 chr4 8334099 8334176 -193994171 - L2 LINE L2 -8 3305 3220 356 352 120 13 chr4 8334237 8334606 -193993741 - L2 LINE L2 -227 3045 2635 351 289 0 12 chr4 8334797 8335298 -193993049 + (CA)n Simple_repeat Simple_repeat 1 494 0 322 240 53 93 chr4 8335806 8335956 -193992391 + MIR3 SINE MIR 31 174 -34 413 342 62 65 chr4 8336474 8336810 -193991537 - L2 LINE L2 -20 3252 2918 1423 241 78 37 chr4 8337000 8337511 -193990836 - MLT1H LTR MaLR 0 549 18 589 252 43 5 chr4 8338151 8338537 -193989810 - MLT1J2 LTR MaLR -7 443 15 379 249 163 11 chr4 8338549 8338731 -193989616 + MIR SINE MIR 6 214 -48 545 272 121 13 chr4 8339650 8339874 -193988473 + MIR SINE MIR 14 261 -1 203 257 27 81 chr4 8340282 8340356 -193987991 + MIR3 SINE MIR 88 157 -51 322 286 169 0 chr4 8341037 8341215 -193987132 + L2 LINE L2 2562 2769 -545 288 318 28 9 chr4 8341615 8341722 -193986625 + L2 LINE L2 3154 3262 -51 810 219 12 0 chr4 8341754 8341914 -193986433 - FRAM SINE Alu -17 159 1 679 210 0 80 chr4 8342105 8342281 -193986066 + MER63 DNA MER1_type 1 788 -48 301 262 28 21 chr4 8342525 8342634 -193985713 + MIR SINE MIR 63 171 -37 213 318 15 0 chr4 8342837 8342903 -193985444 - MIR SINE MIR -77 131 65 234 188 21 0 chr4 8344247 8344295 -193984052 - MIR3 SINE MIR -48 160 112 630 192 0 0 chr4 8344785 8344884 -193983463 + FLAM_C SINE Alu 12 110 -33 357 366 36 5 chr4 8344942 8345136 -193983211 - MIR SINE MIR -3 259 60 1193 195 174 50 chr4 8345889 8346268 -193982079 - MSTB LTR MaLR 0 426 1 260 274 189 37 chr4 8346671 8347233 -193981114 - L2 LINE L2 -1 3271 2632 191 259 19 0 chr4 8347366 8347420 -193980927 - MIR SINE MIR -119 143 89 506 269 39 19 chr4 8348139 8348295 -193980052 + MIR SINE MIR 70 228 -34 243 0 0 0 chr4 8348696 8348723 -193979624 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 204 309 24 24 chr4 8349305 8349389 -193978958 - L2 LINE L2 -13 3259 3176 357 233 29 0 chr4 8350727 8350830 -193977517 - MIR SINE MIR -62 146 88 341 338 159 7 chr4 8351466 8351611 -193976736 + MIR SINE MIR 4 170 -92 603 279 29 113 chr4 8354919 8355335 -193973012 - L1ME3A LINE L1 -283 5887 5507 1713 236 158 61 chr4 8355353 8356055 -193972292 - MER21B LTR ERV1 -81 782 13 1132 264 138 114 chr4 8356243 8357493 -193970854 - L1MC4 LINE L1 -124 7918 6623 180 0 0 0 chr4 8357493 8357513 -193970834 + (GGAA)n Simple_repeat Simple_repeat 4 23 0 1132 264 138 114 chr4 8357513 8357791 -193970556 - L1MC4 LINE L1 -1419 6623 6353 615 306 96 16 chr4 8357871 8358234 -193970113 - L1ME3A LINE L1 -139 6031 5640 394 117 0 164 chr4 8360090 8360304 -193968043 + (CCCCCA)n Simple_repeat Simple_repeat 2 180 0 225 104 0 130 chr4 8360354 8360431 -193967916 + (CCCCCA)n Simple_repeat Simple_repeat 3 69 0 329 266 63 28 chr4 8360721 8360864 -193967483 - MLT1K LTR MaLR -369 219 72 184 213 21 21 chr4 8361437 8361484 -193966863 + L2 LINE L2 3214 3260 -12 426 39 0 0 chr4 8361898 8361950 -193966397 + (TG)n Simple_repeat Simple_repeat 2 53 0 236 338 23 30 chr4 8362049 8362182 -193966165 + MIR3 SINE MIR 13 144 -64 309 320 70 66 chr4 8363089 8363345 -193965002 - L2 LINE L2 -5 3267 3011 225 335 50 19 chr4 8365236 8365397 -193962950 + HAL1b LINE L1 482 647 -701 188 274 286 24 chr4 8367373 8367621 -193960726 - L2 LINE L2 -81 3232 2920 289 297 239 7 chr4 8367816 8367971 -193960376 - L2 LINE L2 -541 2773 2583 350 343 119 21 chr4 8367981 8368267 -193960080 - L2 LINE L2 -870 2444 2131 562 211 29 0 chr4 8368447 8368622 -193959725 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 856 163 12 0 chr4 8368649 8368821 -193959526 + (TCCA)n Simple_repeat Simple_repeat 2 175 0 264 320 16 8 chr4 8369105 8369227 -193959120 + MIR SINE MIR 94 216 -46 242 273 0 0 chr4 8369696 8369751 -193958596 - MIR SINE MIR -68 140 86 998 213 63 14 chr4 8370012 8370219 -193958128 - MER20 DNA MER1_type 0 219 3 454 248 51 15 chr4 8371432 8371569 -193956778 + MIR SINE MIR 46 187 -75 860 177 6 0 chr4 8373188 8373363 -193954984 + (TCCA)n Simple_repeat Simple_repeat 4 179 0 839 201 3 0 chr4 8373401 8373759 -193954588 + (TCCA)n Simple_repeat Simple_repeat 1 359 0 242 380 124 31 chr4 8373792 8374244 -193954103 - L2 LINE L2 0 3313 2820 456 236 24 0 chr4 8374291 8374414 -193953933 - MER58C DNA MER1_type 0 215 90 1251 225 104 12 chr4 8374423 8374846 -193953501 - MLT1C LTR MaLR 0 467 6 282 368 31 25 chr4 8375063 8375226 -193953121 - MIR SINE MIR -10 252 89 265 279 103 37 chr4 8375430 8375566 -193952781 - L3 LINE CR1 -89 1488 1344 814 221 124 0 chr4 8376116 8376374 -193951973 - MLT1C LTR MaLR -153 314 25 201 299 42 45 chr4 8376404 8376551 -193951796 - MIR SINE MIR -94 114 9 732 171 6 23 chr4 8377298 8377474 -193950873 + (ATGGTG)n Simple_repeat Simple_repeat 4 176 0 300 290 0 0 chr4 8377448 8377572 -193950775 + (TGG)n Simple_repeat Simple_repeat 1 124 0 * 610 208 17 11 chr4 8377572 8377750 -193950597 + (ATGGTG)n Simple_repeat Simple_repeat 1 179 0 2035 105 0 20 chr4 8379583 8379877 -193948470 + AluJb SINE Alu 23 310 -2 504 328 25 20 chr4 8380047 8380309 -193948038 + MIR SINE MIR 2 262 0 1552 204 40 3 chr4 8381012 8381118 -193947229 + AluJo SINE Alu 1 102 -210 2030 134 23 7 chr4 8381118 8381425 -193946922 - AluSx SINE Alu 0 312 1 1552 204 40 3 chr4 8381425 8381617 -193946730 + AluJo SINE Alu 102 310 -2 318 257 119 9 chr4 8381640 8381749 -193946598 + L1M4 LINE L1 2673 2793 -3353 397 278 98 40 chr4 8382026 8382199 -193946148 + MIR SINE MIR 68 250 -12 347 287 130 0 chr4 8383629 8383737 -193944610 - L2 LINE L2 -1 3312 3191 1103 193 44 139 chr4 8383750 8384159 -193944188 + MLT1A2 LTR MaLR 1 370 -4 560 277 113 27 chr4 8384170 8384499 -193943848 - L2 LINE L2 -129 3184 2828 544 278 44 15 chr4 8384864 8385069 -193943278 + MLT1J2 LTR MaLR 240 450 0 186 43 0 0 chr4 8385725 8385748 -193942599 + (TC)n Simple_repeat Simple_repeat 1 23 0 215 299 51 26 chr4 8385868 8385985 -193942362 - MIR SINE MIR -72 136 17 238 273 0 0 chr4 8386885 8386940 -193941407 - L2 LINE L2 -10 3262 3208 201 265 118 0 chr4 8387437 8387505 -193940842 + MIR3 SINE MIR 92 167 -41 274 303 107 0 chr4 8387991 8388113 -193940234 + MIR3 SINE MIR 29 163 -45 314 279 81 62 chr4 8388119 8388280 -193940067 - L2 LINE L2 0 3272 3109 208 231 26 0 chr4 8388393 8388471 -193939876 + (TGGA)n Simple_repeat Simple_repeat 1 80 0 623 225 21 0 chr4 8388490 8388770 -193939577 + (TGGA)n Simple_repeat Simple_repeat 1 285 0 204 178 0 44 chr4 8388771 8388816 -193939531 + GA-rich Low_complexity Low_complexity 3 45 0 2168 113 0 3 chr4 8391593 8391903 -193936444 + AluSq SINE Alu 1 309 -4 461 296 39 82 chr4 8391909 8392115 -193936232 + MIR SINE MIR 66 262 0 604 304 68 27 chr4 8392815 8393035 -193935312 + MIR SINE MIR 13 241 -21 26 30 0 0 chr4 8393374 8393407 -193934940 + AT_rich Low_complexity Low_complexity 1 33 0 303 311 0 49 chr4 8393426 8393548 -193934799 - L2 LINE L2 -1 3312 3197 3144 222 34 4 chr4 8393677 8394502 -193933845 + L1M4 LINE L1 2412 3261 -2885 194 283 19 0 chr4 8394806 8394859 -193933488 - MIR SINE MIR -65 143 90 180 359 39 10 chr4 8394977 8395080 -193933267 + MIR3 SINE MIR 97 202 -6 316 248 204 0 chr4 8396761 8396874 -193931473 - MIR SINE MIR -119 143 8 309 357 8 16 chr4 8397028 8397157 -193931190 - MIR SINE MIR -118 144 17 238 264 35 0 chr4 8398054 8398141 -193930206 - MER45 DNA AcHobo -1466 115 26 190 227 68 0 chr4 8398242 8398286 -193930061 + L2 LINE L2 3244 3290 -23 2261 206 27 2 chr4 8398311 8398749 -193929598 + L1MB5 LINE L1 5718 6166 -8 372 298 128 30 chr4 8398967 8399202 -193929145 - L2 LINE L2 -109 3163 2906 283 241 60 0 chr4 8400035 8400118 -193928229 - MER81 DNA DNA 0 114 27 332 298 0 10 chr4 8400214 8400318 -193928029 + MIR SINE MIR 45 147 -61 214 316 13 13 chr4 8400415 8400494 -193927853 + MIR SINE MIR 67 145 -117 1410 189 79 16 chr4 8400678 8401044 -193927303 + MLT1C LTR MaLR 3 391 -76 22 56 0 0 chr4 8401711 8401747 -193926600 + AT_rich Low_complexity Low_complexity 1 36 0 224 297 203 7 chr4 8401812 8401950 -193926397 + MIR3 SINE MIR 3 167 -41 297 51 0 0 chr4 8401994 8402033 -193926314 + (TCCA)n Simple_repeat Simple_repeat 1 39 0 931 71 20 45 chr4 8402045 8402368 -193925979 + (TCCA)n Simple_repeat Simple_repeat 1 315 0 377 258 129 12 chr4 8402878 8403041 -193925306 + L2 LINE L2 2875 3056 -257 196 275 12 62 chr4 8403222 8403302 -193925045 + MIR3 SINE MIR 127 202 -6 310 331 128 12 chr4 8403426 8403598 -193924749 - MIR SINE MIR -46 216 25 200 360 27 36 chr4 8404626 8404737 -193923610 + MIR SINE MIR 35 144 -118 282 301 109 65 chr4 8405410 8405812 -193922535 + L2 LINE L2 2810 3229 -43 216 192 19 39 chr4 8405908 8405960 -193922387 - L2 LINE L2 -14 3258 3208 250 286 134 9 chr4 8406210 8406322 -193922025 - MER96 DNA MER1_type? -39 136 11 189 299 41 62 chr4 8406857 8406954 -193921393 + MIR3 SINE MIR 88 182 -26 316 309 158 29 chr4 8407426 8407628 -193920719 - MIR SINE MIR -43 219 3 196 231 0 0 chr4 8408322 8408361 -193919986 + L2 LINE L2 3263 3301 -12 222 362 51 22 chr4 8408469 8408607 -193919740 + MIR3 SINE MIR 5 146 -62 334 220 66 0 chr4 8408678 8408769 -193919578 + MER5A DNA MER1_type 10 106 -83 187 267 287 0 chr4 8408703 8408804 -193919543 - MER5A DNA MER1_type -24 165 36 * 190 332 72 9 chr4 8409209 8409432 -193918915 + L2 LINE L2 2738 2974 -340 211 336 60 0 chr4 8409469 8409585 -193918762 + L2 LINE L2 3141 3263 -9 182 331 83 53 chr4 8409614 8409783 -193918564 + MIR SINE MIR 45 218 -44 1583 202 80 36 chr4 8410091 8410506 -193917841 + MLT1D LTR MaLR 1 433 -72 532 216 16 0 chr4 8410511 8410636 -193917711 - MER47A DNA MER2_type 0 366 240 530 232 0 0 chr4 8410637 8410749 -193917598 - MER47A DNA MER2_type -254 112 1 351 203 0 0 chr4 8410749 8410818 -193917529 + MLT1D LTR MaLR 437 505 0 417 290 36 67 chr4 8411953 8412110 -193916237 + MIR SINE MIR 45 208 -54 2120 114 0 31 chr4 8412110 8412427 -193915920 + AluSx SINE Alu 1 307 -5 417 290 36 67 chr4 8412427 8412463 -193915884 + MIR SINE MIR 208 244 -18 743 263 91 45 chr4 8412934 8413330 -193915017 + MLT1C LTR MaLR 54 467 0 220 246 87 43 chr4 8414337 8414475 -193913872 + L2 LINE L2 2921 3064 -208 205 378 64 13 chr4 8414685 8414841 -193913506 - L3 LINE CR1 -7 1570 1407 198 0 0 0 chr4 8415024 8415046 -193913301 + (TTCA)n Simple_repeat Simple_repeat 3 24 0 223 254 0 17 chr4 8415121 8415180 -193913167 - MIR SINE MIR -56 152 95 211 327 84 0 chr4 8415448 8415555 -193912792 - MIR SINE MIR -145 117 2 458 317 49 22 chr4 8416265 8416448 -193911899 + MIR SINE MIR 2 189 -73 197 330 152 35 chr4 8418513 8418931 -193909416 + L2 LINE L2 2738 3268 -45 601 220 6 19 chr4 8418931 8419081 -193909266 - L1 LINE L1 -1764 4382 4233 2700 137 2 5 chr4 8419081 8419495 -193908852 + L1PB3 LINE L1 5734 6147 -7 332 167 14 0 chr4 8419526 8419598 -193908749 + GA-rich Low_complexity Low_complexity 3 75 0 829 161 0 0 chr4 8420290 8420427 -193907920 - AluJo SINE Alu -175 137 1 1758 176 0 29 chr4 8420719 8421025 -193907322 - AluJo SINE Alu -15 297 1 608 210 105 6 chr4 8421099 8421280 -193907067 + L1MCc LINE L1 1167 1365 -5058 * 1783 236 31 5 chr4 8421273 8421718 -193906629 + L1ME1 LINE L1 5705 6161 -5 300 291 220 6 chr4 8421798 8421980 -193906367 - MIR SINE MIR -21 241 21 488 295 84 40 chr4 8422135 8422362 -193905985 + MIR SINE MIR 22 258 -4 317 154 0 0 chr4 8422489 8422541 -193905806 - MLT1B LTR MaLR -317 73 22 206 298 0 0 chr4 8423858 8423905 -193904442 - MIR SINE MIR -142 120 74 204 296 0 102 chr4 8424062 8424160 -193904187 + L2 LINE L2 3185 3272 0 833 139 11 11 chr4 8424183 8424363 -193903984 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 210 138 0 125 chr4 8424756 8424836 -193903511 + (CCCCCA)n Simple_repeat Simple_repeat 3 72 0 384 98 0 152 chr4 8424875 8425039 -193903308 + (CCCCCA)n Simple_repeat Simple_repeat 3 141 0 1269 249 64 23 chr4 8425266 8425703 -193902644 - MLT1C LTR MaLR -6 461 7 1023 264 162 26 chr4 8426631 8427415 -193900932 - L2 LINE L2 -8 3305 2421 260 258 16 32 chr4 8428466 8428590 -193899757 + CT-rich Low_complexity Low_complexity 3 124 0 204 40 0 0 chr4 8428660 8428685 -193899662 + (GGGGA)n Simple_repeat Simple_repeat 2 26 0 320 130 19 0 chr4 8428875 8428929 -193899418 - MLT1C LTR MaLR -409 58 4 390 173 13 0 chr4 8429597 8429672 -193898675 - MLT1C LTR MaLR -69 398 323 213 265 0 0 chr4 8429912 8429961 -193898386 - MIR SINE MIR -111 151 103 345 189 18 18 chr4 8430885 8430996 -193897351 + CT-rich Low_complexity Low_complexity 3 113 0 873 175 11 23 chr4 8431009 8431464 -193896883 + CT-rich Low_complexity Low_complexity 1 449 0 345 310 40 38 chr4 8431472 8431635 -193896712 + MIR SINE MIR 5 180 -62 861 175 2 0 chr4 8432770 8433229 -193895118 + (TGAG)n Simple_repeat Simple_repeat 1 460 0 267 234 0 0 chr4 8433243 8433320 -193895027 + (TGAG)n Simple_repeat Simple_repeat 3 79 0 195 42 0 0 chr4 8433348 8433372 -193894975 + (CAG)n Simple_repeat Simple_repeat 1 24 0 183 299 98 43 chr4 8433741 8433905 -193894442 - L2 LINE L2 -520 2794 2622 2142 123 0 3 chr4 8434213 8434514 -193893833 - AluSx SINE Alu -12 300 1 349 318 73 7 chr4 8434679 8434830 -193893517 + MIR SINE MIR 32 192 -70 264 291 0 44 chr4 8434952 8435134 -193893213 + (TTGGGG)n Simple_repeat Simple_repeat 2 175 0 303 293 0 37 chr4 8435236 8435566 -193892781 + (TTGGGG)n Simple_repeat Simple_repeat 1 317 0 222 263 0 65 chr4 8435776 8435962 -193892385 + (TTGGGG)n Simple_repeat Simple_repeat 2 175 0 219 296 12 19 chr4 8435912 8436074 -193892273 + (GGGTG)n Simple_repeat Simple_repeat 2 162 0 * 208 274 0 65 chr4 8436006 8436192 -193892155 + (TTGGGG)n Simple_repeat Simple_repeat 2 175 0 * 260 278 11 33 chr4 8436144 8436324 -193892023 + (GGGTG)n Simple_repeat Simple_repeat 2 177 0 * 313 255 0 54 chr4 8436218 8436402 -193891945 + (TTGGGG)n Simple_repeat Simple_repeat 2 175 0 235 311 0 33 chr4 8436316 8436496 -193891851 + (TTAGGG)n Simple_repeat Simple_repeat 2 175 0 * 279 296 3 35 chr4 8436708 8437055 -193891292 + (TTGGGG)n Simple_repeat Simple_repeat 1 335 0 318 308 0 27 chr4 8437249 8437590 -193890757 + (TTGGGG)n Simple_repeat Simple_repeat 1 331 0 284 290 0 32 chr4 8437618 8437773 -193890574 + (TTGGGG)n Simple_repeat Simple_repeat 2 151 0 212 374 0 0 chr4 8437712 8437886 -193890461 + (TTAGGG)n Simple_repeat Simple_repeat 2 175 0 * 2116 171 45 3 chr4 8437979 8438353 -193889994 - MLT1B LTR MaLR 0 390 1 252 0 0 0 chr4 8438376 8438404 -193889943 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 190 333 111 47 chr4 8438880 8439051 -193889296 + MIR SINE MIR 8 189 -73 210 278 93 62 chr4 8439097 8439194 -193889153 + L2 LINE L2 3212 3311 -2 418 332 124 13 chr4 8440631 8440938 -193887409 - L2 LINE L2 0 3272 2932 259 312 35 30 chr4 8441129 8441270 -193887077 + MIR SINE MIR 14 149 -59 319 267 30 20 chr4 8441415 8441516 -193886831 + MIR SINE MIR 98 199 -63 339 331 48 0 chr4 8444248 8444372 -193883975 + MIR SINE MIR 29 158 -104 239 316 25 0 chr4 8444647 8444726 -193883621 + L2 LINE L2 3173 3253 -19 273 269 234 28 chr4 8445048 8445193 -193883154 - MIR SINE MIR -80 182 8 180 262 90 107 chr4 8445293 8445415 -193882932 + MIR SINE MIR 28 147 -115 357 329 79 73 chr4 8446040 8446629 -193881718 - L2 LINE L2 0 3272 2649 223 261 77 0 chr4 8447026 8447091 -193881256 + MIR SINE MIR 123 192 -70 408 286 64 14 chr4 8447864 8448004 -193880343 - MIR SINE MIR -83 179 33 508 233 78 49 chr4 8448140 8448471 -193879876 - MLT1J2 LTR MaLR -23 427 46 197 357 47 0 chr4 8448567 8448696 -193879651 - L2 LINE L2 -620 2694 2560 197 336 219 0 chr4 8449674 8449802 -193878545 + MIR3 SINE MIR 45 200 -8 245 389 108 32 chr4 8449969 8450311 -193878036 - L3 LINE CR1 -253 1324 957 735 269 45 14 chr4 8450869 8451092 -193877255 + MIR SINE MIR 32 261 -1 738 202 0 0 chr4 8451104 8451282 -193877065 + (TGG)n Simple_repeat Simple_repeat 2 179 0 240 67 0 0 chr4 8451282 8451312 -193877035 + (ATG)n Simple_repeat Simple_repeat 1 30 0 763 244 36 0 chr4 8451619 8451787 -193876560 - MER5B DNA MER1_type -4 174 1 225 247 14 41 chr4 8452085 8452158 -193876189 - MIR SINE MIR -65 143 73 609 209 0 4 chr4 8452160 8452414 -193875933 + (TCCA)n Simple_repeat Simple_repeat 1 252 0 208 333 48 0 chr4 8452834 8452897 -193875450 + L2 LINE L2 3233 3298 -15 328 306 60 16 chr4 8452920 8453103 -193875244 - L2 LINE L2 -190 3123 2933 190 320 117 52 chr4 8454202 8454433 -193873914 - L2 LINE L2 -121 3151 2906 203 293 0 0 chr4 8455470 8455528 -193872819 - L2 LINE L2 -335 2978 2921 274 301 32 49 chr4 8455868 8455991 -193872356 + L2 LINE L2 2634 2754 -560 279 269 23 46 chr4 8456051 8456181 -193872166 + L2 LINE L2 3133 3259 -13 261 119 0 0 chr4 8456181 8456223 -193872124 + (TGAA)n Simple_repeat Simple_repeat 1 42 0 1286 238 121 12 chr4 8456737 8457158 -193871189 - MLT1C LTR MaLR 0 467 1 188 135 27 0 chr4 8457705 8457742 -193870605 + (CA)n Simple_repeat Simple_repeat 1 38 0 948 206 127 57 chr4 8458251 8458567 -193869780 - MLT2C1 LTR ERVL -47 350 13 185 333 61 27 chr4 8458722 8458869 -193869478 + L2 LINE L2 3045 3196 -117 207 177 122 68 chr4 8459314 8459461 -193868886 + (GCTG)n Simple_repeat Simple_repeat 3 157 0 410 352 116 0 chr4 8460300 8460618 -193867729 + L2 LINE L2 2957 3311 -2 270 326 12 0 chr4 8460639 8460725 -193867622 + L2 LINE L2 3184 3270 -2 1076 255 28 31 chr4 8460996 8461545 -193866802 - MER77 LTR ERV1 -7 598 1 283 265 39 29 chr4 8461847 8461949 -193866398 - L2 LINE L2 -20 3252 3150 206 269 90 0 chr4 8462511 8462589 -193865758 + MER91A DNA MER1_type 21 105 -91 1189 230 90 35 chr4 8464959 8465123 -193863224 + MLT1C LTR MaLR 1 155 -312 2374 66 0 10 chr4 8465123 8465427 -193862920 + AluY SINE Alu 1 301 -10 1189 230 90 35 chr4 8465427 8465687 -193862660 + MLT1C LTR MaLR 155 458 -9 1444 54 0 16 chr4 8465829 8466015 -193862332 + L1PA8 LINE L1 5990 6172 0 674 257 138 20 chr4 8468706 8469137 -193859210 - MLT1D LTR MaLR 0 390 2 272 230 11 81 chr4 8471128 8471215 -193857132 - L2 LINE L2 0 3272 3192 189 296 0 0 chr4 8473064 8473108 -193855239 + MIR SINE MIR 219 262 0 245 327 82 62 chr4 8473229 8473678 -193854669 + L2 LINE L2 2811 3268 -4 237 261 0 31 chr4 8473745 8473810 -193854537 + MIR3 SINE MIR 96 158 -50 1644 194 84 19 chr4 8474360 8474788 -193853559 - L1MA8 LINE L1 -278 6013 5558 540 268 76 98 chr4 8475048 8475496 -193852851 - MLT1J2 LTR MaLR -10 440 3 273 356 70 0 chr4 8475636 8475751 -193852596 + MIR3 SINE MIR 47 169 -39 414 114 0 0 chr4 8476140 8476210 -193852137 + (CA)n Simple_repeat Simple_repeat 2 71 0 448 365 88 55 chr4 8476240 8476482 -193851865 - L1ME4a LINE L1 -158 5963 5704 1908 171 44 22 chr4 8476482 8476844 -193851503 - MLT1A2 LTR MaLR 0 374 5 448 365 88 55 chr4 8476844 8476963 -193851384 - L1ME4a LINE L1 -417 5704 5590 320 307 63 0 chr4 8477524 8477651 -193850696 + MIR SINE MIR 48 182 -80 274 264 110 11 chr4 8477755 8477846 -193850501 - MIR3 SINE MIR -3 205 106 257 343 97 27 chr4 8478356 8478533 -193849814 - MIR SINE MIR -33 175 3 265 271 0 0 chr4 8478568 8478638 -193849709 + C-rich Low_complexity Low_complexity 1 70 0 263 295 103 12 chr4 8479147 8479340 -193849007 - MIR3 SINE MIR -44 218 2 503 326 45 22 chr4 8479768 8479992 -193848355 - MIR SINE MIR -16 246 18 209 279 0 7 chr4 8481229 8481365 -193846982 + (TG)n Simple_repeat Simple_repeat 1 135 0 186 326 141 11 chr4 8482139 8482231 -193846116 - L2 LINE L2 -5 3267 3164 257 312 21 71 chr4 8484790 8484931 -193843416 - MIR3 SINE MIR -71 137 4 383 133 76 0 chr4 8485582 8485687 -193842660 + (CAGAGA)n Simple_repeat Simple_repeat 2 114 0 387 340 98 16 chr4 8486553 8486747 -193841600 - MIR SINE MIR -21 241 32 532 229 48 101 chr4 8486750 8486938 -193841409 + MER45A DNA AcHobo 1 178 0 237 325 95 16 chr4 8487687 8487813 -193840534 + MIR SINE MIR 108 243 -19 437 359 30 0 chr4 8487861 8488059 -193840288 + MIR SINE MIR 23 226 -36 186 277 229 0 chr4 8488059 8488142 -193840205 + MIR SINE MIR 82 183 -79 252 184 0 0 chr4 8488607 8488656 -193839691 + (TCCA)n Simple_repeat Simple_repeat 4 52 0 305 313 80 28 chr4 8488723 8488899 -193839448 + MIR SINE MIR 69 253 -9 2136 107 3 7 chr4 8489315 8489624 -193838723 - AluSc SINE Alu -1 308 1 305 195 0 12 chr4 8490335 8490417 -193837930 + GA-rich Low_complexity Low_complexity 4 84 0 307 297 23 62 chr4 8490465 8490501 -193837846 + L1ME4a LINE L1 5998 6034 -87 1990 99 60 0 chr4 8490501 8490785 -193837562 - AluSx SINE Alu -9 303 3 307 297 23 62 chr4 8490785 8490876 -193837471 + L1ME4a LINE L1 6034 6120 -1 254 283 114 18 chr4 8491268 8491434 -193836913 - LTR33A LTR ERVL -73 450 269 204 297 193 36 chr4 8492870 8493062 -193835285 + L2 LINE L2 2926 3147 -166 249 83 0 0 chr4 8493485 8493521 -193834826 + (GA)n Simple_repeat Simple_repeat 2 37 0 243 61 0 0 chr4 8493552 8493591 -193834756 + (CA)n Simple_repeat Simple_repeat 1 72 0 243 61 0 0 chr4 8493591 8493624 -193834723 + (CA)n Simple_repeat Simple_repeat 2 34 0 219 36 0 107 chr4 8493643 8493699 -193834648 + (CAGAGA)n Simple_repeat Simple_repeat 3 52 0 498 122 31 0 chr4 8494498 8494596 -193833751 + GA-rich Low_complexity Low_complexity 2 102 0 416 236 49 24 chr4 8495214 8495337 -193833010 + MIR SINE MIR 20 145 -63 238 318 55 36 chr4 8496553 8496663 -193831684 - L2 LINE L2 -96 3217 3106 1286 223 72 19 chr4 8496825 8497202 -193831145 - MER77 LTR ERV1 -208 397 1 278 302 21 9 chr4 8497292 8497403 -193830944 - MIR SINE MIR -59 149 75 370 272 54 60 chr4 8497963 8498147 -193830200 + MIR3 SINE MIR 7 189 -19 183 100 0 0 chr4 8498222 8498252 -193830095 + (TTCA)n Simple_repeat Simple_repeat 2 31 0 234 324 100 62 chr4 8498258 8498468 -193829879 - L2 LINE L2 -18 3254 3037 191 304 18 0 chr4 8501583 8501639 -193826708 + MIR SINE MIR 82 138 -70 297 263 102 34 chr4 8503132 8503250 -193825097 + MIR SINE MIR 21 146 -116 307 278 56 49 chr4 8503879 8504023 -193824324 + MIR SINE MIR 89 233 -29 280 267 73 63 chr4 8504159 8504350 -193823997 - MIR SINE MIR -43 219 27 385 220 41 23 chr4 8504748 8505046 -193823301 + CT-rich Low_complexity Low_complexity 1 303 0 228 280 0 0 chr4 8505048 8505098 -193823249 + C-rich Low_complexity Low_complexity 1 50 0 301 201 35 41 chr4 8505100 8505269 -193823078 + CT-rich Low_complexity Low_complexity 1 168 0 266 269 74 37 chr4 8505394 8505502 -193822845 - MIR3 SINE MIR -16 192 81 241 175 0 0 chr4 8505536 8505576 -193822771 - L2 LINE L2 -8 3264 3225 472 214 172 38 chr4 8506228 8506572 -193821775 + MLT1C LTR MaLR 7 488 -17 221 257 16 49 chr4 8508004 8508187 -193820160 + CT-rich Low_complexity Low_complexity 4 180 0 327 217 24 0 chr4 8508426 8508509 -193819838 - MER33 DNA MER1_type -6 357 273 1303 269 62 13 chr4 8508510 8508978 -193819369 + L1MC1 LINE L1 5836 6326 -7 762 169 35 20 chr4 8508986 8509187 -193819160 - MER33 DNA MER1_type -76 248 45 1921 197 91 25 chr4 8509365 8509837 -193818510 + MLT1D LTR MaLR 1 503 -2 252 77 0 0 chr4 8510168 8510207 -193818140 + (TC)n Simple_repeat Simple_repeat 1 39 0 193 309 73 73 chr4 8510207 8510343 -193818004 + L2 LINE L2 3137 3272 0 1982 100 38 10 chr4 8510550 8510863 -193817484 - AluSx SINE Alu 0 312 1 1034 233 177 3 chr4 8510924 8511302 -193817045 - MLT1C LTR MaLR -17 450 7 315 278 48 88 chr4 8511308 8511581 -193816766 + L2 LINE L2 2963 3224 -89 286 369 39 27 chr4 8513219 8513401 -193814946 + MIR SINE MIR 7 191 -49 192 242 0 91 chr4 8513408 8513474 -193814873 + MIR SINE MIR 30 89 -119 196 342 133 0 chr4 8514482 8514602 -193813745 + MIR SINE MIR 108 243 -19 195 42 0 0 chr4 8514957 8514981 -193813366 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 357 293 83 11 chr4 8515153 8515334 -193813013 - MIR SINE MIR -21 241 48 195 291 42 28 chr4 8515866 8515989 -193812358 + MIR3 SINE MIR 25 154 -54 201 74 0 0 chr4 8516313 8516340 -193812007 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 1235 214 82 34 chr4 8516604 8517047 -193811300 + MLT1D LTR MaLR 22 467 0 552 330 47 0 chr4 8517561 8517773 -193810574 + MIR SINE MIR 28 249 -13 390 265 104 90 chr4 8518264 8518475 -193809872 + MIR SINE MIR 21 234 -28 193 331 70 14 chr4 8518584 8518726 -193809621 + L3 LINE CR1 1169 1318 -259 229 279 48 57 chr4 8518994 8519099 -193809248 - MIR SINE MIR -29 179 75 462 292 8 0 chr4 8519323 8519443 -193808904 + MIR3 SINE MIR 81 201 -7 200 338 0 14 chr4 8519600 8519674 -193808673 - L2 LINE L2 0 3313 3241 281 356 35 26 chr4 8519703 8519818 -193808529 - L2 LINE L2 -12 3301 3186 1425 158 81 0 chr4 8519873 8520146 -193808201 + AluJo SINE Alu 1 295 -17 216 0 0 0 chr4 8520735 8520759 -193807588 + (CA)n Simple_repeat Simple_repeat 1 24 0 440 280 45 26 chr4 8521085 8521298 -193807049 - MIR SINE MIR -44 218 7 198 280 17 68 chr4 8521403 8521521 -193806826 + MIR3 SINE MIR 81 192 -16 296 295 0 0 chr4 8521700 8521778 -193806569 + CT-rich Low_complexity Low_complexity 2 79 0 233 306 0 24 chr4 8523002 8523087 -193805260 + GA-rich Low_complexity Low_complexity 1 83 0 330 321 116 50 chr4 8523087 8523299 -193805048 + L1M4 LINE L1 3074 3293 -2853 194 61 0 30 chr4 8523299 8523332 -193805015 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 330 321 116 50 chr4 8523332 8523506 -193804841 + L1M4 LINE L1 3293 3454 -2692 385 338 79 46 chr4 8525327 8525721 -193802626 - L1M4 LINE L1 -2771 3375 2972 503 251 133 15 chr4 8525867 8526070 -193802277 + MIR SINE MIR 14 240 -22 203 257 27 81 chr4 8526495 8526569 -193801778 + MIR3 SINE MIR 88 157 -51 210 270 0 0 chr4 8527252 8527326 -193801021 + (CA)n Simple_repeat Simple_repeat 1 74 0 518 360 76 73 chr4 8527600 8528191 -193800156 - L1MC4a LINE L1 -1611 6197 5605 744 195 37 60 chr4 8528813 8528991 -193799356 + L1ME1 LINE L1 5952 6126 -40 2297 95 0 3 chr4 8528991 8529296 -193799051 + AluSq SINE Alu 1 304 -9 744 195 37 60 chr4 8529296 8529332 -193799015 + L1ME1 LINE L1 6126 6161 -5 491 261 15 15 chr4 8530575 8530705 -193797642 + L2 LINE L2 3142 3271 -1 529 279 8 0 chr4 8531246 8531375 -193796972 + MIR SINE MIR 94 223 -39 188 268 36 0 chr4 8533128 8533184 -193795163 - L2 LINE L2 -8 3264 3207 391 296 254 0 chr4 8533197 8533477 -193794870 - L2 LINE L2 -10 3262 2912 483 226 82 7 chr4 8533902 8534048 -193794299 + MLT1B LTR MaLR 29 185 -205 206 23 93 0 chr4 8534049 8534092 -193794255 + CT-rich Low_complexity Low_complexity 2 48 0 575 232 53 0 chr4 8534158 8534309 -193794038 + MLT1B LTR MaLR 232 390 0 330 263 105 15 chr4 8536060 8536193 -193792154 + MIR3 SINE MIR 14 158 -50 234 188 21 0 chr4 8536664 8536712 -193791635 - MIR3 SINE MIR -48 160 112 617 202 0 0 chr4 8537201 8537300 -193791047 + FLAM_C SINE Alu 12 110 -33 377 387 28 5 chr4 8537358 8537570 -193790777 - MIR SINE MIR -3 259 43 1172 192 174 53 chr4 8538301 8538681 -193789666 - MSTB LTR MaLR 0 426 1 267 375 49 34 chr4 8539088 8539355 -193788992 - L2 LINE L2 -1 3312 3042 187 270 209 39 chr4 8539395 8539706 -193788641 - L2 LINE L2 -374 2940 2577 194 333 0 13 chr4 8539773 8539848 -193788499 - MIR SINE MIR -111 151 78 26 0 0 0 chr4 8540088 8540114 -193788233 + GC_rich Low_complexity Low_complexity 1 26 0 624 282 58 25 chr4 8541279 8541644 -193786703 - MER115 DNA AcHobo -259 434 58 205 313 47 0 chr4 8541749 8541813 -193786534 - L3 LINE CR1 -248 1329 1263 294 377 16 0 chr4 8542784 8542906 -193785441 - MIR SINE MIR -64 198 75 2149 138 67 3 chr4 8543374 8543750 -193784597 - MSTA LTR MaLR -27 401 2 180 336 96 0 chr4 8546045 8546149 -193782198 + L2 LINE L2 2982 3095 -177 364 273 64 9 chr4 8547030 8547140 -193781207 - MIR SINE MIR -100 162 47 405 164 10 19 chr4 8547594 8547698 -193780649 + (TGGA)n Simple_repeat Simple_repeat 1 103 0 205 303 130 34 chr4 8547802 8548040 -193780307 - L2 LINE L2 -104 3168 2908 195 304 0 0 chr4 8548248 8548294 -193780053 - MIR SINE MIR 0 262 217 2042 90 34 65 chr4 8548485 8548808 -193779539 + AluSq SINE Alu 1 313 0 2342 87 0 0 chr4 8548979 8549290 -193779057 + AluY SINE Alu 1 311 0 185 313 8 62 chr4 8549638 8549766 -193778581 - L2 LINE L2 -272 3041 2921 255 360 72 0 chr4 8549807 8549946 -193778401 - L2 LINE L2 -558 2756 2608 331 281 99 52 chr4 8550393 8550655 -193777692 - L1M2 LINE L1 -4791 2058 1761 323 350 50 7 chr4 8551643 8551790 -193776557 - MIR SINE MIR -61 147 14 586 223 0 0 chr4 8552677 8552798 -193775549 - MIR SINE MIR -62 200 80 551 312 47 31 chr4 8553388 8553705 -193774642 - L1ME1 LINE L1 -4 6162 5841 2390 66 3 0 chr4 8554850 8555152 -193773195 + AluY SINE Alu 1 303 -8 220 263 18 0 chr4 8555791 8555848 -193772499 + GA-rich Low_complexity Low_complexity 4 61 0 380 198 25 136 chr4 8555947 8556109 -193772238 + L2 LINE L2 3170 3313 0 314 286 76 19 chr4 8556143 8556248 -193772099 + MIR SINE MIR 123 233 -29 270 116 0 0 chr4 8557360 8557403 -193770944 + (CA)n Simple_repeat Simple_repeat 2 44 0 312 256 132 31 chr4 8557405 8557534 -193770813 - L2 LINE L2 -22 3291 3150 233 299 188 17 chr4 8557692 8557809 -193770538 + L2 LINE L2 3136 3272 0 1693 247 46 40 chr4 8558790 8558910 -193769437 + L1ME1 LINE L1 5084 5202 -964 2161 123 0 3 chr4 8558910 8559219 -193769128 + AluSc SINE Alu 1 308 -1 1693 247 46 40 chr4 8559219 8559834 -193768513 + L1ME1 LINE L1 5202 5831 -335 2418 66 0 3 chr4 8560468 8560769 -193767578 - AluY SINE Alu -11 300 1 183 325 12 62 chr4 8561849 8561929 -193766418 + MIR SINE MIR 64 139 -123 323 328 156 25 chr4 8562393 8562885 -193765462 + L2 LINE L2 2682 3247 -25 237 33 0 0 chr4 8562897 8562927 -193765420 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 208 231 0 0 chr4 8562992 8563031 -193765316 + (CA)n Simple_repeat Simple_repeat 2 40 0 289 357 56 16 chr4 8563059 8563185 -193765162 + MIR3 SINE MIR 15 145 -63 266 133 85 55 chr4 8563549 8563714 -193764633 + (CACAA)n Simple_repeat Simple_repeat 4 173 0 * 277 189 16 33 chr4 8563598 8563720 -193764627 + (CAA)n Simple_repeat Simple_repeat 1 120 0 803 244 24 8 chr4 8563924 8564170 -193764177 + MSTA LTR MaLR 179 428 0 308 250 0 33 chr4 8566040 8566132 -193762215 + HsTC2 DNA Tc2 1 89 -1809 853 316 110 24 chr4 8566750 8567382 -193760965 - L2 LINE L2 -3 3310 2613 2050 126 0 3 chr4 8568316 8568610 -193759737 + AluSx SINE Alu 5 297 -15 1328 196 40 108 chr4 8568628 8569127 -193759220 - MLT1C LTR MaLR -2 465 1 789 177 0 0 chr4 8571133 8571280 -193757067 - L1MC/D LINE L1 -710 5634 5488 336 315 20 41 chr4 8571288 8571368 -193756979 + MIR SINE MIR 116 193 -69 192 40 0 0 chr4 8571368 8571393 -193756954 + (TGAA)n Simple_repeat Simple_repeat 3 27 0 336 315 20 41 chr4 8571393 8571458 -193756889 + MIR SINE MIR 193 258 -4 234 275 36 58 chr4 8573234 8573372 -193754975 - MIR SINE MIR -90 172 38 944 135 12 0 chr4 8573484 8573654 -193754693 + (TTCA)n Simple_repeat Simple_repeat 2 173 0 321 274 186 0 chr4 8573665 8573767 -193754580 - L2 LINE L2 -15 3257 3137 220 271 82 16 chr4 8573840 8573962 -193754385 - L2 LINE L2 -1469 1845 1716 * 233 241 0 0 chr4 8573956 8574010 -193754337 + L2 LINE L2 3218 3271 -1 201 262 153 38 chr4 8574304 8574487 -193753860 - L2 LINE L2 -411 2903 2700 350 321 38 2 chr4 8574821 8575025 -193753322 + MIR3 SINE MIR 1 259 -3 308 280 136 8 chr4 8575154 8575279 -193753068 - MIR3 SINE MIR -32 176 36 763 246 158 7 chr4 8575285 8575557 -193752790 - MLT1C LTR MaLR -21 446 134 2289 95 0 0 chr4 8575591 8575887 -193752460 - AluSq SINE Alu -17 296 1 680 133 9 0 chr4 8777052 8777157 -193551190 + AluJo/FRAM SINE Alu 187 292 -20 365 206 10 20 chr4 8777168 8777270 -193551077 + L1MC/D LINE L1 4926 5026 -1120 2589 185 61 3 chr4 8777272 8777868 -193550479 + L1MC/D LINE L1 5191 5814 -428 873 259 119 55 chr4 8778282 8778473 -193549874 - MLT1F1 LTR MaLR -74 519 342 1887 194 36 12 chr4 8778473 8778891 -193549456 - MSTA LTR MaLR 0 428 1 873 259 119 55 chr4 8778891 8779160 -193549187 - MLT1F1 LTR MaLR -251 342 1 1839 171 0 13 chr4 8779194 8779510 -193548837 + AluJb SINE Alu 1 312 0 1286 133 0 0 chr4 8779521 8779694 -193548653 + AluSg SINE Alu 1 173 -137 230 348 35 7 chr4 8780164 8780305 -193548042 + L3 LINE CR1 1229 1373 -204 2122 138 3 0 chr4 8780365 8780655 -193547692 - AluJb SINE Alu -21 291 1 269 123 5 0 chr4 8780736 8780785 -193547562 - MLT2C1 LTR ERVL -2 395 358 1005 145 0 0 chr4 8780801 8780980 -193547367 + (TGGA)n Simple_repeat Simple_repeat 2 180 0 531 253 188 5 chr4 8781123 8781325 -193547022 - MIR SINE MIR -1 261 23 507 281 98 12 chr4 8781689 8781853 -193546494 - MER5B DNA MER1_type 0 178 1 240 239 30 30 chr4 8782234 8782301 -193546046 + MIR SINE MIR 16 82 -126 1673 167 7 4 chr4 8783687 8783957 -193544390 + AluJo SINE Alu 33 303 -9 232 254 0 28 chr4 8783961 8784032 -193544315 - MER112 DNA MER1_type -121 139 71 887 89 35 84 chr4 8784426 8784604 -193543743 - L1MA5A LINE L1 -3 6294 6126 2413 90 0 0 chr4 8784604 8784903 -193543444 - AluSx SINE Alu -13 299 1 887 89 35 84 chr4 8784903 8784926 -193543421 - L1MA5A LINE L1 -171 6126 6103 2162 156 32 0 chr4 8784926 8785297 -193543050 - L1MA5A LINE L1 -363 5934 5549 1926 124 20 20 chr4 8785299 8785597 -193542750 - AluSq SINE Alu -15 298 1 994 104 8 0 chr4 8785597 8785731 -193542616 - AluSq/x SINE Alu -178 135 1 458 139 0 12 chr4 8785732 8785818 -193542529 - L1MA5A LINE L1 -737 5563 5479 360 315 145 13 chr4 8786121 8786218 -193542129 + L3 LINE CR1 1234 1317 -260 2005 157 0 28 chr4 8786218 8786537 -193541810 + AluJo SINE Alu 1 310 -2 360 315 145 13 chr4 8786537 8786674 -193541673 + L3 LINE CR1 1317 1499 -78 943 226 62 28 chr4 8787080 8787368 -193540979 + MER63B DNA MER1_type 39 336 -100 29 0 0 0 chr4 8787368 8787397 -193540950 + AT_rich Low_complexity Low_complexity 1 29 0 2204 110 4 0 chr4 8787405 8787719 -193540628 + AluSp SINE Alu 1 315 0 251 183 12 0 chr4 8787720 8787802 -193540545 + (TA)n Simple_repeat Simple_repeat 1 83 0 1832 174 3 0 chr4 8787809 8788103 -193540244 - AluJo SINE Alu -17 295 1 454 206 23 30 chr4 8788109 8788240 -193540107 + MER63B DNA MER1_type 304 433 -2 1462 140 34 45 chr4 8788480 8788772 -193539575 + THE1C LTR MaLR 87 375 0 218 259 0 12 chr4 8788772 8788857 -193539490 + (CA)n Simple_repeat Simple_repeat 1 84 0 2052 113 3 3 chr4 8788920 8789240 -193539107 + AluSx SINE Alu 1 320 0 307 307 106 30 chr4 8789257 8789521 -193538826 + L1ME4a LINE L1 5837 6120 -1 1759 120 76 10 chr4 8790847 8791148 -193537199 + LTR24C LTR ERV1 1 321 -314 430 317 158 19 chr4 8791154 8791476 -193536871 + MLT1K LTR MaLR 110 476 -112 437 146 10 87 chr4 8791501 8791604 -193536743 + MER4D LTR ERV1 1 95 -808 207 0 0 0 chr4 8791704 8791727 -193536620 + (A)n Simple_repeat Simple_repeat 1 23 0 1860 154 13 35 chr4 8791805 8792117 -193536230 + AluSx SINE Alu 5 309 -3 1019 175 82 39 chr4 8792290 8792422 -193535925 + AluJo SINE Alu 1 147 -165 2369 113 0 0 chr4 8792422 8792733 -193535614 + AluSx SINE Alu 1 311 -1 1019 175 82 39 chr4 8792733 8792806 -193535541 + AluJo SINE Alu 147 215 -97 284 367 11 0 chr4 8792806 8792896 -193535451 - LTR16C LTR ERVL -287 204 114 224 285 86 99 chr4 8793048 8793420 -193534927 + L2 LINE L2 2858 3224 -48 2494 137 23 44 chr4 8793440 8793913 -193534434 - LTR24 LTR ERV1 0 467 5 266 247 206 16 chr4 8793962 8794156 -193534191 - L2 LINE L2 -235 3037 2807 2436 94 3 0 chr4 8795208 8795516 -193532831 + AluSx SINE Alu 1 309 -3 1326 209 38 59 chr4 8795574 8795947 -193532400 + MER47A DNA MER2_type 1 365 -1 441 230 27 61 chr4 8795952 8796100 -193532247 - L2 LINE L2 -18 3295 3153 2287 77 38 0 chr4 8797736 8798023 -193530324 + AluSc SINE Alu 1 298 -11 1775 176 6 38 chr4 8798594 8798912 -193529435 + AluJo SINE Alu 1 308 -4 1404 208 32 45 chr4 8799159 8799368 -193528979 - MLT1A2 LTR MaLR 0 374 171 2190 111 42 0 chr4 8799368 8799657 -193528690 - AluSc SINE Alu -8 301 1 1404 208 32 45 chr4 8799657 8799826 -193528521 - MLT1A2 LTR MaLR -203 171 1 210 254 0 17 chr4 8800096 8800155 -193528192 + MIR3 SINE MIR 123 180 -28 1575 199 95 34 chr4 8800533 8801057 -193527290 + MER89 LTR ERV1 1 556 -3 1023 121 0 0 chr4 8801323 8801455 -193526892 + AluSp SINE Alu 1 132 -181 2033 111 7 0 chr4 8801457 8801728 -193526619 + AluSp SINE Alu 1 273 -40 2002 95 0 0 chr4 8801828 8802071 -193526276 - AluSq SINE Alu -70 243 1 189 107 0 0 chr4 8802126 8802154 -193526193 + (TCC)n Simple_repeat Simple_repeat 2 29 0 854 296 21 8 chr4 8802170 8802413 -193525934 - MIR SINE MIR -6 256 11 275 337 32 4 chr4 8802501 8802624 -193525723 - MIR SINE MIR -65 143 20 1886 117 29 42 chr4 8802768 8803077 -193525270 - AluSx SINE Alu -7 305 1 531 69 0 0 chr4 8803132 8803204 -193525143 + (TGGA)n Simple_repeat Simple_repeat 1 72 0 217 299 26 26 chr4 8803264 8803341 -193525006 - MIR3 SINE MIR -31 177 101 2108 128 42 31 chr4 8803779 8804139 -193524208 - THE1B LTR MaLR 0 364 1 192 294 86 64 chr4 8805353 8805540 -193522807 - L2 LINE L2 -1262 2052 1862 225 263 0 18 chr4 8805735 8805792 -193522555 + GA-rich Low_complexity Low_complexity 1 56 0 365 314 190 0 chr4 8805878 8806104 -193522243 - L2 LINE L2 0 3313 3045 342 323 56 45 chr4 8806258 8806524 -193521823 - L2 LINE L2 -15 3257 2989 1973 128 6 38 chr4 8806547 8806866 -193521481 + AluSx SINE Alu 1 309 -3 324 308 121 5 chr4 8806869 8807062 -193521285 - MIR SINE MIR -11 251 34 687 177 18 0 chr4 8807238 8807402 -193520945 + (TCCA)n Simple_repeat Simple_repeat 1 167 0 383 176 24 0 chr4 8807467 8807552 -193520795 + (TCCA)n Simple_repeat Simple_repeat 4 90 0 209 270 16 0 chr4 8807587 8807650 -193520697 + (TCCA)n Simple_repeat Simple_repeat 2 65 0 318 325 53 18 chr4 8807682 8807796 -193520551 - L2 LINE L2 -22 3250 3133 180 343 0 14 chr4 8807871 8807941 -193520406 - L2 LINE L2 -3 3269 3201 2392 106 0 3 chr4 8807941 8808252 -193520095 - AluSx SINE Alu -2 310 1 231 183 267 0 chr4 8808304 8808364 -193519983 - MIR SINE MIR -62 146 71 189 147 0 0 chr4 8809178 8809212 -193519135 + (GGGAGA)n Simple_repeat Simple_repeat 3 36 0 180 125 0 0 chr4 8809213 8809245 -193519102 + (TG)n Simple_repeat Simple_repeat 1 32 0 266 274 65 40 chr4 8809318 8809442 -193518905 + L2 LINE L2 3187 3313 0 257 196 0 54 chr4 8809584 8809645 -193518702 + polypyrimidine Low_complexity Low_complexity 1 57 0 2326 109 7 0 chr4 8809645 8809949 -193518398 - AluSx SINE Alu -6 306 1 24 0 0 0 chr4 8810588 8810612 -193517735 + AT_rich Low_complexity Low_complexity 1 24 0 2484 83 3 10 chr4 8810758 8811072 -193517275 - AluSx SINE Alu 0 312 1 1912 134 28 3 chr4 8812009 8812316 -193516031 - AluSx SINE Alu 0 314 1 995 74 0 0 chr4 8812502 8812623 -193515724 + AluSc SINE Alu 175 295 -14 274 315 0 0 chr4 8812975 8813048 -193515299 + MIR3 SINE MIR 104 176 -32 253 200 33 33 chr4 8813536 8813596 -193514751 - MIR SINE MIR -67 141 82 1985 144 3 19 chr4 8815459 8815772 -193512575 - AluJb SINE Alu -4 308 1 368 274 96 7 chr4 8817300 8817435 -193510912 - L1MC/D LINE L1 -2211 5597 5451 2348 99 0 3 chr4 8817451 8817754 -193510593 + AluSx SINE Alu 1 302 -10 216 373 27 18 chr4 8817757 8817886 -193510461 - MIR SINE MIR -61 147 20 239 206 14 14 chr4 8817914 8817987 -193510360 + (TA)n Simple_repeat Simple_repeat 1 73 0 4638 67 18 6 chr4 8818671 8819301 -193509046 + L1PA10 LINE L1 5532 6168 0 286 262 49 31 chr4 8819326 8819528 -193508819 - ALR/Alpha Satellite centromeric 0 205 1 208 340 57 0 chr4 8820895 8821001 -193507346 + MIR SINE MIR 33 144 -64 279 310 90 7 chr4 8821511 8821666 -193506681 - L1ME4a LINE L1 -108 6013 5846 405 331 17 29 chr4 8821730 8821905 -193506442 - MIR SINE MIR -4 258 86 25 51 0 0 chr4 8823009 8823048 -193505299 + AT_rich Low_complexity Low_complexity 1 39 0 319 253 50 104 chr4 8823208 8823390 -193504957 - MIR SINE MIR -74 188 17 436 246 90 0 chr4 8823441 8823563 -193504784 - FLAM_A SINE Alu 0 133 1 544 126 39 19 chr4 8823564 8823667 -193504680 + L1M2 LINE L1 5337 5441 -856 2235 89 0 0 chr4 8823780 8824050 -193504297 - AluY SINE Alu -39 272 3 1737 155 73 9 chr4 8824055 8824396 -193503951 + MER4D LTR ERV1 541 903 0 266 224 92 13 chr4 8824396 8824458 -193503889 + MLT1K LTR MaLR 505 572 -16 190 0 0 0 chr4 8825511 8825532 -193502815 + (TTA)n Simple_repeat Simple_repeat 2 180 0 2164 96 11 0 chr4 8825532 8825812 -193502535 - AluSx SINE Alu -29 283 1 197 260 55 14 chr4 8829104 8829177 -193499170 - MIR3 SINE MIR -23 185 110 422 209 228 0 chr4 8829252 8829410 -193498937 + MER96B DNA MER1_type? 224 417 0 2099 112 7 0 chr4 8829484 8829780 -193498567 - AluSx SINE Alu -14 298 1 1656 175 20 3 chr4 8829790 8830087 -193498260 - AluJo SINE Alu -10 302 1 456 153 0 14 chr4 8830114 8830186 -193498161 - FLAM_A SINE Alu -25 117 47 776 199 0 6 chr4 8830625 8830806 -193497541 + CT-rich Low_complexity Low_complexity 1 180 0 1885 251 82 28 chr4 8830963 8831631 -193496716 - L1MC3 LINE L1 -190 7595 6892 210 219 62 0 chr4 8832451 8832515 -193495832 + MIR SINE MIR 65 132 -76 2194 96 6 13 chr4 8832638 8832951 -193495396 - AluSx SINE Alu -1 311 1 1576 194 20 0 chr4 8833724 8834023 -193494324 - AluJo SINE Alu -5 307 3 655 250 66 5 chr4 8834391 8834587 -193493760 - MLT1B LTR MaLR 0 390 183 517 219 52 24 chr4 8834742 8834920 -193493427 - MLT1B LTR MaLR -196 178 1 843 183 0 0 chr4 8836105 8836473 -193491874 + (CTCA)n Simple_repeat Simple_repeat 1 368 0 234 105 0 0 chr4 8837324 8837362 -193490985 + (A)n Simple_repeat Simple_repeat 1 38 0 604 288 59 5 chr4 8839301 8839476 -193488871 + MIR SINE MIR 13 204 -58 2211 80 3 10 chr4 8839476 8839776 -193488571 - AluSx SINE Alu -14 298 1 604 288 59 5 chr4 8839776 8839819 -193488528 + MIR SINE MIR 204 243 -19 256 111 37 74 chr4 8841988 8842096 -193486251 + (TGGG)n Simple_repeat Simple_repeat 3 106 0 338 350 97 14 chr4 8843551 8843768 -193484579 + MIR SINE MIR 16 250 -12 284 207 0 11 chr4 8843782 8843869 -193484478 + (CA)n Simple_repeat Simple_repeat 2 87 0 892 257 20 76 chr4 8843870 8844224 -193484123 + MER2 DNA MER2_type 5 338 -7 394 222 8 8 chr4 8844239 8844356 -193483991 + (CA)n Simple_repeat Simple_repeat 2 118 0 335 309 11 17 chr4 8844438 8844619 -193483728 + (CA)n Simple_repeat Simple_repeat 1 180 0 214 292 115 15 chr4 8845509 8845639 -193482708 + L2 LINE L2 3169 3311 -2 1939 122 0 0 chr4 8846000 8846278 -193482069 - AluSx SINE Alu -17 295 18 987 189 25 5 chr4 8846423 8846624 -193481723 - MER46A DNA MER2_type 0 236 32 284 356 110 0 chr4 8846669 8846815 -193481532 + MIR3 SINE MIR 30 191 -17 1981 99 67 0 chr4 8847204 8847486 -193480861 - AluSq SINE Alu -12 301 1 253 348 22 23 chr4 8847872 8848076 -193480271 - MIR3 SINE MIR -56 206 6 1642 148 25 18 chr4 8849217 8849531 -193478816 + AluJo SINE Alu 1 316 0 521 227 111 29 chr4 8849578 8849750 -193478597 + MIR SINE MIR 74 259 -3 2094 124 3 0 chr4 8850521 8850827 -193477520 - AluSx SINE Alu -5 307 1 262 134 239 15 chr4 8850975 8851042 -193477305 + L2 LINE L2 3232 3313 0 206 351 99 13 chr4 8853203 8853354 -193474993 - MIR3 SINE MIR -6 202 39 1847 145 41 0 chr4 8854220 8854510 -193473837 - AluSx SINE Alu -9 303 2 366 291 114 50 chr4 8854607 8855088 -193473259 - L2 LINE L2 -813 2501 1990 807 185 0 0 chr4 8855092 8855222 -193473125 + FLAM_C SINE Alu 1 130 -3 180 213 43 43 chr4 8855236 8855283 -193473064 - L2 LINE L2 -346 2967 2921 2239 74 0 17 chr4 8855423 8855721 -193472626 - AluSx SINE Alu -19 293 1 39 60 0 0 chr4 8856097 8856164 -193472183 + GC_rich Low_complexity Low_complexity 1 67 0 28 0 0 0 chr4 8856257 8856285 -193472062 + GC_rich Low_complexity Low_complexity 1 28 0 28 0 0 0 chr4 8857152 8857180 -193471167 + GC_rich Low_complexity Low_complexity 1 28 0 2262 93 0 0 chr4 8858255 8858556 -193469791 + AluSx SINE Alu 1 301 -11 211 281 85 0 chr4 8858605 8858687 -193469660 + MIR3 SINE MIR 113 201 -7 2184 111 0 0 chr4 8859161 8859459 -193468888 + AluY SINE Alu 1 298 -13 860 195 5 56 chr4 8859542 8859737 -193468610 + FRAM SINE Alu 1 176 0 332 231 0 100 chr4 8860710 8860840 -193467507 + MIR SINE MIR 90 205 -57 189 341 121 0 chr4 8861451 8861542 -193466805 - L2 LINE L2 -13 3259 3158 758 232 211 10 chr4 8862066 8862355 -193465992 - MLT1E LTR MaLR 0 593 247 583 118 0 32 chr4 8862449 8862542 -193465805 - AluSg/x SINE Alu -13 297 208 2142 109 0 0 chr4 8862699 8862992 -193465355 - AluSg SINE Alu -9 301 9 2240 71 14 3 chr4 8863583 8863879 -193464468 + AluY SINE Alu 1 299 -12 1449 182 41 10 chr4 8864059 8864350 -193463997 + AluJo SINE Alu 3 302 -10 438 286 26 32 chr4 8864413 8864567 -193463780 - HAL1 LINE L1 -2 2505 2353 1841 145 7 3 chr4 8864690 8864979 -193463368 + AluSx SINE Alu 1 290 -22 334 208 65 0 chr4 8865013 8865090 -193463257 + MER21B LTR ERV1 16 97 -766 1740 233 32 68 chr4 8865096 8865594 -193462753 + MER21B LTR ERV1 19 498 -365 445 261 200 11 chr4 8865594 8865774 -193462573 - MIR SINE MIR -45 217 4 309 248 132 33 chr4 8866788 8866909 -193461438 + MIR SINE MIR 14 146 -116 2305 89 0 0 chr4 8867054 8867356 -193460991 + AluSg SINE Alu 1 302 -8 886 131 0 0 chr4 8868075 8868197 -193460150 - FLAM_C SINE Alu -11 122 1 745 271 114 0 chr4 8868248 8868458 -193459889 - MIR SINE MIR -18 244 11 1851 114 4 0 chr4 8868733 8869004 -193459343 + AluSx SINE Alu 30 301 -11 330 244 167 0 chr4 8869994 8870084 -193458263 + L2 LINE L2 3168 3272 0 358 313 42 14 chr4 8870221 8870365 -193457982 + L2 LINE L2 3125 3272 0 213 152 0 0 chr4 8870369 8870402 -193457945 - L2 LINE L2 -8 3305 3273 196 268 49 37 chr4 8872278 8872360 -193455987 - MIR3 SINE MIR -111 97 15 532 315 82 0 chr4 8873582 8873766 -193454581 + MER58A DNA MER1_type 23 221 -3 2221 132 3 0 chr4 8874406 8874717 -193453630 - AluSx SINE Alu 0 312 1 362 272 26 9 chr4 8874863 8874977 -193453370 - MIR SINE MIR -119 143 28 347 214 71 20 chr4 8876481 8876579 -193451768 + MIR SINE MIR 100 202 -60 630 157 21 0 chr4 8877055 8877195 -193451152 + (TCCA)n Simple_repeat Simple_repeat 3 145 0 2457 81 3 0 chr4 8877724 8878021 -193450326 - AluSx SINE Alu -14 298 1 372 333 154 5 chr4 8878021 8878216 -193450131 - MIR SINE MIR -16 246 23 336 271 201 7 chr4 8878415 8878559 -193449788 - MIR SINE MIR -71 191 20 562 333 131 47 chr4 8878578 8878771 -193449576 - L1MDb LINE L1 -3371 3035 2860 1856 144 23 26 chr4 8878771 8879077 -193449270 - AluSx SINE Alu -7 305 1 562 333 131 47 chr4 8879077 8879462 -193448885 - L1MDb LINE L1 -3546 2860 2408 192 237 34 34 chr4 8879615 8879674 -193448673 - L2 LINE L2 -1 3312 3254 1902 122 56 4 chr4 8879910 8880180 -193448167 - AluSx SINE Alu -24 288 5 207 0 0 0 chr4 8880196 8880219 -193448128 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 194 213 64 0 chr4 8882921 8882968 -193445379 - MIR3 SINE MIR -47 161 112 1969 145 24 0 chr4 8883100 8883396 -193444951 + AluJo SINE Alu 1 303 -9 308 272 144 30 chr4 8883411 8883613 -193444734 + MER102a DNA MER1_type 98 322 -8 5945 0 0 0 chr4 8883797 8884474 -193443873 - L1HS LINE L1 0 6155 5479 2481 12 0 0 chr4 8884469 8884873 -193443474 + L1P1 LINE L1 5086 5489 -666 * 334 252 37 30 chr4 8885571 8885706 -193442641 - MIR3 SINE MIR -43 165 30 755 234 12 0 chr4 8885824 8885991 -193442356 + MER5A DNA MER1_type 3 171 -18 2475 212 70 107 chr4 8886124 8886760 -193441587 - L1MDb LINE L1 -4233 2173 1515 2330 107 0 13 chr4 8886760 8887069 -193441278 - AluSc SINE Alu -4 305 1 2475 212 70 107 chr4 8887069 8887571 -193440776 - L1MDb LINE L1 -4891 1515 1030 2330 92 3 16 chr4 8887571 8887885 -193440462 - AluSp SINE Alu -3 310 1 2475 212 70 107 chr4 8887885 8888245 -193440102 - L1MDb LINE L1 -5376 1030 658 213 225 62 25 chr4 8888682 8888762 -193439585 + MER5B DNA MER1_type 96 178 0 2238 99 27 0 chr4 8888763 8889057 -193439290 - AluSp SINE Alu -11 302 1 392 308 20 41 chr4 8889137 8889283 -193439064 - MIR3 SINE MIR -63 145 3 303 214 80 45 chr4 8890081 8890193 -193438154 - MIR SINE MIR -112 150 35 190 83 139 0 chr4 8890202 8890238 -193438109 - MIR SINE MIR -165 97 57 217 196 22 0 chr4 8891677 8891723 -193436624 + (TA)n Simple_repeat Simple_repeat 2 48 0 330 248 0 99 chr4 8891723 8891824 -193436523 - L1MC4 LINE L1 -1339 6703 6613 340 158 12 12 chr4 8891839 8891921 -193436426 + (CA)n Simple_repeat Simple_repeat 2 83 0 684 201 66 1 chr4 8892077 8892248 -193436099 - L1MD2 LINE L1 0 8042 6255 628 268 128 22 chr4 8892262 8892305 -193436042 - L2 LINE L2 -640 2674 2637 2191 112 10 3 chr4 8892305 8892601 -193435746 - AluSq SINE Alu -13 300 3 628 268 128 22 chr4 8892601 8892870 -193435477 - L2 LINE L2 -677 2637 2329 2153 111 3 49 chr4 8892897 8893221 -193435126 + AluSx SINE Alu 3 311 -1 253 253 325 6 chr4 8893581 8893747 -193434600 - L2 LINE L2 -1015 2299 2081 259 245 138 13 chr4 8894139 8894298 -193434049 - L2 LINE L2 -1370 1944 1766 2202 87 37 10 chr4 8894522 8894821 -193433526 + AluSp SINE Alu 1 307 -6 181 270 72 63 chr4 8895149 8895260 -193433087 - MIR SINE MIR -3 259 148 220 306 162 51 chr4 8895307 8895523 -193432824 - MIR SINE MIR -1 261 22 791 234 57 0 chr4 8896312 8896504 -193431843 - MER58A DNA MER1_type 0 224 22 335 216 62 0 chr4 8896859 8896956 -193431391 + MER5A DNA MER1_type 7 109 -80 2618 53 0 3 chr4 8897077 8897379 -193430968 - AluY SINE Alu -10 301 1 2228 114 0 19 chr4 8898596 8898913 -193429434 - AluSq SINE Alu -2 311 1 207 0 0 0 chr4 8898913 8898936 -193429411 + (T)n Simple_repeat Simple_repeat 1 23 0 2018 229 118 53 chr4 8899347 8900972 -193427375 - L1ME1 LINE L1 -108 6058 4345 304 159 43 0 chr4 8900988 8901057 -193427290 - L1MA10 LINE L1 -7 6327 6256 2095 84 32 21 chr4 8901111 8901395 -193426952 - AluSc SINE Alu -2 307 21 1128 238 165 36 chr4 8901452 8901594 -193426753 - L1ME1 LINE L1 -2273 3873 3751 2245 121 0 3 chr4 8901594 8901899 -193426448 + AluSx SINE Alu 4 307 -5 1128 238 165 36 chr4 8901899 8902277 -193426070 - L1ME1 LINE L1 -2395 3751 3286 2231 119 0 0 chr4 8902556 8902851 -193425496 + AluSx SINE Alu 1 295 -17 267 330 0 29 chr4 8904415 8904518 -193423829 - MIR SINE MIR -82 180 81 261 278 93 117 chr4 8905032 8905475 -193422872 - L2 LINE L2 -4 3268 2837 198 0 0 0 chr4 8906512 8906534 -193421813 + (T)n Simple_repeat Simple_repeat 1 22 0 183 247 186 31 chr4 8906603 8906700 -193421647 - L2 LINE L2 -20 3252 3141 2387 113 0 0 chr4 8906966 8907277 -193421070 + AluSx SINE Alu 1 311 -1 220 229 29 43 chr4 8908078 8908148 -193420199 + MIR SINE MIR 33 101 -107 2415 86 0 7 chr4 8908258 8908559 -193419788 + AluY SINE Alu 1 299 -12 231 114 0 0 chr4 8908602 8908637 -193419710 + (CAA)n Simple_repeat Simple_repeat 1 35 0 3218 166 54 26 chr4 8908693 8909196 -193419151 + MER39 LTR ERV1 1 489 -218 2262 109 7 0 chr4 8909196 8909499 -193418848 + AluSp SINE Alu 1 305 -8 2015 150 0 3 chr4 8909506 8909806 -193418541 + AluJo SINE Alu 1 299 -13 3218 166 54 26 chr4 8909806 8909982 -193418365 + MER39 LTR ERV1 494 707 0 1501 200 67 9 chr4 8910042 8910372 -193417975 + MLT1B LTR MaLR 1 349 -41 207 188 0 0 chr4 8911086 8911134 -193417213 + (TA)n Simple_repeat Simple_repeat 1 48 0 237 33 0 0 chr4 8911275 8911305 -193417042 + (CA)n Simple_repeat Simple_repeat 1 30 0 198 0 0 0 chr4 8911308 8911330 -193417017 + (TC)n Simple_repeat Simple_repeat 1 22 0 2303 75 7 0 chr4 8912007 8912323 -193416024 + AluSg SINE Alu 1 318 0 1370 187 133 3 chr4 8913323 8913655 -193414692 + MLT1B LTR MaLR 5 379 -11 465 66 0 0 chr4 8913992 8914053 -193414294 + (TCC)n Simple_repeat Simple_repeat 2 62 0 359 244 27 54 chr4 8915082 8915233 -193413114 - MIR SINE MIR -44 164 10 345 313 62 35 chr4 8915681 8915908 -193412439 + L2 LINE L2 3034 3266 -6 3033 126 43 32 chr4 8916028 8916367 -193411980 + MER4B LTR ERV1 1 335 -444 2121 134 3 0 chr4 8916367 8916666 -193411681 - AluSx SINE Alu -12 300 1 3033 126 43 32 chr4 8916666 8916925 -193411422 + MER4B LTR ERV1 335 779 0 3452 125 81 23 chr4 8917873 8917905 -193410442 + LTR9B LTR ERV1 1 30 -614 2296 95 0 52 chr4 8917905 8918231 -193410116 + AluSc SINE Alu 1 309 0 3452 125 81 23 chr4 8918231 8918807 -193409540 + LTR9B LTR ERV1 30 644 0 448 113 0 38 chr4 8919709 8919789 -193408558 + MER4A LTR ERV1 22 98 -566 1697 117 3 80 chr4 8919789 8920149 -193408198 + MER4A LTR ERV1 261 664 0 1206 237 118 9 chr4 8920288 8920626 -193407721 + MSTD LTR MaLR 14 388 -8 185 299 115 60 chr4 8921014 8921231 -193407116 - L2 LINE L2 -24 3248 3020 189 253 131 40 chr4 8922186 8922285 -193406062 + L2 LINE L2 3164 3271 -1 23 0 0 0 chr4 8922429 8922452 -193405895 + AT_rich Low_complexity Low_complexity 1 23 0 1118 137 0 0 chr4 8922469 8922622 -193405725 + AluSq SINE Alu 1 153 -160 2088 144 43 0 chr4 8922815 8923114 -193405233 - AluSx SINE Alu 0 312 1 286 281 162 12 chr4 8923193 8923389 -193404958 - L1ME LINE L1 -477 5644 5422 867 212 100 111 chr4 8924391 8924843 -193403504 + MER31B LTR ERV1 20 466 0 1708 218 48 88 chr4 8924935 8925347 -193403000 + MER34C LTR ERV1 1 381 -204 2170 103 0 31 chr4 8925347 8925666 -193402681 + AluSx SINE Alu 1 309 -3 1708 218 48 88 chr4 8925666 8925863 -193402484 + MER34C LTR ERV1 381 585 0 239 193 18 35 chr4 8927116 8927173 -193401174 + G-rich Low_complexity Low_complexity 1 56 0 245 301 155 29 chr4 8927783 8928022 -193400325 + L2 LINE L2 2913 3181 -91 2327 60 3 17 chr4 8928165 8928467 -193399880 - AluY SINE Alu -13 298 1 2265 82 0 7 chr4 8928801 8929093 -193399254 - AluSc SINE Alu -19 290 1 545 270 103 0 chr4 8929171 8929356 -193398991 - MIR SINE MIR -50 212 9 1041 222 31 38 chr4 8929591 8929983 -193398364 + LTR10B LTR ERV1 214 505 0 1285 194 150 19 chr4 8929983 8930344 -193398003 + MSTC LTR MaLR 21 428 0 494 274 203 0 chr4 8930368 8930634 -193397713 + L1ME3A LINE L1 5841 6160 -10 300 167 0 0 chr4 8930638 8930686 -193397661 + L1MB5 LINE L1 5004 5051 -1095 1693 176 0 7 chr4 8930696 8930980 -193397367 + AluJo SINE Alu 1 282 -30 1436 209 20 22 chr4 8930993 8931351 -193396996 + L1MB5 LINE L1 5315 5671 -509 2038 139 17 0 chr4 8931370 8931672 -193396675 + AluSx SINE Alu 1 307 -5 331 208 0 0 chr4 8931678 8931750 -193396597 + G-rich Low_complexity Low_complexity 3 74 0 747 101 0 0 chr4 8931758 8931857 -193396490 + AluY SINE Alu 10 108 -203 926 66 0 0 chr4 8931959 8932081 -193396266 + AluY SINE Alu 173 294 -17 771 112 0 0 chr4 8932081 8932197 -193396150 + (GGAA)n Simple_repeat Simple_repeat 3 118 0 2023 209 48 6 chr4 8932203 8932686 -193395661 + L1MB5 LINE L1 5672 6174 0 569 329 42 19 chr4 8932700 8932916 -193395431 - MIR SINE MIR -3 259 39 180 317 79 10 chr4 8933510 8933611 -193394736 + MIR SINE MIR 42 149 -59 222 205 26 13 chr4 8935313 8935469 -193392878 + (TG)n Simple_repeat Simple_repeat 2 159 0 420 237 28 11 chr4 8935543 8935720 -193392627 + (TG)n Simple_repeat Simple_repeat 1 180 0 406 203 10 29 chr4 8935773 8936090 -193392257 + (TG)n Simple_repeat Simple_repeat 1 311 0 201 348 22 0 chr4 8936502 8936594 -193391753 + GA-rich Low_complexity Low_complexity 2 95 0 328 287 22 52 chr4 8939485 8939568 -193388779 + L1MC/D LINE L1 5303 5382 -2426 2172 135 3 0 chr4 8939568 8939880 -193388467 + AluSq SINE Alu 1 313 0 328 287 22 52 chr4 8939880 8939932 -193388415 + L1MC/D LINE L1 5382 5434 -2374 1201 203 13 4 chr4 8939935 8940167 -193388180 + AluJo SINE Alu 2 235 -77 1401 88 0 0 chr4 8940271 8940452 -193387895 + AluSg/x SINE Alu 130 310 -2 463 222 153 11 chr4 8940455 8940644 -193387703 + LTR48B LTR ERV1 429 644 0 1993 83 0 76 chr4 8941147 8941472 -193386875 + AluSc SINE Alu 1 302 0 187 319 43 29 chr4 8942092 8942161 -193386186 - L3b LINE CR1 -51 1532 1463 454 255 50 37 chr4 8942169 8942330 -193386017 + MIR SINE MIR 21 183 -79 1760 220 69 21 chr4 8942333 8942756 -193385591 + LTR47B LTR ERVL 1 443 0 1876 143 6 13 chr4 8943031 8943345 -193385002 + AluSx SINE Alu 1 312 0 2107 129 0 3 chr4 8943493 8943796 -193384551 + AluSq SINE Alu 1 302 -11 2521 62 0 0 chr4 8943796 8944101 -193384246 + AluY SINE Alu 1 305 -6 191 344 32 0 chr4 8944619 8944712 -193383635 + L3 LINE CR1 1131 1226 -351 354 288 104 8 chr4 8944790 8944915 -193383432 + MLT1I LTR MaLR 68 204 -205 192 253 172 11 chr4 8945184 8945271 -193383076 + L2 LINE L2 3168 3268 -4 634 257 183 0 chr4 8945385 8945560 -193382787 - MER3 DNA MER1_type 0 209 3 2028 110 13 7 chr4 8945749 8946059 -193382288 + AluSx SINE Alu 1 312 0 340 338 32 32 chr4 8946308 8946524 -193381823 + L2 LINE L2 2841 3056 -257 298 286 80 9 chr4 8948791 8948903 -193379444 - MIR SINE MIR -55 153 34 201 325 36 0 chr4 8949295 8949378 -193378969 + MIR SINE MIR 98 183 -79 2053 241 13 53 chr4 8949790 8950396 -193377951 + L1MB5 LINE L1 5557 6138 -36 2098 109 31 0 chr4 8950400 8950694 -193377653 + AluSx SINE Alu 1 303 -9 1875 148 0 4 chr4 8950717 8951015 -193377332 + AluJb SINE Alu 5 301 0 351 0 0 0 chr4 8951272 8951311 -193377036 + (CA)n Simple_repeat Simple_repeat 2 40 0 423 237 0 0 chr4 8953039 8953132 -193375215 - MIR SINE MIR -133 129 37 250 335 150 21 chr4 8953869 8954102 -193374245 + L2 LINE L2 2968 3230 -42 333 0 0 0 chr4 8954617 8954654 -193373693 + (TG)n Simple_repeat Simple_repeat 2 38 0 339 317 55 23 chr4 8954654 8954770 -193373577 - L2 LINE L2 -285 2987 2876 2088 133 26 0 chr4 8954770 8955072 -193373275 + AluSg SINE Alu 1 310 0 339 317 55 23 chr4 8955072 8955174 -193373173 - L2 LINE L2 -396 2876 2755 1432 233 36 3 chr4 8955350 8955685 -193372662 + MLT2C1 LTR ERVL 1 346 -51 909 174 0 0 chr4 8955715 8955955 -193372392 + (TCCA)n Simple_repeat Simple_repeat 1 240 0 260 286 12 0 chr4 8957325 8957409 -193370938 - L1ME3A LINE L1 -70 6100 6016 189 264 18 73 chr4 8957600 8957710 -193370637 - L2 LINE L2 -220 3052 2949 247 294 39 59 chr4 8958048 8958150 -193370197 - MIR SINE MIR -71 191 92 533 170 18 0 chr4 8958824 8958937 -193369410 + MIR SINE MIR 37 157 -61 696 250 58 10 chr4 8959723 8959931 -193368416 - L1MD2 LINE L1 -4 6355 6138 186 133 0 0 chr4 8959931 8959961 -193368386 + (CGTG)n Simple_repeat Simple_repeat 3 32 0 446 271 7 0 chr4 8962099 8962243 -193366104 + (TG)n Simple_repeat Simple_repeat 2 146 0 255 369 87 0 chr4 8962399 8962594 -193365753 + MIR SINE MIR 20 231 -31 189 0 0 0 chr4 8962920 8962941 -193365406 + (TGAA)n Simple_repeat Simple_repeat 2 22 0 698 204 115 5 chr4 8963120 8963311 -193365036 + MER20 DNA MER1_type 1 212 -7 264 220 110 0 chr4 8963383 8963474 -193364873 + MIR SINE MIR 21 121 -141 2044 122 24 0 chr4 8966528 8966823 -193361524 - AluSx SINE Alu -10 302 1 349 288 176 7 chr4 8968611 8968764 -193359583 + MIR SINE MIR 58 236 -26 459 286 51 60 chr4 8968871 8969105 -193359242 - MIR SINE MIR -17 245 14 702 172 7 7 chr4 8969171 8969322 -193359025 - MER96B DNA MER1_type? -238 179 29 2091 122 7 0 chr4 8969631 8969934 -193358413 + AluSx SINE Alu 1 305 -7 212 167 0 0 chr4 8970002 8970038 -193358309 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 270 304 76 0 chr4 8970474 8970566 -193357781 + MIR SINE MIR 77 175 -87 1575 288 34 58 chr4 8970688 8970884 -193357463 - L1ME1 LINE L1 -67 6099 5900 23 0 0 0 chr4 8970884 8970907 -193357440 + AT_rich Low_complexity Low_complexity 1 23 0 1575 288 34 58 chr4 8970907 8971449 -193356898 - L1ME1 LINE L1 -266 5900 5357 549 86 74 0 chr4 8971449 8971612 -193356735 + (TA)n Simple_repeat Simple_repeat 1 175 0 423 282 60 58 chr4 8971451 8971853 -193356494 + L1MCa LINE L1 1907 6392 -9 * 195 81 14 68 chr4 8971866 8971940 -193356407 + (TTATA)n Simple_repeat Simple_repeat 5 74 0 21 0 0 0 chr4 8971951 8971972 -193356375 + AT_rich Low_complexity Low_complexity 1 21 0 390 129 31 37 chr4 8971976 8972139 -193356208 + (TATAA)n Simple_repeat Simple_repeat 3 164 0 217 64 85 0 chr4 8972141 8972188 -193356159 + (TA)n Simple_repeat Simple_repeat 2 52 0 2105 118 0 0 chr4 8972188 8972476 -193355871 - AluSx SINE Alu -24 288 1 335 200 21 129 chr4 8972476 8972501 -193355846 - L1ME1 LINE L1 -776 5370 5344 703 227 72 139 chr4 8972501 8972999 -193355348 + MER4C LTR ERV1 1 465 0 335 200 21 129 chr4 8972999 8973026 -193355321 - L1ME1 LINE L1 -802 5344 5316 2116 100 0 17 chr4 8973026 8973327 -193355020 - AluSx SINE Alu -16 296 1 335 200 21 129 chr4 8973327 8973413 -193354934 - L1ME1 LINE L1 -830 5316 5246 356 278 48 8 chr4 8973506 8973632 -193354715 - L1MEc LINE L1 -4639 1757 1627 * 631 191 112 7 chr4 8973627 8973779 -193354568 - L1MB8 LINE L1 0 6178 6011 * 1453 284 94 6 chr4 8973777 8974479 -193353868 - L1MEc LINE L1 -4754 1642 879 2033 194 61 27 chr4 8974481 8974925 -193353422 - LTR2B LTR ERV1 0 490 32 358 115 0 16 chr4 8975001 8975062 -193353285 + MADE1 DNA Mariner 21 80 0 252 56 0 28 chr4 8975075 8975111 -193353236 + (TCCC)n Simple_repeat Simple_repeat 2 36 0 1797 178 10 0 chr4 8975111 8975582 -193352765 - AluJo SINE Alu 0 474 1 626 285 95 87 chr4 8975589 8975744 -193352603 - L1MEc LINE L1 -5578 818 666 707 154 8 0 chr4 8975744 8975861 -193352486 - FLAM_C SINE Alu -15 118 1 626 285 95 87 chr4 8975861 8976498 -193351849 - L1MEc LINE L1 -5730 666 20 188 139 0 47 chr4 8977183 8977226 -193351121 + (GGGA)n Simple_repeat Simple_repeat 1 41 0 200 300 71 0 chr4 8977867 8977937 -193350410 - L2 LINE L2 -25 3288 3214 712 236 16 6 chr4 8978459 8978641 -193349706 - Charlie2 DNA MER1_type -38 2824 2641 213 278 48 2 chr4 9029370 9029433 -193298914 - MIR SINE MIR -110 98 37 182 214 0 24 chr4 9029643 9029685 -193298662 - MIR SINE MIR -111 151 111 1606 144 90 7 chr4 9029904 9030182 -193298165 + AluJo SINE Alu 2 302 -10 805 261 105 30 chr4 9030248 9030690 -193297657 + MLT1C LTR MaLR 1 498 -7 192 163 0 0 chr4 9030776 9030819 -193297528 + (TG)n Simple_repeat Simple_repeat 2 44 0 2052 125 0 0 chr4 9030988 9031276 -193297071 + AluSg1 SINE Alu 1 288 -21 1640 250 77 30 chr4 9031358 9032062 -193296285 + L1MD2 LINE L1 5543 6228 -14 509 274 126 0 chr4 9032081 9032296 -193296051 - LTR33A LTR ERVL -22 501 260 1785 104 75 35 chr4 9032298 9032643 -193295704 - THE1B LTR MaLR 0 364 6 782 304 28 30 chr4 9033840 9034202 -193294145 + ERVL LTR ERVL 4873 5233 -531 194 214 0 0 chr4 9034432 9034474 -193293873 - L2 LINE L2 -1 3312 3271 873 225 149 0 chr4 9034759 9035088 -193293259 + MLT1D LTR MaLR 3 380 -125 395 321 35 12 chr4 9035540 9035703 -193292644 - MIR SINE MIR -55 153 38 878 266 61 30 chr4 9036305 9036778 -193291569 - MLT1D LTR MaLR -17 488 1 347 320 23 0 chr4 9036925 9037053 -193291294 + L1ME LINE L1 5522 5652 -469 201 121 0 0 chr4 9038379 9038412 -193289935 + (A)n Simple_repeat Simple_repeat 1 33 0 448 250 0 10 chr4 9038495 9038599 -193289748 - MIR3 SINE MIR -46 162 60 236 307 130 12 chr4 9038888 9039049 -193289298 - MIR SINE MIR -44 218 33 521 198 173 12 chr4 9039154 9039316 -193289031 - MLT1F LTR MaLR -42 500 313 300 277 8 59 chr4 9039320 9039439 -193288908 - MIR SINE MIR -117 145 33 267 291 119 15 chr4 9039575 9039709 -193288638 - MIR3 SINE MIR -51 157 10 194 371 62 21 chr4 9039842 9040036 -193288311 + MIR SINE MIR 8 209 -53 357 316 59 33 chr4 9040811 9040963 -193287384 - L1ME4a LINE L1 -2 6119 5964 2295 100 0 3 chr4 9041752 9042061 -193286286 - AluSc SINE Alu -1 308 1 1931 145 27 0 chr4 9042125 9042422 -193285925 - AluJo SINE Alu -7 305 1 329 172 31 0 chr4 9043292 9043356 -193284991 + MIR SINE MIR 82 147 -61 361 346 31 31 chr4 9043847 9044006 -193284341 + MIR SINE MIR 20 178 -84 243 271 19 37 chr4 9044996 9045103 -193283244 - LTR16C LTR ERVL -41 450 346 206 361 81 68 chr4 9045559 9045880 -193282467 - L2 LINE L2 0 3272 2948 190 297 25 59 chr4 9047499 9047617 -193280730 - L2 LINE L2 -13 3259 3146 591 280 101 49 chr4 9047780 9048205 -193280142 - MLT1L LTR MaLR -27 588 142 239 194 15 60 chr4 9048385 9048452 -193279895 + MIR SINE MIR 46 109 -153 1039 253 210 16 chr4 9048471 9049121 -193279226 - L2 LINE L2 -6 3307 2507 2246 107 3 0 chr4 9050251 9050560 -193277787 - AluSp SINE Alu -3 310 1 695 269 18 6 chr4 9050561 9050732 -193277615 - MIR SINE MIR -66 196 24 426 327 40 10 chr4 9050735 9050934 -193277413 - L1ME LINE L1 -383 5738 5534 2398 87 0 0 chr4 9051150 9051461 -193276886 - AluY SINE Alu 0 311 1 275 321 80 18 chr4 9052502 9052776 -193275571 + L1M4 LINE L1 4112 4402 -1744 1218 25 25 0 chr4 9052789 9052947 -193275400 + MLT2A1 LTR ERVL 1 162 -282 479 335 60 20 chr4 9052949 9053043 -193275304 + L1M4 LINE L1 4966 5055 -1091 2302 103 3 0 chr4 9053043 9053353 -193274994 + AluSx SINE Alu 1 311 -1 479 335 60 20 chr4 9053353 9053509 -193274838 + L1M4 LINE L1 5055 5226 -920 1256 241 117 57 chr4 9053583 9053622 -193274725 - MLT2B1 LTR ERVL -1 519 484 315 0 0 0 chr4 9053622 9053657 -193274690 + (TA)n Simple_repeat Simple_repeat 1 35 0 * 369 43 0 0 chr4 9053656 9053703 -193274644 + (CA)n Simple_repeat Simple_repeat 2 48 0 1256 241 117 57 chr4 9053657 9054152 -193274195 - MLT2B1 LTR ERVL -36 484 2 751 225 113 0 chr4 9054403 9054625 -193273722 - Tigger3(Golem) DNA MER2_type -15 3014 2768 287 353 79 0 chr4 9054741 9054880 -193273467 + MIR SINE MIR 58 207 -55 762 144 0 0 chr4 9054916 9055034 -193273313 - FLAM_A SINE Alu 0 142 25 248 340 131 34 chr4 9055154 9055422 -193272925 + L2 LINE L2 2978 3271 -1 360 272 144 6 chr4 9056328 9056508 -193271839 - MLT1D LTR MaLR 0 505 301 345 265 0 20 chr4 9056572 9056670 -193271677 - MLT1D LTR MaLR -309 196 101 340 246 24 0 chr4 9057408 9057534 -193270813 + CT-rich Low_complexity Low_complexity 4 132 0 2556 42 0 3 chr4 9058048 9058357 -193269990 - AluY SINE Alu -3 308 1 244 99 70 0 chr4 9058424 9058495 -193269852 + (TG)n Simple_repeat Simple_repeat 1 76 0 602 213 20 16 chr4 9058646 9058809 -193269538 - MLT1A1 LTR MaLR 0 396 205 1548 179 4 4 chr4 9059122 9059379 -193268968 - AluJo SINE Alu -55 257 1 269 208 13 52 chr4 9059548 9059603 -193268744 + MIR SINE MIR 70 123 -85 2153 104 20 0 chr4 9059603 9059900 -193268447 - AluSx SINE Alu -9 303 1 269 208 13 52 chr4 9059900 9059921 -193268426 + MIR SINE MIR 123 143 -65 2449 57 0 7 chr4 9060853 9061153 -193267194 - AluY SINE Alu -13 298 1 1960 129 7 0 chr4 9061385 9061696 -193266651 - AluSx SINE Alu 0 313 1 1970 219 65 10 chr4 9063139 9063618 -193264729 + MLT1D LTR MaLR 1 505 0 1341 273 155 0 chr4 9063826 9064310 -193264037 + MER89 LTR ERV1 1 559 0 304 306 124 35 chr4 9064332 9064678 -193263669 - LTR16C LTR ERVL 0 491 115 2070 219 104 2 chr4 9066553 9067101 -193261246 + L1MC2 LINE L1 5741 6344 0 2180 115 3 13 chr4 9067106 9067420 -193260927 + AluSx SINE Alu 1 311 -1 261 293 48 34 chr4 9067732 9067879 -193260468 + MIR3 SINE MIR 29 177 -31 207 279 16 0 chr4 9068105 9068166 -193260181 - L2 LINE L2 -44 3228 3167 2051 134 0 0 chr4 9068558 9068856 -193259491 - AluJb SINE Alu -14 298 1 195 271 34 17 chr4 9069416 9069475 -193258872 - L2 LINE L2 -217 3055 2996 1618 290 44 39 chr4 9071108 9071698 -193256649 + MLT1G1 LTR MaLR 1 593 -2 468 250 96 0 chr4 9072614 9072750 -193255597 - MIR SINE MIR -77 185 37 185 260 82 14 chr4 9074415 9074488 -193253859 + MIR SINE MIR 39 116 -92 2204 118 0 0 chr4 9074779 9075085 -193253262 - AluSg SINE Alu -2 308 3 201 39 0 0 chr4 9075192 9075218 -193253129 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 854 276 60 31 chr4 9075695 9076141 -193252206 + MLT1C LTR MaLR 4 462 -5 1255 251 20 20 chr4 9076150 9076508 -193251839 - MER47A DNA MER2_type -6 360 3 186 333 67 0 chr4 9077002 9077092 -193251255 - MIR SINE MIR -83 125 30 1495 237 84 3 chr4 9077797 9078143 -193250204 - MLT1A2 LTR MaLR 0 374 1 1158 104 50 50 chr4 9078896 9079098 -193249249 + AluJb SINE Alu 111 312 0 1027 244 52 0 chr4 9079153 9079423 -193248924 - Charlie1b DNA MER1_type -239 284 1 432 37 0 0 chr4 9079826 9079880 -193248467 + (TG)n Simple_repeat Simple_repeat 2 55 0 2361 88 0 0 chr4 9080132 9080429 -193247918 + AluSx SINE Alu 1 297 -15 294 328 74 28 chr4 9080431 9080673 -193247674 - MIR SINE MIR -3 259 1 299 310 106 0 chr4 9080928 9081041 -193247306 - MIR SINE MIR -116 146 22 461 266 113 62 chr4 9081874 9082149 -193246198 - L2 LINE L2 -87 3185 2897 191 324 14 28 chr4 9082210 9082281 -193246066 + L2 LINE L2 3223 3292 -21 787 163 0 0 chr4 9083949 9084072 -193244275 + FLAM_C SINE Alu 15 137 -6 241 330 20 20 chr4 9084407 9084520 -193243827 - MIR SINE MIR -85 123 12 6594 90 22 0 chr4 9085341 9086329 -193242018 - L1PA10 LINE L1 0 6168 5175 300 91 0 0 chr4 9086338 9086382 -193241965 + (TTCCC)n Simple_repeat Simple_repeat 1 44 0 3085 128 21 2 chr4 9086382 9086394 -193241953 - L1PA10 LINE L1 -941 5205 5195 2110 129 3 3 chr4 9086394 9086703 -193241644 - AluSq SINE Alu -4 309 1 3085 128 21 2 chr4 9086703 9087262 -193241085 - L1PA10 LINE L1 -951 5195 4623 3186 203 17 16 chr4 9087263 9087898 -193240449 - L1MB3 LINE L1 -2 6181 5546 248 313 24 36 chr4 9087995 9088161 -193240186 + L2 LINE L2 2823 2986 -286 1139 197 171 13 chr4 9088433 9088748 -193239599 - MLT1A1 LTR MaLR 0 365 1 1624 241 75 13 chr4 9089151 9089616 -193238731 - L1MB3 LINE L1 0 6183 5690 247 291 8 103 chr4 9089690 9089807 -193238540 - MIR SINE MIR -34 228 123 2001 189 19 3 chr4 9089904 9090263 -193238084 - MLT1A1 LTR MaLR 0 365 1 529 283 33 69 chr4 9090371 9090647 -193237700 - L1MC4 LINE L1 -369 7673 7408 246 357 179 17 chr4 9090708 9091055 -193237292 - L1MB3 LINE L1 -2109 5699 5297 832 251 164 13 chr4 9092303 9092702 -193235645 + MLT1C LTR MaLR 2 619 -7 439 314 73 5 chr4 9092734 9092925 -193235422 - MIR SINE MIR -12 250 47 315 251 96 36 chr4 9094197 9094364 -193233983 - MER112 DNA MER1_type -11 249 73 652 205 33 60 chr4 9094383 9094598 -193233749 + MLT1D LTR MaLR 1 209 -296 394 269 52 0 chr4 9094713 9094847 -193233500 + MLT1D LTR MaLR 279 419 -86 322 287 36 48 chr4 9094857 9095024 -193233323 + L2 LINE L2 2950 3114 -158 211 286 0 77 chr4 9095743 9095834 -193232513 + MIR3 SINE MIR 110 193 -15 485 256 8 0 chr4 9096122 9096239 -193232108 - MER3 DNA MER1_type -10 199 82 1218 227 30 15 chr4 9096625 9096960 -193231387 - MLT1A1 LTR MaLR -25 340 1 241 200 18 0 chr4 9097106 9097161 -193231186 - MER3 DNA MER1_type -55 154 99 812 258 82 25 chr4 9097292 9097657 -193230690 + MLT1C LTR MaLR 61 446 -21 216 293 65 32 chr4 9098314 9098437 -193229910 - MIR SINE MIR -62 146 20 423 216 18 117 chr4 9098465 9098533 -193229814 + MER20 DNA MER1_type 3 76 -143 1835 157 10 7 chr4 9098533 9098833 -193229514 - AluJo SINE Alu -11 301 1 423 216 18 117 chr4 9098833 9098935 -193229412 + MER20 DNA MER1_type 76 156 -63 274 276 0 23 chr4 9099122 9099209 -193229138 + G-rich Low_complexity Low_complexity 3 87 0 2979 255 60 6 chr4 9100264 9101364 -193226983 + L1MB8 LINE L1 5014 6171 -7 252 363 11 0 chr4 9102215 9102306 -193226041 + MIR SINE MIR 46 137 -125 2489 65 0 0 chr4 9103212 9103518 -193224829 - AluY SINE Alu -5 306 1 2380 94 0 0 chr4 9103528 9103836 -193224511 - AluSc SINE Alu -1 308 1 306 279 23 62 chr4 9103945 9104031 -193224316 + L2 LINE L2 3190 3271 -42 2372 144 22 0 chr4 9104031 9104386 -193223961 - THE1B LTR MaLR -1 363 1 306 279 23 62 chr4 9104386 9104428 -193223919 + L2 LINE L2 3271 3313 0 382 356 12 12 chr4 9104608 9104768 -193223579 + MIR3 SINE MIR 38 197 -11 1493 151 29 210 chr4 9104825 9105301 -193223046 + MLT1B LTR MaLR 1 390 0 210 353 86 0 chr4 9105362 9105478 -193222869 - MIR3 SINE MIR -77 131 6 192 282 186 16 chr4 9106998 9107122 -193221225 + MIR SINE MIR 20 164 -98 218 253 12 49 chr4 9108012 9108174 -193220173 + C-rich Low_complexity Low_complexity 4 159 0 224 294 54 87 chr4 9108451 9108635 -193219712 - MIR3 SINE MIR -24 184 7 342 303 64 0 chr4 9109349 9109458 -193218889 + L2 LINE L2 3156 3271 -1 437 259 95 19 chr4 9109808 9109966 -193218381 - MIR3 SINE MIR -27 181 12 275 267 70 12 chr4 9110045 9110131 -193218216 + MIR SINE MIR 83 173 -89 1864 159 21 0 chr4 9110345 9110635 -193217712 + AluJb SINE Alu 1 296 -16 2379 78 3 0 chr4 9111659 9111967 -193216380 + AluSg SINE Alu 1 309 -1 269 328 94 8 chr4 9112638 9112766 -193215581 - MIR SINE MIR -104 158 20 615 240 67 49 chr4 9114242 9114467 -193213880 - MLT1C LTR MaLR -233 234 6 863 157 167 0 chr4 9115215 9115419 -193212928 + MLT2C1 LTR ERVL 113 350 -47 769 188 22 3 chr4 9115465 9116248 -193212099 + (TCCA)n Simple_repeat Simple_repeat 1 798 0 417 307 17 82 chr4 9116661 9116892 -193211455 + L2 LINE L2 2951 3166 -106 312 316 127 17 chr4 9118226 9118575 -193209772 + MLT1K LTR MaLR 189 566 -22 2260 101 0 0 chr4 9120222 9120519 -193207828 - AluSx SINE Alu -15 297 1 246 254 0 39 chr4 9120980 9121077 -193207270 + GA-rich Low_complexity Low_complexity 1 143 0 253 316 22 15 chr4 9121152 9121288 -193207059 - MER105 DNA DNA -67 137 1 2303 65 7 3 chr4 9122098 9122391 -193205956 + AluY SINE Alu 1 294 -17 1863 114 0 4 chr4 9122400 9122663 -193205684 + AluY SINE Alu 42 303 -8 302 331 44 37 chr4 9122667 9122803 -193205544 + L1ME1 LINE L1 6028 6164 -2 220 372 58 17 chr4 9122831 9123003 -193205344 - MIR SINE MIR -38 224 46 307 326 54 0 chr4 9123247 9123376 -193204971 + MIR3 SINE MIR 13 148 -60 1831 103 0 8 chr4 9123380 9123632 -193204715 + AluSc SINE Alu 1 250 -59 291 214 0 0 chr4 9123632 9123688 -193204659 - MLT1C LTR MaLR -411 56 1 210 214 18 18 chr4 9124589 9124645 -193203702 + (TTCA)n Simple_repeat Simple_repeat 2 57 0 460 333 64 23 chr4 9125476 9125695 -193202652 - MIR SINE MIR -29 233 6 1040 264 65 9 chr4 9126799 9127136 -193201211 - MER70A LTR ERVL -96 376 21 247 288 38 0 chr4 9127490 9127570 -193200777 - MLT1L LTR MaLR -532 83 1 533 301 121 39 chr4 9128318 9128473 -193199874 + L1ME4a LINE L1 4019 4160 -1986 2896 88 5 0 chr4 9128473 9128846 -193199501 - THE1C LTR MaLR 0 375 1 533 301 121 39 chr4 9128846 9129045 -193199302 + L1ME4a LINE L1 4160 4402 -1744 363 354 80 64 chr4 9129375 9129913 -193198434 + L1ME4a LINE L1 4954 5506 -747 280 313 104 9 chr4 9129966 9130081 -193198266 - MIR SINE MIR -13 249 124 346 323 60 8 chr4 9131275 9131408 -193196939 + L1ME4a LINE L1 5978 6117 -4 3529 123 13 11 chr4 9131709 9132325 -193196022 + MER4D LTR ERV1 1 617 -255 4391 68 13 0 chr4 9132325 9132872 -193195475 + MER41A LTR ERV1 1 554 0 3875 112 16 26 chr4 9133044 9133668 -193194679 + MER41A-int LTR ERV1 1 618 -5328 * 11299 123 43 27 chr4 9133654 9134330 -193194017 + MER41A-int LTR ERV1 1079 1743 -4203 2294 98 0 3 chr4 9134330 9134637 -193193710 - AluY SINE Alu -5 306 1 11299 123 43 27 chr4 9134637 9135007 -193193340 + MER41A-int LTR ERV1 1743 2106 -3840 2395 73 0 10 chr4 9135007 9135321 -193193026 + AluY SINE Alu 1 311 0 11299 123 43 27 chr4 9135321 9137445 -193190902 + MER41A-int LTR ERV1 2106 5944 -2 4286 70 20 0 chr4 9137445 9137988 -193190359 + MER41A LTR ERV1 1 554 0 1273 163 53 0 chr4 9137988 9138234 -193190113 + MER4D LTR ERV1 645 903 0 250 376 58 0 chr4 9139372 9139561 -193188786 + MIR SINE MIR 49 248 -14 2166 107 0 10 chr4 9141063 9141361 -193186986 + AluSp SINE Alu 1 295 -18 1735 155 0 68 chr4 9141553 9141875 -193186472 + AluJb SINE Alu 1 300 -12 741 157 8 6 chr4 9142596 9142845 -193185502 - AluJb SINE Alu -14 298 1 199 274 164 0 chr4 9143258 9143331 -193185016 + MIR SINE MIR 53 137 -125 325 282 92 14 chr4 9143982 9144124 -193184223 - L2 LINE L2 -271 3001 2849 418 254 40 0 chr4 9145677 9145803 -193182544 - MER58B DNA MER1_type -7 334 204 1886 135 10 17 chr4 9145974 9146263 -193182084 - AluJo SINE Alu -23 289 3 292 279 54 8 chr4 9148287 9148416 -193179931 + MER106A DNA MER1_type 102 236 0 244 288 12 0 chr4 9148419 9148499 -193179848 + L2 LINE L2 2987 3067 -205 2634 188 9 11 chr4 9149523 9150066 -193178281 - L1PA16 LINE L1 -156 6010 5469 24 0 0 0 chr4 9150205 9150229 -193178118 + AT_rich Low_complexity Low_complexity 1 24 0 245 286 114 9 chr4 9152113 9152218 -193176129 + MIR SINE MIR 28 143 -119 943 173 0 0 chr4 9153656 9153806 -193174541 - AluJb SINE Alu -15 297 148 2093 132 0 0 chr4 9154053 9154356 -193173991 - AluY SINE Alu -8 303 1 243 307 97 29 chr4 9155108 9155294 -193173053 - MIR SINE MIR -30 232 33 259 288 159 18 chr4 9155551 9155720 -193172627 - MIR SINE MIR -38 224 34 2605 30 3 0 chr4 9156579 9156884 -193171463 + AluY SINE Alu 2 307 -4 350 235 65 53 chr4 9157194 9157364 -193170983 + MLT1D LTR MaLR 42 213 -292 193 273 61 0 chr4 9158953 9159019 -193169328 - MIR3 SINE MIR -54 154 85 360 179 0 95 chr4 9159084 9159263 -193169084 + (CACCT)n Simple_repeat Simple_repeat 2 163 0 2424 70 0 0 chr4 9160152 9160454 -193167893 + AluY SINE Alu 1 302 -9 668 313 25 0 chr4 9161027 9161228 -193167119 - MIR SINE MIR -19 243 38 228 291 64 36 chr4 9162156 9162266 -193166081 + L2 LINE L2 3173 3285 -28 2119 116 7 0 chr4 9163690 9163992 -193164355 + AluSx SINE Alu 1 304 -8 1275 162 4 26 chr4 9163993 9164222 -193164125 + AluJo SINE Alu 71 294 -18 188 352 56 40 chr4 9164612 9164737 -193163610 - L3 LINE CR1 -572 1005 879 651 26 0 0 chr4 9164866 9164943 -193163404 + (TATATG)n Simple_repeat Simple_repeat 1 77 0 847 265 56 8 chr4 9165462 9165696 -193162651 - MIR SINE MIR -3 259 15 1342 175 0 43 chr4 9165905 9166139 -193162208 - MER58A DNA MER1_type 0 224 1 468 51 0 0 chr4 9166630 9166689 -193161658 + (TG)n Simple_repeat Simple_repeat 2 60 0 1959 112 0 11 chr4 9166776 9167090 -193161257 - AluSx SINE Alu 0 311 1 763 107 80 0 chr4 9167167 9167279 -193161068 - 5S rRNA rRNA 0 121 1 435 328 75 0 chr4 9167751 9167937 -193160410 + MIR SINE MIR 50 249 -13 461 290 193 0 chr4 9168587 9168763 -193159584 + L2 LINE L2 3021 3230 -42 349 304 48 0 chr4 9168776 9168901 -193159446 + MIR SINE MIR 44 174 -88 549 272 0 0 chr4 9169886 9170428 -193157919 + (TG)n Simple_repeat Simple_repeat 1 542 0 602 259 23 29 chr4 9170466 9170640 -193157707 - MIR SINE MIR -29 233 61 495 294 43 27 chr4 9170721 9170905 -193157442 - MER5A DNA MER1_type 0 189 3 247 185 0 56 chr4 9170931 9170985 -193157362 + L2 LINE L2 3213 3263 -9 302 261 210 0 chr4 9171850 9171969 -193156378 + MIR3 SINE MIR 3 146 -62 997 260 7 11 chr4 9172913 9173190 -193155157 - L1MC3 LINE L1 0 7785 7510 1154 81 7 0 chr4 9173213 9173362 -193154985 - AluSg SINE Alu -160 150 1 1837 193 60 53 chr4 9173364 9173706 -193154641 - L1MC3 LINE L1 -1097 6688 6341 1978 122 7 0 chr4 9173706 9173992 -193154355 - AluJb SINE Alu -24 288 1 1837 193 60 53 chr4 9173992 9174136 -193154211 - L1MC3 LINE L1 -1444 6341 6199 233 116 23 0 chr4 9174143 9174186 -193154161 - L1MC3 LINE L1 -1543 6242 6199 723 171 46 129 chr4 9174192 9174321 -193154026 - L1MC3 LINE L1 -1542 6243 6146 2111 115 0 0 chr4 9174321 9174616 -193153731 + AluSq SINE Alu 5 299 -14 723 171 46 129 chr4 9174616 9174749 -193153598 - L1MC3 LINE L1 -1639 6146 6003 499 319 133 11 chr4 9174766 9175133 -193153214 - L1MC3 LINE L1 -1810 5998 5587 978 276 54 13 chr4 9175512 9175903 -193152444 + L1MC3 LINE L1 7379 7785 0 2325 97 0 0 chr4 9175925 9176225 -193152122 + AluSx SINE Alu 1 300 -12 393 236 52 52 chr4 9176241 9176415 -193151932 + L2 LINE L2 2938 3111 -161 1783 204 75 81 chr4 9176428 9176804 -193151543 - L1MC3 LINE L1 -380 7405 7033 2208 117 3 0 chr4 9176804 9177113 -193151234 - AluSg SINE Alu 0 310 1 1783 204 75 81 chr4 9177113 9177352 -193150995 - L1MC3 LINE L1 -752 7033 6794 2044 119 3 7 chr4 9179912 9180205 -193148142 - AluJo SINE Alu -20 292 1 202 290 130 40 chr4 9180934 9181034 -193147313 - MER5B DNA MER1_type -5 173 65 180 278 19 0 chr4 9181110 9181164 -193147183 - MIR SINE MIR -65 143 89 2029 99 3 20 chr4 9181222 9181542 -193146805 - AluSx SINE Alu 0 315 1 223 182 36 36 chr4 9181595 9181650 -193146697 + MIR SINE MIR 85 139 -69 2095 110 0 0 chr4 9181694 9182038 -193146309 - AluSg SINE Alu 0 344 1 376 272 93 12 chr4 9182254 9182416 -193145931 + MER58A DNA MER1_type 42 216 -8 282 305 70 25 chr4 9182698 9182898 -193145449 + L2 LINE L2 2957 3165 -107 266 274 17 60 chr4 9184183 9184300 -193144047 + MIR SINE MIR 13 124 -138 386 286 110 0 chr4 9184478 9184632 -193143715 - MIR3 SINE MIR -22 186 16 236 258 134 0 chr4 9185049 9185146 -193143201 - MIR SINE MIR -63 145 36 870 268 67 42 chr4 9186236 9186639 -193141708 + MLT1C LTR MaLR 53 465 -2 802 191 64 25 chr4 9187210 9187414 -193140933 + MER20 DNA MER1_type 6 217 -2 300 301 78 2 chr4 9187425 9187561 -193140786 + MIR SINE MIR 31 143 -65 261 250 0 0 chr4 9188129 9188205 -193140142 + (TG)n Simple_repeat Simple_repeat 1 76 0 255 326 101 0 chr4 9189569 9189707 -193138640 + MIR SINE MIR 33 184 -78 605 258 154 41 chr4 9189947 9190292 -193138055 - MLT1C LTR MaLR -66 401 18 242 323 202 0 chr4 9190462 9190586 -193137761 - MIR SINE MIR -6 256 108 183 311 33 0 chr4 9190991 9191052 -193137295 - L2 LINE L2 -2 3270 3208 240 86 0 0 chr4 9192513 9192548 -193135799 + (TG)n Simple_repeat Simple_repeat 1 35 0 225 275 100 0 chr4 9192560 9192640 -193135707 + MIR SINE MIR 90 177 -85 203 193 0 57 chr4 9194625 9194713 -193133634 + CT-rich Low_complexity Low_complexity 2 84 0 219 295 67 0 chr4 9194976 9195081 -193133266 - MIR SINE MIR -62 146 35 188 308 0 0 chr4 9195303 9195355 -193132992 + L2 LINE L2 3221 3272 0 2411 256 152 31 chr4 9195968 9196069 -193132278 - L1MC4 LINE L1 -13 8029 7942 354 80 0 0 chr4 9196069 9196119 -193132228 + (TG)n Simple_repeat Simple_repeat 1 50 0 2411 256 152 31 chr4 9196119 9197130 -193131217 - L1MC4 LINE L1 -100 7942 6783 1789 213 58 11 chr4 9197130 9197563 -193130784 - LTR32 LTR ERVL 0 471 19 2127 96 51 0 chr4 9197609 9197901 -193130446 - AluSx SINE Alu -5 307 1 193 333 31 21 chr4 9197907 9198003 -193130344 - L2 LINE L2 -15 3257 3161 903 242 62 10 chr4 9198381 9198802 -193129545 + MLT1D LTR MaLR 14 486 -19 189 235 29 137 chr4 9199150 9199252 -193129095 + MER5A DNA MER1_type 1 91 -98 2080 74 88 0 chr4 9199738 9200021 -193128326 + AluSx SINE Alu 1 308 -4 291 153 27 54 chr4 9200246 9200357 -193127990 + CT-rich Low_complexity Low_complexity 1 108 0 311 219 31 25 chr4 9200413 9200573 -193127774 + CT-rich Low_complexity Low_complexity 1 161 0 499 283 11 33 chr4 9200603 9200783 -193127564 + C-rich Low_complexity Low_complexity 4 179 0 312 370 25 6 chr4 9202559 9202721 -193125626 + MIR SINE MIR 86 250 -12 318 304 45 9 chr4 9202773 9202835 -193125512 + MIR SINE MIR 48 117 -145 1467 207 51 10 chr4 9202835 9203130 -193125217 + AluJo SINE Alu 1 307 -5 318 304 45 9 chr4 9203130 9203179 -193125168 + MIR SINE MIR 117 163 -99 2051 125 0 13 chr4 9203889 9204192 -193124155 - AluSx SINE Alu -1 311 13 328 336 27 0 chr4 9205036 9205146 -193123201 - MIR SINE MIR -111 151 39 226 298 34 73 chr4 9205881 9206059 -193122288 - MIR3 SINE MIR -30 178 8 262 354 34 0 chr4 9206496 9206628 -193121719 + MIR SINE MIR 45 182 -63 497 305 28 7 chr4 9207023 9207164 -193121183 - MIR3 SINE MIR -46 162 19 243 88 0 0 chr4 9207335 9207369 -193120978 + (TG)n Simple_repeat Simple_repeat 2 35 0 542 105 13 0 chr4 9207675 9207751 -193120596 + MADE1 DNA Mariner 1 77 -3 184 231 0 19 chr4 9208321 9208373 -193119974 + MIR SINE MIR 104 154 -108 1340 250 120 19 chr4 9208992 9209416 -193118931 - MLT1C LTR MaLR 0 467 1 1708 218 114 2 chr4 9210671 9211195 -193117152 - L1MD3 LINE L1 0 8040 7472 2215 107 3 3 chr4 9211582 9211891 -193116456 - AluSx SINE Alu -1 311 3 186 43 0 0 chr4 9211896 9211919 -193116428 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2081 116 0 7 chr4 9212854 9213156 -193115191 - AluSx SINE Alu -11 301 2 398 335 0 28 chr4 9213159 9213341 -193115006 + (CATA)n Simple_repeat Simple_repeat 3 179 0 * 425 328 0 24 chr4 9213246 9213451 -193114896 + (CA)n Simple_repeat Simple_repeat 1 200 0 193 302 105 12 chr4 9213813 9213899 -193114448 - MIR SINE MIR -56 206 113 460 207 36 9 chr4 9218057 9218168 -193110179 - MER81 DNA DNA 0 114 1 196 202 17 34 chr4 9218621 9218740 -193109607 + (TGAG)n Simple_repeat Simple_repeat 4 120 0 2047 260 13 74 chr4 9219343 9219526 -193108821 - L1 LINE L1 -2705 3441 3248 831 135 8 8 chr4 9219526 9219659 -193108688 - FLAM_C SINE Alu 0 133 1 2047 260 13 74 chr4 9219659 9220007 -193108340 - L1 LINE L1 -2898 3248 2982 2016 110 10 7 chr4 9220007 9220298 -193108049 - AluJb SINE Alu -12 300 9 2047 260 13 74 chr4 9220298 9220643 -193107704 - L1 LINE L1 -3164 2982 2617 201 180 20 20 chr4 9221396 9221446 -193106901 + G-rich Low_complexity Low_complexity 6 55 0 655 253 39 28 chr4 9222075 9222257 -193106090 + MER5A DNA MER1_type 6 189 0 861 133 27 12 chr4 9222821 9223084 -193105263 + (TCCA)n Simple_repeat Simple_repeat 1 267 0 903 154 26 5 chr4 9223108 9223687 -193104660 + (TCCA)n Simple_repeat Simple_repeat 1 591 0 903 169 0 0 chr4 9223703 9223875 -193104472 + (TCCA)n Simple_repeat Simple_repeat 4 175 0 452 259 24 0 chr4 9225005 9225136 -193103211 - MIR3 SINE MIR -52 156 45 236 263 0 0 chr4 9227164 9227221 -193101126 - L2 LINE L2 -217 3055 2999 375 244 0 0 chr4 9228473 9228604 -193099743 + (CA)n Simple_repeat Simple_repeat 2 132 0 432 267 0 0 chr4 9228655 9228835 -193099512 + (CA)n Simple_repeat Simple_repeat 1 180 0 218 243 37 37 chr4 9228888 9228995 -193099352 + L2 LINE L2 3004 3110 -162 377 275 9 18 chr4 9230577 9230686 -193097661 - MIR SINE MIR -74 188 81 739 237 16 5 chr4 9231200 9231390 -193096957 - L1MB5 LINE L1 -2 6172 5981 256 307 58 22 chr4 9231977 9232114 -193096233 + MIR3 SINE MIR 4 145 -63 4663 87 12 23 chr4 9232241 9232747 -193095600 + MER41B LTR ERV1 1 500 -135 2083 109 3 7 chr4 9232747 9233049 -193095298 - AluSx SINE Alu -11 301 1 4663 87 12 23 chr4 9233049 9233184 -193095163 + MER41B LTR ERV1 500 635 0 198 323 141 0 chr4 9233184 9233283 -193095064 + MIR SINE MIR 97 209 -53 199 139 0 0 chr4 9233749 9233785 -193094562 - MIR SINE MIR -92 116 81 249 244 24 61 chr4 9233882 9233964 -193094383 - MIR3 SINE MIR -40 168 90 376 370 0 0 chr4 9234153 9234280 -193094067 + L3 LINE CR1 1337 1463 -114 307 283 49 136 chr4 9234535 9234719 -193093628 + MIR SINE MIR 51 218 -44 1143 286 54 52 chr4 9234825 9235422 -193092925 + MLT1E1 LTR MaLR 57 654 0 501 230 37 47 chr4 9236018 9236209 -193092138 + MER51C LTR ERV1 452 640 0 275 321 80 18 chr4 9237394 9237668 -193090679 + L1M4 LINE L1 4112 4402 -1744 1218 25 25 0 chr4 9237681 9237839 -193090508 + MLT2A1 LTR ERVL 1 162 -282 409 322 48 40 chr4 9237841 9237935 -193090412 + L1M4 LINE L1 4966 5058 -1088 2363 85 3 0 chr4 9237935 9238242 -193090105 + AluSx SINE Alu 1 308 -4 409 322 48 40 chr4 9238242 9238374 -193089973 + L1M4 LINE L1 5058 5194 -952 1256 241 117 57 chr4 9238453 9238492 -193089855 - MLT2B1 LTR ERVL -1 519 484 369 0 0 0 chr4 9238492 9238533 -193089814 + (TA)n Simple_repeat Simple_repeat 1 41 0 * 462 18 0 0 chr4 9238532 9238587 -193089760 + (CA)n Simple_repeat Simple_repeat 2 56 0 1256 241 117 57 chr4 9238533 9239036 -193089311 - MLT2B1 LTR ERVL -36 484 2 751 225 113 0 chr4 9239287 9239509 -193088838 - Tigger3(Golem) DNA MER2_type -15 3014 2768 287 353 79 0 chr4 9239625 9239764 -193088583 + MIR SINE MIR 58 207 -55 757 145 0 0 chr4 9239800 9239917 -193088430 - FLAM_A SINE Alu -1 141 25 248 340 131 34 chr4 9240037 9240305 -193088042 + L2 LINE L2 2978 3271 -1 360 272 144 6 chr4 9241211 9241391 -193086956 - MLT1D LTR MaLR 0 505 301 345 265 0 20 chr4 9241455 9241553 -193086794 - MLT1D LTR MaLR -309 196 101 340 246 24 0 chr4 9242291 9242417 -193085930 + CT-rich Low_complexity Low_complexity 4 132 0 1232 118 5 0 chr4 9242931 9243117 -193085230 - AluY SINE Alu -2 309 123 440 202 81 0 chr4 9243370 9243469 -193084878 + MIR SINE MIR 76 182 -80 2113 142 34 31 chr4 9243478 9243923 -193084424 + LTR32 LTR ERVL 13 458 -13 518 283 19 13 chr4 9244315 9244474 -193083873 - MER63A DNA MER1_type -41 169 10 247 237 7 66 chr4 9244587 9244667 -193083680 + MIR3 SINE MIR 93 170 -38 281 297 21 25 chr4 9244774 9244969 -193083378 + L1ME LINE L1 5508 5702 -462 593 314 49 5 chr4 9245531 9245764 -193082583 - MIR SINE MIR -18 244 4 255 157 20 0 chr4 9245865 9245916 -193082431 + L2 LINE L2 3262 3313 0 694 277 163 3 chr4 9246297 9246597 -193081750 + LTR16C LTR ERVL 139 486 -5 302 279 0 0 chr4 9246749 9246817 -193081530 - L2 LINE L2 -208 3064 2997 264 238 69 10 chr4 9247349 9247450 -193080897 - L1ME4a LINE L1 -48 6073 5967 438 238 100 38 chr4 9247481 9247641 -193080706 - L1M4 LINE L1 -1511 4635 4466 446 319 102 12 chr4 9247654 9247913 -193080434 - L1ME4a LINE L1 -202 5919 5632 2532 53 0 0 chr4 9248043 9248345 -193080002 + AluY SINE Alu 1 302 -9 520 255 28 0 chr4 9248584 9248725 -193079622 - L1ME3A LINE L1 -5 6165 6021 1086 202 43 0 chr4 9248740 9248948 -193079399 + MER20 DNA MER1_type 1 217 -2 277 171 158 0 chr4 9249933 9250009 -193078338 - MER96 DNA MER1_type? -86 89 2 356 358 28 17 chr4 9250214 9250390 -193077957 + MIR SINE MIR 6 183 -79 312 287 7 44 chr4 9252227 9252363 -193075984 + MLT1K LTR MaLR 454 584 -4 524 249 57 36 chr4 9252521 9252714 -193075633 + ORSL DNA AcHobo 13 209 -66 1761 196 28 11 chr4 9252800 9253157 -193075190 + MLT1A1 LTR MaLR 3 365 0 300 289 221 29 chr4 9254173 9254381 -193073966 - MIR SINE MIR 0 262 15 286 216 70 12 chr4 9254788 9254900 -193073447 - LTR45 LTR ERV1 -13 609 390 445 287 33 0 chr4 9255025 9255147 -193073200 - MER72 LTR ERV1 -264 458 333 219 270 153 9 chr4 9255300 9255411 -193072936 - MIR SINE MIR -45 217 91 657 229 120 36 chr4 9255912 9256104 -193072243 + MER63A DNA MER1_type 3 210 0 820 241 3 71 chr4 9256623 9256905 -193071442 + HAL1 LINE L1 1465 1727 -780 505 251 87 0 chr4 9256907 9256992 -193071355 + HAL1 LINE L1 1926 2002 -505 231 36 0 0 chr4 9256992 9257020 -193071327 + (CA)n Simple_repeat Simple_repeat 1 28 0 505 251 87 0 chr4 9257020 9257129 -193071218 + HAL1 LINE L1 2002 2137 -370 2239 183 66 2 chr4 9257138 9257649 -193070698 - MER54A LTR ERVL 0 901 147 428 256 13 13 chr4 9257719 9257875 -193070472 + HAL1 LINE L1 2193 2348 -159 1131 139 24 18 chr4 9257879 9258212 -193070135 + Tigger1 DNA MER2_type 26 2413 -5 354 311 8 68 chr4 9258244 9258376 -193069971 + HAL1 LINE L1 2368 2491 -16 2632 29 3 0 chr4 9258376 9258684 -193069663 - AluY SINE Alu -2 309 1 4428 148 87 7 chr4 9258711 9259675 -193068672 - L1MA5 LINE L1 -5 6295 5263 5165 165 45 29 chr4 9259730 9260804 -193067543 - L1 LINE L1 -816 5330 4232 2180 105 3 0 chr4 9260804 9261100 -193067247 - AluSq SINE Alu -16 297 1 5165 165 45 29 chr4 9261100 9261251 -193067096 - L1 LINE L1 -1914 4232 4085 2053 106 10 22 chr4 9261968 9262279 -193066068 - AluSx SINE Alu 0 312 6 247 163 0 0 chr4 9262460 9262503 -193065844 - Alu SINE Alu -259 43 1 602 156 93 70 chr4 9262518 9262745 -193065602 - LTR18B LTR ERVL -146 468 149 1222 121 0 0 chr4 9262760 9263355 -193064992 + ALR/Alpha Satellite centromeric 1 595 -51 284 265 84 12 chr4 9263363 9263446 -193064901 + L2 LINE L2 3183 3271 -42 284 301 32 0 chr4 9264793 9264886 -193063461 - MIR SINE MIR -72 190 95 219 282 56 14 chr4 9265682 9265753 -193062594 - MIR3 SINE MIR -54 154 81 540 323 42 21 chr4 9266111 9266399 -193061948 + L1ME LINE L1 5300 5593 -577 275 304 49 29 chr4 9266917 9267019 -193061328 + MIR3 SINE MIR 78 181 -27 247 265 0 0 chr4 9267179 9267228 -193061119 + L2 LINE L2 3221 3269 -3 24 0 0 0 chr4 9267680 9267704 -193060643 + GC_rich Low_complexity Low_complexity 1 24 0 318 67 0 0 chr4 9268073 9268118 -193060229 + (TTAGGG)n Simple_repeat Simple_repeat 6 50 0 267 248 0 0 chr4 9268648 9268736 -193059611 + MIR SINE MIR 63 146 -62 286 270 46 0 chr4 9269085 9269214 -193059133 + MIR SINE MIR 13 148 -60 2025 102 0 11 chr4 9269218 9269554 -193058793 + AluSx SINE Alu 1 333 0 1525 162 30 4 chr4 9269611 9269876 -193058471 - MLT1B LTR MaLR -2 388 117 637 203 11 0 chr4 9271188 9271365 -193056982 + (TGGG)n Simple_repeat Simple_repeat 1 179 0 533 354 16 0 chr4 9271465 9271657 -193056690 - MIR SINE MIR -60 202 8 2087 133 0 3 chr4 9272331 9272640 -193055707 + AluSx SINE Alu 1 308 -4 1984 116 0 17 chr4 9273815 9274108 -193054239 + AluSx SINE Alu 1 288 -24 446 355 90 30 chr4 9274110 9274414 -193053933 - HAL1 LINE L1 -914 1593 1266 1827 151 20 0 chr4 9274414 9274712 -193053635 - AluJo SINE Alu -8 304 1 446 355 90 30 chr4 9274712 9274739 -193053608 - HAL1 LINE L1 -1241 1266 1242 880 161 0 0 chr4 9275797 9275927 -193052420 + FLAM_C SINE Alu 2 131 -2 2086 101 0 14 chr4 9275943 9276264 -193052083 + AluSx SINE Alu 1 317 0 3564 125 21 21 chr4 9276737 9277264 -193051083 - MER1A DNA MER1_type 0 527 1 860 286 92 45 chr4 9282007 9282256 -193046091 + MLT1C LTR MaLR 2 283 -184 8387 52 12 4 chr4 9282256 9283255 -193045092 - LTR13 LTR ERVK 0 1007 1 860 286 92 45 chr4 9283255 9283449 -193044898 + MLT1C LTR MaLR 283 466 -1 246 263 95 0 chr4 9283725 9283820 -193044527 + MER20 DNA MER1_type 26 129 -90 207 100 0 0 chr4 9284114 9284144 -193044203 + (A)n Simple_repeat Simple_repeat 1 30 0 678 211 157 12 chr4 9284499 9284665 -193043682 + MER21B LTR ERV1 1 190 -673 * 920 206 76 76 chr4 9284660 9284936 -193043411 + MER21B LTR ERV1 581 856 -7 248 250 0 0 chr4 9285005 9285077 -193043270 + L1M4 LINE L1 5106 5177 -969 511 239 71 13 chr4 9285890 9286045 -193042302 - MER20 DNA MER1_type -53 166 3 279 354 42 14 chr4 9287604 9287748 -193040599 + L2 LINE L2 3125 3272 0 870 166 0 0 chr4 9288242 9288417 -193039930 + (TGGA)n Simple_repeat Simple_repeat 4 178 0 29 0 0 0 chr4 9291248 9291277 -193037070 + AT_rich Low_complexity Low_complexity 1 29 0 30 45 0 0 chr4 9291449 9291493 -193036854 + AT_rich Low_complexity Low_complexity 1 44 0 401 298 73 11 chr4 9293278 9293456 -193034891 - MIR SINE MIR -54 208 20 1901 231 70 30 chr4 9293462 9294136 -193034211 + L1M4 LINE L1 3066 3766 -2380 1221 105 0 42 chr4 9294136 9294326 -193034021 + AluSg/x SINE Alu 122 303 -9 1560 168 14 119 chr4 9294327 9294433 -193033914 + L1M4 LINE L1 5279 5395 -783 1985 119 33 0 chr4 9294433 9294736 -193033611 + AluSq SINE Alu 1 313 0 1560 168 14 119 chr4 9294736 9294864 -193033483 + L1M4 LINE L1 5395 5535 -643 748 184 0 16 chr4 9294864 9294989 -193033358 + FLAM_A SINE Alu 1 123 -10 1560 168 14 119 chr4 9294989 9295000 -193033347 + L1M4 LINE L1 5535 5546 -632 2192 107 7 7 chr4 9295000 9295310 -193033037 + AluSg SINE Alu 1 310 0 1560 168 14 119 chr4 9295310 9295508 -193032839 + L1M4 LINE L1 5546 5677 -501 355 314 120 11 chr4 9295832 9296023 -193032324 - MIR SINE MIR -1 261 50 357 319 0 0 chr4 9296079 9296170 -193032177 + MIR SINE MIR 2 92 -170 5568 94 31 9 chr4 9296211 9296974 -193031373 + LTR17 LTR ERV1 1 780 0 5191 72 13 21 chr4 9296991 9297690 -193030657 + HERV17 LTR ERV1 17 709 -7917 1339 117 46 11 chr4 9297960 9298241 -193030106 + HERV17 LTR ERV1 929 1219 -5677 914 67 0 22 chr4 9298247 9298381 -193029966 + HERV17 LTR ERV1 3008 3138 -5488 10923 58 14 3 chr4 9298618 9300005 -193028342 + HERV17 LTR ERV1 3185 4587 -4039 18800 52 8 2 chr4 9300106 9302473 -193025874 + HERV17 LTR ERV1 4767 7147 -1479 281 77 0 0 chr4 9302469 9302508 -193025839 + HERV17 LTR ERV1 7510 7548 -1078 * 2403 38 3 0 chr4 9302498 9302789 -193025558 + HERV17 LTR ERV1 8335 8626 0 4967 108 11 16 chr4 9302789 9303533 -193024814 + LTR17 LTR ERV1 1 740 -40 187 300 17 0 chr4 9304486 9304546 -193023801 + MER5A DNA MER1_type 72 132 -57 792 88 0 0 chr4 9304568 9304670 -193023677 + FLAM_C SINE Alu 9 110 -33 677 295 43 9 chr4 9304707 9304917 -193023430 + LTR16C LTR ERVL 275 491 0 4816 30 2 2 chr4 9304948 9305506 -193022841 - LTR6B LTR ERV1 0 558 1 765 153 8 0 chr4 9305581 9305699 -193022648 + FLAM_A SINE Alu 19 137 -5 183 333 0 25 chr4 9305763 9305844 -193022503 - L2 LINE L2 -932 2382 2304 2245 110 0 0 chr4 9306341 9306642 -193021705 + AluSq SINE Alu 1 301 -12 180 326 126 7 chr4 9307253 9307388 -193020959 - L2 LINE L2 -824 2490 2340 2369 62 0 0 chr4 9308008 9308300 -193020047 - AluY SINE Alu -19 292 1 21 0 0 0 chr4 9308302 9308323 -193020024 + AT_rich Low_complexity Low_complexity 1 21 0 875 164 56 80 chr4 9308604 9308817 -193019530 - MER3 DNA MER1_type 0 209 2 713 241 61 70 chr4 9309016 9309316 -193019031 + MLT1C LTR MaLR 102 390 0 1775 223 43 5 chr4 9309733 9309816 -193018531 + LTR2 LTR ERV1 41 119 -330 207 0 0 0 chr4 9309816 9309839 -193018508 + (TAA)n Simple_repeat Simple_repeat 2 24 0 1775 223 43 5 chr4 9309839 9310149 -193018198 + LTR2 LTR ERV1 119 449 0 3694 155 45 66 chr4 9310149 9310977 -193017370 + Harlequin LTR ERV1 1 845 -6968 2456 77 0 19 chr4 9310977 9311287 -193017060 + AluY SINE Alu 2 305 -6 3694 155 45 66 chr4 9311287 9312278 -193016069 + Harlequin LTR ERV1 845 4331 -3482 1133 230 0 0 chr4 9312278 9312478 -193015869 + Harlequin LTR ERV1 1721 1920 -6506 2283 78 0 30 chr4 9312479 9312775 -193015572 + AluY SINE Alu 11 297 -14 343 247 40 51 chr4 9312795 9312918 -193015429 - L1MC4 LINE L1 -1334 6708 6608 569 239 146 0 chr4 9312918 9313048 -193015299 + Harlequin LTR ERV1 1937 2085 -6341 1940 244 13 2 chr4 9313294 9313691 -193014656 + Harlequin LTR ERV1 2069 2469 -5957 574 248 35 21 chr4 9313671 9313816 -193014531 + Harlequin LTR ERV1 3678 3824 -4602 * 6444 190 21 7 chr4 9313806 9314938 -193013409 + Harlequin LTR ERV1 5148 6295 -2131 1406 216 43 25 chr4 9315012 9315517 -193012830 + Harlequin LTR ERV1 7012 7604 -209 500 204 18 9 chr4 9315497 9315610 -193012737 + Harlequin LTR ERV1 6782 6895 -1 * 1702 199 44 49 chr4 9315683 9316094 -193012253 + LTR2 LTR ERV1 41 449 0 3431 123 11 22 chr4 9317496 9318050 -193010297 - LTR14 LTR ERVK 0 548 1 2397 231 57 19 chr4 9318224 9318820 -193009527 - MLT1E2 LTR MaLR -7 619 1 997 225 22 13 chr4 9319204 9319431 -193008916 + MIR SINE MIR 34 262 0 1345 128 0 5 chr4 9319520 9319707 -193008640 + AluSq SINE Alu 77 262 -51 919 107 15 0 chr4 9320569 9320700 -193007647 - AluJb SINE Alu -179 133 1 2273 111 3 3 chr4 9321297 9321603 -193006744 - AluSq SINE Alu -7 306 1 234 290 176 8 chr4 9322842 9322973 -193005374 + MLT1H LTR MaLR 394 546 -3 1613 136 121 4 chr4 9322989 9323261 -193005086 + AluJb SINE Alu 1 304 -8 240 125 0 0 chr4 9323398 9323438 -193004909 - MER11A LTR ERVK -1226 40 1 1680 120 110 45 chr4 9323821 9324137 -193004210 + AluSg SINE Alu 1 335 0 344 243 79 43 chr4 9324851 9324991 -193003356 + L2 LINE L2 3167 3311 -2 219 240 40 0 chr4 9326459 9326534 -193001813 - MIR SINE MIR -109 153 76 1737 148 44 0 chr4 9326891 9327187 -193001160 + AluSx SINE Alu 1 308 0 282 216 72 64 chr4 9327702 9327827 -193000520 + L2 LINE L2 3186 3311 -2 790 250 103 14 chr4 9328409 9328706 -192999641 - L2 LINE L2 -239 3074 2758 675 216 0 0 chr4 9328777 9328911 -192999436 + AluJo SINE Alu 3 136 -176 746 203 6 37 chr4 9328963 9329126 -192999221 - MER20 DNA MER1_type 0 219 62 1289 87 0 0 chr4 9329183 9329366 -192998981 - L1MA2 LINE L1 0 6304 6122 1593 144 0 4 chr4 9329369 9329612 -192998735 + AluSx SINE Alu 1 242 -70 220 292 15 0 chr4 9330316 9330381 -192997966 - L2 LINE L2 -173 3099 3034 340 270 32 53 chr4 9330606 9330795 -192997552 - L1ME4a LINE L1 -148 5973 5789 5920 160 47 19 chr4 9330818 9331930 -192996417 + Tigger2 DNA MER2_type 1 1143 -1575 865 101 7 101 chr4 9331937 9332086 -192996261 + AluJo SINE Alu 1 135 -177 7609 117 56 76 chr4 9332091 9333481 -192994866 + Tigger2 DNA MER2_type 1134 2495 -223 2270 112 30 0 chr4 9333481 9333784 -192994563 - AluSx SINE Alu 0 312 1 7609 117 56 76 chr4 9333784 9333885 -192994462 + Tigger2 DNA MER2_type 2495 2596 -122 9781 53 1 3 chr4 9333985 9335199 -192993148 - HERV17 LTR ERV1 -3501 5125 3915 597 153 7 109 chr4 9335299 9335361 -192992986 + Tigger2 DNA MER2_type 2586 2628 -80 1771 172 0 14 chr4 9335361 9335652 -192992695 + AluJb SINE Alu 1 287 -25 597 153 7 109 chr4 9335652 9335726 -192992621 + Tigger2 DNA MER2_type 2628 2708 0 502 249 30 77 chr4 9335732 9335901 -192992446 - MIR SINE MIR 0 262 102 284 227 159 0 chr4 9336177 9336265 -192992082 - L2 LINE L2 -7 3306 3205 265 194 206 69 chr4 9336788 9336948 -192991399 - L1MC5 LINE L1 -48 7913 7732 1842 113 60 21 chr4 9337012 9337295 -192991052 - AluSx SINE Alu -18 294 1 1724 171 17 10 chr4 9337299 9337592 -192990755 - AluJb SINE Alu -17 295 1 2326 81 3 3 chr4 9338573 9338868 -192989479 + AluSp SINE Alu 1 295 -18 2341 92 0 0 chr4 9338869 9339182 -192989165 + AluSc SINE Alu 1 313 0 271 145 48 0 chr4 9340065 9340127 -192988220 - L1MCc LINE L1 -6174 249 185 508 216 50 4 chr4 9340581 9340804 -192987543 + MER33 DNA MER1_type 1 324 0 2056 151 6 3 chr4 9341314 9341671 -192986676 + L1PA16 LINE L1 5798 6155 -11 232 273 45 0 chr4 9343160 9343226 -192985121 + MIR SINE MIR 66 134 -74 1900 147 33 3 chr4 9343917 9344217 -192984130 - AluSq SINE Alu -4 309 1 190 250 19 0 chr4 9348245 9348297 -192980050 - L2 LINE L2 -78 3194 3142 237 349 0 0 chr4 9348469 9348552 -192979795 - L1MC5 LINE L1 -168 7793 7711 340 273 108 14 chr4 9348625 9348764 -192979583 - L2 LINE L2 -201 3071 2920 1830 171 10 10 chr4 9353182 9353486 -192974861 - AluJo SINE Alu -8 304 1 1871 198 122 25 chr4 9355764 9356315 -192972032 - Tigger3(Golem) DNA MER2_type -1 3028 2425 1096 144 214 19 chr4 9356315 9356530 -192971817 - AluJb SINE Alu -3 309 53 2767 216 47 8 chr4 9356535 9357156 -192971191 - MER50 LTR ERV1 -7 727 83 4565 116 36 25 chr4 9357158 9357906 -192970441 + MER4E LTR ERV1 3 758 -21 327 158 24 49 chr4 9357945 9358027 -192970320 - MER50 LTR ERV1 -648 86 7 259 105 0 0 chr4 9358033 9358071 -192970276 - AluJb SINE Alu -244 58 21 3886 157 40 11 chr4 9358073 9358819 -192969528 - Tigger3(Golem) DNA MER2_type -616 2413 1646 3309 56 14 5 chr4 9358845 9359289 -192969058 - LTR7 LTR ERV1 -2 448 1 2333 98 45 3 chr4 9359289 9359665 -192968682 - HERVH LTR ERV1 0 7713 7322 1300 128 20 0 chr4 9359663 9359867 -192968480 - HERVH LTR ERV1 -1894 5819 5612 * 4226 146 8 1 chr4 9359886 9360544 -192967803 - HERVH LTR ERV1 -2564 5149 4488 22507 96 15 25 chr4 9360547 9364706 -192963641 - HERVH LTR ERV1 -3721 3992 1 3523 62 7 7 chr4 9364708 9365156 -192963191 - LTR7 LTR ERV1 -2 448 1 2073 179 40 109 chr4 9365156 9365758 -192962589 - Tigger3(Golem) DNA MER2_type -1391 1638 1079 2981 163 47 29 chr4 9365758 9365896 -192962451 + LTR8A LTR ERV1 1 135 -592 2159 85 0 3 chr4 9365896 9366229 -192962118 - AluSx SINE Alu 0 332 1 2981 163 47 29 chr4 9366229 9366702 -192961645 + LTR8A LTR ERV1 135 624 -103 6816 139 95 112 chr4 9366704 9368423 -192959924 - pTR5 LTR ERV1 -5 2433 744 652 184 0 0 chr4 9368423 9368537 -192959810 + LTR8A LTR ERV1 614 727 0 1756 151 38 0 chr4 9368537 9368824 -192959523 - Tigger3(Golem) DNA MER2_type -1947 1082 785 867 105 0 59 chr4 9368824 9368975 -192959372 + LTR8 LTR ERV1 1 142 -549 2045 101 14 22 chr4 9368975 9369503 -192958844 + MER4A LTR ERV1 1 664 0 3066 175 9 30 chr4 9369503 9370068 -192958279 + LTR8 LTR ERV1 139 691 0 1717 196 9 92 chr4 9370068 9370527 -192957820 - Tigger3(Golem) DNA MER2_type -2241 788 369 4556 104 7 35 chr4 9370545 9371226 -192957121 + MER4A LTR ERV1 1 662 -2 646 88 8 96 chr4 9371234 9371359 -192956988 - MER4A LTR ERV1 -522 142 29 281 242 0 0 chr4 9371359 9371421 -192956926 - Tigger3(Golem) DNA MER2_type -2963 66 5 430 243 43 3 chr4 9371708 9371858 -192956489 - MIR SINE MIR -62 146 1 379 342 75 5 chr4 9371892 9372091 -192956256 - MER113 DNA MER1_type? -308 213 1 1632 152 147 134 chr4 9372171 9372797 -192955550 + MER51A LTR ERV1 1 634 0 201 74 0 0 chr4 9373228 9373255 -192955092 + (T)n Simple_repeat Simple_repeat 1 27 0 34 24 0 0 chr4 9373271 9373312 -192955035 + AT_rich Low_complexity Low_complexity 1 41 0 3286 96 111 50 chr4 9373390 9373815 -192954532 + LTR61 LTR ERV1 1 471 -124 2271 74 0 0 chr4 9373815 9374122 -192954225 + AluY SINE Alu 1 307 0 3286 96 111 50 chr4 9374122 9374256 -192954091 + LTR61 LTR ERV1 471 595 0 455 355 46 30 chr4 9374467 9374771 -192953576 - L1ME LINE L1 -5653 552 168 1544 102 9 13 chr4 9374778 9375004 -192953343 - MSTA LTR MaLR 0 428 204 245 312 45 38 chr4 9375659 9375816 -192952531 + MER67B LTR ERV1 4 161 -500 209 211 18 0 chr4 9375970 9376027 -192952320 + (GGGTG)n Simple_repeat Simple_repeat 4 61 0 1195 217 11 22 chr4 9376088 9376365 -192951982 + L1PA15 LINE L1 5891 6164 -1 1522 147 139 8 chr4 9376380 9376638 -192951709 + AluJo SINE Alu 5 296 -6 2001 137 0 13 chr4 9376639 9376954 -192951393 + AluSx SINE Alu 1 311 -1 257 330 59 8 chr4 9376958 9377076 -192951271 + MER67A LTR ERV1 403 526 -17 1770 141 0 17 chr4 9377084 9377374 -192950973 - AluSx SINE Alu -10 302 18 194 250 42 0 chr4 9377564 9377612 -192950735 - L2 LINE L2 -23 3290 3241 637 277 69 26 chr4 9377790 9378021 -192950326 + MIR SINE MIR 19 259 -3 226 344 0 0 chr4 9378091 9378152 -192950195 + polypyrimidine Low_complexity Low_complexity 5 65 0 187 349 63 24 chr4 9378199 9378325 -192950022 + MIR3 SINE MIR 58 188 -20 1088 227 175 58 chr4 9378812 9379327 -192949020 - MLT1E LTR MaLR -17 576 2 193 246 108 0 chr4 9379506 9379571 -192948776 + MIR3 SINE MIR 85 156 -52 385 292 48 30 chr4 9382025 9382128 -192946219 - MIR SINE MIR -74 188 79 2218 139 50 6 chr4 9382128 9382487 -192945860 + THE1C LTR MaLR 1 375 0 385 292 48 30 chr4 9382487 9382551 -192945796 - MIR SINE MIR -183 79 18 291 262 60 0 chr4 9383952 9384036 -192944311 + CT-rich Low_complexity Low_complexity 5 93 0 2172 127 0 0 chr4 9384317 9384625 -192943722 - AluSq SINE Alu -5 308 1 262 80 40 0 chr4 9385611 9385661 -192942686 + GA-rich Low_complexity Low_complexity 2 53 0 329 155 17 0 chr4 9385807 9385865 -192942482 - LTR16A1 LTR ERVL -1 456 398 290 239 15 0 chr4 9386027 9386094 -192942253 - MIR SINE MIR -113 149 82 221 276 86 9 chr4 9386383 9386488 -192941859 - L2 LINE L2 -974 2340 2228 1015 214 58 69 chr4 9386602 9386995 -192941352 - MLT1D LTR MaLR -113 392 4 538 167 65 51 chr4 9387782 9387920 -192940427 + MLT1D LTR MaLR 3 142 -363 556 144 0 27 chr4 9387926 9388037 -192940310 + Ricksha DNA DNA 8 115 -1139 * 1474 123 4 41 chr4 9388023 9388267 -192940080 + Ricksha DNA DNA 1710 1944 -1302 * 2859 136 36 51 chr4 9388257 9388479 -192939868 + Ricksha DNA DNA 2259 2483 -763 2103 115 0 13 chr4 9388479 9388783 -192939564 - AluSx SINE Alu -10 302 3 2859 136 36 51 chr4 9388783 9389172 -192939175 + Ricksha DNA DNA 2483 2861 -385 780 108 234 0 chr4 9389179 9389337 -192939010 + Ricksha DNA DNA 2534 2728 -126 1393 137 18 18 chr4 9389341 9389568 -192938779 - AluSx SINE Alu -22 290 64 2088 128 9 23 chr4 9389568 9389911 -192938436 - THE1B LTR MaLR -26 338 1 899 293 46 16 chr4 9389916 9390489 -192937858 + L1ME LINE L1 5100 5691 -479 1858 93 3 68 chr4 9390668 9390989 -192937358 - AluSq SINE Alu -6 307 8 233 203 65 130 chr4 9391100 9391223 -192937124 + L1ME3A LINE L1 6039 6153 -17 1921 153 0 3 chr4 9391378 9391686 -192936661 - AluJb SINE Alu -5 307 1 217 357 62 23 chr4 9391686 9391807 -192936540 - L2 LINE L2 -12 3301 3173 355 306 59 27 chr4 9391880 9392099 -192936248 - L2 LINE L2 -85 3187 2962 202 326 53 0 chr4 9392123 9392218 -192936129 + L2 LINE L2 2945 3044 -269 1540 233 51 53 chr4 9392482 9392917 -192935430 + LTR26 LTR ERV1 1 436 -167 1835 161 10 3 chr4 9392917 9393227 -192935120 + AluJo SINE Alu 1 312 0 1540 233 51 53 chr4 9393227 9393285 -192935062 + LTR26 LTR ERV1 436 493 -110 245 303 59 8 chr4 9393905 9394024 -192934323 + MIR3 SINE MIR 59 183 -25 2566 50 0 0 chr4 9395090 9395393 -192932954 + AluY SINE Alu 1 303 -8 383 231 33 0 chr4 9396284 9396375 -192931972 + MIR3 SINE MIR 61 154 -54 757 278 66 66 chr4 9396524 9396873 -192931474 + MLT1J LTR MaLR 157 505 -6 2386 258 27 0 chr4 9397061 9397754 -192930593 + L1M4 LINE L1 3276 3987 -2159 2129 130 0 0 chr4 9397830 9398137 -192930210 + AluSx SINE Alu 1 307 -5 293 226 48 0 chr4 9398153 9398237 -192930110 + L1M4 LINE L1 4643 4730 -1416 225 285 154 32 chr4 9398264 9398387 -192929960 - MIR SINE MIR -70 192 55 * 321 291 27 9 chr4 9398378 9398488 -192929859 + L2 LINE L2 3158 3269 -3 313 286 0 0 chr4 9399041 9399118 -192929229 - MIR SINE MIR -77 185 109 315 0 0 0 chr4 9399118 9399153 -192929194 + (TGAA)n Simple_repeat Simple_repeat 4 38 0 269 317 60 11 chr4 9400139 9400325 -192928022 - MIR SINE MIR -1 261 64 199 252 191 17 chr4 9400410 9400525 -192927822 - L2 LINE L2 -181 3091 2957 306 404 0 0 chr4 9400561 9400727 -192927620 + L1M4 LINE L1 4879 5044 -1102 2106 126 3 22 chr4 9400727 9401044 -192927303 + AluSx SINE Alu 1 311 -1 259 281 112 0 chr4 9401422 9401511 -192926836 + MER5C DNA MER1_type 11 109 -215 224 333 30 20 chr4 9402776 9402875 -192925472 - MIR SINE MIR -113 149 50 372 289 92 80 chr4 9403411 9403650 -192924697 - L1ME1 LINE L1 0 6164 5920 855 149 0 15 chr4 9403650 9403784 -192924563 + FLAM_C SINE Alu 1 132 -1 406 179 51 103 chr4 9403988 9404144 -192924203 - L1MDa LINE L1 -4924 1482 1335 1594 201 23 18 chr4 9404154 9404538 -192923809 - L1MB7 LINE L1 -16 6168 5783 1787 177 3 0 chr4 9404551 9404856 -192923491 - AluJb SINE Alu -6 306 1 951 119 8 0 chr4 9404856 9404990 -192923357 - AluJo SINE Alu -177 135 1 2627 222 106 88 chr4 9404990 9405372 -192922975 - L1MB7 LINE L1 -392 5786 5412 1520 239 42 22 chr4 9405372 9405728 -192922619 - MLT1A1 LTR MaLR 0 365 3 2627 222 106 88 chr4 9405728 9406266 -192922081 - L1MB7 LINE L1 -766 5412 4885 604 178 178 38 chr4 9406266 9406399 -192921948 - AluJb SINE Alu -21 291 131 1967 135 10 0 chr4 9406399 9406688 -192921659 - AluSx SINE Alu -20 292 1 604 178 178 38 chr4 9406688 9406711 -192921636 - AluJb SINE Alu -181 131 113 2627 222 106 88 chr4 9406711 9407443 -192920904 - L1MB7 LINE L1 -1293 4885 3934 1956 129 0 7 chr4 9407445 9407731 -192920616 + AluSq SINE Alu 1 329 0 406 0 0 0 chr4 9407731 9407776 -192920571 + (TAA)n Simple_repeat Simple_repeat 2 180 0 857 288 30 44 chr4 9407795 9407855 -192920492 - L1MDa LINE L1 -5063 1346 1287 1565 184 3 58 chr4 9407855 9408182 -192920165 - AluJo SINE Alu -3 309 1 857 288 30 44 chr4 9408182 9408552 -192919795 - L1MDa LINE L1 -5122 1287 922 409 99 0 113 chr4 9408562 9408633 -192919714 + AluS SINE Alu 9 71 -242 2082 124 29 29 chr4 9408633 9408979 -192919368 - MER4D LTR ERV1 -556 347 2 440 267 31 63 chr4 9408981 9409172 -192919175 + MLT1J1 LTR MaLR 235 419 -27 1763 149 4 4 chr4 9409328 9409636 -192918711 + AluSx SINE Alu 3 310 0 1938 156 0 0 chr4 9409975 9410282 -192918065 - AluJb SINE Alu -1 311 5 468 188 170 0 chr4 9410628 9410739 -192917608 + MER45C DNA AcHobo 58 187 -766 4710 132 101 11 chr4 9410739 9411316 -192917031 + MER4D LTR ERV1 1 675 -228 2183 137 16 44 chr4 9411316 9411702 -192916645 - THE1C LTR MaLR 0 375 1 4710 132 101 11 chr4 9411702 9411945 -192916402 + MER4D LTR ERV1 675 895 -8 353 273 91 0 chr4 9411975 9412085 -192916262 + MER45C DNA AcHobo 284 403 -550 637 297 86 0 chr4 9412085 9412294 -192916053 + MER45C DNA AcHobo 706 932 -21 274 333 19 19 chr4 9412555 9412663 -192915684 - L2 LINE L2 -3 3269 3162 231 279 33 41 chr4 9413408 9413530 -192914817 - L2 LINE L2 -235 3037 2917 265 235 49 49 chr4 9415251 9415353 -192912994 - MIR SINE MIR -90 118 17 282 350 148 11 chr4 9415498 9415681 -192912666 + MIR SINE MIR 49 256 -6 393 177 25 13 chr4 9416917 9416996 -192911351 - MIR SINE MIR -77 185 106 594 263 119 19 chr4 9417122 9417505 -192910842 - MLT1C LTR MaLR -9 458 64 1854 155 13 3 chr4 9417887 9418190 -192910157 - AluJb SINE Alu -6 306 1 456 141 65 11 chr4 9418290 9418382 -192909965 + AluSg/x SINE Alu 193 289 -20 201 333 127 24 chr4 9418571 9418784 -192909563 - L2 LINE L2 -253 3060 2826 1891 104 16 167 chr4 9420013 9420455 -192907892 + THE1C LTR MaLR 1 375 0 189 280 115 48 chr4 9420840 9421086 -192907261 - L2 LINE L2 -277 3036 2722 915 260 108 25 chr4 9422312 9422674 -192905673 - LTR34 LTR ERV1 -4 695 304 353 222 89 0 chr4 9422677 9422767 -192905580 + MLT1D LTR MaLR 6 103 -402 476 163 0 12 chr4 9422776 9422856 -192905491 + MER4A LTR ERV1 20 98 -566 * 1604 177 6 22 chr4 9422852 9423202 -192905145 + MER4A LTR ERV1 257 659 -5 333 243 56 9 chr4 9423344 9423451 -192904896 + MLT1D LTR MaLR 285 396 -71 788 155 21 14 chr4 9423703 9423845 -192904502 + MER4B LTR ERV1 1 143 -467 * 2743 102 13 0 chr4 9423838 9424232 -192904115 + LTR8 LTR ERV1 293 691 0 1058 264 60 31 chr4 9424723 9425144 -192903203 + MLT2B1 LTR ERVL 7 517 -37 211 93 47 0 chr4 9425144 9425187 -192903160 + CT-rich Low_complexity Low_complexity 2 46 0 257 112 0 5 chr4 9425187 9425241 -192903106 + MLT2B1 LTR ERVL 480 519 -1 377 247 0 12 chr4 9425252 9425337 -192903010 - MER63 DNA MER1_type -299 762 679 907 191 98 16 chr4 9426441 9426635 -192901712 + MSTD LTR MaLR 187 396 0 226 333 0 0 chr4 9426985 9427057 -192901290 + MLT1L LTR MaLR 3 74 -541 1930 137 0 31 chr4 9427634 9427955 -192900392 - AluSx SINE Alu -1 311 1 702 257 91 53 chr4 9427992 9428257 -192900090 + MLT1J LTR MaLR 234 508 -3 227 359 35 7 chr4 9428812 9428957 -192899390 + L2 LINE L2 2368 2516 -798 285 292 115 9 chr4 9428966 9429079 -192899268 - L3 LINE CR1 -100 1477 1353 189 189 38 19 chr4 9429062 9429115 -192899232 + L2 LINE L2 2921 2974 -340 * 257 306 65 0 chr4 9429429 9429537 -192898810 + L2 LINE L2 3155 3269 -3 216 225 127 0 chr4 9429601 9429672 -192898675 + MIR SINE MIR 119 198 -64 199 133 0 0 chr4 9429683 9429713 -192898634 + MIR SINE MIR 116 145 -63 1969 147 0 0 chr4 9430193 9430492 -192897855 - AluSx SINE Alu -13 299 1 535 211 92 66 chr4 9430625 9430852 -192897495 + MLT1E1 LTR MaLR 1 233 -391 736 262 91 18 chr4 9430892 9431167 -192897180 + MLT1E1 LTR MaLR 359 653 -1 1708 153 76 138 chr4 9431454 9431798 -192896549 + Tigger2a DNA MER2_type 1 310 -2398 2109 132 0 0 chr4 9431798 9432109 -192896238 + AluSx SINE Alu 1 311 -1 1708 153 76 138 chr4 9432109 9432227 -192896120 + Tigger2a DNA MER2_type 310 434 0 180 161 0 0 chr4 9433049 9433080 -192895267 + L2 LINE L2 3238 3268 -4 2013 112 14 0 chr4 9433269 9433564 -192894783 - AluSq SINE Alu -14 299 1 190 107 0 0 chr4 9434019 9434047 -192894300 + MIR SINE MIR 117 144 -118 245 247 206 0 chr4 9435191 9435288 -192893059 - MIR SINE MIR -61 147 31 1049 233 84 104 chr4 9435798 9436202 -192892145 + MLT2C1 LTR ERVL 1 396 -1 331 276 112 8 chr4 9436243 9436377 -192891970 - L2 LINE L2 0 3313 3166 566 311 48 0 chr4 9436910 9437077 -192891270 + MER63A DNA MER1_type 1 175 -35 420 330 40 44 chr4 9437520 9437702 -192890645 + MIR SINE MIR 26 208 -54 2298 96 0 0 chr4 9437702 9438005 -192890342 + AluSg SINE Alu 1 303 -7 420 330 40 44 chr4 9438005 9438049 -192890298 + MIR SINE MIR 208 251 -11 237 244 0 0 chr4 9438075 9438161 -192890186 + (CACCAT)n Simple_repeat Simple_repeat 5 90 0 2491 139 93 14 chr4 9438176 9438606 -192889741 - MER4C LTR ERV1 0 465 2 8857 162 53 56 chr4 9438631 9439944 -192888403 - MER4C-int LTR ERV1 -14 6584 5268 1622 155 30 33 chr4 9439944 9440247 -192888100 + AluSx SINE Alu 1 302 -10 2025 122 10 7 chr4 9440255 9440549 -192887798 + AluSg SINE Alu 1 295 -15 8857 162 53 56 chr4 9440549 9441369 -192886978 - MER4C-int LTR ERV1 -1337 5261 4440 207 0 0 0 chr4 9441369 9441392 -192886955 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 8857 162 53 56 chr4 9441392 9441545 -192886802 - MER4C-int LTR ERV1 -2158 4440 4288 2133 69 54 0 chr4 9441545 9441822 -192886525 - AluY SINE Alu -19 292 1 8857 162 53 56 chr4 9441822 9441904 -192886443 - MER4C-int LTR ERV1 -2310 4288 4207 279 0 0 0 chr4 9441904 9441935 -192886412 + (TTA)n Simple_repeat Simple_repeat 1 31 0 8857 162 53 56 chr4 9441935 9442316 -192886031 - MER4C-int LTR ERV1 -2391 4207 3826 2044 132 7 0 chr4 9442316 9442620 -192885727 + AluSq SINE Alu 1 306 -7 8857 162 53 56 chr4 9442620 9442723 -192885624 - MER4C-int LTR ERV1 -2772 3826 3724 1738 157 0 0 chr4 9442723 9442991 -192885356 + AluJb SINE Alu 1 268 -44 8857 162 53 56 chr4 9442991 9443258 -192885089 - MER4C-int LTR ERV1 -2874 3724 3652 2127 103 10 16 chr4 9443258 9443569 -192884778 + AluSc SINE Alu 1 309 0 8857 162 53 56 chr4 9443569 9443720 -192884627 - MER4C-int LTR ERV1 -2946 3652 3502 1190 206 70 86 chr4 9443722 9444396 -192883951 - MER4A LTR ERV1 0 779 1 3816 159 45 14 chr4 9444397 9445125 -192883222 - MER4D LTR ERV1 -150 753 3 1358 167 52 114 chr4 9445158 9445245 -192883102 - MER4C-int LTR ERV1 -4343 2415 2324 1453 133 0 0 chr4 9445245 9445455 -192882892 - AluSq SINE Alu -16 297 88 1358 167 52 114 chr4 9445455 9445996 -192882351 - MER4C-int LTR ERV1 -4434 2324 1826 732 140 0 0 chr4 9445996 9446110 -192882237 - AluSg/x SINE Alu -15 297 184 1460 158 40 62 chr4 9446282 9446682 -192881665 - MER4C-int LTR ERV1 -5523 1235 845 884 118 0 0 chr4 9446763 9446890 -192881457 - AluJb SINE Alu -185 127 1 5554 139 33 12 chr4 9446895 9447797 -192880550 - MER4B-int LTR ERV1 -2692 4066 3146 495 301 62 40 chr4 9447797 9448023 -192880324 - MIR SINE MIR -11 251 21 236 383 40 20 chr4 9448444 9448593 -192879754 + MIR SINE MIR 63 214 -48 936 140 33 0 chr4 9449134 9449284 -192879063 - FRAM SINE Alu -12 164 10 330 95 19 3 chr4 9450050 9450269 -192878078 + AluSx SINE Alu 1 295 -7 1802 163 0 3 chr4 9450269 9450564 -192877783 - AluJb SINE Alu -18 294 1 194 342 38 0 chr4 9451011 9451090 -192877257 - L2 LINE L2 0 3272 3191 206 306 48 32 chr4 9451357 9451481 -192876866 - MIR SINE MIR -14 248 123 327 169 0 0 chr4 9451764 9451835 -192876512 + (TG)n Simple_repeat Simple_repeat 1 71 0 364 295 20 67 chr4 9453063 9453212 -192875135 - MIR SINE MIR -19 243 102 180 204 23 0 chr4 9453216 9453260 -192875087 - MIR SINE MIR -107 155 111 307 215 9 47 chr4 9453721 9453828 -192874519 + CT-rich Low_complexity Low_complexity 1 103 0 285 286 76 0 chr4 9457655 9457774 -192870573 + (CATG)n Simple_repeat Simple_repeat 1 128 0 273 360 0 0 chr4 9458115 9458201 -192870146 - L2 LINE L2 -1 3271 3186 316 327 73 7 chr4 9458403 9458553 -192869794 - MARNA DNA Mariner -30 556 397 192 40 0 0 chr4 9459415 9459440 -192868907 + (CCTG)n Simple_repeat Simple_repeat 2 26 0 186 359 126 0 chr4 9460517 9460620 -192867727 - MIR SINE MIR -114 148 33 215 292 0 0 chr4 9461198 9461269 -192867078 + MIR SINE MIR 63 134 -74 207 171 0 0 chr4 9462133 9462168 -192866179 + (TGAG)n Simple_repeat Simple_repeat 4 38 0 1903 138 0 14 chr4 9462521 9462812 -192865535 - AluJb SINE Alu -25 287 1 180 0 0 0 chr4 9463552 9463572 -192864775 + (T)n Simple_repeat Simple_repeat 1 20 0 266 227 61 0 chr4 9465304 9465370 -192862977 - HsTC2 DNA Tc2 -4 1894 1825 21 0 0 0 chr4 9466408 9466429 -192861918 + GC_rich Low_complexity Low_complexity 1 21 0 244 219 68 14 chr4 9468088 9468161 -192860186 + MIR SINE MIR 46 122 -140 1108 197 58 39 chr4 9468303 9468412 -192859935 - MER33 DNA MER1_type -2261 324 219 2397 74 0 0 chr4 9468412 9468710 -192859637 - AluY SINE Alu -13 298 1 1108 197 58 39 chr4 9468710 9468910 -192859437 - MER33 DNA MER1_type -2366 219 9 1148 271 75 29 chr4 9469308 9469692 -192858655 + MLT1C LTR MaLR 1 409 -58 2256 95 7 0 chr4 9469692 9469988 -192858359 - AluSg SINE Alu -12 298 1 1148 271 75 29 chr4 9469988 9470046 -192858301 + MLT1C LTR MaLR 409 463 -4 417 237 22 74 chr4 9470208 9470343 -192858004 - MIR SINE MIR -29 233 106 209 359 106 0 chr4 9471448 9471590 -192856757 - MIR SINE MIR -67 195 39 350 330 26 0 chr4 9472854 9472969 -192855378 + MIR SINE MIR 75 192 -70 212 394 44 22 chr4 9473484 9473621 -192854726 + MIR SINE MIR 91 230 -32 23 0 0 0 chr4 9473760 9473783 -192854564 + AT_rich Low_complexity Low_complexity 1 23 0 863 144 0 8 chr4 9473783 9473915 -192854432 - FLAM_C SINE Alu -1 132 2 305 285 149 14 chr4 9475455 9475669 -192852678 - MER76 LTR ERV -444 244 2 428 281 36 36 chr4 9475939 9476135 -192852212 + MER3 DNA MER1_type 14 209 0 214 370 11 22 chr4 9476314 9476406 -192851941 - L2 LINE L2 0 3272 3182 1969 85 0 4 chr4 9478120 9478380 -192849967 - AluSq SINE Alu -14 299 41 318 236 0 14 chr4 9478841 9478913 -192849434 - MIR SINE MIR -64 144 74 782 147 17 17 chr4 9478946 9479123 -192849224 + (TCCA)n Simple_repeat Simple_repeat 4 180 0 523 170 33 0 chr4 9479144 9479297 -192849050 + (TCCA)n Simple_repeat Simple_repeat 1 158 0 227 194 183 32 chr4 9480657 9480750 -192847597 + MIR SINE MIR 109 215 -47 210 222 0 0 chr4 9482280 9482334 -192846013 + (TG)n Simple_repeat Simple_repeat 1 54 0 205 393 40 0 chr4 9482355 9482505 -192845842 - L2 LINE L2 -192 3080 2925 889 192 7 9 chr4 9482652 9483114 -192845233 + (CTCA)n Simple_repeat Simple_repeat 1 461 0 825 138 0 0 chr4 9484637 9484782 -192843565 + (CTCA)n Simple_repeat Simple_repeat 3 147 0 231 226 24 60 chr4 9485478 9485562 -192842785 + L2 LINE L2 2900 2980 -292 310 219 24 137 chr4 9486127 9486332 -192842015 - MER53 DNA DNA 0 189 8 2363 87 0 0 chr4 9486796 9487096 -192841251 - AluSc SINE Alu -9 300 1 311 333 115 19 chr4 9487657 9487813 -192840534 + MIR SINE MIR 6 176 -86 262 346 74 0 chr4 9488448 9488610 -192839737 - L2 LINE L2 -174 3098 2925 327 306 101 34 chr4 9490107 9490375 -192837972 - L2 LINE L2 -92 3180 2895 318 267 56 0 chr4 9490925 9491015 -192837332 - MIR SINE MIR -120 142 48 488 266 145 5 chr4 9491077 9491284 -192837063 + ORSL DNA AcHobo 1 236 -39 243 245 38 33 chr4 9491888 9492008 -192836339 - MIR SINE MIR -64 144 21 264 331 16 16 chr4 9492691 9492815 -192835532 - L2 LINE L2 -212 3060 2937 972 225 80 37 chr4 9494097 9494422 -192833925 - MLT1B LTR MaLR -48 342 4 2121 98 0 53 chr4 9495365 9495683 -192832664 - AluSx SINE Alu -11 301 1 1636 211 107 31 chr4 9495795 9496208 -192832139 + MER65A LTR ERV1 1 444 -1 330 269 35 58 chr4 9496210 9496342 -192832005 - L1MC4a LINE L1 -1087 6721 6592 1644 115 48 83 chr4 9496342 9496656 -192831691 + AluSg1 SINE Alu 1 303 -6 330 269 35 58 chr4 9496656 9496694 -192831653 - L1MC4a LINE L1 -1216 6592 6555 318 345 79 0 chr4 9497232 9497371 -192830976 + HAL1 LINE L1 1114 1263 -1244 1993 96 0 38 chr4 9497371 9497693 -192830654 + AluSx SINE Alu 1 311 0 353 355 103 34 chr4 9497788 9497973 -192830374 - MIR SINE MIR 0 262 56 2451 58 0 13 chr4 9497973 9498286 -192830061 + AluY SINE Alu 1 309 -2 353 355 103 34 chr4 9498286 9498334 -192830013 - MIR SINE MIR -206 56 13 2278 81 0 0 chr4 9499023 9499318 -192829029 + AluSg SINE Alu 1 295 -15 932 231 80 37 chr4 9499748 9500073 -192828274 - MLT1B LTR MaLR -48 342 4 243 282 168 30 chr4 9500659 9500790 -192827557 + MIR SINE MIR 44 192 -70 263 238 48 0 chr4 9500817 9500901 -192827446 - L1M4 LINE L1 -1416 4730 4643 2200 102 7 0 chr4 9500917 9501221 -192827126 - AluY SINE Alu -5 306 1 1236 164 18 13 chr4 9501354 9501579 -192826768 + AluJb SINE Alu 42 267 -45 1593 217 54 6 chr4 9501579 9502099 -192826248 + L1M4 LINE L1 4813 5357 -789 701 162 0 11 chr4 9502302 9502481 -192825866 + (CGTG)n Simple_repeat Simple_repeat 3 179 0 210 302 21 0 chr4 9502511 9502607 -192825740 + (AGCGG)n Simple_repeat Simple_repeat 2 99 0 229 206 22 0 chr4 9502631 9502723 -192825624 + (AGCGG)n Simple_repeat Simple_repeat 1 94 0 2681 143 59 36 chr4 9503499 9504157 -192824190 + LOR1-int LTR ERV1 793 1465 -6655 1633 153 4 4 chr4 9504158 9504426 -192823921 + AluSx SINE Alu 1 268 -44 576 70 0 0 chr4 9704653 9704739 -192623608 + (TC)n Simple_repeat Simple_repeat 1 86 0 291 28 0 0 chr4 9705937 9705973 -192622374 + (TG)n Simple_repeat Simple_repeat 1 36 0 2065 109 4 0 chr4 9706598 9706873 -192621474 - AluSx SINE Alu -36 276 1 862 235 40 0 chr4 9708651 9708851 -192619496 + MER58A DNA MER1_type 1 208 -16 435 59 176 0 chr4 9710082 9710150 -192618197 + MADE1 DNA Mariner 1 80 0 609 139 10 0 chr4 9710684 9710785 -192617562 - AluSg/x SINE Alu 0 309 208 21410 64 1 1 chr4 9710886 9713491 -192614856 + HERVE LTR ERV1 4439 7042 -771 1968 251 87 33 chr4 9713620 9714341 -192614006 + L2 LINE L2 1622 2381 -933 611 256 77 93 chr4 9714692 9714816 -192613531 - L1MCc LINE L1 -5921 502 377 1775 76 69 65 chr4 9714816 9715093 -192613254 + AluSg SINE Alu 1 278 -32 1122 50 6 12 chr4 9715094 9715254 -192613093 + (GAAA)n Simple_repeat Simple_repeat 2 160 0 611 256 77 93 chr4 9715254 9715619 -192612728 - L1MCc LINE L1 -6045 378 19 355 359 30 6 chr4 9715729 9715896 -192612451 - L1MEc LINE L1 -4658 1738 1568 23 78 0 0 chr4 9716006 9716057 -192612290 + AT_rich Low_complexity Low_complexity 1 51 0 24 0 0 0 chr4 9716286 9716310 -192612037 + AT_rich Low_complexity Low_complexity 1 24 0 2032 122 3 53 chr4 9716320 9716640 -192611707 - AluSg SINE Alu -6 304 1 21 36 0 0 chr4 9718241 9718269 -192610078 + AT_rich Low_complexity Low_complexity 1 28 0 750 206 0 0 chr4 9718490 9718616 -192609731 - FLAM_C SINE Alu -17 126 1 3183 209 25 80 chr4 9718830 9719855 -192608492 + LTR5 LTR ERVK 1 969 0 34105 189 14 15 chr4 9719855 9727279 -192601068 + HERVK LTR ERVK 1 7289 -128 2642 224 21 79 chr4 9727391 9728363 -192599984 + LTR5 LTR ERVK 55 969 0 439 263 96 13 chr4 9728677 9728833 -192599514 + MIR SINE MIR 79 247 -15 309 272 76 0 chr4 9728862 9728954 -192599393 + L2 LINE L2 3162 3260 -12 510 247 34 21 chr4 9729317 9729514 -192598833 + MIR SINE MIR 23 217 -45 2196 125 0 0 chr4 9729538 9729834 -192598513 + AluSq SINE Alu 1 296 -17 3417 130 39 2 chr4 9729921 9730428 -192597919 + MER1A DNA MER1_type 1 526 -1 719 181 36 104 chr4 9730445 9730594 -192597753 + MER3 DNA MER1_type 4 135 -74 2109 128 3 0 chr4 9730594 9730883 -192597464 - AluSx SINE Alu -16 296 7 719 181 36 104 chr4 9730883 9730954 -192597393 + MER3 DNA MER1_type 135 209 0 679 237 95 0 chr4 9731103 9731293 -192597054 - MIR SINE MIR -6 256 49 5580 73 1 1 chr4 9732009 9732709 -192595638 + HERVE LTR ERV1 7113 7812 -1 1637 221 47 44 chr4 9732798 9733206 -192595141 + LTR2 LTR ERV1 41 449 0 4161 79 0 4 chr4 9733206 9733760 -192594587 + HERVH LTR ERV1 3442 3993 -3720 4316 153 1 1 chr4 9733762 9734424 -192593923 + HERVH LTR ERV1 4488 5149 -2564 1367 118 43 0 chr4 9734425 9734636 -192593711 + HERVH LTR ERV1 5600 5819 -1894 2441 98 45 13 chr4 9734636 9735014 -192593333 + HERVH LTR ERV1 7324 7713 0 2479 93 128 5 chr4 9735015 9735413 -192592934 + LTR7 LTR ERV1 2 448 -2 2323 96 3 0 chr4 9735425 9735727 -192592620 - AluSp SINE Alu -8 305 3 563 242 27 32 chr4 9735737 9735923 -192592424 - MLT1D LTR MaLR -320 185 1 219 350 34 17 chr4 9737103 9737220 -192591127 - L2 LINE L2 -15 3298 3180 1866 155 7 36 chr4 9737258 9737567 -192590780 + AluSx SINE Alu 1 300 -12 378 0 0 0 chr4 9737853 9737895 -192590452 + (CAT)n Simple_repeat Simple_repeat 3 44 0 730 160 80 8 chr4 9738005 9738130 -192590217 + THE1B LTR MaLR 196 329 -35 258 207 0 0 chr4 9739126 9739184 -192589163 + GA-rich Low_complexity Low_complexity 2 59 0 4148 289 25 38 chr4 9740089 9741743 -192586604 + L1PBa LINE L1 6 1639 -5224 743 189 10 136 chr4 9741720 9741926 -192586421 + L1PBb LINE L1 14 193 -6011 * 1431 189 0 20 chr4 9741929 9742183 -192586164 + L1M1 LINE L1 554 802 -6763 1117 103 59 49 chr4 9742176 9742379 -192585968 + THE1C-int LTR MaLR 1376 1580 0 * 1604 176 65 49 chr4 9742379 9742748 -192585599 + THE1C LTR MaLR 1 375 0 330 252 0 23 chr4 9743805 9743936 -192584411 + (TTA)n Simple_repeat Simple_repeat 2 129 0 252 120 0 0 chr4 9745593 9745643 -192582704 + (CA)n Simple_repeat Simple_repeat 1 50 0 10632 125 3 6 chr4 9745699 9747851 -192580496 + L1PA8A LINE L1 3700 5847 -284 2071 149 0 3 chr4 9747972 9748280 -192580067 + AluSg SINE Alu 1 307 -3 302 258 50 75 chr4 9748335 9748494 -192579853 - L2 LINE L2 0 3313 3159 982 207 69 0 chr4 9748653 9748870 -192579477 - LTR16A1 LTR ERVL 0 457 226 356 250 176 0 chr4 9749512 9749648 -192578699 - MIR SINE MIR -72 190 31 1375 176 71 15 chr4 9749669 9749936 -192578411 - AluJo SINE Alu -30 282 1 534 123 0 0 chr4 9749946 9750019 -192578328 - Alu SINE Alu -14 297 225 316 319 88 38 chr4 9750216 9750454 -192577893 - MLT1K LTR MaLR -319 269 20 1091 108 0 13 chr4 9750585 9750742 -192577605 + AluSp/q SINE Alu 159 313 0 840 147 0 29 chr4 9750846 9750982 -192577365 + AluJo SINE Alu 2 133 -169 1340 184 157 0 chr4 9750987 9751248 -192577099 + AluSx SINE Alu 1 302 0 614 211 0 0 chr4 9751254 9751363 -192576984 + AluJo SINE Alu 141 249 -63 253 267 47 0 chr4 9751385 9751471 -192576876 - L1MC4 LINE L1 -1339 6703 6614 246 272 0 22 chr4 9751439 9751531 -192576816 + L1MC4 LINE L1 6614 6703 -1339 * 568 269 38 0 chr4 9751585 9751745 -192576602 + MER104 DNA Tc2 11 176 -4 2161 125 0 0 chr4 9752624 9752911 -192575436 + AluSx SINE Alu 1 287 -25 620 62 31 0 chr4 9752911 9753007 -192575340 + (TATAA)n Simple_repeat Simple_repeat 4 102 0 1762 189 0 22 chr4 9753145 9753463 -192574884 + AluJo SINE Alu 1 311 -1 207 322 69 0 chr4 9753532 9753619 -192574728 - MIR SINE MIR -74 188 96 1491 180 0 16 chr4 9753639 9753889 -192574458 + AluJb SINE Alu 1 246 -66 2385 160 48 14 chr4 9753889 9754326 -192574021 + MER66B LTR ERV1 1 452 -34 3976 112 67 71 chr4 9754327 9755720 -192572627 + pTR5 LTR ERV1 41 2438 0 315 172 0 47 chr4 9755745 9755809 -192572538 + AluJb SINE Alu 238 298 -4 2039 166 35 35 chr4 9755942 9756400 -192571947 + L1MB7 LINE L1 5670 6127 -57 1608 163 0 8 chr4 9756409 9756661 -192571686 - AluJb SINE Alu -27 285 36 329 140 18 0 chr4 9756761 9756818 -192571529 - AluS SINE Alu -240 60 3 303 146 0 0 chr4 9756964 9757019 -192571328 + (GGGA)n Simple_repeat Simple_repeat 3 57 0 2160 112 17 10 chr4 9757325 9757621 -192570726 - AluSg SINE Alu -12 298 1 1120 153 14 28 chr4 9757698 9757914 -192570433 + MER73 LTR ERVL 432 644 0 211 284 0 78 chr4 9758400 9758457 -192569890 - MER5B DNA MER1_type -81 97 50 932 150 0 0 chr4 9758457 9758590 -192569757 + FLAM_A SINE Alu 1 133 0 211 284 0 78 chr4 9758590 9758634 -192569713 - MER5B DNA MER1_type -128 50 4 235 191 88 44 chr4 9758648 9758716 -192569631 + MLT1F LTR MaLR 1 71 -471 * 344 216 0 0 chr4 9758713 9758787 -192569560 - MER66B LTR ERV1 -412 74 1 914 123 0 8 chr4 9759148 9759278 -192569069 + FLAM_C SINE Alu 1 129 -4 1877 141 3 49 chr4 9759463 9759642 -192568705 - AluSx SINE Alu -1 311 152 2412 87 0 3 chr4 9759642 9759942 -192568405 - AluY SINE Alu -12 299 1 1877 141 3 49 chr4 9759942 9760088 -192568259 - AluSx SINE Alu -160 152 1 474 241 16 88 chr4 9760814 9760950 -192567397 + MER5B DNA MER1_type 2 138 -51 1950 154 0 3 chr4 9760950 9761248 -192567099 - AluJo SINE Alu -13 299 3 474 241 16 88 chr4 9761248 9761297 -192567050 + MER5B DNA MER1_type 138 189 0 371 280 28 51 chr4 9761315 9761501 -192566846 - MER5A DNA MER1_type -6 172 2 1190 223 113 22 chr4 9761864 9761935 -192566412 + MLT1C LTR MaLR 6 69 -398 2066 151 3 0 chr4 9761935 9762233 -192566114 + AluSx SINE Alu 1 299 -13 1190 223 113 22 chr4 9762233 9762570 -192565777 + MLT1C LTR MaLR 69 451 -16 2285 111 0 0 chr4 9762624 9762921 -192565426 + AluSp SINE Alu 1 297 -16 1927 120 7 57 chr4 9763128 9763486 -192564861 + AluSq SINE Alu 1 343 0 257 182 0 0 chr4 9763669 9763713 -192564634 + AluJo SINE Alu 1 44 -258 3902 126 103 48 chr4 9763758 9764203 -192564144 + LTR1 LTR ERV1 1 505 -280 1797 87 0 4 chr4 9764203 9764432 -192563915 + AluY SINE Alu 16 243 -68 3902 126 103 48 chr4 9764432 9764730 -192563617 + LTR1 LTR ERV1 505 785 0 1508 166 0 66 chr4 9764732 9765021 -192563326 + AluJo SINE Alu 40 309 -3 1916 143 0 26 chr4 9765562 9765869 -192562478 + AluSx SINE Alu 1 299 -13 248 0 31 0 chr4 9765878 9765910 -192562437 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 355 43 0 0 chr4 9766203 9766295 -192562052 + AluSp/q SINE Alu 239 330 0 1768 142 32 11 chr4 9766375 9766656 -192561691 + AluSx SINE Alu 3 289 -23 2102 135 23 0 chr4 9767933 9768237 -192560110 + AluSx SINE Alu 1 311 -1 222 258 93 10 chr4 9768346 9768443 -192559904 + MIR SINE MIR 106 210 -52 248 290 29 22 chr4 9768652 9768790 -192559557 + L1MB3 LINE L1 6038 6176 -7 872 176 11 43 chr4 9773815 9774003 -192554344 - LTR5 LTR ERVK 0 969 788 2800 201 16 48 chr4 9774182 9774848 -192553499 - LTR5 LTR ERVK -324 645 1 244 326 23 6 chr4 9776257 9776429 -192551918 + L1MB3 LINE L1 6009 6183 0 317 230 0 30 chr4 9777335 9777435 -192550912 + (TAA)n Simple_repeat Simple_repeat 3 99 0 534 314 37 8 chr4 9778157 9778402 -192549945 + LTR16A LTR ERVL 199 450 0 2155 143 0 0 chr4 9778943 9779243 -192549104 - AluSc SINE Alu -9 300 1 856 151 0 146 chr4 9779642 9779841 -192548506 - AluSg/x SINE Alu -18 294 125 228 193 4 0 chr4 9780032 9780076 -192548271 - L2 LINE L2 -34 3277 3202 1872 174 3 0 chr4 9780148 9780442 -192547905 - AluSx SINE Alu -17 295 1 406 302 45 26 chr4 9780937 9781205 -192547142 + L1ME2 LINE L1 5706 5978 -186 874 142 43 21 chr4 9781206 9781347 -192547000 + AluSq/x SINE Alu 6 149 -163 1580 157 0 41 chr4 9781351 9781644 -192546703 + L1PA16 LINE L1 5884 6164 -2 3318 212 29 51 chr4 9781644 9781964 -192546383 + L1MA9 LINE L1 5323 5648 -664 326 74 19 0 chr4 9781964 9782018 -192546329 + (TA)n Simple_repeat Simple_repeat 1 55 0 3318 212 29 51 chr4 9782018 9782700 -192545647 + L1MA9 LINE L1 5648 6303 -9 497 311 68 27 chr4 9782755 9782977 -192545370 + MLT1J LTR MaLR 225 455 -56 22 35 0 0 chr4 9783247 9783276 -192545071 + AT_rich Low_complexity Low_complexity 1 29 0 187 224 184 13 chr4 9785450 9785526 -192542821 - L2 LINE L2 -5 3308 3220 234 62 0 0 chr4 9785852 9785884 -192542463 + (TG)n Simple_repeat Simple_repeat 1 32 0 236 287 189 25 chr4 9786213 9786340 -192542007 - MIR3 SINE MIR -67 141 6 25 51 0 0 chr4 9786534 9786573 -192541774 + AT_rich Low_complexity Low_complexity 1 39 0 355 323 31 57 chr4 9786877 9787069 -192541278 + MIR3 SINE MIR 5 191 -17 899 231 57 9 chr4 9787448 9787764 -192540583 + L1MA10 LINE L1 5987 6317 -17 2245 88 3 0 chr4 9788549 9788857 -192539490 + AluSx SINE Alu 1 309 0 2226 119 7 10 chr4 9789474 9789784 -192538563 - AluSx SINE Alu -2 310 2 1476 174 45 77 chr4 9789982 9790292 -192538055 + AluJo SINE Alu 1 300 -12 643 256 96 27 chr4 9790453 9790672 -192537675 + MIR SINE MIR 29 262 0 595 139 0 30 chr4 9790897 9790998 -192537349 - AluS SINE Alu -214 99 2 540 187 27 73 chr4 9791002 9791152 -192537195 - MLT1C LTR MaLR -284 183 41 1516 168 31 58 chr4 9791171 9791462 -192536885 - AluJo SINE Alu -11 301 19 21 36 0 0 chr4 9791673 9791701 -192536646 + AT_rich Low_complexity Low_complexity 1 28 0 2178 111 7 0 chr4 9792136 9792425 -192535922 + AluSc SINE Alu 1 291 -18 2178 106 3 10 chr4 9792519 9792821 -192535526 + AluSx SINE Alu 1 300 -12 313 302 103 9 chr4 9793925 9794041 -192534306 + L2 LINE L2 3184 3310 -3 206 104 42 83 chr4 9796239 9796287 -192532060 - MIR SINE MIR -85 177 132 869 248 65 0 chr4 9796308 9796522 -192531825 + MIR SINE MIR 13 240 -22 810 239 90 44 chr4 9796568 9797014 -192531333 - L2 LINE L2 -50 3263 2777 2174 128 0 0 chr4 9798449 9798746 -192529601 + AluSx SINE Alu 1 297 -15 287 274 212 28 chr4 9799649 9800007 -192528340 + LTR33A LTR ERVL 84 507 -16 2128 136 10 0 chr4 9800020 9800329 -192528018 - AluSx SINE Alu 0 312 1 709 183 32 8 chr4 9800855 9800981 -192527366 - FLAM_A SINE Alu -4 129 1 322 268 74 63 chr4 9801272 9801426 -192526921 + MIR SINE MIR 26 177 -68 2028 107 52 14 chr4 9801503 9801636 -192526711 + AluSx SINE Alu 1 128 -184 2056 157 0 0 chr4 9801636 9801936 -192526411 + AluSq SINE Alu 1 300 -13 2028 107 52 14 chr4 9801936 9802093 -192526254 + AluSx SINE Alu 128 302 -10 520 307 79 0 chr4 9802164 9802379 -192525968 - L1MD2 LINE L1 -365 5994 5763 256 190 6 20 chr4 9804152 9804226 -192524121 + MIR3 SINE MIR 81 154 -54 243 313 137 0 chr4 9804377 9804508 -192523839 - MIR SINE MIR -32 230 82 1993 139 3 19 chr4 9804785 9805101 -192523246 + AluJb SINE Alu 1 311 -1 1487 158 15 11 chr4 9805276 9805549 -192522798 + L1PA8A LINE L1 5858 6131 0 366 80 0 0 chr4 9805551 9805601 -192522746 + (CATA)n Simple_repeat Simple_repeat 4 53 0 384 206 10 21 chr4 9805821 9805918 -192522429 - L1M3 LINE L1 -432 5748 5653 443 300 71 73 chr4 9805918 9806258 -192522089 - L1M3 LINE L1 -766 5380 5042 245 380 8 4 chr4 9806404 9806638 -192521709 - L1M3 LINE L1 -1192 4954 4720 183 188 0 0 chr4 9806718 9806766 -192521581 + (CA)n Simple_repeat Simple_repeat 1 48 0 348 130 0 0 chr4 9809243 9809312 -192519035 + (CA)n Simple_repeat Simple_repeat 1 69 0 336 181 0 0 chr4 9811344 9811427 -192516920 + (CA)n Simple_repeat Simple_repeat 1 83 0 350 114 14 0 chr4 9813989 9814059 -192514288 + (CA)n Simple_repeat Simple_repeat 1 71 0 303 193 0 0 chr4 9816091 9816174 -192512173 + (CA)n Simple_repeat Simple_repeat 1 83 0 330 134 0 0 chr4 9818736 9818803 -192509544 + (CA)n Simple_repeat Simple_repeat 1 67 0 303 193 0 0 chr4 9820835 9820918 -192507429 + (CA)n Simple_repeat Simple_repeat 1 83 0 348 130 0 0 chr4 9823479 9823548 -192504799 + (CA)n Simple_repeat Simple_repeat 1 69 0 303 193 0 0 chr4 9825580 9825663 -192502684 + (CA)n Simple_repeat Simple_repeat 1 83 0 311 132 15 0 chr4 9828224 9828292 -192500055 + (CA)n Simple_repeat Simple_repeat 1 69 0 303 193 0 0 chr4 9830325 9830408 -192497939 + (CA)n Simple_repeat Simple_repeat 1 83 0 281 153 14 0 chr4 9832970 9833042 -192495305 + (CA)n Simple_repeat Simple_repeat 1 73 0 273 198 0 0 chr4 9835073 9835154 -192493193 + (CA)n Simple_repeat Simple_repeat 1 81 0 728 284 5 10 chr4 9887359 9887563 -192440784 + L1M3a LINE L1 66 268 -5687 5630 235 17 6 chr4 9887601 9889009 -192439338 - L1P LINE L1 -3253 2893 1470 872 183 34 13 chr4 9889109 9889344 -192439003 + L1MA7 LINE L1 6042 6281 -10 1293 265 6 3 chr4 9889369 9889701 -192438646 + L1MB7 LINE L1 5319 5651 -527 522 230 8 0 chr4 9889714 9889840 -192438507 + L1MB7 LINE L1 5763 5889 -295 706 167 109 23 chr4 9889872 9890046 -192438301 + MLT1F1 LTR MaLR 379 567 0 1618 93 0 22 chr4 9890156 9890381 -192437966 + AluY SINE Alu 35 254 -57 1882 127 65 9 chr4 9890558 9890880 -192437467 - L1MB1 LINE L1 -1 6167 5828 208 409 55 0 chr4 9890978 9891105 -192437242 + MIR3 SINE MIR 11 144 -64 5425 198 30 11 chr4 9891343 9892787 -192435560 + L1P4 LINE L1 4065 5529 -637 2934 120 9 2 chr4 9892887 9893354 -192434993 - L1P LINE L1 -3362 2784 2315 1099 127 18 0 chr4 9893354 9893520 -192434827 - AluSp SINE Alu -144 169 1 1916 218 65 28 chr4 9893603 9894180 -192434167 - L1MA9 LINE L1 -44 6268 5668 227 309 12 0 chr4 9894248 9894329 -192434018 - L1M4c LINE L1 -4585 1799 1718 1781 215 31 0 chr4 9894391 9894716 -192433631 + Tigger7 DNA MER2_type 7 341 -392 25 31 0 0 chr4 9894723 9894755 -192433592 + AT_rich Low_complexity Low_complexity 1 32 0 616 228 49 0 chr4 9894760 9894883 -192433464 + Tigger7 DNA MER2_type 2362 2490 -1 358 228 0 0 chr4 9894888 9894967 -192433380 - L1M4c LINE L1 -4885 1499 1421 3359 154 16 2 chr4 9895072 9895807 -192432540 - L1MA7 LINE L1 -444 5847 5099 3028 180 25 15 chr4 9895851 9896074 -192432273 + L1PA13 LINE L1 1408 1627 -5160 1643 143 110 24 chr4 9896074 9896409 -192431938 + THE1B LTR MaLR 1 364 0 3028 180 25 15 chr4 9896409 9896785 -192431562 + L1PA13 LINE L1 1627 2013 -4774 2348 83 3 3 chr4 9896784 9897096 -192431251 + L1PA5 LINE L1 5685 5996 -158 * 393 314 87 5 chr4 9897196 9897381 -192430966 + MLT1J LTR MaLR 260 459 -52 194 284 45 45 chr4 9897697 9897785 -192430562 + MER5B DNA MER1_type 87 174 -4 213 270 31 119 chr4 9897790 9897949 -192430398 - MIR3 SINE MIR -48 160 16 282 95 0 0 chr4 9898952 9898994 -192429353 + (TCTA)n Simple_repeat Simple_repeat 4 45 0 2565 50 0 0 chr4 9901236 9901533 -192426814 - AluY SINE Alu -9 302 6 444 62 62 0 chr4 9901643 9901708 -192426639 - MER41A LTR ERV1 -88 466 398 473 213 0 46 chr4 9901832 9901940 -192426407 - MER20 DNA MER1_type -4 215 113 216 97 0 0 chr4 9901966 9901997 -192426350 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 689 301 52 43 chr4 9902527 9903089 -192425258 - L1M4 LINE L1 -2828 3816 3250 1090 335 53 60 chr4 9903092 9903616 -192424731 - L2 LINE L2 -256 3057 2542 1783 159 3 32 chr4 9903616 9903930 -192424417 + AluSq SINE Alu 1 305 -8 1090 335 53 60 chr4 9903930 9904225 -192424122 - L2 LINE L2 -771 2542 2246 307 242 23 62 chr4 9904685 9904813 -192423534 + L1ME4a LINE L1 5744 5866 -255 2011 146 7 0 chr4 9905336 9905645 -192422702 + AluSx SINE Alu 1 311 -1 2572 240 141 17 chr4 9906092 9907020 -192421327 - L1M4 LINE L1 -5498 1044 2 687 248 15 84 chr4 9907215 9907485 -192420862 + MLT1G1 LTR MaLR 2 210 -357 4928 187 25 32 chr4 9907492 9909309 -192419038 + L1PA15 LINE L1 4124 5916 -249 1931 116 0 0 chr4 9909309 9909567 -192418780 + AluY SINE Alu 39 296 -15 4928 187 25 32 chr4 9909567 9909816 -192418531 + L1PA15 LINE L1 5916 6165 0 634 231 54 16 chr4 9909877 9910063 -192418284 - L1M4 LINE L1 -1297 4849 4657 2433 64 0 26 chr4 9910613 9910926 -192417421 + AluY SINE Alu 1 305 -6 228 35 0 0 chr4 9910973 9911002 -192417345 + (A)n Simple_repeat Simple_repeat 1 29 0 193 300 0 0 chr4 9911771 9911821 -192416526 - MIR SINE MIR -67 141 92 21 57 0 0 chr4 9912079 9912114 -192416233 + AT_rich Low_complexity Low_complexity 1 35 0 212 324 20 29 chr4 9912477 9912579 -192415768 + MIR SINE MIR 45 145 -63 3012 180 25 4 chr4 9912807 9913367 -192414980 - L1PA16 LINE L1 -9 6157 5586 220 328 41 49 chr4 9913498 9913620 -192414727 - L2 LINE L2 -2 3270 3150 406 235 110 133 chr4 9914498 9914650 -192413697 - Charlie8 DNA MER1_type -1911 506 352 234 0 0 0 chr4 9914650 9914676 -192413671 + (TG)n Simple_repeat Simple_repeat 2 27 0 406 235 110 133 chr4 9914676 9914952 -192413395 - Charlie8 DNA MER1_type -2065 352 88 291 28 0 0 chr4 9914965 9915001 -192413346 + (CA)n Simple_repeat Simple_repeat 1 36 0 204 182 0 0 chr4 9915308 9915352 -192412995 + CT-rich Low_complexity Low_complexity 1 44 0 2047 142 0 3 chr4 9915443 9915745 -192412602 + AluSg SINE Alu 1 301 -9 1451 211 57 72 chr4 9916215 9916728 -192411619 - MLT1D LTR MaLR 0 505 1 5116 258 47 66 chr4 9917229 9918538 -192409809 + L1MB7 LINE L1 6 1272 -5577 2301 82 3 33 chr4 9918538 9918843 -192409504 + AluSp SINE Alu 13 308 -5 5116 258 47 66 chr4 9918843 9919340 -192409007 + L1MB7 LINE L1 1272 1777 -5072 498 187 0 9 chr4 9919343 9919450 -192408897 + L1MB7 LINE L1 1917 2022 -4827 2008 170 26 1 chr4 9919466 9919876 -192408471 + L1MB7 LINE L1 5700 6115 -755 * 2346 335 68 15 chr4 9919875 9920863 -192407484 + L1PBa LINE L1 6 1045 -5818 3215 164 88 87 chr4 9920878 9921868 -192406479 - LTR12 LTR ERV1 -134 1481 3 294 263 0 0 chr4 9921872 9921948 -192406399 + L1PBa LINE L1 1088 1163 -5700 2269 205 78 23 chr4 9921969 9922570 -192405777 + L1MB7 LINE L1 6253 6886 0 1530 174 39 48 chr4 9923075 9923386 -192404961 + AluJb SINE Alu 1 308 -4 26 0 0 0 chr4 9923908 9923934 -192404413 + AT_rich Low_complexity Low_complexity 1 26 0 1521 193 109 3 chr4 9923969 9924324 -192404023 - L1MB7 LINE L1 -1 6168 5785 308 222 51 0 chr4 9924313 9924400 -192403947 + L1MB7 LINE L1 6085 6175 -3 * 4086 230 16 9 chr4 9924655 9925687 -192402660 - L1 LINE L1 -2775 3371 2333 1604 221 19 55 chr4 9925688 9926102 -192402245 - MLT1B LTR MaLR 0 426 2 1899 202 59 51 chr4 9926102 9926641 -192401706 + L1MCa LINE L1 1086 1734 -4692 1577 130 107 4 chr4 9926641 9926903 -192401444 - AluSx SINE Alu -23 289 1 1899 202 59 51 chr4 9926903 9927007 -192401340 + L1MCa LINE L1 1734 1836 -4590 4825 208 16 10 chr4 9927009 9928064 -192400283 + L1 LINE L1 4031 5091 -1055 559 304 146 14 chr4 9928228 9928653 -192399694 + L2 LINE L2 1351 1831 -1483 1431 219 121 38 chr4 9929176 9929974 -192398373 - SATR1 Satellite Satellite -5 864 1 275 178 8 59 chr4 9930152 9930270 -192398077 + (TTA)n Simple_repeat Simple_repeat 1 112 0 27943 107 13 11 chr4 9930325 9934374 -192393973 + HERVE LTR ERV1 1110 5165 -2648 2049 198 103 11 chr4 9934374 9936457 -192391890 - SATR1 Satellite Satellite 0 2274 1 851 225 283 6 chr4 9936487 9936816 -192391531 - SATR1 Satellite Satellite -3 467 48 1386 117 27 31 chr4 9936820 9937043 -192391304 - AluSq SINE Alu -91 222 1 738 223 46 0 chr4 9938935 9939132 -192389215 + MER6B DNA MER2_type 5 210 0 340 207 37 0 chr4 9939237 9939319 -192389028 - MER5B DNA MER1_type -6 172 88 1924 146 0 46 chr4 9939530 9939858 -192388489 - AluSp SINE Alu 0 313 1 1254 223 3 73 chr4 9940044 9940227 -192388120 + L1MA4 LINE L1 5767 5910 -390 1679 164 0 4 chr4 9940227 9940508 -192387839 + AluSx SINE Alu 1 280 -32 1254 223 3 73 chr4 9940508 9940709 -192387638 + L1MA4 LINE L1 5910 6124 -176 2291 96 3 3 chr4 9940795 9941108 -192387239 - AluSp SINE Alu 0 313 1 1862 257 30 9 chr4 9941151 9942147 -192386200 + L1MB3 LINE L1 4814 5831 -352 1828 147 3 20 chr4 9942147 9942447 -192385900 + AluSx SINE Alu 1 295 -17 1738 219 100 23 chr4 9942564 9943363 -192384984 - SATR1 Satellite Satellite -20 860 1 226 205 17 43 chr4 9943422 9943539 -192384808 + (TTA)n Simple_repeat Simple_repeat 1 114 0 311 261 13 26 chr4 9943569 9943722 -192384625 + (TTA)n Simple_repeat Simple_repeat 1 151 0 2105 203 117 9 chr4 9943731 9945844 -192382503 - SATR1 Satellite Satellite -1 2342 1 26415 107 12 13 chr4 9946198 9950040 -192378307 + HERVE LTR ERV1 1108 4945 -2868 1882 185 104 31 chr4 9950046 9950819 -192377528 - SATR1 Satellite Satellite 0 828 1 790 234 280 3 chr4 9950849 9951178 -192377169 - SATR1 Satellite Satellite -3 467 48 1387 128 27 14 chr4 9951182 9951401 -192376946 - AluSq SINE Alu -91 222 1 678 234 46 0 chr4 9953292 9953489 -192374858 + MER6B DNA MER2_type 5 210 0 303 246 97 9 chr4 9953592 9953706 -192374641 - MER5B DNA MER1_type -5 173 50 2015 130 0 40 chr4 9953890 9954214 -192374133 - AluSp SINE Alu -2 311 1 287 322 70 0 chr4 9954219 9954362 -192373985 - HsTC2 DNA Tc2 -113 1785 1633 1231 233 3 72 chr4 9954400 9954583 -192373764 + L1MA4 LINE L1 5767 5910 -390 1627 178 0 4 chr4 9954583 9954864 -192373483 + AluSx SINE Alu 1 280 -32 1231 233 3 72 chr4 9954864 9955071 -192373276 + L1MA4 LINE L1 5910 6130 -170 2126 105 16 3 chr4 9955150 9955454 -192372893 - AluSp SINE Alu -5 308 1 1878 243 25 0 chr4 9955499 9956493 -192371854 + L1MA7 LINE L1 4818 5781 -402 1899 140 3 20 chr4 9956493 9956793 -192371554 + AluSx SINE Alu 1 295 -17 1878 243 25 0 chr4 9956793 9956931 -192371416 + L1MA7 LINE L1 5781 5913 -270 1947 123 35 3 chr4 9956931 9957216 -192371131 + AluSx SINE Alu 2 295 -17 1878 243 25 0 chr4 9957216 9957468 -192370879 + L1MA7 LINE L1 5913 6153 -30 29 0 0 0 chr4 9957488 9957517 -192370830 + AT_rich Low_complexity Low_complexity 1 29 0 3197 213 15 74 chr4 9957979 9959009 -192369338 + LTR5 LTR ERVK 1 969 0 369 346 47 14 chr4 9959334 9959548 -192368799 - MIR SINE MIR -10 252 32 2078 118 0 43 chr4 9959942 9960265 -192368082 + AluSg SINE Alu 1 309 -1 364 202 20 10 chr4 9961389 9961488 -192366859 + L1M4 LINE L1 4623 4722 -1424 297 0 0 0 chr4 9961495 9961528 -192366819 + (TA)n Simple_repeat Simple_repeat 1 33 0 338 284 79 22 chr4 9961530 9961759 -192366588 - L1M4 LINE L1 -3189 2957 2716 430 238 163 44 chr4 9961911 9962293 -192366054 - MLT1J2 LTR MaLR -2 448 1 310 331 31 8 chr4 9962301 9962431 -192365916 - L1M4 LINE L1 -3594 2552 2420 216 315 112 11 chr4 9962507 9962596 -192365751 - MIR3 SINE MIR -54 154 57 4783 124 308 91 chr4 9962707 9964100 -192364247 - pTR5 LTR ERV1 0 2438 743 407 295 248 15 chr4 9965390 9966016 -192362331 + L2 LINE L2 2243 3028 -244 2131 141 7 7 chr4 9966077 9966383 -192361964 - AluSq SINE Alu -7 306 1 311 271 14 17 chr4 9966698 9966800 -192361547 - MER5A DNA MER1_type 0 189 79 * 442 288 169 0 chr4 9966792 9966952 -192361395 + L2 LINE L2 2519 2705 -609 1385 181 36 12 chr4 9966953 9967202 -192361145 - AluJo SINE Alu -16 296 42 378 108 0 0 chr4 9967271 9967336 -192361011 + (TC)n Simple_repeat Simple_repeat 2 66 0 2521 70 3 0 chr4 9967982 9968283 -192360064 + AluY SINE Alu 1 302 -9 2126 136 3 3 chr4 9968519 9968828 -192359519 - AluSc SINE Alu 0 309 1 202 333 17 0 chr4 9969090 9969150 -192359197 + MIR SINE MIR 15 75 -187 2629 239 34 8 chr4 9969155 9969771 -192358576 - ERVL LTR ERVL -3615 2149 1518 466 268 16 0 chr4 9969787 9969910 -192358437 + MIR SINE MIR 99 223 -39 212 319 88 0 chr4 9970000 9970113 -192358234 - L2 LINE L2 -13 3300 3178 328 296 104 70 chr4 9970589 9971032 -192357315 + L2 LINE L2 2804 3261 -11 608 294 16 36 chr4 9973147 9973395 -192354952 + MIR SINE MIR 8 250 -12 1713 175 7 7 chr4 9973478 9973770 -192354577 + AluJb SINE Alu 1 292 -20 637 204 39 100 chr4 9975077 9975308 -192353039 - MER20 DNA MER1_type -2 217 1 383 315 54 22 chr4 9975337 9975521 -192352826 + MIR SINE MIR 41 230 -32 2167 134 3 0 chr4 9975524 9975830 -192352517 - AluSx SINE Alu -5 307 1 242 365 69 0 chr4 9976935 9977138 -192351209 - L2 LINE L2 -943 2371 2155 1471 124 45 0 chr4 9977166 9977368 -192350979 - AluSx SINE Alu -96 216 6 25 31 0 0 chr4 9977378 9977410 -192350937 + AT_rich Low_complexity Low_complexity 1 32 0 219 164 55 0 chr4 9977544 9977599 -192350748 + A-rich Low_complexity Low_complexity 2 59 0 1214 225 23 43 chr4 9977599 9977695 -192350652 + L1MB3 LINE L1 5814 5910 -273 1858 141 35 0 chr4 9977695 9977978 -192350369 + AluSx SINE Alu 3 295 -17 1214 225 23 43 chr4 9977978 9978228 -192350119 + L1MB3 LINE L1 5910 6153 -30 31 0 0 0 chr4 9978248 9978279 -192350068 + AT_rich Low_complexity Low_complexity 1 31 0 3678 206 17 59 chr4 9978737 9979749 -192348598 + LTR5 LTR ERVK 1 969 0 290 379 47 14 chr4 9980075 9980289 -192348058 - MIR SINE MIR -10 252 32 2114 128 0 6 chr4 9980683 9980995 -192347352 + AluSg SINE Alu 1 310 0 224 259 59 52 chr4 9981360 9981495 -192346852 + L2 LINE L2 3137 3272 0 2154 122 0 3 chr4 9981553 9981857 -192346490 - AluY SINE Alu -8 303 1 204 40 0 0 chr4 9983007 9983032 -192345315 + (T)n Simple_repeat Simple_repeat 1 25 0 1003 233 213 44 chr4 9983594 9985003 -192343344 - SATR1 Satellite Satellite -1 1646 1 913 249 255 27 chr4 9985040 9986443 -192341904 - SATR1 Satellite Satellite -94 1722 1 568 241 95 75 chr4 9986546 9986974 -192341373 - SATR1 Satellite Satellite -24 436 1 22 0 0 0 chr4 9987223 9987245 -192341102 + GC_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr4 9987307 9987330 -192341017 + GC_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr4 9988492 9988515 -192339832 + GC_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr4 9988577 9988600 -192339747 + GC_rich Low_complexity Low_complexity 1 23 0 1234 258 106 23 chr4 9988711 9989492 -192338855 - SATR1 Satellite Satellite -3 845 1 21 36 0 0 chr4 9989538 9989566 -192338781 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr4 9989584 9989610 -192338737 + AT_rich Low_complexity Low_complexity 1 26 0 208 229 7 57 chr4 9989675 9989815 -192338532 + (TTA)n Simple_repeat Simple_repeat 1 133 0 27254 106 12 11 chr4 9989843 9993898 -192334449 + HERVE LTR ERV1 1108 5165 -2648 1897 186 115 34 chr4 9993898 9996414 -192331933 - SATR1 Satellite Satellite -144 2718 1 1384 121 27 31 chr4 9996418 9996641 -192331706 - AluSq SINE Alu -91 222 1 625 223 51 5 chr4 9998533 9998730 -192329617 + MER6B DNA MER2_type 5 210 0 421 200 73 80 chr4 9998833 9998983 -192329364 - MER5B DNA MER1_type -5 173 25 2090 128 0 46 chr4 9999126 9999454 -192328893 - AluSp SINE Alu 0 313 1 249 315 70 0 chr4 9999459 9999602 -192328745 - HsTC2 DNA Tc2 -113 1785 1633 1242 246 2 60 chr4 9999640 9999823 -192328524 + L1MA4 LINE L1 5767 5959 -341 1654 183 0 3 chr4 9999823 10000107 -192328240 + AluSx SINE Alu 1 283 -29 1242 246 2 60 chr4 10000107 10000341 -192328006 + L1MA4 LINE L1 5959 6160 -140 2083 128 3 3 chr4 10000391 10000695 -192327652 - AluSp SINE Alu -9 304 1 2804 238 23 51 chr4 10000738 10001734 -192326613 + L1MB3 LINE L1 4814 5837 -346 1833 151 3 28 chr4 10001734 10002053 -192326294 + AluSx SINE Alu 1 311 -1 2804 238 23 51 chr4 10002053 10002181 -192326166 + L1MB3 LINE L1 5837 5967 -216 1760 149 40 0 chr4 10002181 10002456 -192325891 + AluSx SINE Alu 10 295 -17 2804 238 23 51 chr4 10002456 10002708 -192325639 + L1MB3 LINE L1 5967 6153 -30 24 32 0 0 chr4 10002728 10002759 -192325588 + AT_rich Low_complexity Low_complexity 1 31 0 3110 229 17 62 chr4 10003216 10004231 -192324116 + LTR5 LTR ERVK 1 969 0 1763 209 107 37 chr4 10004501 10005663 -192322684 - SATR1 Satellite Satellite -20 1243 1 372 250 12 29 chr4 10005785 10005957 -192322390 + (TTA)n Simple_repeat Simple_repeat 1 169 0 35 24 0 0 chr4 10006009 10006051 -192322296 + AT_rich Low_complexity Low_complexity 1 42 0 1973 221 103 12 chr4 10006051 10007127 -192321220 - SATR1 Satellite Satellite -52 1174 1 1847 114 33 13 chr4 10009854 10010153 -192318194 + AluSq SINE Alu 1 305 -8 1940 139 0 13 chr4 10010177 10010493 -192317854 + AluSx SINE Alu 1 312 0 1572 130 32 0 chr4 10010503 10010750 -192317597 + AluJo SINE Alu 1 255 -57 248 303 15 0 chr4 10010835 10010901 -192317446 - MER112 DNA MER1_type -175 85 19 2282 102 0 6 chr4 10014068 10014383 -192313964 - AluSq SINE Alu 0 313 1 629 237 28 90 chr4 10014450 10014540 -192313807 + L1MEd LINE L1 23 117 -6002 2045 108 11 0 chr4 10014540 10014826 -192313521 + AluSq SINE Alu 1 289 -24 243 0 0 0 chr4 10014831 10014858 -192313489 + (TAAAA)n Simple_repeat Simple_repeat 3 29 0 629 237 28 90 chr4 10014858 10014972 -192313375 + L1MEd LINE L1 121 220 -5899 1107 267 58 47 chr4 10015033 10015270 -192313077 + L1MEd LINE L1 329 575 -5544 2003 111 17 3 chr4 10015270 10015559 -192312788 + AluSq SINE Alu 1 293 -20 1107 267 58 47 chr4 10015559 10015766 -192312581 + L1MEd LINE L1 575 778 -5341 382 285 0 24 chr4 10015813 10015936 -192312411 + MLT1E LTR MaLR 1 120 -473 508 28 14 14 chr4 10015938 10016009 -192312338 + (TTTTA)n Simple_repeat Simple_repeat 3 73 0 585 259 0 0 chr4 10016009 10016125 -192312222 - FLAM_C SINE Alu -26 117 2 2163 83 21 0 chr4 10016135 10016424 -192311923 - AluSx SINE Alu -17 295 1 276 235 128 5 chr4 10016432 10016591 -192311756 + MLT1E3 LTR MaLR 12 262 -392 303 218 110 0 chr4 10016644 10016737 -192311610 + MLT1E3 LTR MaLR 290 397 -227 363 216 117 47 chr4 10016741 10016912 -192311435 - SATR1 Satellite Satellite -131 339 157 1854 138 7 13 chr4 10017201 10017505 -192310842 + AluSx SINE Alu 3 304 -8 25 0 0 0 chr4 10017515 10017540 -192310807 + AT_rich Low_complexity Low_complexity 1 25 0 2578 121 54 64 chr4 10017575 10017917 -192310430 - L1MA8 LINE L1 -3 6288 5951 1793 161 10 3 chr4 10017917 10018227 -192310120 - AluJo SINE Alu 0 312 1 2578 121 54 64 chr4 10018227 10018403 -192309944 - L1MA8 LINE L1 -340 5951 5775 1073 202 14 23 chr4 10018792 10019010 -192309337 + MER58A DNA MER1_type 9 224 0 2026 137 13 0 chr4 10019952 10020258 -192308089 + AluSx SINE Alu 1 310 -2 344 273 65 65 chr4 10020440 10020594 -192307753 + MIR SINE MIR 101 254 -8 659 203 6 55 chr4 10021132 10021314 -192307033 - MER53 DNA DNA -3 186 14 2126 111 13 7 chr4 10022025 10022332 -192306015 - AluSq SINE Alu -4 309 1 267 200 67 32 chr4 10022675 10022796 -192305551 + L2 LINE L2 2921 3047 -266 338 288 136 0 chr4 10023026 10023151 -192305196 - MIR SINE MIR -115 147 6 1341 146 36 0 chr4 10024454 10024673 -192303674 + AluSg SINE Alu 1 227 -83 446 178 10 30 chr4 10024752 10024853 -192303494 + AluSg SINE Alu 207 305 -4 2183 67 14 0 chr4 10024941 10025224 -192303123 - L1PA8 LINE L1 0 6172 5886 262 378 27 5 chr4 10025404 10025589 -192302758 - L1MC/D LINE L1 -2009 5799 5611 573 237 0 0 chr4 10025832 10026069 -192302278 + (TCCA)n Simple_repeat Simple_repeat 1 237 0 198 312 0 65 chr4 10026083 10026160 -192302187 - L2 LINE L2 -1 3312 3241 * 551 261 92 11 chr4 10026142 10026326 -192302021 + MIR SINE MIR 12 210 -52 181 368 43 17 chr4 10026451 10026568 -192301779 - L2 LINE L2 -163 3109 2990 1886 141 3 0 chr4 10026995 10027286 -192301061 + AluSx SINE Alu 11 302 -10 248 261 167 3 chr4 10027643 10027754 -192300593 + MIR3 SINE MIR 32 159 -49 215 176 20 59 chr4 10027857 10027908 -192300439 + MER5A DNA MER1_type 119 167 -22 187 114 86 0 chr4 10027877 10027912 -192300435 - MER5B DNA MER1_type -124 54 17 * 1627 162 22 11 chr4 10028202 10028504 -192299843 - AluJb SINE Alu 0 305 1 360 235 125 61 chr4 10028506 10028881 -192299466 - L1MC5 LINE L1 -28 7933 7535 1962 119 14 7 chr4 10028950 10029243 -192299104 + AluSc SINE Alu 1 295 -14 359 241 63 57 chr4 10029538 10029696 -192298651 - MER5B DNA MER1_type -3 175 17 187 366 14 0 chr4 10029784 10029855 -192298492 + L2 LINE L2 3106 3177 -95 1941 131 3 17 chr4 10030243 10030541 -192297806 + AluSx SINE Alu 1 294 -18 1727 136 4 4 chr4 10031132 10031396 -192296951 + AluSx SINE Alu 1 264 -48 786 195 168 27 chr4 10031468 10031802 -192296545 - HAL1b LINE L1 -28 1320 940 946 269 117 11 chr4 10032305 10032759 -192295588 - HAL1b LINE L1 -415 933 432 2211 92 0 16 chr4 10032766 10033081 -192295266 - AluY SINE Alu -1 310 1 241 293 49 0 chr4 10033353 10033435 -192294912 - L2 LINE L2 -220 3052 2967 1214 194 24 81 chr4 10033452 10033909 -192294438 + MLT2B1 LTR ERVL 5 414 0 565 89 0 0 chr4 10034486 10034565 -192293782 + MADE1 DNA Mariner 2 80 0 656 360 13 10 chr4 10035912 10036215 -192292132 + MLT1I LTR MaLR 103 406 -3 317 61 0 20 chr4 10036229 10036278 -192292069 + (TG)n Simple_repeat Simple_repeat 1 48 0 21 0 0 0 chr4 10036347 10036368 -192291979 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr4 10037297 10037317 -192291030 + (A)n Simple_repeat Simple_repeat 1 20 0 318 243 111 86 chr4 10037386 10037441 -192290906 + L1ME3A LINE L1 5874 5926 -244 751 234 18 31 chr4 10037441 10037663 -192290684 - MER20 DNA MER1_type 0 219 1 318 243 111 86 chr4 10037663 10037809 -192290538 + L1ME3A LINE L1 5926 6086 -84 1643 150 0 39 chr4 10037809 10038141 -192290206 - AluJb SINE Alu 0 312 1 318 243 111 86 chr4 10038141 10038218 -192290129 + L1ME3A LINE L1 6086 6160 -10 2006 139 7 0 chr4 10038577 10038872 -192289475 - AluSx SINE Alu -15 297 1 1055 147 0 0 chr4 10039013 10039176 -192289171 + AluSg/x SINE Alu 128 290 -20 1697 176 9 11 chr4 10039830 10039993 -192288354 - L1M4 LINE L1 -521 5653 5494 2064 116 0 7 chr4 10039993 10040295 -192288052 - AluSx SINE Alu -12 300 1 1697 176 9 11 chr4 10040295 10040459 -192287888 - L1M4 LINE L1 -680 5494 5331 944 274 133 33 chr4 10040459 10040879 -192287468 + L1ME1 LINE L1 5652 6113 -53 833 169 0 0 chr4 10040952 10041088 -192287259 + FLAM_C SINE Alu 2 137 -6 1048 93 0 0 chr4 10041092 10041231 -192287116 + AluSx SINE Alu 1 139 -174 1179 125 16 0 chr4 10042100 10042284 -192286063 + AluSx SINE Alu 121 307 -5 837 151 0 20 chr4 10042290 10042436 -192285911 + FRAM SINE Alu 4 146 -30 387 127 0 0 chr4 10042440 10042503 -192285844 + (CA)n Simple_repeat Simple_repeat 2 64 0 187 314 0 0 chr4 10042504 10042555 -192285792 - MER5A DNA MER1_type -53 136 86 263 227 174 38 chr4 10042681 10042813 -192285534 - MIR SINE MIR -20 242 93 2679 152 13 20 chr4 10042813 10043261 -192285086 - L1MA7 LINE L1 -232 6059 5615 997 167 88 0 chr4 10043256 10043472 -192284875 + L1MA7 LINE L1 6051 6285 -6 * 210 247 34 79 chr4 10043490 10043579 -192284768 - MIR SINE MIR -156 106 22 269 226 19 142 chr4 10044416 10044522 -192283825 - L2 LINE L2 -7 3265 3173 2910 206 21 77 chr4 10045396 10046422 -192281925 - LTR5 LTR ERVK 0 969 1 1098 185 0 0 chr4 10046424 10046602 -192281745 - HERVK LTR ERVK -2 7241 7064 379 273 13 26 chr4 10046687 10046841 -192281506 + CT-rich Low_complexity Low_complexity 1 152 0 2600 102 11 0 chr4 10046943 10047307 -192281040 - HERVK LTR ERVK -1720 5523 5156 1020 132 29 0 chr4 10047709 10047883 -192280464 - L1MA4 LINE L1 -12 6288 6110 5399 168 35 2 chr4 10047891 10049042 -192279305 + L1PB1 LINE L1 4295 5523 -628 2142 116 0 0 chr4 10049042 10049352 -192278995 + AluSg SINE Alu 1 310 0 5399 168 35 2 chr4 10049352 10050003 -192278344 + L1PB1 LINE L1 5523 6151 0 777 164 120 4 chr4 10050006 10050227 -192278120 - L1MA4 LINE L1 -172 6132 5880 3648 133 14 0 chr4 10050274 10050859 -192277488 - L1MA4A LINE L1 -376 5927 5335 1230 180 4 4 chr4 10050848 10051093 -192277254 - L1P LINE L1 -942 5204 4960 * 9882 212 24 41 chr4 10051094 10051541 -192276806 - L1 LINE L1 -940 5908 5455 243 0 0 0 chr4 10051541 10051568 -192276779 + (TA)n Simple_repeat Simple_repeat 2 28 0 1877 117 0 51 chr4 10051568 10051884 -192276463 - AluY SINE Alu -11 300 1 9882 212 24 41 chr4 10051884 10052368 -192275979 - L1 LINE L1 -1392 5456 4965 431 95 0 40 chr4 10052368 10052442 -192275905 - AluSq SINE Alu -1 311 241 1123 127 30 0 chr4 10052443 10052608 -192275739 - AluSq SINE Alu -143 170 1 9882 212 24 41 chr4 10052608 10054800 -192273547 - L1 LINE L1 -1883 4965 2737 2100 139 51 20 chr4 10054800 10055153 -192273194 + THE1B LTR MaLR 1 364 0 11037 111 16 11 chr4 10055153 10056725 -192271622 + THE1B-int LTR MaLR 1 1580 0 2150 128 48 31 chr4 10056725 10057083 -192271264 + THE1B LTR MaLR 1 364 0 9882 212 24 41 chr4 10057083 10057333 -192271014 - L1 LINE L1 -4108 2740 2521 183 42 0 0 chr4 10057334 10057358 -192270989 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 834 189 0 0 chr4 10057361 10057504 -192270843 - FRAM SINE Alu -33 143 1 5888 214 63 16 chr4 10057504 10058555 -192269792 - L1 LINE L1 -4327 2522 1196 1954 126 4 0 chr4 10058555 10058864 -192269483 - AluSg SINE Alu 0 310 1 5888 214 63 16 chr4 10058864 10059276 -192269071 - L1 LINE L1 -5653 1196 805 847 275 14 5 chr4 10059493 10059711 -192268636 - MER58A DNA MER1_type -1 223 4 1344 218 7 4 chr4 10059825 10060100 -192268247 + AluJo SINE Alu 1 276 -36 438 167 39 98 chr4 10060302 10060404 -192267943 - MLT1H LTR MaLR 0 549 454 * 726 257 112 51 chr4 10060402 10060733 -192267614 - MLT1H LTR MaLR -198 351 1 207 139 0 0 chr4 10061430 10061466 -192266881 + (T)n Simple_repeat Simple_repeat 1 36 0 1909 123 10 7 chr4 10061667 10061968 -192266379 + AluSc SINE Alu 1 302 -7 645 248 39 9 chr4 10062237 10062467 -192265880 + Charlie5 DNA MER1_type 2334 2570 -42 1939 179 43 0 chr4 10062636 10063005 -192265342 + L1MB7 LINE L1 5575 5959 -219 1119 104 75 0 chr4 10063005 10063178 -192265169 + AluSg/x SINE Alu 102 287 -23 975 206 34 0 chr4 10063181 10063385 -192264962 + L1MB7 LINE L1 5974 6184 0 404 302 43 71 chr4 10063385 10063537 -192264810 - L2 LINE L2 -221 3051 2907 1950 141 0 0 chr4 10063537 10063835 -192264512 - AluSq SINE Alu -15 298 1 404 302 43 71 chr4 10063835 10063937 -192264410 - L2 LINE L2 -365 2907 2804 208 300 0 0 chr4 10063978 10064038 -192264309 + MIR SINE MIR 89 148 -60 2211 59 16 7 chr4 10064093 10064396 -192263951 - AluY SINE Alu -5 306 1 549 281 55 33 chr4 10064436 10064710 -192263637 - L2 LINE L2 -577 2737 2458 2035 123 0 3 chr4 10065467 10065768 -192262579 - AluSc SINE Alu -9 300 1 1356 148 19 5 chr4 10065886 10066102 -192262245 + AluSx SINE Alu 2 220 -92 373 211 39 29 chr4 10066359 10066463 -192261884 - L1M4 LINE L1 -391 5793 5689 * 1158 194 25 60 chr4 10066438 10066721 -192261626 + L1MB5 LINE L1 5902 6174 0 1937 150 0 0 chr4 10066725 10067025 -192261322 + AluSx SINE Alu 2 301 -11 618 198 8 24 chr4 10067040 10067166 -192261181 - MER5B DNA MER1_type -50 128 5 264 324 22 55 chr4 10067253 10067435 -192260912 + MER5A DNA MER1_type 3 178 -11 2068 122 16 0 chr4 10067528 10067832 -192260515 + AluSx SINE Alu 1 309 -3 1962 201 128 11 chr4 10068119 10068571 -192259776 - MLT1E LTR MaLR 0 593 89 7889 45 0 0 chr4 10068571 10069543 -192258804 - L1P LINE L1 -896 5250 4279 629 163 16 16 chr4 10069571 10069694 -192258653 + LTR2B LTR ERV1 272 394 -96 1109 112 0 25 chr4 10069699 10069860 -192258487 - AluSc SINE Alu -152 157 1 1567 207 207 51 chr4 10070005 10070571 -192257776 + MLT1E1 LTR MaLR 1 654 0 2061 111 0 16 chr4 10070582 10070888 -192257459 + AluSc SINE Alu 1 301 -8 229 360 41 18 chr4 10070943 10071090 -192257257 - MIR3 SINE MIR -54 154 46 2093 102 0 0 chr4 10071263 10071547 -192256800 + AluSc SINE Alu 1 284 -25 449 321 6 37 chr4 10071614 10071776 -192256571 - MIR SINE MIR -105 157 1 1882 140 3 3 chr4 10071827 10072120 -192256227 + AluSx SINE Alu 1 293 -19 714 257 43 77 chr4 10072284 10072540 -192255807 + MLT1I LTR MaLR 87 331 -78 1835 143 24 3 chr4 10072540 10072833 -192255514 + AluSx SINE Alu 1 299 -13 714 257 43 77 chr4 10072833 10072903 -192255444 + MLT1I LTR MaLR 331 402 -7 494 288 7 22 chr4 10073251 10073390 -192254957 - L2 LINE L2 0 3272 3136 6176 62 140 59 chr4 10073417 10074498 -192253849 - MER11A LTR ERVK 0 1266 1 890 307 98 43 chr4 10074507 10075199 -192253148 - L2 LINE L2 -212 3101 2345 1524 159 0 55 chr4 10075199 10075508 -192252839 - AluJo SINE Alu -20 292 1 890 307 98 43 chr4 10075508 10075742 -192252605 - L2 LINE L2 -968 2345 2125 210 362 17 75 chr4 10076376 10076550 -192251797 + L3 LINE CR1 1033 1196 -381 871 126 0 0 chr4 10076572 10076699 -192251648 + AluSq/x SINE Alu 9 135 -178 1991 135 10 3 chr4 10076699 10077002 -192251345 + AluSq SINE Alu 1 305 -8 1176 182 4 48 chr4 10077042 10077159 -192251188 + MER58A DNA MER1_type 1 105 -2315 2109 151 135 0 chr4 10077159 10077536 -192250811 - MSTA LTR MaLR 0 428 1 1176 182 4 48 chr4 10077536 10077649 -192250698 + MER58A DNA MER1_type 105 221 -3 208 175 25 0 chr4 10077659 10077699 -192250648 + GA-rich Low_complexity Low_complexity 3 43 0 227 316 96 7 chr4 10077703 10077839 -192250508 + L3 LINE CR1 1230 1377 -200 4306 84 2 2 chr4 10077846 10078404 -192249943 + LTR6B LTR ERV1 1 558 0 21949 138 21 6 chr4 10078406 10081592 -192246755 + HERVS71 LTR ERV1 4 3236 -5742 13913 143 18 0 chr4 10081601 10084410 -192243937 + HERVS71 LTR ERV1 4870 7795 -1183 2180 105 13 3 chr4 10084399 10084712 -192243635 + HERVS71 LTR ERV1 8594 8909 -69 * 4355 62 16 0 chr4 10084712 10085261 -192243086 + LTR6B LTR ERV1 1 558 0 2140 86 7 0 chr4 10085516 10085808 -192242539 - AluSp SINE Alu -14 299 6 288 257 110 58 chr4 10086426 10086667 -192241680 - MLT1H LTR MaLR 0 595 248 1851 100 17 79 chr4 10086794 10087154 -192241193 - MER4A LTR ERV1 -6 658 263 446 121 0 15 chr4 10087154 10087220 -192241127 - MER4A LTR ERV1 -566 98 34 1628 126 0 33 chr4 10087221 10087492 -192240855 - AluSx SINE Alu -22 290 29 610 78 0 0 chr4 10087492 10087569 -192240778 - AluS SINE Alu -235 78 2 309 116 0 0 chr4 10087570 10087613 -192240734 - MER4A LTR ERV1 -620 44 2 442 270 110 6 chr4 10087613 10087776 -192240571 - MLT1H LTR MaLR -356 193 14 279 0 0 0 chr4 10087781 10087812 -192240535 + (CA)n Simple_repeat Simple_repeat 1 31 0 1761 87 146 0 chr4 10088093 10088347 -192240000 - AluSg SINE Alu -5 295 5 380 260 47 89 chr4 10088541 10088799 -192239548 + MLT1K LTR MaLR 180 426 -162 1802 146 30 0 chr4 10088922 10089223 -192239124 + AluSg SINE Alu 1 310 0 1134 299 23 0 chr4 10089225 10089529 -192238818 + LTR16C LTR ERVL 164 474 -17 585 122 0 5 chr4 10090040 10090230 -192238117 + AluSx SINE Alu 2 276 -36 595 188 70 26 chr4 10091012 10091168 -192237179 - MLT1I LTR MaLR -7 424 267 241 284 95 24 chr4 10091382 10091532 -192236815 - MIR SINE MIR -45 163 3 331 240 11 42 chr4 10091916 10092038 -192236309 - MER58 DNA MER1_type 0 2420 102 1474 200 37 31 chr4 10092047 10092397 -192235950 + L1MB5 LINE L1 5813 6164 -20 1329 220 14 0 chr4 10092397 10092692 -192235655 - AluJo SINE Alu -12 300 2 1823 133 3 42 chr4 10092861 10093170 -192235177 - AluJb SINE Alu -11 301 5 329 40 40 0 chr4 10093329 10093379 -192234968 + (TTTA)n Simple_repeat Simple_repeat 2 53 0 2019 124 0 0 chr4 10093381 10093663 -192234684 - AluSx SINE Alu -30 282 1 593 206 38 0 chr4 10093670 10093801 -192234546 - L1MB4 LINE L1 0 6180 6045 186 43 0 0 chr4 10093978 10094001 -192234346 + (CTG)n Simple_repeat Simple_repeat 3 25 0 1130 186 25 39 chr4 10094319 10094599 -192233748 - AluJo SINE Alu -36 276 1 1770 172 0 7 chr4 10094630 10094938 -192233409 + AluSx SINE Alu 7 312 0 385 332 65 13 chr4 10095006 10095238 -192233109 + L2 LINE L2 2710 2953 -361 293 248 70 104 chr4 10095237 10095521 -192232826 - L2 LINE L2 -91 3181 2910 * 1644 115 0 0 chr4 10095627 10095853 -192232494 + L1P LINE L1 1 226 -5920 841 100 0 9 chr4 10145853 10145990 -192182357 + AluSp/q SINE Alu 177 312 0 858 129 0 43 chr4 10147707 10147846 -192180501 - FLAM_C SINE Alu 0 133 1 886 164 6 73 chr4 10147876 10148041 -192180306 + FRAM SINE Alu 1 153 -23 2435 66 16 7 chr4 10148051 10148355 -192179992 + AluSp SINE Alu 2 308 -5 679 150 17 0 chr4 10148736 10148856 -192179491 - MSTA LTR MaLR -306 122 1 3586 205 23 29 chr4 10148856 10149050 -192179297 - MER21-int LTR ERV1 -919 3272 3078 1955 104 80 7 chr4 10149050 10149337 -192179010 - AluSx SINE Alu -4 308 1 3586 205 23 29 chr4 10149337 10149557 -192178790 - MER21-int LTR ERV1 -1113 3078 2858 2017 113 46 0 chr4 10149557 10149841 -192178506 - AluSp SINE Alu -15 298 2 3586 205 23 29 chr4 10149841 10150212 -192178135 - MER21-int LTR ERV1 -1333 2858 2491 1672 181 7 7 chr4 10150471 10150774 -192177573 - MER21-int LTR ERV1 -1711 2480 2178 2413 106 0 3 chr4 10150778 10151089 -192177258 - AluSq SINE Alu -3 310 1 934 175 5 31 chr4 10151091 10151285 -192177062 - MLT1D LTR MaLR -316 189 1 223 250 115 83 chr4 10151313 10151331 -192177016 + L2 LINE L2 1797 1813 -1501 2319 129 3 0 chr4 10151331 10151641 -192176706 - AluSp SINE Alu -2 311 1 223 250 115 83 chr4 10151641 10151778 -192176569 + L2 LINE L2 1813 1957 -1357 348 221 78 52 chr4 10152038 10152192 -192176155 - L1ME3A LINE L1 -44 6126 5969 282 158 0 0 chr4 10152216 10152273 -192176074 - L1MC1 LINE L1 -1 6332 6276 1200 118 0 24 chr4 10152273 10152443 -192175904 + AluSg SINE Alu 1 166 -144 1340 169 4 0 chr4 10152546 10152783 -192175564 - L1MC1 LINE L1 -313 6020 5783 2003 153 0 3 chr4 10152792 10153117 -192175230 - AluSx SINE Alu 0 312 1 345 250 164 8 chr4 10153443 10153571 -192174776 - MLT1J2 LTR MaLR -51 399 252 2631 91 100 5 chr4 10154260 10154669 -192173678 - LTR7 LTR ERV1 -2 448 1 1213 189 121 33 chr4 10155122 10155497 -192172850 - MLT1C LTR MaLR 0 505 59 * 2234 204 40 32 chr4 10155487 10155504 -192172843 - LTR1 LTR ERV1 -281 504 489 6341 125 11 10 chr4 10155504 10156422 -192171925 - LTR5 LTR ERVK 0 969 51 2234 204 40 32 chr4 10156422 10156904 -192171443 - LTR1 LTR ERV1 -296 489 1 1451 132 4 66 chr4 10157786 10158029 -192170318 + AluSg/x SINE Alu 73 300 -12 907 147 47 32 chr4 10158036 10158226 -192170121 + MSTB LTR MaLR 196 388 -38 260 86 0 0 chr4 10158225 10158260 -192170087 + U2 snRNA snRNA 1 35 -153 * 364 109 0 0 chr4 10158258 10158313 -192170034 + MSTB LTR MaLR 374 428 0 605 175 22 36 chr4 10158313 10158450 -192169897 + MER21-int LTR ERV1 3268 3402 -789 2311 114 0 0 chr4 10158450 10158747 -192169600 - AluSg SINE Alu -13 297 1 2304 118 0 9 chr4 10160270 10160585 -192167762 - AluSx SINE Alu 0 312 1 719 274 58 0 chr4 10160797 10161020 -192167327 - MER82 DNA MER2_type 0 653 418 2136 112 38 0 chr4 10161021 10161308 -192167039 - AluSx SINE Alu -14 298 1 323 157 112 34 chr4 10162929 10162981 -192165366 - MLT2A2 LTR ERVL 0 453 407 267 31 0 0 chr4 10162981 10163013 -192165334 + (TA)n Simple_repeat Simple_repeat 2 33 0 323 157 112 34 chr4 10163013 10163049 -192165298 - MLT2A2 LTR ERVL -46 407 358 237 132 0 0 chr4 10163048 10163086 -192165261 + MLT2A1 LTR ERVL 349 386 -58 * 243 0 0 0 chr4 10163089 10163116 -192165231 + (TG)n Simple_repeat Simple_repeat 2 28 0 181 323 39 55 chr4 10163161 10163172 -192165175 - L2 LINE L2 -77 3236 3226 2078 128 3 7 chr4 10163172 10163470 -192164877 + AluSg SINE Alu 1 297 -13 181 323 39 55 chr4 10163470 10163585 -192164762 - L2 LINE L2 -87 3226 3112 202 283 0 0 chr4 10163767 10163820 -192164527 + MIR SINE MIR 203 255 -7 465 19 0 0 chr4 10165188 10165242 -192163105 + (TA)n Simple_repeat Simple_repeat 2 55 0 747 121 0 0 chr4 10165242 10165341 -192163006 - AluSx SINE Alu -18 291 193 1205 68 7 7 chr4 10165342 10165488 -192162859 - AluSx SINE Alu -167 146 1 1262 193 42 87 chr4 10165494 10165855 -192162492 - L1MB7 LINE L1 -9 6175 5834 2067 127 3 7 chr4 10165855 10166146 -192162201 - AluSx SINE Alu -17 295 6 1262 193 42 87 chr4 10166146 10166210 -192162137 - L1MB7 LINE L1 -350 5834 5769 724 208 6 6 chr4 10167072 10167250 -192161097 + CT-rich Low_complexity Low_complexity 1 178 0 2040 137 20 3 chr4 10167250 10167556 -192160791 - AluSq SINE Alu -2 311 1 23 33 0 0 chr4 10167935 10167965 -192160382 + AT_rich Low_complexity Low_complexity 1 30 0 785 196 0 0 chr4 10167968 10168101 -192160246 - FLAM_C SINE Alu 0 133 1 762 113 9 0 chr4 10168487 10168602 -192159745 - THE1B LTR MaLR -248 116 1 776 262 29 57 chr4 10169007 10169286 -192159061 - MLT1A2 LTR MaLR -17 357 87 319 313 67 8 chr4 10169308 10169442 -192158905 - MIR SINE MIR -73 189 48 356 345 20 14 chr4 10169590 10169738 -192158609 + L2 LINE L2 3165 3313 0 570 260 0 0 chr4 10170782 10171130 -192157217 + (TG)n Simple_repeat Simple_repeat 1 348 0 543 255 0 0 chr4 10171199 10171468 -192156879 + (TG)n Simple_repeat Simple_repeat 1 269 0 194 267 67 33 chr4 10172577 10172637 -192155710 + MIR3 SINE MIR 146 207 -1 523 328 114 45 chr4 10172946 10173411 -192154936 - L2 LINE L2 -1 3271 2765 429 54 32 172 chr4 10173411 10173450 -192154897 + MADE1 DNA Mariner 1 21 -59 2003 136 13 20 chr4 10173450 10173752 -192154595 - AluSx SINE Alu -12 300 1 429 54 32 172 chr4 10173752 10173805 -192154542 + MADE1 DNA Mariner 21 80 0 523 328 114 45 chr4 10173805 10173885 -192154462 - L2 LINE L2 -507 2765 2692 466 244 8 17 chr4 10173907 10174026 -192154321 + MER58B DNA MER1_type 210 327 -14 1631 186 3 21 chr4 10174213 10174498 -192153849 + AluJo SINE Alu 3 282 -30 294 87 0 0 chr4 10174498 10174544 -192153803 + (TC)n Simple_repeat Simple_repeat 1 46 0 378 0 0 0 chr4 10174545 10174587 -192153760 + (TA)n Simple_repeat Simple_repeat 2 43 0 1175 231 15 45 chr4 10174628 10174650 -192153697 + L1MB3 LINE L1 5794 5815 -368 1931 141 7 0 chr4 10174650 10174927 -192153420 + AluSx SINE Alu 1 279 -33 252 111 0 0 chr4 10174934 10174979 -192153368 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 1175 231 15 45 chr4 10174979 10175073 -192153274 + L1MB3 LINE L1 5821 5916 -267 2000 141 7 0 chr4 10175073 10175364 -192152983 + AluSx SINE Alu 3 295 -17 1175 231 15 45 chr4 10175364 10175616 -192152731 + L1MB3 LINE L1 5916 6153 -30 30 0 0 0 chr4 10175636 10175666 -192152681 + AT_rich Low_complexity Low_complexity 1 30 0 3460 211 21 64 chr4 10176128 10177141 -192151206 + LTR5 LTR ERVK 1 969 0 212 158 0 0 chr4 10177410 10177448 -192150899 + (ATG)n Simple_repeat Simple_repeat 3 40 0 289 354 51 23 chr4 10177467 10177682 -192150665 - MIR SINE MIR -10 252 32 2107 123 0 7 chr4 10178076 10178386 -192149961 + AluSg SINE Alu 1 308 -2 211 306 63 27 chr4 10178773 10178884 -192149463 + L2 LINE L2 3158 3272 0 1792 154 0 20 chr4 10178949 10179254 -192149093 - AluSc SINE Alu -10 299 1 778 237 280 15 chr4 10180966 10183179 -192145168 - SATR1 Satellite Satellite -6 2800 1 1574 225 100 37 chr4 10183372 10185008 -192143339 - SATR1 Satellite Satellite -20 1739 1 25 95 0 0 chr4 10185120 10185194 -192143153 + AT_rich Low_complexity Low_complexity 1 74 0 386 216 5 63 chr4 10185244 10185434 -192142913 + (TTA)n Simple_repeat Simple_repeat 2 180 0 18118 99 14 6 chr4 10185525 10188191 -192140156 + HERVE LTR ERV1 1108 3795 -4018 360 257 176 0 chr4 10188728 10188771 -192139576 + MER58C DNA MER1_type 56 90 -2330 234 0 0 0 chr4 10188771 10188797 -192139550 + (TC)n Simple_repeat Simple_repeat 1 26 0 * 396 0 0 0 chr4 10188796 10188840 -192139507 + (CA)n Simple_repeat Simple_repeat 1 44 0 360 257 176 0 chr4 10188797 10188932 -192139415 + MER58C DNA MER1_type 90 215 0 678 301 98 3 chr4 10188933 10189247 -192139100 + MLT1L LTR MaLR 218 561 -54 853 214 75 15 chr4 10189247 10189448 -192138899 - MER58A DNA MER1_type 0 224 12 1352 216 131 45 chr4 10190491 10190940 -192137407 + MLT1D LTR MaLR 1 488 -17 2837 106 48 9 chr4 10191002 10191322 -192137025 + L1MA2 LINE L1 5846 6189 -115 1801 94 123 29 chr4 10191322 10191598 -192136749 + AluY SINE Alu 2 303 -8 2837 106 48 9 chr4 10191598 10191713 -192136634 + L1MA2 LINE L1 6189 6298 -6 329 290 195 30 chr4 10191893 10192262 -192136085 + L2 LINE L2 2015 2444 -870 2941 162 133 11 chr4 10192297 10192927 -192135420 + MER39 LTR ERV1 1 707 0 706 279 80 78 chr4 10192928 10193638 -192134709 + L2 LINE L2 2487 3213 -59 1698 170 38 10 chr4 10193698 10193986 -192134361 - AluJb SINE Alu -16 296 1 189 0 0 0 chr4 10194056 10194077 -192134270 + (A)n Simple_repeat Simple_repeat 1 21 0 741 271 112 77 chr4 10194411 10194993 -192133354 + MLT1L LTR MaLR 1 602 -13 3471 216 111 45 chr4 10194998 10196189 -192132158 - L1MC4 LINE L1 -3 8039 6770 257 279 81 22 chr4 10196450 10196586 -192131761 - MLT1J2 LTR MaLR -240 210 67 210 331 71 76 chr4 10196918 10197380 -192130967 - L2 LINE L2 -339 2975 2516 891 26 0 17 chr4 10197898 10198014 -192130333 - L1HS LINE L1 0 6155 6042 456 223 54 0 chr4 10198014 10198126 -192130221 - MIR SINE MIR -125 137 20 2055 117 13 17 chr4 10199068 10199368 -192128979 - AluSx SINE Alu -13 299 1 377 281 96 0 chr4 10199432 10199567 -192128780 + L2 LINE L2 2898 3045 -227 265 314 20 0 chr4 10199636 10199738 -192128609 - MLT1K LTR MaLR 0 588 485 282 269 22 0 chr4 10199772 10199906 -192128441 + CT-rich Low_complexity Low_complexity 2 138 0 533 255 43 70 chr4 10200184 10200494 -192127853 - MLT1G3 LTR MaLR -177 378 59 2299 134 97 35 chr4 10200526 10200929 -192127418 + MSTA LTR MaLR 1 428 0 339 274 89 13 chr4 10201012 10201169 -192127178 - MLT1J2 LTR MaLR -229 221 53 196 270 104 35 chr4 10201946 10202061 -192126286 + L2 LINE L2 2824 2946 -326 367 276 92 29 chr4 10202120 10202294 -192126053 + L2 LINE L2 3095 3279 -34 407 155 0 0 chr4 10202368 10202439 -192125908 - AluS SINE Alu -11 301 231 306 314 96 78 chr4 10202711 10202982 -192125365 - L2 LINE L2 -1 3271 2996 606 63 0 0 chr4 10203112 10203191 -192125156 + (TTCC)n Simple_repeat Simple_repeat 2 80 0 1879 125 0 45 chr4 10203205 10203494 -192124853 - AluSx SINE Alu -36 276 1 1510 143 198 0 chr4 10203882 10204140 -192124207 - AluSg1 SINE Alu 0 309 1 406 224 12 0 chr4 10204163 10204248 -192124099 - MIR SINE MIR -106 156 71 2511 74 0 0 chr4 10204491 10204788 -192123559 - AluY SINE Alu -14 297 1 285 29 0 0 chr4 10204813 10204847 -192123500 + (TC)n Simple_repeat Simple_repeat 1 34 0 210 333 13 0 chr4 10204847 10204922 -192123425 + L2 LINE L2 3197 3272 0 204 269 15 30 chr4 10204976 10205043 -192123304 - L2 LINE L2 -268 3004 2939 223 345 61 14 chr4 10205417 10205565 -192122782 - L2 LINE L2 -830 2484 2330 221 372 78 0 chr4 10206228 10206357 -192121990 - MIR SINE MIR -77 185 47 328 220 44 55 chr4 10209951 10210042 -192118305 + L2 LINE L2 3222 3311 -2 348 259 0 74 chr4 10210210 10210318 -192118029 + MIR3 SINE MIR 61 160 -48 671 312 71 67 chr4 10210758 10211194 -192117153 - L2 LINE L2 -33 3280 2843 804 269 27 0 chr4 10211261 10211447 -192116900 - MIR SINE MIR -59 203 13 448 258 80 49 chr4 10211672 10211835 -192116512 - MIR SINE MIR -48 214 47 740 176 118 43 chr4 10211836 10212023 -192116324 + MER20 DNA MER1_type 1 201 -18 331 256 116 38 chr4 10212096 10212202 -192116145 + MIR SINE MIR 31 145 -63 531 207 44 68 chr4 10212282 10212414 -192115933 - MLT1F1 LTR MaLR -421 146 13 605 203 153 21 chr4 10212439 10213255 -192115092 - L1MC4 LINE L1 -3 8039 7046 1768 177 3 6 chr4 10213255 10213566 -192114781 - AluJo SINE Alu -2 310 1 605 203 153 21 chr4 10213566 10213605 -192114742 - L1MC4 LINE L1 -996 7046 7014 1794 236 23 21 chr4 10213777 10214205 -192114142 - L1MC4 LINE L1 -1028 7014 6586 442 305 102 0 chr4 10215013 10215200 -192113147 - MIR SINE MIR -4 258 53 374 320 35 17 chr4 10215544 10215716 -192112631 + MER117 DNA MER1_type 20 194 -3 312 325 73 8 chr4 10215727 10215850 -192112497 + MER5B DNA MER1_type 3 133 -45 613 236 58 94 chr4 10216386 10216662 -192111685 + MLT1-int LTR MaLR 1106 1371 0 1156 249 81 35 chr4 10216666 10217012 -192111335 + MLT1F1 LTR MaLR 206 567 0 1732 173 0 61 chr4 10217234 10217563 -192110784 - AluJo SINE Alu -3 309 1 581 136 11 11 chr4 10217846 10217934 -192110413 - 5S rRNA rRNA -31 90 3 1750 61 5 0 chr4 10217945 10218158 -192110189 - AluSp SINE Alu -9 304 91 427 247 118 12 chr4 10218287 10218457 -192109890 - MIR3 SINE MIR -17 191 4 183 340 160 19 chr4 10219014 10219120 -192109227 + MIR SINE MIR 24 144 -64 2093 109 10 23 chr4 10219224 10219527 -192108820 - AluSq SINE Alu -14 299 1 460 269 34 20 chr4 10219530 10219679 -192108668 - MIR SINE MIR -75 187 37 222 311 0 0 chr4 10220006 10220080 -192108267 - MIR SINE MIR -1 261 188 2213 106 7 10 chr4 10220082 10220384 -192107963 - AluSc SINE Alu -8 301 1 687 312 17 4 chr4 10220957 10221188 -192107159 - MIR SINE MIR -12 250 17 397 279 31 0 chr4 10221511 10221640 -192106707 + MIR SINE MIR 116 248 -14 484 258 90 77 chr4 10221650 10222104 -192106243 - MLT1I LTR MaLR 0 409 1 192 314 47 12 chr4 10222140 10222226 -192106121 - L2 LINE L2 -16 3256 3168 453 301 49 32 chr4 10222305 10222491 -192105856 - MIR SINE MIR -62 146 5 448 127 63 0 chr4 10222869 10222948 -192105399 - AluJ/FRAM SINE Alu -15 297 214 254 261 0 34 chr4 10222992 10223080 -192105267 + L2 LINE L2 3188 3272 0 227 263 32 32 chr4 10223715 10223810 -192104537 - MIR3 SINE MIR -6 202 108 262 299 37 30 chr4 10223821 10223955 -192104392 + MIR SINE MIR 20 154 -108 1727 193 45 11 chr4 10224295 10224360 -192103987 - MLT1A1 LTR MaLR 0 365 304 252 0 0 0 chr4 10224360 10224388 -192103959 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 1727 193 45 11 chr4 10224388 10224675 -192103672 - MLT1A1 LTR MaLR -61 304 1 562 230 56 8 chr4 10225182 10225308 -192103039 - LTR16B LTR ERVL -268 196 65 1663 201 25 23 chr4 10225324 10225676 -192102671 + MLT1B LTR MaLR 6 358 -32 1441 163 137 10 chr4 10225676 10225982 -192102365 - MER2 DNA MER2_type 0 345 1 257 343 122 12 chr4 10226494 10226739 -192101608 - LTR16C LTR ERVL -126 365 94 2235 96 13 19 chr4 10227626 10227938 -192100409 - AluSq SINE Alu -3 310 1 286 232 102 95 chr4 10228134 10228345 -192100002 + MIR SINE MIR 30 241 -21 540 223 109 6 chr4 10228444 10228619 -192099728 - MIR SINE MIR -30 232 40 352 272 139 23 chr4 10228733 10228906 -192099441 + L2 LINE L2 3121 3313 0 224 390 10 0 chr4 10228913 10229013 -192099334 - L2 LINE L2 -17 3296 3196 437 254 119 6 chr4 10229891 10230068 -192098279 - LTR33A LTR ERVL -10 513 317 759 300 97 25 chr4 10230179 10230499 -192097848 - MLT1I LTR MaLR -4 405 63 1667 143 20 8 chr4 10230501 10230753 -192097594 + AluSq SINE Alu 11 265 -48 979 228 49 4 chr4 10230868 10231114 -192097233 - MIR SINE MIR -3 259 3 2997 122 60 6 chr4 10231199 10231684 -192096663 + MER9 LTR ERVK 1 511 0 329 322 58 76 chr4 10232288 10232670 -192095677 + L2 LINE L2 2862 3236 -36 216 204 0 0 chr4 10233573 10233617 -192094730 + (TAA)n Simple_repeat Simple_repeat 2 45 0 372 239 54 15 chr4 10234702 10234832 -192093515 + MIR SINE MIR 89 223 -39 183 80 0 0 chr4 10234917 10234942 -192093405 + (T)n Simple_repeat Simple_repeat 1 25 0 528 308 54 23 chr4 10235077 10235337 -192093010 + L2 LINE L2 3046 3313 0 199 254 99 0 chr4 10235378 10235449 -192092898 + MIR SINE MIR 74 151 -111 880 291 65 63 chr4 10236136 10236281 -192092066 + MLT1K LTR MaLR 125 268 -320 1059 219 70 110 chr4 10236281 10236852 -192091495 + MLT1H LTR MaLR 2 549 0 880 291 65 63 chr4 10236852 10237167 -192091180 + MLT1K LTR MaLR 268 586 -2 193 388 10 0 chr4 10237312 10237415 -192090932 - L2 LINE L2 -1 3312 3209 183 283 0 0 chr4 10238611 10238657 -192089690 - L2 LINE L2 0 3272 3227 983 128 0 0 chr4 10238888 10239021 -192089326 + AluSx SINE Alu 1 133 -180 1258 134 0 0 chr4 10239051 10239230 -192089117 + AluSx SINE Alu 120 298 -14 250 389 87 0 chr4 10239311 10239437 -192088910 + L2 LINE L2 3136 3272 0 413 223 11 11 chr4 10239542 10239636 -192088711 - MLT1H LTR MaLR 0 549 456 348 302 57 48 chr4 10240441 10240689 -192087658 - MLT1J LTR MaLR 0 511 262 240 224 102 61 chr4 10240947 10240962 -192087385 - Charlie7 DNA MER1_type -2510 102 89 2275 112 0 0 chr4 10240962 10241276 -192087071 + AluSx SINE Alu 1 314 0 240 224 102 61 chr4 10241276 10241356 -192086991 - Charlie7 DNA MER1_type -2523 89 1 254 160 20 0 chr4 10241368 10241418 -192086929 - MLT1D LTR MaLR 0 505 455 1813 144 23 31 chr4 10241421 10241768 -192086579 + L1MA9 LINE L1 5958 6162 -16 1834 192 52 63 chr4 10241928 10242391 -192085956 - MLT1D LTR MaLR -41 464 7 411 234 45 36 chr4 10242411 10242522 -192085825 - L2 LINE L2 0 3313 3202 956 185 60 52 chr4 10243429 10243783 -192084564 - MER31B LTR ERV1 0 466 1 2342 87 17 0 chr4 10243915 10244215 -192084132 + AluY SINE Alu 1 305 -6 6425 226 59 55 chr4 10244344 10244726 -192083621 - L1ME LINE L1 -604 5956 5577 2107 141 0 0 chr4 10244726 10245030 -192083317 + AluSx SINE Alu 1 304 -8 6425 226 59 55 chr4 10245030 10246426 -192081921 - L1ME LINE L1 -983 5577 4188 2340 75 7 0 chr4 10246426 10246732 -192081615 + L1PA7 LINE L1 5847 6154 0 6425 226 59 55 chr4 10246732 10247693 -192080654 - L1ME LINE L1 -2372 4188 2604 493 249 60 38 chr4 10247706 10247891 -192080456 - L1ME LINE L1 -4658 1882 1694 277 329 100 46 chr4 10247911 10248191 -192080156 - L1ME LINE L1 -6205 335 41 1338 190 62 29 chr4 10249063 10249171 -192079176 + MSTC LTR MaLR 1 104 -324 207 114 0 0 chr4 10249171 10249206 -192079141 + (TGAA)n Simple_repeat Simple_repeat 4 38 0 1338 190 62 29 chr4 10249206 10249464 -192078883 + MSTC LTR MaLR 104 426 -2 249 361 54 39 chr4 10249700 10249830 -192078517 + L2 LINE L2 3137 3268 -4 379 344 6 33 chr4 10250344 10250524 -192077823 - L3 LINE CR1 -11 1566 1392 347 286 32 71 chr4 10250534 10250660 -192077687 - MER117 DNA MER1_type -6 191 71 222 239 22 0 chr4 10251035 10251081 -192077266 - MIR SINE MIR -134 74 28 24 0 0 0 chr4 10251318 10251342 -192077005 + AT_rich Low_complexity Low_complexity 1 24 0 385 222 14 0 chr4 10252372 10252444 -192075903 - AluJ/FLAM SINE Alu -219 83 11 340 256 197 0 chr4 10252652 10252789 -192075558 + MIR SINE MIR 47 210 -52 285 257 67 89 chr4 10252885 10253064 -192075283 + MIR SINE MIR 21 195 -67 1760 266 92 16 chr4 10253086 10253825 -192074522 + L2 LINE L2 2298 3083 -230 1398 128 0 0 chr4 10254286 10254473 -192073874 + AluSq SINE Alu 1 187 -126 6424 100 18 8 chr4 10254474 10255706 -192072641 + L1PA11 LINE L1 4944 6174 0 210 233 11 111 chr4 10256092 10256182 -192072165 - MIR SINE MIR -112 150 70 755 151 88 12 chr4 10256360 10256558 -192071789 + MLT1B LTR MaLR 1 232 -158 2516 149 169 26 chr4 10256558 10257095 -192071252 + LTR18B LTR ERVL 1 614 0 902 185 0 0 chr4 10257119 10257270 -192071077 + MLT1B LTR MaLR 228 378 -12 214 228 76 0 chr4 10257885 10257964 -192070383 + MIR SINE MIR 85 169 -93 630 288 36 24 chr4 10259111 10259392 -192068955 + L2 LINE L2 2792 3075 -238 361 281 86 16 chr4 10260330 10260458 -192067889 - MER20B DNA MER1_type -604 179 43 1865 64 4 60 chr4 10260880 10260969 -192067378 + L1PB1 LINE L1 5887 5980 -171 2329 112 0 3 chr4 10260969 10261283 -192067064 + AluSq SINE Alu 1 313 0 1865 64 4 60 chr4 10261283 10261474 -192066873 + L1PB1 LINE L1 5980 6151 0 304 224 0 0 chr4 10262816 10262874 -192065473 + L2 LINE L2 3214 3271 -1 352 333 67 7 chr4 10263112 10263262 -192065085 + MIR SINE MIR 103 261 -1 227 265 36 12 chr4 10263286 10263369 -192064978 - MIR SINE MIR -61 147 71 234 156 0 0 chr4 10263369 10263414 -192064933 + (ATG)n Simple_repeat Simple_repeat 1 45 0 467 298 70 56 chr4 10263449 10263478 -192064869 - MIR SINE MIR -32 230 203 5218 141 32 57 chr4 10263478 10265201 -192063146 + L1PA13 LINE L1 4441 6159 -4 467 298 70 56 chr4 10265201 10265386 -192062961 - MIR SINE MIR -59 203 13 313 250 7 43 chr4 10265672 10265812 -192062535 - L1ME4a LINE L1 -1 6120 5986 840 263 73 34 chr4 10265817 10265953 -192062394 - HAL1b LINE L1 -901 447 318 1807 138 66 39 chr4 10265953 10266316 -192062031 - THE1C LTR MaLR 0 375 3 840 263 73 34 chr4 10266316 10266536 -192061811 - HAL1b LINE L1 -1030 318 77 217 261 0 0 chr4 10266565 10266611 -192061736 + CT-rich Low_complexity Low_complexity 3 48 0 251 299 50 50 chr4 10267638 10267808 -192060539 - MIR SINE MIR -50 212 38 951 282 169 6 chr4 10268038 10268400 -192059947 - LTR16C LTR ERVL 0 491 71 789 299 24 36 chr4 10268733 10268984 -192059363 + MIR SINE MIR 15 262 0 356 240 44 11 chr4 10269253 10269357 -192058990 - MIR SINE MIR -61 147 56 180 97 0 0 chr4 10269358 10269389 -192058958 + (A)n Simple_repeat Simple_repeat 1 31 0 391 259 133 0 chr4 10269935 10270078 -192058269 + MIR SINE MIR 31 192 -70 2369 68 0 0 chr4 10270229 10270521 -192057826 - AluY SINE Alu -19 292 1 2686 10 0 3 chr4 10270632 10270938 -192057409 - AluY SINE Alu -6 305 1 409 301 94 15 chr4 10271181 10271392 -192056955 - MIR SINE MIR -18 190 11 181 301 165 19 chr4 10271702 10271805 -192056542 + MIR SINE MIR 21 138 -124 516 295 65 20 chr4 10272169 10272338 -192056009 + MIR SINE MIR 52 233 -29 1901 145 175 11 chr4 10272338 10272704 -192055643 - MSTA LTR MaLR 0 428 3 516 295 65 20 chr4 10272704 10272734 -192055613 + MIR SINE MIR 233 260 -2 208 333 67 19 chr4 10272755 10272860 -192055487 - L2 LINE L2 -2 3270 3161 337 244 44 31 chr4 10273160 10273310 -192055037 - MIR3 SINE MIR -17 191 37 233 266 210 8 chr4 10273725 10273849 -192054498 + L2 LINE L2 3158 3306 -7 2163 82 7 16 chr4 10273905 10274210 -192054137 - AluY SINE Alu -9 302 1 197 266 42 63 chr4 10274395 10274538 -192053809 - L2 LINE L2 -568 2746 2607 14753 217 60 19 chr4 10275172 10277453 -192050894 + L1PA13 LINE L1 2 2188 -4609 2751 10 0 0 chr4 10277453 10277760 -192050587 - AluYb8 SINE Alu -11 307 1 14753 217 60 19 chr4 10277760 10278117 -192050230 + L1PA13 LINE L1 2188 2529 -4268 2011 109 53 0 chr4 10278117 10278402 -192049945 + AluSx SINE Alu 1 300 -12 14753 217 60 19 chr4 10278402 10281024 -192047323 + L1PA13 LINE L1 2529 5494 -1303 209 269 86 21 chr4 10281312 10281405 -192046942 - L2 LINE L2 -1 3271 3173 672 218 47 21 chr4 10281681 10281874 -192046473 + LTR16C LTR ERVL 281 478 -13 258 308 13 13 chr4 10281997 10282075 -192046272 - MER81 DNA DNA -36 78 1 415 222 10 20 chr4 10282559 10282658 -192045689 + MER94 DNA DNA 17 114 -20 192 222 181 0 chr4 10282658 10282730 -192045617 - MIR SINE MIR -125 137 53 2212 150 33 34 chr4 10282730 10283276 -192045071 + MLT2A2 LTR ERVL 3 544 -10 391 254 77 0 chr4 10283428 10283531 -192044816 - MIR3 SINE MIR -51 157 54 180 313 16 0 chr4 10284778 10284842 -192043505 + L2 LINE L2 3001 3065 -207 791 289 75 21 chr4 10284887 10285088 -192043259 + L2 LINE L2 2929 3156 -157 2656 112 18 50 chr4 10285088 10285527 -192042820 - MSTA LTR MaLR -1 427 3 791 289 75 21 chr4 10285527 10285657 -192042690 + L2 LINE L2 3156 3278 -35 315 71 0 0 chr4 10285719 10285761 -192042586 + (TGAA)n Simple_repeat Simple_repeat 4 45 0 302 345 0 0 chr4 10285784 10285868 -192042479 + L2 LINE L2 3187 3270 -2 477 292 182 15 chr4 10285897 10286041 -192042306 + L2 LINE L2 2715 2834 -479 3479 137 24 7 chr4 10286041 10286595 -192041752 + MER34B LTR ERV1 1 563 -2 477 292 182 15 chr4 10286595 10286960 -192041387 + L2 LINE L2 2834 3313 0 386 313 47 40 chr4 10287052 10287176 -192041171 + L2 LINE L2 3122 3249 -23 1673 167 46 0 chr4 10287176 10287458 -192040889 - AluJo SINE Alu -17 295 1 386 313 47 40 chr4 10287458 10287483 -192040864 + L2 LINE L2 3249 3272 0 1523 239 44 28 chr4 10287796 10288232 -192040115 + LTR47B LTR ERVL 1 443 0 610 191 0 0 chr4 10288818 10288923 -192039424 + MLT1D LTR MaLR 47 151 -354 995 237 19 0 chr4 10289156 10289371 -192038976 + MER20 DNA MER1_type 1 219 0 238 256 158 0 chr4 10290103 10290185 -192038162 + MIR SINE MIR 50 144 -118 325 86 35 0 chr4 10290224 10290282 -192038065 + (TTA)n Simple_repeat Simple_repeat 2 61 0 362 325 69 32 chr4 10290350 10290596 -192037751 + L2 LINE L2 2674 2928 -386 325 250 60 30 chr4 10291422 10291522 -192036825 + MIR SINE MIR 159 261 -1 183 100 0 0 chr4 10291522 10291552 -192036795 + (ATG)n Simple_repeat Simple_repeat 2 31 0 181 235 59 47 chr4 10293276 10293361 -192034986 + L2 LINE L2 2672 2757 -557 231 219 21 125 chr4 10293690 10293786 -192034561 + L2 LINE L2 3223 3308 -5 789 229 124 40 chr4 10293857 10294281 -192034066 + MLT1C LTR MaLR 1 467 0 211 261 46 15 chr4 10294745 10294810 -192033537 + MIR SINE MIR 29 95 -167 631 245 13 50 chr4 10294945 10295104 -192033243 - FRAM SINE Alu -13 153 1 21 0 0 0 chr4 10295111 10295132 -192033215 + AT_rich Low_complexity Low_complexity 1 21 0 1860 182 71 35 chr4 10295312 10295763 -192032584 - MLT1C LTR MaLR 0 467 1 305 281 176 7 chr4 10295763 10295916 -192032431 + MIR SINE MIR 14 192 -70 358 193 108 0 chr4 10296143 10296226 -192032121 - MIR3 SINE MIR -25 183 92 324 250 0 29 chr4 10297070 10297174 -192031173 + LTR33 LTR ERVL 414 514 -7 270 281 11 0 chr4 10297188 10297334 -192031013 + L2 LINE L2 3194 3306 -7 1296 259 89 44 chr4 10297396 10297878 -192030469 + MLT1H LTR MaLR 4 549 0 279 333 104 5 chr4 10297918 10298110 -192030237 + L2 LINE L2 2636 2846 -468 281 230 40 54 chr4 10298235 10298309 -192030038 - MER91B DNA MER1_type 0 190 118 203 233 0 0 chr4 10299445 10299488 -192028859 - MER91B DNA MER1_type -153 43 1 320 269 96 10 chr4 10299630 10299734 -192028613 + MIR SINE MIR 18 130 -132 563 210 0 25 chr4 10300071 10300190 -192028157 + MER106B DNA MER1_type 36 151 -908 356 269 39 0 chr4 10300226 10300330 -192028017 + LTR33 LTR ERVL 354 461 -60 1581 160 11 4 chr4 10300351 10300651 -192027696 + AluJo SINE Alu 18 319 0 218 213 21 0 chr4 10301225 10301272 -192027075 + (TTCA)n Simple_repeat Simple_repeat 1 48 0 236 269 75 0 chr4 10302081 10302148 -192026199 + L2 LINE L2 3162 3233 -39 2213 255 63 44 chr4 10302196 10302905 -192025442 + MER21B LTR ERV1 15 737 -126 192 211 0 0 chr4 10303005 10303043 -192025304 + L2 LINE L2 3272 3309 -4 197 253 193 0 chr4 10303054 10303137 -192025210 - L2 LINE L2 -13 3300 3202 381 102 0 0 chr4 10303377 10303436 -192024911 + (TG)n Simple_repeat Simple_repeat 1 59 0 552 249 85 6 chr4 10305218 10305383 -192022964 - MER5B DNA MER1_type 0 178 1 348 253 22 18 chr4 10305536 10305708 -192022639 - MER58 DNA MER1_type 0 2420 20 482 368 0 0 chr4 10305708 10305879 -192022468 + L3 LINE CR1 1405 1575 -2 272 388 26 0 chr4 10306376 10306492 -192021855 + MIR SINE MIR 20 138 -124 2022 69 0 4 chr4 10306492 10306752 -192021595 + AluY SINE Alu 43 301 -10 258 32 0 0 chr4 10307156 10307187 -192021160 + (CA)n Simple_repeat Simple_repeat 2 32 0 281 148 74 0 chr4 10307241 10307295 -192021052 + MIR SINE MIR 203 260 -2 437 386 73 0 chr4 10307388 10307608 -192020739 + MIR SINE MIR 20 255 -7 459 297 179 16 chr4 10307902 10308215 -192020132 + MLT1J2 LTR MaLR 87 450 0 662 240 0 39 chr4 10308326 10308480 -192019867 - AluJo SINE Alu -44 268 121 4252 74 7 4 chr4 10308656 10309207 -192019140 + L1PA10 LINE L1 5606 6158 -10 427 244 53 38 chr4 10309624 10309755 -192018592 - L2 LINE L2 -1 3312 3180 1014 225 14 19 chr4 10309764 10309973 -192018374 + MER58A DNA MER1_type 9 216 -8 252 265 0 15 chr4 10310093 10310161 -192018186 - L2 LINE L2 -236 3077 3011 196 221 58 58 chr4 10310158 10310244 -192018103 + L2 LINE L2 3183 3268 -45 * 434 63 0 16 chr4 10310448 10310511 -192017836 + (TG)n Simple_repeat Simple_repeat 1 62 0 300 321 19 19 chr4 10310888 10310994 -192017353 - MIR SINE MIR -56 152 47 183 352 23 0 chr4 10311132 10311220 -192017127 + MIR SINE MIR 173 262 0 554 317 7 40 chr4 10311677 10311927 -192016420 + MIR SINE MIR 7 249 -13 188 288 41 14 chr4 10311928 10312001 -192016346 - MIR SINE MIR -3 259 185 2190 55 4 7 chr4 10312009 10312281 -192016066 + L1PA7 LINE L1 5865 6135 -19 291 54 0 0 chr4 10312281 10312318 -192016029 + (TA)n Simple_repeat Simple_repeat 2 38 0 367 259 72 126 chr4 10312939 10313287 -192015060 - L2 LINE L2 0 3272 2944 254 309 48 33 chr4 10313859 10313994 -192014353 + MIR SINE MIR 26 171 -37 557 246 123 0 chr4 10314043 10314222 -192014125 - MIR SINE MIR -44 218 18 689 258 6 18 chr4 10314272 10314439 -192013908 - MIR3 SINE MIR -14 194 30 355 337 0 8 chr4 10315398 10315518 -192012829 + MIR SINE MIR 37 154 -63 282 283 62 35 chr4 10315599 10315744 -192012603 - MIR SINE MIR -94 168 20 488 370 40 9 chr4 10316507 10316731 -192011616 + MIR SINE MIR 20 250 -12 394 254 8 51 chr4 10316767 10316885 -192011462 + MIR3 SINE MIR 48 160 -48 1013 198 20 20 chr4 10316888 10317090 -192011257 - MIR SINE MIR -3 259 58 181 333 97 0 chr4 10317305 10317377 -192010970 + L2 LINE L2 3193 3271 -1 390 108 0 0 chr4 10317559 10317624 -192010723 + (GGGA)n Simple_repeat Simple_repeat 1 65 0 714 290 84 9 chr4 10318068 10318506 -192009841 + L1ME4a LINE L1 5603 6073 -48 2487 240 113 10 chr4 10319706 10320959 -192007388 - L1ME1 LINE L1 -5 6161 4753 794 279 82 9 chr4 10320964 10321197 -192007150 - MIR SINE MIR -10 252 3 391 256 0 26 chr4 10321378 10321495 -192006852 + MLT1B LTR MaLR 3 116 -274 * 1676 194 29 62 chr4 10321494 10321641 -192006706 + MLT1C LTR MaLR 64 214 -253 1926 120 3 43 chr4 10321641 10321940 -192006407 + AluSx SINE Alu 18 304 -8 1676 194 29 62 chr4 10321940 10322210 -192006137 + MLT1C LTR MaLR 214 467 0 297 128 0 0 chr4 10322997 10323044 -192005303 + (TC)n Simple_repeat Simple_repeat 1 47 0 2577 105 16 13 chr4 10324643 10325016 -192003331 - THE1C LTR MaLR -1 374 1 245 232 126 53 chr4 10325482 10325577 -192002770 + L2 LINE L2 2641 2742 -572 450 139 0 0 chr4 10325583 10325669 -192002678 + L1 LINE L1 5154 5239 -907 338 342 38 33 chr4 10325820 10326004 -192002343 + LTR33 LTR ERVL 94 278 -243 332 319 43 27 chr4 10326151 10326339 -192002008 + L2 LINE L2 3050 3240 -73 1241 196 63 14 chr4 10326498 10326920 -192001427 - MLT1C LTR MaLR -6 461 1 564 233 101 49 chr4 10326920 10327160 -192001187 - MIR SINE MIR -4 258 4 216 228 18 0 chr4 10327747 10327804 -192000543 + (TA)n Simple_repeat Simple_repeat 2 59 0 303 256 83 39 chr4 10327804 10327960 -192000387 - L1MCa LINE L1 -4350 2076 1914 263 134 73 12 chr4 10327968 10328050 -192000297 + (TA)n Simple_repeat Simple_repeat 1 87 0 2714 168 39 14 chr4 10328154 10328647 -191999700 - MLT1D LTR MaLR 0 505 1 379 336 23 8 chr4 10328658 10328786 -191999561 - MIR SINE MIR -113 149 20 186 347 0 0 chr4 10328967 10329042 -191999305 + L2 LINE L2 2979 3053 -219 237 271 98 33 chr4 10329311 10329433 -191998914 + L2 LINE L2 3136 3265 -7 291 222 136 25 chr4 10329904 10329985 -191998362 + MIR SINE MIR 63 144 -64 696 308 36 18 chr4 10330073 10330294 -191998053 - MIR SINE MIR 0 262 38 304 252 113 63 chr4 10330457 10330616 -191997731 + L1ME4a LINE L1 5827 5993 -128 451 282 8 17 chr4 10331276 10331393 -191996954 - MIR SINE MIR -120 142 27 35 0 0 0 chr4 10332546 10332581 -191995766 + AT_rich Low_complexity Low_complexity 1 35 0 1567 38 0 0 chr4 10332581 10332764 -191995583 - L1PA5 LINE L1 -9 6145 5963 244 150 25 0 chr4 10332787 10332827 -191995520 + MLT1J LTR MaLR 100 140 -371 242 241 13 13 chr4 10332920 10332999 -191995348 + MLT1J LTR MaLR 233 311 -200 579 298 56 0 chr4 10333008 10333186 -191995161 - MER91B DNA MER1_type 0 190 3 296 298 125 0 chr4 10333273 10333377 -191994970 + MER94 DNA DNA 12 128 -6 301 252 143 8 chr4 10333378 10333497 -191994850 + MLT1J LTR MaLR 376 510 -1 272 292 124 0 chr4 10333506 10333619 -191994728 + MIR SINE MIR 18 144 -64 2450 85 3 3 chr4 10334851 10335179 -191993168 + L1PA7 LINE L1 5825 6152 -2 425 356 71 8 chr4 10335602 10335841 -191992506 + MIR SINE MIR 9 262 0 3617 31 0 0 chr4 10335898 10336323 -191992024 + L1PA4 LINE L1 5731 6155 0 2268 149 42 114 chr4 10336731 10337275 -191991072 + MLT1D LTR MaLR 1 505 0 273 29 0 0 chr4 10337315 10337349 -191990998 + (TG)n Simple_repeat Simple_repeat 1 34 0 438 108 0 0 chr4 10337349 10337423 -191990924 + (GA)n Simple_repeat Simple_repeat 2 75 0 367 195 176 19 chr4 10337993 10338164 -191990183 - MIR SINE MIR -58 150 18 294 264 18 55 chr4 10339092 10339202 -191989145 - MIR SINE MIR -83 125 20 2228 103 7 0 chr4 10339260 10339551 -191988796 - AluSp SINE Alu -20 293 1 397 312 21 14 chr4 10339577 10339718 -191988629 - MIR SINE MIR -107 155 14 281 257 54 14 chr4 10340608 10340682 -191987665 - MIR SINE MIR -79 183 107 2259 115 7 0 chr4 10341341 10341646 -191986701 - AluSx SINE Alu -4 308 2 991 197 14 9 chr4 10341736 10341949 -191986398 + MER20 DNA MER1_type 1 214 -5 368 248 139 16 chr4 10342039 10342168 -191986179 + MIR SINE MIR 84 228 -34 314 274 42 21 chr4 10342520 10342615 -191985732 + MIR SINE MIR 28 124 -138 193 330 17 17 chr4 10342693 10342811 -191985536 - MIR SINE MIR -68 140 23 449 284 90 0 chr4 10343656 10343790 -191984557 - L3 LINE CR1 -28 1549 1404 439 281 16 23 chr4 10344210 10344338 -191984009 - MIR SINE MIR -108 154 28 535 269 67 7 chr4 10344703 10344852 -191983495 - MIR3 SINE MIR -22 186 29 209 271 105 60 chr4 10345059 10345192 -191983155 + L3 LINE CR1 1432 1570 -7 1236 63 0 1 chr4 10346035 10346217 -191982130 - L1PA10 LINE L1 -305 5863 5706 2251 72 17 0 chr4 10346223 10346507 -191981840 + L1PA10 LINE L1 5872 6168 0 244 277 102 17 chr4 10346686 10346863 -191981484 + LTR16A LTR ERVL 259 450 0 3139 106 81 50 chr4 10347264 10347847 -191980500 + LTR18B LTR ERVL 1 601 -13 298 250 70 47 chr4 10347854 10347982 -191980365 + L2 LINE L2 2935 3065 -207 188 270 14 27 chr4 10348079 10348153 -191980194 - L2 LINE L2 -24 3248 3176 300 275 135 35 chr4 10348373 10348573 -191979774 + LTR16C LTR ERVL 171 390 -101 304 275 58 0 chr4 10348648 10348768 -191979579 + LTR16C LTR ERVL 353 479 -12 481 324 131 9 chr4 10349462 10349684 -191978663 + MIR SINE MIR 14 262 0 437 343 81 12 chr4 10350387 10350559 -191977788 + MIR SINE MIR 55 238 -24 1377 207 106 71 chr4 10350664 10351048 -191977299 + MLT1C LTR MaLR 1 403 -64 2270 107 13 0 chr4 10351048 10351347 -191977000 - AluSq SINE Alu -10 303 1 1377 207 106 71 chr4 10351347 10351397 -191976950 + MLT1C LTR MaLR 403 450 -17 485 254 82 65 chr4 10351848 10352017 -191976330 + Charlie7 DNA MER1_type 238 414 -2198 697 186 0 64 chr4 10352017 10352157 -191976190 + FLAM_A SINE Alu 1 131 -2 485 254 82 65 chr4 10352157 10352219 -191976128 + Charlie7 DNA MER1_type 414 473 -2139 1034 238 83 79 chr4 10352271 10352480 -191975867 + Charlie7 DNA MER1_type 1674 1881 -731 2189 98 0 7 chr4 10352480 10352793 -191975554 + AluSx SINE Alu 1 311 0 1034 238 83 79 chr4 10352793 10353124 -191975223 + Charlie7 DNA MER1_type 1881 2217 -395 337 305 11 21 chr4 10353168 10353263 -191975084 - MIR SINE MIR -52 210 117 556 215 45 44 chr4 10353802 10354094 -191974253 - MLT1A2 LTR MaLR -3 371 1 241 242 32 0 chr4 10354147 10354209 -191974138 + CT-rich Low_complexity Low_complexity 3 66 0 487 339 92 0 chr4 10354722 10354961 -191973386 + L3 LINE CR1 1284 1544 -33 220 268 0 36 chr4 10355510 10355566 -191972781 - L2 LINE L2 -20 3293 3240 732 42 0 0 chr4 10355944 10356040 -191972307 + (TC)n Simple_repeat Simple_repeat 2 97 0 315 0 0 0 chr4 10356039 10356074 -191972273 + (TA)n Simple_repeat Simple_repeat 1 35 0 * 1297 266 54 36 chr4 10356374 10356765 -191971582 - L2 LINE L2 -1 3312 2915 189 232 101 0 chr4 10357373 10357442 -191970905 - MIR SINE MIR -92 116 41 275 240 150 30 chr4 10357599 10357699 -191970648 + MIR SINE MIR 76 148 -60 1769 174 70 88 chr4 10357725 10358237 -191970110 - MLT1D LTR MaLR -2 503 1 251 308 105 58 chr4 10358599 10358718 -191969629 - MIR3 SINE MIR -26 182 51 4868 95 6 0 chr4 10358718 10359373 -191968974 - L1PA8 LINE L1 0 6172 5514 251 308 105 58 chr4 10359373 10359425 -191968922 - MIR3 SINE MIR -157 51 3 257 301 24 0 chr4 10359569 10359652 -191968695 - MIR3 SINE MIR -24 184 100 737 185 7 7 chr4 10360169 10360320 -191968027 + MLT1A1 LTR MaLR 1 151 -214 280 336 19 9 chr4 10360384 10360491 -191967856 - MIR SINE MIR -68 140 33 2565 78 0 0 chr4 10362337 10362646 -191965701 - AluY SINE Alu -2 309 1 280 327 29 10 chr4 10362750 10362854 -191965493 + MIR SINE MIR 37 142 -66 247 188 42 0 chr4 10363113 10363161 -191965186 + MLT1A1 LTR MaLR 111 160 -389 696 277 32 11 chr4 10363580 10363768 -191964579 + MIR SINE MIR 25 216 -46 298 237 15 104 chr4 10364687 10364822 -191963525 + MIR SINE MIR 89 211 -51 510 267 112 6 chr4 10365014 10365175 -191963172 - MIR SINE MIR -48 214 37 228 306 25 25 chr4 10365405 10365526 -191962821 + MIR SINE MIR 106 226 -36 784 204 10 40 chr4 10367539 10367740 -191960607 + L1MB7 LINE L1 5964 6158 -26 601 256 39 55 chr4 10369240 10369494 -191958853 + MIR SINE MIR 13 262 0 251 359 50 11 chr4 10369495 10369676 -191958671 - MIR SINE MIR -48 214 27 180 283 0 0 chr4 10369905 10369951 -191958396 + L2 LINE L2 3268 3313 0 2045 230 46 53 chr4 10371550 10372120 -191956227 + MER74B LTR ERVL 57 622 0 693 250 17 11 chr4 10372312 10372488 -191955859 - MER5B DNA MER1_type -1 177 1 1118 272 40 13 chr4 10372564 10372943 -191955404 + LTR16A LTR ERVL 62 450 0 776 171 0 0 chr4 10372989 10373118 -191955229 + MER31A LTR ERV1 1 129 -356 222 254 0 0 chr4 10373307 10373362 -191954985 + L2 LINE L2 3218 3272 0 4114 149 40 7 chr4 10374560 10375376 -191952971 + L1MA4A LINE L1 5380 6283 -20 350 290 0 69 chr4 10375849 10375980 -191952367 + MIR SINE MIR 20 141 -121 1822 159 164 13 chr4 10376029 10376366 -191951981 + MSTA LTR MaLR 1 400 -28 1757 156 33 0 chr4 10376366 10376642 -191951705 - AluJb SINE Alu -15 297 13 1822 159 164 13 chr4 10376642 10376676 -191951671 + MSTA LTR MaLR 400 428 0 211 308 22 11 chr4 10376703 10376794 -191951553 + L3 LINE CR1 1480 1571 -6 404 260 49 73 chr4 10377234 10377438 -191950909 + MIR SINE MIR 28 226 -36 1813 176 16 16 chr4 10377446 10377621 -191950726 - AluJb SINE Alu -6 306 132 231 36 0 0 chr4 10377621 10377649 -191950698 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 2058 117 4 0 chr4 10377649 10377930 -191950417 - AluSp SINE Alu -31 282 1 1813 176 16 16 chr4 10377930 10378059 -191950288 - AluJb SINE Alu -178 134 1 4283 124 14 9 chr4 10378603 10379248 -191949099 + MER50 LTR ERV1 59 706 -28 236 197 0 121 chr4 10379299 10379365 -191948982 - MER5A DNA MER1_type -64 125 68 2327 99 0 3 chr4 10379367 10379671 -191948676 - AluSq SINE Alu 0 313 11 2257 100 19 13 chr4 10379704 10380013 -191948334 + AluY SINE Alu 1 311 0 206 292 14 28 chr4 10380052 10380124 -191948223 + L3 LINE CR1 1411 1481 -96 2764 239 104 63 chr4 10380789 10381818 -191946529 + HAL1 LINE L1 659 1760 -747 2508 73 6 12 chr4 10381818 10382161 -191946186 + L1PA7 LINE L1 5814 6154 0 2764 239 104 63 chr4 10382161 10382511 -191945836 + HAL1 LINE L1 1760 2094 -413 1309 105 16 174 chr4 10382607 10382912 -191945435 + AluSq SINE Alu 46 302 -11 470 256 48 35 chr4 10382955 10383182 -191945165 + HAL1 LINE L1 2276 2505 -2 666 277 13 22 chr4 10384461 10384685 -191943662 - MIR SINE MIR -37 225 4 6658 89 8 6 chr4 10384750 10386234 -191942113 + L1PA10 LINE L1 4672 6166 -2 341 337 52 23 chr4 10386366 10386538 -191941809 + L2 LINE L2 2896 3072 -200 1712 142 36 26 chr4 10386544 10386846 -191941501 - THE1B LTR MaLR -59 305 1 237 267 34 68 chr4 10387279 10387425 -191940922 - MER5A DNA MER1_type 0 189 49 360 212 8 102 chr4 10387712 10387830 -191940517 - MER5A DNA MER1_type -77 112 6 194 248 142 35 chr4 10388369 10388482 -191939865 + MIR SINE MIR 18 142 -66 583 259 33 58 chr4 10388534 10388777 -191939570 - MIR SINE MIR -4 258 22 256 302 81 23 chr4 10389289 10389461 -191938886 + L1ME4a LINE L1 3364 3545 -2601 230 154 0 0 chr4 10389522 10389561 -191938786 + MLT1D LTR MaLR 467 505 0 396 291 35 82 chr4 10389654 10389877 -191938470 + L1ME4a LINE L1 5522 5727 -394 1924 149 10 0 chr4 10389877 10390172 -191938175 + AluSx SINE Alu 1 298 -14 396 291 35 82 chr4 10390172 10390267 -191938080 + L1ME4a LINE L1 5727 5825 -296 231 222 0 67 chr4 10390565 10390655 -191937692 - L1M4 LINE L1 -1497 4649 4566 1166 166 81 110 chr4 10390864 10391618 -191936729 + LTR2B-int LTR ERV1 1546 3482 -3116 927 174 14 43 chr4 10391885 10392092 -191936255 + LTR2B-int LTR ERV1 3536 3736 -2862 1410 185 136 84 chr4 10392160 10393013 -191935334 + LTR2B-int LTR ERV1 2477 4646 -1685 1462 296 41 35 chr4 10393031 10393067 -191935280 + L1PBa LINE L1 3 37 -6826 2530 112 31 8 chr4 10393067 10393423 -191934924 - THE1B LTR MaLR 0 364 1 1462 296 41 35 chr4 10393423 10394062 -191934285 + L1PBa LINE L1 37 682 -6181 1888 241 45 46 chr4 10394090 10394211 -191934136 + LTR2B-int LTR ERV1 4245 4365 -506 3396 82 43 39 chr4 10394211 10394699 -191933648 + LTR2B LTR ERV1 1 490 0 1888 241 45 46 chr4 10394699 10395204 -191933143 + LTR2B-int LTR ERV1 4365 4870 -1 2582 154 15 42 chr4 10395204 10395659 -191932688 + MER65A LTR ERV1 1 443 -2 10751 183 42 7 chr4 10396076 10396962 -191931385 + L1PA16 LINE L1 2761 3615 -2551 3259 55 12 2 chr4 10396962 10397379 -191930968 + L1PA4 LINE L1 5735 6155 0 10751 183 42 7 chr4 10397379 10399767 -191928580 + L1PA16 LINE L1 3615 6156 -10 211 292 143 37 chr4 10400362 10400578 -191927769 + L2 LINE L2 2354 2592 -722 333 222 50 20 chr4 10400791 10400890 -191927457 + Charlie8 DNA MER1_type 82 183 -2234 300 53 0 0 chr4 10401034 10401072 -191927275 + (CCCCCT)n Simple_repeat Simple_repeat 1 38 0 276 288 0 0 chr4 10401376 10401442 -191926905 + L2 LINE L2 3248 3313 0 234 231 31 0 chr4 10401644 10401709 -191926638 - MIR SINE MIR -60 148 82 369 137 68 0 chr4 10402343 10402416 -191925931 + L1MB4 LINE L1 6103 6180 0 225 160 208 47 chr4 10402830 10402936 -191925411 + L2 LINE L2 3167 3289 -24 288 296 65 42 chr4 10403294 10403510 -191924837 + L2 LINE L2 2836 3056 -216 230 267 3 3 chr4 10403555 10403617 -191924730 - MIR SINE MIR -113 95 34 337 235 0 0 chr4 10404790 10404858 -191923489 + L2 LINE L2 3205 3272 0 245 241 86 52 chr4 10406756 10406872 -191921475 + L2 LINE L2 3194 3313 0 538 309 122 28 chr4 10406883 10407236 -191921111 + L2 LINE L2 2928 3313 0 1010 193 11 21 chr4 10408163 10408350 -191919997 + MER58A DNA MER1_type 37 221 -3 199 273 18 0 chr4 10408964 10409019 -191919328 - MIR SINE MIR -55 153 98 514 189 8 8 chr4 10409074 10409196 -191919151 + CT-rich Low_complexity Low_complexity 3 124 0 649 152 203 19 chr4 10409252 10409410 -191918937 - MLT1B LTR MaLR -203 187 1 223 159 0 0 chr4 10409991 10410035 -191918312 + L2 LINE L2 3269 3312 -1 579 66 0 0 chr4 10410658 10410734 -191917613 + (TTCC)n Simple_repeat Simple_repeat 1 76 0 1294 225 117 9 chr4 10411455 10411780 -191916567 - MLT1A1 LTR MaLR -3 362 3 2257 108 0 0 chr4 10411814 10412111 -191916236 + AluY SINE Alu 1 297 -14 249 303 67 0 chr4 10412828 10412917 -191915430 - LTR16A LTR ERVL -346 104 10 604 271 61 33 chr4 10414108 10414322 -191914025 + MIR SINE MIR 19 238 -24 1485 260 106 48 chr4 10414434 10414529 -191913818 - L2 LINE L2 -1048 2266 2178 2269 123 0 0 chr4 10414529 10414829 -191913518 + AluSx SINE Alu 1 300 -12 1485 260 106 48 chr4 10414829 10415490 -191912857 - L2 LINE L2 -1136 2178 1466 278 255 75 11 chr4 10415498 10415592 -191912755 + MIR SINE MIR 106 205 -57 278 271 79 50 chr4 10416096 10416236 -191912111 + MIR3 SINE MIR 58 201 -7 3838 209 23 62 chr4 10416349 10417357 -191910990 - LTR5 LTR ERVK 0 969 1 1264 151 11 1 chr4 10417592 10417964 -191910383 - MSTB LTR MaLR 0 426 1 538 260 24 8 chr4 10418361 10418507 -191909840 + MLT1H1 LTR MaLR 437 555 0 230 364 45 0 chr4 10418569 10418679 -191909668 - MIR3 SINE MIR -17 191 77 1090 242 28 3 chr4 10418681 10419037 -191909310 - L1 LINE L1 -2751 3395 3031 279 253 0 0 chr4 10420571 10420650 -191907697 + (ATGGTG)n Simple_repeat Simple_repeat 2 80 0 720 222 0 0 chr4 10420683 10420863 -191907484 + (TGG)n Simple_repeat Simple_repeat 1 180 0 725 212 6 0 chr4 10420887 10421066 -191907281 + (TGG)n Simple_repeat Simple_repeat 1 180 0 578 281 22 16 chr4 10421074 10421259 -191907088 - MIR SINE MIR -1 261 76 2399 87 7 0 chr4 10421577 10421875 -191906472 - AluSp SINE Alu -11 302 3 212 186 0 23 chr4 10422082 10422125 -191906222 + CT-rich Low_complexity Low_complexity 2 43 0 231 244 47 122 chr4 10422472 10422555 -191905792 - MIR SINE MIR 0 262 196 2153 106 7 0 chr4 10422555 10422865 -191905482 - AluSp SINE Alu 0 312 1 231 244 47 122 chr4 10422865 10422952 -191905395 - MIR SINE MIR -66 196 104 306 276 58 19 chr4 10423268 10423424 -191904923 + MLT1H LTR MaLR 347 508 -41 414 187 0 0 chr4 10423424 10423499 -191904848 - AluJ/FRAM SINE Alu -12 300 226 221 219 0 0 chr4 10423575 10423616 -191904731 - MIR SINE MIR -209 53 13 192 268 0 0 chr4 10423622 10423663 -191904684 + MIR SINE MIR 104 144 -64 213 65 0 0 chr4 10424119 10424150 -191904197 + (GA)n Simple_repeat Simple_repeat 1 31 0 428 301 182 7 chr4 10424162 10424305 -191904042 - MIR SINE MIR -75 187 20 604 282 253 2 chr4 10424517 10424987 -191903360 + L2 LINE L2 2707 3312 -1 502 219 18 0 chr4 10425798 10425912 -191902435 - LTR33A LTR ERVL -6 517 402 468 203 472 8 chr4 10425908 10426262 -191902085 - LTR50 LTR ERVL -277 518 1 * 186 133 0 0 chr4 10426283 10426313 -191902034 + (TCCC)n Simple_repeat Simple_repeat 4 33 0 302 274 0 0 chr4 10426320 10426393 -191901954 + HsTC2 DNA Tc2 1828 1900 0 311 311 66 19 chr4 10426540 10426646 -191901701 + MIR SINE MIR 34 144 -64 707 295 5 34 chr4 10426649 10426809 -191901538 - MIR SINE MIR -2 260 106 2300 123 0 0 chr4 10426809 10427117 -191901230 - AluSx SINE Alu -4 308 1 707 295 5 34 chr4 10427117 10427163 -191901184 - MIR SINE MIR -156 106 60 994 144 0 0 chr4 10427408 10427554 -191900793 + AluSg/x SINE Alu 166 311 -1 1433 291 35 22 chr4 10427554 10428015 -191900332 - L2 LINE L2 -412 2902 2436 290 330 193 5 chr4 10428464 10428682 -191899665 + L3 LINE CR1 1131 1389 -188 1581 273 111 6 chr4 10428718 10429267 -191899080 + L2 LINE L2 899 1505 -1809 808 307 175 15 chr4 10429272 10429900 -191898447 + L2 LINE L2 2577 3311 -2 325 405 76 0 chr4 10430018 10430176 -191898171 - L2 LINE L2 -1 3271 3102 775 255 113 20 chr4 10430637 10430990 -191897357 + LTR16A1 LTR ERVL 58 443 -14 329 167 56 22 chr4 10431179 10431269 -191897078 + MLT1K LTR MaLR 338 430 -158 1544 179 73 20 chr4 10431289 10431630 -191896717 + MLT1B LTR MaLR 32 390 0 235 281 237 7 chr4 10431799 10431934 -191896413 + MLT1K LTR MaLR 10 175 -413 1122 175 53 10 chr4 10432018 10432224 -191896123 - MER20 DNA MER1_type 0 219 5 627 217 111 32 chr4 10432309 10432526 -191895821 + MLT1K LTR MaLR 338 571 -17 202 316 38 25 chr4 10432562 10432641 -191895706 - MIR SINE MIR -70 192 113 386 237 41 10 chr4 10432754 10432851 -191895496 + L2 LINE L2 3173 3272 0 224 343 127 30 chr4 10432933 10433074 -191895273 + L3 LINE CR1 1293 1454 -123 243 103 0 0 chr4 10433074 10433113 -191895234 + (ATG)n Simple_repeat Simple_repeat 3 41 0 224 343 127 30 chr4 10433113 10433137 -191895210 + L3 LINE CR1 1454 1474 -103 364 329 105 0 chr4 10433160 10433312 -191895035 - MIR SINE MIR -49 213 46 189 325 0 26 chr4 10433332 10433409 -191894938 + L3 LINE CR1 1400 1474 -103 198 191 0 0 chr4 10434238 10434280 -191894067 + T-rich Low_complexity Low_complexity 1 42 0 272 289 67 81 chr4 10434305 10434465 -191893882 - MIR SINE MIR -61 147 4 203 369 10 10 chr4 10434758 10434861 -191893486 + MIR SINE MIR 38 140 -68 588 241 25 44 chr4 10435435 10435593 -191892754 - MIR SINE MIR -74 188 34 400 278 18 41 chr4 10435847 10436016 -191892331 + L1MC4a LINE L1 5697 5861 -1947 486 292 73 36 chr4 10436027 10436356 -191891991 + LTR33 LTR ERVL 10 350 -171 354 224 56 28 chr4 10436795 10436902 -191891445 - L1M4 LINE L1 -968 5178 5069 359 252 165 0 chr4 10436935 10437038 -191891309 - MIR SINE MIR -62 146 27 2135 129 0 0 chr4 10437119 10437406 -191890941 + AluSx SINE Alu 5 291 -21 796 230 79 3 chr4 10437455 10437797 -191890550 + L1ME3A LINE L1 5101 5462 -712 192 241 37 19 chr4 10437825 10437879 -191890468 + MER5A DNA MER1_type 132 186 -3 395 267 205 2 chr4 10437982 10438134 -191890213 + MIR SINE MIR 17 192 -37 783 315 57 34 chr4 10438203 10438647 -191889700 + L1ME3A LINE L1 5497 5951 -219 1160 164 0 60 chr4 10438787 10439019 -191889328 - AluJo SINE Alu -54 258 41 1063 296 70 52 chr4 10439188 10439760 -191888587 - L2 LINE L2 -337 2977 2396 212 293 253 0 chr4 10439945 10440044 -191888303 - L2 LINE L2 -4 3268 3145 487 325 105 34 chr4 10440056 10440474 -191887873 - MLT1L LTR MaLR 0 615 168 340 269 22 15 chr4 10440494 10440628 -191887719 + L2 LINE L2 2370 2504 -810 897 167 37 60 chr4 10440644 10440860 -191887487 + MLT1C LTR MaLR 1 211 -256 * 1829 181 5 73 chr4 10440856 10441264 -191887083 + MLT1B LTR MaLR 11 390 0 185 197 30 76 chr4 10441283 10441349 -191886998 + L2 LINE L2 2553 2615 -699 710 268 97 64 chr4 10441483 10441968 -191886379 + LTR67 LTR ERVL 3 503 -54 245 263 202 0 chr4 10442013 10442112 -191886235 - MIR SINE MIR -59 203 85 2199 126 0 0 chr4 10442268 10442570 -191885777 + AluSx SINE Alu 1 302 -10 218 304 174 31 chr4 10442572 10442733 -191885614 - L2 LINE L2 -10 3262 3079 494 330 60 14 chr4 10443549 10443764 -191884583 - MIR SINE MIR -26 236 12 948 293 78 5 chr4 10444022 10444404 -191883943 + MLT1J2 LTR MaLR 41 450 0 224 394 0 0 chr4 10444796 10444867 -191883480 - L2 LINE L2 -94 3178 3108 294 327 72 0 chr4 10445133 10445286 -191883061 - L2 LINE L2 -557 2757 2594 192 272 103 87 chr4 10445384 10445568 -191882779 + MIR3 SINE MIR 10 196 -12 * 721 242 101 0 chr4 10445540 10445718 -191882629 + MIR SINE MIR 53 248 -14 2657 192 18 38 chr4 10446327 10446900 -191881447 + MER68 LTR ERV1 1 561 -1 301 308 77 34 chr4 10447543 10447660 -191880687 + MIR SINE MIR 128 249 -13 393 330 100 10 chr4 10448137 10448337 -191880010 + L1ME4a LINE L1 5700 5917 -204 313 290 136 56 chr4 10448367 10448529 -191879818 + MIR SINE MIR 18 192 -70 1147 252 101 39 chr4 10449725 10450240 -191878107 + MER21B LTR ERV1 133 679 -184 195 239 43 0 chr4 10450275 10450321 -191878026 - L2 LINE L2 -34 3238 3191 213 238 0 0 chr4 10451364 10451406 -191876941 + (TAGA)n Simple_repeat Simple_repeat 1 42 0 815 236 32 18 chr4 10451650 10451870 -191876477 + MER58A DNA MER1_type 1 223 -1 1153 270 104 40 chr4 10452093 10452740 -191875607 - L2 LINE L2 0 3313 2615 255 320 39 0 chr4 10453197 10453275 -191875072 + MIR SINE MIR 110 190 -72 205 335 77 29 chr4 10454322 10454492 -191873855 + L2 LINE L2 3034 3211 -61 583 255 28 31 chr4 10455002 10455166 -191873181 + MIR SINE MIR 3 164 -61 989 213 84 17 chr4 10455230 10455526 -191872821 + MLT1A2 LTR MaLR 39 354 -20 691 246 54 35 chr4 10455967 10456170 -191872177 + MIR SINE MIR 35 241 -21 268 99 70 0 chr4 10456432 10456489 -191871858 + MER4D LTR ERV1 555 829 -41 334 262 47 9 chr4 10456734 10456841 -191871506 + L2 LINE L2 2965 3075 -197 2007 134 13 19 chr4 10457960 10458244 -191870103 + AluSx SINE Alu 1 284 -28 396 0 0 0 chr4 10458244 10458288 -191870059 + (TAGA)n Simple_repeat Simple_repeat 3 46 0 2007 134 13 19 chr4 10458288 10458316 -191870031 + AluSx SINE Alu 284 311 -1 206 297 249 16 chr4 10459136 10459321 -191869026 - MIR SINE MIR -29 233 6 318 26 0 0 chr4 10459732 10459771 -191868576 + (TG)n Simple_repeat Simple_repeat 2 40 0 374 276 33 30 chr4 10459946 10460112 -191868235 + MIR SINE MIR 19 183 -63 2126 122 10 0 chr4 10461540 10461836 -191866511 - AluSx SINE Alu -13 299 1 301 303 14 15 chr4 10461836 10461966 -191866381 + MIR SINE MIR 64 189 -65 197 116 0 93 chr4 10463111 10463154 -191865193 + MIR SINE MIR 108 146 -116 2147 149 19 8 chr4 10463967 10464342 -191864005 + MLT1B LTR MaLR 5 383 -7 370 279 37 63 chr4 10464954 10465144 -191863203 + MIR SINE MIR 75 259 -3 579 274 139 58 chr4 10465940 10466062 -191862285 + L2 LINE L2 1602 1713 -1601 3280 185 19 36 chr4 10466062 10466459 -191861888 + L1MB5 LINE L1 5499 5880 -294 2352 88 3 0 chr4 10466459 10466763 -191861584 + AluSq SINE Alu 1 296 -17 3280 185 19 36 chr4 10466763 10467053 -191861294 + L1MB5 LINE L1 5880 6174 0 579 274 139 58 chr4 10467053 10467240 -191861107 + L2 LINE L2 1713 1936 -1378 1071 217 104 4 chr4 10467415 10467707 -191860640 - L1MA4 LINE L1 -1 6299 5979 440 321 55 14 chr4 10468105 10468323 -191860024 + MIR SINE MIR 20 246 -16 270 308 33 11 chr4 10468911 10469002 -191859345 - MER5A DNA MER1_type -42 147 55 1856 97 3 74 chr4 10469237 10469632 -191858715 - AluSq SINE Alu 0 313 2 1364 159 64 0 chr4 10469786 10470050 -191858297 + L1MA7 LINE L1 6010 6290 -1 1359 158 7 62 chr4 10470059 10470350 -191857997 + L1MC1 LINE L1 6039 6313 -20 211 349 45 8 chr4 10470486 10470618 -191857729 - MIR SINE MIR -15 247 111 290 277 194 55 chr4 10471704 10472069 -191856278 - L2 LINE L2 -1 3312 2897 191 356 78 0 chr4 10472571 10472686 -191855661 + MIR SINE MIR 85 208 -54 589 295 46 9 chr4 10474252 10474469 -191853878 + MIR SINE MIR 21 245 -17 270 276 0 81 chr4 10474475 10474598 -191853749 - MIR SINE MIR -76 132 19 2492 185 32 32 chr4 10475255 10475463 -191852884 + MLT2B3 LTR ERVL 1 208 -346 202 29 57 0 chr4 10475463 10475498 -191852849 + (TTTTG)n Simple_repeat Simple_repeat 3 39 0 2492 185 32 32 chr4 10475498 10475791 -191852556 + MLT2B3 LTR ERVL 207 502 -52 225 0 0 0 chr4 10475791 10475816 -191852531 + (TCCA)n Simple_repeat Simple_repeat 3 27 0 354 341 24 24 chr4 10475925 10476095 -191852252 + MIR SINE MIR 53 222 -40 424 297 118 11 chr4 10476232 10476495 -191851852 - L1ME4a LINE L1 -225 5896 5606 1171 208 140 39 chr4 10476790 10477098 -191851249 - L1MB7 LINE L1 -9 6175 5837 589 222 17 39 chr4 10477184 10477364 -191850983 + MER96B DNA MER1_type? 1 176 -241 1915 122 3 11 chr4 10477364 10477680 -191850667 + AluSx SINE Alu 1 314 0 2188 104 3 3 chr4 10477922 10478231 -191850116 + AluSx SINE Alu 1 309 -3 663 270 38 5 chr4 10478588 10478799 -191849548 - MER58A DNA MER1_type -3 221 4 427 270 107 83 chr4 10479105 10479527 -191848820 + L2 LINE L2 2322 2753 -561 180 176 0 0 chr4 10479560 10479594 -191848753 + GA-rich Low_complexity Low_complexity 3 36 0 298 305 13 93 chr4 10479728 10479879 -191848468 + L2 LINE L2 2905 3043 -229 312 300 204 5 chr4 10480182 10480358 -191847989 - MIR SINE MIR -49 213 1 2208 81 13 7 chr4 10481714 10482021 -191846326 + AluY SINE Alu 1 309 -2 8937 202 27 16 chr4 10482021 10484744 -191843603 + L1MB2 LINE L1 3368 6131 -40 1968 101 0 7 chr4 10484744 10485097 -191843250 - AluSx SINE Alu 0 351 1 8937 202 27 16 chr4 10485097 10485138 -191843209 + L1MB2 LINE L1 6131 6170 -1 1748 133 87 70 chr4 10485610 10485730 -191842617 - THE1C LTR MaLR 0 375 258 2251 109 0 0 chr4 10485730 10486042 -191842305 - AluSx SINE Alu 0 312 1 1748 133 87 70 chr4 10486042 10486290 -191842057 - THE1C LTR MaLR -117 258 1 1669 183 85 40 chr4 10486322 10486769 -191841578 + MLT1C LTR MaLR 1 467 0 1575 239 22 71 chr4 10487035 10487582 -191840765 + MLT2B1 LTR ERVL 1 520 0 512 271 53 16 chr4 10487762 10487950 -191840397 + LTR16A1 LTR ERVL 45 239 -218 890 339 37 3 chr4 10487986 10488364 -191839983 + ERVL LTR ERVL 1908 2298 -3466 725 332 35 12 chr4 10488410 10488729 -191839618 + ERVL LTR ERVL 2266 2591 -2405 257 296 133 56 chr4 10488753 10489145 -191839202 + L2 LINE L2 2244 2665 -649 355 188 129 24 chr4 10489204 10489289 -191839058 + L2 LINE L2 3200 3293 -20 301 295 16 33 chr4 10489663 10489785 -191838562 - L3 LINE CR1 -718 859 740 536 292 81 0 chr4 10489922 10490083 -191838264 + MIR SINE MIR 68 241 -21 4045 201 41 15 chr4 10490106 10490908 -191837439 - MER21B LTR ERV1 -20 843 21 265 275 66 22 chr4 10490910 10491001 -191837346 - MER21B LTR ERV1 -757 106 12 363 326 17 28 chr4 10491215 10491393 -191836954 - L3 LINE CR1 -214 1363 1188 630 276 131 75 chr4 10491402 10491705 -191836642 + L2 LINE L2 2433 2717 -596 2140 122 0 0 chr4 10491705 10492016 -191836331 + AluSx SINE Alu 1 311 -1 630 276 131 75 chr4 10492016 10492459 -191835888 + L2 LINE L2 2717 3219 -94 359 236 0 46 chr4 10492549 10492676 -191835671 + MLT1D LTR MaLR 19 91 -414 1964 70 0 12 chr4 10492676 10492935 -191835412 + AluY SINE Alu 32 287 -24 1327 174 53 91 chr4 10492959 10493041 -191835306 + MLT1D LTR MaLR 120 204 -301 1475 153 53 7 chr4 10493041 10493322 -191835025 + AluJb SINE Alu 11 304 -8 1327 174 53 91 chr4 10493322 10493635 -191834712 + MLT1D LTR MaLR 204 500 -5 244 278 56 0 chr4 10494307 10494379 -191833968 - HsTC2 DNA Tc2 -1810 88 13 902 143 0 0 chr4 10494771 10494904 -191833443 + FLAM_C SINE Alu 1 133 -10 1160 152 35 0 chr4 10495021 10495219 -191833128 - MER20 DNA MER1_type -1 218 14 2587 94 14 0 chr4 10495348 10495698 -191832649 + THE1A LTR MaLR 1 355 0 1607 189 61 66 chr4 10495762 10495790 -191832557 - MLT2D LTR ERVL -8 406 379 231 36 0 0 chr4 10495790 10495818 -191832529 + (TG)n Simple_repeat Simple_repeat 2 29 0 1607 189 61 66 chr4 10495818 10495854 -191832493 - MLT2D LTR ERVL -35 379 344 1629 182 0 7 chr4 10495854 10496150 -191832197 + AluJb SINE Alu 1 294 -18 1607 189 61 66 chr4 10496150 10496492 -191831855 - MLT2D LTR ERVL -70 344 1 367 269 64 35 chr4 10496619 10496790 -191831557 - MER5B DNA MER1_type -2 176 1 566 253 89 0 chr4 10497116 10497262 -191831085 - MIR SINE MIR -16 246 88 539 332 67 39 chr4 10497326 10497757 -191830590 + L1ME LINE L1 4153 4595 -1551 1426 213 138 79 chr4 10498134 10498283 -191830064 + MLT1E LTR MaLR 56 195 -398 1935 116 20 7 chr4 10498283 10498577 -191829770 + AluSx SINE Alu 1 298 -14 1426 213 138 79 chr4 10498577 10498933 -191829414 + MLT1E LTR MaLR 195 591 -2 271 283 26 71 chr4 10498936 10499049 -191829298 - L1ME3A LINE L1 -100 6070 5963 195 100 0 0 chr4 10499365 10499395 -191828952 + (CA)n Simple_repeat Simple_repeat 1 30 0 2213 121 0 0 chr4 10499777 10500090 -191828257 + AluSq SINE Alu 1 313 0 333 320 93 16 chr4 10500171 10500365 -191827982 + L1ME LINE L1 5495 5703 -418 243 238 24 48 chr4 10500580 10500664 -191827683 + MIR SINE MIR 51 132 -130 2170 222 55 18 chr4 10501265 10501810 -191826537 - L1ME3 LINE L1 -20 6142 5578 2144 138 49 42 chr4 10501840 10502168 -191826179 - L1MA5 LINE L1 -2 6298 5965 2081 120 10 0 chr4 10502168 10502476 -191825871 - AluY SINE Alu 0 311 1 2144 138 49 42 chr4 10502476 10502575 -191825772 - L1MA5 LINE L1 -335 5965 5868 1401 142 32 24 chr4 10502575 10502822 -191825525 + L1MA5 LINE L1 5619 5867 -433 982 168 0 0 chr4 10503940 10504101 -191824246 + FRAM SINE Alu 2 162 -14 228 265 10 82 chr4 10504120 10504218 -191824129 + L2 LINE L2 3220 3310 -3 1062 187 111 29 chr4 10504218 10504278 -191824069 + MER34 LTR ERV1 27 81 -461 2250 78 0 41 chr4 10504278 10504598 -191823749 + AluY SINE Alu 1 307 -4 1062 187 111 29 chr4 10504598 10504988 -191823359 + MER34 LTR ERV1 81 542 0 864 144 46 40 chr4 10505161 10505334 -191823013 + MER20 DNA MER1_type 44 217 -2 2024 122 6 10 chr4 10505444 10505756 -191822591 + AluSx SINE Alu 1 311 -1 862 170 0 0 chr4 10505788 10505929 -191822418 + FRAM SINE Alu 1 140 -36 269 225 25 12 chr4 10506238 10506318 -191822029 + GA-rich Low_complexity Low_complexity 2 82 0 32 43 0 0 chr4 10507800 10507846 -191820501 + AT_rich Low_complexity Low_complexity 1 46 0 259 232 73 24 chr4 10508370 10508452 -191819895 + L2 LINE L2 3030 3115 -157 233 326 43 0 chr4 10508587 10508679 -191819668 - MIR SINE MIR -1 261 166 1143 118 16 11 chr4 10508680 10508866 -191819481 + AluSc SINE Alu 111 297 -12 459 286 56 5 chr4 10509250 10509446 -191818901 + LTR33 LTR ERVL 297 502 -19 196 286 0 0 chr4 10509601 10509643 -191818704 - MIR SINE MIR -150 112 71 263 268 61 24 chr4 10509643 10509725 -191818622 + MIR SINE MIR 120 204 -58 579 146 133 26 chr4 10509745 10509896 -191818451 + MER53 DNA DNA 13 179 -10 575 167 108 25 chr4 10509899 10510019 -191818328 - FLAM_A SINE Alu -6 136 7 219 361 17 25 chr4 10510228 10510347 -191818000 - MIR SINE MIR -71 137 20 1684 226 179 16 chr4 10511152 10511799 -191816548 + Charlie1 DNA MER1_type 1978 2730 -31 203 152 0 0 chr4 10512070 10512103 -191816244 + (CA)n Simple_repeat Simple_repeat 1 33 0 352 326 34 7 chr4 10513710 10513857 -191814490 - MIR3 SINE MIR -15 193 43 420 167 176 0 chr4 10515375 10515477 -191812870 - MER20 DNA MER1_type -34 185 66 429 195 150 0 chr4 10516559 10516672 -191811675 + Charlie5 DNA MER1_type 2476 2605 -7 212 235 20 0 chr4 10520517 10520568 -191807779 + MIR SINE MIR 93 144 -64 289 198 25 12 chr4 10520633 10520714 -191807633 - MIR SINE MIR -129 133 52 345 253 247 29 chr4 10520789 10520963 -191807384 + MIR SINE MIR 46 257 -5 215 200 0 0 chr4 10521351 10521391 -191806956 + G-rich Low_complexity Low_complexity 1 40 0 239 265 88 10 chr4 10522327 10522429 -191805918 - MIR SINE MIR -44 218 109 294 357 0 0 chr4 10523629 10523727 -191804620 + MIR SINE MIR 51 148 -60 257 292 56 11 chr4 10525413 10525502 -191802845 + MER5B DNA MER1_type 86 178 0 2043 100 7 0 chr4 10528832 10529103 -191799244 - AluY SINE Alu -38 273 1 1070 225 175 22 chr4 10529540 10529945 -191798402 + MLT1C LTR MaLR 1 467 0 393 324 95 0 chr4 10539917 10540127 -191788220 + MIR SINE MIR 13 242 -20 276 268 111 3 chr4 10541917 10542015 -191786332 - MIR SINE MIR -62 146 57 937 201 186 52 chr4 10542015 10542364 -191785983 + MSTD LTR MaLR 1 396 0 276 268 111 3 chr4 10542364 10542407 -191785940 - MIR SINE MIR -151 57 20 216 97 0 0 chr4 10542634 10542665 -191785682 + (TGAA)n Simple_repeat Simple_repeat 4 34 0 513 32 0 0 chr4 10542958 10543021 -191785326 + (CA)n Simple_repeat Simple_repeat 1 63 0 452 105 232 17 chr4 10543203 10543324 -191785023 + MER30 DNA MER1_type 1 154 -76 1902 32 9 0 chr4 10543498 10543719 -191784628 - AluY SINE Alu -88 223 1 279 45 0 0 chr4 10545176 10545220 -191783127 - AluY SINE Alu 0 300 257 1940 54 0 0 chr4 10545220 10545441 -191782906 - AluY SINE Alu -90 221 1 381 58 0 0 chr4 10545478 10545530 -191782817 + (CA)n Simple_repeat Simple_repeat 2 53 0 323 290 65 16 chr4 10546994 10547118 -191781229 + MIR SINE MIR 23 152 -110 385 148 10 138 chr4 10547555 10547751 -191780596 - AluSp SINE Alu -12 291 121 412 252 122 63 chr4 10548638 10548860 -191779487 - MIR SINE MIR 0 262 28 30 0 0 0 chr4 10549974 10550004 -191778343 + AT_rich Low_complexity Low_complexity 1 30 0 302 315 36 30 chr4 10550135 10550300 -191778047 + MIR SINE MIR 97 262 0 333 318 9 37 chr4 10553426 10553533 -191774814 - L1ME LINE L1 -425 5696 5593 4265 225 53 35 chr4 10556822 10558375 -191769972 + L1 LINE L1 2273 3853 -2293 21 36 0 0 chr4 10558645 10558673 -191769674 + AT_rich Low_complexity Low_complexity 1 28 0 404 205 0 13 chr4 10558958 10559036 -191769311 + L1M3e LINE L1 189 265 -6765 1906 235 129 50 chr4 10559041 10560327 -191768020 + L1M3e LINE L1 1110 2490 -4547 21 0 0 0 chr4 10561239 10561260 -191767087 + AT_rich Low_complexity Low_complexity 1 21 0 26 50 0 0 chr4 10561428 10561468 -191766879 + AT_rich Low_complexity Low_complexity 1 40 0 1286 222 136 81 chr4 10561877 10562026 -191766321 + MLT1E LTR MaLR 56 195 -398 2069 119 20 7 chr4 10562026 10562320 -191766027 + AluSx SINE Alu 1 298 -14 1286 222 136 81 chr4 10562320 10562678 -191765669 + MLT1E LTR MaLR 195 591 -2 23 0 0 0 chr4 10562822 10562845 -191765502 + AT_rich Low_complexity Low_complexity 1 23 0 31 0 0 0 chr4 10563069 10563100 -191765247 + AT_rich Low_complexity Low_complexity 1 31 0 668 178 46 46 chr4 10564051 10564225 -191764122 + MER20 DNA MER1_type 44 217 -2 1120 115 14 0 chr4 10564335 10564483 -191763864 + AluSq/x SINE Alu 1 150 -163 2552 241 58 22 chr4 10566173 10566959 -191761388 + L1ME1 LINE L1 5348 6162 -4 208 310 62 18 chr4 10569084 10569197 -191759150 + L2 LINE L2 2994 3111 -161 345 263 72 40 chr4 10569440 10569592 -191758755 - MIR SINE MIR -70 192 36 240 205 55 142 chr4 10570838 10570965 -191757382 + L2 LINE L2 2937 3052 -220 241 226 24 119 chr4 10571171 10571255 -191757092 - MER20 DNA MER1_type -143 76 1 248 207 52 0 chr4 10572421 10572479 -191755868 - MER20 DNA MER1_type -17 202 142 884 298 127 36 chr4 10573108 10573402 -191754945 - L2 LINE L2 -5 3308 3042 1838 157 10 19 chr4 10573402 10573714 -191754633 + AluSx SINE Alu 1 309 -3 884 298 127 36 chr4 10573714 10574263 -191754084 - L2 LINE L2 -271 3042 2316 219 184 0 0 chr4 10575279 10575317 -191753030 - MIR SINE MIR -60 148 111 263 229 27 64 chr4 10575968 10576057 -191752290 - MIR SINE MIR -41 167 80 599 111 0 0 chr4 10576123 10576213 -191752134 - 5S rRNA rRNA -31 90 1 42 100 0 0 chr4 10576833 10576973 -191751374 + GC_rich Low_complexity Low_complexity 1 140 0 23 0 0 0 chr4 10577312 10577335 -191751012 + GC_rich Low_complexity Low_complexity 1 23 0 494 185 127 25 chr4 10580108 10580265 -191748082 - LTR32 LTR ERVL 0 471 299 1106 214 139 8 chr4 10584261 10584621 -191743726 - MLT1C LTR MaLR 0 467 61 7154 74 46 2 chr4 10587705 10588633 -191739714 - LTR5 LTR ERVK 0 969 1 248 132 0 0 chr4 10589404 10589442 -191738905 + MLT2A1 LTR ERVL 342 379 -65 * 1735 93 81 51 chr4 10589438 10589771 -191738576 - MLT2A1 LTR ERVL -101 343 1 345 211 40 0 chr4 10597884 10597960 -191730387 - L1MCa LINE L1 -5051 1513 1435 269 194 222 28 chr4 10598047 10598155 -191730192 - L1MCa LINE L1 -5597 448 320 446 244 224 10 chr4 10598506 10598998 -191729349 - L1MB3 LINE L1 -8 6175 5583 2000 121 104 27 chr4 10602918 10603330 -191725017 - MLT2A1 LTR ERVL 0 444 1 1249 204 67 30 chr4 10606699 10606968 -191721379 + AluSx SINE Alu 5 283 -29 629 227 89 39 chr4 10608573 10608776 -191719571 - MER20 DNA MER1_type 0 219 7 1631 184 117 34 chr4 10629787 10630259 -191698088 - MER9 LTR ERVK 0 511 1 1463 217 93 15 chr4 10630262 10630837 -191697510 - HERVK9 LTR ERVK -3 7352 5635 339 239 100 80 chr4 10630838 10631089 -191697258 - HERVK9 LTR ERVK -686 4576 4321 12268 165 55 15 chr4 10631180 10633873 -191694474 - HERVK9 LTR ERVK -281 5635 3042 9648 163 47 17 chr4 10633871 10635836 -191692511 - HERVK9 LTR ERVK -4125 1791 1 * 1355 209 123 36 chr4 10635836 10636306 -191692041 - MER9 LTR ERVK 0 511 1 354 256 131 50 chr4 10638481 10638641 -191689706 - MER20 DNA MER1_type -42 177 5 274 310 60 25 chr4 10640008 10640208 -191688139 - ERVL LTR ERVL -2988 2776 2570 180 0 0 0 chr4 10642217 10642237 -191686110 + (T)n Simple_repeat Simple_repeat 1 20 0 1868 216 90 5 chr4 10644231 10644675 -191683672 - L1PA15 LINE L1 -16 6149 5668 2116 185 40 26 chr4 10644676 10645130 -191683217 - MER66B LTR ERV1 0 486 27 988 149 113 32 chr4 10645136 10645357 -191682990 - L1PA15 LINE L1 -494 5671 5433 489 262 143 6 chr4 10649685 10649853 -191678494 - MER20 DNA MER1_type -7 212 22 571 301 108 34 chr4 10650188 10650781 -191677566 - ERVL LTR ERVL -1708 3946 3336 433 276 140 37 chr4 10651107 10651549 -191676798 - ERVL LTR ERVL -2577 2908 2409 189 0 0 0 chr4 10651597 10651618 -191676729 + (TA)n Simple_repeat Simple_repeat 1 21 0 491 285 108 24 chr4 10656218 10656506 -191671841 - LTR16A LTR ERVL -5 445 134 317 89 0 0 chr4 10658159 10658204 -191670143 - L1P4 LINE L1 -408 5760 5716 2491 148 81 53 chr4 10658218 10658723 -191669624 - LTR25 LTR ERV1 0 794 276 6384 77 45 4 chr4 10658723 10659744 -191668603 - L1PA7 LINE L1 -23 6131 5076 1379 157 86 8 chr4 10659744 10659978 -191668369 - LTR25 LTR ERV1 -506 288 29 213 39 0 0 chr4 10659978 10660004 -191668343 + (TTCCC)n Simple_repeat Simple_repeat 3 28 0 1379 157 86 8 chr4 10660004 10660036 -191668311 - LTR25 LTR ERV1 -765 29 1 226 171 0 0 chr4 10660038 10660073 -191668274 - L1P4 LINE L1 -463 5702 5668 972 229 366 6 chr4 10660074 10660424 -191667923 - MER66A LTR ERV1 0 478 3 947 194 107 0 chr4 10660425 10660641 -191667706 - L1P4 LINE L1 -494 5671 5433 354 235 168 7 chr4 10664399 10664548 -191663799 - MER20 DNA MER1_type -37 182 10 291 295 77 32 chr4 10668492 10668658 -191659689 - ERVL LTR ERVL -2236 3418 3265 221 0 35 0 chr4 10672956 10672985 -191655362 + (TA)n Simple_repeat Simple_repeat 2 31 0 289 335 51 23 chr4 10674522 10674698 -191653649 - LTR16A LTR ERVL -34 416 236 3819 94 69 19 chr4 10675038 10676017 -191652330 - MER11A LTR ERVK -4 1262 1 527 244 85 30 chr4 10679118 10679319 -191649028 - ERVL LTR ERVL -892 4638 4427 416 304 45 93 chr4 10679318 10679630 -191648717 - ERVL LTR ERVL -1240 4290 3994 * 385 286 76 8 chr4 10679635 10679754 -191648593 - ERVL LTR ERVL -1648 3882 3756 359 277 42 38 chr4 10679805 10680015 -191648332 - ERVL LTR ERVL -1338 3428 1490 633 260 108 50 chr4 10681731 10682073 -191646274 - MLT1A1 LTR MaLR -3 362 1 680 243 112 29 chr4 10683026 10683302 -191645045 - LTR16A LTR ERVL -51 399 101 583 353 78 20 chr4 10684193 10684983 -191643364 - ERVL LTR ERVL -1167 4597 3423 391 319 86 5 chr4 10685104 10685314 -191643033 - ERVL LTR ERVL -2211 3553 3327 536 317 91 5 chr4 10685461 10685682 -191642665 - LTR16A LTR ERVL -159 291 52 251 322 16 16 chr4 10689408 10689529 -191638818 - L2 LINE L2 -1216 2098 1978 1038 296 98 10 chr4 10689975 10690384 -191637963 + LTR16A LTR ERVL 1 445 -5 294 216 0 0 chr4 10690880 10690931 -191637416 + ERVL LTR ERVL 3406 3456 -2308 258 296 80 0 chr4 10690925 10691013 -191637334 - ERVL LTR ERVL -2350 3414 3320 * 374 307 83 21 chr4 10691107 10691299 -191637048 - ERVL LTR ERVL -2582 3182 2979 373 267 97 28 chr4 10691434 10691610 -191636737 - ERVL LTR ERVL -2957 2807 2620 423 112 209 45 chr4 10691923 10692057 -191636290 - L1MB1 LINE L1 0 6168 6013 817 214 128 95 chr4 10693140 10693477 -191634870 - MLT1A1 LTR MaLR -17 348 1 988 237 169 11 chr4 10693714 10693992 -191634355 - MLT2B2 LTR ERVL -2 513 192 2371 240 186 44 chr4 10694815 10696049 -191632298 - L1M4 LINE L1 -5120 1422 14 1621 141 101 26 chr4 10697651 10698156 -191630191 - MLT2A2 LTR ERVL 0 554 1 231 287 0 23 chr4 10699619 10699706 -191628641 - MLT1E2 LTR MaLR -537 89 5 242 283 40 50 chr4 10700369 10700468 -191627879 + MSTD LTR MaLR 204 301 -95 1605 199 99 67 chr4 10700985 10701732 -191626615 - MER4C LTR ERV1 0 667 34 340 209 0 47 chr4 10702039 10702125 -191626222 - MER4C LTR ERV1 -383 82 1 2942 124 44 0 chr4 10702271 10702705 -191625642 - MLT2A2 LTR ERVL 0 453 1 365 295 122 38 chr4 10703583 10704034 -191624313 - MLT1D LTR MaLR -10 495 7 2874 77 64 5 chr4 10705329 10705721 -191622626 - LTR8 LTR ERV1 -3 688 274 539 96 72 0 chr4 10705720 10705803 -191622544 - LTR8 LTR ERV1 -602 89 1 * 649 252 81 14 chr4 10706035 10706245 -191622102 - PABL_B LTR ERV1 0 667 444 225 301 69 94 chr4 10706513 10706716 -191621631 - PABL_B LTR ERV1 -469 198 1 1255 249 129 12 chr4 10706927 10707353 -191620994 - MER31A LTR ERV1 -9 476 1 1938 178 97 7 chr4 10707423 10707844 -191620503 - LOR1b LTR ERV1 0 461 3 6345 65 50 0 chr4 10708545 10709619 -191618728 - L1PA7 LINE L1 -1 6153 5042 225 88 0 0 chr4 10709619 10709653 -191618694 + L1PA7 LINE L1 4976 5009 -1137 503 96 106 39 chr4 10710647 10710751 -191617596 - L1P LINE L1 -945 5201 5091 1880 156 71 6 chr4 10713392 10713744 -191614603 - THE1C LTR MaLR 0 375 1 783 181 0 0 chr4 10725903 10726041 -191602306 + L1PA8 LINE L1 6011 6148 -24 598 244 62 12 chr4 10727369 10727529 -191600818 - MER31A LTR ERV1 -13 472 305 652 171 79 7 chr4 10727532 10727672 -191600675 - MER31A LTR ERV1 -335 150 1 2536 191 71 12 chr4 10735561 10736137 -191592210 - LTR38B LTR ERV1 0 610 1 1160 89 0 4 chr4 10739731 10739957 -191588390 - L1PA8 LINE L1 -1 6171 5869 5989 24 3 0 chr4 10747944 10748623 -191579724 - L1PA3 LINE L1 -4 6151 5471 1132 249 63 9 chr4 10749379 10749712 -191578635 - MER31A LTR ERV1 -134 351 1 186 128 0 0 chr4 10750836 10750875 -191577472 + (TA)n Simple_repeat Simple_repeat 1 39 0 373 222 128 128 chr4 10752061 10752467 -191575880 - MLT1D LTR MaLR -87 418 13 234 0 0 0 chr4 10752547 10752573 -191575774 + (TGGGGG)n Simple_repeat Simple_repeat 2 27 0 3329 101 13 0 chr4 10754540 10754994 -191573353 + LTR46 LTR ERV1 1 460 0 1201 189 231 37 chr4 10758241 10758669 -191569678 - MER9 LTR ERVK 0 511 1 23267 174 41 19 chr4 10758669 10763798 -191564549 - HERVK9 LTR ERVK 0 7316 1626 3091 183 40 36 chr4 10763794 10764693 -191563654 - HERVK9 LTR ERVK -5249 667 1 * 1706 204 69 35 chr4 10764693 10765184 -191563163 - MER9 LTR ERVK 0 511 4 2089 49 42 0 chr4 10770180 10770445 -191557902 + L1PA5 LINE L1 5879 6154 0 1486 197 141 5 chr4 10773713 10774089 -191554258 + MSTA LTR MaLR 1 427 -1 1778 187 114 3 chr4 10775441 10775826 -191552521 + MSTA LTR MaLR 1 428 0 1185 168 59 35 chr4 10777837 10778123 -191550224 - L1PB4 LINE L1 -5 6151 5859 417 276 104 8 chr4 10780537 10780671 -191547676 - MLT1D LTR MaLR -40 465 319 3278 158 50 10 chr4 10783536 10784151 -191544196 + MER51C LTR ERV1 1 640 0 988 176 10 10 chr4 10785599 10785792 -191542555 - AluSg/x SINE Alu 0 312 120 948 28 0 0 chr4 10785792 10785900 -191542447 - L1PA3 LINE L1 -3 6152 6045 1653 112 145 0 chr4 10785900 10786149 -191542198 - AluSx SINE Alu -27 285 1 534 242 113 38 chr4 10787720 10787906 -191540441 + MER2 DNA MER2_type 67 266 -79 7238 47 9 0 chr4 10792765 10793948 -191534399 - L1PA4 LINE L1 0 6155 4963 8335 27 9 1 chr4 10793948 10794934 -191533413 + L1PA4 LINE L1 3953 4946 -1200 593 287 61 72 chr4 10794934 10795391 -191532956 - MLT1D LTR MaLR -48 457 6 344 263 74 115 chr4 10797548 10798062 -191530285 - MLT1D LTR MaLR -8 497 5 241 338 28 21 chr4 10798074 10798219 -191530128 - LTR16C LTR ERVL -60 431 286 5709 90 42 1 chr4 10801629 10802439 -191525908 + L1PA8 LINE L1 5327 6169 -3 447 259 96 81 chr4 10809131 10809602 -191518745 - MLT1D LTR MaLR 0 505 28 229 303 49 42 chr4 10809633 10809775 -191518572 - LTR16C LTR ERVL -60 431 289 2236 84 48 0 chr4 10810429 10810739 -191517608 - L1PA7 LINE L1 0 6154 5830 1214 207 39 0 chr4 10813823 10814079 -191514268 + MER2 DNA MER2_type 2 267 -78 12914 121 73 11 chr4 10814396 10816649 -191511698 - L1PBa LINE L1 -3836 3026 571 422 271 118 14 chr4 10816655 10816799 -191511548 + MER50 LTR ERV1 10 168 -566 3060 130 20 130 chr4 10816935 10817595 -191510752 - LTR18B LTR ERVL -27 587 1 1026 228 128 9 chr4 10817595 10817913 -191510434 + MER50 LTR ERV1 293 649 -85 206 200 0 0 chr4 10868483 10868518 -191459829 + polypyrimidine Low_complexity Low_complexity 2 36 0 2380 61 10 17 chr4 10869109 10869405 -191458942 - AluY SINE Alu -17 294 1 2374 101 0 0 chr4 10870198 10870504 -191457843 - AluSx SINE Alu -6 306 1 1172 138 5 27 chr4 10871214 10871402 -191456945 - L1PB3 LINE L1 0 6154 5971 234 261 36 45 chr4 10872249 10872360 -191455987 + MLT1K LTR MaLR 470 579 -9 1666 196 79 9 chr4 10872442 10872474 -191455873 - MLT1A1 LTR MaLR 0 365 337 2215 109 3 3 chr4 10872474 10872778 -191455569 + AluSx SINE Alu 1 304 -8 1666 196 79 9 chr4 10872778 10873086 -191455261 - MLT1A1 LTR MaLR -28 337 1 691 308 24 28 chr4 10873179 10873426 -191454921 + MIR SINE MIR 5 250 -12 2228 120 0 3 chr4 10873899 10874198 -191454149 - AluSx SINE Alu -14 298 1 219 305 0 21 chr4 10874446 10874541 -191453806 + GA-rich Low_complexity Low_complexity 4 96 0 208 340 60 10 chr4 10874876 10874976 -191453371 + L2 LINE L2 3168 3272 0 819 235 132 80 chr4 10874991 10875505 -191452842 + MLT1C LTR MaLR 9 433 -34 195 261 0 0 chr4 10875968 10876014 -191452333 + MIR SINE MIR 217 262 0 2716 104 0 48 chr4 10876101 10876494 -191451853 + MER51B LTR ERV1 2 375 -2 588 264 14 0 chr4 10876521 10876661 -191451686 + MIR SINE MIR 55 196 -66 22 0 0 0 chr4 10876765 10876787 -191451560 + AT_rich Low_complexity Low_complexity 1 22 0 2362 85 3 0 chr4 10877353 10877647 -191450700 + AluSp SINE Alu 1 295 -18 2395 65 7 10 chr4 10877649 10877959 -191450388 + AluY SINE Alu 1 309 -2 408 198 12 0 chr4 10878112 10878198 -191450149 - MIR SINE MIR -4 258 172 4085 76 8 6 chr4 10878342 10878854 -191449493 + LTR10D LTR ERV1 1 513 0 2276 179 5 23 chr4 10879081 10879478 -191448869 - MLT1B LTR MaLR 0 390 1 288 264 14 0 chr4 10879561 10879633 -191448714 - MIR SINE MIR -123 139 67 364 262 110 14 chr4 10879720 10879838 -191448509 + MIR SINE MIR 74 210 -52 2097 111 28 0 chr4 10879838 10880126 -191448221 + AluSx SINE Alu 1 296 -16 364 262 110 14 chr4 10880126 10880152 -191448195 + MIR SINE MIR 210 232 -30 2197 122 0 0 chr4 10881084 10881395 -191446952 + AluSx SINE Alu 1 311 -1 2136 125 70 25 chr4 10881571 10881930 -191446417 - THE1C LTR MaLR 0 375 1 2087 122 3 3 chr4 10882619 10882913 -191445434 + AluSx SINE Alu 1 294 -18 244 207 52 7 chr4 10882918 10883053 -191445294 + (TA)n Simple_repeat Simple_repeat 1 141 0 2327 104 0 0 chr4 10883212 10883520 -191444827 - AluSg SINE Alu -2 308 1 2484 62 0 7 chr4 10883553 10883861 -191444486 - AluY SINE Alu -5 306 1 198 357 20 10 chr4 10883902 10884000 -191444347 - MIR SINE MIR -113 149 51 219 244 151 23 chr4 10884761 10884847 -191443500 + MIR SINE MIR 48 144 -118 1515 188 82 8 chr4 10884893 10885330 -191443017 - MLT1D LTR MaLR -1 504 1 994 215 195 23 chr4 10885601 10885945 -191442402 + MLT1I LTR MaLR 1 403 -6 236 338 75 30 chr4 10886095 10886228 -191442119 - MIR SINE MIR -73 189 51 2457 50 0 20 chr4 10886242 10886544 -191441803 - AluY SINE Alu -15 296 1 2246 102 3 0 chr4 10886557 10886850 -191441497 - AluSx SINE Alu -18 294 1 2007 125 0 56 chr4 10886859 10887221 -191441126 - AluSx SINE Alu 0 312 1 2462 74 0 3 chr4 10888265 10888564 -191439783 + AluSc SINE Alu 1 298 -11 2033 141 0 3 chr4 10888966 10889265 -191439082 - AluSq SINE Alu -15 298 1 686 270 20 5 chr4 10889683 10889887 -191438460 - MER113 DNA MER1_type? -110 411 205 2529 122 53 68 chr4 10889909 10890333 -191438014 + MER4E LTR ERV1 1 598 -181 1942 97 3 31 chr4 10890333 10890622 -191437725 + AluSq SINE Alu 24 304 -9 2529 122 53 68 chr4 10890622 10890796 -191437551 + MER4E LTR ERV1 598 773 -6 2728 169 38 17 chr4 10890798 10891324 -191437023 - L1MB3 LINE L1 -18 6165 5629 2259 118 0 0 chr4 10891673 10891970 -191436377 - AluSx SINE Alu -15 297 1 219 315 0 0 chr4 10892449 10892503 -191435844 + L2 LINE L2 3210 3263 -9 31 26 0 0 chr4 10892732 10892770 -191435577 + AT_rich Low_complexity Low_complexity 1 38 0 4966 16 0 9 chr4 10893264 10893836 -191434511 - L1PA2 LINE L1 0 6155 5617 4414 30 0 6 chr4 10893836 10894367 -191433980 + L1P LINE L1 4787 5314 -832 2387 78 0 3 chr4 10894394 10894689 -191433658 + AluSx SINE Alu 1 294 -18 203 399 38 27 chr4 10894697 10894880 -191433467 + L2 LINE L2 2748 2932 -382 2052 233 33 12 chr4 10894925 10895435 -191432912 + Charlie1 DNA MER1_type 1778 2298 -463 26 30 0 0 chr4 10895490 10895523 -191432824 + AT_rich Low_complexity Low_complexity 1 33 0 2245 110 7 0 chr4 10895991 10896290 -191432057 - AluSq SINE Alu -12 301 1 257 311 114 0 chr4 10896866 10896998 -191431349 + L1M4 LINE L1 2214 2360 -3786 23 33 0 0 chr4 10897836 10897866 -191430481 + AT_rich Low_complexity Low_complexity 1 30 0 180 0 0 0 chr4 10899261 10899281 -191429066 + (TG)n Simple_repeat Simple_repeat 1 20 0 574 260 86 34 chr4 10899763 10900103 -191428244 + L1ME LINE L1 5438 5799 -363 2448 84 0 0 chr4 10901418 10901726 -191426621 + AluY SINE Alu 3 310 -1 2350 106 6 0 chr4 10901731 10902042 -191426305 + AluSq SINE Alu 1 313 0 232 325 145 0 chr4 10902054 10902171 -191426176 - L2 LINE L2 0 3313 3180 383 191 229 49 chr4 10902283 10902466 -191425881 - L2 LINE L2 -219 3053 2838 * 553 308 126 52 chr4 10902441 10903022 -191425325 - L2 LINE L2 -655 2659 2036 186 43 0 0 chr4 10903039 10903062 -191425285 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1839 154 43 3 chr4 10903182 10903481 -191424866 + AluJb SINE Alu 1 311 -1 231 180 0 0 chr4 10903481 10903521 -191424826 + GA-rich Low_complexity Low_complexity 10 52 0 294 29 0 0 chr4 10903524 10903559 -191424788 + (GGA)n Simple_repeat Simple_repeat 2 36 0 194 205 218 26 chr4 10903855 10903933 -191424414 - MIR SINE MIR -164 98 6 2309 65 10 3 chr4 10904514 10904804 -191423543 - AluY SINE Alu -19 292 1 530 284 144 32 chr4 10905705 10905990 -191422357 - L2 LINE L2 0 3313 2997 211 306 65 56 chr4 10906780 10906888 -191421459 - MIR3 SINE MIR -49 159 51 21 0 0 0 chr4 10907542 10907563 -191420784 + AT_rich Low_complexity Low_complexity 1 21 0 642 319 67 34 chr4 10907728 10908282 -191420065 + L1ME4a LINE L1 5506 6077 -44 192 343 101 0 chr4 10908778 10908877 -191419470 - MIR SINE MIR -68 140 32 250 240 31 0 chr4 10909422 10909518 -191418829 + CT-rich Low_complexity Low_complexity 1 99 0 187 246 41 98 chr4 10909569 10909691 -191418656 + MIR SINE MIR 17 131 -77 2263 96 3 34 chr4 10910857 10911180 -191417167 - AluSp SINE Alu 0 313 1 319 365 7 22 chr4 10911185 10911322 -191417025 - MIR3 SINE MIR -62 146 12 229 331 52 22 chr4 10911519 10911655 -191416692 + MIR SINE MIR 105 244 -18 294 212 94 24 chr4 10912303 10912388 -191415959 + MIR SINE MIR 95 185 -77 2014 120 3 7 chr4 10912415 10912728 -191415619 + AluSx SINE Alu 1 312 0 27 29 0 0 chr4 10913417 10913451 -191414896 + AT_rich Low_complexity Low_complexity 1 34 0 291 330 11 0 chr4 10913922 10914013 -191414334 + MIR SINE MIR 49 140 -122 687 156 0 31 chr4 10914165 10914293 -191414054 - L1MD1 LINE L1 -5 6237 6114 617 187 0 41 chr4 10914507 10914630 -191413717 + FLAM_C SINE Alu 2 119 -24 587 26 26 0 chr4 10914633 10914709 -191413638 + (GAAA)n Simple_repeat Simple_repeat 2 79 0 364 294 88 0 chr4 10914842 10914978 -191413369 + MIR SINE MIR 106 253 -9 708 254 50 18 chr4 10914983 10915203 -191413144 - MER113 DNA MER1_type? -26 495 269 234 189 205 39 chr4 10915229 10915356 -191412991 - MER113 DNA MER1_type? -357 164 17 583 234 108 6 chr4 10916457 10916615 -191411732 + MER5B DNA MER1_type 5 178 0 2267 111 0 0 chr4 10916635 10916924 -191411423 + AluSx SINE Alu 1 289 -23 1144 81 23 0 chr4 10917009 10917039 -191411308 + (TTTC)n Simple_repeat Simple_repeat 1 206 0 1144 81 23 0 chr4 10917039 10917211 -191411136 + (TTTC)n Simple_repeat Simple_repeat 3 178 0 193 125 21 21 chr4 10917217 10917265 -191411082 + T-rich Low_complexity Low_complexity 1 48 0 352 342 74 30 chr4 10917271 10917473 -191410874 - MIR SINE MIR -32 230 20 1678 155 10 46 chr4 10917564 10917868 -191410479 - AluSx SINE Alu -19 293 1 226 356 117 37 chr4 10918131 10918294 -191410053 - L2 LINE L2 -17 3255 3080 1256 128 22 0 chr4 10918400 10918579 -191409768 + MSTA LTR MaLR 246 428 0 1784 163 80 23 chr4 10919468 10919818 -191408529 + THE1C LTR MaLR 6 375 0 2214 112 10 0 chr4 10920372 10920675 -191407672 + AluSx SINE Alu 1 306 -6 223 347 124 0 chr4 10920734 10920855 -191407492 - L2 LINE L2 0 3272 3137 236 109 0 22 chr4 10921005 10921051 -191407296 + (TA)n Simple_repeat Simple_repeat 2 46 0 207 139 0 0 chr4 10921245 10921281 -191407066 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 311 313 24 60 chr4 10921878 10922044 -191406303 - MIR SINE MIR -89 173 14 426 85 0 0 chr4 10922064 10922123 -191406224 + (TG)n Simple_repeat Simple_repeat 2 60 0 242 222 0 48 chr4 10922383 10922446 -191405901 - L2 LINE L2 -8 3305 3246 188 310 17 17 chr4 10922668 10922726 -191405621 - L2 LINE L2 -195 3077 3020 224 184 0 82 chr4 10922871 10922920 -191405427 + MIR3 SINE MIR 125 169 -39 231 114 0 0 chr4 10923085 10923120 -191405227 + (CACAA)n Simple_repeat Simple_repeat 1 35 0 664 258 65 50 chr4 10923801 10924138 -191404209 - L2 LINE L2 -46 3267 2926 2033 176 88 25 chr4 10924140 10924537 -191403810 - MSTC LTR MaLR -1 427 6 5020 256 90 31 chr4 10924540 10926178 -191402169 - MSTC-int LTR MaLR 0 1735 2 2203 176 25 32 chr4 10926180 10926611 -191401736 - MSTC LTR MaLR 0 428 1 4708 222 19 39 chr4 10926731 10928438 -191399909 - L1MA10 LINE L1 -1 6333 4660 443 213 16 57 chr4 10929552 10929651 -191398696 - MER63 DNA MER1_type -11 1050 955 2498 52 0 7 chr4 10929651 10929957 -191398390 + AluY SINE Alu 1 304 -7 443 213 16 57 chr4 10929957 10929979 -191398368 - MER63 DNA MER1_type -106 955 934 617 202 8 8 chr4 10929981 10930105 -191398242 - Tigger7 DNA MER2_type 0 2587 2464 2869 188 40 8 chr4 10930106 10930632 -191397715 - Tigger7 DNA MER2_type -1944 543 1 1764 117 0 78 chr4 10930695 10931004 -191397343 - AluSx SINE Alu -23 289 5 3122 184 43 57 chr4 10931245 10931288 -191397059 + LTR8A LTR ERV1 1 43 -684 2102 114 0 29 chr4 10931288 10931595 -191396752 - AluY SINE Alu -13 298 1 3122 184 43 57 chr4 10931595 10932288 -191396059 + LTR8A LTR ERV1 43 727 0 433 214 160 0 chr4 10932728 10932859 -191395488 - MER103 DNA DNA -1 165 14 2167 128 0 6 chr4 10932880 10933193 -191395154 - AluSx SINE Alu -1 311 1 238 250 284 0 chr4 10934399 10934515 -191393832 + MIR3 SINE MIR 45 193 -15 2259 89 0 3 chr4 10936234 10936560 -191391787 + AluSg SINE Alu 1 325 0 1061 256 103 38 chr4 10936675 10937151 -191391196 + LTR33 LTR ERVL 15 521 0 391 265 8 53 chr4 10938310 10938442 -191389905 + MIR SINE MIR 46 171 -91 710 242 137 14 chr4 10938751 10939028 -191389319 - L1MCc LINE L1 -5152 1271 961 820 161 77 0 chr4 10939346 10939489 -191388858 - MER20 DNA MER1_type -65 154 1 221 274 0 0 chr4 10939701 10939752 -191388595 + L2 LINE L2 3245 3295 -18 2020 137 0 71 chr4 10939847 10940183 -191388164 - AluJb SINE Alu 0 312 1 1753 182 0 14 chr4 10940343 10940640 -191387707 - AluJb SINE Alu -19 293 1 249 225 236 0 chr4 10941353 10941442 -191386905 - L2 LINE L2 -1 3312 3203 964 114 0 0 chr4 10941530 10941662 -191386685 - AluJb SINE Alu -2 310 179 241 276 0 13 chr4 10941720 10941796 -191386551 - MIR SINE MIR -121 141 67 2139 136 3 0 chr4 10941834 10942143 -191386204 - AluSg SINE Alu 0 310 1 317 290 72 43 chr4 10942214 10942421 -191385926 + L2 LINE L2 3097 3309 -4 340 316 102 20 chr4 10942664 10942860 -191385487 + L1ME LINE L1 5397 5608 -513 2158 121 0 0 chr4 10943066 10943373 -191384974 + AluSg SINE Alu 1 307 0 520 87 0 0 chr4 10943537 10943606 -191384741 - Alu SINE Alu -8 301 233 374 298 38 30 chr4 10944604 10944735 -191383612 + L2 LINE L2 3140 3271 -1 418 341 56 16 chr4 10945149 10945401 -191382946 - MIR SINE MIR 0 262 1 779 173 120 52 chr4 10945746 10945937 -191382410 + MLT1E3 LTR MaLR 1 204 -420 580 220 85 0 chr4 10945949 10946090 -191382257 + L1MB8 LINE L1 4204 4356 -1790 810 161 0 0 chr4 10946141 10946265 -191382082 + FLAM_C SINE Alu 1 124 -19 3808 221 62 16 chr4 10946275 10947979 -191380368 + L1MB8 LINE L1 4369 6176 -2 1008 221 57 51 chr4 10947979 10948364 -191379983 + MLT1E3 LTR MaLR 215 624 0 327 169 0 46 chr4 10948714 10948779 -191379568 + MLT1B LTR MaLR 117 178 -196 982 240 36 0 chr4 10948830 10949026 -191379321 + MLT1B LTR MaLR 188 390 0 231 338 78 7 chr4 10949206 10949360 -191378987 + MIR SINE MIR 90 254 -8 216 97 0 0 chr4 10949831 10949862 -191378485 + (GA)n Simple_repeat Simple_repeat 2 32 0 210 171 0 0 chr4 10949991 10950032 -191378315 + (TG)n Simple_repeat Simple_repeat 2 42 0 204 40 0 0 chr4 10950114 10950139 -191378208 + (CAAT)n Simple_repeat Simple_repeat 2 26 0 23 54 0 0 chr4 10950210 10950247 -191378100 + AT_rich Low_complexity Low_complexity 1 37 0 298 321 80 30 chr4 10950264 10950566 -191377781 - L1ME LINE L1 -295 5826 5510 2319 107 0 3 chr4 10950741 10951075 -191377272 - AluSq SINE Alu 0 333 1 233 397 40 33 chr4 10951631 10951782 -191376565 + L2 LINE L2 3116 3267 -5 2089 123 3 3 chr4 10952249 10952568 -191375779 - AluSx SINE Alu 0 319 1 1026 166 17 131 chr4 10953714 10954064 -191374283 + MER31A LTR ERV1 10 319 -166 2028 183 75 27 chr4 10954084 10954522 -191373825 + LTR2B LTR ERV1 32 490 0 691 205 58 18 chr4 10954522 10954679 -191373668 + MER31A LTR ERV1 319 482 -3 285 310 60 22 chr4 10954703 10954887 -191373460 + L2 LINE L2 2869 3059 -254 386 265 172 45 chr4 10955127 10955350 -191372997 + MLT1J2 LTR MaLR 196 449 -1 198 272 148 43 chr4 10956088 10956250 -191372097 + MER5A DNA MER1_type 10 188 -1 982 274 108 52 chr4 10956820 10957283 -191371064 + MLT1J LTR MaLR 1 489 -22 350 235 67 79 chr4 10957383 10957536 -191370811 + MIR SINE MIR 37 185 -77 1993 130 58 7 chr4 10958019 10958311 -191370036 - AluSx SINE Alu -5 307 1 225 308 0 15 chr4 10958800 10958865 -191369482 + GA-rich Low_complexity Low_complexity 1 64 0 6620 169 22 24 chr4 10958879 10958976 -191369371 + Tigger3b DNA MER2_type 1 97 -2931 4140 126 24 6 chr4 10958976 10959609 -191368738 + LTR9B LTR ERV1 1 644 0 6620 169 22 24 chr4 10959609 10960745 -191367602 + Tigger3b DNA MER2_type 97 1231 0 219 232 0 0 chr4 10960747 10960803 -191367544 + (CATATA)n Simple_repeat Simple_repeat 3 58 0 197 285 12 0 chr4 10960986 10961060 -191367287 + MIR SINE MIR 77 142 -66 23 0 0 0 chr4 10961090 10961113 -191367234 + AT_rich Low_complexity Low_complexity 1 23 0 195 146 0 0 chr4 10962283 10962324 -191366023 + (CA)n Simple_repeat Simple_repeat 1 41 0 231 248 64 18 chr4 10962376 10962485 -191365862 - L1ME LINE L1 -224 5897 5784 2065 135 0 28 chr4 10962705 10963024 -191365323 - AluSg SINE Alu 0 310 1 329 266 97 0 chr4 10964060 10964184 -191364163 - MIR SINE MIR -96 166 31 2275 152 55 0 chr4 10964712 10965094 -191363253 + MER57A LTR ERV1 1 403 0 658 193 25 0 chr4 10965110 10965229 -191363118 + FLAM_A SINE Alu 1 122 -11 1828 157 36 36 chr4 10965322 10965659 -191362688 - MER1B DNA MER1_type 0 337 1 2234 73 73 0 chr4 10965766 10966052 -191362295 - AluSc SINE Alu -2 307 1 319 246 48 76 chr4 10966092 10966394 -191361953 - L1ME LINE L1 -497 5624 5325 2239 103 0 29 chr4 10966394 10966705 -191361642 - AluSx SINE Alu -10 302 1 319 246 48 76 chr4 10966705 10966722 -191361625 - L1ME LINE L1 -796 5325 5309 211 291 63 16 chr4 10967131 10967258 -191361089 - MIR SINE MIR -107 155 23 234 355 43 7 chr4 10967771 10967912 -191360435 - MIR3 SINE MIR 0 208 63 370 179 0 0 chr4 10968101 10968168 -191360179 - L1MA10 LINE L1 -35 6299 6233 373 172 0 0 chr4 10968169 10968233 -191360114 + L1MB1 LINE L1 5898 5961 -207 1032 219 35 67 chr4 10968286 10968603 -191359744 + L1MA10 LINE L1 5903 6156 -24 253 309 65 2 chr4 10968636 10968747 -191359600 - MIR SINE MIR -54 154 35 22 94 0 0 chr4 10969637 10969701 -191358646 + AT_rich Low_complexity Low_complexity 1 64 0 201 296 25 37 chr4 10970337 10970418 -191357929 - MIR3 SINE MIR -10 198 119 204 175 50 0 chr4 10970936 10970976 -191357371 + (TGAG)n Simple_repeat Simple_repeat 1 42 0 1975 141 0 3 chr4 10972132 10972466 -191355881 - AluSx SINE Alu 0 333 1 1989 131 3 13 chr4 10972812 10973131 -191355216 + AluSx SINE Alu 1 312 0 466 274 63 17 chr4 10973856 10974031 -191354316 - MER5A DNA MER1_type -4 185 3 251 98 39 0 chr4 10974173 10974224 -191354123 + (CATATA)n Simple_repeat Simple_repeat 6 58 0 1953 102 62 11 chr4 10974252 10974526 -191353821 + AluSp SINE Alu 1 288 -25 264 30 0 0 chr4 10974526 10974559 -191353788 + (CAAAC)n Simple_repeat Simple_repeat 2 34 0 294 250 99 33 chr4 10974577 10974729 -191353618 + MIR SINE MIR 29 190 -72 373 297 97 12 chr4 10975175 10975340 -191353007 + MIR SINE MIR 76 254 -8 2287 101 3 0 chr4 10975467 10975764 -191352583 - AluSp SINE Alu -15 298 1 250 222 121 30 chr4 10976881 10976980 -191351367 + L2 LINE L2 3149 3256 -16 180 218 18 18 chr4 10978014 10978069 -191350278 - L2 LINE L2 -8 3305 3251 327 349 94 30 chr4 10978296 10978669 -191349678 + L2 LINE L2 2853 3249 -23 194 294 12 35 chr4 10979635 10979720 -191348627 + L2 LINE L2 2976 3058 -214 334 317 67 6 chr4 10979791 10979955 -191348392 - L2 LINE L2 0 3313 3140 201 356 10 0 chr4 10980527 10980631 -191347716 - MIR SINE MIR -98 164 60 898 218 109 51 chr4 10981763 10982147 -191346200 + MLT1C LTR MaLR 47 459 -8 243 350 153 22 chr4 10982437 10982711 -191345636 - L3 LINE CR1 -425 1152 843 240 287 46 11 chr4 10982810 10982897 -191345450 - MIR SINE MIR -41 221 132 1215 236 107 0 chr4 10982943 10983252 -191345095 - LTR16A LTR ERVL 0 450 109 2725 137 15 0 chr4 10984259 10984667 -191343680 + MLT2C2 LTR ERVL 1 414 -50 6391 134 66 34 chr4 10984706 10984988 -191343359 - Tigger3b DNA MER2_type -1797 1231 960 2289 101 3 10 chr4 10984988 10985295 -191343052 + AluSc SINE Alu 5 309 0 6391 134 66 34 chr4 10985295 10986204 -191342143 - Tigger3b DNA MER2_type -2068 960 1 253 145 26 105 chr4 10986209 10986285 -191342062 + MLT2D LTR ERVL 354 414 0 215 296 37 0 chr4 10986394 10986475 -191341872 - MIR SINE MIR -68 194 111 215 350 17 68 chr4 10987235 10987352 -191340995 + MIR3 SINE MIR 46 156 -52 235 297 42 42 chr4 10988134 10988182 -191340165 - L2 LINE L2 -14 3258 3211 1189 236 108 15 chr4 10988182 10988516 -191339831 - MLT1A1 LTR MaLR 0 365 1 235 297 42 42 chr4 10988516 10988585 -191339762 - L2 LINE L2 -60 3212 3141 309 316 27 0 chr4 10989215 10989378 -191338969 - MIR3 SINE MIR -3 205 34 2589 23 40 0 chr4 10989484 10989783 -191338564 - AluY SINE Alu 0 311 1 432 0 0 0 chr4 10990211 10990259 -191338088 + (CA)n Simple_repeat Simple_repeat 2 49 0 2019 122 3 23 chr4 10990341 10990477 -191337870 + AluSx SINE Alu 1 138 -174 2218 110 0 0 chr4 10990477 10990786 -191337561 + AluSc SINE Alu 1 309 0 2019 122 3 23 chr4 10990786 10990951 -191337396 + AluSx SINE Alu 138 297 -15 231 331 63 28 chr4 10991898 10992040 -191336307 - MIR SINE MIR -114 148 2 324 275 0 0 chr4 10992325 10992405 -191335942 + MIR SINE MIR 173 252 -10 412 313 83 77 chr4 10992431 10993174 -191335173 - L2 LINE L2 -8 3305 2561 355 208 64 48 chr4 10993985 10994110 -191334237 + MER5A DNA MER1_type 10 136 -53 234 319 62 18 chr4 10994121 10994234 -191334113 + MIR SINE MIR 91 208 -54 1721 181 14 7 chr4 10994342 10994635 -191333712 + AluSx SINE Alu 1 295 -17 1741 118 0 118 chr4 10994637 10995001 -191333346 + AluSx SINE Alu 1 302 0 4199 194 41 16 chr4 10995366 10996212 -191332135 - MER63C DNA MER1_type -130 930 59 342 115 0 0 chr4 10996212 10996264 -191332083 + (TA)n Simple_repeat Simple_repeat 1 52 0 4199 194 41 16 chr4 10996264 10996325 -191332022 - MER63C DNA MER1_type -1001 59 1 2235 224 40 9 chr4 10997418 10997971 -191330376 + L1MB8 LINE L1 5586 6155 -23 2539 138 26 28 chr4 10997973 10998400 -191329947 - MSTA LTR MaLR 0 428 3 209 205 0 0 chr4 10999042 10999081 -191329266 + A-rich Low_complexity Low_complexity 2 40 0 231 244 49 12 chr4 10999238 10999320 -191329027 - MIR SINE MIR -109 153 69 198 136 45 0 chr4 11000208 11000252 -191328095 - MIR SINE MIR -119 143 98 2091 96 46 26 chr4 11000260 11000562 -191327785 + AluY SINE Alu 1 308 -3 252 298 61 9 chr4 11000719 11000833 -191327514 + L2 LINE L2 3153 3272 0 196 171 0 0 chr4 11001672 11001707 -191326640 - MIR SINE MIR -111 151 117 1545 213 52 33 chr4 11002161 11002528 -191325819 - MLT1A2 LTR MaLR 0 374 1 25 31 0 0 chr4 11002540 11002572 -191325775 + AT_rich Low_complexity Low_complexity 1 32 0 275 359 27 59 chr4 11002845 11003065 -191325282 + MIR SINE MIR 3 215 -47 2328 49 49 0 chr4 11003747 11004031 -191324316 - AluY SINE Alu -13 298 1 225 0 0 0 chr4 11004033 11004058 -191324289 + (T)n Simple_repeat Simple_repeat 1 25 0 246 216 95 86 chr4 11004080 11004196 -191324151 + MER103 DNA DNA 49 165 -1 276 243 0 0 chr4 11004983 11005057 -191323290 + GA-rich Low_complexity Low_complexity 2 75 0 399 168 22 45 chr4 11005059 11005238 -191323109 + (CAGAGA)n Simple_repeat Simple_repeat 4 178 0 23 78 0 0 chr4 11005937 11005988 -191322359 + AT_rich Low_complexity Low_complexity 1 51 0 346 258 0 11 chr4 11006287 11006376 -191321971 + MIR SINE MIR 59 146 -116 189 221 0 0 chr4 11007014 11007082 -191321265 + GA-rich Low_complexity Low_complexity 2 69 0 456 284 122 52 chr4 11007104 11007466 -191320881 + LTR16A1 LTR ERVL 65 451 -6 273 339 159 8 chr4 11007466 11007717 -191320630 + L2 LINE L2 2602 2890 -424 2305 190 45 49 chr4 11008116 11008742 -191319605 + LTR29 LTR ERV1 1 651 -2 209 273 15 0 chr4 11010117 11010183 -191318164 + (TTCA)n Simple_repeat Simple_repeat 1 67 0 547 311 109 7 chr4 11011483 11011766 -191316581 + L2 LINE L2 2292 2603 -711 278 293 45 38 chr4 11011914 11012047 -191316300 + L2 LINE L2 3140 3273 -40 1888 136 4 0 chr4 11012411 11012676 -191315671 - AluSx SINE Alu -46 266 1 300 302 62 16 chr4 11012859 11012988 -191315359 - MIR SINE MIR -13 249 115 1764 139 17 31 chr4 11117298 11117585 -191210762 + AluJo SINE Alu 5 287 -25 2208 99 3 0 chr4 11117599 11117882 -191210465 + AluSx SINE Alu 1 284 -28 378 0 0 0 chr4 11117882 11117924 -191210423 + (CA)n Simple_repeat Simple_repeat 2 43 0 1839 141 3 33 chr4 11117924 11118059 -191210288 + AluSx SINE Alu 1 138 -174 2221 74 50 11 chr4 11118059 11118342 -191210005 + AluY SINE Alu 1 294 -17 1839 141 3 33 chr4 11118342 11118510 -191209837 + AluSx SINE Alu 138 295 -17 1722 73 0 5 chr4 11118955 11119173 -191209174 - AluY SINE Alu -94 217 1 198 276 10 61 chr4 11119189 11119287 -191209060 - MIR SINE MIR -84 178 86 2523 62 0 7 chr4 11119450 11119759 -191208588 + AluY SINE Alu 4 310 -1 243 259 52 59 chr4 11119872 11120007 -191208340 + LTR33 LTR ERVL 19 152 -369 184 303 28 97 chr4 11120463 11120608 -191207739 + L2 LINE L2 3137 3271 -1 244 215 76 25 chr4 11121527 11121606 -191206741 + MIR SINE MIR 94 176 -86 2867 19 0 0 chr4 11122028 11122339 -191206008 + AluYb8 SINE Alu 1 311 -7 31 0 0 0 chr4 11122605 11122636 -191205711 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr4 11123786 11123808 -191204539 + AT_rich Low_complexity Low_complexity 1 22 0 976 208 79 9 chr4 11123882 11124156 -191204191 + L1MC3 LINE L1 6145 6333 0 310 260 34 34 chr4 11124170 11124347 -191204000 + L1M4 LINE L1 2150 2326 -3820 26 82 0 0 chr4 11124366 11124427 -191203920 + AT_rich Low_complexity Low_complexity 1 61 0 281 281 73 54 chr4 11124461 11124778 -191203569 + L1M4 LINE L1 2386 2708 -3438 551 261 101 70 chr4 11124783 11124940 -191203407 + L1M4 LINE L1 2779 2930 -3216 1543 198 3 3 chr4 11124940 11125223 -191203124 + AluJo SINE Alu 24 306 -6 551 261 101 70 chr4 11125223 11125402 -191202945 + L1M4 LINE L1 2930 3102 -3044 1430 195 54 87 chr4 11125402 11125849 -191202498 - MSTB1 LTR MaLR 0 432 1 551 261 101 70 chr4 11125849 11126619 -191201728 + L1M4 LINE L1 3102 4371 -1775 231 200 38 38 chr4 11126626 11126706 -191201641 + (CATATA)n Simple_repeat Simple_repeat 3 82 0 343 285 28 86 chr4 11128707 11129033 -191199314 - L1MC4a LINE L1 -891 6917 6611 29 60 0 0 chr4 11129166 11129216 -191199131 + AT_rich Low_complexity Low_complexity 1 50 0 651 252 14 0 chr4 11129324 11129463 -191198884 - MER5A DNA MER1_type -3 186 46 20434 191 20 16 chr4 11129464 11136255 -191192092 + L1PA11 LINE L1 1 7627 0 306 122 61 0 chr4 11136255 11136304 -191192043 - MER5A DNA MER1_type -136 53 2 21 57 0 0 chr4 11137072 11137107 -191191240 + AT_rich Low_complexity Low_complexity 1 35 0 557 209 0 16 chr4 11137396 11137525 -191190822 - FRAM SINE Alu -4 172 46 1815 176 14 23 chr4 11137668 11138020 -191190327 - L1PA15 LINE L1 -1 6164 5816 254 250 0 0 chr4 11138020 11138088 -191190259 + L1MD3 LINE L1 7797 7864 -131 1439 186 41 3 chr4 11138089 11138384 -191189963 - MLT1A1 LTR MaLR 0 365 60 414 213 0 0 chr4 11138390 11138484 -191189863 + (TG)n Simple_repeat Simple_repeat 2 95 0 357 195 55 23 chr4 11138556 11138684 -191189663 + L1MD3 LINE L1 7864 7995 0 1584 220 0 0 chr4 11139228 11139510 -191188837 - AluJo SINE Alu -30 282 1 2206 119 3 3 chr4 11140155 11140467 -191187880 - AluSp SINE Alu -1 312 1 1349 170 10 179 chr4 11140774 11141287 -191187060 + MSTA LTR MaLR 1 428 0 262 292 106 19 chr4 11141586 11141850 -191186497 + L1ME3A LINE L1 4698 4984 -1162 400 287 124 0 chr4 11141870 11142079 -191186268 + L1ME3A LINE L1 5035 5269 -877 207 181 0 69 chr4 11142080 11142152 -191186195 + (TA)n Simple_repeat Simple_repeat 1 67 0 1349 273 86 19 chr4 11142176 11142825 -191185522 + L1ME3A LINE L1 5303 5996 -174 1867 168 0 10 chr4 11143448 11143752 -191184595 - AluJb SINE Alu -11 301 1 436 284 107 50 chr4 11143796 11144134 -191184213 + L1ME4a LINE L1 5608 5964 -157 753 193 0 20 chr4 11144363 11144513 -191183834 + L1MB2 LINE L1 5450 5596 -587 2594 135 4 0 chr4 11144523 11145165 -191183182 - L1P4 LINE L1 -608 5555 4910 2762 174 10 31 chr4 11145165 11145747 -191182600 + L1MB2 LINE L1 5595 6164 -7 1875 178 0 25 chr4 11145993 11146313 -191182034 - AluJb SINE Alu 0 312 1 657 200 32 7 chr4 11146313 11146468 -191181879 + MER3 DNA MER1_type 34 192 -17 205 350 34 26 chr4 11146992 11147109 -191181238 + MIR SINE MIR 34 151 -111 222 91 0 0 chr4 11147399 11147432 -191180915 + (TTTTTG)n Simple_repeat Simple_repeat 1 33 0 1159 205 47 18 chr4 11148660 11148938 -191179409 + MLT1A1 LTR MaLR 1 286 -79 680 220 21 0 chr4 11148935 11149076 -191179271 + MLT1A1 LTR MaLR 222 365 0 * 387 60 0 0 chr4 11149229 11149279 -191179068 + (TG)n Simple_repeat Simple_repeat 1 50 0 479 227 95 74 chr4 11149546 11149872 -191178475 - LTR37A LTR ERV1 -42 384 52 1051 212 45 84 chr4 11152084 11152545 -191175802 + MLT1C LTR MaLR 7 483 -22 2595 111 14 3 chr4 11152545 11152916 -191175431 - THE1C LTR MaLR 0 375 1 1051 212 45 84 chr4 11152916 11152937 -191175410 + MLT1C LTR MaLR 483 503 -2 306 331 59 56 chr4 11153623 11153964 -191174383 - L2 LINE L2 -1 3312 2971 186 300 60 50 chr4 11154059 11154159 -191174188 - L2 LINE L2 -494 2820 2720 408 271 53 6 chr4 11154234 11154404 -191173943 - MER5B DNA MER1_type 0 178 1 289 119 0 0 chr4 11154447 11154489 -191173858 - MLT1A1 LTR MaLR -7 358 317 357 232 50 0 chr4 11154912 11155011 -191173336 + MER5A DNA MER1_type 9 112 -77 251 333 81 30 chr4 11155097 11155295 -191173052 - Charlie8 DNA MER1_type -2198 219 12 4769 149 0 23 chr4 11156488 11157358 -191170989 - L1PA16 LINE L1 0 6166 5317 1436 178 4 19 chr4 11157371 11157641 -191170706 - AluJb SINE Alu -1 311 46 4858 220 18 8 chr4 11157650 11158890 -191169457 - L1 LINE L1 -815 5331 4080 335 309 0 0 chr4 11158890 11158971 -191169376 - L2 LINE L2 -11 3302 3222 619 343 98 26 chr4 11159180 11159708 -191168639 - L2 LINE L2 -233 3080 2517 1623 216 45 39 chr4 11160086 11160550 -191167797 - MLT1C LTR MaLR 0 467 1 505 347 18 18 chr4 11160550 11160775 -191167572 + L3 LINE CR1 1323 1547 -30 1652 164 12 18 chr4 11160813 11161142 -191167205 + L1MB7 LINE L1 5839 6165 -19 249 337 58 0 chr4 11161175 11161261 -191167086 - MIR SINE MIR -108 154 64 1856 159 24 29 chr4 11161314 11161691 -191166656 + THE1C LTR MaLR 1 375 0 908 229 78 53 chr4 11162007 11162365 -191165982 - MLT1E3 LTR MaLR 0 624 258 496 217 9 9 chr4 11162470 11162576 -191165771 - MLT1E3 LTR MaLR -548 106 1 1820 160 9 29 chr4 11162900 11163250 -191165097 - MLT1B LTR MaLR -47 343 1 22 0 0 0 chr4 11164893 11164915 -191163432 + AT_rich Low_complexity Low_complexity 1 22 0 346 284 29 0 chr4 11165360 11165462 -191162885 + MIR SINE MIR 86 190 -72 687 168 168 45 chr4 11166102 11166257 -191162090 + MER5A DNA MER1_type 10 183 -6 254 268 49 37 chr4 11166692 11166774 -191161573 + L2 LINE L2 3189 3271 -1 322 329 0 0 chr4 11166878 11166963 -191161384 + polypyrimidine Low_complexity Low_complexity 5 89 0 243 0 0 0 chr4 11166963 11166990 -191161357 + (CAT)n Simple_repeat Simple_repeat 2 28 0 198 308 103 13 chr4 11167003 11167081 -191161266 - MIR SINE MIR -128 134 50 25 31 0 0 chr4 11167350 11167382 -191160965 + AT_rich Low_complexity Low_complexity 1 32 0 1831 119 61 51 chr4 11167393 11167688 -191160659 - AluSx SINE Alu -14 298 1 312 27 0 0 chr4 11168371 11168408 -191159939 + (TG)n Simple_repeat Simple_repeat 2 38 0 829 325 205 19 chr4 11168755 11169488 -191158859 + L2 LINE L2 2088 2956 -358 357 313 36 46 chr4 11169541 11169736 -191158611 + L2 LINE L2 3121 3313 0 423 267 111 75 chr4 11170271 11170541 -191157806 + MIR SINE MIR 5 262 0 244 349 91 20 chr4 11170974 11171172 -191157175 + MIR SINE MIR 20 231 -31 197 286 48 32 chr4 11171168 11171231 -191157116 + MIR SINE MIR 89 152 -56 * 224 261 14 14 chr4 11171315 11171384 -191156963 + CT-rich Low_complexity Low_complexity 3 71 0 443 275 49 50 chr4 11171534 11171703 -191156644 - MIR SINE MIR -54 154 33 771 240 27 74 chr4 11171898 11172314 -191156033 + MLT1A2 LTR MaLR 1 390 0 940 257 46 6 chr4 11173027 11173362 -191154985 + MER110A LTR ERV1 143 470 -2 21 0 0 0 chr4 11173509 11173530 -191154817 + AT_rich Low_complexity Low_complexity 1 21 0 208 333 0 0 chr4 11173984 11174044 -191154303 - MIR SINE MIR -6 256 197 210 363 22 11 chr4 11174211 11174302 -191154045 - MER5A DNA MER1_type -39 150 59 603 279 28 16 chr4 11174559 11174806 -191153541 - HAL1 LINE L1 -784 1723 1474 2059 145 3 10 chr4 11174871 11175182 -191153165 - AluSx SINE Alu -3 309 1 2104 223 118 42 chr4 11175373 11176617 -191151730 + L1ME2 LINE L1 4841 6164 0 1466 228 3 19 chr4 11176633 11176949 -191151398 + AluJo SINE Alu 1 311 -1 311 315 99 6 chr4 11176954 11177135 -191151212 + L1M4 LINE L1 2967 3164 -2982 206 264 111 35 chr4 11178592 11178682 -191149665 - MIR SINE MIR 0 262 156 1661 180 0 17 chr4 11178682 11178977 -191149370 - AluJb SINE Alu -21 291 2 206 264 111 35 chr4 11178977 11179030 -191149317 - MIR SINE MIR -106 156 108 588 256 236 28 chr4 11179262 11179512 -191148835 + LTR16C LTR ERVL 188 489 -2 2060 117 7 10 chr4 11179963 11180254 -191148093 - AluSg SINE Alu -14 296 7 2272 192 83 38 chr4 11181111 11181591 -191146756 + MLT1D LTR MaLR 3 504 -1 449 336 18 10 chr4 11181674 11181866 -191146481 + MIR SINE MIR 7 201 -61 441 252 57 0 chr4 11182833 11182956 -191145391 - Zaphod DNA AcHobo 0 4031 3902 1099 325 87 8 chr4 11182968 11183370 -191144977 - Zaphod DNA AcHobo -634 59 64 363 60 0 0 chr4 11183370 11183420 -191144927 + (TG)n Simple_repeat Simple_repeat 1 50 0 1099 325 87 8 chr4 11183420 11183490 -191144857 - Zaphod DNA AcHobo -628 65 2 1375 217 77 53 chr4 11184580 11185036 -191143311 - MLT1C LTR MaLR 0 467 1 806 253 92 0 chr4 11185215 11185444 -191142903 - MIR SINE MIR 0 262 13 567 256 176 6 chr4 11185551 11185864 -191142483 + L1ME4a LINE L1 5742 6107 -14 756 32 0 0 chr4 11186405 11186500 -191141847 + (CCCTA)n Simple_repeat Simple_repeat 2 96 0 1503 81 0 24 chr4 11186501 11186712 -191141635 - AluY SINE Alu -19 292 87 1222 41 0 7 chr4 11186728 11186874 -191141473 - AluY SINE Alu -166 145 1 2277 113 0 3 chr4 11187506 11187817 -191140530 + AluSg SINE Alu 1 310 0 635 268 212 89 chr4 11188943 11189458 -191138889 - MLT1H1 LTR MaLR -2 593 16 414 252 0 0 chr4 11189498 11189629 -191138718 + (TCCA)n Simple_repeat Simple_repeat 2 132 0 362 313 119 0 chr4 11189633 11189767 -191138580 - L2 LINE L2 0 3272 3123 356 315 22 63 chr4 11189961 11190183 -191138164 + L2 LINE L2 3013 3225 -88 324 318 39 31 chr4 11190290 11190419 -191137928 + MIR SINE MIR 23 152 -56 207 0 0 0 chr4 11190638 11190661 -191137686 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 1720 124 31 8 chr4 11190795 11191053 -191137294 - L1PA10 LINE L1 -2 6166 5903 968 323 29 39 chr4 11191656 11192068 -191136279 - LTR16C LTR ERVL -10 481 74 468 0 0 0 chr4 11192199 11192251 -191136096 + (TA)n Simple_repeat Simple_repeat 2 53 0 399 56 0 0 chr4 11192331 11192385 -191135962 + (TG)n Simple_repeat Simple_repeat 2 55 0 1729 167 41 10 chr4 11192520 11192813 -191135534 + AluJo SINE Alu 1 302 -10 818 278 30 25 chr4 11193217 11193580 -191134767 + L1MEc LINE L1 1354 1718 -4678 340 265 53 30 chr4 11193583 11193715 -191134632 + L1M4 LINE L1 4118 4252 -1894 * 1107 249 87 67 chr4 11193692 11193980 -191134367 + L1M4 LINE L1 4560 4841 -1305 2542 121 25 0 chr4 11193980 11194335 -191134012 + THE1B LTR MaLR 1 364 0 1107 249 87 67 chr4 11194335 11194641 -191133706 + L1M4 LINE L1 4841 5166 -980 819 153 38 0 chr4 11194638 11194795 -191133552 - L1P LINE L1 -759 5387 5225 * 2038 94 0 4 chr4 11194788 11195064 -191133283 + L1PA12 LINE L1 5722 5996 -172 1119 236 186 44 chr4 11195418 11195778 -191132569 - L1M4 LINE L1 -399 5767 5360 213 94 0 0 chr4 11195827 11195859 -191132488 + (TG)n Simple_repeat Simple_repeat 1 32 0 40195 51 31 13 chr4 11195920 11196251 -191132096 - L1M4 LINE L1 -834 5312 4988 3614 25 0 5 chr4 11196251 11196654 -191131693 - L1PA2 LINE L1 -1 6154 5754 40195 51 31 13 chr4 11196654 11201544 -191126803 - L1M4 LINE L1 -1158 4988 13 2401 152 3 3 chr4 11201794 11202150 -191126197 + MLT1A1 LTR MaLR 3 358 -7 478 271 53 6 chr4 11202193 11202363 -191125984 + MER5B DNA MER1_type 1 178 0 277 329 61 52 chr4 11202646 11202974 -191125373 + L2 LINE L2 2982 3312 -1 1086 202 41 9 chr4 11203238 11203456 -191124891 - MLT1B LTR MaLR -165 225 1 355 218 40 40 chr4 11203456 11203555 -191124792 + LTR16C LTR ERVL 393 491 0 201 333 61 18 chr4 11203599 11203764 -191124583 - MIR SINE MIR -75 187 16 241 346 68 30 chr4 11204463 11204596 -191123751 - MIR SINE MIR -119 143 6 904 286 14 56 chr4 11204761 11204902 -191123445 + LTR16B LTR ERVL 95 240 -224 1762 182 30 41 chr4 11204902 11205271 -191123076 - MLT1A1 LTR MaLR 0 365 1 904 286 14 56 chr4 11205271 11205486 -191122861 + LTR16B LTR ERVL 240 436 -28 256 299 23 11 chr4 11205525 11205612 -191122735 + L2 LINE L2 3222 3309 -4 314 186 29 20 chr4 11206040 11206142 -191122205 + (TATATG)n Simple_repeat Simple_repeat 4 106 0 1260 224 4 4 chr4 11206204 11206458 -191121889 - L1PB4 LINE L1 0 6156 5903 1362 173 53 50 chr4 11206464 11206787 -191121560 - MER33 DNA MER1_type 0 324 1 267 258 55 78 chr4 11206944 11207072 -191121275 + MIR SINE MIR 18 142 -120 547 215 267 22 chr4 11207819 11208130 -191120217 - L2 LINE L2 -390 2924 2538 214 365 31 10 chr4 11208160 11208256 -191120091 + MIR SINE MIR 20 117 -145 963 269 81 47 chr4 11208345 11208839 -191119508 - MLT1G1 LTR MaLR -14 535 7 586 301 36 0 chr4 11208906 11209099 -191119248 + MIR SINE MIR 63 262 0 582 262 32 79 chr4 11209502 11209754 -191118593 - MIR SINE MIR -13 249 10 1239 244 128 0 chr4 11210310 11210655 -191117692 + MLT1B LTR MaLR 1 389 -1 2102 125 20 7 chr4 11210779 11211084 -191117263 - AluSg1 SINE Alu 0 309 1 215 313 10 101 chr4 11211134 11211233 -191117114 + L2 LINE L2 3110 3199 -73 1716 170 7 11 chr4 11211261 11211544 -191116803 + AluSx SINE Alu 1 282 -30 2277 113 0 3 chr4 11212653 11212964 -191115383 - AluSg SINE Alu 0 310 1 1136 255 140 36 chr4 11214458 11214979 -191113368 + LTR36 LTR ERV1 1 575 -36 532 265 39 57 chr4 11215619 11215849 -191112498 - MIR SINE MIR 0 262 37 2453 136 25 8 chr4 11215967 11216335 -191112012 - THE1C LTR MaLR -1 374 1 484 251 144 36 chr4 11217303 11217498 -191110849 - MLT1H LTR MaLR -282 267 52 404 141 202 10 chr4 11219388 11219487 -191108860 - LTR8A LTR ERV1 -609 118 1 3051 161 22 6 chr4 11219487 11220021 -191108326 - L1MA9 LINE L1 -186 6126 5584 2234 127 27 0 chr4 11220598 11220930 -191107417 + THE1B LTR MaLR 24 364 0 653 238 36 62 chr4 11220931 11221238 -191107109 + L1ME2 LINE L1 4868 5166 -980 * 795 155 39 0 chr4 11221235 11221390 -191106957 - L1P LINE L1 -759 5387 5227 2905 136 0 24 chr4 11221390 11221841 -191106506 + L1PA16 LINE L1 5722 6166 0 320 333 81 30 chr4 11223035 11223233 -191105114 + Charlie8 DNA MER1_type 12 219 -2198 212 188 42 0 chr4 11223319 11223367 -191104980 - MER5A DNA MER1_type -77 112 63 292 202 37 9 chr4 11223467 11223576 -191104771 + (GGGTG)n Simple_repeat Simple_repeat 1 112 0 675 169 0 0 chr4 11223578 11223755 -191104592 + G-rich Low_complexity Low_complexity 1 177 0 293 242 8 53 chr4 11223770 11223902 -191104445 + G-rich Low_complexity Low_complexity 1 126 0 691 242 48 49 chr4 11223904 11224796 -191103551 + L1ME2 LINE L1 5159 6115 -49 22 35 0 0 chr4 11224835 11224864 -191103483 + AT_rich Low_complexity Low_complexity 1 29 0 229 235 106 12 chr4 11225877 11225962 -191102385 + MIR SINE MIR 114 206 -56 267 96 39 19 chr4 11226183 11226235 -191102112 - L1MA10 LINE L1 0 6334 6282 265 61 0 0 chr4 11226228 11226261 -191102086 + L1MB1 LINE L1 6109 6141 -48 * 1953 186 11 24 chr4 11226421 11226672 -191101675 + MLT1A1 LTR MaLR 1 247 -118 2467 166 23 42 chr4 11226672 11227106 -191101241 - MSTB LTR MaLR 0 426 1 1953 186 11 24 chr4 11227106 11227224 -191101123 + MLT1A1 LTR MaLR 247 365 0 364 273 74 8 chr4 11227251 11227372 -191100975 + MER94 DNA DNA 6 134 0 387 383 0 0 chr4 11227418 11227533 -191100814 - MIR SINE MIR -128 134 20 1378 242 82 7 chr4 11228457 11228886 -191099461 - MLT1C LTR MaLR 0 467 7 406 276 15 80 chr4 11228892 11229091 -191099256 + L2 LINE L2 1539 1724 -1590 1235 269 66 46 chr4 11229100 11229146 -191099201 - MLT2B1 LTR ERVL -8 512 468 360 0 0 0 chr4 11229146 11229186 -191099161 + (GA)n Simple_repeat Simple_repeat 1 40 0 1235 269 66 46 chr4 11229186 11229641 -191098706 - MLT2B1 LTR ERVL -52 468 1 580 289 83 5 chr4 11229641 11229845 -191098502 + L2 LINE L2 1720 1939 -1375 435 299 0 8 chr4 11229847 11229964 -191098383 + L2 LINE L2 3190 3305 -8 551 313 50 88 chr4 11229985 11230053 -191098294 + L2 LINE L2 1948 2017 -1297 2420 62 3 3 chr4 11230053 11230361 -191097986 + AluY SINE Alu 2 309 -2 551 313 50 88 chr4 11230361 11230669 -191097678 + L2 LINE L2 2017 2310 -1004 237 378 31 24 chr4 11230918 11231045 -191097302 - MIR3 SINE MIR -75 133 6 539 258 37 0 chr4 11231708 11231871 -191096476 + L1MEc LINE L1 56 224 -6172 247 348 0 0 chr4 11231913 11232002 -191096345 - L2 LINE L2 0 3272 3184 368 344 119 0 chr4 11232007 11232158 -191096189 + MER91A DNA MER1_type 2 170 -26 261 307 71 29 chr4 11232175 11232315 -191096032 - L2 LINE L2 -84 3229 3084 1890 150 11 11 chr4 11232525 11232872 -191095475 - L1MA4A LINE L1 -2 6301 5955 745 148 0 8 chr4 11232875 11233003 -191095344 + L1MA4A LINE L1 5777 5903 -400 513 262 90 88 chr4 11233163 11233668 -191094679 - L1MC4a LINE L1 -1885 5923 5414 1937 127 25 0 chr4 11233668 11234020 -191094327 - AluSx SINE Alu 0 359 1 513 262 90 88 chr4 11234020 11234182 -191094165 - L1MC4a LINE L1 -2394 5414 5254 279 294 92 61 chr4 11234298 11234625 -191093722 - L2 LINE L2 -2290 1024 688 287 310 50 0 chr4 11234829 11234929 -191093418 + MIR3 SINE MIR 91 195 -13 640 216 132 5 chr4 11235719 11235909 -191092438 - MER20 DNA MER1_type -4 215 2 22 0 0 0 chr4 11236203 11236225 -191092122 + AT_rich Low_complexity Low_complexity 1 22 0 5537 165 33 8 chr4 11236271 11236633 -191091714 + L1MC1 LINE L1 5043 5395 -938 1127 242 118 28 chr4 11236633 11236805 -191091542 + MSTD LTR MaLR 1 156 -240 2085 109 3 3 chr4 11236805 11237088 -191091259 + AluSq SINE Alu 5 287 -26 207 0 0 0 chr4 11237091 11237114 -191091233 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1127 242 118 28 chr4 11237114 11237300 -191091047 + MSTD LTR MaLR 157 396 0 5537 165 33 8 chr4 11237300 11238198 -191090149 + L1MC1 LINE L1 5395 6333 0 23 0 0 0 chr4 11238345 11238368 -191089979 + AT_rich Low_complexity Low_complexity 1 23 0 531 267 10 25 chr4 11238432 11238634 -191089713 - L1MA9 LINE L1 -73 6239 6041 * 1752 167 26 3 chr4 11238631 11238978 -191089369 + L1M2 LINE L1 5283 5637 -675 279 195 39 26 chr4 11240393 11240470 -191087877 - MER117 DNA MER1_type -3 194 117 210 273 0 18 chr4 11240653 11240708 -191087639 - L2 LINE L2 -6 3266 3213 294 284 138 77 chr4 11242031 11242408 -191085939 + MLT1K LTR MaLR 189 588 0 218 368 69 11 chr4 11242803 11242890 -191085457 - L2 LINE L2 -31 3241 3150 459 238 93 34 chr4 11243811 11243980 -191084367 - MIR SINE MIR -63 145 4 204 204 0 23 chr4 11244056 11244100 -191084247 - MIR3 SINE MIR -4 204 162 244 228 152 0 chr4 11244351 11244443 -191083904 - MIR SINE MIR -56 206 101 520 237 243 0 chr4 11247668 11247841 -191080506 - MIR SINE MIR -8 254 40 190 333 48 63 chr4 11248052 11248178 -191080169 + MIR3 SINE MIR 4 127 -81 312 193 57 34 chr4 11248201 11248289 -191080058 + L1MC4 LINE L1 6614 6703 -1339 319 299 23 0 chr4 11248310 11248397 -191079950 + L1MC4 LINE L1 6615 6703 -1339 * 338 273 23 0 chr4 11248381 11248469 -191079878 - L1MC4 LINE L1 -1339 6703 6614 * 341 261 0 22 chr4 11248417 11248509 -191079838 + L1MC4 LINE L1 6614 6703 -1339 303 333 0 0 chr4 11248441 11248531 -191079816 - L1MC4 LINE L1 -1339 6703 6614 * 245 204 0 19 chr4 11248533 11248587 -191079760 + (CATA)n Simple_repeat Simple_repeat 2 54 0 476 328 101 0 chr4 11248680 11248878 -191079469 - MIR SINE MIR -5 257 40 2383 82 3 0 chr4 11250068 11250371 -191077976 + AluY SINE Alu 1 304 -7 307 185 64 0 chr4 11250371 11250449 -191077898 - MLT1H LTR MaLR -7 548 470 695 248 6 0 chr4 11252565 11252726 -191075621 + MER58B DNA MER1_type 180 341 0 213 344 76 46 chr4 11252907 11253038 -191075309 - MIR SINE MIR -115 147 13 21 36 0 0 chr4 11253258 11253286 -191075061 + AT_rich Low_complexity Low_complexity 1 28 0 248 312 46 55 chr4 11253347 11253456 -191074891 + MIR3 SINE MIR 13 120 -88 266 267 209 19 chr4 11253621 11253827 -191074520 - MIR SINE MIR -8 254 10 215 185 0 19 chr4 11254318 11254372 -191073975 + (TA)n Simple_repeat Simple_repeat 2 54 0 191 184 0 20 chr4 11254827 11254876 -191073471 + (TA)n Simple_repeat Simple_repeat 1 48 0 282 279 58 29 chr4 11254974 11255078 -191073269 - MIR SINE MIR -62 200 94 209 333 39 0 chr4 11255082 11255160 -191073187 - MIR SINE MIR -4 258 178 2642 101 0 29 chr4 11256569 11256955 -191071392 + THE1C LTR MaLR 1 375 0 8704 124 43 61 chr4 11256955 11258564 -191069783 + THE1C-int LTR MaLR 1 1580 0 2219 144 25 8 chr4 11258564 11258932 -191069415 + THE1C LTR MaLR 1 374 -1 569 261 39 57 chr4 11259050 11259280 -191069067 + MIR SINE MIR 37 262 0 218 311 115 20 chr4 11259436 11259584 -191068763 + MIR SINE MIR 40 201 -61 762 165 18 0 chr4 11260539 11260709 -191067638 + (TAGA)n Simple_repeat Simple_repeat 1 173 0 798 260 37 20 chr4 11260717 11260963 -191067384 - MIR SINE MIR -10 252 3 4914 123 25 4 chr4 11262205 11262968 -191065379 - MER4E LTR ERV1 0 779 1 1063 303 33 23 chr4 11263102 11263495 -191064852 - LTR16A LTR ERVL 0 450 54 377 287 16 0 chr4 11263672 11263794 -191064553 - LTR16A LTR ERVL 0 450 327 392 315 142 28 chr4 11263808 11264195 -191064152 - LTR16B LTR ERVL 0 464 34 645 86 0 11 chr4 11264447 11264540 -191063807 + MER4A LTR ERV1 1 92 -572 * 1735 142 3 22 chr4 11264536 11264883 -191063464 + MER4A LTR ERV1 266 664 0 1955 112 53 32 chr4 11264943 11265281 -191063066 - THE1B LTR MaLR -15 349 5 281 254 15 0 chr4 11265313 11265380 -191062967 + MIR SINE MIR 7 74 -188 665 343 53 45 chr4 11265381 11266408 -191061939 + HERVL LTR ERVL 4175 5209 -445 1799 163 50 53 chr4 11266426 11266824 -191061523 + MLT2C1 LTR ERVL 1 397 0 492 283 22 27 chr4 11267103 11267287 -191061060 + LTR16B LTR ERVL 270 452 -12 202 206 0 0 chr4 11267637 11267671 -191060676 + (TG)n Simple_repeat Simple_repeat 2 35 0 28 0 0 0 chr4 11267711 11267739 -191060608 + AT_rich Low_complexity Low_complexity 1 28 0 329 289 70 28 chr4 11268452 11268594 -191059753 + MIR SINE MIR 63 210 -52 356 318 6 35 chr4 11269075 11269245 -191059102 + MIR SINE MIR 61 225 -37 214 317 144 40 chr4 11270282 11270484 -191057863 - L2 LINE L2 -270 3043 2821 1156 76 0 30 chr4 11270811 11271077 -191057270 + (TTTC)n Simple_repeat Simple_repeat 1 257 0 206 365 78 0 chr4 11271302 11271417 -191056930 + L2 LINE L2 3190 3313 0 980 306 28 20 chr4 11271484 11272027 -191056320 + MLT2E LTR ERVL 15 626 -2 2057 161 0 0 chr4 11272088 11272399 -191055948 - AluSx SINE Alu -1 311 1 342 123 0 0 chr4 11272777 11272834 -191055513 + (CA)n Simple_repeat Simple_repeat 1 57 0 324 247 88 13 chr4 11272837 11273036 -191055311 - MLT2E LTR ERVL -12 616 351 2248 161 26 6 chr4 11273036 11273751 -191054596 - L1MA8 LINE L1 -608 5683 4949 * 2674 131 18 77 chr4 11273748 11274034 -191054313 + L1MA8 LINE L1 5665 5899 -392 2049 119 3 3 chr4 11274034 11274327 -191054020 + AluSx SINE Alu 1 293 -19 2674 131 18 77 chr4 11274327 11274641 -191053706 + L1MA8 LINE L1 5899 6230 -61 345 117 0 0 chr4 11275037 11275097 -191053250 + (TC)n Simple_repeat Simple_repeat 1 60 0 189 178 0 0 chr4 11275096 11275141 -191053206 + (CA)n Simple_repeat Simple_repeat 1 45 0 * 2032 182 49 3 chr4 11276505 11276890 -191051457 - MER57A LTR ERV1 0 403 1 339 197 236 31 chr4 11277657 11277784 -191050563 - L2 LINE L2 0 3313 3161 23 0 0 0 chr4 11277796 11277819 -191050528 + AT_rich Low_complexity Low_complexity 1 23 0 233 234 108 45 chr4 11277891 11278002 -191050345 - L3 LINE CR1 -305 1272 1155 215 320 149 23 chr4 11278065 11278240 -191050107 + MIR SINE MIR 51 247 -15 651 211 13 26 chr4 11278973 11279115 -191049232 + L1MD1 LINE L1 6089 6230 -12 2338 108 0 0 chr4 11279115 11279422 -191048925 + AluSc SINE Alu 1 307 -2 651 211 13 26 chr4 11279422 11279435 -191048912 + L1MD1 LINE L1 6230 6242 0 606 243 78 86 chr4 11279452 11279860 -191048487 + L1MC5 LINE L1 7527 7931 -30 210 368 68 0 chr4 11280165 11280282 -191048065 + L2 LINE L2 3148 3272 0 220 283 100 0 chr4 11280500 11280560 -191047787 + MIR SINE MIR 130 195 -67 539 274 96 5 chr4 11280579 11280776 -191047571 + MIR SINE MIR 36 250 -12 532 324 3 19 chr4 11281292 11281662 -191046685 + (CA)n Simple_repeat Simple_repeat 1 364 0 264 298 0 0 chr4 11281690 11281821 -191046526 + (CA)n Simple_repeat Simple_repeat 1 131 0 331 379 0 16 chr4 11281864 11282046 -191046301 + (CA)n Simple_repeat Simple_repeat 1 179 0 205 264 0 0 chr4 11282532 11282585 -191045762 + MIR SINE MIR 201 253 -9 24 32 0 0 chr4 11283455 11283486 -191044861 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr4 11283515 11283543 -191044804 + AT_rich Low_complexity Low_complexity 1 28 0 1354 284 78 35 chr4 11283624 11284594 -191043753 + L1M4 LINE L1 4106 5117 -1029 23 54 0 0 chr4 11285218 11285255 -191043092 + AT_rich Low_complexity Low_complexity 1 37 0 26 0 0 0 chr4 11285342 11285368 -191042979 + AT_rich Low_complexity Low_complexity 1 26 0 385 280 19 19 chr4 11285682 11285789 -191042558 - MER97b DNA MER1_type? -558 495 389 1224 168 0 39 chr4 11285789 11286021 -191042326 + AluJb SINE Alu 85 307 -5 1559 256 18 15 chr4 11286021 11286420 -191041927 - MER97c DNA MER1_type? -690 400 1 236 317 0 0 chr4 11287237 11287297 -191041050 + polypyrimidine Low_complexity Low_complexity 5 64 0 231 250 67 19 chr4 11287503 11287607 -191040740 + LTR16C LTR ERVL 355 463 -28 247 393 54 6 chr4 11287953 11288121 -191040226 - MIR SINE MIR -57 205 30 2291 122 0 0 chr4 11288150 11288462 -191039885 - AluSx SINE Alu 0 312 1 182 337 23 12 chr4 11289841 11289927 -191038420 + L2 LINE L2 3186 3272 0 197 33 33 0 chr4 11290335 11290365 -191037982 + (CAAAAA)n Simple_repeat Simple_repeat 2 32 0 202 284 59 39 chr4 11290437 11290539 -191037808 + MIR SINE MIR 84 187 -75 23 0 0 0 chr4 11290743 11290766 -191037581 + AT_rich Low_complexity Low_complexity 1 23 0 257 392 42 0 chr4 11291193 11291313 -191037034 + L2 LINE L2 3123 3247 -25 320 235 73 88 chr4 11291686 11291822 -191036525 + MIR SINE MIR 18 151 -57 2539 145 0 3 chr4 11292126 11292498 -191035849 - THE1C LTR MaLR -4 371 1 1154 138 0 0 chr4 11292539 11292698 -191035649 - AluSg/x SINE Alu -11 301 143 485 289 53 12 chr4 11293338 11293519 -191034828 + MIR SINE MIR 20 206 -56 1196 146 4 92 chr4 11293937 11294144 -191034203 + L1PB4 LINE L1 5930 6116 -40 2311 71 0 0 chr4 11294144 11294450 -191033897 + AluY SINE Alu 1 306 0 1196 146 4 92 chr4 11294450 11294481 -191033866 + L1PB4 LINE L1 6116 6148 -8 198 258 76 15 chr4 11294541 11294607 -191033740 + MIR SINE MIR 103 172 -90 773 315 19 25 chr4 11296686 11296943 -191031404 + MIR SINE MIR 1 256 -6 342 328 23 0 chr4 11298139 11298267 -191030080 + L2 LINE L2 3182 3312 -1 3603 125 65 2 chr4 11299036 11299557 -191028790 - MER41C LTR ERV1 0 554 1 1427 187 30 37 chr4 11299880 11300433 -191027914 - LTR36 LTR ERV1 -2 609 1 238 361 74 0 chr4 11302004 11302126 -191026221 - MIR SINE MIR -51 211 81 404 141 202 10 chr4 11302907 11303006 -191025341 - LTR8A LTR ERV1 -609 118 1 3093 157 22 6 chr4 11303006 11303540 -191024807 - L1MA9 LINE L1 -186 6126 5584 2072 213 8 0 chr4 11304000 11304362 -191023985 + MLT1A1 LTR MaLR 1 365 0 2447 132 46 0 chr4 11304713 11305062 -191023285 + MLT1A1 LTR MaLR 1 365 0 2478 126 9 0 chr4 11305485 11305834 -191022513 - L1PA11 LINE L1 0 6174 5823 24 0 0 0 chr4 11306034 11306058 -191022289 + AT_rich Low_complexity Low_complexity 1 24 0 747 304 25 36 chr4 11306120 11306396 -191021951 + MLT1G LTR MaLR 24 296 -294 382 216 95 47 chr4 11306476 11306624 -191021723 + MLT1G LTR MaLR 388 542 0 213 39 0 0 chr4 11307213 11307239 -191021108 + (TG)n Simple_repeat Simple_repeat 1 26 0 2127 226 3 0 chr4 11307268 11307653 -191020694 + MLT2B1 LTR ERVL 135 520 0 256 326 193 31 chr4 11307838 11308258 -191020089 - L2 LINE L2 0 3313 2826 703 292 110 15 chr4 11308523 11308914 -191019433 - L1MC/D LINE L1 -2007 5801 5374 460 316 97 21 chr4 11309232 11309861 -191018486 + L1M4 LINE L1 4276 4952 -1194 2320 198 35 17 chr4 11310629 11310828 -191017519 + MLT1C LTR MaLR 1 195 -272 288 0 0 0 chr4 11310828 11310860 -191017487 + (CA)n Simple_repeat Simple_repeat 1 32 0 2320 198 35 17 chr4 11310860 11311119 -191017228 + MLT1C LTR MaLR 195 467 0 440 301 40 12 chr4 11311297 11311470 -191016877 - LTR67 LTR ERVL -2 555 378 238 326 34 0 chr4 11311555 11311644 -191016703 - LTR67 LTR ERVL -393 164 73 2257 115 0 0 chr4 11311811 11312106 -191016241 + AluSx SINE Alu 1 295 -17 207 214 0 0 chr4 11312183 11312225 -191016122 + (TTA)n Simple_repeat Simple_repeat 1 42 0 884 215 40 24 chr4 11312324 11312571 -191015776 + L1MC3 LINE L1 7526 7776 -9 2028 118 9 19 chr4 11312958 11313273 -191015074 + AluSx SINE Alu 1 312 0 21 57 0 0 chr4 11314740 11314775 -191013572 + AT_rich Low_complexity Low_complexity 1 35 0 639 125 0 0 chr4 11314900 11315004 -191013343 + (CA)n Simple_repeat Simple_repeat 2 105 0 445 212 12 0 chr4 11315390 11315475 -191012872 - L2 LINE L2 -1 3312 3227 1092 325 15 18 chr4 11315632 11316032 -191012315 - L2 LINE L2 -660 2654 2256 215 372 54 8 chr4 11316344 11316473 -191011874 - L2 LINE L2 0 3272 3138 321 283 17 42 chr4 11316913 11317033 -191011314 + MIR SINE MIR 81 197 -65 192 143 0 0 chr4 11317216 11317258 -191011089 + (CAAAAA)n Simple_repeat Simple_repeat 2 43 0 27 0 0 0 chr4 11317491 11317518 -191010829 + AT_rich Low_complexity Low_complexity 1 27 0 273 345 65 14 chr4 11317661 11317800 -191010547 - MIR3 SINE MIR -47 161 16 926 168 50 40 chr4 11317972 11318174 -191010173 - MER20 DNA MER1_type -12 207 4 1494 166 20 16 chr4 11318867 11319120 -191009227 - Tigger3(Golem) DNA MER2_type -2 3027 2774 2818 99 30 22 chr4 11319121 11319601 -191008746 + MLT2A1 LTR ERVL 1 453 0 2619 137 42 15 chr4 11319601 11320081 -191008266 - Tigger3(Golem) DNA MER2_type -252 2777 2285 277 220 17 0 chr4 11320084 11320143 -191008204 - Tigger3(Golem) DNA MER2_type -2924 105 46 2635 130 37 47 chr4 11320527 11320957 -191007390 - MSTB LTR MaLR 0 426 1 923 169 0 0 chr4 11320984 11321138 -191007209 - MLT1B LTR MaLR 0 390 237 22 0 0 0 chr4 11321414 11321436 -191006911 + AT_rich Low_complexity Low_complexity 1 22 0 1482 230 11 0 chr4 11321482 11321839 -191006508 + L1M4 LINE L1 5043 5403 -743 596 253 68 12 chr4 11321844 11322006 -191006341 + MSTD LTR MaLR 1 171 -225 2228 107 3 3 chr4 11322016 11322324 -191006023 + AluSp SINE Alu 5 312 -1 342 328 23 0 chr4 11323337 11323465 -191004882 - L2 LINE L2 -1 3312 3182 760 321 19 25 chr4 11324661 11324918 -191003429 - MIR SINE MIR -6 256 1 198 258 76 15 chr4 11326997 11327063 -191001284 - MIR SINE MIR -90 172 103 236 67 0 0 chr4 11327123 11327153 -191001194 - L1PB4 LINE L1 0 6156 6119 2337 60 0 0 chr4 11327178 11327459 -191000888 - AluY SINE Alu -29 282 2 408 308 0 8 chr4 11327548 11327665 -191000682 - L2 LINE L2 -8 3305 3190 571 289 83 5 chr4 11327667 11327871 -191000476 - L2 LINE L2 -1375 1939 1720 1410 259 72 52 chr4 11327871 11328326 -191000021 + MLT2B1 LTR ERVL 1 468 -52 360 0 0 0 chr4 11328326 11328366 -190999981 + (TC)n Simple_repeat Simple_repeat 1 40 0 1410 259 72 52 chr4 11328366 11328412 -190999935 + MLT2B1 LTR ERVL 468 512 -8 408 246 25 91 chr4 11328421 11328620 -190999727 - L2 LINE L2 -1590 1724 1539 1508 247 82 7 chr4 11328626 11329055 -190999292 + MLT1C LTR MaLR 7 467 0 260 254 87 16 chr4 11380185 11380311 -190948036 - L1ME4a LINE L1 -203 5918 5784 268 269 56 19 chr4 11380319 11380427 -190947920 - MLT1F LTR MaLR -428 114 3 2196 110 10 0 chr4 11380550 11380842 -190947505 - AluSp SINE Alu -18 295 1 2015 113 16 0 chr4 11380842 11381160 -190947187 + L1MA8 LINE L1 5460 5782 -509 317 186 14 0 chr4 11381161 11381231 -190947116 + (TATATG)n Simple_repeat Simple_repeat 4 74 0 241 146 55 0 chr4 11381231 11381286 -190947061 - LTR66 LTR ERVL -171 439 382 1247 146 0 47 chr4 11381286 11381431 -190946916 + L1MA8 LINE L1 5800 5929 -362 2386 117 17 3 chr4 11381431 11381789 -190946558 - THE1B LTR MaLR 0 364 2 1247 146 0 47 chr4 11381789 11381897 -190946450 + L1MA8 LINE L1 5929 6041 -250 413 112 124 0 chr4 11381901 11381990 -190946357 + L1MA8 LINE L1 6186 6285 -6 2078 151 19 26 chr4 11382458 11382836 -190945511 + THE1C LTR MaLR 1 375 0 273 208 26 13 chr4 11382971 11383048 -190945299 + MLT1I LTR MaLR 90 167 -242 698 207 30 0 chr4 11383414 11383578 -190944769 - L1MB4 LINE L1 -1 6179 6011 24 0 0 0 chr4 11384813 11384837 -190943510 + AT_rich Low_complexity Low_complexity 1 24 0 34 42 0 0 chr4 11385408 11385456 -190942891 + AT_rich Low_complexity Low_complexity 1 48 0 242 240 0 67 chr4 11385875 11385950 -190942397 + MIR3 SINE MIR 99 168 -40 391 116 66 0 chr4 11386219 11386340 -190942007 + (TA)n Simple_repeat Simple_repeat 2 130 0 968 280 86 7 chr4 11386846 11387253 -190941094 + MLT1L LTR MaLR 135 573 -42 569 355 58 37 chr4 11387347 11387725 -190940622 - L2 LINE L2 -39 3274 2889 1538 306 72 25 chr4 11387771 11388629 -190939718 + L1ME1 LINE L1 90 988 -5408 332 249 93 71 chr4 11388755 11389120 -190939227 + L1ME1 LINE L1 1121 1493 -4722 2299 105 3 0 chr4 11389127 11389433 -190938914 + AluSq SINE Alu 1 307 -6 613 282 94 66 chr4 11389482 11389994 -190938353 + L1ME1 LINE L1 2992 3510 -2705 1599 205 23 6 chr4 11390012 11390359 -190937988 + MLT1A1 LTR MaLR 12 364 -1 2482 249 45 37 chr4 11390363 11391551 -190936796 + L1ME1 LINE L1 3524 4721 -1494 1362 96 0 16 chr4 11391551 11391765 -190936582 + AluY SINE Alu 100 310 0 2311 254 47 20 chr4 11391765 11393258 -190935089 + L1ME1 LINE L1 4717 6403 0 234 379 21 0 chr4 11393267 11393362 -190934985 - L2 LINE L2 -467 2847 2751 262 285 130 33 chr4 11393418 11393615 -190934732 - MIR SINE MIR -21 241 24 2420 85 3 0 chr4 11394205 11394512 -190933835 + AluSp SINE Alu 1 308 -5 207 119 34 17 chr4 11394874 11394933 -190933414 + (TA)n Simple_repeat Simple_repeat 1 60 0 348 315 0 9 chr4 11395345 11395456 -190932891 - MIR3 SINE MIR -16 192 83 230 269 127 52 chr4 11396920 11397054 -190931293 - MIR3 SINE MIR -30 178 35 658 282 6 6 chr4 11397591 11397754 -190930593 - MIR SINE MIR -8 254 92 375 320 133 49 chr4 11397777 11397980 -190930367 + L3 LINE CR1 1287 1506 -71 1140 218 10 95 chr4 11399092 11399491 -190928856 - MLT1A1 LTR MaLR 0 365 1 342 339 70 23 chr4 11399516 11399687 -190928660 - MIR SINE MIR -82 180 2 25 0 0 0 chr4 11400154 11400179 -190928168 + AT_rich Low_complexity Low_complexity 1 25 0 186 43 0 0 chr4 11400195 11400218 -190928129 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 389 216 54 61 chr4 11400862 11401010 -190927337 + MLT2C1 LTR ERVL 1 147 -250 * 509 206 8 53 chr4 11400908 11401039 -190927308 + MLT1F LTR MaLR 73 250 -404 28798 113 10 13 chr4 11401643 11406457 -190921890 - L1P3 LINE L1 -697 5457 658 1541 205 20 7 chr4 11406457 11406755 -190921592 - AluJb SINE Alu -10 302 1 205 343 14 0 chr4 11406950 11407023 -190921324 + MER5A DNA MER1_type 113 186 -3 349 329 136 28 chr4 11407071 11407284 -190921063 + MIR SINE MIR 16 251 -11 999 194 12 40 chr4 11407456 11407709 -190920638 + L1MA10 LINE L1 6079 6324 -10 190 237 51 17 chr4 11408519 11408578 -190919769 - MIR SINE MIR -94 168 108 228 35 0 0 chr4 11409698 11409727 -190918620 + (CA)n Simple_repeat Simple_repeat 2 30 0 * 261 0 0 0 chr4 11409726 11409755 -190918592 + (GA)n Simple_repeat Simple_repeat 2 30 0 1229 216 39 35 chr4 11410762 11411100 -190917247 + MLT1F LTR MaLR 204 542 0 207 306 49 49 chr4 11411126 11411270 -190917077 - MIR SINE MIR -29 233 90 2090 103 7 0 chr4 11411380 11411652 -190916695 + AluSg1 SINE Alu 1 274 -35 243 0 0 0 chr4 11411652 11411679 -190916668 + (TA)n Simple_repeat Simple_repeat 1 27 0 312 70 0 0 chr4 11411852 11411895 -190916452 + (TG)n Simple_repeat Simple_repeat 2 44 0 368 255 20 26 chr4 11412164 11412317 -190916030 - LTR16C LTR ERVL 0 491 340 1623 202 7 7 chr4 11412474 11412776 -190915571 - AluJo SINE Alu -10 302 1 216 0 0 0 chr4 11413565 11413589 -190914758 + (A)n Simple_repeat Simple_repeat 1 24 0 456 322 111 10 chr4 11413744 11413952 -190914395 + MIR SINE MIR 13 241 -21 1639 127 70 0 chr4 11414209 11414539 -190913808 - AluSx SINE Alu 0 312 30 187 273 18 18 chr4 11414666 11414721 -190913626 - L2 LINE L2 -17 3296 3242 254 242 0 0 chr4 11414745 11414807 -190913540 + MER4-int LTR ERV1 1103 1164 -5434 686 228 133 71 chr4 11414823 11415221 -190913126 - MLT1D LTR MaLR -3 464 33 180 97 0 0 chr4 11415251 11415282 -190913065 + (TCTCTG)n Simple_repeat Simple_repeat 2 32 0 329 212 0 10 chr4 11415282 11415381 -190912966 + (TA)n Simple_repeat Simple_repeat 2 99 0 1468 225 68 68 chr4 11416433 11416992 -190911355 + MER68 LTR ERV1 4 562 0 321 286 19 65 chr4 11417027 11417181 -190911166 - MIR SINE MIR -83 179 33 289 281 104 36 chr4 11418076 11418249 -190910098 - MIR SINE MIR -63 145 1 4104 108 22 3 chr4 11418354 11418985 -190909362 + L1PA14 LINE L1 5460 6102 -59 461 212 0 0 chr4 11419313 11419431 -190908916 + L1PA14 LINE L1 6044 6161 0 2071 142 7 3 chr4 11419462 11419764 -190908583 - AluSp SINE Alu -10 303 1 317 87 0 0 chr4 11420077 11420123 -190908224 - MADE1 DNA Mariner 0 80 35 30 83 0 0 chr4 11420123 11420195 -190908152 + AT_rich Low_complexity Low_complexity 1 72 0 242 346 29 0 chr4 11420300 11420404 -190907943 - MIR SINE MIR -21 241 135 40512 36 22 2 chr4 11420409 11426432 -190901915 - L1PA2 LINE L1 0 6155 13 1881 209 83 9 chr4 11426698 11427133 -190901214 - MLT1C LTR MaLR 0 467 1 864 285 13 4 chr4 11427144 11427372 -190900975 + MIR SINE MIR 16 245 -17 22 56 0 0 chr4 11427541 11427577 -190900770 + AT_rich Low_complexity Low_complexity 1 36 0 885 112 6 19 chr4 11427584 11427745 -190900602 + (GAAA)n Simple_repeat Simple_repeat 1 159 0 327 312 0 32 chr4 11427906 11427999 -190900348 + L2 LINE L2 3221 3310 -3 328 326 17 6 chr4 11428013 11428191 -190900156 + L1ME4a LINE L1 5597 5776 -345 1712 229 79 15 chr4 11428228 11428699 -190899648 + MLT1D LTR MaLR 5 505 0 357 269 168 19 chr4 11428933 11429141 -190899206 + L1ME4a LINE L1 5833 6071 -50 467 345 82 9 chr4 11429684 11429916 -190898431 + MIR SINE MIR 12 260 -2 2973 194 94 65 chr4 11430062 11430942 -190897405 - MER21A LTR ERV1 -25 906 1 29 0 0 0 chr4 11431440 11431469 -190896878 + AT_rich Low_complexity Low_complexity 1 29 0 315 274 100 58 chr4 11431746 11431936 -190896411 + MIR SINE MIR 52 249 -13 330 298 0 0 chr4 11432153 11432237 -190896110 + MIR SINE MIR 112 195 -67 340 273 62 31 chr4 11432751 11432879 -190895468 - L2 LINE L2 -1 3271 3140 284 224 86 0 chr4 11433004 11433062 -190895285 + L2 LINE L2 3146 3208 -64 211 239 15 45 chr4 11433175 11433242 -190895105 - MIR SINE MIR -168 94 30 391 336 98 46 chr4 11433350 11433898 -190894449 + L2 LINE L2 2399 2975 -339 589 292 60 23 chr4 11433929 11434145 -190894202 + MIR SINE MIR 15 238 -24 976 191 11 6 chr4 11434157 11434340 -190894007 + MER5A DNA MER1_type 6 189 0 464 319 47 13 chr4 11434518 11434826 -190893521 - L1ME LINE L1 -554 5593 5285 23 0 0 0 chr4 11434933 11434956 -190893391 + AT_rich Low_complexity Low_complexity 1 23 0 424 244 92 9 chr4 11434978 11435195 -190893152 - L1ME LINE L1 -2180 3949 3715 274 242 30 0 chr4 11435351 11435417 -190892930 + (CATATA)n Simple_repeat Simple_repeat 2 69 0 333 294 106 39 chr4 11435712 11435892 -190892455 - L1ME LINE L1 -3049 3080 2889 508 273 150 48 chr4 11435998 11436225 -190892122 + MIR SINE MIR 13 262 0 290 276 24 32 chr4 11436505 11436628 -190891719 - L1ME LINE L1 -5957 162 41 236 53 26 0 chr4 11436707 11436745 -190891602 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 4969 16 7 0 chr4 11436745 11437310 -190891037 - L1PA3 LINE L1 -13 6142 5574 4908 33 0 3 chr4 11437310 11437953 -190890394 + L1P LINE L1 3055 3695 -2451 300 188 0 0 chr4 11438163 11438232 -190890115 + (TA)n Simple_repeat Simple_repeat 2 70 0 281 277 0 0 chr4 11438328 11438393 -190889954 + GA-rich Low_complexity Low_complexity 1 65 0 1109 203 48 48 chr4 11438555 11438913 -190889434 - MLT1A1 LTR MaLR 0 428 3 714 250 19 0 chr4 11439066 11439226 -190889121 - MIR SINE MIR -87 175 13 252 338 39 0 chr4 11439232 11439309 -190889038 - MIR SINE MIR -171 91 12 22 35 0 0 chr4 11439551 11439580 -190888767 + AT_rich Low_complexity Low_complexity 1 29 0 218 200 0 0 chr4 11439629 11439669 -190888678 + MIR SINE MIR 104 143 -65 211 359 13 0 chr4 11439748 11439826 -190888521 - MIR SINE MIR -181 81 3 198 71 0 0 chr4 11439959 11439987 -190888360 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 23 0 0 0 chr4 11440012 11440035 -190888312 + AT_rich Low_complexity Low_complexity 1 23 0 1619 202 16 35 chr4 11440188 11440560 -190887787 + MLT1A1 LTR MaLR 1 365 0 1102 280 90 55 chr4 11440560 11441124 -190887223 + MLT1E LTR MaLR 4 591 -2 2214 91 46 0 chr4 11441372 11441657 -190886690 - AluY SINE Alu -13 298 1 2254 124 22 22 chr4 11441837 11442201 -190886146 + THE1B LTR MaLR 1 364 0 342 349 18 0 chr4 11442783 11442892 -190885455 - MIR SINE MIR -101 161 51 192 293 131 76 chr4 11443437 11443635 -190884712 + L2 LINE L2 3056 3264 -8 2032 133 14 0 chr4 11443651 11443936 -190884411 - AluSx SINE Alu -9 303 15 341 312 9 0 chr4 11444052 11444161 -190884186 - MIR SINE MIR -70 192 83 323 330 20 0 chr4 11444615 11444715 -190883632 - MIR SINE MIR -140 122 21 308 311 119 6 chr4 11445346 11445523 -190882824 + MIR SINE MIR 57 253 -9 218 237 0 17 chr4 11445792 11445851 -190882496 + (TAA)n Simple_repeat Simple_repeat 2 59 0 347 324 68 33 chr4 11446071 11446407 -190881940 - ERVL LTR ERVL -1312 4452 4105 1940 171 3 19 chr4 11447057 11447367 -190880980 - AluSx SINE Alu -7 305 1 330 71 0 295 chr4 11447810 11447869 -190880478 + MADE1 DNA Mariner 2 14 -66 2261 109 7 0 chr4 11447869 11448171 -190880176 - AluSg SINE Alu -6 304 1 330 71 0 295 chr4 11448171 11448223 -190880124 + MADE1 DNA Mariner 14 80 0 734 230 0 90 chr4 11448344 11448566 -190879781 + MER63A DNA MER1_type 3 204 -6 203 316 0 0 chr4 11449121 11449178 -190879169 - L2 LINE L2 0 3272 3216 2148 119 3 0 chr4 11451516 11451811 -190876536 + AluSx SINE Alu 3 298 -14 180 321 147 27 chr4 11451891 11452075 -190876272 + MIR SINE MIR 45 250 -12 2085 89 0 7 chr4 11452344 11452614 -190875733 + AluSp SINE Alu 39 306 -7 2079 39 0 4 chr4 11453031 11453310 -190875037 - L1PA5 LINE L1 -3574 2572 2295 * 17628 56 2 5 chr4 11453309 11456787 -190871560 + L1PA5 LINE L1 2599 6150 -4 454 272 8 0 chr4 11456881 11457006 -190871341 - MLT1J1 LTR MaLR -117 329 204 198 370 14 0 chr4 11457186 11457259 -190871088 + MIR SINE MIR 10 83 -179 473 320 66 5 chr4 11458604 11458917 -190869430 - L1MC/D LINE L1 -657 5585 5258 3690 182 92 1 chr4 11459032 11459789 -190868558 - LTR1B LTR ERV1 0 826 1 388 347 42 21 chr4 11460451 11460644 -190867703 - L2 LINE L2 -474 2840 2644 231 36 0 0 chr4 11461303 11461331 -190867016 + (CA)n Simple_repeat Simple_repeat 1 28 0 248 244 37 96 chr4 11461346 11461481 -190866866 + MIR SINE MIR 68 194 -68 1898 122 28 106 chr4 11462071 11462466 -190865881 + THE1B LTR MaLR 1 364 0 224 301 60 24 chr4 11462482 11462565 -190865782 + L2 LINE L2 2936 3021 -251 283 362 28 28 chr4 11462818 11462959 -190865388 - L2 LINE L2 -5 3267 3127 298 259 27 45 chr4 11462989 11463101 -190865246 + L2 LINE L2 3200 3309 -4 228 35 0 0 chr4 11463476 11463505 -190864842 + (CA)n Simple_repeat Simple_repeat 1 29 0 235 253 40 27 chr4 11464673 11464748 -190863599 - MIR SINE MIR -12 250 175 220 280 0 0 chr4 11465650 11465700 -190862647 - L2 LINE L2 -4 3268 3219 644 264 92 50 chr4 11465835 11466259 -190862088 - MLT1C LTR MaLR 0 467 14 494 300 32 16 chr4 11466446 11466636 -190861711 + MIR SINE MIR 22 214 -48 341 331 6 6 chr4 11467590 11467771 -190860576 + LTR33 LTR ERVL 322 502 -19 392 260 135 0 chr4 11469031 11469135 -190859212 + MIR SINE MIR 32 149 -113 229 270 27 0 chr4 11469598 11469672 -190858675 - MLT1H LTR MaLR -195 354 279 4119 212 58 8 chr4 11471556 11472527 -190855820 - MER45B DNA AcHobo -18 1022 4 437 331 32 50 chr4 11472567 11472773 -190855574 - MIR SINE MIR -39 223 15 5455 109 11 6 chr4 11473076 11473478 -190854869 - L1PA7 LINE L1 -63 6091 5692 1853 134 33 4 chr4 11473478 11473785 -190854562 + AluSq SINE Alu 1 315 0 5455 109 11 6 chr4 11473785 11474815 -190853532 - L1PA7 LINE L1 -462 5692 4656 290 200 11 84 chr4 11475061 11475083 -190853264 - MER94 DNA DNA -40 94 72 1852 171 26 0 chr4 11475083 11475387 -190852960 - AluSx SINE Alu 0 312 1 290 200 11 84 chr4 11475387 11475459 -190852888 - MER94 DNA DNA -62 72 7 496 234 16 40 chr4 11475518 11475642 -190852705 + L2 LINE L2 3193 3313 0 251 329 67 34 chr4 11475911 11476060 -190852287 - L2 LINE L2 -541 2773 2620 300 138 0 0 chr4 11476275 11476333 -190852014 + L1MA4 LINE L1 6237 6294 -6 2083 130 3 29 chr4 11478078 11478394 -190849953 + AluSx SINE Alu 1 308 -4 1654 168 11 4 chr4 11478598 11478872 -190849475 - AluJo SINE Alu -8 304 29 2019 156 0 0 chr4 11479277 11479572 -190848775 - AluSx SINE Alu -17 295 1 903 198 13 13 chr4 11479683 11479921 -190848426 - Ricksha DNA DNA -13 2841 2604 * 6524 155 26 21 chr4 11479920 11480584 -190847763 - Ricksha DNA DNA -290 2956 2280 204 40 0 0 chr4 11480584 11480609 -190847738 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 6524 155 26 21 chr4 11480609 11481204 -190847143 - Ricksha DNA DNA -966 2280 1690 322 47 0 0 chr4 11481203 11481246 -190847101 - Ricksha DNA DNA -969 285 243 * 266 121 0 69 chr4 11481246 11481261 -190847086 - ERVL LTR ERVL -68 5696 5643 267 229 0 0 chr4 11481266 11481336 -190847011 - Ricksha DNA DNA -1943 103 34 671 372 62 34 chr4 11481797 11482437 -190845910 + L2 LINE L2 2654 3313 0 193 313 0 47 chr4 11482541 11482605 -190845742 - MIR3 SINE MIR -142 66 6 2305 167 62 2 chr4 11482882 11483284 -190845063 - MSTB LTR MaLR 0 426 1 467 210 68 0 chr4 11483445 11483564 -190844783 + MIR SINE MIR 4 135 -73 272 259 172 52 chr4 11483576 11483692 -190844655 + MIR SINE MIR 111 240 -22 189 323 48 0 chr4 11483712 11483774 -190844573 + L2 LINE L2 3194 3258 -14 1841 182 41 51 chr4 11483810 11484278 -190844069 - MLT1C LTR MaLR -4 463 1 249 317 18 18 chr4 11484849 11485083 -190843264 + CT-rich Low_complexity Low_complexity 1 234 0 4018 205 26 5 chr4 11485136 11485981 -190842366 + MER6 DNA MER2_type 1 863 -2 529 100 22 0 chr4 11486181 11486271 -190842076 + (TCCCC)n Simple_repeat Simple_repeat 3 94 0 396 0 0 0 chr4 11486455 11486499 -190841848 + (TG)n Simple_repeat Simple_repeat 1 44 0 306 278 31 0 chr4 11486499 11486596 -190841751 - L1MC3 LINE L1 -1140 6645 6546 196 385 122 0 chr4 11488849 11489005 -190839342 + MIR SINE MIR 88 262 0 707 167 25 0 chr4 11490651 11490813 -190837534 + (TGGA)n Simple_repeat Simple_repeat 1 166 0 626 98 29 0 chr4 11491583 11491685 -190836662 + CT-rich Low_complexity Low_complexity 2 106 0 1200 73 17 0 chr4 11491688 11491865 -190836482 + (TTC)n Simple_repeat Simple_repeat 1 180 0 21 0 0 0 chr4 11492357 11492378 -190835969 + AT_rich Low_complexity Low_complexity 1 21 0 205 371 19 9 chr4 11492537 11492642 -190835705 - MER5C DNA MER1_type -200 124 19 1993 94 0 4 chr4 11493315 11493581 -190834766 + AluY SINE Alu 44 308 -3 286 301 104 43 chr4 11494089 11494139 -190834208 + LTR16B LTR ERVL 116 162 -302 1455 257 34 5 chr4 11494139 11494524 -190833823 + MSTD LTR MaLR 1 396 0 286 301 104 43 chr4 11494524 11494752 -190833595 + LTR16B LTR ERVL 162 411 -53 40517 37 21 2 chr4 11494771 11500803 -190827544 - L1PA3 LINE L1 -2 6153 3 2889 201 59 10 chr4 11501174 11501847 -190826500 - L1MCa LINE L1 -5690 736 31 434 349 30 20 chr4 11501859 11501997 -190826350 + HERV16 LTR ERVL 910 1045 -3951 1926 142 50 36 chr4 11501997 11502356 -190825991 - THE1B LTR MaLR 0 364 1 434 349 30 20 chr4 11502356 11502706 -190825641 + HERV16 LTR ERVL 1045 1429 -3567 2332 91 3 0 chr4 11502985 11503283 -190825064 - AluSq SINE Alu -14 299 1 1185 240 59 81 chr4 11503757 11504302 -190824045 - LTR55 LTR ERV -15 533 1 1166 140 96 19 chr4 11504786 11505057 -190823290 - L1MA9 LINE L1 -3 6309 6018 258 269 39 39 chr4 11506178 11506274 -190822073 - MIR SINE MIR -93 115 22 753 135 0 0 chr4 11507209 11507372 -190820975 + (GA)n Simple_repeat Simple_repeat 2 164 0 218 302 0 0 chr4 11507969 11508022 -190820325 + MIR SINE MIR 76 128 -134 1345 225 82 13 chr4 11510202 11510631 -190817716 + MER89 LTR ERV1 1 559 0 213 39 0 0 chr4 11510659 11510685 -190817662 + (CAA)n Simple_repeat Simple_repeat 2 27 0 300 27 0 0 chr4 11510900 11510937 -190817410 + (CA)n Simple_repeat Simple_repeat 2 38 0 281 319 54 54 chr4 11511552 11511718 -190816629 + MIR3 SINE MIR 30 195 -13 258 311 45 38 chr4 11512496 11512628 -190815719 + L2 LINE L2 2341 2473 -841 468 276 85 15 chr4 11512631 11512830 -190815517 - MLT1K LTR MaLR 0 588 376 215 431 26 0 chr4 11513100 11513253 -190815094 + L2 LINE L2 2476 2632 -682 2076 139 11 22 chr4 11513253 11513612 -190814735 + THE1A LTR MaLR 1 355 0 322 164 31 63 chr4 11514399 11514558 -190813789 + (TTATA)n Simple_repeat Simple_repeat 1 154 0 184 158 66 0 chr4 11514560 11514636 -190813711 + (TA)n Simple_repeat Simple_repeat 1 81 0 225 328 103 0 chr4 11515946 11516062 -190812285 - MIR SINE MIR -11 251 124 261 273 27 0 chr4 11516959 11517069 -190811278 + (TA)n Simple_repeat Simple_repeat 2 114 0 319 280 110 8 chr4 11517296 11517414 -190810933 - MIR SINE MIR -67 195 66 293 68 23 0 chr4 11517490 11517534 -190810813 + (CA)n Simple_repeat Simple_repeat 2 46 0 236 325 113 6 chr4 11518009 11518169 -190810178 - MIR SINE MIR -66 196 20 24 0 0 0 chr4 11518254 11518278 -190810069 + AT_rich Low_complexity Low_complexity 1 24 0 380 296 44 15 chr4 11518516 11518651 -190809696 + MIR SINE MIR 46 184 -78 357 317 49 40 chr4 11518647 11518851 -190809496 + MIR SINE MIR 11 217 -45 * 23650 31 0 2 chr4 11519317 11522962 -190805385 - L1PA2 LINE L1 0 6155 2517 2875 28 0 0 chr4 11522962 11523326 -190805021 + L1PA2 LINE L1 2151 2514 -3632 1774 171 55 24 chr4 11524227 11524690 -190803657 + MLT2A2 LTR ERVL 21 515 0 258 394 31 8 chr4 11526685 11526812 -190801535 + L2 LINE L2 3141 3270 -2 201 147 0 0 chr4 11526812 11526846 -190801501 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 21 0 0 0 chr4 11526942 11526963 -190801384 + AT_rich Low_complexity Low_complexity 1 21 0 386 367 0 43 chr4 11527729 11527939 -190800408 + MIR SINE MIR 20 220 -42 351 279 49 25 chr4 11527993 11528115 -190800232 + MIR SINE MIR 74 198 -64 241 224 239 0 chr4 11528115 11528182 -190800165 + Tigger3(Golem) DNA MER2_type 1 83 -2946 1469 144 46 25 chr4 11528200 11528484 -190799863 + Tigger3(Golem) DNA MER2_type 2738 3027 -2 2234 128 0 0 chr4 11528485 11528791 -190799556 + AluY SINE Alu 1 306 -5 229 250 119 0 chr4 11528871 11528955 -190799392 + MIR SINE MIR 108 201 -61 204 292 50 83 chr4 11529499 11529619 -190798728 + MIR SINE MIR 34 149 -113 2107 107 0 27 chr4 11530288 11530588 -190797759 - AluSx SINE Alu -20 292 1 3756 191 38 24 chr4 11530659 11531441 -190796906 + MER54B LTR ERVL 1 793 0 197 366 0 32 chr4 11531619 11531712 -190796635 + L3 LINE CR1 1254 1343 -234 1014 269 32 19 chr4 11532120 11532429 -190795918 + L2 LINE L2 3001 3313 0 1707 215 10 43 chr4 11533166 11533580 -190794767 + MLT1B-int LTR MaLR 1335 1734 -1 1143 199 48 57 chr4 11533610 11533962 -190794385 + MLT1B LTR MaLR 42 390 0 296 331 14 36 chr4 11534371 11534510 -190793837 + MIR SINE MIR 34 169 -93 187 273 91 55 chr4 11534574 11534684 -190793663 + L2 LINE L2 3156 3269 -3 21 36 0 0 chr4 11535047 11535075 -190793272 + AT_rich Low_complexity Low_complexity 1 28 0 1084 235 73 32 chr4 11535508 11535677 -190792670 - MLT1A2 LTR MaLR -19 355 194 381 43 0 0 chr4 11535677 11535724 -190792623 + (GA)n Simple_repeat Simple_repeat 2 48 0 1084 235 73 32 chr4 11535724 11535895 -190792452 - MLT1A2 LTR MaLR -180 194 1 771 259 14 9 chr4 11536128 11536340 -190792007 + MER20 DNA MER1_type 6 218 -1 302 283 142 9 chr4 11536599 11536712 -190791635 - MIR3 SINE MIR -67 141 14 201 195 0 0 chr4 11536712 11536753 -190791594 + T-rich Low_complexity Low_complexity 1 41 0 324 284 53 0 chr4 11536971 11537066 -190791281 + MIR SINE MIR 75 174 -88 368 169 0 0 chr4 11537202 11537261 -190791086 + Tigger3(Golem) DNA MER2_type 2 60 -2969 306 345 83 13 chr4 11537730 11537959 -190790388 - L1MEc LINE L1 -4884 1512 1268 239 113 84 56 chr4 11539011 11539082 -190789265 + (TTAAA)n Simple_repeat Simple_repeat 1 73 0 519 156 16 31 chr4 11539872 11540000 -190788347 + CT-rich Low_complexity Low_complexity 1 126 0 1995 199 14 7 chr4 11540341 11540773 -190787574 + L1MA9 LINE L1 5498 5932 -380 962 185 0 0 chr4 11540787 11541134 -190787213 + AluSp SINE Alu 137 313 0 1461 205 33 3 chr4 11541160 11541491 -190786856 + L1MA9 LINE L1 5936 6276 -36 2492 149 29 5 chr4 11541515 11541930 -190786417 + MSTA LTR MaLR 1 425 -3 298 218 100 65 chr4 11543208 11543378 -190784969 + MIR SINE MIR 35 210 -52 796 323 52 17 chr4 11543453 11543815 -190784532 + LTR16C LTR ERVL 6 380 -111 231 368 61 9 chr4 11545386 11545500 -190782847 + MIR3 SINE MIR 5 124 -84 530 174 55 0 chr4 11545684 11545793 -190782554 - Tigger3(Golem) DNA MER2_type -1 3028 2914 1670 160 38 107 chr4 11545793 11546371 -190781976 - MLT2A2 LTR ERVL 0 554 1 1986 137 31 28 chr4 11546375 11546762 -190781585 - Tigger3(Golem) DNA MER2_type -112 2917 2530 244 27 0 0 chr4 11546867 11546904 -190781443 + L1PA2 LINE L1 6113 6149 -6 212 311 14 14 chr4 11547187 11547261 -190781086 + L2 LINE L2 3230 3303 -10 732 229 42 67 chr4 11547316 11548224 -190780123 + L1MC4a LINE L1 6441 7492 -316 424 114 0 0 chr4 11548224 11548294 -190780053 - L1MA4A LINE L1 -383 5919 5850 1842 139 26 23 chr4 11548295 11548647 -190779700 + L1MA4A LINE L1 5947 6299 -4 319 283 0 0 chr4 11548648 11548754 -190779593 + L1MC4 LINE L1 7565 7670 -372 1341 188 0 27 chr4 11548830 11549091 -190779256 - AluJo SINE Alu -14 298 45 301 288 192 0 chr4 11549091 11549216 -190779131 + L1MC4 LINE L1 7761 7909 -133 277 274 14 0 chr4 11549292 11549365 -190778982 + GA-rich Low_complexity Low_complexity 3 76 0 190 207 17 52 chr4 11549714 11549772 -190778575 + L3 LINE CR1 1245 1300 -277 191 36 36 0 chr4 11550318 11550346 -190778001 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 433 311 61 5 chr4 11550501 11550697 -190777650 - MIR SINE MIR -8 254 48 457 157 0 0 chr4 11550697 11550767 -190777580 + LTR42 LTR ERVL 72 141 -354 296 82 0 20 chr4 11551697 11551746 -190776601 + (CA)n Simple_repeat Simple_repeat 2 49 0 394 299 52 13 chr4 11551792 11551946 -190776401 + MIR SINE MIR 1 160 -102 2217 177 8 88 chr4 11551946 11552477 -190775870 + LTR42 LTR ERVL 1 488 -7 182 274 0 0 chr4 11552504 11552555 -190775792 + MIR SINE MIR 188 238 -24 1964 209 8 8 chr4 11552675 11553058 -190775289 + MLT1B LTR MaLR 8 390 0 2214 102 7 3 chr4 11553260 11553553 -190774794 + AluSc SINE Alu 1 294 -15 701 301 102 13 chr4 11553871 11554508 -190773839 - L1ME3 LINE L1 -265 5897 5198 311 302 101 17 chr4 11554608 11554787 -190773560 - L1ME3 LINE L1 -949 5197 5004 5575 163 12 6 chr4 11555386 11556424 -190771923 - L1MC1 LINE L1 -1 6332 5288 349 295 199 14 chr4 11557168 11557449 -190770898 - LTR33A LTR ERVL -53 470 138 1398 277 30 6 chr4 11557645 11558114 -190770233 - L1ME3 LINE L1 -11 6151 5672 261 246 15 0 chr4 11558114 11558179 -190770168 - LTR16A LTR ERVL 0 450 385 464 306 59 13 chr4 11558214 11558603 -190769744 - L1ME3 LINE L1 -2546 3600 3194 296 293 112 9 chr4 11558821 11558937 -190769410 + MIR SINE MIR 132 259 -3 237 258 73 44 chr4 11559191 11559442 -190768905 - L1ME LINE L1 -335 5786 5525 22 35 0 0 chr4 11559578 11559607 -190768740 + AT_rich Low_complexity Low_complexity 1 29 0 1170 297 63 20 chr4 11559973 11560760 -190767587 + L1M4 LINE L1 3597 4417 -1729 2213 140 8 36 chr4 11561427 11561813 -190766534 - THE1C LTR MaLR 0 375 1 337 320 133 7 chr4 11562756 11562906 -190765441 + MIR3 SINE MIR 39 207 -1 912 175 38 0 chr4 11563140 11563300 -190765047 + FAM SINE Alu 1 166 -9 23 33 0 0 chr4 11563867 11563897 -190764450 + AT_rich Low_complexity Low_complexity 1 30 0 242 268 42 28 chr4 11564142 11564213 -190764134 + MIR SINE MIR 41 112 -150 258 339 102 57 chr4 11564424 11564778 -190763569 + L3 LINE CR1 168 537 -1040 496 270 98 16 chr4 11564817 11565008 -190763339 - MIR SINE MIR -26 236 36 1326 199 73 3 chr4 11565089 11565416 -190762931 + MLT1C LTR MaLR 5 354 -113 2026 130 3 7 chr4 11565517 11565832 -190762515 + AluSx SINE Alu 7 312 0 2865 209 3 12 chr4 11565865 11566445 -190761902 + Tigger7 DNA MER2_type 1 575 -158 2163 127 0 0 chr4 11566446 11566738 -190761609 - AluSx SINE Alu -20 292 1 1024 154 29 0 chr4 11566741 11566949 -190761398 + Tigger7 DNA MER2_type 2272 2485 -2 274 366 20 0 chr4 11567196 11567297 -190761050 + L3 LINE CR1 968 1070 -507 302 325 77 22 chr4 11567722 11567996 -190760351 + MLT1L LTR MaLR 317 605 -10 241 334 94 48 chr4 11568055 11568447 -190759900 + L3 LINE CR1 1121 1530 -47 1708 171 40 40 chr4 11568479 11568854 -190759493 - THE1C LTR MaLR 0 375 1 252 0 0 0 chr4 11568995 11569023 -190759324 + (A)n Simple_repeat Simple_repeat 1 28 0 189 0 0 0 chr4 11569337 11569358 -190758989 + (A)n Simple_repeat Simple_repeat 1 21 0 454 176 0 11 chr4 11569481 11569572 -190758775 - MSTA LTR MaLR -338 90 1 252 0 0 0 chr4 11569714 11569742 -190758605 + (A)n Simple_repeat Simple_repeat 1 28 0 277 353 0 0 chr4 11570987 11571089 -190757258 + MIR SINE MIR 51 152 -110 657 193 64 70 chr4 11571318 11571489 -190756858 + MIR SINE MIR 36 205 -57 1698 181 101 16 chr4 11571495 11571882 -190756465 + MER52C LTR ERV1 28 447 -831 1104 131 11 21 chr4 11571873 11572064 -190756283 + MSTA LTR MaLR 236 424 -4 * 247 277 0 0 chr4 11572208 11572273 -190756074 - L2 LINE L2 -217 3055 2991 272 216 98 98 chr4 11572336 11572489 -190755858 + MIR SINE MIR 53 205 -57 257 274 37 89 chr4 11573928 11574198 -190754149 - L1ME LINE L1 -562 5602 5347 304 326 0 0 chr4 11574352 11574450 -190753897 - L1ME LINE L1 -1019 5127 5030 1042 175 5 37 chr4 11574717 11574934 -190753413 - MER20 DNA MER1_type -7 212 3 195 340 68 0 chr4 11574947 11575050 -190753297 + MIR SINE MIR 146 255 -7 393 288 88 33 chr4 11575882 11576097 -190752250 + MIR SINE MIR 18 244 -18 273 208 119 99 chr4 11578045 11578146 -190750201 + L2 LINE L2 3170 3272 0 472 256 36 26 chr4 11578189 11578384 -190749963 - LTR16B LTR ERVL 0 464 268 327 313 93 21 chr4 11578562 11578853 -190749494 - LTR16B LTR ERVL -136 328 17 732 316 40 40 chr4 11578947 11579520 -190748827 - HERV16 LTR ERVL -3049 1947 1428 629 338 31 13 chr4 11579731 11580048 -190748299 - HERV16 LTR ERVL -3932 1064 742 253 306 0 0 chr4 11580325 11580387 -190747960 - HERV16 LTR ERVL -4569 427 366 975 306 34 11 chr4 11580723 11581167 -190747180 - LTR16B LTR ERVL -3 461 8 237 382 39 17 chr4 11581637 11581815 -190746532 - MIR SINE MIR -13 249 68 1113 214 9 9 chr4 11581950 11582174 -190746173 - MER58A DNA MER1_type 0 224 1 247 309 43 53 chr4 11582212 11582306 -190746041 - MIR SINE MIR -83 125 33 698 269 29 14 chr4 11582814 11583022 -190745325 - MLT1A1 LTR MaLR -154 211 1 310 274 75 57 chr4 11583459 11583565 -190744782 + L2 LINE L2 3160 3267 -5 422 359 6 13 chr4 11583865 11584024 -190744323 - MIR SINE MIR -75 187 30 252 149 0 0 chr4 11584024 11584071 -190744276 + (TA)n Simple_repeat Simple_repeat 2 48 0 1902 138 0 0 chr4 11584853 11585121 -190743226 - AluSx SINE Alu -44 268 1 795 87 0 0 chr4 11585797 11585901 -190742446 + AluSg/x SINE Alu 199 302 -8 454 345 84 4 chr4 11587458 11587696 -190740651 + MIR SINE MIR 6 262 0 200 398 0 10 chr4 11587702 11587800 -190740547 - MIR SINE MIR -68 140 44 257 308 133 17 chr4 11588274 11588394 -190739953 + L2 LINE L2 2586 2719 -595 320 62 0 21 chr4 11588428 11588476 -190739871 + (TCCCC)n Simple_repeat Simple_repeat 2 48 0 43493 35 21 3 chr4 11588523 11594516 -190733831 + L1PA2 LINE L1 1 6105 -50 8130 217 42 52 chr4 11594616 11595787 -190732560 + Cheshire DNA MER1_type 190 1371 -1049 274 58 58 0 chr4 11595787 11595839 -190732508 + T-rich Low_complexity Low_complexity 5 59 0 8130 217 42 52 chr4 11595839 11596366 -190731981 + Cheshire DNA MER1_type 1371 1901 -519 7097 71 4 6 chr4 11596366 11597991 -190730356 - L1PA7 LINE L1 -3 6151 4504 1603 212 0 10 chr4 11597991 11598288 -190730059 - AluJo SINE Alu -17 295 2 8130 217 42 52 chr4 11598288 11598813 -190729534 + Cheshire DNA MER1_type 1899 2394 -26 264 272 213 13 chr4 11598842 11599081 -190729266 + L1MC4 LINE L1 7755 8041 -1 328 245 93 78 chr4 11599142 11599346 -190729001 + L2 LINE L2 3106 3312 -1 227 380 53 9 chr4 11599818 11599931 -190728416 - MIR SINE MIR -98 164 47 2334 98 7 0 chr4 11600336 11600642 -190727705 + AluSc SINE Alu 1 308 -1 578 241 247 26 chr4 11600724 11601068 -190727279 + L2 LINE L2 2875 3294 -19 180 331 78 39 chr4 11603972 11604126 -190724221 + L2 LINE L2 1542 1701 -1613 511 157 19 0 chr4 11604153 11604261 -190724086 + GA-rich Low_complexity Low_complexity 1 110 0 1236 243 73 9 chr4 11605070 11605412 -190722935 - MLT2D LTR ERVL -50 364 1 885 255 21 29 chr4 11605628 11605871 -190722476 + MIR SINE MIR 1 241 -21 985 263 0 40 chr4 11607374 11607674 -190720673 - MLT1B LTR MaLR -8 382 95 245 270 16 0 chr4 11607730 11607793 -190720554 - L1MCa LINE L1 -6360 66 3 211 279 139 0 chr4 11607826 11607912 -190720435 + L2 LINE L2 3194 3291 -22 542 230 68 110 chr4 11608126 11608398 -190719949 - L1 LINE L1 -827 5319 5060 2528 58 0 3 chr4 11608398 11608707 -190719640 + AluY SINE Alu 1 308 -3 542 230 68 110 chr4 11608707 11608743 -190719604 - L1 LINE L1 -1086 5060 5024 4144 173 53 17 chr4 11608744 11609010 -190719337 + L1MB1 LINE L1 5328 5583 -585 1330 172 118 8 chr4 11609010 11609272 -190719075 + AluSx SINE Alu 1 291 -21 4144 173 53 17 chr4 11609272 11609813 -190718534 + L1MB1 LINE L1 5583 6164 -4 255 245 0 0 chr4 11609853 11609902 -190718445 + MER58A DNA MER1_type 31 79 -28 1967 125 26 42 chr4 11611211 11611394 -190716953 - AluSx SINE Alu -5 307 130 2625 36 0 0 chr4 11611394 11611695 -190716652 - AluY SINE Alu -10 301 1 1967 125 26 42 chr4 11611695 11611823 -190716524 - AluSx SINE Alu -182 130 1 33 0 0 0 chr4 11612431 11612464 -190715883 + AT_rich Low_complexity Low_complexity 1 33 0 435 314 22 84 chr4 11612651 11613021 -190715326 + ERVL LTR ERVL 5034 5380 -384 203 319 0 0 chr4 11613074 11613143 -190715204 + (CATATA)n Simple_repeat Simple_repeat 3 71 0 202 157 20 20 chr4 11613441 11613492 -190714855 + GA-rich Low_complexity Low_complexity 5 55 0 1829 200 72 15 chr4 11613699 11614159 -190714188 - L1MA9 LINE L1 -38 6274 5789 363 239 70 92 chr4 11614024 11614475 -190713872 - L1PB3 LINE L1 -230 5907 857 * 351 239 46 77 chr4 11614547 11614677 -190713670 + L2 LINE L2 3179 3304 -9 571 305 187 40 chr4 11614688 11615271 -190713076 - L1MEd LINE L1 -5389 730 62 439 179 205 46 chr4 11615371 11615522 -190712825 - HAL1 LINE L1 -1 2506 2332 251 254 79 74 chr4 11615772 11615961 -190712386 - Tigger1 DNA MER2_type -1374 1044 855 2359 288 118 45 chr4 11616644 11618337 -190710010 - HAL1 LINE L1 -591 1916 101 493 295 40 12 chr4 11618828 11619001 -190709346 - MER91B DNA MER1_type -12 178 1 321 89 0 0 chr4 11620047 11620092 -190708255 + (TCTA)n Simple_repeat Simple_repeat 4 48 0 1680 190 7 0 chr4 11620092 11620371 -190707976 - AluJo SINE Alu -30 282 2 189 0 0 0 chr4 11621201 11621222 -190707125 + (TA)n Simple_repeat Simple_repeat 1 21 0 1852 176 48 38 chr4 11621655 11622210 -190706137 - MLT2A2 LTR ERVL 0 554 1 1976 176 0 97 chr4 11622465 11622897 -190705450 - MLT1B LTR MaLR 0 390 1 657 320 85 9 chr4 11623406 11623878 -190704469 + L2 LINE L2 2626 3123 -190 198 250 213 25 chr4 11624053 11624133 -190704214 - L2 LINE L2 0 3272 3178 375 333 38 25 chr4 11624244 11624484 -190703863 - MIR SINE MIR 0 262 20 469 369 48 34 chr4 11624600 11625064 -190703283 - L2 LINE L2 -78 3235 2767 562 300 53 37 chr4 11625087 11625410 -190702937 - L2 LINE L2 -660 2654 2327 914 292 72 57 chr4 11625420 11625933 -190702414 + LTR33 LTR ERVL 1 521 0 2505 74 0 0 chr4 11627044 11627355 -190700992 - AluY SINE Alu 0 311 1 273 357 18 53 chr4 11627444 11627615 -190700732 - MIR3 SINE MIR -6 202 38 481 264 170 13 chr4 11627691 11627850 -190700497 - MER5A DNA MER1_type -2 187 4 257 113 338 0 chr4 11628620 11628691 -190699656 + HSAT4 Satellite centromeric 1 95 -10 248 82 328 0 chr4 11628745 11628806 -190699541 + HSAT4 Satellite centromeric 1 81 -24 225 127 338 0 chr4 11629095 11629166 -190699181 + HSAT4 Satellite centromeric 1 95 -10 268 99 338 0 chr4 11629245 11629316 -190699031 + HSAT4 Satellite centromeric 1 95 -10 252 375 36 12 chr4 11629784 11629952 -190698395 + MIR SINE MIR 21 192 -70 230 342 128 0 chr4 11631000 11631149 -190697198 + L2 LINE L2 2619 2786 -528 228 344 0 0 chr4 11631460 11631524 -190696823 + MIR SINE MIR 76 139 -123 182 273 82 27 chr4 11631950 11632060 -190696287 + MIR SINE MIR 74 189 -73 21 0 0 0 chr4 11632131 11632152 -190696195 + AT_rich Low_complexity Low_complexity 1 21 0 475 179 15 123 chr4 11632747 11632942 -190695405 + MER96B DNA MER1_type? 244 417 0 2226 143 25 27 chr4 11633063 11633428 -190694919 - THE1B LTR MaLR 0 364 1 10716 111 6 27 chr4 11633428 11635042 -190693305 - THE1B-int LTR MaLR 0 1580 1 2035 128 22 38 chr4 11635044 11635412 -190692935 - THE1B LTR MaLR -2 362 1 231 146 24 0 chr4 11635485 11635526 -190692821 + L2 LINE L2 3270 3311 -2 344 132 0 0 chr4 11635712 11635765 -190692582 - MER53 DNA DNA 0 189 137 299 212 6 18 chr4 11635922 11636092 -190692255 + (TA)n Simple_repeat Simple_repeat 2 169 0 285 202 9 18 chr4 11636175 11636289 -190692058 + (TA)n Simple_repeat Simple_repeat 2 114 0 1513 191 75 0 chr4 11636297 11636616 -190691731 - MER2 DNA MER2_type 0 344 2 504 158 44 18 chr4 11636619 11636733 -190691614 - MER53 DNA DNA -72 117 1 328 188 59 40 chr4 11636921 11637022 -190691325 - MER94 DNA DNA -30 104 2 274 315 131 40 chr4 11637327 11637549 -190690798 + L2 LINE L2 3030 3271 -1 623 230 25 77 chr4 11638099 11638331 -190690016 - MIR SINE MIR -2 260 45 441 313 31 18 chr4 11638403 11638566 -190689781 - MIR SINE MIR -76 186 22 188 356 35 0 chr4 11638628 11638715 -190689632 + MIR3 SINE MIR 118 207 -1 451 312 43 29 chr4 11638894 11639032 -190689315 - L2 LINE L2 0 3272 3133 206 284 0 81 chr4 11639261 11639335 -190689012 - L2 LINE L2 -494 2820 2753 237 218 18 0 chr4 11639377 11639432 -190688915 + MIR SINE MIR 71 126 -136 1452 197 12 4 chr4 11639718 11639977 -190688370 + AluJo SINE Alu 1 261 -51 192 326 0 0 chr4 11640781 11640827 -190687520 - MIR SINE MIR -62 146 101 438 225 79 0 chr4 11641269 11641358 -190686989 + MER5A DNA MER1_type 14 109 -80 1230 219 139 39 chr4 11641425 11641785 -190686562 + MSTD LTR MaLR 1 396 0 213 311 162 20 chr4 11641792 11641940 -190686407 + MER5A DNA MER1_type 7 175 -14 210 250 0 0 chr4 11642381 11642485 -190685862 + (CA)n Simple_repeat Simple_repeat 1 104 0 202 305 17 17 chr4 11642668 11642727 -190685620 + MIR SINE MIR 95 153 -55 * 214 214 0 0 chr4 11642722 11642764 -190685583 + L2 LINE L2 3267 3308 -5 274 320 72 24 chr4 11643026 11643151 -190685196 - L2 LINE L2 0 3272 3142 225 184 0 0 chr4 11643415 11643453 -190684894 - MLT1I LTR MaLR -274 135 98 254 302 0 0 chr4 11643767 11643830 -190684517 + L2 LINE L2 3210 3272 0 287 292 138 23 chr4 11643951 11644081 -190684266 + L2 LINE L2 3118 3262 -10 426 342 53 25 chr4 11644294 11644873 -190683474 + L1ME2 LINE L1 5263 5867 -297 215 323 132 32 chr4 11645650 11645879 -190682468 + MIR3 SINE MIR 5 262 0 21 0 0 0 chr4 11647322 11647343 -190681004 + AT_rich Low_complexity Low_complexity 1 21 0 1783 162 0 4 chr4 11647349 11647648 -190680699 + AluSx SINE Alu 14 311 0 990 249 69 69 chr4 11647742 11648132 -190680215 + MLT1B LTR MaLR 1 390 0 2260 240 47 39 chr4 11648133 11648899 -190679448 - L1ME2 LINE L1 -22 6142 5371 808 290 116 28 chr4 11648915 11649759 -190678588 - L1ME2 LINE L1 -845 5301 4384 2198 273 89 34 chr4 11649882 11651184 -190677163 - L1ME2 LINE L1 -2098 4048 2675 33 0 0 0 chr4 11651562 11651595 -190676752 + AT_rich Low_complexity Low_complexity 1 33 0 317 325 77 36 chr4 11651857 11652051 -190676296 - MIR SINE MIR 0 262 61 576 43 0 0 chr4 11652565 11652634 -190675713 - LTR12 LTR ERV1 0 714 646 337 231 11 0 chr4 11652637 11652728 -190675619 + LTR30 LTR ERV1 552 643 -79 679 122 9 9 chr4 11652730 11652845 -190675502 + LTR12 LTR ERV1 482 596 -118 211 351 46 30 chr4 11652964 11653095 -190675252 + MIR SINE MIR 16 148 -114 1177 258 185 6 chr4 11653590 11654077 -190674270 - MLT1F1 LTR MaLR 0 567 1 798 264 95 20 chr4 11654330 11654678 -190673669 - L1ME4a LINE L1 -15 6106 5733 599 200 32 0 chr4 11655166 11655291 -190673056 + MER94 DNA DNA 1 129 -5 289 185 41 14 chr4 11655539 11655685 -190672662 + (TA)n Simple_repeat Simple_repeat 2 151 0 659 355 47 17 chr4 11656095 11656394 -190671953 + L1MA6 LINE L1 395 702 -6147 3474 245 50 46 chr4 11656622 11658177 -190670170 + L1MA6 LINE L1 1345 2892 -3956 2866 10 0 0 chr4 11658177 11658487 -190669860 - AluY SINE Alu -1 310 1 3474 245 50 46 chr4 11658487 11658732 -190669615 + L1MA6 LINE L1 2892 3155 -3693 672 115 0 0 chr4 11658732 11658836 -190669511 + (TA)n Simple_repeat Simple_repeat 1 104 0 3474 245 50 46 chr4 11658836 11658874 -190669473 + L1MA6 LINE L1 3155 3191 -3657 3055 202 17 17 chr4 11658870 11659959 -190668388 + L1MA6 LINE L1 5287 6370 -632 * 2432 194 11 11 chr4 11659969 11660417 -190667930 + L1MA3 LINE L1 16 463 -7102 608 140 11 0 chr4 11660419 11660512 -190667835 - AluSg SINE Alu -216 94 1 806 154 12 12 chr4 11660512 11660674 -190667673 + L1MA3 LINE L1 5631 5792 -1773 3126 123 18 22 chr4 11660674 11661221 -190667126 + L1MA3 LINE L1 7175 7724 0 2374 192 42 32 chr4 11661228 11661826 -190666521 + L1MA6 LINE L1 6399 7002 0 523 327 145 21 chr4 11662129 11662563 -190665784 - L3 LINE CR1 -824 753 266 26 0 0 0 chr4 11662661 11662687 -190665660 + AT_rich Low_complexity Low_complexity 1 26 0 2223 102 0 13 chr4 11663152 11663465 -190664882 - AluSc SINE Alu 0 309 1 188 377 44 50 chr4 11664587 11664746 -190663601 - MIR SINE MIR -80 182 25 1291 312 11 21 chr4 11665257 11665693 -190662654 - LTR16A LTR ERVL 0 450 19 849 156 172 11 chr4 11666369 11666549 -190661798 + MER4B LTR ERV1 1 209 -401 2358 243 39 15 chr4 11666552 11666895 -190661452 + L1MC/D LINE L1 3791 4124 -2022 6240 93 14 11 chr4 11666895 11668674 -190659673 + L1PA8 LINE L1 4359 6172 0 2358 243 39 15 chr4 11668674 11669134 -190659213 + L1MC/D LINE L1 4124 4613 -1533 246 235 12 0 chr4 11669134 11669215 -190659132 + (TA)n Simple_repeat Simple_repeat 2 83 0 445 194 112 8 chr4 11669217 11669351 -190658996 + L1MC/D LINE L1 4626 4773 -1373 2203 121 0 0 chr4 11669352 11669659 -190658688 + AluSx SINE Alu 3 309 -3 1069 253 54 0 chr4 11669679 11669976 -190658371 - MER58B DNA MER1_type -1 340 28 589 240 43 43 chr4 11670018 11670124 -190658223 + L1MC/D LINE L1 4827 4932 -1214 1583 115 0 0 chr4 11670124 11670342 -190658005 + AluSg/x SINE Alu 87 304 -8 589 240 43 43 chr4 11670342 11670489 -190657858 + L1MC/D LINE L1 4931 5080 -1066 335 180 104 17 chr4 11670523 11670612 -190657735 + L1MC/D LINE L1 5468 5561 -681 1393 266 96 29 chr4 11670620 11671213 -190657134 + L1ME1 LINE L1 5505 6137 -29 1046 314 109 14 chr4 11671279 11671840 -190656507 - L2 LINE L2 -1148 2166 1553 361 359 31 8 chr4 11672789 11672917 -190655430 - MIR SINE MIR -62 146 16 262 325 94 0 chr4 11673233 11673350 -190654997 + MIR SINE MIR 57 184 -78 213 231 0 0 chr4 11673423 11673462 -190654885 + (CATATA)n Simple_repeat Simple_repeat 1 39 0 192 179 0 0 chr4 11673636 11673675 -190654672 + (CA)n Simple_repeat Simple_repeat 1 39 0 2465 186 9 17 chr4 11674507 11674974 -190653373 + MLT1C LTR MaLR 1 463 -4 246 357 10 10 chr4 11675042 11675140 -190653207 + MIR SINE MIR 8 105 -157 242 355 116 6 chr4 11675167 11675339 -190653008 + MIR SINE MIR 10 200 -62 207 100 0 0 chr4 11675721 11675751 -190652596 + (TGAA)n Simple_repeat Simple_repeat 4 33 0 249 273 110 65 chr4 11675992 11676146 -190652201 - MIR SINE MIR -54 208 48 254 284 125 51 chr4 11676457 11676633 -190651714 + MIR SINE MIR 59 247 -15 216 0 0 0 chr4 11677496 11677520 -190650827 + (TG)n Simple_repeat Simple_repeat 2 25 0 344 366 43 26 chr4 11677888 11678120 -190650227 + L2 LINE L2 2617 2852 -462 387 0 0 0 chr4 11678747 11678790 -190649557 + (GA)n Simple_repeat Simple_repeat 2 44 0 232 306 125 44 chr4 11679202 11679450 -190648897 - L2 LINE L2 -1 3312 3045 261 287 72 20 chr4 11679746 11679853 -190648494 - MIR SINE MIR -63 145 54 912 255 0 0 chr4 11679853 11680053 -190648294 + MER58A DNA MER1_type 1 200 -24 23 33 0 0 chr4 11680297 11680327 -190648020 + AT_rich Low_complexity Low_complexity 1 30 0 822 40 0 0 chr4 11680449 11680548 -190647799 - L1P LINE L1 -1275 4871 4773 6791 14 18 0 chr4 11680548 11681331 -190647016 + L1PA2 LINE L1 5355 6151 -4 692 310 147 31 chr4 11681586 11682063 -190646284 - MLT1G1 LTR MaLR -3 592 61 257 292 12 0 chr4 11683238 11683337 -190645010 - MLT-int LTR MaLR -1229 142 43 719 276 109 23 chr4 11683459 11683724 -190644623 - MLT1G3 LTR MaLR -217 313 26 1080 334 55 27 chr4 11683889 11684523 -190643824 + MLT2F LTR ERVL 8 659 -4 21 0 0 0 chr4 11684543 11684564 -190643783 + AT_rich Low_complexity Low_complexity 1 21 0 313 315 77 8 chr4 11685172 11685302 -190643045 + MIR SINE MIR 47 185 -77 27 62 0 0 chr4 11685319 11685367 -190642980 + AT_rich Low_complexity Low_complexity 1 48 0 420 292 58 43 chr4 11686330 11686488 -190641859 + MIR3 SINE MIR 33 193 -15 4573 199 52 21 chr4 11687566 11688953 -190639394 - L1MC2 LINE L1 -13 6331 4912 1155 189 0 14 chr4 11688954 11689171 -190639176 - AluJo SINE Alu -4 308 95 231 326 31 20 chr4 11689538 11689636 -190638711 - L2 LINE L2 0 3313 3215 2453 109 8 16 chr4 11690075 11690442 -190637905 + THE1B LTR MaLR 1 364 0 259 330 35 17 chr4 11690650 11690765 -190637582 - MIR SINE MIR -138 124 8 749 264 52 62 chr4 11690988 11691295 -190637052 + LTR16C LTR ERVL 180 483 -8 203 300 78 11 chr4 11692376 11692466 -190635881 + MIR SINE MIR 100 195 -67 224 232 0 0 chr4 11693506 11693562 -190634785 + A-rich Low_complexity Low_complexity 1 56 0 225 0 0 0 chr4 11693671 11693696 -190634651 + (A)n Simple_repeat Simple_repeat 1 25 0 218 295 13 0 chr4 11693921 11693999 -190634348 + (TA)n Simple_repeat Simple_repeat 2 80 0 520 288 130 45 chr4 11695771 11696240 -190632107 + MLT1H LTR MaLR 13 521 -28 312 311 57 83 chr4 11697307 11697657 -190630690 + L1MEd LINE L1 54 394 -5725 325 262 86 0 chr4 11697928 11698044 -190630303 + L1ME LINE L1 5269 5395 -751 770 163 7 22 chr4 11698137 11698272 -190630075 + AluJ SINE Alu 1 133 -169 2489 113 51 0 chr4 11698272 11698889 -190629458 - L1PA8 LINE L1 -534 5597 4953 3842 97 5 7 chr4 11698889 11699443 -190628904 + L1PA8 LINE L1 5610 6165 -7 785 229 18 0 chr4 11699443 11699609 -190628738 + AluJ SINE Alu 135 303 -9 359 313 26 14 chr4 11699609 11699850 -190628497 + L1ME LINE L1 5443 5700 -470 1681 313 75 30 chr4 11700420 11701432 -190626915 + L2 LINE L2 2131 3205 -108 661 287 89 13 chr4 11701428 11701665 -190626682 - MIR SINE MIR -6 256 2 * 329 289 11 0 chr4 11701700 11701790 -190626557 + L2 LINE L2 3221 3311 -2 440 271 16 94 chr4 11701863 11702055 -190626292 + MIR SINE MIR 82 258 -4 1717 130 72 44 chr4 11702446 11702807 -190625540 + THE1C LTR MaLR 3 373 -2 242 243 95 0 chr4 11703118 11703192 -190625155 - MIR SINE MIR -79 183 103 181 287 183 37 chr4 11703241 11703405 -190624942 + MIR SINE MIR 25 212 -50 276 319 72 25 chr4 11704038 11704314 -190624033 - L1ME LINE L1 -320 5801 5513 1345 181 0 41 chr4 11705661 11705931 -190622416 - Tigger3(Golem) DNA MER2_type -1 3028 2770 1865 167 0 10 chr4 11706005 11706298 -190622049 + AluSx SINE Alu 1 290 -22 351 0 0 0 chr4 11706298 11706337 -190622010 + (CA)n Simple_repeat Simple_repeat 2 40 0 537 214 0 15 chr4 11706337 11706459 -190621888 + L1 LINE L1 3571 3695 -2451 248 159 32 0 chr4 11706473 11706536 -190621811 + L1 LINE L1 3673 3737 -2409 1488 136 0 14 chr4 11706544 11706757 -190621590 + AluSg/x SINE Alu 84 293 -17 2348 191 11 2 chr4 11706762 11707232 -190621115 + L1MA6 LINE L1 5827 6300 0 2347 131 38 8 chr4 11707232 11707704 -190620643 - Tigger3(Golem) DNA MER2_type -258 2771 2286 2311 79 24 0 chr4 11707991 11708283 -190620064 - AluY SINE Alu -12 299 1 612 167 0 0 chr4 11708629 11708731 -190619616 + AluSc SINE Alu 199 300 -9 2094 120 10 0 chr4 11709199 11709498 -190618849 - AluSg SINE Alu -8 302 1 22 0 0 0 chr4 11709503 11709525 -190618822 + AT_rich Low_complexity Low_complexity 1 22 0 232 359 23 23 chr4 11709767 11709895 -190618452 + MIR SINE MIR 12 139 -123 839 313 52 45 chr4 11710119 11710827 -190617520 + L2 LINE L2 2584 3299 -14 244 274 0 32 chr4 11711203 11711265 -190617082 + L2 LINE L2 3196 3255 -17 1502 91 55 0 chr4 11711789 11712008 -190616339 - L1PA11 LINE L1 -4 6170 5940 21 36 0 0 chr4 11713279 11713307 -190615040 + AT_rich Low_complexity Low_complexity 1 28 0 2119 126 0 0 chr4 11713383 11713669 -190614678 - AluSc SINE Alu -23 286 1 2780 10 0 0 chr4 11714135 11714437 -190613910 - AluYa5 SINE Alu -9 302 1 189 330 96 0 chr4 11714912 11715006 -190613341 + MIR SINE MIR 16 118 -90 220 301 0 32 chr4 11715112 11715205 -190613142 - MIR SINE MIR -44 218 129 2252 100 3 22 chr4 11715258 11715569 -190612778 + AluY SINE Alu 1 305 -6 514 291 42 0 chr4 11715650 11715815 -190612532 + MER5B DNA MER1_type 3 174 -4 310 222 78 132 chr4 11716700 11716867 -190611480 - MIR SINE MIR -82 180 23 2516 81 136 5 chr4 11717065 11717461 -190610886 + LTR7 LTR ERV1 1 448 -2 14450 101 26 21 chr4 11717463 11720261 -190608086 + HERVH LTR ERV1 1 2995 -4718 5964 77 3 5 chr4 11720240 11721095 -190607252 + HERVH LTR ERV1 3140 3993 -3720 * 4114 145 0 1 chr4 11721097 11721760 -190606587 + HERVH LTR ERV1 4488 5149 -2564 1249 140 28 0 chr4 11721761 11721975 -190606372 + HERVH LTR ERV1 5600 5819 -1894 2248 93 48 13 chr4 11721975 11722352 -190605995 + HERVH LTR ERV1 7324 7713 0 2531 85 128 5 chr4 11722352 11722751 -190605596 + LTR7 LTR ERV1 1 448 -2 238 171 32 32 chr4 11723837 11723960 -190604387 + (TA)n Simple_repeat Simple_repeat 2 124 0 45 0 0 0 chr4 11724022 11724067 -190604280 + AT_rich Low_complexity Low_complexity 1 45 0 249 202 39 51 chr4 11724072 11724250 -190604097 + (TATAG)n Simple_repeat Simple_repeat 2 177 0 * 302 176 27 85 chr4 11724208 11724396 -190603951 + (TATAA)n Simple_repeat Simple_repeat 2 178 0 * 354 197 33 55 chr4 11724332 11724515 -190603832 + (TTATA)n Simple_repeat Simple_repeat 1 179 0 * 400 209 40 23 chr4 11724455 11724686 -190603661 + (TA)n Simple_repeat Simple_repeat 1 234 0 501 16 0 0 chr4 11725922 11725986 -190602361 + L1PA3 LINE L1 6089 6152 -3 437 237 0 11 chr4 11726281 11726374 -190601973 - MER5A DNA MER1_type -84 105 14 198 0 0 0 chr4 11726497 11726519 -190601828 + (T)n Simple_repeat Simple_repeat 1 22 0 2139 158 43 39 chr4 11726872 11727137 -190601210 - MLT1C LTR MaLR 0 467 198 2063 148 52 0 chr4 11727137 11727482 -190600865 + THE1B LTR MaLR 2 364 0 2139 158 43 39 chr4 11727482 11727679 -190600668 - MLT1C LTR MaLR -269 198 3 24 0 0 0 chr4 11728249 11728273 -190600074 + AT_rich Low_complexity Low_complexity 1 24 0 427 107 16 57 chr4 11729301 11729423 -190598924 + (TTC)n Simple_repeat Simple_repeat 2 118 0 534 288 86 38 chr4 11730407 11730699 -190597648 - L2 LINE L2 0 3313 3008 1658 202 5 63 chr4 11731000 11731410 -190596937 - MLT1B LTR MaLR -4 386 1 335 253 12 12 chr4 11731834 11731996 -190596351 + GA-rich Low_complexity Low_complexity 2 163 0 6702 75 5 2 chr4 11732087 11733761 -190594586 + L1PA7 LINE L1 4480 6150 -4 191 267 58 35 chr4 11733891 11733977 -190594370 - MIR3 SINE MIR -38 170 83 310 287 11 0 chr4 11735149 11735236 -190593111 - MIR SINE MIR -63 145 58 275 304 55 118 chr4 11735654 11736052 -190592295 + L2 LINE L2 2892 3264 -8 * 441 198 23 0 chr4 11736048 11736134 -190592213 + MIR SINE MIR 56 143 -119 3492 156 40 39 chr4 11736509 11737235 -190591112 + LTR8A LTR ERV1 1 727 0 240 313 50 0 chr4 11737296 11737395 -190590952 + MIR3 SINE MIR 98 201 -7 275 319 107 6 chr4 11738240 11738409 -190589938 - MIR SINE MIR -11 251 66 2166 137 82 20 chr4 11738895 11739298 -190589049 + MSTA LTR MaLR 1 428 0 225 262 131 0 chr4 11739298 11739382 -190588965 + MER63 DNA MER1_type 11 731 -331 641 297 6 28 chr4 11739947 11740129 -190588218 - MIR SINE MIR -37 225 48 474 272 37 31 chr4 11740219 11740381 -190587966 + MIR3 SINE MIR 19 181 -27 372 372 64 6 chr4 11740579 11740822 -190587525 - MIR SINE MIR -4 258 7 689 190 72 9 chr4 11741138 11741378 -190586969 + MLT1B LTR MaLR 83 380 -10 213 267 0 70 chr4 11741648 11741734 -190586613 - MIR SINE MIR -88 174 95 352 359 96 23 chr4 11742246 11742466 -190585881 + MIR SINE MIR 20 255 -7 1757 114 27 71 chr4 11742795 11743131 -190585216 - AluSg SINE Alu 0 323 1 188 362 53 20 chr4 11743984 11744136 -190584211 + MIR SINE MIR 79 235 -27 515 362 63 23 chr4 11744155 11744586 -190583761 + L3 LINE CR1 936 1383 -194 2628 286 86 55 chr4 11744884 11745994 -190582353 + L2 LINE L2 1570 2739 -574 2049 131 0 16 chr4 11745994 11746306 -190582041 + AluSx SINE Alu 1 307 -5 2628 286 86 55 chr4 11746306 11746854 -190581493 + L2 LINE L2 2739 3268 -45 741 275 94 26 chr4 11746884 11747193 -190581154 - LTR33 LTR ERVL -178 343 14 747 260 29 25 chr4 11748086 11748290 -190580057 + MIR SINE MIR 53 257 -5 1208 219 88 78 chr4 11748490 11748592 -190579755 + MLT1D LTR MaLR 3 102 -403 2708 94 3 0 chr4 11748592 11748955 -190579392 + THE1B LTR MaLR 1 364 0 1208 219 88 78 chr4 11748955 11749350 -190578997 + MLT1D LTR MaLR 102 505 0 329 191 0 109 chr4 11749605 11749715 -190578632 - MER53 DNA DNA -68 121 24 273 192 0 0 chr4 11749672 11749724 -190578623 + MER53 DNA DNA 134 185 -4 * 512 315 12 6 chr4 11749777 11749939 -190578408 + MER5B DNA MER1_type 1 163 -15 433 328 44 28 chr4 11749948 11750128 -190578219 - MER5A DNA MER1_type 0 189 7 223 316 13 13 chr4 11751333 11751412 -190576935 + MIR SINE MIR 15 93 -169 205 200 233 42 chr4 11752169 11752289 -190576058 + MIR SINE MIR 117 259 -3 216 407 15 0 chr4 11752666 11752801 -190575546 - L2 LINE L2 -17 3296 3160 2218 112 0 3 chr4 11753123 11753418 -190574929 + AluSc SINE Alu 1 294 -15 281 286 67 57 chr4 11753656 11753761 -190574586 - L2 LINE L2 -309 2963 2858 223 267 93 12 chr4 11753881 11753967 -190574380 + MIR SINE MIR 116 208 -54 1752 307 103 68 chr4 11754650 11755304 -190573043 - L2 LINE L2 -4 3309 2679 1891 195 13 23 chr4 11755304 11755694 -190572653 - MLT1B LTR MaLR -4 386 1 1752 307 103 68 chr4 11755694 11756152 -190572195 - L2 LINE L2 -634 2679 2238 1456 134 31 0 chr4 11756152 11756375 -190571972 - MER30 DNA MER1_type 0 230 1 1752 307 103 68 chr4 11756375 11756993 -190571354 - L2 LINE L2 -1075 2238 1513 494 136 0 12 chr4 11757162 11757243 -190571104 - AluSg/x SINE Alu -17 295 216 27 73 0 0 chr4 11758432 11758487 -190569860 + AT_rich Low_complexity Low_complexity 1 55 0 804 276 14 9 chr4 11758569 11758790 -190569557 + MER58A DNA MER1_type 2 223 -1 643 304 118 32 chr4 11758841 11759196 -190569151 - MLT1L LTR MaLR -4 611 195 1981 136 14 3 chr4 11759196 11759491 -190568856 - AluSx SINE Alu -14 298 1 643 304 118 32 chr4 11759491 11759661 -190568686 - MLT1L LTR MaLR -420 195 41 522 234 9 9 chr4 11759741 11759848 -190568499 + L2 LINE L2 3189 3295 -18 293 314 58 49 chr4 11760412 11760638 -190567709 - L2 LINE L2 -194 3078 2851 210 197 45 45 chr4 11761258 11761324 -190567023 + MIR3 SINE MIR 111 176 -32 226 313 0 0 chr4 11762886 11762950 -190565397 - MIR SINE MIR -133 129 66 348 257 48 119 chr4 11763449 11763573 -190564774 + MIR SINE MIR 20 125 -137 186 71 0 0 chr4 11763573 11763601 -190564746 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 348 257 48 119 chr4 11763601 11763686 -190564661 + MIR SINE MIR 125 214 -48 212 313 9 8 chr4 11763834 11763976 -190564371 + MIR3 SINE MIR 91 207 -1 2493 81 0 0 chr4 11764486 11764796 -190563551 + AluY SINE Alu 1 310 -1 361 299 160 18 chr4 11765037 11765318 -190563029 - MLT1J1 LTR MaLR -106 340 20 400 228 53 70 chr4 11765768 11765882 -190562465 + L2 LINE L2 3202 3313 0 1231 199 126 0 chr4 11765993 11766137 -190562210 - AluSx SINE Alu -6 296 172 207 0 0 0 chr4 11766137 11766160 -190562187 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 1231 199 126 0 chr4 11766160 11766276 -190562071 - AluSx SINE Alu -130 172 3 513 102 19 74 chr4 11766340 11766448 -190561899 + AluSg/x SINE Alu 208 309 0 221 167 19 37 chr4 11766454 11766483 -190561864 + GA-rich Low_complexity Low_complexity 1 30 -23 1934 147 0 20 chr4 11766483 11766776 -190561571 + AluSx SINE Alu 26 312 0 221 167 19 37 chr4 11766776 11766800 -190561547 + GA-rich Low_complexity Low_complexity 30 53 0 225 269 0 0 chr4 11767512 11767590 -190560757 + (TATG)n Simple_repeat Simple_repeat 1 78 0 198 327 0 0 chr4 11767972 11768024 -190560323 + MIR SINE MIR 93 144 -64 348 282 73 0 chr4 11768741 11768851 -190559496 - L2 LINE L2 -12 3301 3184 689 332 42 49 chr4 11769069 11769494 -190558853 + L2 LINE L2 2861 3282 -31 699 282 13 15 chr4 11769524 11769921 -190558426 + L1M4 LINE L1 2918 3313 -2833 1743 147 47 32 chr4 11769934 11770274 -190558073 + MER21B LTR ERV1 508 852 -11 335 331 45 19 chr4 11770440 11770594 -190557753 + MIR3 SINE MIR 3 160 -48 324 240 78 36 chr4 11770676 11770868 -190557479 - MER113 DNA MER1_type? -321 200 1 241 339 95 42 chr4 11770933 11771101 -190557246 - L2 LINE L2 0 3272 3096 206 288 34 51 chr4 11771125 11771243 -190557104 + L2 LINE L2 2626 2741 -573 771 209 40 60 chr4 11771248 11771449 -190556898 + MER58A DNA MER1_type 7 203 -21 249 108 0 0 chr4 11772701 11772738 -190555609 + (TG)n Simple_repeat Simple_repeat 2 38 0 246 297 0 0 chr4 11773834 11773898 -190554449 + (TATATG)n Simple_repeat Simple_repeat 2 65 0 1295 255 40 64 chr4 11774388 11774917 -190553430 + LTR40a LTR ERVL 1 516 -3 311 315 97 37 chr4 11775106 11775322 -190553025 + MIR SINE MIR 10 238 -24 254 215 254 31 chr4 11775485 11775615 -190552732 + MLT1L LTR MaLR 54 212 -403 198 0 0 0 chr4 11775699 11775721 -190552626 + (A)n Simple_repeat Simple_repeat 1 22 0 1283 235 29 63 chr4 11775726 11776100 -190552247 + MLT1C LTR MaLR 39 397 -70 225 0 0 0 chr4 11776100 11776125 -190552222 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 1283 235 29 63 chr4 11776125 11776192 -190552155 + MLT1C LTR MaLR 397 465 -2 252 97 0 97 chr4 11776486 11776548 -190551799 - LTR66 LTR ERVL -171 439 384 202 150 0 25 chr4 11776553 11776593 -190551754 + (TA)n Simple_repeat Simple_repeat 1 39 0 425 258 0 0 chr4 11777415 11777512 -190550835 - MER81 DNA DNA -13 101 5 192 290 0 93 chr4 11777718 11777825 -190550522 + MIR SINE MIR 96 192 -70 316 146 0 0 chr4 11779466 11779521 -190548826 + MADE1 DNA Mariner 1 55 -25 290 352 142 37 chr4 11779561 11779885 -190548462 - L2 LINE L2 -421 2893 2536 318 206 0 27 chr4 11780000 11780073 -190548274 - MER116 DNA Mariner -2 78 8 210 179 0 0 chr4 11780314 11780370 -190547977 + A-rich Low_complexity Low_complexity 1 56 0 701 181 44 54 chr4 11781141 11781294 -190547053 + L1MA8 LINE L1 6090 6242 -49 2192 100 3 55 chr4 11781294 11781623 -190546724 + AluSq SINE Alu 2 313 0 701 181 44 54 chr4 11781623 11781673 -190546674 + L1MA8 LINE L1 6242 6291 0 449 34 17 0 chr4 11781880 11781939 -190546408 + (TAAA)n Simple_repeat Simple_repeat 2 61 0 306 0 0 0 chr4 11783198 11783232 -190545115 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 182 331 88 11 chr4 11783481 11783662 -190544685 - L2 LINE L2 -374 2940 2746 249 83 0 0 chr4 11784192 11784228 -190544119 + (TG)n Simple_repeat Simple_repeat 2 37 0 234 390 8 0 chr4 11784325 11784443 -190543904 - L2 LINE L2 -671 2643 2525 367 369 8 8 chr4 11785228 11785350 -190542997 + MIR3 SINE MIR 63 184 -24 1916 286 78 19 chr4 11786100 11786927 -190541420 - L2 LINE L2 -239 3074 2201 2491 180 31 72 chr4 11786933 11787645 -190540702 + L1MA9 LINE L1 5592 6274 -38 439 260 165 57 chr4 11787663 11788221 -190540126 - L2 LINE L2 -1106 2208 1591 2105 116 45 0 chr4 11789036 11789328 -190539019 - AluSg SINE Alu -5 305 1 209 316 34 77 chr4 11789365 11789574 -190538773 + L2 LINE L2 2855 3054 -218 542 310 51 35 chr4 11789590 11789845 -190538502 - MIR SINE MIR -3 259 1 212 306 42 0 chr4 11790290 11790362 -190537985 - MIR SINE MIR -170 92 18 21 0 0 0 chr4 11791451 11791472 -190536875 + AT_rich Low_complexity Low_complexity 1 21 0 2257 113 3 3 chr4 11791490 11791800 -190536547 - AluSg SINE Alu 0 310 1 306 235 82 12 chr4 11791847 11791932 -190536415 + MIR SINE MIR 73 163 -99 595 282 63 35 chr4 11791999 11792318 -190536029 + LTR16C LTR ERVL 91 418 -73 938 240 21 34 chr4 11792425 11792780 -190535567 - MLT2C1 LTR ERVL -11 652 44 39170 51 3 5 chr4 11792784 11797963 -190530384 + L1PA4 LINE L1 3 5174 -972 4398 41 2 6 chr4 11797963 11798501 -190529846 + L1PA4 LINE L1 5615 6152 -3 206 239 14 0 chr4 11798591 11798662 -190529685 + (TTATA)n Simple_repeat Simple_repeat 4 75 0 791 218 5 21 chr4 11799025 11799213 -190529134 + MER105 DNA DNA 19 203 -1 284 320 81 20 chr4 11799340 11799537 -190528810 + L1ME1 LINE L1 5955 6163 -3 2337 194 14 0 chr4 11800273 11800716 -190527631 + MER70A LTR ERVL 23 471 -1 4559 80 8 6 chr4 11803037 11803671 -190524676 + L1PA10 LINE L1 5534 6168 0 932 181 104 40 chr4 11803926 11803969 -190524378 - MER33 DNA MER1_type -2267 318 279 2019 99 0 66 chr4 11803969 11804295 -190524052 - AluSc SINE Alu 0 306 1 932 181 104 40 chr4 11804295 11804548 -190523799 - MER33 DNA MER1_type -2306 279 1 201 74 0 0 chr4 11804939 11804966 -190523381 + (CA)n Simple_repeat Simple_repeat 2 28 0 261 179 47 38 chr4 11805543 11805649 -190522698 + (TAA)n Simple_repeat Simple_repeat 1 107 0 358 281 160 35 chr4 11805661 11805892 -190522455 - MIR SINE MIR -1 261 2 243 181 278 0 chr4 11806120 11806192 -190522155 + L1MA9 LINE L1 5702 5793 -519 220 189 38 0 chr4 11806192 11806245 -190522102 + (TA)n Simple_repeat Simple_repeat 1 55 0 2013 196 25 6 chr4 11806249 11806733 -190521614 + L1MA9 LINE L1 5799 6291 -21 652 315 119 43 chr4 11807526 11807753 -190520594 + L2 LINE L2 2458 2666 -647 1941 132 48 40 chr4 11807753 11808124 -190520223 + THE1C LTR MaLR 2 375 0 652 315 119 43 chr4 11808124 11808166 -190520181 + L2 LINE L2 2666 2703 -610 2100 156 117 5 chr4 11808166 11808551 -190519796 + MSTA LTR MaLR 1 428 0 652 315 119 43 chr4 11808551 11809068 -190519279 + L2 LINE L2 2703 3307 -6 227 224 250 0 chr4 11810090 11810166 -190518181 - L2 LINE L2 -17 3296 3202 239 279 62 54 chr4 11810231 11810360 -190517987 - MIR SINE MIR -80 182 53 896 20 0 82 chr4 11810411 11810607 -190517740 + (TA)n Simple_repeat Simple_repeat 1 180 0 398 297 16 0 chr4 11810621 11810749 -190517598 - MLT1G1 LTR MaLR -456 139 10 1209 259 57 12 chr4 11810760 11811181 -190517166 + L1MC4 LINE L1 7425 7864 -178 22 56 0 0 chr4 11811244 11811280 -190517067 + AT_rich Low_complexity Low_complexity 1 36 0 26 0 0 0 chr4 11811431 11811457 -190516890 + AT_rich Low_complexity Low_complexity 1 26 0 25 65 0 0 chr4 11811822 11811868 -190516479 + AT_rich Low_complexity Low_complexity 1 46 0 665 213 10 46 chr4 11812275 11812472 -190515875 - MER3 DNA MER1_type -5 204 15 635 148 58 7 chr4 11812475 11812630 -190515717 - L1MA7 LINE L1 0 6291 6129 41526 44 3 1 chr4 11812733 11818872 -190509475 - L1PA3 LINE L1 0 6155 5 1131 52 0 0 chr4 11819014 11819149 -190509198 + AluY SINE Alu 1 135 -176 501 279 54 66 chr4 11819193 11819308 -190509039 + L1ME2 LINE L1 5498 5613 -551 2138 233 12 52 chr4 11819308 11819883 -190508464 + MLT2B3 LTR ERVL 3 554 0 501 279 54 66 chr4 11819883 11820153 -190508194 + L1ME2 LINE L1 5613 5884 -280 23 33 0 0 chr4 11820591 11820621 -190507726 + AT_rich Low_complexity Low_complexity 1 30 0 673 277 22 0 chr4 11820681 11820865 -190507482 + MER5A DNA MER1_type 2 189 0 972 201 18 27 chr4 11821220 11821444 -190506903 + MER92B LTR ERV1 1 222 -414 532 279 32 11 chr4 11821715 11821905 -190506442 + L1MB7 LINE L1 13 206 -6653 3158 159 14 17 chr4 11821954 11822534 -190505813 + L1PB4 LINE L1 5577 6154 -2 4180 239 48 40 chr4 11822566 11823630 -190504717 + L1MB7 LINE L1 4181 5264 -1693 1401 185 6 106 chr4 11823630 11823960 -190504387 - AluJb SINE Alu -4 298 2 4180 239 48 40 chr4 11823960 11824513 -190503834 + L1MB7 LINE L1 5264 5811 -1146 1893 176 0 0 chr4 11824516 11824806 -190503541 - AluJb SINE Alu -22 290 1 2337 97 0 3 chr4 11824829 11825140 -190503207 + AluY SINE Alu 1 310 -1 2626 214 41 49 chr4 11825225 11826139 -190502208 + L1MB7 LINE L1 5976 6875 -120 308 191 225 0 chr4 11826143 11826232 -190502115 - Tigger5 DNA MER2_type 0 2323 2215 286 200 0 0 chr4 11826224 11826279 -190502068 - Tigger5 DNA MER2_type -2268 55 1 * 410 246 0 0 chr4 11826280 11826390 -190501957 + L1MB8 LINE L1 6065 6174 -4 339 228 40 20 chr4 11826907 11827008 -190501339 + Charlie8 DNA MER1_type 75 177 -2240 1135 280 105 42 chr4 11827656 11828532 -190499815 + L2 LINE L2 2170 3164 -149 297 282 8 8 chr4 11828532 11828656 -190499691 + (TA)n Simple_repeat Simple_repeat 2 125 0 299 250 42 89 chr4 11828662 11828830 -190499517 + L2 LINE L2 3115 3274 -39 229 318 9 19 chr4 11828830 11828937 -190499410 - MLT1J LTR MaLR -301 210 105 300 83 0 0 chr4 11829338 11829386 -190498961 + (CA)n Simple_repeat Simple_repeat 1 48 0 267 275 0 38 chr4 11829673 11829753 -190498594 + L2 LINE L2 3194 3270 -2 233 417 37 0 chr4 11829810 11829973 -190498374 - MIR SINE MIR -93 169 1 216 327 18 44 chr4 11830348 11830461 -190497886 - MIR SINE MIR -145 117 8 422 285 161 15 chr4 11830840 11831059 -190497288 - MIR SINE MIR -7 255 5 408 298 78 41 chr4 11831070 11831312 -190497035 - MIR SINE MIR -6 256 6 450 318 73 30 chr4 11832702 11832935 -190495412 + MIR SINE MIR 8 250 -12 189 0 0 0 chr4 11833008 11833029 -190495318 + (ATG)n Simple_repeat Simple_repeat 3 23 0 255 143 41 0 chr4 11833400 11833449 -190494898 - MER94 DNA DNA -79 55 5 336 284 45 32 chr4 11834226 11834381 -190493966 + L1MB8 LINE L1 5785 5941 -237 22 0 0 0 chr4 11834512 11834534 -190493813 + AT_rich Low_complexity Low_complexity 1 22 0 2840 7 0 0 chr4 11835027 11835334 -190493013 + AluYb8 SINE Alu 1 307 -11 1510 122 36 0 chr4 11835461 11835683 -190492664 - MER30 DNA MER1_type 0 230 1 1941 144 0 43 chr4 11836276 11836602 -190491745 - AluSx SINE Alu 0 312 1 635 311 18 18 chr4 11836745 11836973 -190491374 - MIR SINE MIR -5 257 30 417 54 0 0 chr4 11837313 11837369 -190490978 + (TG)n Simple_repeat Simple_repeat 1 56 0 281 269 39 13 chr4 11837460 11837538 -190490809 - MIR SINE MIR -96 166 87 235 371 75 33 chr4 11838212 11838425 -190489922 - MIR SINE MIR -23 239 18 351 78 0 0 chr4 11839014 11839065 -190489282 + (TG)n Simple_repeat Simple_repeat 2 52 0 1323 178 43 11 chr4 11839403 11839679 -190488668 - L1PB4 LINE L1 -1 6155 5871 506 77 26 0 chr4 11840229 11840307 -190488040 + MADE1 DNA Mariner 1 80 0 1119 271 65 36 chr4 11840530 11841050 -190487297 + L1M4 LINE L1 16 550 -5992 1359 248 31 56 chr4 11841050 11841529 -190486818 - MLT1D LTR MaLR -38 467 1 1949 198 30 51 chr4 11841529 11842035 -190486312 + L1MB7 LINE L1 5614 6108 -76 2370 89 0 10 chr4 11842035 11842339 -190486008 + AluSq SINE Alu 3 303 -10 1949 198 30 51 chr4 11842339 11842404 -190485943 + L1MB7 LINE L1 6108 6173 -11 305 308 39 19 chr4 11842646 11842750 -190485597 - MIR SINE MIR -150 112 7 234 156 0 0 chr4 11842810 11842855 -190485492 + (CAA)n Simple_repeat Simple_repeat 1 45 0 2055 120 3 0 chr4 11843479 11843785 -190484562 + AluSx SINE Alu 1 307 0 208 0 0 0 chr4 11843762 11843813 -190484534 + (CAAAA)n Simple_repeat Simple_repeat 2 52 0 21 0 0 0 chr4 11843813 11843834 -190484513 + AT_rich Low_complexity Low_complexity 1 21 0 448 317 144 5 chr4 11844352 11844560 -190483787 + MIR SINE MIR 25 261 -1 1293 120 6 0 chr4 11844617 11844826 -190483521 - AluSg/x SINE Alu 0 318 109 2373 98 0 0 chr4 11844973 11845280 -190483067 + AluSx SINE Alu 1 307 -5 1261 226 57 57 chr4 11845337 11845842 -190482505 + MLT1D LTR MaLR 1 505 0 2198 122 0 0 chr4 11846014 11846317 -190482030 + AluSg SINE Alu 1 303 -7 227 380 103 5 chr4 11847293 11847477 -190480870 - MIR SINE MIR -16 246 45 383 226 94 66 chr4 11847729 11848017 -190480330 - L1MC5 LINE L1 -55 7906 7611 327 256 202 76 chr4 11848299 11848537 -190479810 - L1MC4 LINE L1 -1041 7001 6734 451 309 95 84 chr4 11848588 11849102 -190479245 - L1MC4a LINE L1 -1213 6595 6076 1980 299 61 17 chr4 11849231 11850015 -190478332 - L2 LINE L2 -1178 2136 1318 218 330 107 0 chr4 11851033 11851145 -190477202 + MIR SINE MIR 82 205 -57 205 271 0 43 chr4 11851241 11851311 -190477036 + A-rich Low_complexity Low_complexity 3 69 0 2144 177 48 62 chr4 11851333 11851942 -190476405 + L1MD3 LINE L1 7396 7995 0 277 329 27 14 chr4 11851938 11852157 -190476190 + L1ME1 LINE L1 5601 5822 -299 * 342 242 137 22 chr4 11852166 11852348 -190475999 + L1ME1 LINE L1 5959 6161 -5 345 347 103 14 chr4 11852680 11852893 -190475454 + MIR SINE MIR 4 235 -27 234 150 0 0 chr4 11852934 11852974 -190475373 + (TTA)n Simple_repeat Simple_repeat 2 41 0 269 308 51 34 chr4 11853365 11853482 -190474865 + MIR3 SINE MIR 15 133 -75 294 29 0 0 chr4 11854147 11854182 -190474165 + (TG)n Simple_repeat Simple_repeat 1 35 0 323 215 97 11 chr4 11854548 11854641 -190473706 + MLT1I LTR MaLR 305 405 -4 527 128 0 0 chr4 11855023 11855101 -190473246 + FRAM SINE Alu 22 99 -77 233 309 91 51 chr4 11855131 11855306 -190473041 - L2 LINE L2 -180 3133 2952 403 301 147 6 chr4 11855538 11855694 -190472653 - MER45A DNA AcHobo 0 178 1 393 300 69 6 chr4 11855915 11856075 -190472272 + MIR SINE MIR 20 189 -73 2708 69 11 0 chr4 11856675 11857023 -190471324 + L1PA7 LINE L1 5799 6150 -4 298 310 122 35 chr4 11857107 11857336 -190471011 - L2 LINE L2 -454 2860 2612 640 269 88 63 chr4 11857410 11857648 -190470699 - MIR SINE MIR -1 261 18 1148 129 5 10 chr4 11857777 11857970 -190470377 - L1PB2 LINE L1 -2 6149 5958 1009 189 4 37 chr4 11858143 11858436 -190469911 - MLT1C LTR MaLR 0 467 120 725 217 12 0 chr4 11858592 11858758 -190469589 - MLT1B LTR MaLR -193 197 30 1930 137 126 8 chr4 11858767 11859139 -190469208 - MSTA LTR MaLR -12 416 1 1642 226 62 24 chr4 11859200 11859369 -190468978 + MLT1D LTR MaLR 23 184 -321 2088 139 10 0 chr4 11859369 11859678 -190468669 + AluSp SINE Alu 1 312 -1 1642 226 62 24 chr4 11859678 11859818 -190468529 + MLT1D LTR MaLR 184 317 -188 1213 104 19 160 chr4 11859818 11859932 -190468415 - MER30 DNA MER1_type 0 230 174 2100 145 6 6 chr4 11859932 11860243 -190468104 - AluSq SINE Alu -2 311 1 1213 104 19 160 chr4 11860243 11860396 -190467951 - MER30 DNA MER1_type -56 174 1 1642 226 62 24 chr4 11860396 11860550 -190467797 + MLT1D LTR MaLR 317 505 0 223 275 113 42 chr4 11861339 11861481 -190466866 + MIR SINE MIR 37 188 -74 258 322 83 8 chr4 11862501 11862622 -190465725 - MIR SINE MIR -76 186 57 287 339 62 5 chr4 11862917 11863109 -190465238 + L2 LINE L2 2467 2669 -645 398 351 27 27 chr4 11863230 11863526 -190464821 + MLT1J LTR MaLR 111 406 -105 1391 252 67 39 chr4 11863868 11864333 -190464014 + MLT2F LTR ERVL 186 663 0 856 214 70 41 chr4 11864353 11864596 -190463751 - MIR SINE MIR 0 262 13 188 421 40 16 chr4 11864727 11864853 -190463494 - L2 LINE L2 -11 3261 3133 492 221 0 10 chr4 11865120 11865224 -190463123 + MER5A DNA MER1_type 4 106 -83 462 316 135 5 chr4 11865251 11865466 -190462881 + MIR SINE MIR 15 257 -5 1398 313 86 48 chr4 11866092 11867296 -190461051 + L2 LINE L2 2042 3303 -10 329 333 8 17 chr4 11867804 11867924 -190460423 + L2 LINE L2 3194 3312 -1 21 0 0 0 chr4 11868293 11868314 -190460033 + AT_rich Low_complexity Low_complexity 1 21 0 2200 137 63 31 chr4 11868493 11868908 -190459439 + MSTA LTR MaLR 1 428 0 191 189 19 0 chr4 11869191 11869244 -190459103 + (TAA)n Simple_repeat Simple_repeat 1 54 0 362 361 68 5 chr4 11869606 11869984 -190458363 - L2 LINE L2 0 3313 2830 335 299 123 0 chr4 11870448 11870602 -190457745 - MIR SINE MIR -17 245 73 188 254 127 0 chr4 11871274 11871329 -190457018 - MIR3 SINE MIR -29 179 118 435 352 101 18 chr4 11871410 11871629 -190456718 + MIR SINE MIR 20 256 -6 1378 204 20 56 chr4 11871766 11872159 -190456188 - MLT1C LTR MaLR -8 459 81 2055 140 0 16 chr4 11872164 11872479 -190455868 - AluSg SINE Alu 0 310 1 365 187 28 49 chr4 11872503 11872531 -190455816 - MLT1C LTR MaLR -266 124 97 2026 33 4 0 chr4 11872531 11872776 -190455571 - L1PA5 LINE L1 0 6154 5909 365 187 28 49 chr4 11872776 11872868 -190455479 - MLT1C LTR MaLR -293 97 6 253 308 29 29 chr4 11872873 11872977 -190455370 + L2 LINE L2 3168 3271 -1 1607 176 36 6 chr4 11873982 11874312 -190454035 - MLT1B LTR MaLR -44 346 7 335 313 72 56 chr4 11874313 11874562 -190453785 + L2 LINE L2 3009 3261 -52 247 362 91 26 chr4 11874557 11874985 -190453362 + L2 LINE L2 1963 2418 -896 * 14070 37 2 0 chr4 11875185 11877666 -190450681 + L1PA5 LINE L1 3664 6148 -6 327 78 0 0 chr4 11877692 11877743 -190450604 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 838 245 13 8 chr4 11878013 11878318 -190450029 + LTR16A LTR ERVL 89 437 -13 229 360 30 0 chr4 11878330 11878430 -190449917 + L2 LINE L2 2928 3030 -242 1912 232 17 17 chr4 11878585 11879063 -190449284 - MLT1E2 LTR MaLR -1 625 148 210 313 70 17 chr4 11880692 11880807 -190447540 - L2 LINE L2 -1 3271 3151 790 193 29 63 chr4 11880905 11881112 -190447235 - MER3 DNA MER1_type -8 201 2 268 335 30 36 chr4 11881132 11881299 -190447048 - L2 LINE L2 -225 3047 2882 233 276 78 43 chr4 11881648 11881764 -190446583 - L2 LINE L2 -557 2757 2638 352 268 20 85 chr4 11882683 11882814 -190445533 + MIR SINE MIR 86 206 -56 763 274 54 12 chr4 11882814 11883055 -190445292 + MIR SINE MIR 2 252 -10 1756 109 0 60 chr4 11883245 11883510 -190444837 - AluSq SINE Alu -64 249 1 244 281 92 37 chr4 11883716 11884044 -190444303 + HAL1 LINE L1 1001 1346 -1161 2021 234 31 70 chr4 11884047 11884779 -190443568 + L1ME1 LINE L1 5429 6132 -34 2063 152 0 0 chr4 11884896 11885199 -190443148 + AluSx SINE Alu 1 303 -9 405 228 175 23 chr4 11885214 11885461 -190442886 + HAL1b LINE L1 376 1744 -763 1856 152 10 3 chr4 11885657 11885785 -190442562 + AluSx SINE Alu 1 127 -185 369 0 0 0 chr4 11885785 11885826 -190442521 + (CA)n Simple_repeat Simple_repeat 2 42 0 1856 152 10 3 chr4 11885826 11886007 -190442340 + AluSx SINE Alu 127 312 0 2888 195 29 7 chr4 11886848 11887443 -190440904 - MER73 LTR ERVL -2 642 35 242 325 39 0 chr4 11887660 11887737 -190440610 - L2 LINE L2 -2 3311 3232 461 316 75 0 chr4 11888819 11889006 -190439341 - MIR SINE MIR -36 226 26 410 308 68 12 chr4 11889142 11889332 -190439015 + MIR SINE MIR 36 235 -27 26 0 0 0 chr4 11889931 11889957 -190438390 + AT_rich Low_complexity Low_complexity 1 26 0 693 262 97 17 chr4 11890008 11890245 -190438102 + MIR SINE MIR 7 262 0 254 281 55 31 chr4 11890476 11890604 -190437743 - MLT1K LTR MaLR -290 298 168 1216 249 140 25 chr4 11890608 11891014 -190437333 + MLT1D LTR MaLR 1 453 -52 22 0 0 0 chr4 11891222 11891244 -190437103 + AT_rich Low_complexity Low_complexity 1 22 0 186 237 136 51 chr4 11892967 11893085 -190435262 - MIR SINE MIR -26 236 109 622 252 35 70 chr4 11894159 11894417 -190433930 - MER112 DNA MER1_type -8 252 4 198 333 156 0 chr4 11895088 11895184 -190433163 + MIR SINE MIR 9 119 -143 415 274 61 33 chr4 11895470 11895682 -190432665 + LTR16B LTR ERVL 247 464 0 2865 299 52 8 chr4 11895686 11896583 -190431764 + L2 LINE L2 2112 3074 -239 2074 140 21 56 chr4 11896583 11896961 -190431386 + MLT1A1 LTR MaLR 1 365 0 2865 299 52 8 chr4 11896961 11897213 -190431134 + L2 LINE L2 3074 3313 0 267 274 98 20 chr4 11897213 11897315 -190431032 + MIR SINE MIR 138 247 -15 342 336 13 97 chr4 11897742 11898058 -190430289 - L2 LINE L2 -9 3304 3019 225 224 0 0 chr4 11898261 11898319 -190430028 + (TA)n Simple_repeat Simple_repeat 2 59 0 196 0 118 0 chr4 11898385 11898419 -190429928 + A-rich Low_complexity Low_complexity 3 40 0 5682 112 5 5 chr4 11898429 11899794 -190428553 - L1PA14 LINE L1 -12 6149 4775 950 249 102 35 chr4 11900450 11900792 -190427555 - MLT1A1 LTR MaLR 0 365 1 25 65 0 0 chr4 11900793 11900839 -190427508 + AT_rich Low_complexity Low_complexity 1 46 0 441 281 25 55 chr4 11902016 11902367 -190425980 - MLT1I LTR MaLR -8 401 80 309 356 84 10 chr4 11902510 11902712 -190425635 + MIR SINE MIR 21 237 -25 24 32 0 0 chr4 11902788 11902819 -190425528 + AT_rich Low_complexity Low_complexity 1 31 0 227 301 73 32 chr4 11903085 11903208 -190425139 - MIR SINE MIR -12 250 123 1510 281 77 17 chr4 11903529 11904287 -190424060 + L1MC4 LINE L1 7098 7900 -142 265 234 0 13 chr4 11904384 11904461 -190423886 + L1MC4 LINE L1 7914 7989 -53 256 325 145 20 chr4 11904526 11904726 -190423621 - MIR SINE MIR -2 260 36 1969 107 4 0 chr4 11904899 11905161 -190423186 - AluSx SINE Alu -8 304 42 209 329 175 15 chr4 11905238 11905375 -190422972 - L2 LINE L2 -86 3186 3028 186 43 0 0 chr4 11905532 11905555 -190422792 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 195 129 0 0 chr4 11906336 11906367 -190421980 + (A)n Simple_repeat Simple_repeat 1 31 0 306 245 0 43 chr4 11906587 11906681 -190421666 - L1MC4 LINE L1 -1300 6742 6653 193 270 0 90 chr4 11907211 11907300 -190421047 - MIR SINE MIR -71 137 57 209 287 55 67 chr4 11907500 11907664 -190420683 + MIR3 SINE MIR 32 193 -15 582 109 0 0 chr4 11907938 11908030 -190420317 + (TA)n Simple_repeat Simple_repeat 1 92 0 306 0 0 0 chr4 11908029 11908063 -190420284 + (GA)n Simple_repeat Simple_repeat 2 35 0 * 1966 122 49 7 chr4 11908573 11908861 -190419486 - AluSx SINE Alu -12 300 1 317 179 0 0 chr4 11909299 11909355 -190418992 + L1MC4 LINE L1 6648 6703 -1339 249 217 0 43 chr4 11909370 11909462 -190418885 + L1MC4 LINE L1 6615 6702 -1340 237 108 0 0 chr4 11909521 11909558 -190418789 + (TA)n Simple_repeat Simple_repeat 1 37 0 525 291 71 11 chr4 11909703 11909885 -190418462 + MIR SINE MIR 64 256 -6 888 216 15 29 chr4 11910029 11910233 -190418114 + MER20 DNA MER1_type 1 201 -18 214 256 0 0 chr4 11910592 11910635 -190417712 - L2 LINE L2 -9 3304 3262 1068 193 118 24 chr4 11910641 11910812 -190417535 - MLT1A1 LTR MaLR 0 365 211 315 0 0 0 chr4 11910812 11910847 -190417500 + (GA)n Simple_repeat Simple_repeat 1 35 0 1068 193 118 24 chr4 11910847 11911006 -190417341 - MLT1A1 LTR MaLR -154 211 4 242 230 46 23 chr4 11911010 11911097 -190417250 - L2 LINE L2 -66 3247 3159 195 338 127 25 chr4 11911126 11911283 -190417064 - L2 LINE L2 -254 3059 2887 465 199 112 19 chr4 11912746 11912907 -190415440 - MER53 DNA DNA -13 176 1 34 24 0 0 chr4 11913359 11913400 -190414947 + AT_rich Low_complexity Low_complexity 1 41 0 6344 140 28 4 chr4 11913400 11915554 -190412793 - L1MA3 LINE L1 0 7724 5514 * 9424 138 41 8 chr4 11915553 11917184 -190411163 - L1MA3 LINE L1 -4776 2789 1105 580 143 59 17 chr4 11917180 11917299 -190411048 - L1MA3 LINE L1 -7430 135 12 * 380 171 0 13 chr4 11917877 11917953 -190410394 + MLT1A1 LTR MaLR 289 363 -2 1851 176 17 66 chr4 11918385 11918795 -190409552 + MLT1B LTR MaLR 1 390 0 312 210 76 105 chr4 11919325 11919593 -190408754 - L1MC4 LINE L1 -834 7002 6688 2446 55 0 16 chr4 11920227 11920539 -190407808 - AluY SINE Alu -4 307 1 1498 202 33 7 chr4 11921474 11921957 -190406390 - AluJb SINE Alu 0 491 1 1413 206 30 43 chr4 11921976 11922156 -190406191 - AluJo SINE Alu -13 299 123 189 0 0 0 chr4 11922156 11922177 -190406170 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 1413 206 30 43 chr4 11922177 11922297 -190406050 - AluJo SINE Alu -189 123 3 1865 240 67 65 chr4 11922302 11922816 -190405531 - L1ME1 LINE L1 -51 6115 5596 4045 123 11 51 chr4 11922816 11922837 -190405510 + L1PA13 LINE L1 5470 5490 -673 1644 110 125 26 chr4 11922837 11923101 -190405246 + AluSg1 SINE Alu 5 294 -15 4045 123 11 51 chr4 11923101 11923802 -190404545 + L1PA13 LINE L1 5490 6163 0 1865 240 67 65 chr4 11923802 11924118 -190404229 - L1ME1 LINE L1 -570 5596 5282 2092 106 0 0 chr4 11924154 11924429 -190403918 - AluSc SINE Alu -30 279 5 456 271 159 0 chr4 11924553 11924704 -190403643 - MER5A DNA MER1_type -6 183 9 552 230 25 25 chr4 11925293 11925454 -190402893 + Charlie7 DNA MER1_type 25 185 -2427 458 291 167 40 chr4 11925467 11925921 -190402426 - L2 LINE L2 -952 2362 1851 339 296 58 51 chr4 11926042 11926299 -190402048 - L1ME4a LINE L1 -44 6077 5819 320 237 15 44 chr4 11926336 11926471 -190401876 - L1ME4a LINE L1 -374 5747 5617 308 250 33 11 chr4 11926728 11926820 -190401527 + GA-rich Low_complexity Low_complexity 1 94 0 1996 134 42 22 chr4 11926842 11927199 -190401148 + THE1B LTR MaLR 1 364 0 206 162 27 0 chr4 11927872 11927909 -190400438 + GA-rich Low_complexity Low_complexity 4 41 0 2484 69 3 0 chr4 11928373 11928679 -190399668 + AluSg SINE Alu 1 307 -3 285 380 33 7 chr4 11929763 11929913 -190398434 + MIR3 SINE MIR 49 202 -6 2368 90 6 0 chr4 11930834 11931145 -190397202 + AluSp SINE Alu 1 313 0 192 77 0 0 chr4 11931158 11931184 -190397163 + (CTA)n Simple_repeat Simple_repeat 2 27 0 646 19 102 0 chr4 11931286 11931492 -190396855 + (TA)n Simple_repeat Simple_repeat 1 226 0 1955 256 55 12 chr4 11931541 11932100 -190396247 - MLT1E LTR MaLR -4 589 7 1125 301 101 26 chr4 11932395 11933002 -190395345 + L3 LINE CR1 807 1458 -119 186 303 124 0 chr4 11933009 11933098 -190395249 - L2 LINE L2 0 3272 3173 274 285 213 28 chr4 11933143 11933396 -190394951 - MLT1I LTR MaLR -17 392 93 183 80 0 0 chr4 11934366 11934391 -190393956 + (TTG)n Simple_repeat Simple_repeat 3 27 0 437 265 30 15 chr4 11934755 11934887 -190393460 - MIR SINE MIR -16 246 113 1089 277 45 70 chr4 11934892 11935354 -190392993 + L1ME3A LINE L1 5258 5695 -475 1928 216 29 79 chr4 11935354 11935937 -190392410 - MLT2B3 LTR ERVL 0 554 1 1089 277 45 70 chr4 11935937 11936232 -190392115 + L1ME3A LINE L1 5695 5996 -174 923 269 43 41 chr4 11936849 11937002 -190391345 + HsTC2 DNA Tc2 2 153 -1745 1730 233 78 50 chr4 11937002 11937105 -190391242 + MLT1E LTR MaLR 3 102 -491 2243 107 17 0 chr4 11937105 11937403 -190390944 - AluSx SINE Alu -9 303 1 1730 233 78 50 chr4 11937403 11937874 -190390473 + MLT1E LTR MaLR 102 593 0 923 269 43 41 chr4 11937874 11938134 -190390213 + HsTC2 DNA Tc2 153 419 -1479 1634 198 7 70 chr4 11938134 11938548 -190389799 - MLT1B LTR MaLR 0 390 3 923 269 43 41 chr4 11938548 11938576 -190389771 + HsTC2 DNA Tc2 419 445 -1453 435 171 0 13 chr4 11938550 11938626 -190389721 - MLT1D LTR MaLR -426 79 5 * 1934 59 0 0 chr4 11938643 11938879 -190389468 + L1PA5 LINE L1 5912 6147 -7 29 60 0 0 chr4 11939387 11939437 -190388910 + AT_rich Low_complexity Low_complexity 1 50 0 1500 185 59 19 chr4 11939606 11939930 -190388417 + MER1B DNA MER1_type 1 337 0 368 264 192 0 chr4 11940113 11940238 -190388109 - MIR SINE MIR -94 168 20 191 292 62 31 chr4 11940985 11941050 -190387297 + L2 LINE L2 3160 3226 -46 2825 81 16 14 chr4 11941852 11942246 -190386101 + L1PA10 LINE L1 5770 6163 -5 193 313 17 35 chr4 11942724 11942839 -190385508 + L2 LINE L2 3155 3267 -5 742 226 53 5 chr4 11943271 11943461 -190384886 - ORSL DNA AcHobo 0 275 77 454 259 46 38 chr4 11944587 11944718 -190383629 + MIR SINE MIR 11 142 -120 191 311 58 29 chr4 11944967 11945070 -190383277 + L2 LINE L2 3193 3298 -15 270 0 0 0 chr4 11946876 11946906 -190381441 + (A)n Simple_repeat Simple_repeat 1 30 0 216 200 0 0 chr4 11947566 11947621 -190380726 + CT-rich Low_complexity Low_complexity 2 56 0 187 286 24 24 chr4 11950700 11950784 -190377563 + MIR SINE MIR 69 152 -110 24 0 0 0 chr4 11951162 11951186 -190377161 + AT_rich Low_complexity Low_complexity 1 24 0 220 256 47 47 chr4 11951321 11951407 -190376940 + L2 LINE L2 3187 3272 0 188 356 40 0 chr4 11951421 11951522 -190376825 - MIR SINE MIR -77 185 81 250 304 11 11 chr4 11951955 11952047 -190376300 + LTR67 LTR ERVL 428 519 -38 578 271 82 79 chr4 11952331 11952671 -190375676 - MER102b DNA MER1_type 0 341 1 494 275 40 40 chr4 11952855 11953055 -190375292 - L2 LINE L2 -1 3312 3113 241 304 89 45 chr4 11953285 11953397 -190374950 - L2 LINE L2 -17 3255 3139 957 88 15 0 chr4 11953500 11953637 -190374710 - AluSp/q SINE Alu -2 311 173 27 73 0 0 chr4 11953767 11953822 -190374525 + AT_rich Low_complexity Low_complexity 1 55 0 261 196 144 62 chr4 11954133 11954230 -190374117 + L2 LINE L2 3162 3266 -47 202 293 40 30 chr4 11954609 11954708 -190373639 - MIR SINE MIR -107 155 56 727 194 94 0 chr4 11955440 11955610 -190372737 + MER53 DNA DNA 4 189 0 209 362 41 15 chr4 11956508 11956704 -190371643 + MIR SINE MIR 37 237 -25 1881 94 11 0 chr4 11956894 11957160 -190371187 - L1PA8 LINE L1 0 6172 5904 278 248 7 60 chr4 11957324 11957473 -190370874 + GA-rich Low_complexity Low_complexity 1 141 0 255 320 65 20 chr4 11958071 11958224 -190370123 + MIR SINE MIR 94 253 -9 289 253 58 23 chr4 11958460 11958547 -190369800 - MLT1L LTR MaLR -325 290 201 192 316 61 26 chr4 11958943 11959057 -190369290 + MIR SINE MIR 6 123 -139 192 341 32 41 chr4 11959120 11959243 -190369104 + L2 LINE L2 3187 3308 -5 324 299 128 48 chr4 11959728 11959979 -190368368 + MLT1I LTR MaLR 40 310 -99 217 358 159 6 chr4 11961111 11961287 -190367060 - MIR SINE MIR -13 249 47 203 304 0 0 chr4 11962206 11962262 -190366085 + (CA)n Simple_repeat Simple_repeat 1 56 0 481 214 89 9 chr4 11962389 11962501 -190365846 + 5S rRNA rRNA 1 121 0 1483 226 19 19 chr4 11963370 11963733 -190364614 - MLT1A1 LTR MaLR 0 365 3 203 306 41 20 chr4 11964277 11964375 -190363972 - MIR3 SINE MIR -104 104 5 523 278 37 49 chr4 11964483 11964728 -190363619 - MIR SINE MIR -1 261 20 25 31 0 0 chr4 11964777 11964809 -190363538 + AT_rich Low_complexity Low_complexity 1 32 0 217 258 72 10 chr4 11965324 11965421 -190362926 + L2 LINE L2 3199 3301 -12 2171 106 0 3 chr4 11965628 11965939 -190362408 - AluSg SINE Alu 0 310 1 396 296 66 18 chr4 11966550 11966776 -190361571 + MER102a DNA MER1_type 94 330 0 1443 223 13 56 chr4 11966841 11967232 -190361115 - MLT1A2 LTR MaLR 0 374 1 198 311 82 16 chr4 11967400 11967522 -190360825 + MIR3 SINE MIR 34 163 -45 235 273 0 81 chr4 11968213 11968312 -190360035 - MIR SINE MIR 0 262 172 295 308 185 8 chr4 11968685 11968815 -190359532 + MER5A DNA MER1_type 36 188 -1 395 316 76 6 chr4 11970051 11970222 -190358125 - MIR SINE MIR -7 255 73 183 307 99 10 chr4 11970302 11970403 -190357944 + MIR SINE MIR 134 243 -19 189 281 37 37 chr4 11970981 11971063 -190357284 - L2 LINE L2 -5 3267 3186 414 182 40 97 chr4 11972098 11972200 -190356147 + Charlie5 DNA MER1_type 2362 2451 -173 1972 154 0 17 chr4 11972200 11972499 -190355848 + AluSx SINE Alu 1 294 -18 414 182 40 97 chr4 11972499 11972572 -190355775 + Charlie5 DNA MER1_type 2451 2527 -97 458 211 41 8 chr4 11972620 11972743 -190355604 - MIR SINE MIR -59 203 77 248 221 73 0 chr4 11973319 11973387 -190354960 - L1MC4 LINE L1 -1330 6712 6640 187 227 30 0 chr4 11973422 11973488 -190354859 + (TATATG)n Simple_repeat Simple_repeat 2 69 0 213 224 0 0 chr4 11973954 11974012 -190354335 + (CA)n Simple_repeat Simple_repeat 1 58 0 2306 92 14 0 chr4 11974906 11975201 -190353146 + AluSp SINE Alu 1 299 -14 307 215 0 0 chr4 11975518 11975583 -190352764 - MLT1H LTR MaLR -17 532 468 * 452 212 166 72 chr4 11975582 11975775 -190352572 - MLT1H LTR MaLR -228 321 111 1105 200 95 46 chr4 11975984 11976309 -190352038 + MER58B DNA MER1_type 1 341 0 318 237 42 17 chr4 11978815 11978933 -190349414 - MIR SINE MIR -58 204 84 2279 117 0 0 chr4 11980774 11981082 -190347265 + AluSg SINE Alu 1 308 -2 22 0 0 0 chr4 11981082 11981104 -190347243 + AT_rich Low_complexity Low_complexity 1 22 0 244 303 173 12 chr4 11981625 11981787 -190346560 - MIR SINE MIR 0 262 75 262 327 73 9 chr4 11982249 11982359 -190345988 + MIR SINE MIR 25 141 -67 807 259 51 121 chr4 11982559 11983046 -190345301 + LTR16A1 LTR ERVL 1 453 -4 209 298 0 35 chr4 11983432 11983489 -190344858 + L2 LINE L2 3206 3260 -12 193 339 113 11 chr4 11983805 11983982 -190344365 - L3 LINE CR1 -111 1466 1272 430 298 29 12 chr4 11983983 11984154 -190344193 + MIR SINE MIR 7 180 -82 571 255 7 21 chr4 11984317 11984458 -190343889 - MIR SINE MIR -63 199 61 1310 251 92 59 chr4 11984630 11985204 -190343143 + MLT1E LTR MaLR 1 593 0 207 329 37 0 chr4 11985449 11985531 -190342816 - MIR3 SINE MIR -23 185 101 678 244 227 31 chr4 11985774 11986126 -190342221 - MLT1G LTR MaLR 0 590 170 2793 157 10 40 chr4 11987370 11987874 -190340473 - Tigger5 DNA MER2_type 0 2323 1835 1146 219 0 5 chr4 11987878 11988088 -190340259 - Tigger5 DNA MER2_type -2112 211 3 327 246 31 0 chr4 11988094 11988159 -190340188 + MER21B LTR ERV1 23 89 -774 3007 6 0 0 chr4 11988240 11988557 -190339790 - AluYb8 SINE Alu -1 317 1 1134 237 26 82 chr4 11988558 11988900 -190339447 + MER21B LTR ERV1 105 427 -436 * 1577 171 8 8 chr4 11988877 11989141 -190339206 - MSTD LTR MaLR -132 264 1 5976 234 71 75 chr4 11989141 11990882 -190337465 - MSTD-int LTR MaLR 0 1735 2 2034 199 65 0 chr4 11990884 11991256 -190337091 - MSTD LTR MaLR 0 396 1 1199 250 30 31 chr4 11991260 11991624 -190336723 + MER21B LTR ERV1 466 803 -4 43360 36 21 1 chr4 11991779 11997809 -190330538 + L1PA2 LINE L1 3 6155 0 1851 218 35 11 chr4 11998180 11998634 -190329713 + L1MB4 LINE L1 5710 6174 -6 279 133 0 0 chr4 11999453 11999498 -190328849 + (TA)n Simple_repeat Simple_repeat 1 45 0 1133 197 54 47 chr4 11999618 12000079 -190328268 - LTR55 LTR ERV -5 543 2 908 223 43 15 chr4 12000169 12000609 -190327738 - MLT1D LTR MaLR 0 505 3 181 265 0 0 chr4 12000978 12001012 -190327335 - L2 LINE L2 -85 3187 3154 1543 143 87 113 chr4 12001013 12001473 -190326874 - LTR7 LTR ERV1 -2 448 1 4113 174 34 4 chr4 12001516 12002228 -190326119 - ERVL LTR ERVL -1834 3930 3198 209 359 71 12 chr4 12002441 12002611 -190325736 + MIR SINE MIR 83 262 0 192 323 161 19 chr4 12002594 12002749 -190325598 + L2 LINE L2 2977 3153 -160 * 231 277 8 59 chr4 12004221 12004340 -190324007 + (CTGGGG)n Simple_repeat Simple_repeat 3 115 0 418 258 137 0 chr4 12004995 12005119 -190323228 + MIR SINE MIR 29 169 -93 945 199 184 14 chr4 12005282 12005559 -190322788 - MER33 DNA MER1_type 0 324 1 7067 16 9 0 chr4 12005660 12006455 -190321892 - L1PA2 LINE L1 -1 6154 5353 3806 22 0 7 chr4 12006456 12006913 -190321434 + L1PA2 LINE L1 4893 5346 -800 326 279 0 0 chr4 12007986 12008065 -190320282 - L2 LINE L2 -6 3307 3229 335 310 41 41 chr4 12008094 12008239 -190320108 + L2 LINE L2 3169 3313 0 302 355 8 8 chr4 12008389 12008510 -190319837 - MIR SINE MIR -131 131 11 336 167 0 0 chr4 12008714 12008786 -190319561 + GA-rich Low_complexity Low_complexity 3 74 0 203 275 43 14 chr4 12009285 12009354 -190318993 + MIR3 SINE MIR 104 174 -34 409 104 26 13 chr4 12009447 12009524 -190318823 + CT-rich Low_complexity Low_complexity 5 82 0 985 192 0 0 chr4 12009973 12010129 -190318218 - FRAM SINE Alu -21 155 1 236 191 21 0 chr4 12011898 12011945 -190316402 + L2 LINE L2 3261 3308 -5 716 262 41 0 chr4 12012049 12012221 -190316126 + MER97a DNA MER1_type? 1 179 -715 228 316 88 75 chr4 12012353 12012729 -190315618 - L2 LINE L2 0 3313 2933 2400 133 30 25 chr4 12012849 12013211 -190315136 + THE1B LTR MaLR 1 364 0 274 372 0 0 chr4 12013480 12013574 -190314773 - MIR3 SINE MIR -46 162 69 27 49 0 0 chr4 12014337 12014378 -190313969 + AT_rich Low_complexity Low_complexity 1 41 0 7102 167 45 25 chr4 12014677 12015001 -190313346 - Tigger2 DNA MER2_type 0 2718 2402 195 42 0 0 chr4 12015001 12015025 -190313322 + (GGA)n Simple_repeat Simple_repeat 3 26 0 7102 167 45 25 chr4 12015025 12015343 -190313004 - Tigger2 DNA MER2_type -316 2402 2092 198 0 0 0 chr4 12015343 12015365 -190312982 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 7102 167 45 25 chr4 12015365 12016022 -190312325 - Tigger2 DNA MER2_type -626 2092 1393 3399 163 27 13 chr4 12016018 12016638 -190311709 - Tigger2 DNA MER2_type -2089 629 1 * 209 300 0 17 chr4 12017828 12017888 -190310459 + L3 LINE CR1 1258 1316 -261 22 0 0 0 chr4 12017906 12017928 -190310419 + AT_rich Low_complexity Low_complexity 1 22 0 2584 84 14 11 chr4 12018241 12018609 -190309738 - L1P4 LINE L1 -401 5767 5399 1709 83 28 0 chr4 12018609 12018822 -190309525 + L1PA11 LINE L1 5951 6172 -2 272 281 90 0 chr4 12018828 12018917 -190309430 - LTR33 LTR ERVL -424 97 1 2168 140 53 31 chr4 12019018 12019374 -190308973 - THE1B LTR MaLR 0 364 1 338 290 46 8 chr4 12019738 12019869 -190308478 - MIR SINE MIR 0 262 127 1183 279 98 19 chr4 12019876 12020228 -190308119 + LTR16B LTR ERVL 8 400 -64 1334 223 65 46 chr4 12020228 12020595 -190307752 + MLT1A2 LTR MaLR 1 374 0 1183 279 98 19 chr4 12020595 12020662 -190307685 + LTR16B LTR ERVL 400 460 -4 290 320 70 6 chr4 12021059 12021215 -190307132 + MIR SINE MIR 67 232 -30 2526 71 0 0 chr4 12021237 12021548 -190306799 + AluY SINE Alu 1 311 0 359 314 90 16 chr4 12022105 12022293 -190306054 + MIR SINE MIR 49 250 -12 2394 105 0 3 chr4 12022897 12023211 -190305136 - AluSq SINE Alu 0 313 1 646 227 87 43 chr4 12023833 12023888 -190304459 + MIR SINE MIR 57 108 -154 1685 226 43 6 chr4 12023888 12024238 -190304109 + MLT1A1 LTR MaLR 1 363 -2 646 227 87 43 chr4 12024238 12024367 -190303980 + MIR SINE MIR 108 249 -13 308 296 125 11 chr4 12024478 12024654 -190303693 + MIR SINE MIR 25 220 -42 2372 90 0 10 chr4 12024656 12024968 -190303379 + AluY SINE Alu 1 309 -2 186 103 0 0 chr4 12025113 12025142 -190303205 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 349 318 41 35 chr4 12025753 12025923 -190302424 - MIR SINE MIR -76 186 16 1792 194 7 77 chr4 12026432 12026849 -190301498 + MLT1B LTR MaLR 1 388 -2 4315 174 6 17 chr4 12027532 12028316 -190300031 + L1MA8 LINE L1 5513 6288 -3 388 97 14 14 chr4 12028719 12028791 -190299556 + (TG)n Simple_repeat Simple_repeat 1 72 0 1626 186 133 16 chr4 12028884 12029266 -190299081 - MLT1C LTR MaLR -18 449 23 254 356 42 0 chr4 12029288 12029406 -190298941 + MIR SINE MIR 63 185 -77 239 279 0 23 chr4 12030475 12030561 -190297786 - L1MC4 LINE L1 -1339 6703 6620 313 280 133 7 chr4 12031548 12031691 -190296656 + MIR SINE MIR 8 168 -94 316 254 161 17 chr4 12032759 12032877 -190295470 - MIR SINE MIR -125 137 3 307 326 47 8 chr4 12032966 12033095 -190295252 - MIR SINE MIR -70 192 59 358 220 17 127 chr4 12033627 12033745 -190294602 + MIR SINE MIR 49 153 -109 403 321 102 63 chr4 12035016 12035677 -190292670 + L2 LINE L2 2567 3313 0 393 311 93 6 chr4 12036120 12036303 -190292044 + MIR SINE MIR 10 208 -54 203 307 114 23 chr4 12036370 12036458 -190291889 - MIR SINE MIR -136 126 31 187 316 75 128 chr4 12036974 12037240 -190291107 - L2 LINE L2 -34 3238 2987 1601 197 194 21 chr4 12037579 12038006 -190290341 + MLT1D LTR MaLR 5 505 0 267 283 43 43 chr4 12038018 12038145 -190290202 - MIR SINE MIR -62 146 25 228 86 0 0 chr4 12038296 12038331 -190290016 + (A)n Simple_repeat Simple_repeat 1 35 0 473 273 110 53 chr4 12038977 12039186 -190289161 + MLT1H LTR MaLR 326 546 -3 185 189 38 38 chr4 12039190 12039243 -190289104 + L2 LINE L2 1656 1708 -1606 188 239 22 0 chr4 12040328 12040374 -190287973 + L2 LINE L2 3267 3313 0 398 343 20 14 chr4 12040477 12040623 -190287724 - MIR SINE MIR -111 151 5 267 103 0 0 chr4 12040683 12040722 -190287625 + (A)n Simple_repeat Simple_repeat 1 39 0 481 287 94 33 chr4 12041470 12041534 -190286813 + MIR SINE MIR 5 64 -198 1540 242 125 21 chr4 12041534 12042117 -190286230 + LTR48B LTR ERV1 1 644 0 481 287 94 33 chr4 12042117 12042233 -190286114 + MIR SINE MIR 64 196 -66 522 332 135 23 chr4 12042803 12043240 -190285107 + L2 LINE L2 1901 2386 -928 24 0 0 0 chr4 12043327 12043351 -190284996 + AT_rich Low_complexity Low_complexity 1 24 0 207 341 57 11 chr4 12044263 12044351 -190283996 - MIR SINE MIR -140 122 31 27 49 0 0 chr4 12044640 12044681 -190283666 + AT_rich Low_complexity Low_complexity 1 41 0 303 294 33 0 chr4 12044826 12044918 -190283429 - MIR3 SINE MIR -8 200 106 196 373 13 0 chr4 12045315 12045390 -190282957 + MIR SINE MIR 18 93 -169 422 294 102 33 chr4 12045720 12046084 -190282263 - L1ME LINE L1 -352 5769 5381 371 311 165 12 chr4 12046372 12046536 -190281811 + MER5A DNA MER1_type 1 189 0 46 78 0 0 chr4 12046699 12046801 -190281546 + AT_rich Low_complexity Low_complexity 1 102 0 650 323 46 30 chr4 12046801 12047303 -190281044 - L1ME LINE L1 -1303 4843 4334 546 246 15 0 chr4 12047379 12047513 -190280834 - MLT1F1 LTR MaLR 0 593 458 341 125 16 16 chr4 12047527 12047591 -190280756 + L1M2 LINE L1 5685 5748 -543 686 183 172 11 chr4 12047599 12047785 -190280562 - L1PA16 LINE L1 -1 6165 5950 653 226 79 102 chr4 12047786 12048223 -190280124 - MLT1F1 LTR MaLR -138 455 1 335 302 10 0 chr4 12049305 12049401 -190278946 - L2 LINE L2 0 3313 3217 187 179 0 0 chr4 12049481 12049509 -190278838 - L2 LINE L2 -254 3059 3032 254 375 29 47 chr4 12049987 12050264 -190278083 + L2 LINE L2 2804 3075 -197 1369 213 18 18 chr4 12050399 12050685 -190277662 + AluJo SINE Alu 1 286 -26 270 255 88 20 chr4 12050699 12050801 -190277546 + L2 LINE L2 3200 3308 -5 1087 174 27 8 chr4 12050868 12051126 -190277221 - L1MA9 LINE L1 0 6312 6050 957 163 112 20 chr4 12051128 12051305 -190277042 + MSTB LTR MaLR 3 200 -196 1741 183 85 10 chr4 12051305 12051703 -190276644 - MSTA LTR MaLR 0 428 1 957 163 112 20 chr4 12051703 12051739 -190276608 + MSTB LTR MaLR 200 231 -165 7304 173 89 13 chr4 12051739 12053240 -190275107 - MSTA-int LTR MaLR -35 1616 1 2081 159 72 8 chr4 12053240 12053642 -190274705 - MSTA LTR MaLR 0 428 1 1034 172 64 5 chr4 12053647 12053850 -190274497 + MSTB LTR MaLR 212 426 0 3278 164 44 65 chr4 12053851 12054103 -190274244 - L1MA9 LINE L1 -259 6053 5797 1221 200 14 0 chr4 12054103 12054393 -190273954 - L1MA4 LINE L1 -6 6294 6001 3278 164 44 65 chr4 12054393 12054622 -190273725 - L1MA9 LINE L1 -515 5797 5565 1811 158 54 35 chr4 12054622 12054990 -190273357 + THE1C LTR MaLR 1 375 0 3278 164 44 65 chr4 12054990 12055585 -190272762 - L1MA9 LINE L1 -747 5565 5005 2427 236 32 0 chr4 12055583 12056292 -190272055 - L1MA9 LINE L1 -2251 3895 3164 * 484 154 0 0 chr4 12056464 12056542 -190271805 - MLT1C LTR MaLR 0 467 390 370 223 117 0 chr4 12056600 12056703 -190271644 + MLT1H1 LTR MaLR 1 115 -352 289 217 14 0 chr4 12056705 12056774 -190271573 + MLT1C LTR MaLR 398 467 0 351 362 41 23 chr4 12056934 12057155 -190271192 + MIR SINE MIR 12 236 -26 3020 67 10 0 chr4 12057967 12058383 -190269964 - THE1A-int LTR MaLR -1160 420 1 1662 153 7 4 chr4 12058688 12058969 -190269378 - THE1A LTR MaLR -2 353 72 6343 105 0 0 chr4 12058971 12059854 -190268493 + THE1B-int LTR MaLR 698 1580 0 2106 159 5 24 chr4 12059854 12060225 -190268122 + THE1B LTR MaLR 1 364 0 816 292 111 50 chr4 12060231 12060524 -190267823 - L2 LINE L2 -216 3097 2823 288 111 0 0 chr4 12060524 12060569 -190267778 + (TTCA)n Simple_repeat Simple_repeat 4 48 0 1684 172 7 0 chr4 12060576 12060855 -190267492 - AluJb SINE Alu -21 291 11 816 292 111 50 chr4 12060855 12061090 -190267257 - L2 LINE L2 -495 2818 2534 186 250 125 16 chr4 12061123 12061187 -190267160 + MIR SINE MIR 171 241 -21 350 262 19 28 chr4 12061274 12061305 -190267042 + CT-rich Low_complexity Low_complexity 2 32 -75 1916 129 22 0 chr4 12061305 12061576 -190266771 - AluSq SINE Alu -13 300 24 350 262 19 28 chr4 12061576 12061651 -190266696 + CT-rich Low_complexity Low_complexity 32 107 0 456 320 59 39 chr4 12061676 12061932 -190266415 + MIR SINE MIR 2 262 0 271 362 70 62 chr4 12062023 12062280 -190266067 - L2 LINE L2 -94 3178 2920 903 211 36 10 chr4 12062906 12063100 -190265247 - MER58A DNA MER1_type 0 224 26 1331 269 27 18 chr4 12063612 12064054 -190264293 + MLT1H1 LTR MaLR 102 547 -8 223 191 43 21 chr4 12064246 12064293 -190264054 + L2 LINE L2 3023 3070 -202 304 277 12 0 chr4 12064631 12064714 -190263633 - MLT1I LTR MaLR -15 394 311 386 247 86 40 chr4 12064824 12064998 -190263349 - MLT1J2 LTR MaLR -227 223 42 820 211 32 11 chr4 12065219 12065404 -190262943 + MER20 DNA MER1_type 30 218 -1 234 330 70 55 chr4 12065434 12065634 -190262713 - MLT1I LTR MaLR -204 345 143 650 289 80 22 chr4 12065822 12066047 -190262300 + MIR SINE MIR 12 249 -13 408 293 50 20 chr4 12066267 12066465 -190261882 + L3 LINE CR1 1221 1424 -153 257 256 70 54 chr4 12066606 12066735 -190261612 - LTR16C LTR ERVL -166 325 195 243 364 34 0 chr4 12067236 12067324 -190261023 + MIR SINE MIR 80 170 -92 314 322 14 28 chr4 12067616 12067759 -190260588 + MIR3 SINE MIR 62 202 -6 1967 138 21 58 chr4 12067765 12067834 -190260513 - THE1B LTR MaLR 0 364 294 1995 134 7 0 chr4 12067834 12068161 -190260186 - AluSq SINE Alu 0 329 1 1967 138 21 58 chr4 12068161 12068468 -190259879 - THE1B LTR MaLR -70 294 1 266 303 101 0 chr4 12070134 12070253 -190258094 - MIR3 SINE MIR -48 160 30 29 0 0 0 chr4 12070467 12070496 -190257851 + AT_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr4 12070917 12070937 -190257410 + (T)n Simple_repeat Simple_repeat 1 20 0 258 287 0 35 chr4 12071082 12071169 -190257178 + L2 LINE L2 3221 3304 -9 311 215 51 0 chr4 12071903 12071982 -190256365 + MER103 DNA DNA 17 99 -67 433 323 64 48 chr4 12072521 12073015 -190255332 - L2 LINE L2 -7 3265 2780 432 0 0 0 chr4 12073015 12073063 -190255284 + (TAA)n Simple_repeat Simple_repeat 2 49 0 433 323 64 48 chr4 12073063 12073095 -190255252 - L2 LINE L2 -492 2780 1960 342 362 59 0 chr4 12073384 12073536 -190254811 + MIR3 SINE MIR 21 181 -27 843 275 173 20 chr4 12073819 12074212 -190254135 - MLT1F LTR MaLR -2 540 88 266 185 0 19 chr4 12074989 12075043 -190253304 + MLT1F1 LTR MaLR 69 121 -446 676 209 72 121 chr4 12075044 12075407 -190252940 + MLT1F1 LTR MaLR 223 567 0 319 250 39 16 chr4 12075413 12075541 -190252806 + MER113 DNA MER1_type? 63 193 -328 314 329 56 14 chr4 12075610 12075753 -190252594 + MIR3 SINE MIR 20 168 -40 180 111 0 0 chr4 12075794 12075821 -190252526 + (TAA)n Simple_repeat Simple_repeat 2 28 0 248 344 32 21 chr4 12075874 12075967 -190252380 - MIR SINE MIR -147 115 22 2154 136 27 41 chr4 12076902 12077271 -190251076 - THE1B LTR MaLR 0 364 1 317 297 45 0 chr4 12078201 12078312 -190250035 + L1ME LINE L1 5727 5842 -279 301 268 125 18 chr4 12079023 12079135 -190249212 + MIR3 SINE MIR 63 186 -22 416 288 220 17 chr4 12079334 12079511 -190248836 - MIR SINE MIR -5 257 45 1985 123 16 16 chr4 12079688 12079996 -190248351 + AluSq SINE Alu 4 311 -2 799 144 11 28 chr4 12080015 12080195 -190248152 + GA-rich Low_complexity Low_complexity 2 178 0 1107 246 32 7 chr4 12080341 12080626 -190247721 - MER87 LTR ERV1 -53 488 197 321 317 57 0 chr4 12081004 12081127 -190247220 - MIR SINE MIR -113 149 20 1905 168 27 0 chr4 12081294 12081592 -190246755 + AluSx SINE Alu 1 306 -6 260 271 76 17 chr4 12082158 12082276 -190246071 - L2 LINE L2 -237 3035 2911 321 283 158 39 chr4 12082296 12082498 -190245849 - MIR SINE MIR -13 249 20 206 61 0 30 chr4 12082671 12082704 -190245643 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 883 145 0 0 chr4 12082708 12082832 -190245515 - AluJb SINE Alu -188 124 1 1947 142 3 0 chr4 12083030 12083374 -190244973 - AluSx SINE Alu 0 345 1 1492 159 58 48 chr4 12083410 12083705 -190244642 + AluSx SINE Alu 1 298 -14 25 0 0 0 chr4 12084252 12084277 -190244070 + AT_rich Low_complexity Low_complexity 1 25 0 1502 91 55 0 chr4 12084462 12084681 -190243666 - L1PA11 LINE L1 -4 6170 5940 2476 76 0 0 chr4 12086020 12086324 -190242023 - AluY SINE Alu -7 304 1 212 313 9 8 chr4 12086835 12086977 -190241370 - MIR3 SINE MIR -1 207 91 280 269 32 43 chr4 12087125 12087218 -190241129 - MIR SINE MIR -48 214 123 399 243 20 169 chr4 12087808 12088158 -190240189 + L2 LINE L2 3012 3309 -4 205 279 93 12 chr4 12088841 12088927 -190239420 - MIR SINE MIR -54 208 116 3960 190 47 22 chr4 12089281 12090248 -190238099 + L1MC2 LINE L1 5341 6331 -13 238 171 32 32 chr4 12091112 12091235 -190237112 + (TA)n Simple_repeat Simple_repeat 2 124 0 45 0 0 0 chr4 12091297 12091342 -190237005 + AT_rich Low_complexity Low_complexity 1 45 0 362 209 41 35 chr4 12091487 12091659 -190236688 + (TTATA)n Simple_repeat Simple_repeat 5 177 0 * 374 206 33 33 chr4 12091591 12091771 -190236576 + (TA)n Simple_repeat Simple_repeat 1 180 0 183 302 19 0 chr4 12093014 12093067 -190235280 + L2 LINE L2 3018 3071 -201 212 306 42 0 chr4 12093126 12093198 -190235149 + MIR SINE MIR 18 92 -170 533 294 59 43 chr4 12093643 12093898 -190234449 + MIR SINE MIR 1 259 -3 214 330 29 72 chr4 12093914 12094123 -190234224 - L2 LINE L2 -218 3054 2855 726 208 83 42 chr4 12094160 12094401 -190233946 + AluSg SINE Alu 1 251 -59 361 112 17 60 chr4 12095393 12095509 -190232838 + (GAA)n Simple_repeat Simple_repeat 2 112 0 223 316 13 13 chr4 12096866 12096945 -190231402 + MIR SINE MIR 15 93 -169 352 366 43 26 chr4 12098166 12098398 -190229949 - L2 LINE L2 -462 2852 2617 180 0 0 0 chr4 12098785 12098805 -190229542 + (CA)n Simple_repeat Simple_repeat 2 21 0 728 275 94 26 chr4 12099874 12100183 -190228164 + LTR33 LTR ERVL 14 343 -178 930 269 97 17 chr4 12100213 12100733 -190227614 - L2 LINE L2 -45 3268 2713 263 85 21 0 chr4 12100733 12100780 -190227567 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 1770 133 0 27 chr4 12100783 12101076 -190227271 - AluSx SINE Alu -27 285 1 344 232 14 84 chr4 12101341 12101418 -190226929 + MLT1L LTR MaLR 134 198 -417 1998 135 14 3 chr4 12101418 12101715 -190226632 + AluSx SINE Alu 1 300 -12 344 232 14 84 chr4 12101715 12101779 -190226568 + MLT1L LTR MaLR 198 265 -350 804 276 14 9 chr4 12102141 12102362 -190225985 - MER58A DNA MER1_type -1 223 2 27 73 0 0 chr4 12102444 12102499 -190225848 + AT_rich Low_complexity Low_complexity 1 55 0 191 267 58 35 chr4 12103580 12103666 -190224681 + MIR3 SINE MIR 83 170 -38 4075 112 7 3 chr4 12103803 12104409 -190223938 - L1PA7 LINE L1 -13 6141 5534 21 0 0 0 chr4 12106055 12106076 -190222271 + AT_rich Low_complexity Low_complexity 1 21 0 2372 108 0 0 chr4 12106105 12106411 -190221936 - AluSg SINE Alu -4 306 1 2280 66 7 7 chr4 12106880 12107183 -190221164 - AluYa5 SINE Alu -8 303 1 2105 121 22 24 chr4 12157645 12158016 -190170331 + L1MA3 LINE L1 5936 6305 0 2191 192 42 32 chr4 12158023 12158621 -190169726 + L1MA6 LINE L1 5697 6300 0 23 0 0 0 chr4 12158959 12158982 -190169365 + AT_rich Low_complexity Low_complexity 1 23 0 39659 40 36 5 chr4 12159170 12164410 -190163937 + L1P LINE L1 2 5403 -743 14611 107 15 17 chr4 12164520 12167456 -190160891 - HERVH LTR ERV1 -4726 2987 1 3054 89 4 30 chr4 12167458 12167918 -190160429 - LTR7 LTR ERV1 -2 448 1 219 298 46 17 chr4 12168703 12168829 -190159518 - MIR SINE MIR -63 145 53 346 246 59 68 chr4 12169042 12169160 -190159187 - MIR SINE MIR -60 202 86 941 198 77 30 chr4 12169285 12169583 -190158764 - L1MC3 LINE L1 -3 7782 7471 1107 189 15 0 chr4 12169584 12169790 -190158557 - L1MC3 LINE L1 -498 7287 7079 481 158 17 0 chr4 12169970 12170090 -190158257 + (TA)n Simple_repeat Simple_repeat 1 122 0 841 167 40 7 chr4 12170108 12170258 -190158089 - MSTB LTR MaLR -58 368 214 2774 267 49 19 chr4 12170265 12171435 -190156912 - L1M4 LINE L1 -1822 4324 3120 198 352 42 0 chr4 12171750 12171821 -190156526 + L2 LINE L2 3234 3307 -6 2093 142 20 6 chr4 12172674 12173020 -190155327 + THE1B LTR MaLR 1 351 -13 231 394 36 16 chr4 12173413 12173606 -190154741 - L2 LINE L2 -182 3090 2894 191 333 0 0 chr4 12173720 12173771 -190154576 + L2 LINE L2 3218 3268 -4 24 0 0 0 chr4 12174071 12174095 -190154252 + AT_rich Low_complexity Low_complexity 1 24 0 1205 218 132 32 chr4 12174394 12174934 -190153413 + MER67B LTR ERV1 43 511 -3 3148 49 0 0 chr4 12174954 12175340 -190153007 - L1PA3 LINE L1 0 6155 5770 2144 38 4 0 chr4 12175403 12175666 -190152681 - L1PA2 LINE L1 0 6155 5892 521 161 21 0 chr4 12175766 12175859 -190152488 + HERVH LTR ERV1 3196 3290 -4423 * 3053 137 0 6 chr4 12175849 12176354 -190151993 + HERVH LTR ERV1 3492 3993 -3720 4067 151 0 1 chr4 12176356 12177019 -190151328 + HERVH LTR ERV1 4488 5149 -2564 1243 138 18 9 chr4 12177020 12177238 -190151109 + HERVH LTR ERV1 5600 5819 -1894 2262 90 48 13 chr4 12177238 12177615 -190150732 + HERVH LTR ERV1 7324 7713 0 2037 104 5 5 chr4 12177615 12177974 -190150373 + LTR7 LTR ERV1 1 448 -2 21 0 0 0 chr4 12178724 12178745 -190149602 + AT_rich Low_complexity Low_complexity 1 21 0 995 88 15 0 chr4 12180441 12180578 -190147769 + AluSc SINE Alu 165 303 -6 2089 192 17 19 chr4 12180600 12181068 -190147279 + L1MB5 LINE L1 5658 6124 -50 858 203 39 0 chr4 12181069 12181276 -190147071 + L1MA6 LINE L1 6067 6281 -19 934 235 119 92 chr4 12182631 12182797 -190145550 - MLT1F1 LTR MaLR 0 567 407 1678 138 32 21 chr4 12182797 12183132 -190145215 + AluSx SINE Alu 1 338 0 934 235 119 92 chr4 12183132 12183504 -190144843 - MLT1F1 LTR MaLR -160 407 3 313 295 25 16 chr4 12183576 12183698 -190144649 + MIR SINE MIR 69 191 -71 2339 60 0 0 chr4 12184575 12184886 -190143461 - AluY SINE Alu 0 311 1 1947 90 4 8 chr4 12186142 12186398 -190141949 - AluY SINE Alu -13 298 44 642 200 97 0 chr4 12186399 12186554 -190141793 - L1MC1 LINE L1 -9 6324 6155 340 336 25 17 chr4 12186999 12187118 -190141229 + MIR SINE MIR 12 131 -131 217 345 69 28 chr4 12187119 12187264 -190141083 - L2 LINE L2 -1 3312 3162 317 332 147 22 chr4 12187442 12187762 -190140585 - L2 LINE L2 -251 3062 2702 854 291 156 44 chr4 12188616 12189449 -190138898 - L2 LINE L2 0 3313 2339 1145 201 38 112 chr4 12189672 12190066 -190138281 + MLT1A1 LTR MaLR 1 365 0 721 281 74 157 chr4 12190623 12191978 -190136369 + L2 LINE L2 1429 2671 -643 5517 149 10 16 chr4 12192110 12193086 -190135261 - L1MA4 LINE L1 -14 6286 5317 787 184 29 0 chr4 12193088 12193224 -190135123 - FRAM SINE Alu -45 131 1 2741 184 35 2 chr4 12193573 12194123 -190134224 - L1MA4 LINE L1 -873 5273 4706 387 127 0 0 chr4 12194207 12194270 -190134077 + (TCCC)n Simple_repeat Simple_repeat 1 63 0 22 0 0 0 chr4 12194321 12194343 -190134004 + AT_rich Low_complexity Low_complexity 1 22 0 1708 212 132 42 chr4 12194744 12194778 -190133569 - MLT2B1 LTR ERVL 0 520 490 441 0 0 0 chr4 12194778 12194827 -190133520 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 1708 212 132 42 chr4 12194827 12195269 -190133078 - MLT2B1 LTR ERVL -30 490 1 1413 303 95 9 chr4 12195520 12196065 -190132282 - MLT1E2 LTR MaLR -3 623 32 * 1504 233 85 23 chr4 12196030 12196429 -190131918 + MLT2B1 LTR ERVL 7 430 -90 239 232 0 18 chr4 12196532 12196588 -190131759 - MLT1E2 LTR MaLR -438 67 13 23 33 0 0 chr4 12199546 12199576 -190128771 + AT_rich Low_complexity Low_complexity 1 30 0 2514 78 28 8 chr4 12199576 12199934 -190128413 - L1PA8A LINE L1 -5 6126 5762 497 304 93 78 chr4 12200019 12200992 -190127355 + L1ME4a LINE L1 4404 5391 -755 432 332 108 31 chr4 12201035 12201696 -190126651 - L2 LINE L2 0 3313 2595 339 289 60 48 chr4 12201867 12202116 -190126231 + L1ME4a LINE L1 5575 5826 -295 22 56 0 0 chr4 12202201 12202237 -190126110 + AT_rich Low_complexity Low_complexity 1 36 0 31 26 0 0 chr4 12202298 12202336 -190126011 + AT_rich Low_complexity Low_complexity 1 38 0 374 364 54 29 chr4 12202636 12202916 -190125431 + L2 LINE L2 2986 3272 0 3927 180 36 34 chr4 12202991 12203853 -190124494 + L1MC2 LINE L1 5373 6236 -108 238 348 130 29 chr4 12204082 12204604 -190123743 + L2 LINE L2 2710 3290 -23 375 289 43 75 chr4 12204665 12204852 -190123495 + MIR3 SINE MIR 21 201 -7 201 176 0 0 chr4 12205129 12205163 -190123184 + T-rich Low_complexity Low_complexity 1 34 0 2130 148 97 8 chr4 12206546 12206939 -190121408 + MSTA LTR MaLR 1 428 0 212 77 26 0 chr4 12207135 12207174 -190121173 + (CA)n Simple_repeat Simple_repeat 1 40 0 21 0 0 0 chr4 12208204 12208225 -190120122 + AT_rich Low_complexity Low_complexity 1 21 0 2089 113 0 7 chr4 12208240 12208533 -190119814 - AluSc SINE Alu -18 291 1 204 40 0 0 chr4 12208538 12208563 -190119784 + (T)n Simple_repeat Simple_repeat 1 25 0 1948 187 6 0 chr4 12208903 12209234 -190119113 - MER7A DNA MER2_type -12 334 4 205 318 182 0 chr4 12209446 12209556 -190118791 - L2 LINE L2 -1 3312 3183 386 276 23 0 chr4 12209608 12209695 -190118652 - L2 LINE L2 -257 3056 2968 380 315 31 8 chr4 12209771 12209901 -190118446 - MER94 DNA DNA 0 134 2 383 245 89 29 chr4 12210582 12210707 -190117640 + FLAM_A SINE Alu 13 131 -2 1921 193 28 96 chr4 12210846 12211464 -190116883 - L1MB7 LINE L1 -16 6168 5593 214 297 44 22 chr4 12211467 12211558 -190116789 - L3 LINE CR1 -681 896 804 1751 161 3 43 chr4 12211567 12211889 -190116458 + AluJb SINE Alu 1 309 -3 220 285 99 63 chr4 12211889 12212101 -190116246 + L2 LINE L2 3080 3302 -11 366 264 88 8 chr4 12214025 12214150 -190114197 - L2 LINE L2 0 3313 3179 2106 117 0 0 chr4 12214305 12214621 -190113726 - AluSc SINE Alu 0 316 1 205 373 67 0 chr4 12214771 12214846 -190113501 + L2 LINE L2 3138 3217 -55 192 77 0 0 chr4 12215767 12215793 -190112554 + (T)n Simple_repeat Simple_repeat 1 26 0 454 269 55 43 chr4 12215895 12216152 -190112195 + L1ME4a LINE L1 5624 5883 -238 1051 205 63 57 chr4 12216401 12216718 -190111629 + MLT1A2 LTR MaLR 1 319 -55 2373 80 0 3 chr4 12216718 12217020 -190111327 + AluY SINE Alu 1 301 -10 2665 73 6 0 chr4 12217023 12217379 -190110968 + L1PA13 LINE L1 5803 6160 -3 3881 30 0 0 chr4 12217626 12218101 -190110246 - L1PA4 LINE L1 -792 5354 4880 6488 32 6 0 chr4 12218102 12218878 -190109469 + L1PA4 LINE L1 5375 6155 0 204 340 21 28 chr4 12219184 12219328 -190109019 - L2 LINE L2 -12 3301 3159 265 310 102 19 chr4 12219337 12219857 -190108490 + L1MC4a LINE L1 3724 4286 -1860 482 0 17 0 chr4 12219882 12219940 -190108407 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 31 58 0 0 chr4 12220819 12220871 -190107476 + AT_rich Low_complexity Low_complexity 1 52 0 337 257 176 65 chr4 12221125 12221236 -190107111 + L1MC4a LINE L1 5619 5716 -2092 1515 99 27 5 chr4 12221236 12221459 -190106888 - MER30 DNA MER1_type 0 230 3 337 257 176 65 chr4 12221459 12221608 -190106739 + L1MC4a LINE L1 5716 5908 -1900 200 226 0 16 chr4 12221614 12221676 -190106671 + (TTTA)n Simple_repeat Simple_repeat 3 63 0 279 329 134 24 chr4 12222885 12223049 -190105298 - MIR3 SINE MIR -19 189 8 214 288 0 0 chr4 12223327 12223386 -190104961 + A-rich Low_complexity Low_complexity 1 59 0 234 0 0 0 chr4 12223762 12223788 -190104559 + (TG)n Simple_repeat Simple_repeat 2 27 0 452 284 61 6 chr4 12224050 12224213 -190104134 + MIR SINE MIR 16 185 -62 499 289 25 1 chr4 12224260 12224490 -190103857 - MER67A LTR ERV1 0 543 273 681 173 14 125 chr4 12224631 12224839 -190103508 - MER67B LTR ERV1 -437 224 40 5532 113 1 5 chr4 12224839 12225612 -190102735 + THE1B-int LTR MaLR 811 1580 0 1859 158 58 0 chr4 12225612 12225954 -190102393 + THE1B LTR MaLR 1 362 -2 4131 151 89 7 chr4 12227655 12228416 -190099931 + LTR1B LTR ERV1 3 826 0 236 301 62 106 chr4 12228587 12228813 -190099534 + MIR SINE MIR 20 235 -27 47 73 0 0 chr4 12228831 12228927 -190099420 + AT_rich Low_complexity Low_complexity 1 96 0 299 224 0 10 chr4 12229102 12229200 -190099147 + CT-rich Low_complexity Low_complexity 2 98 0 247 296 37 0 chr4 12230854 12230935 -190097412 - MIR3 SINE MIR -9 199 116 292 252 176 17 chr4 12231379 12231498 -190096849 - MIR SINE MIR -86 176 39 211 285 39 69 chr4 12231711 12231841 -190096506 - L2 LINE L2 0 3313 3188 1770 106 0 4 chr4 12232140 12232394 -190095953 + L1PA12 LINE L1 5901 6153 -15 207 133 0 0 chr4 12232910 12232955 -190095392 + (TTTTTG)n Simple_repeat Simple_repeat 2 46 0 258 302 85 9 chr4 12233119 12233225 -190095122 - MIR SINE MIR -95 167 54 690 291 46 12 chr4 12233392 12233633 -190094714 + MIR SINE MIR 14 262 0 195 377 41 0 chr4 12234009 12234131 -190094216 - MIR SINE MIR -75 187 61 794 268 6 0 chr4 12234332 12234515 -190093832 + MER58A DNA MER1_type 41 224 0 240 35 0 0 chr4 12235670 12235699 -190092648 + (A)n Simple_repeat Simple_repeat 1 29 0 186 319 43 53 chr4 12237299 12237393 -190090954 - MER5A DNA MER1_type -68 121 29 1964 129 21 0 chr4 12237712 12237998 -190090349 - AluSx SINE Alu -20 292 1 29 47 0 0 chr4 12238026 12238069 -190090278 + AT_rich Low_complexity Low_complexity 1 43 0 253 261 152 11 chr4 12238314 12238406 -190089941 + MER114 LTR ERV 1 105 -543 988 213 122 3 chr4 12238487 12238806 -190089541 + MER114 LTR ERV 196 552 -96 2588 187 12 8 chr4 12240391 12240905 -190087442 - L1MC1 LINE L1 -1 6332 5817 219 69 0 0 chr4 12240915 12240944 -190087403 + (TA)n Simple_repeat Simple_repeat 2 30 0 749 158 36 0 chr4 12240984 12241123 -190087224 - L1PA16 LINE L1 -9 6157 6014 1624 177 65 19 chr4 12241127 12241527 -190086820 - THE1C LTR MaLR 0 428 1 9270 129 19 42 chr4 12241527 12243142 -190085205 - THE1C-int LTR MaLR 0 1580 3 1621 176 49 43 chr4 12243148 12243517 -190084830 - THE1C LTR MaLR -4 371 1 1994 148 21 0 chr4 12243517 12243849 -190084498 - L1PA16 LINE L1 -152 6014 5676 745 181 16 85 chr4 12243849 12244037 -190084310 - FAM SINE Alu 0 175 1 1551 180 41 0 chr4 12244175 12244470 -190083877 - L1MC1 LINE L1 -527 5806 5500 2164 68 0 31 chr4 12244885 12245200 -190083147 + AluY SINE Alu 1 306 0 197 132 26 0 chr4 12246005 12246043 -190082304 + (TA)n Simple_repeat Simple_repeat 2 40 0 316 342 89 20 chr4 12246555 12246757 -190081590 + L1MC4 LINE L1 5521 5736 -2072 301 247 22 22 chr4 12246796 12246885 -190081462 + L1MC4 LINE L1 6615 6703 -1339 213 39 0 0 chr4 12246941 12246967 -190081380 + (TG)n Simple_repeat Simple_repeat 2 27 0 2096 131 0 13 chr4 12247057 12247369 -190080978 - AluSg SINE Alu -2 308 1 965 167 29 6 chr4 12247371 12247545 -190080802 - MLT1B LTR MaLR -212 178 1 1766 154 13 26 chr4 12248438 12248743 -190079604 - AluSx SINE Alu -10 302 2 278 354 7 49 chr4 12248764 12248908 -190079439 - MIR3 SINE MIR -14 194 57 191 273 146 36 chr4 12251019 12251129 -190077218 + MIR SINE MIR 32 153 -109 2223 92 0 35 chr4 12251615 12251932 -190076415 + AluSg SINE Alu 1 306 -4 225 0 0 0 chr4 12252589 12252614 -190075733 + (TA)n Simple_repeat Simple_repeat 1 25 0 951 215 82 90 chr4 12253168 12253536 -190074811 - MLT1A1 LTR MaLR 0 365 1 351 0 0 0 chr4 12253706 12253745 -190074602 + (TG)n Simple_repeat Simple_repeat 1 39 0 796 164 82 0 chr4 12254965 12255160 -190073187 - L1P LINE L1 -2877 3269 3059 1971 232 13 2 chr4 12256016 12256413 -190071934 + MER72 LTR ERV1 322 722 0 1644 263 34 27 chr4 12256414 12257092 -190071255 - L1ME1 LINE L1 -292 5874 5193 277 352 91 30 chr4 12257640 12257870 -190070477 - MLT1K LTR MaLR -286 302 59 279 0 0 0 chr4 12257879 12257910 -190070437 + (A)n Simple_repeat Simple_repeat 1 31 0 262 269 51 13 chr4 12258385 12258463 -190069884 + MIR3 SINE MIR 82 162 -46 218 314 14 14 chr4 12258465 12258535 -190069812 - L2 LINE L2 -4 3268 3199 25218 92 12 35 chr4 12259846 12263732 -190064615 + L1P LINE L1 1550 5347 -799 1093 57 7 0 chr4 12263734 12263875 -190064472 + L1PA7 LINE L1 6008 6149 -5 3416 246 52 21 chr4 12263882 12265139 -190063208 + L1MA9 LINE L1 2260 3555 -2591 3448 220 59 12 chr4 12265142 12266148 -190062199 + L1MA9 LINE L1 4407 5485 -827 4020 136 26 80 chr4 12266148 12266977 -190061370 + LTR1 LTR ERV1 1 785 0 3448 220 59 12 chr4 12266977 12267246 -190061101 + L1MA9 LINE L1 5485 5740 -572 422 33 0 33 chr4 12267252 12267313 -190061034 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 988 269 13 16 chr4 12267334 12267643 -190060704 - L1 LINE L1 -2170 3976 3669 655 144 35 11 chr4 12267643 12267817 -190060530 + (TA)n Simple_repeat Simple_repeat 2 179 0 1513 243 40 28 chr4 12267830 12268329 -190060018 + L1MA9 LINE L1 5770 6274 -38 211 310 20 40 chr4 12268541 12268641 -190059706 + L2 LINE L2 3216 3313 0 290 286 168 6 chr4 12268975 12269136 -190059211 - LTR16C LTR ERVL -8 483 297 503 240 152 54 chr4 12269963 12270006 -190058341 + MER58A DNA MER1_type 1 38 -2382 2244 112 0 3 chr4 12270006 12270309 -190058038 + AluSq SINE Alu 1 302 -11 503 240 152 54 chr4 12270309 12270469 -190057878 + MER58A DNA MER1_type 38 224 0 1750 140 27 10 chr4 12271620 12271912 -190056435 - AluSq SINE Alu -6 307 11 958 121 80 2 chr4 12272112 12272351 -190055996 - MER4E LTR ERV1 0 766 460 1339 98 0 0 chr4 12272352 12272536 -190055811 - MER41A LTR ERV1 0 554 371 2671 173 136 25 chr4 12273039 12273693 -190054654 - LTR8A LTR ERV1 0 727 1 2675 113 76 2 chr4 12274061 12274494 -190053853 + MER4C LTR ERV1 1 465 0 476 250 8 23 chr4 12274625 12274753 -190053594 + MER4B LTR ERV1 1 126 -484 3749 90 47 8 chr4 12274765 12275298 -190053049 + MER41A LTR ERV1 1 554 0 227 167 0 125 chr4 12275298 12275370 -190052977 - MLT1A1 LTR MaLR -298 67 5 23 54 0 0 chr4 12275588 12275625 -190052722 + AT_rich Low_complexity Low_complexity 1 37 0 289 292 28 21 chr4 12275656 12275800 -190052547 + L1MEc LINE L1 57 201 -6195 378 0 0 0 chr4 12275937 12275979 -190052368 + (CA)n Simple_repeat Simple_repeat 2 43 0 359 304 63 0 chr4 12276329 12276487 -190051860 + L1MEc LINE L1 776 943 -5453 205 109 36 36 chr4 12276498 12276553 -190051794 + (TA)n Simple_repeat Simple_repeat 2 56 0 376 264 49 28 chr4 12276572 12276716 -190051631 + L1MEc LINE L1 1362 1508 -4888 815 255 30 38 chr4 12276736 12277003 -190051344 + MLT2D LTR ERVL 73 337 -77 243 0 0 0 chr4 12277003 12277030 -190051317 + (CA)n Simple_repeat Simple_repeat 1 27 0 695 295 65 21 chr4 12277072 12277455 -190050892 + L1MEc LINE L1 1532 1931 -4465 344 312 53 12 chr4 12277465 12277635 -190050712 + LTR41 LTR ERVL 11 187 -586 704 322 25 52 chr4 12277879 12278283 -190050064 + HERVL LTR ERVL 1722 2114 -3540 1061 289 68 24 chr4 12278284 12278949 -190049398 + L1MEc LINE L1 3358 4051 -2164 1669 184 39 91 chr4 12279149 12279588 -190048759 + MSTB1 LTR MaLR 17 432 0 21 0 0 0 chr4 12280340 12280361 -190047986 + AT_rich Low_complexity Low_complexity 1 21 0 615 295 63 0 chr4 12280847 12281037 -190047310 + MER63A DNA MER1_type 9 210 0 285 257 0 37 chr4 12281237 12281346 -190047001 + (TA)n Simple_repeat Simple_repeat 1 105 0 297 253 69 0 chr4 12281370 12281457 -190046890 + L1ME1 LINE L1 6069 6161 -5 240 184 0 0 chr4 12282176 12282225 -190046122 + (TA)n Simple_repeat Simple_repeat 1 49 0 547 297 40 52 chr4 12282475 12282822 -190045525 - MARNA DNA Mariner -101 485 143 30 0 0 0 chr4 12283246 12283276 -190045071 + AT_rich Low_complexity Low_complexity 1 30 0 2105 82 32 4 chr4 12284357 12284636 -190043711 - AluY SINE Alu -24 287 1 1911 134 7 10 chr4 12285609 12285916 -190042431 - AluSq SINE Alu -7 306 1 336 279 0 0 chr4 12286595 12286681 -190041666 + MER33 DNA MER1_type 1 86 -238 513 201 107 60 chr4 12286724 12286958 -190041389 + MER33 DNA MER1_type 118 362 -1 265 354 0 12 chr4 12287168 12287250 -190041097 - L2 LINE L2 -1 3271 3191 1379 170 11 26 chr4 12288504 12288529 -190039818 - L1PA10 LINE L1 -307 5861 5837 2552 151 7 0 chr4 12288529 12288961 -190039386 - L1PA13 LINE L1 0 6163 5729 1379 170 11 26 chr4 12288961 12289206 -190039141 - L1PA10 LINE L1 -331 5837 5595 1295 132 5 0 chr4 12289307 12289496 -190038851 - AluYb8 SINE Alu -128 190 1 1968 184 49 3 chr4 12290389 12290754 -190037593 + MLT1B LTR MaLR 9 390 0 2146 83 0 10 chr4 12291462 12291751 -190036596 + AluY SINE Alu 1 286 -25 706 271 17 64 chr4 12292054 12292142 -190036205 - MIR SINE MIR -34 228 137 1916 124 0 79 chr4 12292142 12292457 -190035890 + AluSx SINE Alu 7 296 -16 706 271 17 64 chr4 12292457 12292604 -190035743 - MIR SINE MIR -125 137 4 307 317 16 16 chr4 12293195 12293318 -190035029 + MIR SINE MIR 140 262 0 201 74 0 0 chr4 12294201 12294228 -190034119 + (T)n Simple_repeat Simple_repeat 1 27 0 1938 142 71 11 chr4 12294827 12295180 -190033167 - THE1C LTR MaLR -1 374 1 270 0 0 0 chr4 12297310 12297340 -190031007 + (TG)n Simple_repeat Simple_repeat 1 30 0 687 272 31 26 chr4 12297944 12298172 -190030175 + MIR SINE MIR 30 258 -4 3261 163 0 11 chr4 12298269 12298802 -190029545 + MER1A DNA MER1_type 1 527 0 23 0 0 0 chr4 12299725 12299748 -190028599 + AT_rich Low_complexity Low_complexity 1 23 0 1942 162 21 29 chr4 12300300 12300640 -190027707 - MER1B DNA MER1_type 0 337 1 900 195 15 45 chr4 12301670 12301870 -190026477 - MER72 LTR ERV1 -528 194 1 452 253 25 101 chr4 12301870 12302169 -190026178 + L1ME2 LINE L1 5875 6155 -7 1857 258 60 27 chr4 12302180 12302787 -190025560 + L1ME1 LINE L1 5106 5763 -403 2024 150 97 8 chr4 12302787 12303180 -190025167 - MSTA LTR MaLR 0 428 1 1857 258 60 27 chr4 12303180 12303563 -190024784 + L1ME1 LINE L1 5763 6132 -34 1233 217 108 25 chr4 12303672 12304032 -190024315 - MLT1B LTR MaLR 0 390 1 1251 235 93 8 chr4 12304033 12304408 -190023939 - MLT1B-int LTR MaLR -1 1370 964 1296 216 73 6 chr4 12304603 12304960 -190023387 - L1MA7 LINE L1 -8 6283 5903 993 201 86 0 chr4 12304967 12305235 -190023112 + L1M2 LINE L1 5087 5377 -769 295 206 0 0 chr4 12305279 12305342 -190023005 + L1MA8 LINE L1 6207 6269 -22 1279 152 4 16 chr4 12305445 12305688 -190022659 + L1M2 LINE L1 5384 5623 -668 279 0 0 0 chr4 12305710 12305741 -190022606 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1801 239 16 13 chr4 12305794 12306172 -190022175 - MLT1B-int LTR MaLR -485 886 510 1912 178 78 18 chr4 12306172 12306572 -190021775 + MSTB LTR MaLR 1 424 -2 1801 239 16 13 chr4 12306572 12306873 -190021474 - MLT1B-int LTR MaLR -861 510 1 353 202 42 76 chr4 12306873 12306992 -190021355 - MLT2B1 LTR ERVL 0 520 330 180 336 58 0 chr4 12307034 12307138 -190021209 + MIR SINE MIR 147 256 -6 242 182 0 0 chr4 12308717 12308761 -190019586 - MLT2B1 LTR ERVL 0 520 477 931 32 16 0 chr4 12308762 12308885 -190019462 + (TAGA)n Simple_repeat Simple_repeat 2 126 0 1515 216 20 0 chr4 12308885 12309228 -190019119 - MER47A DNA MER2_type -6 360 11 180 152 0 0 chr4 12309392 12309425 -190018922 + CT-rich Low_complexity Low_complexity 4 36 0 1282 65 0 0 chr4 12309477 12309646 -190018701 - L1PA4 LINE L1 0 6155 5987 1675 33 0 0 chr4 12309646 12309856 -190018491 + L1PA4 LINE L1 5755 5964 -191 23 0 0 0 chr4 12309893 12309916 -190018431 + AT_rich Low_complexity Low_complexity 1 23 0 2058 261 50 30 chr4 12310047 12310170 -190018177 - L1ME1 LINE L1 -4 6162 6043 309 51 0 0 chr4 12310170 12310209 -190018138 + (CA)n Simple_repeat Simple_repeat 1 39 0 2058 261 50 30 chr4 12310209 12310941 -190017406 - L1ME1 LINE L1 -123 6043 5290 962 285 87 30 chr4 12311069 12311543 -190016804 + MLT1J LTR MaLR 3 503 -8 1644 121 13 86 chr4 12311574 12311887 -190016460 + AluJo SINE Alu 23 312 0 430 271 47 16 chr4 12313592 12313721 -190014626 + LTR16C LTR ERVL 189 321 -170 1925 186 37 32 chr4 12313727 12314277 -190014070 - MLT2A2 LTR ERVL 0 554 1 278 285 101 13 chr4 12315735 12315893 -190012454 - L3 LINE CR1 -309 1268 1097 2312 242 30 20 chr4 12316105 12316709 -190011638 + MLT1E3 LTR MaLR 7 616 -8 408 294 168 9 chr4 12316853 12317067 -190011280 + MIR SINE MIR 1 248 -14 3759 67 6 2 chr4 12317393 12317887 -190010460 - L1PA7 LINE L1 0 6154 5659 2427 60 10 0 chr4 12317887 12318267 -190010080 + L1P3 LINE L1 5199 5581 -573 1134 325 12 12 chr4 12319451 12319875 -190008472 - LTR16A LTR ERVL 0 450 27 594 261 38 52 chr4 12320290 12320501 -190007846 - MIR SINE MIR -2 260 53 310 289 35 28 chr4 12320559 12320701 -190007646 + MLT1H LTR MaLR 12 154 -395 2424 77 0 3 chr4 12320741 12321052 -190007295 - AluY SINE Alu 0 311 2 25 0 0 0 chr4 12321889 12321914 -190006433 + AT_rich Low_complexity Low_complexity 1 25 0 28 0 0 0 chr4 12322147 12322175 -190006172 + AT_rich Low_complexity Low_complexity 1 28 0 2220 122 6 14 chr4 12322384 12322728 -190005619 - MER1A DNA MER1_type 0 529 189 3512 75 135 170 chr4 12322731 12323692 -190004655 - pTR5 LTR ERV1 0 2438 6 769 185 43 37 chr4 12323722 12323884 -190004463 - MER1A DNA MER1_type -331 196 34 1017 236 9 0 chr4 12324134 12324354 -190003993 - MER58A DNA MER1_type 0 224 3 2147 139 0 0 chr4 12324388 12324697 -190003650 + AluSx SINE Alu 1 309 -3 1625 216 0 0 chr4 12325353 12325635 -190002712 - AluJo SINE Alu -30 282 1 1754 229 79 8 chr4 12325774 12326242 -190002105 - MLT1D LTR MaLR -2 503 3 310 352 20 108 chr4 12326264 12326662 -190001685 + L2 LINE L2 2870 3232 -40 22 56 0 0 chr4 12326691 12326727 -190001620 + AT_rich Low_complexity Low_complexity 1 36 0 278 212 29 123 chr4 12327136 12327306 -190001041 - MLT1L LTR MaLR -221 394 241 446 179 152 13 chr4 12327330 12327481 -190000866 + MER53 DNA DNA 11 182 -7 286 309 121 12 chr4 12327924 12328089 -190000258 + MIR SINE MIR 10 192 -70 446 75 15 0 chr4 12328226 12328293 -190000054 + (TG)n Simple_repeat Simple_repeat 1 68 0 1331 208 53 129 chr4 12328295 12328823 -189999524 - MLT2B3 LTR ERVL -46 508 21 1299 297 81 72 chr4 12328968 12329907 -189998440 + L2 LINE L2 2367 3304 -9 188 371 79 0 chr4 12329967 12330056 -189998291 - MIR SINE MIR -2 260 165 636 328 8 45 chr4 12330110 12330378 -189997969 + MIR SINE MIR 5 262 0 419 273 121 0 chr4 12330384 12330516 -189997831 - MIR SINE MIR -106 156 9 592 345 86 4 chr4 12331157 12331412 -189996935 + L2 LINE L2 2576 2851 -463 391 241 117 29 chr4 12331461 12331598 -189996749 - MIR SINE MIR -105 157 9 243 384 36 14 chr4 12331687 12331825 -189996522 + L2 LINE L2 2911 3051 -262 204 333 23 23 chr4 12332151 12332238 -189996109 - MIR SINE MIR -16 246 160 1173 214 77 14 chr4 12332238 12332523 -189995824 + AluJb SINE Alu 6 308 -4 271 314 76 0 chr4 12332542 12332647 -189995700 - MIR SINE MIR -64 144 32 191 178 0 110 chr4 12332876 12332949 -189995398 - L2 LINE L2 -560 2754 2690 23 0 0 0 chr4 12333205 12333228 -189995119 + AT_rich Low_complexity Low_complexity 1 23 0 269 356 19 0 chr4 12333448 12333552 -189994795 + MIR SINE MIR 20 125 -137 194 263 53 0 chr4 12333588 12333645 -189994702 + MIR SINE MIR 203 262 0 216 0 0 0 chr4 12333747 12333771 -189994576 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 413 284 52 22 chr4 12334062 12334196 -189994151 + MIR SINE MIR 16 153 -109 376 281 42 42 chr4 12335140 12335332 -189993015 + L2 LINE L2 3070 3261 -52 229 261 76 51 chr4 12335876 12336008 -189992339 + LTR33A LTR ERVL 358 496 -27 180 0 0 0 chr4 12336008 12336028 -189992319 + (TTTG)n Simple_repeat Simple_repeat 3 22 0 229 261 76 51 chr4 12336028 12336052 -189992295 + LTR33A LTR ERVL 496 518 -5 222 298 134 68 chr4 12336307 12336599 -189991748 - L2 LINE L2 -459 2855 2545 30 0 0 0 chr4 12337145 12337175 -189991172 + AT_rich Low_complexity Low_complexity 1 30 0 543 305 75 17 chr4 12337300 12337539 -189990808 - MIR SINE MIR 0 262 10 262 309 0 21 chr4 12337618 12337715 -189990632 + MIR SINE MIR 74 168 -94 373 242 47 62 chr4 12338941 12339069 -189989278 - L2 LINE L2 0 3313 3188 774 323 124 68 chr4 12339177 12339944 -189988403 - L2 LINE L2 -356 2958 2149 1525 233 118 29 chr4 12339970 12340404 -189987943 + MLT2B1 LTR ERVL 3 484 -36 204 40 0 0 chr4 12340404 12340429 -189987918 + (TA)n Simple_repeat Simple_repeat 1 25 0 1525 233 118 29 chr4 12340429 12340470 -189987877 + MLT2B1 LTR ERVL 484 520 0 285 315 120 0 chr4 12340476 12340568 -189987779 - MIR SINE MIR -141 121 19 203 224 134 15 chr4 12340908 12340975 -189987372 + L3 LINE CR1 1243 1317 -260 295 357 49 38 chr4 12341721 12341906 -189986441 + MIR SINE MIR 20 206 -56 667 206 44 0 chr4 12342006 12342142 -189986205 - MLT1B LTR MaLR -10 380 239 300 174 14 14 chr4 12342242 12342311 -189986036 - MLT1B LTR MaLR -321 69 1 254 331 0 8 chr4 12342531 12342661 -189985686 + (TG)n Simple_repeat Simple_repeat 2 130 0 1683 162 39 72 chr4 12342893 12343281 -189985066 - THE1C LTR MaLR 0 375 1 6431 164 55 7 chr4 12343281 12344788 -189983559 - MLT1B-int LTR MaLR 0 1580 3 1865 166 27 24 chr4 12344790 12345164 -189983183 - THE1C LTR MaLR 0 375 1 359 357 39 26 chr4 12345176 12345330 -189983017 + MER91A DNA MER1_type 1 156 -40 199 283 0 0 chr4 12346554 12346600 -189981747 - MIR SINE MIR -124 138 93 27 0 0 0 chr4 12347495 12347522 -189980825 + AT_rich Low_complexity Low_complexity 1 27 0 210 71 0 0 chr4 12348166 12348194 -189980153 + (T)n Simple_repeat Simple_repeat 1 28 0 1159 252 22 31 chr4 12348339 12348660 -189979687 + MLT1C LTR MaLR 1 318 -149 1710 226 32 25 chr4 12348660 12349134 -189979213 + L1MA9 LINE L1 5799 6275 -37 214 151 38 38 chr4 12350374 12350427 -189977920 + T-rich Low_complexity Low_complexity 3 55 0 21 0 0 0 chr4 12350467 12350488 -189977859 + AT_rich Low_complexity Low_complexity 1 21 0 3696 207 43 34 chr4 12350538 12352023 -189976324 + L1MA10 LINE L1 4819 6321 -13 270 179 0 0 chr4 12352032 12352088 -189976259 + GA-rich Low_complexity Low_complexity 3 58 0 218 176 20 0 chr4 12352717 12352768 -189975579 + (TA)n Simple_repeat Simple_repeat 2 53 0 855 271 56 68 chr4 12353417 12353812 -189974535 + L2 LINE L2 2916 3305 -8 198 282 89 32 chr4 12353814 12353938 -189974409 - MIR SINE MIR -58 204 74 196 391 109 8 chr4 12354010 12354258 -189974089 + L3 LINE CR1 1277 1549 -28 229 304 70 51 chr4 12354506 12354646 -189973701 - MIR SINE MIR -65 143 5 304 285 98 8 chr4 12355256 12355379 -189972968 - MIR SINE MIR -53 209 76 990 268 51 49 chr4 12358573 12359061 -189969286 - MLT1E3 LTR MaLR 0 624 136 320 334 46 59 chr4 12359062 12359385 -189968962 - L1M4 LINE L1 -1932 4214 3896 321 247 165 99 chr4 12359701 12359825 -189968522 - L1M4 LINE L1 -2688 3458 3344 479 0 0 0 chr4 12359825 12359882 -189968465 - L1PA3 LINE L1 -3 6152 6096 321 247 165 99 chr4 12359882 12359931 -189968416 - L1M4 LINE L1 -2802 3344 3300 2256 80 0 7 chr4 12359931 12360217 -189968130 - AluY SINE Alu -9 302 19 321 247 165 99 chr4 12360217 12360394 -189967953 - L1M4 LINE L1 -2846 3300 3084 312 188 0 0 chr4 12360471 12360535 -189967812 + CT-rich Low_complexity Low_complexity 3 66 0 341 317 16 8 chr4 12360594 12360717 -189967630 - L1M4 LINE L1 -3161 2985 2862 225 309 0 0 chr4 12360721 12360802 -189967545 - L1M4 LINE L1 -3328 2818 2738 215 260 13 26 chr4 12360867 12360896 -189967451 + CT-rich Low_complexity Low_complexity 1 29 -47 2412 160 7 47 chr4 12360896 12361340 -189967007 - MSTB LTR MaLR 0 426 1 215 260 13 26 chr4 12361340 12361387 -189966960 + CT-rich Low_complexity Low_complexity 29 76 0 1906 340 52 11 chr4 12361545 12362293 -189966054 + L1MA7 LINE L1 1430 2208 -5288 2064 261 79 26 chr4 12362311 12362650 -189965697 + L1MA7 LINE L1 2260 2579 -4986 1976 175 0 0 chr4 12362650 12362958 -189965389 + AluSx SINE Alu 1 308 -4 2064 261 79 26 chr4 12362958 12364333 -189964014 + L1MA7 LINE L1 2579 3732 -3833 * 3880 196 41 13 chr4 12364318 12365663 -189962684 + L1MA7 LINE L1 6199 7699 -11 27 96 0 0 chr4 12365740 12365823 -189962524 + AT_rich Low_complexity Low_complexity 1 83 0 394 382 36 5 chr4 12365874 12366094 -189962253 + MIR SINE MIR 15 241 -21 262 362 5 55 chr4 12366187 12366386 -189961961 - MIR SINE MIR -71 191 3 258 32 0 0 chr4 12366780 12366811 -189961536 + (CA)n Simple_repeat Simple_repeat 2 32 0 728 283 15 20 chr4 12367198 12367396 -189960951 + MER58A DNA MER1_type 9 205 -19 197 333 0 0 chr4 12367415 12367469 -189960878 - MIR SINE MIR -74 134 81 209 271 97 56 chr4 12368210 12368354 -189959993 + MIR SINE MIR 57 206 -56 324 70 0 0 chr4 12368408 12368451 -189959896 + (ATG)n Simple_repeat Simple_repeat 1 43 0 273 269 26 0 chr4 12368489 12368567 -189959780 + MER94 DNA DNA 39 118 -16 1582 35 0 20 chr4 12368867 12369067 -189959280 - AluY SINE Alu -12 299 104 312 244 0 0 chr4 12369389 12369479 -189958868 + GA-rich Low_complexity Low_complexity 5 94 0 180 0 0 0 chr4 12370256 12370276 -189958071 + (T)n Simple_repeat Simple_repeat 1 20 0 186 288 195 34 chr4 12370577 12370695 -189957652 + MIR SINE MIR 20 156 -106 186 103 0 0 chr4 12371838 12371867 -189956480 + (TA)n Simple_repeat Simple_repeat 1 29 0 372 243 5 146 chr4 12373036 12373221 -189955126 + LTR67 LTR ERVL 353 511 -46 1536 212 8 69 chr4 12373234 12373611 -189954736 + MLT1A1 LTR MaLR 1 354 -11 330 247 104 32 chr4 12373766 12373920 -189954427 - L2 LINE L2 -6 3307 3143 743 275 51 18 chr4 12374154 12374488 -189953859 - L1M4 LINE L1 -2216 3930 3586 836 104 0 0 chr4 12374741 12374866 -189953481 + AluY SINE Alu 187 311 0 1714 194 41 19 chr4 12375214 12375581 -189952766 - THE1C LTR MaLR 0 375 1 9093 145 12 35 chr4 12375581 12377194 -189951153 - THE1C-int LTR MaLR 0 1580 4 1701 182 40 37 chr4 12377197 12377571 -189950776 - THE1C LTR MaLR 0 375 1 322 327 67 0 chr4 12377724 12377828 -189950519 - MER81 DNA DNA -3 111 1 1312 158 36 9 chr4 12377850 12378072 -189950275 - MER30 DNA MER1_type 0 230 3 183 80 0 0 chr4 12378543 12378568 -189949779 + (TTTTTG)n Simple_repeat Simple_repeat 2 26 0 227 287 57 100 chr4 12378584 12378822 -189949525 + MIR SINE MIR 9 236 -26 21 0 0 0 chr4 12379139 12379160 -189949187 + AT_rich Low_complexity Low_complexity 1 21 0 1487 204 22 44 chr4 12379504 12379866 -189948481 + MLT1A1 LTR MaLR 12 365 0 301 318 13 54 chr4 12379960 12380113 -189948234 + MIR SINE MIR 47 146 -62 391 234 39 55 chr4 12380273 12380401 -189947946 + MIR SINE MIR 31 156 -106 252 342 0 8 chr4 12380433 12380550 -189947797 + MIR SINE MIR 146 261 -1 23 0 0 0 chr4 12380607 12380630 -189947717 + AT_rich Low_complexity Low_complexity 1 23 0 210 250 0 0 chr4 12380732 12380836 -189947511 + (CA)n Simple_repeat Simple_repeat 1 104 0 206 305 17 17 chr4 12381019 12381078 -189947269 + MIR SINE MIR 95 153 -55 * 214 214 0 0 chr4 12381073 12381115 -189947232 + L2 LINE L2 3267 3308 -5 271 320 72 24 chr4 12381377 12381502 -189946845 - L2 LINE L2 0 3272 3142 225 184 0 0 chr4 12381766 12381804 -189946543 - MLT1I LTR MaLR -274 135 98 255 302 0 0 chr4 12382118 12382181 -189946166 + L2 LINE L2 3210 3272 0 280 292 138 23 chr4 12382302 12382432 -189945915 + L2 LINE L2 3118 3262 -10 481 342 53 25 chr4 12382645 12383224 -189945123 + L1ME2 LINE L1 5263 5867 -297 215 305 150 49 chr4 12384001 12384230 -189944117 + MIR3 SINE MIR 5 262 0 1757 162 0 4 chr4 12385700 12385999 -189942348 + AluSx SINE Alu 14 311 0 1000 251 69 69 chr4 12386093 12386483 -189941864 + MLT1B LTR MaLR 1 390 0 2313 240 47 39 chr4 12386484 12387250 -189941097 - L1ME2 LINE L1 -22 6142 5371 906 290 116 28 chr4 12387266 12388110 -189940237 - L1ME2 LINE L1 -845 5301 4384 2338 272 89 35 chr4 12388233 12389536 -189938811 - L1ME2 LINE L1 -2098 4048 2675 33 0 0 0 chr4 12389914 12389947 -189938400 + AT_rich Low_complexity Low_complexity 1 33 0 323 325 77 36 chr4 12390209 12390403 -189937944 - MIR SINE MIR 0 262 61 188 194 28 0 chr4 12390400 12390436 -189937911 + MER5A DNA MER1_type 152 188 -1 * 1175 258 185 6 chr4 12391264 12391751 -189936596 - MLT1F1 LTR MaLR 0 567 1 827 264 95 20 chr4 12392004 12392352 -189935995 - L1ME4a LINE L1 -15 6106 5733 601 200 32 0 chr4 12392840 12392965 -189935382 + MER94 DNA DNA 1 129 -5 289 185 41 14 chr4 12393213 12393359 -189934988 + (TA)n Simple_repeat Simple_repeat 2 151 0 648 355 47 17 chr4 12393769 12394068 -189934279 + L1M2 LINE L1 395 702 -6147 3347 238 52 46 chr4 12394296 12395851 -189932496 + L1M2 LINE L1 1345 2907 -3941 2866 10 0 0 chr4 12395851 12396161 -189932186 - AluY SINE Alu -1 310 1 3347 238 52 46 chr4 12396161 12396385 -189931962 + L1M2 LINE L1 2907 3128 -3720 231 71 48 0 chr4 12396437 12396479 -189931868 - LTR66 LTR ERVL -169 441 398 237 65 0 0 chr4 12396479 12396510 -189931837 + (TA)n Simple_repeat Simple_repeat 2 32 0 3055 202 17 17 chr4 12396544 12397633 -189930714 + L1M2 LINE L1 5287 6370 -632 2432 194 11 11 chr4 12397643 12398091 -189930256 + L1MA3 LINE L1 16 463 -7102 608 140 11 0 chr4 12398093 12398186 -189930161 - AluSg SINE Alu -216 94 1 806 154 12 12 chr4 12398186 12398348 -189929999 + L1MA3 LINE L1 5631 5792 -1773 * 895 126 12 18 chr4 12398343 12398510 -189929837 + L1MA3 LINE L1 7175 7340 -384 22 0 0 0 chr4 12398895 12398917 -189929430 + AT_rich Low_complexity Low_complexity 1 22 0 747 303 19 0 chr4 12399421 12399632 -189928715 + MER58A DNA MER1_type 10 224 0 278 335 120 11 chr4 12399632 12399823 -189928524 - MIR SINE MIR -46 216 5 597 163 59 20 chr4 12399838 12399991 -189928356 - L1MB8 LINE L1 -6 7193 7035 859 225 58 8 chr4 12400001 12400290 -189928057 - L1MB8 LINE L1 -660 6539 6239 7711 263 54 10 chr4 12400378 12401083 -189927264 - L1MB8 LINE L1 -1101 6066 5394 2309 116 38 30 chr4 12401083 12401455 -189926892 - THE1C LTR MaLR 0 375 1 7711 263 54 10 chr4 12401455 12401750 -189926597 - L1MB8 LINE L1 -1773 5394 5114 360 0 0 0 chr4 12401750 12401790 -189926557 + (TA)n Simple_repeat Simple_repeat 1 40 0 7711 263 54 10 chr4 12401790 12403708 -189924639 - L1MB8 LINE L1 -2053 5114 3054 5845 257 42 43 chr4 12404067 12406465 -189921882 - L1M4c LINE L1 -4436 2702 192 1428 189 3 6 chr4 12406565 12406877 -189921470 - L1P LINE L1 -4612 1534 1224 4041 307 96 14 chr4 12406885 12408358 -189919989 - L1MB8 LINE L1 -5517 1651 48 297 0 0 0 chr4 12408358 12408391 -189919956 + (TG)n Simple_repeat Simple_repeat 2 34 0 4041 307 96 14 chr4 12408391 12408431 -189919916 - L1MB8 LINE L1 -7120 48 13 2159 124 0 6 chr4 12410454 12410768 -189917579 - AluSq SINE Alu -1 312 1 367 309 76 57 chr4 12411743 12412422 -189915925 + L1MEc LINE L1 702 1403 -4993 2018 155 25 38 chr4 12412422 12412790 -189915557 + THE1B LTR MaLR 2 364 0 367 309 76 57 chr4 12412790 12412975 -189915372 + L1MEc LINE L1 1403 1583 -4813 1641 255 49 7 chr4 12412980 12413412 -189914935 - MLT1D LTR MaLR -2 503 54 304 350 45 0 chr4 12413413 12413570 -189914777 - HERVL LTR ERVL -3238 2416 2253 1488 246 23 11 chr4 12413589 12413939 -189914408 - MLT1A1 LTR MaLR -9 356 3 1728 293 29 55 chr4 12413940 12414528 -189913819 - HERVL LTR ERVL -2753 2260 1726 2253 116 0 0 chr4 12414528 12414830 -189913517 - AluSc SINE Alu -7 302 1 1728 293 29 55 chr4 12414830 12415119 -189913228 - HERVL LTR ERVL -3287 1726 1431 580 328 47 19 chr4 12415625 12415881 -189912466 - LTR16A LTR ERVL -78 372 110 698 244 48 26 chr4 12415975 12416246 -189912101 + L1ME2 LINE L1 5333 5609 -555 409 238 20 10 chr4 12416250 12416351 -189911996 - MER8 DNA MER2_type 0 239 138 1475 264 14 68 chr4 12416397 12416970 -189911377 + L1ME2 LINE L1 5615 6156 -8 576 292 117 42 chr4 12417526 12417766 -189910581 + MIR SINE MIR 5 262 0 283 255 28 66 chr4 12418253 12418359 -189909988 + MIR3 SINE MIR 69 170 -38 291 320 112 15 chr4 12418606 12418803 -189909544 + MIR SINE MIR 13 228 -34 730 290 108 5 chr4 12419292 12419506 -189908841 - MIR SINE MIR -10 252 17 403 362 34 37 chr4 12419822 12420173 -189908174 + L1MD2 LINE L1 4487 4836 -1310 1252 210 6 72 chr4 12420324 12420657 -189907690 - AluJo SINE Alu -1 311 1 2265 119 24 29 chr4 12420927 12421304 -189907043 - THE1C LTR MaLR 0 375 1 227 273 51 100 chr4 12421356 12421667 -189906680 + L1MD2 LINE L1 5314 5609 -2199 9059 36 2 1 chr4 12421691 12422761 -189905586 + MER11C LTR ERVK 1 1071 0 279 313 52 37 chr4 12422930 12423064 -189905283 - MIR SINE MIR -104 158 23 473 263 165 64 chr4 12423123 12423420 -189904927 - MLT1H LTR MaLR -2 547 221 667 225 78 0 chr4 12423686 12423828 -189904519 + MER58B DNA MER1_type 185 337 -4 319 294 75 41 chr4 12424747 12424893 -189903454 + MIR SINE MIR 41 191 -71 219 69 0 0 chr4 12425187 12425216 -189903131 + (GGAA)n Simple_repeat Simple_repeat 1 29 0 283 309 41 10 chr4 12426122 12426219 -189902128 + MER94 DNA DNA 5 104 -30 425 251 120 24 chr4 12426394 12426561 -189901786 - LTR33A LTR ERVL -15 508 326 248 342 40 27 chr4 12426697 12426846 -189901501 - LTR33 LTR ERVL -322 199 49 227 353 90 8 chr4 12428498 12428631 -189899716 + MIR3 SINE MIR 55 198 -10 237 65 0 0 chr4 12428654 12428682 -189899665 + (TG)n Simple_repeat Simple_repeat 1 59 0 237 65 0 0 chr4 12428682 12428713 -189899634 + (TG)n Simple_repeat Simple_repeat 2 32 0 890 212 35 69 chr4 12428724 12429012 -189899335 + L1MD2 LINE L1 6072 6349 -10 1108 246 78 89 chr4 12429016 12429867 -189898480 + L1M4 LINE L1 4255 5095 -1051 213 65 0 0 chr4 12429887 12429918 -189898429 + (TATG)n Simple_repeat Simple_repeat 2 32 0 1902 202 28 4 chr4 12430089 12430550 -189897797 + L1 LINE L1 4021 4492 -1654 862 355 27 23 chr4 12430565 12431005 -189897342 + L1M3a LINE L1 11 452 -5503 233 382 42 0 chr4 12431134 12431278 -189897069 + L1M3a LINE L1 305 454 -5501 233 325 40 16 chr4 12431737 12431863 -189896484 + L1M3a LINE L1 547 675 -5280 278 368 28 0 chr4 12431880 12432024 -189896323 + L1M3a LINE L1 552 699 -5256 1531 290 70 34 chr4 12432167 12433710 -189894637 + L1MA7 LINE L1 245 1591 -4443 1097 241 122 6 chr4 12433710 12434062 -189894285 + MSTD LTR MaLR 4 396 0 1531 290 70 34 chr4 12434062 12434885 -189893462 + L1MA7 LINE L1 1591 2384 -3650 890 258 0 26 chr4 12434900 12435133 -189893214 - MER46A DNA MER2_type -9 227 1 1963 265 36 8 chr4 12435134 12435746 -189892601 + L1MA7 LINE L1 2384 3012 -3022 * 9220 136 38 10 chr4 12435740 12437181 -189891166 + THE1C-int LTR MaLR 99 1579 -1 1781 176 24 21 chr4 12437182 12437556 -189890791 + THE1C LTR MaLR 1 375 0 738 250 60 49 chr4 12437556 12437745 -189890602 + L1MA7 LINE L1 3056 3242 -2792 2867 136 64 50 chr4 12437745 12438190 -189890157 + LTR24C LTR ERV1 1 459 -176 2226 100 17 0 chr4 12438190 12438489 -189889858 + AluSp SINE Alu 1 304 -9 2867 136 64 50 chr4 12438489 12438668 -189889679 + LTR24C LTR ERV1 459 634 -1 738 250 60 49 chr4 12438668 12438930 -189889417 + L1MA7 LINE L1 3242 3549 -2485 3594 105 57 37 chr4 12438932 12439893 -189888454 - MER11A LTR ERVK -4 1067 1 5416 220 37 15 chr4 12439893 12441402 -189886945 + L1MA7 LINE L1 3541 5174 -860 1262 200 34 0 chr4 12441404 12441639 -189886708 - MSTB1 LTR MaLR 0 432 190 1329 165 39 16 chr4 12441656 12441911 -189886436 - MSTB1 LTR MaLR -171 261 1 5329 223 65 87 chr4 12441911 12443258 -189885089 - MSTB1-int LTR MaLR 0 1651 346 1781 73 13 4 chr4 12443258 12443492 -189884855 - AluY SINE Alu -13 298 63 5329 223 65 87 chr4 12443492 12443827 -189884520 - MSTB1-int LTR MaLR -1305 346 5 2111 157 89 10 chr4 12443836 12444231 -189884116 - MSTB1 LTR MaLR -6 426 1 4314 208 24 14 chr4 12444232 12445229 -189883118 + L1MA7 LINE L1 5173 6179 0 23 0 0 0 chr4 12445220 12445243 -189883104 + AT_rich Low_complexity Low_complexity 1 23 0 * 3341 214 31 41 chr4 12445245 12445523 -189882824 + L1MB2 LINE L1 4477 4756 -1415 1417 257 16 13 chr4 12445523 12445896 -189882451 + MLT1A2 LTR MaLR 1 374 0 3341 214 31 41 chr4 12445896 12446787 -189881560 + L1MB2 LINE L1 4756 5654 -517 2447 62 10 3 chr4 12446787 12447091 -189881256 + AluY SINE Alu 1 306 -5 3341 214 31 41 chr4 12447091 12447606 -189880741 + L1MB2 LINE L1 5654 6119 -52 2075 135 0 0 chr4 12447606 12447902 -189880445 + AluSq SINE Alu 1 296 -17 3341 214 31 41 chr4 12447902 12447955 -189880392 + L1MB2 LINE L1 6119 6171 0 523 231 55 41 chr4 12447948 12448232 -189880115 + L1ME LINE L1 5177 5466 -698 * 205 329 208 7 chr4 12448756 12448905 -189879442 - MIR SINE MIR -32 230 52 2926 201 131 1 chr4 12449491 12450238 -189878109 - L1MB7 LINE L1 -19 6165 5322 1523 210 31 42 chr4 12450245 12450630 -189877717 - L1MB5 LINE L1 -13 6161 5781 453 286 0 6 chr4 12450730 12450905 -189877442 - L1MB7 LINE L1 -873 5273 5100 1649 264 93 26 chr4 12450920 12451686 -189876661 - L1MB7 LINE L1 -1152 4994 4178 244 198 12 25 chr4 12451722 12451803 -189876544 + CT-rich Low_complexity Low_complexity 1 80 0 203 325 25 38 chr4 12452468 12452548 -189875799 - MIR3 SINE MIR -6 202 124 21 0 0 0 chr4 12453377 12453398 -189874949 + AT_rich Low_complexity Low_complexity 1 21 0 366 304 224 34 chr4 12453699 12454282 -189874065 + L2 LINE L2 2587 3283 -30 2050 126 13 13 chr4 12454300 12454618 -189873729 + THE1C LTR MaLR 58 375 0 1600 166 62 3 chr4 12454740 12455030 -189873317 - AluSx SINE Alu -5 307 1 221 214 29 0 chr4 12455200 12455270 -189873077 + (TA)n Simple_repeat Simple_repeat 1 72 0 389 93 0 0 chr4 12455381 12455435 -189872912 + MLT2D LTR ERVL 1 54 -360 28 29 0 0 chr4 12455435 12455470 -189872877 + AT_rich Low_complexity Low_complexity 1 35 0 229 212 0 0 chr4 12455485 12455551 -189872796 - L1MC4 LINE L1 -1340 6702 6637 873 173 97 0 chr4 12455654 12455839 -189872508 - MLT2D LTR ERVL -211 203 1 22 35 0 0 chr4 12456368 12456397 -189871950 + AT_rich Low_complexity Low_complexity 1 29 0 1258 222 21 31 chr4 12457248 12457631 -189870716 - Charlie4a DNA MER1_type -54 454 76 22 0 0 0 chr4 12457631 12457653 -189870694 + AT_rich Low_complexity Low_complexity 1 22 0 2903 278 54 48 chr4 12457769 12459868 -189868479 + L1M4c LINE L1 1 1799 -4411 303 323 70 21 chr4 12459896 12459990 -189868357 + L1M4c LINE L1 1831 1919 -4293 2159 127 0 0 chr4 12459990 12460297 -189868050 + AluSc SINE Alu 1 307 -2 303 323 70 21 chr4 12460297 12460388 -189867959 + L1M4c LINE L1 1919 2025 -4187 485 316 7 7 chr4 12460450 12460589 -189867758 + L2 LINE L2 3175 3313 0 272 358 37 47 chr4 12460598 12460897 -189867450 - L2 LINE L2 -710 2604 2309 303 192 0 0 chr4 12460937 12461015 -189867332 + GA-rich Low_complexity Low_complexity 1 78 0 284 375 69 0 chr4 12461238 12461398 -189866949 - L2 LINE L2 -1285 2029 1859 7293 43 0 2 chr4 12461671 12463048 -189865299 + L1PA4 LINE L1 4778 6153 -2 272 315 101 22 chr4 12463502 12463680 -189864667 + L2 LINE L2 3112 3303 -10 244 308 20 25 chr4 12463967 12464165 -189864182 + L1M4c LINE L1 3348 3544 -2666 492 324 68 56 chr4 12465342 12465990 -189862357 + L1M4 LINE L1 3295 3950 -2196 189 333 75 21 chr4 12466128 12466221 -189862126 + MIR SINE MIR 18 115 -147 2539 65 3 0 chr4 12466717 12467026 -189861321 - AluY SINE Alu -1 310 1 330 316 11 0 chr4 12467053 12467148 -189861199 - MIR SINE MIR -73 135 40 1798 212 64 25 chr4 12467555 12467994 -189860353 + MLT1C LTR MaLR 12 467 0 2080 113 0 0 chr4 12468535 12468809 -189859538 - AluSq SINE Alu -17 296 23 205 327 18 62 chr4 12468848 12468961 -189859386 - L2 LINE L2 -502 2812 2705 669 131 11 148 chr4 12469096 12469279 -189859068 - AluJb SINE Alu -1 311 154 2129 56 7 0 chr4 12469382 12469652 -189858695 - AluY SINE Alu -39 272 1 21 0 0 0 chr4 12470173 12470194 -189858153 + AT_rich Low_complexity Low_complexity 1 21 0 222 328 15 60 chr4 12470731 12470865 -189857482 + MER5A DNA MER1_type 8 135 -54 2028 64 64 0 chr4 12471318 12471624 -189856723 - AluY SINE Alu 0 323 1 184 396 10 0 chr4 12471642 12471743 -189856604 - MIR SINE MIR -128 134 33 207 293 102 48 chr4 12472161 12472328 -189856019 - MIR SINE MIR -1 261 86 242 347 56 7 chr4 12473016 12473160 -189855187 - MIR SINE MIR -111 151 1 273 297 78 39 chr4 12474288 12474416 -189853931 + L2 LINE L2 3165 3297 -16 25 31 0 0 chr4 12475465 12475497 -189852850 + AT_rich Low_complexity Low_complexity 1 32 0 285 337 60 12 chr4 12476074 12476240 -189852107 + MIR SINE MIR 47 220 -42 2928 101 21 0 chr4 12476567 12477001 -189851346 - L1PA13 LINE L1 -4 6159 5717 786 199 4 132 chr4 12477876 12478127 -189850220 + MER20 DNA MER1_type 1 219 0 221 290 16 0 chr4 12478429 12478491 -189849856 - MIR SINE MIR -42 220 158 1020 268 57 66 chr4 12478491 12479040 -189849307 - MLT1H1 LTR MaLR 0 555 12 686 184 7 34 chr4 12479895 12480042 -189848305 - FLAM_C SINE Alu 0 143 1 189 0 0 0 chr4 12480309 12480330 -189848017 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 2225 128 22 8 chr4 12480422 12480788 -189847559 + THE1C LTR MaLR 1 371 -4 9308 138 49 19 chr4 12480792 12482326 -189846021 + THE1C-int LTR MaLR 1 1580 0 1880 169 16 39 chr4 12482326 12482710 -189845637 + THE1C LTR MaLR 1 375 0 958 49 81 0 chr4 12484012 12484135 -189844212 + MER85 DNA T2_type 1 133 -6 230 191 16 79 chr4 12484101 12484164 -189844183 - MER85 DNA T2_type -6 133 75 * 295 150 3 60 chr4 12484507 12484574 -189843773 + L1M1 LINE L1 5525 5588 -714 1749 183 3 3 chr4 12485848 12486133 -189842214 - AluJb SINE Alu -27 285 1 34 65 0 0 chr4 12487066 12487128 -189841219 + AT_rich Low_complexity Low_complexity 1 62 0 523 343 121 41 chr4 12487240 12487555 -189840792 + LTR16C LTR ERVL 128 467 -24 488 233 72 76 chr4 12487720 12487982 -189840365 - L1ME3A LINE L1 -230 5940 5680 287 206 29 15 chr4 12488073 12488141 -189840206 - MLT1I LTR MaLR -271 138 70 2165 105 10 0 chr4 12488370 12488665 -189839682 - AluSg SINE Alu -12 298 1 21 0 0 0 chr4 12488705 12488726 -189839621 + AT_rich Low_complexity Low_complexity 1 21 0 261 0 0 0 chr4 12488765 12488794 -189839553 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 239 330 79 32 chr4 12489170 12489449 -189838898 + L1MEd LINE L1 569 860 -5259 202 314 101 44 chr4 12490357 12490516 -189837831 - MIR SINE MIR -1 261 94 426 156 0 0 chr4 12490547 12490624 -189837723 - L1PA16 LINE L1 -4 6162 6086 22 0 0 0 chr4 12490795 12490817 -189837530 + AT_rich Low_complexity Low_complexity 1 22 0 206 161 0 36 chr4 12491245 12491301 -189837046 + (CATA)n Simple_repeat Simple_repeat 2 55 0 2274 172 54 5 chr4 12491663 12492069 -189836278 + MSTB LTR MaLR 1 426 0 8178 178 60 5 chr4 12492069 12493599 -189834748 + MSTB-int LTR MaLR 1 1614 -37 542 189 0 0 chr4 12493616 12493711 -189834636 + MSTB LTR MaLR 1 95 -331 2871 122 24 2 chr4 12493715 12494166 -189834181 + L1PA8 LINE L1 5712 6172 0 275 325 20 60 chr4 12494352 12494503 -189833844 + MIR SINE MIR 114 258 -4 180 0 0 0 chr4 12494860 12494880 -189833467 + (T)n Simple_repeat Simple_repeat 1 20 0 259 344 0 0 chr4 12495265 12495355 -189832992 + MIR SINE MIR 118 207 -55 1753 260 59 36 chr4 12495467 12496097 -189832250 - L1MC4 LINE L1 -140 7902 7259 1261 255 67 36 chr4 12496106 12496658 -189831689 - L1MC4 LINE L1 -809 6999 6452 1789 188 8 44 chr4 12497649 12498439 -189829908 - L1MB1 LINE L1 -532 5636 4880 329 169 17 0 chr4 12498437 12498496 -189829851 + L1MB1 LINE L1 5660 5719 -449 * 630 109 0 0 chr4 12498497 12498589 -189829758 - AluSc SINE Alu -217 92 1 1826 181 48 5 chr4 12498590 12498961 -189829386 + L1MB1 LINE L1 5781 6167 -1 190 372 0 35 chr4 12498983 12499069 -189829278 + MIR SINE MIR 19 101 -107 323 348 57 17 chr4 12499227 12499457 -189828890 + MIR SINE MIR 3 241 -21 243 374 65 23 chr4 12500428 12500642 -189827705 + L2 LINE L2 2384 2606 -708 584 240 35 35 chr4 12500885 12501085 -189827262 + MER3 DNA MER1_type 10 209 0 301 262 56 40 chr4 12501208 12501334 -189827013 + MLT1F1 LTR MaLR 440 567 0 211 338 60 92 chr4 12501581 12501862 -189826485 + L2 LINE L2 3000 3271 -1 216 337 178 0 chr4 12502090 12502191 -189826156 + MIR SINE MIR 20 138 -124 298 250 43 11 chr4 12502852 12502944 -189825403 + MIR SINE MIR 112 206 -56 1714 173 94 0 chr4 12503293 12503611 -189824736 + MER7A DNA MER2_type 1 346 0 7436 31 1 0 chr4 12504080 12504995 -189823352 + L1PA4 LINE L1 5254 6169 0 34 79 0 0 chr4 12505221 12505297 -189823050 + AT_rich Low_complexity Low_complexity 1 76 0 276 339 62 27 chr4 12506295 12506407 -189821940 + L2 LINE L2 3137 3252 -20 196 289 19 0 chr4 12506526 12506578 -189821769 + L2 LINE L2 3246 3298 -15 34 24 0 0 chr4 12506578 12506619 -189821728 + AT_rich Low_complexity Low_complexity 1 41 0 2051 62 106 0 chr4 12507149 12507424 -189820923 - AluY SINE Alu -7 304 1 245 288 0 12 chr4 12507599 12507679 -189820668 + (TA)n Simple_repeat Simple_repeat 2 80 0 231 36 0 0 chr4 12507679 12507707 -189820640 + (CA)n Simple_repeat Simple_repeat 2 29 0 1002 177 94 0 chr4 12508127 12508381 -189819966 - L1MA8 LINE L1 -1 6290 6013 291 331 73 8 chr4 12509046 12509170 -189819177 + MIR3 SINE MIR 45 176 -32 185 196 22 0 chr4 12509579 12509625 -189818722 + GA-rich Low_complexity Low_complexity 2 48 0 390 244 0 0 chr4 12510061 12510151 -189818196 + FLAM_A SINE Alu 44 133 0 304 412 10 20 chr4 12510224 12510428 -189817919 - L2 LINE L2 -260 3053 2852 760 178 8 0 chr4 12511242 12511371 -189816976 + MLT1D LTR MaLR 1 130 -375 455 298 18 9 chr4 12513377 12513491 -189814856 + L2 LINE L2 3182 3296 -17 233 320 48 40 chr4 12513600 12513725 -189814622 + MIR SINE MIR 16 141 -67 383 113 28 28 chr4 12513753 12513824 -189814523 + AluSc SINE Alu 224 294 -5 298 323 0 46 chr4 12513868 12513998 -189814349 + MIR SINE MIR 89 212 -50 253 387 54 0 chr4 12514190 12514301 -189814046 + L2 LINE L2 3152 3268 -4 25 18 0 73 chr4 12514339 12514394 -189813953 + AT_rich Low_complexity Low_complexity 1 51 0 1750 166 27 6 chr4 12515288 12515620 -189812727 - L1MA2 LINE L1 0 6304 5966 283 286 50 8 chr4 12516193 12516312 -189812035 + LTR67 LTR ERVL 428 551 -6 1104 158 11 16 chr4 12516460 12516650 -189811697 - AluJb SINE Alu -12 300 112 223 360 13 0 chr4 12517164 12517239 -189811108 - L2 LINE L2 -13 3259 3184 369 0 0 0 chr4 12517717 12517758 -189810589 + (TG)n Simple_repeat Simple_repeat 2 42 0 476 290 88 42 chr4 12517922 12518139 -189810208 - MIR SINE MIR -14 248 22 199 310 109 52 chr4 12521220 12521394 -189806953 - L3 LINE CR1 -40 1537 1354 21 0 0 0 chr4 12521502 12521523 -189806824 + AT_rich Low_complexity Low_complexity 1 21 0 300 111 0 0 chr4 12521523 12521568 -189806779 + (CA)n Simple_repeat Simple_repeat 2 46 0 2154 98 11 3 chr4 12521574 12521859 -189806488 - AluSq SINE Alu -26 287 1 1088 229 54 37 chr4 12524199 12524473 -189803874 - AluJo SINE Alu -8 304 23 2214 138 28 6 chr4 12524473 12524829 -189803518 - THE1B LTR MaLR 0 364 1 1088 229 54 37 chr4 12524829 12524851 -189803496 - AluJo SINE Alu -289 23 3 339 302 127 38 chr4 12524858 12525070 -189803277 - MIR SINE MIR -11 251 21 457 340 31 5 chr4 12525165 12525356 -189802991 + MIR SINE MIR 6 201 -61 919 128 47 14 chr4 12525482 12525630 -189802717 - FRAM SINE Alu -12 164 12 187 342 155 19 chr4 12525884 12526039 -189802308 + MIR SINE MIR 1 176 -86 181 336 115 0 chr4 12526035 12526139 -189802208 - MIR SINE MIR -105 157 42 * 1674 180 66 6 chr4 12526189 12526555 -189801792 - L1MB4 LINE L1 -6 6174 5787 207 0 0 0 chr4 12526926 12526949 -189801398 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1751 169 36 0 chr4 12526951 12527229 -189801118 - AluJb SINE Alu -23 289 2 228 330 20 20 chr4 12527252 12527352 -189800995 + MIR3 SINE MIR 92 191 -17 222 301 158 60 chr4 12527582 12527765 -189800582 - MIR SINE MIR -50 212 12 194 268 18 18 chr4 12527989 12528045 -189800302 - L2 LINE L2 -93 3220 3165 334 295 101 53 chr4 12529674 12529881 -189798466 - MIR SINE MIR 0 262 46 294 295 42 0 chr4 12530372 12530467 -189797880 - MER67C LTR ERV1 -367 343 245 297 331 58 16 chr4 12530509 12530630 -189797717 + MIR SINE MIR 91 216 -46 198 351 53 30 chr4 12531331 12531462 -189796885 + MER5A DNA MER1_type 55 188 -1 43615 42 3 1 chr4 12531561 12537705 -189790642 + L1PA3 LINE L1 2 6155 0 281 315 25 26 chr4 12538481 12538708 -189789639 - MER67A LTR ERV1 0 543 282 * 1138 275 81 16 chr4 12538689 12539178 -189789169 - MER67B LTR ERV1 -269 392 1 322 308 55 20 chr4 12539403 12539549 -189788798 - MIR SINE MIR -56 206 56 504 255 0 50 chr4 12540568 12540709 -189787638 - MER5A DNA MER1_type -55 134 1 369 279 228 0 chr4 12540738 12540874 -189787473 + MER5A DNA MER1_type 22 188 -1 306 295 35 4 chr4 12542743 12542865 -189785482 + MER5A DNA MER1_type 14 128 -50 5000 150 21 9 chr4 12543041 12543956 -189784391 + L1PA15 LINE L1 5235 6164 -1 230 386 70 0 chr4 12544002 12544160 -189784187 + MIR SINE MIR 30 198 -64 400 370 117 9 chr4 12544281 12544670 -189783677 + L2 LINE L2 2716 3149 -164 263 222 42 0 chr4 12544670 12544742 -189783605 - LTR33A LTR ERVL -2 521 447 406 266 65 65 chr4 12545054 12545193 -189783154 + L2 LINE L2 3175 3313 0 312 313 38 30 chr4 12545397 12545528 -189782819 + MIR3 SINE MIR 23 154 -54 225 276 0 58 chr4 12545590 12545677 -189782670 - L2 LINE L2 0 3272 3191 237 65 0 0 chr4 12546034 12546065 -189782282 + (TG)n Simple_repeat Simple_repeat 2 32 0 594 320 35 27 chr4 12546067 12546323 -189782024 + MIR SINE MIR 5 262 0 492 297 19 7 chr4 12546710 12546865 -189781482 - MIR3 SINE MIR -29 179 23 270 193 0 0 chr4 12547377 12547434 -189780913 + (TG)n Simple_repeat Simple_repeat 2 58 0 1098 185 0 0 chr4 12547774 12547952 -189780395 - AluJb SINE Alu 0 312 135 1840 272 87 10 chr4 12548044 12548639 -189779708 - L1ME1 LINE L1 -27 6139 5499 1121 259 34 37 chr4 12548641 12548962 -189779385 - MLT1A1 LTR MaLR -38 327 8 695 239 157 28 chr4 12549053 12549442 -189778905 - L1ME1 LINE L1 -745 5401 4963 414 115 63 35 chr4 12549505 12549679 -189778668 + (CATAT)n Simple_repeat Simple_repeat 2 180 0 439 116 85 21 chr4 12550124 12550609 -189777738 + (CATAT)n Simple_repeat Simple_repeat 1 516 0 416 63 21 95 chr4 12550578 12550768 -189777579 + (TA)n Simple_repeat Simple_repeat 2 177 0 * 347 51 15 113 chr4 12550785 12550980 -189777367 + (TA)n Simple_repeat Simple_repeat 2 177 0 372 167 70 19 chr4 12550986 12551192 -189777155 + (CATAT)n Simple_repeat Simple_repeat 1 216 0 324 132 79 40 chr4 12551546 12551698 -189776649 + (CATAT)n Simple_repeat Simple_repeat 3 160 0 381 59 21 106 chr4 12551703 12552051 -189776296 + (TA)n Simple_repeat Simple_repeat 1 318 0 317 271 156 8 chr4 12552065 12552103 -189776244 - L1ME1 LINE L1 -1941 4205 4174 180 0 0 0 chr4 12552103 12552123 -189776224 + (ATTG)n Simple_repeat Simple_repeat 1 20 0 317 271 156 8 chr4 12552123 12552206 -189776141 - L1ME1 LINE L1 -1972 4174 4066 991 287 77 58 chr4 12552237 12552280 -189776067 - L1ME1 LINE L1 -3139 3007 2966 432 82 0 0 chr4 12552280 12552341 -189776006 + (TA)n Simple_repeat Simple_repeat 1 61 0 991 287 77 58 chr4 12552341 12552995 -189775352 - L1ME1 LINE L1 -3180 2966 2287 1518 213 19 19 chr4 12552995 12553357 -189774990 + MLT1A1 LTR MaLR 1 362 -3 991 287 77 58 chr4 12553357 12553539 -189774808 - L1ME1 LINE L1 -3859 2287 2110 13016 260 25 12 chr4 12553550 12554129 -189774218 - L1PA12 LINE L1 -759 6825 6255 300 27 0 0 chr4 12554129 12554166 -189774181 + (TG)n Simple_repeat Simple_repeat 2 38 0 13016 260 25 12 chr4 12554166 12557557 -189770790 - L1PA12 LINE L1 -1329 6255 2800 615 307 0 0 chr4 12557552 12557689 -189770658 - L1PA12 LINE L1 -5967 1617 1481 * 2845 16 0 0 chr4 12557704 12558020 -189770327 + AluYb8 SINE Alu 1 316 -2 1027 194 5 5 chr4 12558048 12558265 -189770082 - MLT1-int LTR MaLR -1172 199 1 * 5688 204 31 2 chr4 12558265 12559289 -189769058 - L1PA15-16 LINE L1 -5776 1073 20 1592 220 0 72 chr4 12559499 12559899 -189768448 + MLT1B LTR MaLR 15 385 -5 1290 202 16 18 chr4 12559904 12560492 -189767855 + MLT1B-int LTR MaLR 1 883 -488 405 214 67 17 chr4 12560612 12560734 -189767613 + MLT1A2 LTR MaLR 245 465 -2 918 270 77 34 chr4 12560739 12561183 -189767164 + MLT1C LTR MaLR 5 467 0 24 0 0 0 chr4 12561709 12561733 -189766614 + AT_rich Low_complexity Low_complexity 1 24 0 276 357 100 7 chr4 12561936 12562093 -189766254 + L2 LINE L2 2652 2793 -521 198 0 0 0 chr4 12562093 12562115 -189766232 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 276 357 100 7 chr4 12562115 12562248 -189766099 + L2 LINE L2 2793 2969 -345 4836 73 19 0 chr4 12562439 12563059 -189765288 + PABL_A LTR ERV1 26 657 -3 323 254 45 36 chr4 12563212 12563322 -189765025 + MLT1H1 LTR MaLR 441 551 -4 342 257 40 10 chr4 12563331 12563432 -189764915 - LTR67 LTR ERVL -43 514 411 452 305 13 13 chr4 12564173 12564324 -189764023 + MIR SINE MIR 2 152 -110 329 281 7 0 chr4 12564373 12564508 -189763839 + (CATATA)n Simple_repeat Simple_repeat 3 138 0 1460 205 59 137 chr4 12564789 12565301 -189763046 + MER70A LTR ERVL 1 472 0 225 339 37 46 chr4 12565416 12565600 -189762747 - MIR3 SINE MIR -63 145 3 522 296 39 0 chr4 12565812 12565991 -189762356 - MER5A DNA MER1_type 0 189 4 373 304 20 98 chr4 12566066 12566362 -189761985 - LTR16A LTR ERVL -12 438 166 277 294 65 0 chr4 12566628 12566720 -189761627 + MIR SINE MIR 39 136 -126 1385 251 137 7 chr4 12567080 12567490 -189760857 - MLT1F LTR MaLR -74 468 6 237 281 8 70 chr4 12568478 12568606 -189759741 + MIR SINE MIR 16 135 -73 1627 156 181 8 chr4 12568836 12569201 -189759146 + MSTA LTR MaLR 1 428 0 271 163 33 22 chr4 12569255 12569347 -189759000 + (TA)n Simple_repeat Simple_repeat 1 93 0 309 172 0 0 chr4 12570199 12570263 -189758084 + CT-rich Low_complexity Low_complexity 3 66 0 2101 136 0 0 chr4 12570265 12570574 -189757773 - AluY SINE Alu -2 309 1 882 92 8 0 chr4 12570574 12570693 -189757654 - AluSq/x SINE Alu -177 136 17 264 351 152 0 chr4 12571117 12571288 -189757059 + MIR SINE MIR 53 249 -13 2083 208 36 5 chr4 12571294 12571707 -189756640 + MSTB LTR MaLR 1 426 0 194 359 162 6 chr4 12571806 12571973 -189756374 + MIR SINE MIR 14 206 -56 1065 228 4 4 chr4 12572240 12572468 -189755879 + L1MA9 LINE L1 49 276 -6754 9140 257 44 27 chr4 12572487 12577400 -189750947 + L1MA9 LINE L1 1217 5916 -1190 1110 90 0 0 chr4 12577400 12577544 -189750803 + AluY SINE Alu 155 298 -13 4431 190 28 84 chr4 12577546 12578968 -189749379 + L1MA9 LINE L1 5911 7272 0 331 307 63 24 chr4 12579130 12579257 -189749090 - L2 LINE L2 -25 3247 3116 269 263 26 0 chr4 12579276 12579352 -189748995 - MER116 DNA Mariner 0 80 3 189 319 11 53 chr4 12580173 12580267 -189748080 - MIR SINE MIR -1 261 172 204 40 0 0 chr4 12580405 12580430 -189747917 + (TGAA)n Simple_repeat Simple_repeat 2 26 0 1647 179 14 3 chr4 12580598 12580895 -189747452 - MLT1A1 LTR MaLR -49 316 17 268 216 0 0 chr4 12581083 12581134 -189747213 - MIR SINE MIR -135 127 77 191 321 115 32 chr4 12581389 12581607 -189746740 - L2 LINE L2 -927 2387 2152 2511 159 65 24 chr4 12582273 12582813 -189745534 + L1MA7 LINE L1 5730 6291 0 552 236 21 7 chr4 12583154 12583294 -189745053 - MER103 DNA DNA -24 142 1 21 0 0 0 chr4 12584323 12584344 -189744003 + AT_rich Low_complexity Low_complexity 1 21 0 1254 221 18 11 chr4 12584748 12585024 -189743323 + AluJo SINE Alu 16 293 -19 23 54 0 0 chr4 12585445 12585482 -189742865 + AT_rich Low_complexity Low_complexity 1 37 0 1918 96 54 0 chr4 12585904 12586164 -189742183 + AluSp SINE Alu 3 276 -37 270 0 0 0 chr4 12586168 12586198 -189742149 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 22 70 0 0 chr4 12588412 12588455 -189739892 + AT_rich Low_complexity Low_complexity 1 43 0 25 51 0 0 chr4 12589211 12589250 -189739097 + AT_rich Low_complexity Low_complexity 1 39 0 186 213 148 33 chr4 12589313 12589374 -189738973 + MIR SINE MIR 87 154 -108 813 246 69 3 chr4 12589489 12589790 -189738557 - MER33 DNA MER1_type -6 318 1 383 342 31 26 chr4 12589902 12590095 -189738252 - MIR3 SINE MIR -1 207 14 2452 146 21 17 chr4 12590219 12590638 -189737709 - MSTA LTR MaLR -7 421 1 250 267 25 0 chr4 12591280 12591393 -189736954 + MIR SINE MIR 40 153 -64 387 0 0 0 chr4 12591864 12591907 -189736440 + (TA)n Simple_repeat Simple_repeat 1 43 0 9078 164 18 7 chr4 12592037 12592732 -189735615 - L1MA1 LINE L1 -4 7717 7031 477 0 0 0 chr4 12592732 12592785 -189735562 + (TG)n Simple_repeat Simple_repeat 2 54 0 9078 164 18 7 chr4 12592785 12594845 -189733502 - L1MA1 LINE L1 -690 7031 4930 527 186 31 39 chr4 12594992 12595121 -189733226 + THE1C LTR MaLR 198 325 -50 3490 189 30 7 chr4 12595130 12596314 -189732033 - L1MA1 LINE L1 -3384 4181 2967 1800 180 46 25 chr4 12596314 12596681 -189731666 + THE1C LTR MaLR 1 375 0 878 169 12 0 chr4 12596682 12596842 -189731505 + THE1C-int LTR MaLR 2 163 -1417 27143 104 9 3 chr4 12596846 12601770 -189726577 - L1PA7 LINE L1 -8 6146 1192 856 133 7 40 chr4 12601773 12601924 -189726423 + THE1C LTR MaLR 230 375 0 10551 156 33 5 chr4 12601924 12603728 -189724619 - L1MA1 LINE L1 -4594 2971 1117 4468 215 36 18 chr4 12603738 12604715 -189723632 - L1MA1 LINE L1 -6562 1003 10 334 268 98 8 chr4 12605068 12605191 -189723156 - MIR SINE MIR -64 198 65 250 310 131 41 chr4 12605943 12606088 -189722259 + L2 LINE L2 3156 3313 0 180 314 86 0 chr4 12606235 12606305 -189722042 + L3 LINE CR1 1007 1082 -495 246 336 57 29 chr4 12606438 12606467 -189721880 - L2 LINE L2 -2 3311 3284 2405 148 25 23 chr4 12606467 12606898 -189721449 - MSTB1 LTR MaLR 0 432 1 246 336 57 29 chr4 12606898 12607008 -189721339 - L2 LINE L2 -29 3284 3168 2143 172 42 32 chr4 12607042 12607583 -189720764 + MLT2A2 LTR ERVL 4 554 0 503 285 55 84 chr4 12607598 12607841 -189720506 - L1MC4a LINE L1 -1725 6083 5859 2026 183 6 81 chr4 12607841 12608310 -189720037 - Tigger2a DNA MER2_type 0 434 1 503 285 55 84 chr4 12608310 12608540 -189719807 - L1MC4a LINE L1 -1949 5859 5624 2059 136 14 0 chr4 12608558 12608853 -189719494 - AluSx SINE Alu -13 299 1 33 25 0 0 chr4 12609655 12609695 -189718652 + AT_rich Low_complexity Low_complexity 1 40 0 1556 191 6 41 chr4 12610307 12610621 -189717726 + AluJb SINE Alu 1 303 -9 180 111 0 0 chr4 12610939 12610966 -189717381 + (TG)n Simple_repeat Simple_repeat 2 28 0 24 53 0 0 chr4 12611405 12611443 -189716904 + AT_rich Low_complexity Low_complexity 1 38 0 252 184 0 0 chr4 12611999 12612048 -189716299 + (CATA)n Simple_repeat Simple_repeat 2 50 0 188 330 17 68 chr4 12612826 12612944 -189715403 + MIR SINE MIR 63 174 -88 535 318 8 34 chr4 12612952 12613188 -189715159 - L2 LINE L2 -2 3311 3082 428 317 33 0 chr4 12613289 12613409 -189714938 - MIR SINE MIR -31 231 108 23 0 0 0 chr4 12614521 12614544 -189713803 + AT_rich Low_complexity Low_complexity 1 23 0 341 320 43 43 chr4 12614767 12614998 -189713349 - MIR SINE MIR 0 262 32 567 332 101 49 chr4 12616479 12617150 -189711197 + L2 LINE L2 1773 2478 -836 300 227 76 0 chr4 12617517 12617583 -189710764 + L2 LINE L2 3201 3271 -1 1953 147 7 10 chr4 12617697 12617997 -189710350 + AluSc SINE Alu 1 299 -10 188 360 132 37 chr4 12618304 12618440 -189709907 + L2 LINE L2 3122 3270 -2 3243 139 33 6 chr4 12618453 12618992 -189709355 + MER41C LTR ERV1 1 554 0 1592 165 66 33 chr4 12619192 12619555 -189708792 - THE1C LTR MaLR 0 375 1 342 316 124 19 chr4 12619684 12620007 -189708340 - MLT1J2 LTR MaLR -58 392 36 818 328 50 39 chr4 12620103 12620694 -189707653 - L2 LINE L2 -5 3308 2704 294 95 0 0 chr4 12620905 12620947 -189707400 + (A)n Simple_repeat Simple_repeat 1 42 0 414 357 58 6 chr4 12621646 12621817 -189706530 - MIR SINE MIR -62 200 21 188 343 58 44 chr4 12621853 12621990 -189706357 + MIR SINE MIR 60 198 -64 222 280 160 10 chr4 12622016 12622116 -189706231 - MIR SINE MIR -29 233 119 714 253 134 36 chr4 12622188 12622576 -189705771 - Zaphod DNA AcHobo 0 4031 3606 1299 199 86 65 chr4 12622594 12623152 -189705195 - Zaphod DNA AcHobo -3051 980 411 1541 223 112 48 chr4 12623166 12623605 -189704742 + MLT2B1 LTR ERVL 1 467 -53 285 51 0 0 chr4 12623616 12623655 -189704692 + (TA)n Simple_repeat Simple_repeat 1 39 0 282 128 0 0 chr4 12624010 12624057 -189704290 + MLT2B1 LTR ERVL 466 512 -8 320 311 60 46 chr4 12624219 12624370 -189703977 - Zaphod DNA AcHobo -3804 227 75 272 231 134 82 chr4 12624435 12624569 -189703778 - MER58B DNA MER1_type -15 326 186 1517 156 75 17 chr4 12625370 12625665 -189702682 + AluSx SINE Alu 1 312 0 453 173 9 18 chr4 12625670 12625780 -189702567 + GA-rich Low_complexity Low_complexity 3 111 0 1380 204 0 38 chr4 12625782 12626071 -189702276 + AluJo SINE Alu 17 294 -18 257 333 0 0 chr4 12626658 12626736 -189701611 + (TG)n Simple_repeat Simple_repeat 2 79 0 223 327 154 0 chr4 12627150 12627254 -189701093 - L2 LINE L2 0 3313 3194 292 349 170 0 chr4 12627320 12627532 -189700815 - MIR SINE MIR -13 249 2 1289 232 19 40 chr4 12628658 12629048 -189699299 - MER66A LTR ERV1 -40 438 88 231 36 0 0 chr4 12629456 12629484 -189698863 + (A)n Simple_repeat Simple_repeat 1 28 0 1496 149 8 0 chr4 12629659 12629907 -189698440 - L1MA4 LINE L1 -278 6022 5773 1260 280 81 37 chr4 12630310 12631151 -189697196 + L1ME3A LINE L1 5122 5996 -174 617 297 93 45 chr4 12631883 12632039 -189696308 + LTR16A LTR ERVL 23 170 -280 2035 192 68 48 chr4 12632039 12632540 -189695807 - MER67D LTR ERV1 -1 513 3 617 297 93 45 chr4 12632540 12632780 -189695567 + LTR16A LTR ERVL 170 438 -12 24 0 0 0 chr4 12633398 12633422 -189694925 + AT_rich Low_complexity Low_complexity 1 24 0 1145 268 31 25 chr4 12633655 12634009 -189694338 + MLT1A1 LTR MaLR 10 365 0 23 54 0 0 chr4 12634328 12634365 -189693982 + AT_rich Low_complexity Low_complexity 1 37 0 380 291 58 7 chr4 12634368 12634646 -189693701 + L1ME2 LINE L1 2924 3215 -2931 27 0 0 0 chr4 12634718 12634745 -189693602 + AT_rich Low_complexity Low_complexity 1 27 0 593 309 125 45 chr4 12635164 12636060 -189692287 + L1ME2 LINE L1 4976 5947 -217 22 0 0 0 chr4 12636065 12636087 -189692260 + AT_rich Low_complexity Low_complexity 1 22 0 284 236 28 0 chr4 12636093 12636165 -189692182 - LTR16A LTR ERVL -8 442 369 2153 179 33 31 chr4 12636167 12636591 -189691756 - MSTB LTR MaLR -1 425 1 7700 218 39 13 chr4 12636591 12637523 -189690824 - MSTB-int LTR MaLR 0 1651 658 1470 39 0 11 chr4 12637523 12637705 -189690642 + L1PA4 LINE L1 5969 6148 -7 7700 218 39 13 chr4 12637705 12638381 -189689966 - MSTB-int LTR MaLR -993 658 1 2311 176 19 30 chr4 12638381 12638812 -189689535 - MSTB LTR MaLR 0 426 1 2644 93 6 6 chr4 12638912 12639276 -189689071 + THE1B LTR MaLR 1 364 0 29 60 0 0 chr4 12639655 12639705 -189688642 + AT_rich Low_complexity Low_complexity 1 50 0 21 0 0 0 chr4 12639891 12639912 -189688435 + AT_rich Low_complexity Low_complexity 1 21 0 1585 264 21 17 chr4 12640166 12640586 -189687761 + MLT1A2-int LTR MaLR 1314 1735 0 764 204 39 185 chr4 12640586 12641023 -189687324 + MLT1A2 LTR MaLR 1 373 -1 968 344 33 7 chr4 12641025 12641455 -189686892 - LTR16C LTR ERVL -19 472 32 278 336 87 47 chr4 12641921 12642198 -189686149 + L3 LINE CR1 1262 1549 -28 962 191 158 51 chr4 12643516 12643789 -189684558 + AluJb SINE Alu 1 302 0 1887 141 25 0 chr4 12643937 12644239 -189684108 - AluSg SINE Alu 0 309 1 302 359 29 34 chr4 12644633 12644839 -189683508 + MIR SINE MIR 19 223 -39 183 329 174 34 chr4 12645079 12645286 -189683061 - L2 LINE L2 -177 3095 2860 2077 250 83 7 chr4 12646421 12647026 -189681321 - MLT1E1 LTR MaLR -2 652 2 207 286 95 0 chr4 12647067 12647151 -189681196 - MIR SINE MIR -164 98 7 1330 276 30 58 chr4 12647922 12648528 -189679819 - MLT1E LTR MaLR 0 593 5 188 389 11 11 chr4 12648533 12648623 -189679724 + MIR SINE MIR 3 92 -170 2594 171 19 42 chr4 12648666 12649258 -189679089 - L1MA7 LINE L1 0 6291 5714 212 348 45 0 chr4 12649349 12649438 -189678909 + MIR SINE MIR 65 157 -105 1022 183 31 0 chr4 12650291 12650482 -189677865 - MSTB LTR MaLR 0 426 230 1307 114 0 0 chr4 12650484 12650659 -189677688 - AluSx SINE Alu -137 175 1 1192 191 0 0 chr4 12650660 12650859 -189677488 - MSTB LTR MaLR -227 199 1 1577 188 68 9 chr4 12651125 12651465 -189676882 - MLT1A1 LTR MaLR -2 363 4 1572 213 19 35 chr4 12652390 12652756 -189675591 + MLT1A1 LTR MaLR 1 360 -5 347 262 130 92 chr4 12653363 12653608 -189674739 + L1MEc LINE L1 1258 1492 -4904 2029 128 57 35 chr4 12653608 12653975 -189674372 - THE1C LTR MaLR 0 375 1 347 262 130 92 chr4 12653975 12654315 -189674032 + L1MEc LINE L1 1492 1818 -4578 186 0 88 0 chr4 12654315 12654349 -189673998 + (TA)n Simple_repeat Simple_repeat 2 38 0 347 262 130 92 chr4 12654349 12654757 -189673590 + L1MEc LINE L1 1818 2289 -4107 2243 56 11 31 chr4 12655343 12655653 -189672694 - AluY SINE Alu 0 304 1 338 215 77 62 chr4 12655749 12655879 -189672468 + L1MEc LINE L1 3140 3271 -2944 367 314 48 67 chr4 12656029 12656360 -189671987 - L1MC4a LINE L1 -1880 5928 5604 236 268 81 16 chr4 12656500 12656623 -189671724 - L1P LINE L1 -736 5420 5290 21 0 0 0 chr4 12657428 12657449 -189670898 + AT_rich Low_complexity Low_complexity 1 21 0 1709 164 0 41 chr4 12657542 12657834 -189670513 - AluJb SINE Alu -30 282 3 2628 57 40 6 chr4 12658134 12658484 -189669863 + L1PA8 LINE L1 5810 6171 -1 431 139 0 13 chr4 12658739 12658818 -189669529 + (CA)n Simple_repeat Simple_repeat 2 79 0 515 293 44 68 chr4 12659056 12659261 -189669086 + LTR16C LTR ERVL 167 366 -125 * 1408 199 46 69 chr4 12659251 12659450 -189668897 - MLT1B LTR MaLR -6 384 197 441 0 0 0 chr4 12659450 12659499 -189668848 + (CA)n Simple_repeat Simple_repeat 2 50 0 1408 199 46 69 chr4 12659499 12659691 -189668656 - MLT1B LTR MaLR -193 197 2 209 219 0 0 chr4 12660628 12660669 -189667678 + MIR SINE MIR 99 139 -69 1148 266 7 3 chr4 12660803 12661100 -189667247 + L1MD3 LINE L1 7526 7823 -172 493 263 11 6 chr4 12661326 12661505 -189666842 + (TA)n Simple_repeat Simple_repeat 1 180 0 259 200 0 18 chr4 12661850 12661905 -189666442 + MIR SINE MIR 98 151 -57 367 346 39 8 chr4 12663148 12663278 -189665069 + MIR3 SINE MIR 10 143 -65 452 284 105 37 chr4 12663564 12663754 -189664593 - L2 LINE L2 0 3313 3111 224 327 10 20 chr4 12664188 12664289 -189664058 - L2 LINE L2 -4 3309 3210 220 336 0 49 chr4 12664587 12664709 -189663638 + MIR SINE MIR 91 206 -56 850 299 107 10 chr4 12665308 12665699 -189662648 - LTR16C LTR ERVL 0 491 63 7448 31 11 0 chr4 12665763 12666885 -189661462 - L1PA4 LINE L1 -5 6150 5025 473 296 19 31 chr4 12666885 12667044 -189661303 - MIR SINE MIR -93 169 13 222 37 0 0 chr4 12668354 12668381 -189659966 + (CA)n Simple_repeat Simple_repeat 2 28 0 210 328 43 35 chr4 12668764 12668880 -189659467 - L2 LINE L2 -23 3290 3174 341 325 78 7 chr4 12669231 12669385 -189658962 + MIR SINE MIR 59 223 -39 2478 106 11 16 chr4 12669581 12669958 -189658389 - THE1C LTR MaLR 0 375 1 316 185 37 19 chr4 12669974 12670082 -189658265 + (TA)n Simple_repeat Simple_repeat 1 110 0 277 240 7 52 chr4 12670085 12670239 -189658108 + A-rich Low_complexity Low_complexity 6 152 0 885 135 44 1 chr4 12670239 12670394 -189657953 - L1MA3 LINE L1 -21 6270 6109 2357 234 29 27 chr4 12670519 12671080 -189657267 - MER68 LTR ERV1 0 562 1 1669 196 40 14 chr4 12671526 12671873 -189656474 + MLT1A1 LTR MaLR 10 365 0 393 246 57 41 chr4 12672045 12672167 -189656180 - L2 LINE L2 -3 3310 3187 201 324 42 0 chr4 12672187 12672258 -189656089 - L3 LINE CR1 -881 696 623 361 315 35 56 chr4 12672611 12672808 -189655539 - L3 LINE CR1 -1368 209 17 2154 99 6 16 chr4 12672911 12673224 -189655123 - AluSg SINE Alu 0 310 1 457 298 30 0 chr4 12673804 12673935 -189654412 + MIR3 SINE MIR 20 154 -54 26 0 0 0 chr4 12674522 12674548 -189653799 + AT_rich Low_complexity Low_complexity 1 26 0 5023 172 45 22 chr4 12675495 12675981 -189652366 - L1MA4 LINE L1 0 6300 5827 2355 131 14 3 chr4 12675981 12676341 -189652006 + THE1B LTR MaLR 1 364 0 5023 172 45 22 chr4 12676341 12677820 -189650527 - L1MA4 LINE L1 -473 5827 4305 272 229 48 12 chr4 12677851 12677934 -189650413 + L1ME LINE L1 5529 5614 -507 271 234 204 61 chr4 12678138 12678369 -189649978 - ORSL DNA AcHobo 0 275 12 899 367 83 0 chr4 12678745 12679205 -189649142 - MLT1G LTR MaLR -2 588 91 299 271 82 86 chr4 12679313 12679538 -189648809 - MLT1G-int LTR MaLR -6 1365 1141 207 0 0 0 chr4 12679538 12679561 -189648786 + (TC)n Simple_repeat Simple_repeat 1 23 0 * 360 0 0 0 chr4 12679560 12679600 -189648747 + (CA)n Simple_repeat Simple_repeat 1 40 0 299 271 82 86 chr4 12679561 12679654 -189648693 - MLT1G-int LTR MaLR -230 1141 1087 479 211 114 53 chr4 12679963 12680077 -189648270 + FLAM_C SINE Alu 1 121 -22 219 69 0 0 chr4 12680077 12680106 -189648241 + (TA)n Simple_repeat Simple_repeat 1 29 0 192 216 0 0 chr4 12680436 12680487 -189647860 + (CATATA)n Simple_repeat Simple_repeat 4 54 0 677 163 16 24 chr4 12680506 12680629 -189647718 + FRAM SINE Alu 12 133 -43 258 192 0 0 chr4 12680640 12680692 -189647655 + Alu SINE Alu 239 290 -12 272 316 18 9 chr4 12681403 12681517 -189646830 - MLT1G-int LTR MaLR -1619 116 2 1306 288 79 21 chr4 12681533 12682108 -189646239 - MLT1G LTR MaLR -18 572 3 211 376 14 21 chr4 12682752 12682893 -189645454 - MIR3 SINE MIR -67 141 2 189 277 69 30 chr4 12683583 12683684 -189644663 + MIR SINE MIR 79 183 -79 1797 143 69 69 chr4 12683696 12684075 -189644272 + MLT1B LTR MaLR 12 390 0 237 276 11 24 chr4 12684971 12685070 -189643277 - MIR SINE MIR -96 112 15 210 143 61 0 chr4 12685109 12685158 -189643189 + (CAAA)n Simple_repeat Simple_repeat 4 55 0 1184 66 7 0 chr4 12685606 12685757 -189642590 + AluY SINE Alu 152 303 -8 1319 315 95 35 chr4 12686324 12686916 -189641431 - L2 LINE L2 -8 3305 2639 2233 123 0 0 chr4 12686916 12687224 -189641123 + AluSg SINE Alu 1 308 -2 1319 315 95 35 chr4 12687224 12687518 -189640829 - L2 LINE L2 -674 2639 2364 267 323 69 39 chr4 12687640 12687770 -189640577 - L2 LINE L2 -219 3053 2920 2257 230 9 25 chr4 12688153 12688610 -189639737 + MLT2B1 LTR ERVL 1 463 -57 285 29 0 0 chr4 12688610 12688644 -189639703 + (TCCC)n Simple_repeat Simple_repeat 2 35 0 2257 230 9 25 chr4 12688644 12688673 -189639674 + MLT2B1 LTR ERVL 463 481 -39 699 108 0 0 chr4 12688673 12688784 -189639563 + (TCTA)n Simple_repeat Simple_repeat 2 112 0 2257 230 9 25 chr4 12688784 12688822 -189639525 + MLT2B1 LTR ERVL 481 518 -2 268 314 86 9 chr4 12689351 12689459 -189638888 - MIR SINE MIR -63 145 53 302 289 36 0 chr4 12689579 12689662 -189638685 + L2 LINE L2 3227 3312 -1 204 158 0 0 chr4 12689814 12689852 -189638495 + (TG)n Simple_repeat Simple_repeat 1 38 0 698 243 107 6 chr4 12690072 12690241 -189638106 + MER58A DNA MER1_type 2 187 -37 287 360 0 20 chr4 12690265 12690365 -189637982 - MIR3 SINE MIR -48 160 63 2283 98 0 0 chr4 12691319 12691615 -189636732 - AluSg SINE Alu -14 296 1 249 196 36 0 chr4 12691825 12691881 -189636466 - LTR67 LTR ERVL -5 552 495 232 368 42 14 chr4 12692465 12692609 -189635738 + MLT1K LTR MaLR 354 501 -87 273 29 0 0 chr4 12693161 12693195 -189635152 + (CA)n Simple_repeat Simple_repeat 1 34 0 210 71 0 0 chr4 12693202 12693230 -189635117 + (GAAAA)n Simple_repeat Simple_repeat 5 32 0 338 288 77 35 chr4 12693502 12693672 -189634675 - MIR SINE MIR -33 229 53 1301 228 39 43 chr4 12694129 12694595 -189633752 - MLT2C2 LTR ERVL 0 464 1 541 256 23 118 chr4 12697698 12698003 -189630344 + L2 LINE L2 3038 3313 0 21 0 0 0 chr4 12699479 12699500 -189628847 + AT_rich Low_complexity Low_complexity 1 21 0 308 246 171 40 chr4 12700025 12700200 -189628147 + MIR SINE MIR 53 250 -12 2094 110 20 6 chr4 12701001 12701437 -189626910 - L1PA12 LINE L1 -589 5574 5135 * 2581 110 19 0 chr4 12701435 12701809 -189626538 + L1PA12 LINE L1 5578 5958 -210 304 229 48 19 chr4 12701951 12702056 -189626291 + L1PA12 LINE L1 5911 6018 -150 477 191 48 0 chr4 12702064 12702169 -189626178 + L1PA12 LINE L1 6052 6161 -7 21 0 0 0 chr4 12702169 12702190 -189626157 + AT_rich Low_complexity Low_complexity 1 21 0 403 308 58 38 chr4 12702737 12702988 -189625359 + MIR SINE MIR 8 261 -1 246 335 56 1 chr4 12703093 12703201 -189625146 + MIR SINE MIR 49 160 -62 333 321 43 74 chr4 12703247 12703546 -189624801 + L2 LINE L2 2207 2496 -818 279 279 0 0 chr4 12703779 12703847 -189624500 + L2 LINE L2 3163 3230 -42 2278 82 0 0 chr4 12705538 12705863 -189622484 + AluY SINE Alu 1 325 0 420 317 44 29 chr4 12705916 12706121 -189622226 - L2 LINE L2 -10 3303 3096 263 317 94 27 chr4 12706100 12706324 -189622023 - L2 LINE L2 -3064 250 12 * 7316 36 15 7 chr4 12706582 12707945 -189620402 - L1PA4 LINE L1 -3 6152 4785 2010 132 14 0 chr4 12707961 12708257 -189620090 + AluSx SINE Alu 1 300 -12 180 0 0 0 chr4 12708257 12708277 -189620070 + (GGGGA)n Simple_repeat Simple_repeat 1 20 0 35 24 0 0 chr4 12708598 12708640 -189619707 + AT_rich Low_complexity Low_complexity 1 42 0 455 324 66 41 chr4 12709619 12710011 -189618336 + L1MC/D LINE L1 2676 3077 -3069 35 78 0 0 chr4 12710155 12710232 -189618115 + AT_rich Low_complexity Low_complexity 1 77 0 378 261 79 94 chr4 12711262 12711465 -189616882 - MIR SINE MIR -58 204 5 342 295 6 64 chr4 12711472 12711645 -189616702 + L1MC/D LINE L1 5305 5467 -2341 325 93 0 0 chr4 12711683 12711737 -189616610 + Alu SINE Alu 247 300 0 2017 125 24 0 chr4 12711758 12712047 -189616300 + AluSg SINE Alu 1 296 -14 254 308 113 8 chr4 12712126 12712259 -189616088 + MLT1I LTR MaLR 3 149 -260 24 32 0 0 chr4 12712272 12712303 -189616044 + AT_rich Low_complexity Low_complexity 1 31 0 1944 106 0 35 chr4 12712392 12712674 -189615673 + AluSg SINE Alu 1 272 -38 184 255 21 0 chr4 12712920 12712967 -189615380 + L2 LINE L2 3213 3260 -12 23 54 0 0 chr4 12714372 12714409 -189613938 + AT_rich Low_complexity Low_complexity 1 37 0 195 162 0 0 chr4 12714650 12714687 -189613660 + (ATG)n Simple_repeat Simple_repeat 1 37 0 271 261 0 14 chr4 12714862 12714931 -189613416 + GA-rich Low_complexity Low_complexity 3 70 0 946 275 104 51 chr4 12716470 12717055 -189611292 - L1ME3A LINE L1 0 6170 5555 802 149 52 112 chr4 12717123 12717391 -189610956 + L1MA7 LINE L1 6040 6291 0 934 210 7 7 chr4 12717412 12724261 -189604086 - ALR/Alpha Satellite centromeric -2 9847 3001 2066 82 21 85 chr4 12724261 12724590 -189603757 - AluY SINE Alu -3 308 1 934 210 7 7 chr4 12724590 12725468 -189602879 - ALR/Alpha Satellite centromeric -6848 3001 2125 2099 121 0 34 chr4 12725468 12725790 -189602557 - AluY SINE Alu 0 311 1 934 210 7 7 chr4 12725790 12727257 -189601090 - ALR/Alpha Satellite centromeric -7724 2125 1 905 211 13 8 chr4 12727273 12730805 -189597542 - ALR/Alpha Satellite centromeric 0 3549 1 992 193 7 0 chr4 12730826 12732655 -189595692 - ALR/Alpha Satellite centromeric 0 1841 1 913 194 24 6 chr4 12732668 12733373 -189594974 - ALR/Alpha Satellite centromeric 0 717 1 637 279 124 18 chr4 12733382 12733834 -189594513 - L1M4 LINE L1 -2193 3953 3454 26 0 0 0 chr4 12733867 12733893 -189594454 + AT_rich Low_complexity Low_complexity 1 26 0 25 0 0 0 chr4 12733915 12733940 -189594407 + AT_rich Low_complexity Low_complexity 1 25 0 2663 112 19 2 chr4 12733940 12734358 -189593989 - L1PA13 LINE L1 -5 6158 5734 736 173 8 16 chr4 12734358 12734485 -189593862 - FRAM SINE Alu -22 154 29 2384 203 60 41 chr4 12734505 12735213 -189593134 + LTR1B LTR ERV1 43 762 -23 591 208 0 0 chr4 12735250 12735356 -189592991 - FLAM_C SINE Alu -37 106 1 903 259 60 78 chr4 12735487 12736258 -189592089 - L1M4 LINE L1 -3180 2966 2210 471 232 0 27 chr4 12736323 12736435 -189591912 - MER103 DNA DNA -34 132 24 245 235 39 0 chr4 12736849 12736900 -189591447 - MLT1J2 LTR MaLR -123 327 275 2469 48 0 32 chr4 12737201 12737514 -189590833 + AluY SINE Alu 1 303 -8 205 358 133 0 chr4 12737680 12737831 -189590516 - MIR SINE MIR -14 248 78 263 267 30 61 chr4 12738597 12738728 -189589619 - MIR SINE MIR -42 220 94 1119 250 75 50 chr4 12739049 12739473 -189588874 + MLT1D LTR MaLR 3 437 -68 356 181 28 0 chr4 12740579 12740651 -189587696 - AluJ/FRAM SINE Alu -2 300 227 1959 170 40 36 chr4 12741233 12741778 -189586569 - MLT2A2 LTR ERVL 0 554 5 238 284 0 15 chr4 12741900 12741967 -189586380 + MLT1G1 LTR MaLR 1 66 -524 351 254 210 17 chr4 12742089 12742270 -189586077 + MLT1G1 LTR MaLR 33 248 -282 * 376 340 35 35 chr4 12742266 12742410 -189585937 + MLT1G1 LTR MaLR 374 517 -78 4665 120 52 11 chr4 12742415 12743158 -189585189 - MER4E LTR ERV1 -5 774 1 247 247 0 13 chr4 12743164 12743241 -189585106 + MLT1G1 LTR MaLR 520 595 0 342 284 69 17 chr4 12743943 12744059 -189584288 - MER5A DNA MER1_type -30 159 38 255 288 96 40 chr4 12743957 12744082 -189584265 + MER5A DNA MER1_type 55 186 -3 * 246 275 92 50 chr4 12744211 12744331 -189584016 + LTR16A LTR ERVL 1 125 -325 394 238 121 44 chr4 12744937 12745143 -189583204 + L1MC4 LINE L1 6465 6686 -1356 303 104 0 0 chr4 12745196 12745244 -189583103 + (CA)n Simple_repeat Simple_repeat 2 49 0 1117 290 144 27 chr4 12745269 12745782 -189582565 + MLT1G1 LTR MaLR 23 595 0 247 151 38 38 chr4 12745786 12745839 -189582508 - L2 LINE L2 -950 2364 2312 28 61 0 0 chr4 12745886 12745935 -189582412 + AT_rich Low_complexity Low_complexity 1 49 0 252 315 22 11 chr4 12745989 12746078 -189582269 - L2 LINE L2 -639 2675 2586 279 356 111 0 chr4 12746390 12746525 -189581822 + MIR SINE MIR 103 252 -10 192 40 0 0 chr4 12747543 12747568 -189580779 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 291 294 49 0 chr4 12747722 12747824 -189580523 + MIR SINE MIR 32 138 -124 338 61 20 0 chr4 12748054 12748103 -189580244 + (CA)n Simple_repeat Simple_repeat 2 51 0 338 321 80 28 chr4 12748688 12748900 -189579447 + MIR SINE MIR 10 232 -30 366 333 76 18 chr4 12749037 12749262 -189579085 + L2 LINE L2 2828 3065 -248 321 278 113 46 chr4 12749529 12749723 -189578624 + MIR SINE MIR 26 232 -30 8046 248 54 18 chr4 12749916 12750670 -189577677 - L1MB7 LINE L1 -19 6663 5938 4996 150 29 4 chr4 12750670 12752219 -189576128 - L1PA13 LINE L1 0 6163 4591 8046 248 54 18 chr4 12752219 12752623 -189575724 - L1MB7 LINE L1 -744 5938 5550 522 70 0 0 chr4 12752623 12752694 -189575653 + (TAGA)n Simple_repeat Simple_repeat 2 72 0 8046 248 54 18 chr4 12752694 12755209 -189573138 - L1MB7 LINE L1 -1132 5550 2847 457 182 0 0 chr4 12755209 12755286 -189573061 + U6 snRNA snRNA 31 107 0 626 281 83 45 chr4 12755289 12756242 -189572105 - L1MB7 LINE L1 -3785 2887 1730 * 3648 152 3 8 chr4 12756240 12756832 -189571515 + L1PA15 LINE L1 5556 6144 -21 1337 252 23 31 chr4 12756846 12757235 -189571112 - L1MB7 LINE L1 -6149 393 8 3839 119 0 0 chr4 12757681 12758234 -189570113 + MER41A LTR ERV1 2 554 0 1210 219 25 4 chr4 12758737 12759011 -189569336 - AluJo SINE Alu -22 290 11 1137 299 139 14 chr4 12759566 12760334 -189568013 + Charlie8 DNA MER1_type 2 865 -1552 1739 291 59 48 chr4 12760516 12761589 -189566758 + Charlie8 DNA MER1_type 1171 2254 -163 1360 214 33 55 chr4 12761962 12762326 -189566021 - MLT1A1 LTR MaLR 0 365 10 26 30 0 0 chr4 12763400 12763433 -189564914 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr4 12764132 12764153 -189564194 + AT_rich Low_complexity Low_complexity 1 21 0 720 286 48 4 chr4 12764350 12764581 -189563766 + MIR SINE MIR 20 260 -2 268 188 31 42 chr4 12764665 12764761 -189563586 + T-rich Low_complexity Low_complexity 1 95 0 26 30 0 0 chr4 12765040 12765073 -189563274 + AT_rich Low_complexity Low_complexity 1 33 0 451 334 113 36 chr4 12766441 12766611 -189561736 + L3 LINE CR1 1109 1264 -313 237 33 0 0 chr4 12766611 12766641 -189561706 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 451 334 113 36 chr4 12766641 12766805 -189561542 + L3 LINE CR1 1264 1469 -108 530 351 88 39 chr4 12767960 12768367 -189559980 - LTR16A LTR ERVL -6 444 18 925 213 150 57 chr4 12768911 12769245 -189559102 + MLT1A1 LTR MaLR 1 365 0 552 293 140 13 chr4 12769386 12769615 -189558732 + MIR SINE MIR 3 260 -2 183 430 0 0 chr4 12769657 12769743 -189558604 - MIR SINE MIR -170 92 7 251 264 66 44 chr4 12769929 12770020 -189558327 + MIR SINE MIR 119 211 -51 359 180 16 0 chr4 12772415 12772476 -189555871 - L3 LINE CR1 -124 1453 1392 184 227 0 45 chr4 12772568 12772612 -189555735 - L3 LINE CR1 -344 1233 1192 363 297 11 2 chr4 12772989 12773103 -189555244 - MIR SINE MIR -66 142 34 208 270 16 0 chr4 12773125 12773188 -189555159 + (CATATA)n Simple_repeat Simple_repeat 4 67 0 188 306 47 24 chr4 12773291 12773376 -189554971 + MIR SINE MIR 53 139 -123 1564 227 28 18 chr4 12773642 12774034 -189554313 + MSTD LTR MaLR 1 396 0 22 0 0 0 chr4 12774375 12774397 -189553950 + AT_rich Low_complexity Low_complexity 1 22 0 1241 231 98 50 chr4 12775074 12775494 -189552853 + MLT1D LTR MaLR 1 440 -65 2142 176 37 28 chr4 12775506 12776051 -189552296 - MLT2A2 LTR ERVL 0 554 1 313 212 0 0 chr4 12776051 12776116 -189552231 + MLT1D LTR MaLR 441 505 0 2125 83 45 3 chr4 12776504 12776793 -189551554 + AluY SINE Alu 1 301 -10 3396 44 0 0 chr4 12776803 12777214 -189551133 + L1PA5 LINE L1 5419 5829 -325 41317 46 23 6 chr4 12777214 12783262 -189545085 + L1PA3 LINE L1 1 6155 0 2699 51 0 0 chr4 12783272 12783608 -189544739 + L1PA5 LINE L1 5814 6149 -5 21 57 0 0 chr4 12785585 12785620 -189542727 + AT_rich Low_complexity Low_complexity 1 35 0 26755 31 1 0 chr4 12785703 12789734 -189538613 + L1PA2 LINE L1 2124 6155 0 1772 142 151 11 chr4 12789756 12790108 -189538239 - MSTA LTR MaLR -27 401 1 279 200 0 0 chr4 12790138 12790193 -189538154 + Charlie8 DNA MER1_type 1373 1427 -990 355 247 43 91 chr4 12791612 12791798 -189536549 + LTR16A LTR ERVL 268 444 -6 21 89 0 0 chr4 12791872 12791928 -189536419 + AT_rich Low_complexity Low_complexity 1 56 0 218 316 122 31 chr4 12792321 12792419 -189535928 + MIR SINE MIR 21 127 -81 21 57 0 0 chr4 12792662 12792697 -189535650 + AT_rich Low_complexity Low_complexity 1 35 0 504 250 96 0 chr4 12793599 12793735 -189534612 + MER106B DNA MER1_type 1 149 -910 2135 137 0 0 chr4 12795457 12795770 -189532577 + AluSq SINE Alu 1 313 0 320 215 54 43 chr4 12796760 12796853 -189531494 + MIR3 SINE MIR 109 202 -6 765 222 192 45 chr4 12797609 12797875 -189530472 + MLT1A1 LTR MaLR 1 305 -60 922 230 5 15 chr4 12797875 12798113 -189530234 - AluJb SINE Alu 0 320 85 381 103 17 0 chr4 12798117 12798175 -189530172 + MLT1A1 LTR MaLR 398 456 -1 1102 242 70 15 chr4 12799082 12799425 -189528922 + MLT2D LTR ERVL 1 362 -52 208 276 0 0 chr4 12799435 12799493 -189528854 + CT-rich Low_complexity Low_complexity 2 59 0 434 228 0 0 chr4 12799606 12799684 -189528663 + Tigger5 DNA MER2_type 1 78 -2245 362 221 26 0 chr4 12799684 12799761 -189528586 - Tigger5 DNA MER2_type -3 2320 2242 * 423 198 0 12 chr4 12799751 12799832 -189528515 + Tigger5 DNA MER2_type 2242 2321 -2 187 250 0 19 chr4 12800783 12800835 -189527512 + MIR SINE MIR 161 211 -51 896 234 127 7 chr4 12801992 12802283 -189526064 + LTR52 LTR ERVL 94 419 -2 1560 256 45 14 chr4 12802284 12802857 -189525490 + L1ME2 LINE L1 5311 5901 -263 751 306 37 42 chr4 12802857 12803210 -189525137 + LTR16B LTR ERVL 11 361 -103 2188 153 27 17 chr4 12803240 12803651 -189524696 + L1MA8 LINE L1 5457 5871 -420 2367 245 36 40 chr4 12803705 12804272 -189524075 + L1ME2 LINE L1 5140 5701 -463 1808 177 38 16 chr4 12804272 12804639 -189523708 - THE1C LTR MaLR 0 375 1 2367 245 36 40 chr4 12804639 12805094 -189523253 + L1ME2 LINE L1 5701 6156 -8 418 241 86 9 chr4 12805897 12806013 -189522334 - MER63 DNA MER1_type -85 751 1 28 0 0 0 chr4 12806032 12806060 -189522287 + AT_rich Low_complexity Low_complexity 1 28 0 287 305 24 0 chr4 12806180 12806262 -189522085 - MIR SINE MIR -116 146 63 2100 105 129 8 chr4 12806294 12806674 -189521673 + LTR7 LTR ERV1 23 448 -2 18132 96 45 14 chr4 12806676 12809576 -189518771 + HERVH LTR ERV1 1 2987 -4726 5970 74 5 5 chr4 12809570 12810424 -189517923 + HERVH LTR ERV1 3140 3993 -3720 * 4095 148 0 1 chr4 12810426 12811089 -189517258 + HERVH LTR ERV1 4488 5149 -2564 1254 148 19 0 chr4 12811090 12811306 -189517041 + HERVH LTR ERV1 5600 5819 -1894 2315 90 45 16 chr4 12811306 12811685 -189516662 + HERVH LTR ERV1 7324 7713 0 2544 72 130 12 chr4 12811685 12812086 -189516261 + LTR7 LTR ERV1 1 448 -2 341 284 35 71 chr4 12812330 12812471 -189515876 + MIR SINE MIR 6 141 -121 257 341 24 35 chr4 12813352 12813522 -189514825 - MIR SINE MIR -65 197 30 2223 175 44 5 chr4 12813683 12814095 -189514252 + MSTA LTR MaLR 1 428 0 21 0 0 0 chr4 12814143 12814164 -189514183 + AT_rich Low_complexity Low_complexity 1 21 0 2265 110 0 3 chr4 12814583 12814892 -189513455 - AluSc SINE Alu 0 309 2 23 54 0 0 chr4 12814894 12814931 -189513416 + AT_rich Low_complexity Low_complexity 1 37 0 204 338 65 19 chr4 12815540 12815694 -189512653 + L2 LINE L2 2153 2313 -1001 201 39 0 0 chr4 12816726 12816752 -189511595 + (CA)n Simple_repeat Simple_repeat 1 26 0 1781 169 51 37 chr4 12816946 12817491 -189510856 - MLT2A2 LTR ERVL 0 554 1 256 239 34 34 chr4 12817613 12817701 -189510646 + MIR SINE MIR 75 162 -100 570 321 101 25 chr4 12817742 12818097 -189510250 + L2 LINE L2 2007 2388 -926 422 354 25 22 chr4 12818097 12818371 -189509976 + L2 LINE L2 2505 2779 -535 296 296 65 19 chr4 12819808 12819916 -189508431 - MIR SINE MIR -27 235 123 290 178 178 0 chr4 12821278 12821385 -189506962 - L1MB4 LINE L1 -6 6174 6049 233 342 40 59 chr4 12821386 12821588 -189506759 + L2 LINE L2 2702 2899 -415 194 309 0 0 chr4 12821710 12821765 -189506582 - MIR SINE MIR -118 144 90 214 303 57 33 chr4 12871994 12872116 -189456231 + MIR SINE MIR 47 171 -91 22 35 0 0 chr4 12872376 12872405 -189455942 + AT_rich Low_complexity Low_complexity 1 29 0 184 253 36 60 chr4 12872516 12872599 -189455748 - MIR SINE MIR -77 185 105 1955 112 87 0 chr4 12873671 12873957 -189454390 - AluSq SINE Alu -2 311 1 373 284 103 9 chr4 12874039 12874155 -189454192 + L2 LINE L2 3138 3264 -8 1683 143 84 42 chr4 12874729 12875085 -189453262 - THE1C LTR MaLR -4 371 1 192 77 0 0 chr4 12875122 12875148 -189453199 + (T)n Simple_repeat Simple_repeat 1 26 0 893 333 67 12 chr4 12876322 12876739 -189451608 - HERV16 LTR ERVL -4219 777 338 779 355 35 10 chr4 12876865 12877259 -189451088 + HERV16 LTR ERVL 2541 2944 -2052 1514 268 53 46 chr4 12877751 12878868 -189449479 + L1MEc LINE L1 1559 2650 -3565 2159 110 0 3 chr4 12878990 12879289 -189449058 - AluY SINE Alu -13 298 1 831 233 65 4 chr4 12879290 12879522 -189448825 + L1M4 LINE L1 4531 4776 -1370 1459 79 5 0 chr4 12879647 12879837 -189448510 + AluY SINE Alu 115 305 -6 280 364 45 0 chr4 12879880 12880012 -189448335 - L2 LINE L2 -1 3271 3134 519 33 0 0 chr4 12880231 12880292 -189448055 - THE1C LTR MaLR -46 329 269 1948 281 74 42 chr4 12880294 12881323 -189447024 + L1MEc LINE L1 407 1468 -5139 392 340 65 56 chr4 12881325 12881663 -189446684 + L1MEc LINE L1 1285 1625 -4803 22 0 0 0 chr4 12881663 12881685 -189446662 + AT_rich Low_complexity Low_complexity 1 22 0 3995 79 2 9 chr4 12882515 12883060 -189445287 + L1PA10 LINE L1 5622 6162 -6 335 252 200 0 chr4 12883122 12883237 -189445110 + MIR SINE MIR 47 184 -78 182 250 23 0 chr4 12883255 12883299 -189445048 - MIR SINE MIR -13 249 205 345 288 72 40 chr4 12883397 12883522 -189444825 - MIR SINE MIR -119 143 15 429 337 29 12 chr4 12883630 12883802 -189444545 + MIR3 SINE MIR 30 204 -4 403 333 115 26 chr4 12884467 12884701 -189443646 + LTR16C LTR ERVL 80 334 -157 2184 101 10 10 chr4 12884703 12885011 -189443336 - AluY SINE Alu -3 308 1 266 227 121 0 chr4 12885049 12885115 -189443232 + LTR16B LTR ERVL 1 74 -390 22 0 0 0 chr4 12885121 12885143 -189443204 + AT_rich Low_complexity Low_complexity 1 22 0 3068 160 13 0 chr4 12885143 12885680 -189442667 - L1PA16 LINE L1 -1 6165 5622 306 246 132 0 chr4 12885985 12886099 -189442248 + L1MEc LINE L1 1935 2063 -4363 21 57 0 0 chr4 12886189 12886224 -189442123 + AT_rich Low_complexity Low_complexity 1 35 0 393 267 32 43 chr4 12886664 12886851 -189441496 - L1ME LINE L1 -363 5758 5574 501 289 166 5 chr4 12888593 12888804 -189439543 + L2 LINE L2 2658 2902 -412 971 234 67 60 chr4 12888804 12889086 -189439261 + MLT2B3 LTR ERVL 270 553 -1 190 252 79 94 chr4 12889616 12889666 -189438681 - MIR SINE MIR -21 241 192 869 262 18 22 chr4 12889666 12889891 -189438456 - MER58A DNA MER1_type 0 224 1 190 252 79 94 chr4 12889891 12889967 -189438380 - MIR SINE MIR -70 192 117 1131 206 73 15 chr4 12891546 12891818 -189436529 + MLT1A2 LTR MaLR 71 358 -16 330 291 21 29 chr4 12891836 12892135 -189436212 - Charlie7 DNA MER1_type -1992 620 270 301 263 61 35 chr4 12892361 12892475 -189435872 - L1MCa LINE L1 -5101 1325 1209 240 196 36 27 chr4 12892524 12892636 -189435711 + (TA)n Simple_repeat Simple_repeat 2 114 0 47 61 0 0 chr4 12892639 12892721 -189435626 + AT_rich Low_complexity Low_complexity 1 82 0 272 265 29 0 chr4 12892830 12892932 -189435415 - L1MCa LINE L1 -5223 1384 1280 203 196 22 54 chr4 12893314 12893406 -189434941 + (TAAA)n Simple_repeat Simple_repeat 2 90 0 383 276 96 34 chr4 12893609 12893848 -189434499 + L1ME4a LINE L1 5644 5897 -224 311 345 25 8 chr4 12894008 12894127 -189434220 - MIR SINE MIR -110 152 32 352 122 0 0 chr4 12894280 12894329 -189434018 + MLT1A2 LTR MaLR 1 49 -325 378 0 0 0 chr4 12896205 12896247 -189432100 + (TG)n Simple_repeat Simple_repeat 2 43 0 1389 183 28 0 chr4 12896677 12896928 -189431419 - Tigger3(Golem) DNA MER2_type -1 3028 2771 696 241 7 0 chr4 12896926 12897063 -189431284 - Tigger3(Golem) DNA MER2_type -2888 141 4 * 26 64 0 0 chr4 12898219 12898266 -189430081 + AT_rich Low_complexity Low_complexity 1 47 0 703 284 41 9 chr4 12898270 12898488 -189429859 - MIR SINE MIR -3 259 35 1178 245 23 89 chr4 12898514 12898996 -189429351 + LTR40a LTR ERVL 5 454 -65 7485 208 28 48 chr4 12901056 12903284 -189425063 + L1PA10 LINE L1 8 2190 -4271 1724 162 39 33 chr4 12903289 12903623 -189424724 + THE1B LTR MaLR 1 336 -28 293 35 0 0 chr4 12903628 12903673 -189424674 - L1PA3 LINE L1 -3 6152 6108 20145 140 14 8 chr4 12903698 12907982 -189420365 + L1PA10 LINE L1 2191 6483 0 222 198 0 66 chr4 12908056 12908147 -189420200 + (TA)n Simple_repeat Simple_repeat 1 85 0 210 156 0 0 chr4 12908172 12908217 -189420130 + (CA)n Simple_repeat Simple_repeat 2 46 0 1267 231 144 32 chr4 12908222 12908568 -189419779 - MLT2B1 LTR ERVL -69 451 67 2298 137 28 17 chr4 12908578 12908936 -189419411 - THE1B LTR MaLR 0 364 3 2187 129 42 28 chr4 12909124 12909288 -189419059 - THE1B LTR MaLR -2 362 202 207 0 0 0 chr4 12909288 12909311 -189419036 + (GA)n Simple_repeat Simple_repeat 2 24 0 2187 129 42 28 chr4 12909311 12909503 -189418844 - THE1B LTR MaLR -162 202 1 732 290 100 48 chr4 12909518 12909959 -189418388 + LTR16B LTR ERVL 1 464 0 280 288 85 79 chr4 12909959 12910136 -189418211 - MIR SINE MIR -77 185 8 345 313 9 17 chr4 12910182 12910297 -189418050 + L1MEd LINE L1 948 1061 -5058 2262 97 0 3 chr4 12910391 12910690 -189417657 - AluY SINE Alu -13 298 1 670 221 39 25 chr4 12911467 12911671 -189416676 - L1MB8 LINE L1 -1 6177 5971 198 171 0 0 chr4 12912127 12912168 -189416179 + (TTA)n Simple_repeat Simple_repeat 2 42 0 1020 218 14 9 chr4 12912761 12912977 -189415370 + MER20 DNA MER1_type 2 218 -1 1024 258 72 39 chr4 12913037 12913398 -189414949 + MLT1F LTR MaLR 170 542 0 452 304 88 44 chr4 12915109 12915405 -189412942 + MLT1I LTR MaLR 82 390 -19 180 0 0 0 chr4 12915519 12915539 -189412808 + (CA)n Simple_repeat Simple_repeat 1 20 0 3573 204 20 34 chr4 12916274 12916411 -189411936 - L1MB7 LINE L1 -28 6156 6019 2077 134 3 3 chr4 12916411 12916716 -189411631 + AluSx SINE Alu 1 305 -7 3573 204 20 34 chr4 12916716 12917457 -189410890 - L1MB7 LINE L1 -165 6019 5290 571 195 32 8 chr4 12917467 12917590 -189410757 - L1MC1 LINE L1 0 6333 6208 28 0 0 0 chr4 12918111 12918139 -189410208 + AT_rich Low_complexity Low_complexity 1 28 0 337 235 34 0 chr4 12918714 12918833 -189409514 + GA-rich Low_complexity Low_complexity 3 125 0 2402 138 11 0 chr4 12919451 12919822 -189408525 - THE1C LTR MaLR 0 375 1 9763 133 29 10 chr4 12919822 12921373 -189406974 - THE1C-int LTR MaLR 0 1580 1 2411 122 8 36 chr4 12921373 12921759 -189406588 - THE1C LTR MaLR 0 375 1 776 259 62 0 chr4 12921804 12922047 -189406300 - MIR SINE MIR 0 262 5 1860 170 21 42 chr4 12922545 12922734 -189405613 + THE1C LTR MaLR 1 179 -196 1880 122 42 0 chr4 12922734 12923020 -189405327 - AluSg SINE Alu -12 298 1 1860 170 21 42 chr4 12923020 12923213 -189405134 + THE1C LTR MaLR 179 375 0 217 292 0 31 chr4 12923310 12923375 -189404972 + MIR SINE MIR 20 82 -180 241 254 32 16 chr4 12923462 12923525 -189404822 + MIR SINE MIR 99 162 -100 494 354 59 14 chr4 12924851 12925340 -189403007 - L1MB8 LINE L1 -339 5823 5313 204 135 0 0 chr4 12925434 12925471 -189402876 + (A)n Simple_repeat Simple_repeat 1 37 0 287 231 82 30 chr4 12926082 12926216 -189402131 + L1M4 LINE L1 3790 3930 -2216 7811 24 0 0 chr4 12926232 12927918 -189400429 - L1PA2 LINE L1 0 6155 4470 3811 30 17 0 chr4 12928018 12928480 -189399867 - L1PA2 LINE L1 -1836 4310 3841 242 306 20 10 chr4 12928480 12928578 -189399769 + L1M4 LINE L1 3918 4016 -2130 5136 220 26 7 chr4 12928606 12930172 -189398175 - L1MC1 LINE L1 -18 6315 4724 1497 191 55 33 chr4 12930881 12931248 -189397099 + THE1C LTR MaLR 1 375 0 9292 135 22 33 chr4 12931251 12932846 -189395501 + THE1C-int LTR MaLR 4 1580 0 1537 194 88 12 chr4 12932846 12933030 -189395317 + THE1C LTR MaLR 1 170 -205 234 0 0 0 chr4 12933030 12933056 -189395291 + (TC)n Simple_repeat Simple_repeat 1 26 0 1537 194 88 12 chr4 12933056 12933212 -189395135 + THE1C LTR MaLR 170 367 -8 378 0 0 0 chr4 12933880 12933922 -189394425 + (TA)n Simple_repeat Simple_repeat 2 43 0 192 243 100 29 chr4 12934096 12934166 -189394181 + MIR SINE MIR 35 109 -99 328 287 132 8 chr4 12935029 12935158 -189393189 + L2 LINE L2 2554 2698 -616 249 159 0 0 chr4 12936729 12936773 -189391574 + CT-rich Low_complexity Low_complexity 2 45 0 21 0 0 0 chr4 12936932 12936953 -189391394 + AT_rich Low_complexity Low_complexity 1 21 0 2167 107 17 0 chr4 12937155 12937455 -189390892 - AluSc SINE Alu -4 305 1 1331 306 8 3 chr4 12937674 12938059 -189390288 - MER69 DNA AcHobo -783 443 57 439 304 15 15 chr4 12939031 12939166 -189389181 + MIR SINE MIR 17 151 -111 1366 248 34 6 chr4 12939201 12939556 -189388791 + MLT1A1 LTR MaLR 1 365 0 182 286 0 0 chr4 12939567 12939616 -189388731 + MIR SINE MIR 166 214 -48 210 171 0 0 chr4 12939643 12939684 -189388663 + (CATA)n Simple_repeat Simple_repeat 3 43 0 482 277 79 39 chr4 12940540 12940828 -189387519 - MLT1H LTR MaLR -120 289 23 188 229 83 0 chr4 12940993 12941041 -189387306 + L2 LINE L2 3261 3312 -1 24 0 0 0 chr4 12941571 12941595 -189386752 + AT_rich Low_complexity Low_complexity 1 24 0 226 133 0 0 chr4 12941985 12942015 -189386332 + Tigger3(Golem) DNA MER2_type 3007 3036 0 2278 118 9 3 chr4 12943018 12943353 -189384994 + THE1C LTR MaLR 1 360 -36 292 385 42 53 chr4 12943557 12943758 -189384589 - L2 LINE L2 -251 3062 2863 2087 175 44 7 chr4 12943758 12944169 -189384178 - MSTB LTR MaLR 0 426 1 292 385 42 53 chr4 12944169 12944229 -189384118 - L2 LINE L2 -450 2863 2804 193 395 37 9 chr4 12944604 12944713 -189383634 - L2 LINE L2 -5 3267 3156 1262 244 50 17 chr4 12948051 12948647 -189379700 + L1ME1 LINE L1 4865 5483 -683 1152 246 41 60 chr4 12948652 12949139 -189379208 + L1ME1 LINE L1 5683 6160 -6 437 288 151 58 chr4 12949704 12950044 -189378303 + L1ME LINE L1 5347 5727 -394 1989 117 28 3 chr4 12950044 12950334 -189378013 - AluSq SINE Alu -16 297 1 437 288 151 58 chr4 12950334 12950371 -189377976 + L1ME LINE L1 5727 5759 -362 210 286 71 0 chr4 12952074 12952158 -189376189 + MIR SINE MIR 74 163 -99 633 249 108 90 chr4 12952771 12953413 -189374934 - HAL1 LINE L1 0 2507 1855 3311 129 6 9 chr4 12953466 12953994 -189374353 - L1PA13 LINE L1 -2 6812 6287 18221 204 17 12 chr4 12953997 12958506 -189369841 - L1PA13 LINE L1 -858 5939 1396 4620 261 107 3 chr4 12958509 12959649 -189368698 - L1PA13 LINE L1 -5529 1258 1 308 244 0 51 chr4 12959652 12959730 -189368617 - HAL1 LINE L1 -710 1797 1724 2208 217 24 89 chr4 12959731 12960316 -189368031 + MLT2B3 LTR ERVL 8 554 0 357 333 22 14 chr4 12960917 12961055 -189367292 + MIR SINE MIR 77 215 -47 471 261 15 15 chr4 12961948 12962082 -189366265 + L2 LINE L2 2326 2459 -855 2083 120 65 29 chr4 12962082 12962433 -189365914 + THE1B LTR MaLR 1 364 0 232 224 41 0 chr4 12962456 12962505 -189365842 - AluJ/monomer SINE Alu -12 290 240 350 276 92 11 chr4 12962805 12962990 -189365357 - L1ME4a LINE L1 -214 5907 5708 331 279 69 20 chr4 12964954 12965158 -189363189 + L1ME4a LINE L1 5678 5891 -230 449 271 71 29 chr4 12965240 12965410 -189362937 - MER5A DNA MER1_type -6 183 7 239 261 37 15 chr4 12965430 12965564 -189362783 + (TA)n Simple_repeat Simple_repeat 2 138 0 315 352 56 12 chr4 12966248 12966410 -189361937 + MIR3 SINE MIR 4 172 -36 269 308 39 0 chr4 12967287 12967365 -189360982 + MIR SINE MIR 34 114 -148 26 30 0 0 chr4 12967750 12967783 -189360564 + AT_rich Low_complexity Low_complexity 1 33 0 333 198 0 0 chr4 12967886 12967967 -189360380 + (TA)n Simple_repeat Simple_repeat 2 82 0 210 332 32 63 chr4 12968056 12968246 -189360101 - L3 LINE CR1 -263 1314 1131 892 219 63 0 chr4 12968535 12968740 -189359607 - MER58A DNA MER1_type -1 223 6 878 201 7 0 chr4 12968812 12968961 -189359386 - FRAM SINE Alu -16 150 1 315 122 0 0 chr4 12969023 12969072 -189359275 + (TC)n Simple_repeat Simple_repeat 1 49 0 1414 213 75 24 chr4 12969400 12969776 -189358571 - LTR52 LTR ERVL -19 402 8 22 0 0 0 chr4 12970538 12970560 -189357787 + AT_rich Low_complexity Low_complexity 1 22 0 273 339 65 48 chr4 12971578 12971764 -189356583 - MIR3 SINE MIR -6 202 14 22 35 0 0 chr4 12971896 12971925 -189356422 + AT_rich Low_complexity Low_complexity 1 29 0 611 316 68 12 chr4 12973668 12974081 -189354266 + MLT1H LTR MaLR 84 549 0 2105 172 53 7 chr4 12974162 12974575 -189353772 - MSTB1 LTR MaLR 0 432 1 196 396 34 22 chr4 12975349 12975563 -189352784 - L2 LINE L2 -261 3011 2797 210 361 19 28 chr4 12976448 12976556 -189351791 - MIR3 SINE MIR -96 112 6 836 234 83 19 chr4 12976635 12976840 -189351507 - MER20 DNA MER1_type -1 218 1 1818 158 13 3 chr4 12976841 12977139 -189351208 + AluJo SINE Alu 1 301 -11 278 359 77 24 chr4 12978063 12978233 -189350114 - MIR SINE MIR -71 191 13 296 323 105 15 chr4 12979647 12979780 -189348567 + MIR3 SINE MIR 19 163 -45 270 411 43 12 chr4 12980758 12980921 -189347426 - MIR SINE MIR -75 187 20 1051 208 23 37 chr4 12981176 12981392 -189346955 + MER20 DNA MER1_type 7 219 0 431 317 32 37 chr4 12981407 12981653 -189346694 + L1M4 LINE L1 4352 4596 -1550 1114 291 112 58 chr4 12981721 12982516 -189345831 - L2 LINE L2 -473 2841 2004 22 0 0 0 chr4 12982574 12982596 -189345751 + AT_rich Low_complexity Low_complexity 1 22 0 26 64 0 0 chr4 12982849 12982896 -189345451 + AT_rich Low_complexity Low_complexity 1 47 0 775 209 147 0 chr4 12983988 12984151 -189344196 + MER5A DNA MER1_type 3 189 0 800 235 76 46 chr4 12985939 12986177 -189342170 - MIR SINE MIR 0 262 18 237 156 22 0 chr4 12986188 12986233 -189342114 + MIR SINE MIR 128 173 -89 308 242 111 10 chr4 12986827 12986926 -189341421 - MIR SINE MIR -32 230 122 1521 142 7 37 chr4 12988129 12988562 -189339785 + pTR5 LTR ERV1 742 1210 -1228 208 317 135 48 chr4 12990004 12990212 -189338135 + L2 LINE L2 2633 2858 -456 4320 89 26 0 chr4 12990406 12991011 -189337336 + L1PA10 LINE L1 5546 6166 -2 509 293 30 23 chr4 12991215 12991348 -189336999 + L2 LINE L2 3139 3272 0 589 318 24 61 chr4 12991616 12991946 -189336401 + MLT1K LTR MaLR 254 571 -17 195 286 0 0 chr4 12992020 12992062 -189336285 + L2 LINE L2 3227 3268 -4 204 296 165 17 chr4 12992488 12992603 -189335744 + MIR SINE MIR 125 256 -6 1049 136 6 0 chr4 12992907 12993084 -189335263 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 254 37 111 0 chr4 12993084 12993138 -189335209 + CT-rich Low_complexity Low_complexity 2 61 0 4121 85 9 7 chr4 12993271 12993824 -189334523 - MER41A LTR ERV1 0 554 1 185 244 267 0 chr4 12994633 12994719 -189333628 - L2 LINE L2 -2 3311 3203 292 333 69 39 chr4 12995136 12995340 -189333007 + LTR16A LTR ERVL 7 216 -234 469 257 33 76 chr4 12995376 12995508 -189332839 + HERV16 LTR ERVL 3365 3501 -1495 2645 147 14 2 chr4 12995508 12995746 -189332601 - MSTA LTR MaLR 0 428 181 2238 104 0 7 chr4 12995746 12996044 -189332303 - AluSx SINE Alu -5 307 12 2645 147 14 2 chr4 12996044 12996228 -189332119 - MSTA LTR MaLR -247 181 1 469 257 33 76 chr4 12996228 12996399 -189331948 + HERV16 LTR ERVL 3501 3655 -1341 417 317 21 0 chr4 12997744 12997886 -189330461 + HERV16 LTR ERVL 4727 4871 -893 373 284 99 25 chr4 12999518 12999680 -189328667 - LTR16C LTR ERVL -26 465 292 1766 172 3 46 chr4 13000342 13000659 -189327688 - L1P4 LINE L1 -532 5634 5305 932 148 6 0 chr4 13000659 13000821 -189327526 - L1MA2 LINE L1 -1 6303 6141 1766 172 3 46 chr4 13000821 13001055 -189327292 - L1P4 LINE L1 -861 5305 5062 2339 117 0 0 chr4 13001055 13001364 -189326983 - AluSg SINE Alu -1 309 1 1766 172 3 46 chr4 13001364 13001875 -189326472 - L1P4 LINE L1 -1104 5062 4545 2345 87 3 37 chr4 13001889 13002211 -189326136 - AluY SINE Alu 0 311 1 822 256 113 39 chr4 13002224 13002588 -189325759 + LTR16B LTR ERVL 74 464 0 465 221 66 0 chr4 13002588 13002708 -189325639 + LTR16C LTR ERVL 362 489 -2 186 43 0 0 chr4 13002759 13002782 -189325565 + (CA)n Simple_repeat Simple_repeat 2 24 0 1782 161 143 13 chr4 13003815 13004194 -189324153 - MSTA LTR MaLR 0 428 1 568 244 72 81 chr4 13005613 13005834 -189322513 + MER20 DNA MER1_type 1 219 0 203 281 250 6 chr4 13005930 13006094 -189322253 - MIR SINE MIR -19 243 40 334 316 103 22 chr4 13006842 13006978 -189321369 + L2 LINE L2 3121 3267 -5 323 323 85 18 chr4 13007705 13007869 -189320478 + L2 LINE L2 3095 3269 -3 183 129 0 0 chr4 13007877 13007908 -189320439 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 192 225 0 0 chr4 13008009 13008049 -189320298 + L2 LINE L2 3217 3256 -16 21 0 0 0 chr4 13008141 13008162 -189320185 + AT_rich Low_complexity Low_complexity 1 21 0 325 300 59 35 chr4 13008536 13008706 -189319641 - MIR SINE MIR -6 256 83 497 254 87 7 chr4 13008758 13008896 -189319451 - MER63 DNA MER1_type -287 775 1 395 285 51 7 chr4 13009402 13009539 -189318808 - L2 LINE L2 0 3313 3171 * 708 258 56 28 chr4 13009535 13009787 -189318560 + MIR SINE MIR 5 262 0 280 374 99 11 chr4 13009851 13010113 -189318234 - L2 LINE L2 -223 3090 2806 519 60 0 0 chr4 13010167 13010234 -189318113 + (TTCC)n Simple_repeat Simple_repeat 4 70 0 260 274 57 89 chr4 13011298 13011355 -189316992 - MIR SINE MIR -74 188 131 3914 96 3 12 chr4 13011355 13011379 -189316968 - L1PA13 LINE L1 -11 6152 6129 1847 132 36 93 chr4 13011379 13011765 -189316582 - THE1B LTR MaLR 0 364 1 3914 96 3 12 chr4 13011765 13012305 -189316042 - L1PA13 LINE L1 -34 6129 5593 260 274 57 89 chr4 13012305 13012404 -189315943 - MIR SINE MIR -131 131 37 21 0 0 0 chr4 13012624 13012645 -189315702 + AT_rich Low_complexity Low_complexity 1 21 0 209 282 121 24 chr4 13012789 13012913 -189315434 + MIR SINE MIR 114 249 -13 976 178 0 12 chr4 13012981 13013144 -189315203 - FRAM SINE Alu -18 158 1 24 0 0 0 chr4 13014851 13014875 -189313472 + AT_rich Low_complexity Low_complexity 1 24 0 232 224 30 0 chr4 13015419 13015486 -189312861 + MER116 DNA Mariner 1 69 -11 903 206 225 39 chr4 13016993 13017353 -189310994 - MSTC LTR MaLR -1 427 1 2356 145 3 6 chr4 13017543 13017908 -189310439 + THE1B LTR MaLR 1 364 0 28 0 0 0 chr4 13017928 13017956 -189310391 + AT_rich Low_complexity Low_complexity 1 28 0 520 328 68 28 chr4 13018020 13018270 -189310077 - MIR SINE MIR -1 261 2 1442 209 59 0 chr4 13018364 13018799 -189309548 + MLT2B1 LTR ERVL 2 513 -2 239 336 36 7 chr4 13019260 13019400 -189308947 + L3b LINE CR1 1117 1260 -323 292 335 112 29 chr4 13020040 13020282 -189308065 + MLT1I LTR MaLR 99 360 -49 543 160 22 28 chr4 13020379 13020560 -189307787 + (TA)n Simple_repeat Simple_repeat 1 180 0 709 149 16 32 chr4 13020601 13020902 -189307445 + (TA)n Simple_repeat Simple_repeat 1 296 0 242 222 0 25 chr4 13020928 13021009 -189307338 + (TATATG)n Simple_repeat Simple_repeat 6 84 0 380 274 143 34 chr4 13021214 13021389 -189306958 + MIR SINE MIR 48 241 -21 1819 134 52 71 chr4 13021766 13022147 -189306200 + THE1C LTR MaLR 2 375 0 925 201 12 85 chr4 13022650 13022818 -189305529 - AluJo SINE Alu -17 295 151 2136 106 10 3 chr4 13022818 13023111 -189305236 - AluSq SINE Alu -18 295 1 925 201 12 85 chr4 13023111 13023201 -189305146 - AluJo SINE Alu -161 151 56 2004 185 9 0 chr4 13023215 13023545 -189304802 + MER61A LTR ERV1 11 343 0 280 155 0 86 chr4 13023545 13023603 -189304744 - AluJo SINE Alu -253 55 3 811 270 81 46 chr4 13023777 13024122 -189304225 - MLT1I LTR MaLR -40 369 13 25 0 0 0 chr4 13024261 13024286 -189304061 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr4 13024585 13024608 -189303739 + AT_rich Low_complexity Low_complexity 1 23 0 10042 30 2 0 chr4 13025215 13027187 -189301160 + L1PA3 LINE L1 4182 6155 0 337 307 34 58 chr4 13027625 13027830 -189300517 + MIR SINE MIR 13 212 -50 215 197 33 0 chr4 13027973 13028034 -189300313 + (TA)n Simple_repeat Simple_repeat 1 63 0 21 100 0 0 chr4 13028109 13028179 -189300168 + AT_rich Low_complexity Low_complexity 1 70 0 1641 234 84 25 chr4 13028566 13029041 -189299306 + MLT1D LTR MaLR 3 505 0 241 370 22 0 chr4 13029365 13029457 -189298890 + L2 LINE L2 3173 3266 -6 1396 263 36 14 chr4 13029651 13030070 -189298277 + MLT1C LTR MaLR 40 467 0 276 29 0 0 chr4 13030366 13030400 -189297947 + MLT2A1 LTR ERVL 411 444 0 1099 92 0 6 chr4 13030573 13030736 -189297611 - L1PA12 LINE L1 -681 5482 5321 4329 70 29 84 chr4 13030736 13031459 -189296888 + L1PA12 LINE L1 5482 6165 -3 208 313 104 77 chr4 13031764 13031946 -189296401 + L2 LINE L2 3086 3272 0 2719 138 7 14 chr4 13033279 13033708 -189294639 + MSTA LTR MaLR 1 426 -2 252 127 0 133 chr4 13034959 13035019 -189293328 - AluSp SINE Alu -133 170 123 536 280 70 0 chr4 13035206 13035363 -189292984 - MER5A DNA MER1_type -21 168 1 315 73 0 0 chr4 13036038 13036079 -189292268 - L1PA8A LINE L1 -509 5622 5582 1762 115 8 0 chr4 13036079 13036336 -189292011 + L1PA10 LINE L1 5905 6167 -1 1860 187 18 33 chr4 13036624 13036895 -189291452 - MLT1B LTR MaLR 0 390 125 1475 213 33 35 chr4 13036895 13037261 -189291086 + MLT1A1 LTR MaLR 1 365 0 1860 187 18 33 chr4 13037261 13037385 -189290962 - MLT1B LTR MaLR -265 125 1 28 0 0 0 chr4 13037422 13037450 -189290897 + AT_rich Low_complexity Low_complexity 1 28 0 322 280 186 38 chr4 13037451 13037715 -189290632 - L2 LINE L2 -5 3308 3006 2232 124 8 153 chr4 13037728 13038250 -189290097 - Tigger2 DNA MER2_type 0 2718 2273 399 152 0 15 chr4 13038241 13038307 -189290040 - Tigger2 DNA MER2_type -2650 68 4 * 473 330 53 13 chr4 13038413 13038640 -189289707 - MIR SINE MIR -25 237 2 334 287 183 12 chr4 13038714 13038878 -189289469 + MIR SINE MIR 56 247 -15 338 236 39 0 chr4 13040245 13040343 -189288004 + MLT1H LTR MaLR 460 593 -2 267 293 61 0 chr4 13041039 13041121 -189287226 + HERV16-A1 LTR ERVL 2 88 -4908 713 191 64 38 chr4 13041152 13041387 -189286960 + L1MEc LINE L1 2093 2333 -4063 369 313 19 6 chr4 13041394 13041554 -189286793 - L1MEc LINE L1 -5631 765 604 770 272 142 30 chr4 13041700 13042038 -189286309 - L1MEc LINE L1 -5984 412 37 575 502 154 4 chr4 13042325 13042578 -189285769 + AluJb SINE Alu 1 291 -11 1445 268 56 39 chr4 13042591 13043125 -189285222 + MER119 DNA MER1_type 40 582 -1 282 160 0 0 chr4 13043140 13043190 -189285157 + (CA)n Simple_repeat Simple_repeat 1 50 0 365 344 47 0 chr4 13043936 13044064 -189284283 + MIR SINE MIR 48 181 -81 527 273 111 30 chr4 13044417 13044615 -189283732 - MER58C DNA MER1_type 0 215 2 787 325 8 8 chr4 13044730 13044979 -189283368 - MIR SINE MIR -3 259 11 427 228 89 24 chr4 13046707 13046830 -189281517 - L1ME LINE L1 -307 5814 5684 1224 229 36 63 chr4 13048206 13048442 -189279905 - MLT1A1 LTR MaLR 0 365 139 2068 137 73 14 chr4 13048442 13048786 -189279561 + THE1B LTR MaLR 1 364 0 1224 229 36 63 chr4 13048786 13048881 -189279466 - MLT1A1 LTR MaLR -226 139 43 383 242 6 25 chr4 13049401 13049562 -189278785 + GA-rich Low_complexity Low_complexity 3 160 0 1885 192 6 35 chr4 13049571 13050068 -189278279 - L1MB8 LINE L1 -140 6038 5492 526 229 25 104 chr4 13050490 13050730 -189277617 - L1M4b LINE L1 -5921 938 718 719 246 43 27 chr4 13050788 13051034 -189277313 - MER77 LTR ERV1 -9 596 375 2113 173 47 0 chr4 13051556 13051921 -189276426 - MSTB LTR MaLR 0 426 45 2361 73 0 58 chr4 13052904 13053234 -189275113 - AluY SINE Alu 0 311 1 21 36 0 0 chr4 13053459 13053487 -189274860 + AT_rich Low_complexity Low_complexity 1 28 0 2044 113 22 0 chr4 13053487 13053761 -189274586 - AluSx SINE Alu -24 288 9 1821 171 7 0 chr4 13053771 13054063 -189274284 - AluSx SINE Alu -18 294 1 1133 277 105 25 chr4 13054064 13054548 -189273799 + MER69 DNA AcHobo 278 800 -426 225 254 0 0 chr4 13054551 13054610 -189273737 + MER69 DNA AcHobo 2018 2076 -450 437 69 85 24 chr4 13054610 13054857 -189273490 + (TA)n Simple_repeat Simple_repeat 1 262 0 1651 196 45 39 chr4 13055036 13055393 -189272954 + MLT1A2 LTR MaLR 1 359 -15 219 295 124 55 chr4 13055747 13055907 -189272440 + MIR SINE MIR 26 206 -56 1849 187 53 11 chr4 13055907 13056281 -189272066 + MLT1B LTR MaLR 1 390 0 219 295 124 55 chr4 13056281 13056337 -189272010 + MIR SINE MIR 206 257 -5 25 65 0 0 chr4 13056348 13056394 -189271953 + AT_rich Low_complexity Low_complexity 1 46 0 210 356 0 0 chr4 13057010 13057069 -189271278 - MIR SINE MIR -184 78 20 438 329 47 6 chr4 13057338 13057508 -189270839 + MIR SINE MIR 13 189 -73 317 301 19 10 chr4 13058455 13058558 -189269789 - MER5A DNA MER1_type -6 183 80 362 135 0 27 chr4 13058781 13058855 -189269492 - MER92A LTR ERV1 0 412 341 294 247 12 12 chr4 13058857 13058938 -189269409 - MER92C LTR ERV1 -473 81 1 211 364 190 8 chr4 13058962 13059083 -189269264 - L2 LINE L2 -2 3270 3128 1400 173 58 18 chr4 13059490 13059768 -189268579 + AluJo SINE Alu 1 289 -23 412 282 38 8 chr4 13059818 13059949 -189268398 + MER63 DNA MER1_type 4 764 -298 1791 129 24 0 chr4 13059955 13060203 -189268144 + AluSg SINE Alu 1 254 -56 1260 119 0 0 chr4 13060203 13060380 -189267967 + AluY SINE Alu 132 308 -3 276 111 0 22 chr4 13060786 13060831 -189267516 + MSTB2 LTR MaLR 1 44 -352 1115 250 34 17 chr4 13061109 13061405 -189266942 + MSTB2 LTR MaLR 157 457 0 186 258 16 32 chr4 13061438 13061500 -189266847 - L2 LINE L2 -556 2758 2698 388 136 0 2 chr4 13061656 13061892 -189266455 + AluJb SINE Alu 3 294 -8 21 0 0 0 chr4 13062841 13062862 -189265485 + AT_rich Low_complexity Low_complexity 1 21 0 1314 323 38 30 chr4 13065606 13066364 -189261983 + L1ME2 LINE L1 11 774 -5296 1674 262 32 21 chr4 13066380 13067007 -189261340 + L1ME2 LINE L1 4387 5020 -1060 522 311 165 20 chr4 13067007 13067358 -189260989 + MER70-int LTR ERVL 2344 2745 -2278 1432 304 29 45 chr4 13067742 13068409 -189259938 + MER70-int LTR ERVL 2818 3473 -1550 2076 239 53 29 chr4 13069838 13070715 -189257632 + L1ME2 LINE L1 5057 5957 -141 229 259 25 25 chr4 13070717 13070798 -189257549 + L1ME2 LINE L1 6008 6088 -10 229 203 101 0 chr4 13070840 13070909 -189257438 + L1MC4 LINE L1 7829 7904 -138 529 227 76 11 chr4 13070985 13071272 -189257075 - MER93b LTR ERV1 0 373 39 1529 186 33 19 chr4 13071526 13071833 -189256514 - AluJb SINE Alu -1 311 1 1171 211 24 124 chr4 13072281 13072693 -189255654 + MLT1A2 LTR MaLR 4 374 0 222 337 105 0 chr4 13074795 13074890 -189253457 - MIR SINE MIR -7 255 151 351 357 60 36 chr4 13074925 13075093 -189253254 - MER5A DNA MER1_type -1 188 17 330 297 35 83 chr4 13075178 13075323 -189253024 - MER5A DNA MER1_type -16 167 25 180 348 34 11 chr4 13075338 13075427 -189252920 - MIR SINE MIR -97 111 21 2448 82 26 0 chr4 13075460 13075801 -189252546 + L1PB1 LINE L1 5801 6150 -1 296 302 37 34 chr4 13076442 13076614 -189251733 + MIR SINE MIR 3 174 -64 436 312 47 24 chr4 13077527 13077697 -189250650 - MIR SINE MIR -37 225 52 22 0 0 0 chr4 13077725 13077747 -189250600 + AT_rich Low_complexity Low_complexity 1 22 0 331 283 116 51 chr4 13079118 13079411 -189248936 + L1ME4a LINE L1 5564 5875 -246 183 300 92 46 chr4 13079454 13079584 -189248763 - MIR SINE MIR -51 211 76 3001 203 31 3 chr4 13079610 13080191 -189248156 - MER77 LTR ERV1 -8 597 1 272 101 14 87 chr4 13080629 13080698 -189247649 + L1MD1 LINE L1 6178 6241 -1 198 347 88 49 chr4 13080702 13081088 -189247259 - L2 LINE L2 -425 2889 2489 2129 121 0 7 chr4 13081099 13081397 -189246950 - AluSx SINE Alu -16 296 1 671 304 137 20 chr4 13081571 13081877 -189246470 + MLT1J2 LTR MaLR 105 446 -4 243 0 0 0 chr4 13081900 13081927 -189246420 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 234 327 46 26 chr4 13083230 13083383 -189244964 + MLT1J1 LTR MaLR 159 314 -132 284 314 0 0 chr4 13083485 13083571 -189244776 - L2 LINE L2 -944 2370 2285 297 0 0 0 chr4 13083575 13083608 -189244739 + (TG)n Simple_repeat Simple_repeat 2 34 0 1353 256 86 52 chr4 13083619 13083819 -189244528 + MLT1H1 LTR MaLR 13 205 -350 2091 124 3 3 chr4 13083819 13084118 -189244229 + AluSq SINE Alu 3 301 -12 1353 256 86 52 chr4 13084118 13084322 -189244025 + MLT1H1 LTR MaLR 205 431 -124 477 265 113 27 chr4 13084322 13084507 -189243840 + MER63A DNA MER1_type 2 202 -8 * 507 237 26 0 chr4 13084501 13084615 -189243732 + MLT1H1 LTR MaLR 437 553 -2 1998 130 0 47 chr4 13085306 13085628 -189242719 + AluSx SINE Alu 1 307 -5 554 323 74 31 chr4 13085859 13086249 -189242098 + MLT1I LTR MaLR 1 407 -2 614 107 46 23 chr4 13086456 13086748 -189241599 + (TA)n Simple_repeat Simple_repeat 1 298 0 294 301 97 7 chr4 13087306 13087473 -189240874 + MIR SINE MIR 23 201 -61 23 0 0 0 chr4 13087597 13087620 -189240727 + AT_rich Low_complexity Low_complexity 1 23 0 2144 128 0 10 chr4 13088236 13088548 -189239799 - AluSq SINE Alu -4 309 1 225 0 0 0 chr4 13088549 13088574 -189239773 + (TG)n Simple_repeat Simple_repeat 2 26 0 249 332 194 28 chr4 13088576 13088865 -189239482 - L2 LINE L2 -16 3297 2961 1871 175 0 7 chr4 13089119 13089422 -189238925 + AluSx SINE Alu 1 301 -11 191 315 63 45 chr4 13089514 13089625 -189238722 + MIR SINE MIR 34 146 -62 325 280 43 60 chr4 13090135 13090303 -189238044 - MIR3 SINE MIR -65 143 5 23 0 0 0 chr4 13090703 13090726 -189237621 + AT_rich Low_complexity Low_complexity 1 23 0 252 0 0 0 chr4 13091931 13091959 -189236388 + (TTCA)n Simple_repeat Simple_repeat 2 29 0 517 211 0 44 chr4 13092299 13092413 -189235934 - MLT1J2 LTR MaLR 0 450 342 266 236 173 18 chr4 13092495 13092605 -189235742 - MLT1J1 LTR MaLR -249 197 71 2240 97 3 26 chr4 13092872 13093183 -189235164 + AluSx SINE Alu 1 304 -8 246 295 101 13 chr4 13094350 13094648 -189233699 + L1ME4a LINE L1 5794 6117 -4 27 100 0 0 chr4 13094648 13094738 -189233609 + AT_rich Low_complexity Low_complexity 1 90 0 372 77 0 0 chr4 13094896 13094948 -189233399 + (TAGA)n Simple_repeat Simple_repeat 3 54 0 24 0 0 0 chr4 13095536 13095560 -189232787 + AT_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr4 13095970 13095995 -189232352 + AT_rich Low_complexity Low_complexity 1 25 0 255 299 35 11 chr4 13096045 13096132 -189232215 - L2 LINE L2 -3 3269 3181 195 69 0 0 chr4 13096291 13096320 -189232027 + (A)n Simple_repeat Simple_repeat 1 29 0 394 296 63 0 chr4 13096518 13096660 -189231687 + MIR SINE MIR 8 158 -104 2063 132 57 34 chr4 13096957 13097306 -189231041 - THE1B LTR MaLR -7 357 1 428 306 42 47 chr4 13097307 13097500 -189230847 - MIR SINE MIR -63 199 8 197 274 14 41 chr4 13097501 13097574 -189230773 + L2 LINE L2 2679 2749 -565 287 340 160 7 chr4 13097598 13097742 -189230605 - L2 LINE L2 0 3272 3107 865 303 26 13 chr4 13097939 13098246 -189230101 + LTR16B LTR ERVL 154 464 0 198 156 0 0 chr4 13098402 13098447 -189229900 + (CA)n Simple_repeat Simple_repeat 2 46 0 2140 124 0 16 chr4 13099036 13099342 -189229005 + AluSx SINE Alu 1 301 -11 474 291 46 7 chr4 13099518 13099669 -189228678 + MIR SINE MIR 13 169 -93 21 0 0 0 chr4 13100120 13100141 -189228206 + AT_rich Low_complexity Low_complexity 1 21 0 806 269 6 0 chr4 13100380 13100555 -189227792 + MER45A DNA AcHobo 1 176 -2 189 267 33 0 chr4 13100775 13100835 -189227512 - MIR3 SINE MIR -4 204 143 244 313 48 90 chr4 13100845 13101011 -189227336 + MER5B DNA MER1_type 20 178 0 216 182 73 0 chr4 13101023 13101078 -189227269 - MIR SINE MIR -121 141 83 1452 167 72 0 chr4 13101990 13102253 -189226094 - AluJo SINE Alu -26 286 5 4684 159 35 14 chr4 13102262 13103146 -189225201 - L1MC1 LINE L1 -2 6331 5429 28 61 0 0 chr4 13103179 13103228 -189225119 + AT_rich Low_complexity Low_complexity 1 49 0 244 286 79 11 chr4 13103434 13103612 -189224735 + L1MC4a LINE L1 4487 4676 -1470 601 292 79 10 chr4 13103641 13103843 -189224504 - MIR SINE MIR -38 224 9 894 196 0 7 chr4 13103868 13104021 -189224326 + AluJb SINE Alu 134 285 -27 192 40 0 0 chr4 13104387 13104412 -189223935 + (TG)n Simple_repeat Simple_repeat 2 26 0 1277 285 48 28 chr4 13104432 13104537 -189223810 + L1MC4a LINE L1 5332 5433 -2375 1909 141 54 38 chr4 13104537 13104906 -189223441 + THE1C LTR MaLR 1 375 0 1277 285 48 28 chr4 13104906 13105344 -189223003 + L1MC4a LINE L1 5433 5886 -1922 22 0 0 0 chr4 13105451 13105473 -189222874 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chr4 13105573 13105609 -189222738 + AT_rich Low_complexity Low_complexity 1 36 0 1807 171 0 0 chr4 13105968 13106254 -189222093 + AluJo SINE Alu 1 286 -26 476 280 161 35 chr4 13106335 13106707 -189221640 - L1ME3 LINE L1 -29 6133 5715 278 275 152 7 chr4 13106802 13106940 -189221407 - MLT1L LTR MaLR -336 279 122 22 35 0 0 chr4 13107150 13107179 -189221168 + AT_rich Low_complexity Low_complexity 1 29 0 2938 73 29 20 chr4 13107250 13107659 -189220688 + L1PA6 LINE L1 5740 6152 -2 1415 128 55 0 chr4 13107674 13107892 -189220455 + MER30 DNA MER1_type 1 230 0 232 130 29 43 chr4 13107893 13107962 -189220385 - MER113 DNA MER1_type? -384 137 70 1719 308 85 27 chr4 13108161 13108184 -189220163 + L2 LINE L2 2125 2145 -1168 2359 96 0 3 chr4 13108184 13108498 -189219849 - AluSq SINE Alu 0 313 1 1719 308 85 27 chr4 13108498 13109605 -189218742 + L2 LINE L2 2145 3312 -1 860 338 108 21 chr4 13109609 13110076 -189218271 - L2 LINE L2 -60 3253 2828 5703 63 0 4 chr4 13110076 13110802 -189217545 - L1PA7 LINE L1 0 6154 5432 860 338 108 21 chr4 13110802 13111290 -189217057 - L2 LINE L2 -485 2828 2219 34 24 0 0 chr4 13111294 13111335 -189217012 + AT_rich Low_complexity Low_complexity 1 41 0 232 264 44 44 chr4 13111377 13111468 -189216879 - MIR SINE MIR -68 194 104 210 319 190 9 chr4 13111505 13111621 -189216726 - L2 LINE L2 -19 3253 3117 338 329 78 18 chr4 13113430 13113597 -189214750 + MIR SINE MIR 70 246 -16 198 301 65 11 chr4 13114179 13114272 -189214075 + L2 LINE L2 3202 3299 -14 342 0 0 0 chr4 13114342 13114380 -189213967 + (TG)n Simple_repeat Simple_repeat 2 39 0 252 217 87 122 chr4 13114542 13114644 -189213703 + MIR SINE MIR 20 103 -159 2101 111 0 7 chr4 13114644 13114923 -189213424 - AluSg SINE Alu -16 294 18 252 217 87 122 chr4 13114923 13115031 -189213316 + MIR SINE MIR 103 213 -49 42593 34 23 2 chr4 13115053 13121073 -189207274 + L1PA3 LINE L1 5 6155 0 2097 104 19 26 chr4 13121502 13121811 -189206536 - AluSg SINE Alu -3 307 1 1165 237 136 12 chr4 13122326 13122672 -189205675 + MSTD LTR MaLR 6 394 -2 207 333 161 12 chr4 13122797 13122965 -189205382 + MIR SINE MIR 3 195 -67 1306 169 35 94 chr4 13122965 13123284 -189205063 + AluJo SINE Alu 1 300 -12 418 224 28 56 chr4 13123732 13123839 -189204508 + MER58A DNA MER1_type 7 110 0 288 0 0 0 chr4 13124250 13124282 -189204065 + (TG)n Simple_repeat Simple_repeat 2 33 0 216 228 0 0 chr4 13124317 13124374 -189203973 + (TA)n Simple_repeat Simple_repeat 2 58 0 5668 162 65 23 chr4 13124376 13124584 -189203763 - Tigger3b DNA MER2_type -1798 1230 1032 2297 104 0 0 chr4 13124584 13124881 -189203466 + AluSp SINE Alu 1 297 -16 5668 162 65 23 chr4 13124881 13124960 -189203387 - Tigger3b DNA MER2_type -1996 1032 958 1731 157 112 47 chr4 13124960 13125362 -189202985 - MSTA LTR MaLR 0 428 1 5668 162 65 23 chr4 13125362 13126078 -189202269 - Tigger3b DNA MER2_type -2070 958 166 2311 125 8 19 chr4 13126078 13126446 -189201901 + THE1B LTR MaLR 1 364 0 5668 162 65 23 chr4 13126446 13126620 -189201727 - Tigger3b DNA MER2_type -2862 166 1 242 336 15 8 chr4 13126671 13126805 -189201542 - L1MEc LINE L1 -3584 2545 2411 328 302 111 5 chr4 13126877 13127066 -189201281 - L1M4 LINE L1 -3821 2325 2117 972 338 98 37 chr4 13127072 13128267 -189200080 + HAL1 LINE L1 101 1368 -1139 884 238 22 45 chr4 13128285 13128476 -189199871 + MER58A DNA MER1_type 6 193 -2227 1798 126 71 44 chr4 13128476 13128841 -189199506 - THE1C LTR MaLR 0 375 1 884 238 22 45 chr4 13128841 13128872 -189199475 + MER58A DNA MER1_type 193 223 -1 758 278 60 45 chr4 13128881 13129199 -189199148 + HAL1 LINE L1 1389 1717 -790 293 0 27 0 chr4 13129199 13129236 -189199111 + (TAA)n Simple_repeat Simple_repeat 2 39 0 758 278 60 45 chr4 13129236 13129363 -189198984 + HAL1 LINE L1 1717 1841 -666 641 304 55 39 chr4 13129445 13129902 -189198445 + HAL1 LINE L1 2037 2500 -7 831 249 170 52 chr4 13129938 13130266 -189198081 - L1ME3A LINE L1 -85 6085 5797 2366 48 0 14 chr4 13130266 13130561 -189197786 - AluY SINE Alu -20 291 1 1446 154 92 29 chr4 13130565 13130837 -189197510 - AluJb SINE Alu -23 289 1 831 249 170 52 chr4 13130837 13130949 -189197398 - L1ME3A LINE L1 -375 5795 5587 267 271 59 17 chr4 13131105 13131223 -189197124 - L1MEc LINE L1 -3644 2485 2363 30 0 0 0 chr4 13131534 13131564 -189196783 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr4 13131669 13131692 -189196655 + AT_rich Low_complexity Low_complexity 1 23 0 23 92 0 0 chr4 13131929 13131994 -189196353 + AT_rich Low_complexity Low_complexity 1 65 0 212 207 55 28 chr4 13132125 13132270 -189196077 + (TA)n Simple_repeat Simple_repeat 2 150 0 397 303 49 16 chr4 13132337 13132763 -189195584 - L1MEc LINE L1 -3754 2375 1980 440 273 135 65 chr4 13133002 13133357 -189194990 - L1MEc LINE L1 -4588 1722 1343 615 316 29 14 chr4 13133384 13133729 -189194618 - L1MEc LINE L1 -4866 1253 904 254 230 82 37 chr4 13134521 13134656 -189193691 + L1ME4a LINE L1 5772 5912 -209 35 24 0 0 chr4 13134784 13134826 -189193521 + AT_rich Low_complexity Low_complexity 1 42 0 287 224 24 0 chr4 13134909 13134994 -189193353 + GA-rich Low_complexity Low_complexity 1 87 0 642 26 0 0 chr4 13135702 13135778 -189192569 + (TCTCC)n Simple_repeat Simple_repeat 4 79 0 256 348 95 13 chr4 13136214 13136372 -189191975 - MIR SINE MIR -10 252 82 284 338 45 13 chr4 13136434 13136591 -189191756 + MIR3 SINE MIR 45 206 -2 1869 101 0 122 chr4 13137749 13138086 -189190261 - AluY SINE Alu -5 296 1 2174 131 0 0 chr4 13138096 13138408 -189189939 - AluSx SINE Alu 0 312 1 3422 172 9 44 chr4 13139325 13140075 -189188272 + L1MA10 LINE L1 5609 6332 -2 248 323 32 13 chr4 13140466 13140600 -189187747 + MIR SINE MIR 47 183 -25 789 291 37 8 chr4 13140667 13140911 -189187436 + MIR SINE MIR 2 252 -10 210 370 12 0 chr4 13141315 13141396 -189186951 + L2 LINE L2 252 333 -2981 1012 301 84 125 chr4 13141515 13142968 -189185379 + L2 LINE L2 393 1705 -1609 216 0 0 0 chr4 13142968 13142992 -189185355 + (TAAA)n Simple_repeat Simple_repeat 4 27 0 1012 301 84 125 chr4 13142992 13144007 -189184340 + L2 LINE L2 1705 2760 -554 561 267 0 0 chr4 13144310 13144430 -189183917 + FLAM_A SINE Alu 1 120 -13 29 28 0 0 chr4 13144432 13144468 -189183879 + AT_rich Low_complexity Low_complexity 1 36 0 1176 295 108 16 chr4 13144568 13145012 -189183335 + MLT1H LTR MaLR 1 485 -64 367 100 0 0 chr4 13145021 13145081 -189183266 - L1PA8 LINE L1 0 6172 6113 2024 102 0 0 chr4 13145082 13145356 -189182991 + L1PA8 LINE L1 5843 6116 -56 22 56 0 0 chr4 13145843 13145879 -189182468 + AT_rich Low_complexity Low_complexity 1 36 0 2212 179 15 5 chr4 13146014 13146410 -189181937 + MSTA-int LTR MaLR 1250 1649 -2 2011 144 131 8 chr4 13146413 13146794 -189181553 + MSTA LTR MaLR 1 428 0 437 324 107 47 chr4 13146798 13147043 -189181304 - L1MC4a LINE L1 -1898 5910 5681 1692 155 48 7 chr4 13147043 13147361 -189180986 + AluSx SINE Alu 1 312 0 437 324 107 47 chr4 13147361 13147584 -189180763 - L1MC4a LINE L1 -2127 5681 5414 2529 71 0 0 chr4 13148615 13148925 -189179422 + AluY SINE Alu 1 310 -1 25 0 0 0 chr4 13148978 13149003 -189179344 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr4 13149644 13149672 -189178675 + AT_rich Low_complexity Low_complexity 1 28 0 268 399 59 24 chr4 13149974 13150262 -189178085 + L2 LINE L2 2457 2754 -560 1989 115 7 14 chr4 13150341 13150511 -189177836 - AluSp SINE Alu -9 304 135 2567 58 0 3 chr4 13150511 13150823 -189177524 - AluY SINE Alu 0 311 1 1989 115 7 14 chr4 13150823 13150948 -189177399 - AluSp SINE Alu -178 135 11 319 325 24 32 chr4 13151218 13151341 -189177006 + L2 LINE L2 3139 3260 -12 267 79 0 0 chr4 13151342 13151380 -189176967 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 226 321 12 12 chr4 13151893 13151977 -189176370 - MIR3 SINE MIR -11 197 114 2565 214 47 43 chr4 13152389 13153033 -189175314 - MER82 DNA MER2_type 0 653 8 894 241 80 19 chr4 13153176 13153500 -189174847 + MER2 DNA MER2_type 1 344 0 612 174 0 0 chr4 13153764 13153862 -189174485 - AluJo SINE Alu -16 296 199 687 170 0 0 chr4 13153865 13153977 -189174370 - AluJo SINE Alu -190 122 11 27 29 0 0 chr4 13154390 13154424 -189173923 + AT_rich Low_complexity Low_complexity 1 34 0 1838 123 0 90 chr4 13154457 13154799 -189173548 - AluSg SINE Alu 0 316 3 261 83 0 0 chr4 13154907 13154943 -189173404 + (A)n Simple_repeat Simple_repeat 1 36 0 432 274 78 78 chr4 13155315 13155366 -189172981 - MLT1J LTR MaLR -1 510 460 2021 142 3 3 chr4 13155366 13155669 -189172678 + AluSq SINE Alu 1 303 -10 432 274 78 78 chr4 13155669 13155887 -189172460 - MLT1J LTR MaLR -50 461 241 745 192 81 103 chr4 13156440 13156701 -189171646 - MLT1A1 LTR MaLR -16 349 95 1553 218 50 9 chr4 13156729 13156789 -189171558 - MLT2B1 LTR ERVL 0 515 459 225 0 0 0 chr4 13156789 13156814 -189171533 + (CATA)n Simple_repeat Simple_repeat 4 28 0 1553 218 50 9 chr4 13156814 13157199 -189171148 - MLT2B1 LTR ERVL -56 459 1 448 136 0 0 chr4 13157204 13157270 -189171077 - MLT1A1 LTR MaLR -296 78 13 3230 123 0 16 chr4 13157305 13157817 -189170530 - L1PA14 LINE L1 -5 6156 5653 810 134 0 0 chr4 13157819 13157938 -189170409 + L1PA14 LINE L1 5507 5625 -536 333 284 39 10 chr4 13158464 13158566 -189169781 + L2 LINE L2 3199 3303 -10 3266 87 2 9 chr4 13158981 13159432 -189168915 + L1PA10 LINE L1 5710 6157 -11 25 0 0 0 chr4 13160063 13160088 -189168259 + AT_rich Low_complexity Low_complexity 1 25 0 234 263 81 106 chr4 13160653 13160851 -189167496 + LTR16C LTR ERVL 297 489 -2 380 271 93 0 chr4 13161006 13161124 -189167223 + MIR SINE MIR 9 137 -125 615 114 72 0 chr4 13161144 13161310 -189167037 + (TA)n Simple_repeat Simple_repeat 1 178 0 184 250 0 0 chr4 13161350 13161394 -189166953 - MIR SINE MIR -82 126 83 209 273 0 0 chr4 13161721 13161776 -189166571 + (TTCA)n Simple_repeat Simple_repeat 3 57 0 239 338 51 25 chr4 13161780 13161937 -189166410 - L2 LINE L2 -30 3283 3123 447 349 99 49 chr4 13162276 13162975 -189165372 - L2 LINE L2 -583 2731 1998 1039 227 63 39 chr4 13163181 13163516 -189164831 - MLT1C LTR MaLR 0 467 125 353 44 0 0 chr4 13163525 13163570 -189164777 + U5 snRNA snRNA 4 48 -68 * 401 287 17 9 chr4 13163566 13163681 -189164666 - MLT1C LTR MaLR -333 134 19 616 51 13 0 chr4 13163866 13163945 -189164402 - MADE1 DNA Mariner 0 80 1 222 354 85 15 chr4 13165127 13165257 -189163090 - MIR SINE MIR -6 256 118 322 222 61 40 chr4 13165965 13166047 -189162300 - MLT1H LTR MaLR -353 196 113 1188 192 76 139 chr4 13166047 13166442 -189161905 + MLT1E LTR MaLR 1 370 -223 2140 142 9 3 chr4 13166620 13166965 -189161382 + L1PA15 LINE L1 5817 6163 -2 2765 13 0 3 chr4 13169962 13170269 -189158078 + AluYb8 SINE Alu 1 306 -12 1209 168 29 5 chr4 13170280 13170489 -189157858 + AluJb SINE Alu 86 299 -13 300 254 46 69 chr4 13170807 13170937 -189157410 - L1MC4 LINE L1 -1331 6711 6585 2864 194 43 19 chr4 13171251 13171884 -189156463 - L1MB7 LINE L1 -9 6175 5528 1985 130 10 3 chr4 13172179 13172471 -189155876 - AluSc SINE Alu -15 294 1 274 250 0 83 chr4 13172612 13172732 -189155615 + MIR SINE MIR 153 262 0 21 57 0 0 chr4 13172895 13172930 -189155417 + AT_rich Low_complexity Low_complexity 1 35 0 26 0 0 0 chr4 13173052 13173078 -189155269 + AT_rich Low_complexity Low_complexity 1 26 0 1682 136 3 71 chr4 13173197 13173520 -189154827 + LTR62 LTR ERVK 1 301 -418 2196 157 73 13 chr4 13173547 13173943 -189154404 - MSTB LTR MaLR -6 420 1 2424 159 0 13 chr4 13173945 13174495 -189153852 - L1P4 LINE L1 -518 5648 5105 212 280 149 28 chr4 13174566 13174673 -189153674 + L2 LINE L2 3153 3272 0 297 373 30 15 chr4 13174712 13174846 -189153501 - MIR3 SINE MIR -62 146 11 298 276 22 120 chr4 13175322 13175547 -189152800 + MIR SINE MIR 40 242 -20 263 211 35 0 chr4 13175548 13175605 -189152742 - MLT1H LTR MaLR -2 547 489 1597 180 22 30 chr4 13175605 13176031 -189152316 + L1MA8 LINE L1 5929 6351 0 2849 88 26 0 chr4 13176031 13176449 -189151898 - L1P LINE L1 -837 5309 4881 248 239 37 18 chr4 13177354 13177463 -189150884 + L1M4 LINE L1 4924 5034 -1112 1194 186 49 40 chr4 13177680 13177927 -189150420 + AluJo SINE Alu 55 303 -9 358 297 69 12 chr4 13177949 13178126 -189150221 + L1M4 LINE L1 5262 5460 -712 4495 148 22 9 chr4 13178142 13178910 -189149437 - L1PA16 LINE L1 0 6166 5389 479 179 38 0 chr4 13178904 13179010 -189149337 - L1PA16 LINE L1 -1086 5060 4951 * 3072 209 7 13 chr4 13179389 13180096 -189148251 - L1P LINE L1 -774 5372 4670 2675 212 6 39 chr4 13180093 13180764 -189147583 + L1P LINE L1 4043 4691 -1455 * 360 291 0 102 chr4 13180764 13180970 -189147377 - L1ME LINE L1 -5334 1525 1341 246 277 0 50 chr4 13180971 13181072 -189147275 - L1ME LINE L1 -5480 1467 1372 319 371 86 43 chr4 13181087 13181343 -189147004 - L1ME LINE L1 -5546 1401 1135 244 309 0 0 chr4 13181695 13181776 -189146571 - L1ME LINE L1 -5940 1007 927 226 343 173 26 chr4 13181893 13182199 -189146148 - L2 LINE L2 -2656 658 308 240 245 0 19 chr4 13182285 13182338 -189146009 + MIR SINE MIR 59 110 -152 308 374 0 4 chr4 13183264 13183368 -189144979 + MIR SINE MIR 14 115 -93 700 215 134 8 chr4 13183369 13183674 -189144673 + MER57A LTR ERV1 1 375 -28 2105 114 0 0 chr4 13183674 13183999 -189144348 + AluSg SINE Alu 1 325 0 2861 237 23 66 chr4 13184029 13184929 -189143418 + MER57A-int LTR ERV1 3 864 -6673 724 277 28 24 chr4 13185138 13185391 -189142956 + MER34C LTR ERV1 155 408 -177 812 272 66 21 chr4 13185472 13185759 -189142588 + MER57B-int LTR ERV1 4168 4467 -2291 1398 193 54 33 chr4 13185945 13186310 -189142037 - MSTB1 LTR MaLR 0 396 1 449 242 11 76 chr4 13186325 13186509 -189141838 + MER57B-int LTR ERV1 1549 2095 -3028 717 224 95 84 chr4 13186517 13186866 -189141481 + MER57B-int LTR ERV1 2364 3833 -2385 * 3081 213 68 74 chr4 13186848 13188289 -189140058 + MER57B-int LTR ERV1 2464 5821 -1716 993 214 23 26 chr4 13188781 13189099 -189139248 + MER57B-int LTR ERV1 3954 4100 -771 4192 214 20 20 chr4 13189454 13190400 -189137947 + MER57B-int LTR ERV1 6200 7145 -392 630 187 24 8 chr4 13190402 13190525 -189137822 + LTR54B LTR ERV1 8 132 -366 774 200 0 26 chr4 13190705 13190860 -189137487 + MER57B-int LTR ERV1 7387 7537 0 282 240 128 16 chr4 13190862 13190987 -189137360 + MER57B LTR ERV1 3 141 -293 366 222 22 0 chr4 13191025 13191115 -189137232 + MER57A LTR ERV1 235 326 -77 184 378 51 0 chr4 13191157 13191255 -189137092 + MIR SINE MIR 126 228 -34 26 0 0 0 chr4 13191449 13191475 -189136872 + AT_rich Low_complexity Low_complexity 1 26 0 1763 107 0 34 chr4 13191954 13192271 -189136076 - AluSx SINE Alu 0 344 37 409 240 80 108 chr4 13193075 13193362 -189134985 - L1MC4 LINE L1 -11 8031 7753 3489 239 59 15 chr4 13193362 13193966 -189134381 - L1MC4 LINE L1 -540 7502 6835 1426 186 71 29 chr4 13193966 13194316 -189134031 + MLT1A1 LTR MaLR 1 365 0 3489 239 59 15 chr4 13194316 13194708 -189133639 - L1MC4 LINE L1 -1207 6835 6462 1764 141 120 20 chr4 13195393 13195416 -189132931 + THE1C LTR MaLR 1 20 -355 2597 89 104 7 chr4 13195416 13195821 -189132526 + MLT2A1 LTR ERVL 1 444 0 1764 141 120 20 chr4 13195821 13196138 -189132209 + THE1C LTR MaLR 20 375 0 733 230 42 5 chr4 13196955 13197168 -189131179 + MER33 DNA MER1_type 1 221 -103 1728 323 125 30 chr4 13197176 13198046 -189130301 + L2 LINE L2 1744 2530 -783 1892 117 99 38 chr4 13198046 13198389 -189129958 - THE1B LTR MaLR 0 364 1 11528 94 9 1 chr4 13198390 13199955 -189128392 - THE1B-int LTR MaLR -1 1579 3 1975 123 91 26 chr4 13199957 13200299 -189128048 - THE1B LTR MaLR 0 364 1 1728 323 125 30 chr4 13200299 13200851 -189127496 + L2 LINE L2 2530 3310 -3 877 178 0 35 chr4 13201028 13201139 -189127208 + MER3 DNA MER1_type 47 152 -57 1542 146 59 150 chr4 13201139 13201366 -189126981 + Tigger2a DNA MER2_type 3 166 -2542 2254 135 0 0 chr4 13201366 13201678 -189126669 - AluSx SINE Alu 0 312 1 1542 146 59 150 chr4 13201678 13201924 -189126423 + Tigger2a DNA MER2_type 166 433 -1 877 178 0 35 chr4 13201924 13201981 -189126366 + MER3 DNA MER1_type 152 209 0 186 343 59 20 chr4 13201987 13202089 -189126258 + L2 LINE L2 3156 3261 -11 1237 231 29 41 chr4 13202146 13202296 -189126051 - MLT1A1 LTR MaLR 0 374 224 1933 102 4 0 chr4 13202296 13202550 -189125797 - AluSc SINE Alu 0 309 55 1237 231 29 41 chr4 13202550 13202756 -189125591 - MLT1A1 LTR MaLR -150 224 3 383 344 11 50 chr4 13202812 13202992 -189125355 + MIR SINE MIR 20 192 -70 667 87 0 0 chr4 13204587 13204679 -189123668 - AluSg/x SINE Alu 0 310 219 2189 126 0 0 chr4 13204846 13205139 -189123208 - AluSg SINE Alu -11 299 7 917 216 0 25 chr4 13205146 13205400 -189122947 - MLT1A1 LTR MaLR -61 304 1 282 300 0 0 chr4 13205402 13205472 -189122875 - MIR SINE MIR -112 150 81 281 260 39 87 chr4 13205544 13205648 -189122699 + MIR SINE MIR 20 118 -144 647 304 77 5 chr4 13205657 13205877 -189122470 + MIR SINE MIR 22 257 -5 191 260 130 13 chr4 13205908 13205985 -189122362 + MIR SINE MIR 120 205 -57 316 283 139 27 chr4 13206258 13206445 -189121902 + MIR SINE MIR 13 220 -42 22 35 0 0 chr4 13206581 13206610 -189121737 + AT_rich Low_complexity Low_complexity 1 29 0 2669 101 28 0 chr4 13206966 13207353 -189120994 - L1P LINE L1 -3533 2613 2216 6279 31 1 4 chr4 13207353 13208097 -189120250 + L1PA7 LINE L1 5402 6143 -11 251 270 0 40 chr4 13208151 13208225 -189120122 - L2 LINE L2 -2 3270 3200 2102 140 0 13 chr4 13208642 13208950 -189119397 + AluSx SINE Alu 1 304 -8 1761 177 0 11 chr4 13208987 13209270 -189119077 + AluJb SINE Alu 3 282 -30 190 313 114 8 chr4 13209359 13209490 -189118857 + MIR3 SINE MIR 61 205 -3 1071 193 30 44 chr4 13209665 13209853 -189118494 + LTR37A LTR ERV1 1 185 -241 2142 161 28 3 chr4 13209853 13210208 -189118139 - MLT1A1 LTR MaLR 0 365 2 1071 193 30 44 chr4 13210208 13210315 -189118032 + LTR37A LTR ERV1 185 292 -134 1621 202 5 68 chr4 13210561 13210972 -189117375 - MLT1B LTR MaLR 0 390 6 758 172 43 27 chr4 13211226 13211412 -189116935 + MER53 DNA DNA 1 189 0 867 218 38 114 chr4 13211509 13211631 -189116716 + MLT1B LTR MaLR 9 139 -251 2679 33 0 3 chr4 13211631 13211938 -189116409 + AluY SINE Alu 1 306 -5 867 218 38 114 chr4 13211938 13212231 -189116116 + MLT1B LTR MaLR 139 390 0 211 226 65 48 chr4 13212248 13212310 -189116037 + L2 LINE L2 3208 3270 -2 245 335 34 62 chr4 13213403 13213582 -189114765 - MIR SINE MIR -3 259 86 514 328 87 0 chr4 13214199 13214394 -189113953 + MIR SINE MIR 20 231 -31 314 278 10 21 chr4 13214786 13214883 -189113464 + MIR3 SINE MIR 90 185 -23 21 0 0 0 chr4 13214943 13214964 -189113383 + AT_rich Low_complexity Low_complexity 1 21 0 345 308 11 0 chr4 13215485 13215576 -189112771 - MIR3 SINE MIR -43 165 74 246 291 45 60 chr4 13215826 13215960 -189112387 + MIR SINE MIR 118 249 -13 2564 281 103 66 chr4 13216248 13217772 -189110575 + HAL1 LINE L1 62 1705 -802 1475 146 29 36 chr4 13217772 13218047 -189110300 + AluJb SINE Alu 21 293 -19 2564 281 103 66 chr4 13218047 13218881 -189109466 + HAL1 LINE L1 1705 2507 0 194 289 0 113 chr4 13219337 13219434 -189108913 - MIR3 SINE MIR -14 194 109 653 277 18 79 chr4 13219591 13219869 -189108478 - MIR SINE MIR 0 262 2 238 314 0 0 chr4 13220048 13220118 -189108229 + L2 LINE L2 3203 3272 0 827 200 0 0 chr4 13220768 13220913 -189107434 - FRAM SINE Alu -26 150 6 2357 244 30 51 chr4 13220931 13221246 -189107101 - L1ME1 LINE L1 -58 6502 6182 2476 100 47 3 chr4 13221246 13221605 -189106742 - THE1C LTR MaLR 0 375 1 2357 244 30 51 chr4 13221605 13222745 -189105602 - L1ME1 LINE L1 -378 6182 5084 2067 248 55 41 chr4 13222780 13223535 -189104812 - L1ME1 LINE L1 -2106 4434 3657 1176 155 22 9 chr4 13223535 13223761 -189104586 - L1MA2 LINE L1 -13 6291 6063 2067 248 55 41 chr4 13223761 13224141 -189104206 - L1ME1 LINE L1 -2883 3657 3284 1626 204 21 104 chr4 13224135 13224361 -189103986 + L1MA8 LINE L1 5647 5890 -401 * 2065 85 53 14 chr4 13224361 13224644 -189103703 + AluY SINE Alu 1 294 -17 1626 204 21 104 chr4 13224644 13224916 -189103431 + L1MA8 LINE L1 5890 6075 -216 1773 181 48 0 chr4 13224916 13225247 -189103100 - MER7A DNA MER2_type 0 346 2 1626 204 21 104 chr4 13225247 13225428 -189102919 + L1MA8 LINE L1 6075 6270 -21 2322 100 0 6 chr4 13225466 13225777 -189102570 - AluSc SINE Alu 0 309 1 1036 215 57 73 chr4 13225777 13226326 -189102021 - L1ME1 LINE L1 -3277 3263 2724 2074 242 101 21 chr4 13226360 13226684 -189101663 - L1ME1 LINE L1 -4538 2002 1705 233 57 29 0 chr4 13226684 13226719 -189101628 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 2074 242 101 21 chr4 13226719 13227319 -189101028 - L1ME1 LINE L1 -4835 1705 1007 227 337 232 23 chr4 13228207 13228513 -189099834 + L2 LINE L2 2903 3272 0 388 320 39 54 chr4 13229092 13229351 -189098996 + MLT1L LTR MaLR 5 259 -356 558 234 48 14 chr4 13229377 13229586 -189098761 - L1MC5 LINE L1 -770 7191 6976 601 223 0 16 chr4 13229599 13229720 -189098627 - AluJb SINE Alu -21 291 173 1013 175 0 0 chr4 13229919 13230079 -189098268 - AluJb SINE Alu -152 160 1 521 323 56 10 chr4 13230253 13230448 -189097899 + MIR SINE MIR 18 221 -41 569 100 0 0 chr4 13230505 13230585 -189097762 + MADE1 DNA Mariner 1 80 0 534 333 187 21 chr4 13230818 13231391 -189096956 + L2 LINE L2 1530 2197 -1117 884 297 125 55 chr4 13231749 13232777 -189095570 + L2 LINE L2 2208 3313 0 196 376 123 19 chr4 13233207 13233369 -189094978 - L2 LINE L2 -541 2773 2595 218 250 0 0 chr4 13233498 13233550 -189094797 + L2 LINE L2 3248 3299 -14 2123 127 0 0 chr4 13233707 13233999 -189094348 + AluSx SINE Alu 1 292 -20 545 176 0 17 chr4 13234255 13234374 -189093973 + (CATA)n Simple_repeat Simple_repeat 2 118 0 305 333 0 0 chr4 13234381 13234471 -189093876 + L1MC4 LINE L1 6614 6703 -1339 * 319 326 0 0 chr4 13234417 13234506 -189093841 - L1MC4 LINE L1 -1339 6703 6615 2177 123 0 0 chr4 13234525 13234818 -189093529 - AluSg SINE Alu -17 293 1 24 32 0 0 chr4 13234827 13234858 -189093489 + AT_rich Low_complexity Low_complexity 1 31 0 362 316 61 31 chr4 13235058 13235254 -189093093 - L1ME3A LINE L1 -7 6163 5962 1516 236 131 55 chr4 13235336 13236327 -189092020 - L1MC5 LINE L1 -430 7531 6476 300 313 109 30 chr4 13236647 13237190 -189091157 - HAL1b LINE L1 -724 624 39 2213 102 3 0 chr4 13237510 13237803 -189090544 - AluSx SINE Alu -18 294 1 268 284 37 18 chr4 13238783 13238892 -189089455 + MLT1I LTR MaLR 245 355 -54 263 167 15 0 chr4 13239160 13239226 -189089121 + (TA)n Simple_repeat Simple_repeat 2 68 0 237 24 71 0 chr4 13239255 13239297 -189089050 + (TA)n Simple_repeat Simple_repeat 1 45 0 448 322 97 26 chr4 13239584 13239966 -189088381 + L1 LINE L1 4384 4792 -1354 245 234 52 0 chr4 13240008 13240085 -189088262 - L1MC4 LINE L1 -1344 6698 6618 285 276 15 104 chr4 13240508 13240642 -189087705 + MIR SINE MIR 29 150 -112 845 251 64 0 chr4 13240668 13240871 -189087476 + MIR SINE MIR 23 238 -24 265 288 34 34 chr4 13240884 13241002 -189087345 + MIR SINE MIR 135 252 -10 429 371 17 11 chr4 13241021 13241199 -189087148 + L3 LINE CR1 1394 1572 -5 285 151 0 0 chr4 13241328 13241381 -189086966 + (CA)n Simple_repeat Simple_repeat 2 54 0 216 277 106 0 chr4 13241497 13241591 -189086756 - MIR SINE MIR -1 261 158 337 244 85 21 chr4 13241906 13242048 -189086299 + MIR SINE MIR 20 171 -37 1654 155 146 6 chr4 13242188 13242530 -189085817 + MLT1B LTR MaLR 1 390 0 435 261 25 8 chr4 13242649 13242768 -189085579 - LTR28 LTR ERV1 0 1020 900 1299 197 132 110 chr4 13242847 13243047 -189085300 - LTR28 LTR ERV1 -81 816 622 257 0 30 0 chr4 13243047 13243080 -189085267 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 2869 24 0 3 chr4 13243080 13243414 -189084933 - L1PA2 LINE L1 -13 6142 5810 1299 197 132 110 chr4 13243414 13243961 -189084386 - LTR28 LTR ERV1 -274 623 1 290 304 35 17 chr4 13244037 13244152 -189084195 + MIR3 SINE MIR 11 127 -81 206 266 53 80 chr4 13245141 13245254 -189083093 + MIR SINE MIR 86 195 -67 2534 236 32 5 chr4 13245412 13246027 -189082320 - MER73 LTR ERVL 0 644 13 390 317 23 75 chr4 13246137 13246402 -189081945 - L2 LINE L2 -40 3273 3023 222 116 0 0 chr4 13246812 13246855 -189081492 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 259 241 0 11 chr4 13246864 13246951 -189081396 + (TA)n Simple_repeat Simple_repeat 2 87 0 288 77 0 0 chr4 13246951 13246990 -189081357 + (CA)n Simple_repeat Simple_repeat 2 40 0 307 242 68 60 chr4 13247918 13248189 -189080158 + L1ME4a LINE L1 5535 5833 -288 2428 95 0 0 chr4 13248189 13248494 -189079853 + AluY SINE Alu 1 305 -6 307 242 68 60 chr4 13248494 13248589 -189079758 + L1ME4a LINE L1 5833 5926 -195 282 287 103 52 chr4 13248782 13248956 -189079391 + MER58A DNA MER1_type 27 209 -15 979 221 19 5 chr4 13249021 13249234 -189079113 + MER20 DNA MER1_type 4 219 0 238 162 38 36 chr4 13249599 13249846 -189078501 + (TA)n Simple_repeat Simple_repeat 1 247 0 194 296 43 26 chr4 13250339 13250454 -189077893 + MIR SINE MIR 125 241 -21 * 306 293 96 27 chr4 13250446 13250634 -189077713 - MIR SINE MIR -30 232 32 2165 182 23 14 chr4 13250712 13251140 -189077207 + MSTB1 LTR MaLR 1 432 0 225 236 14 42 chr4 13252921 13252993 -189075354 - MIR SINE MIR -63 199 130 1940 153 0 0 chr4 13253204 13253507 -189074840 - AluSx SINE Alu 0 305 3 2690 107 0 6 chr4 13253690 13254055 -189074292 + THE1B LTR MaLR 1 363 -1 250 231 0 0 chr4 13254227 13254279 -189074068 + (CA)n Simple_repeat Simple_repeat 1 52 0 340 308 131 37 chr4 13254355 13254738 -189073609 - L2 LINE L2 -671 2643 2225 206 243 29 29 chr4 13255200 13255270 -189073077 - MIR SINE MIR -32 230 161 294 168 36 93 chr4 13255274 13255381 -189072966 - MLT1F LTR MaLR -1 541 443 248 267 50 33 chr4 13255526 13255646 -189072701 - MLT1F LTR MaLR -292 257 136 217 219 158 12 chr4 13255697 13255779 -189072568 - MIR SINE MIR -66 196 103 339 293 65 126 chr4 13255874 13256168 -189072179 - L2 LINE L2 -87 3185 2910 235 286 0 0 chr4 13256350 13256399 -189071948 + (CA)n Simple_repeat Simple_repeat 1 49 0 2171 102 17 3 chr4 13256943 13257065 -189071282 + AluSp SINE Alu 1 120 -193 468 0 0 0 chr4 13257065 13257117 -189071230 + (TAA)n Simple_repeat Simple_repeat 2 53 0 2171 102 17 3 chr4 13257117 13257289 -189071058 + AluSp SINE Alu 120 299 -14 409 310 30 42 chr4 13257414 13257619 -189070728 + MIR SINE MIR 3 195 -36 369 289 131 56 chr4 13257677 13258050 -189070297 - LTR16A1 LTR ERVL -56 401 1 262 330 11 0 chr4 13258221 13258312 -189070035 + MIR SINE MIR 17 108 -154 1288 216 69 49 chr4 13258354 13258802 -189069545 + MLT1C LTR MaLR 9 465 -2 301 286 0 0 chr4 13258807 13258884 -189069463 + MIR SINE MIR 161 237 -25 2005 145 0 0 chr4 13260424 13260759 -189067588 - AluSx SINE Alu 0 335 1 433 236 99 19 chr4 13260951 13261112 -189067235 + MER117 DNA MER1_type 24 197 0 463 183 54 11 chr4 13261112 13261205 -189067142 + L2 LINE L2 3172 3268 -4 278 318 23 102 chr4 13261855 13262031 -189066316 + MIR SINE MIR 32 193 -69 231 306 89 8 chr4 13262390 13262514 -189065833 - MIR SINE MIR -114 148 15 374 274 126 39 chr4 13265551 13265747 -189062600 - MIR SINE MIR -7 255 36 21 0 0 0 chr4 13265804 13265825 -189062522 + AT_rich Low_complexity Low_complexity 1 21 0 288 91 0 0 chr4 13266008 13266052 -189062295 + (CA)n Simple_repeat Simple_repeat 1 44 0 939 210 75 45 chr4 13266060 13266393 -189061954 - MER2 DNA MER2_type 0 344 2 513 191 0 0 chr4 13266394 13266499 -189061848 + (TG)n Simple_repeat Simple_repeat 2 106 0 501 271 92 39 chr4 13266657 13266941 -189061406 + MLT1K LTR MaLR 128 426 -162 468 303 67 71 chr4 13267502 13267951 -189060396 + L1M4 LINE L1 3354 3800 -2346 224 322 35 35 chr4 13268124 13268211 -189060136 - MIR SINE MIR -149 113 27 278 150 0 17 chr4 13268411 13268471 -189059876 + (TTTC)n Simple_repeat Simple_repeat 3 61 0 210 360 130 33 chr4 13268776 13269198 -189059149 + L2 LINE L2 2475 2937 -377 40768 34 21 1 chr4 13270196 13276221 -189052126 + L1PA3 LINE L1 7 6155 0 1599 230 100 25 chr4 13276243 13276713 -189051634 + MLT1D LTR MaLR 1 505 0 1472 219 52 52 chr4 13276713 13277233 -189051114 + MLT1D-int LTR MaLR 1 611 -760 183 279 70 109 chr4 13277379 13277608 -189050739 - L2 LINE L2 -1774 1540 1321 357 109 0 0 chr4 13277626 13277681 -189050666 + (ATG)n Simple_repeat Simple_repeat 3 57 0 209 234 44 29 chr4 13277845 13277982 -189050365 + (TATAA)n Simple_repeat Simple_repeat 1 139 0 356 274 19 19 chr4 13278014 13278120 -189050227 - MIR SINE MIR -108 154 49 181 308 19 0 chr4 13278150 13278202 -189050145 - MIR SINE MIR -207 55 3 211 319 89 30 chr4 13278545 13278714 -189049633 + MIR3 SINE MIR 24 202 -6 480 366 42 28 chr4 13278859 13279288 -189049059 + L3 LINE CR1 1074 1508 -69 277 330 127 41 chr4 13279472 13279669 -189048678 + MIR SINE MIR 48 261 -1 542 311 96 34 chr4 13280100 13280486 -189047861 + LTR16C LTR ERVL 82 491 0 2285 75 0 30 chr4 13280521 13280826 -189047521 + AluY SINE Alu 1 296 -15 182 37 37 0 chr4 13280938 13280965 -189047382 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 1608 199 69 62 chr4 13281439 13281887 -189046460 - MLT2B1 LTR ERVL -69 451 1 409 359 151 9 chr4 13282334 13282752 -189045595 - L2 LINE L2 -540 2774 2286 2080 116 78 29 chr4 13282752 13283097 -189045250 + THE1B LTR MaLR 1 362 -2 409 359 151 9 chr4 13283097 13283129 -189045218 - L2 LINE L2 -1028 2286 2260 210 282 196 49 chr4 13284446 13284609 -189043738 + L2 LINE L2 3125 3311 -2 254 255 102 31 chr4 13284755 13284853 -189043494 - MIR SINE MIR -46 216 112 568 311 44 22 chr4 13285092 13285320 -189043027 + L2 LINE L2 3081 3313 0 268 229 14 0 chr4 13285413 13285483 -189042864 + MER116 DNA Mariner 2 72 -8 272 347 89 37 chr4 13285596 13285786 -189042561 - L2 LINE L2 -546 2768 2569 420 226 73 8 chr4 13286342 13286466 -189041881 + MER94 DNA DNA 3 134 0 255 31 0 0 chr4 13286864 13286896 -189041451 + (TTTTTG)n Simple_repeat Simple_repeat 4 35 0 592 224 189 5 chr4 13286943 13287144 -189041203 + MER5C DNA MER1_type 86 323 -1 186 316 13 38 chr4 13287162 13287241 -189041106 + MIR SINE MIR 97 173 -89 23 68 0 0 chr4 13287282 13287326 -189041021 + AT_rich Low_complexity Low_complexity 1 44 0 1937 106 20 0 chr4 13287936 13288229 -189040118 - L1MA2 LINE L1 0 6304 6006 1698 192 15 52 chr4 13288290 13288691 -189039656 + MLT1B LTR MaLR 1 386 -4 248 213 49 16 chr4 13289014 13289075 -189039272 + MIR3 SINE MIR 109 171 -37 460 279 66 66 chr4 13289085 13289329 -189039018 + MIR SINE MIR 15 258 -4 356 330 69 67 chr4 13290897 13291258 -189037089 - L2 LINE L2 0 3272 2911 284 359 55 39 chr4 13291295 13291730 -189036617 - L2 LINE L2 -67 3246 2805 1543 246 66 25 chr4 13291846 13292286 -189036061 + MLT2B1 LTR ERVL 1 458 -62 275 122 20 0 chr4 13292286 13292335 -189036012 + (TAGA)n Simple_repeat Simple_repeat 2 51 0 227 204 0 23 chr4 13294008 13294052 -189034295 + L2 LINE L2 3268 3310 -3 343 359 26 0 chr4 13295233 13295350 -189032997 - L2 LINE L2 -6 3266 3147 1302 195 19 39 chr4 13295408 13295715 -189032632 - MLT1A1 LTR MaLR -64 301 1 1930 225 12 9 chr4 13295715 13296141 -189032206 - MLT1A1-int LTR MaLR 0 1735 1309 2436 242 48 10 chr4 13296519 13297147 -189031200 - MLT1A1-int LTR MaLR -1075 660 9 1394 229 49 9 chr4 13297150 13297500 -189030847 - MLT1A1 LTR MaLR -1 364 1 211 290 0 0 chr4 13297571 13297640 -189030707 + (TA)n Simple_repeat Simple_repeat 2 70 0 2262 138 0 0 chr4 13297667 13297979 -189030368 - AluSx SINE Alu 0 312 1 25 0 0 0 chr4 13298194 13298219 -189030128 + AT_rich Low_complexity Low_complexity 1 25 0 27 87 0 0 chr4 13298561 13298630 -189029717 + AT_rich Low_complexity Low_complexity 1 69 0 282 341 170 4 chr4 13299431 13299701 -189028646 - L3 LINE CR1 -113 1464 1150 269 331 167 36 chr4 13299720 13300134 -189028213 + L2 LINE L2 1940 2407 -907 276 360 9 0 chr4 13301538 13301649 -189026698 - MIR SINE MIR 0 262 151 186 226 57 38 chr4 13302213 13302266 -189026081 - MIR SINE MIR -87 175 122 583 329 68 30 chr4 13303278 13303752 -189024595 + LTR33 LTR ERVL 23 514 -7 608 327 90 46 chr4 13303755 13304189 -189024158 + L2 LINE L2 226 678 -2636 415 265 45 53 chr4 13304185 13304317 -189024030 - L2 LINE L2 0 3272 3142 * 538 321 39 25 chr4 13304393 13304673 -189023674 + L2 LINE L2 718 1001 -2313 535 295 145 45 chr4 13304944 13305320 -189023027 + L1ME3A LINE L1 5366 5812 -358 230 0 33 0 chr4 13305320 13305350 -189022997 + (TA)n Simple_repeat Simple_repeat 1 31 0 535 295 145 45 chr4 13305350 13305505 -189022842 + L1ME3A LINE L1 5812 5950 -220 186 43 0 0 chr4 13305524 13305547 -189022800 + (TA)n Simple_repeat Simple_repeat 2 24 0 228 238 29 0 chr4 13305717 13305822 -189022525 + (TA)n Simple_repeat Simple_repeat 1 108 0 450 237 65 14 chr4 13306055 13306194 -189022153 + MIR SINE MIR 99 244 -18 21 0 0 0 chr4 13306224 13306245 -189022102 + AT_rich Low_complexity Low_complexity 1 21 0 479 315 117 0 chr4 13306627 13306849 -189021498 + MIR SINE MIR 5 252 -10 346 351 70 0 chr4 13307452 13307594 -189020753 + MIR SINE MIR 31 181 -81 1069 243 105 27 chr4 13308125 13308457 -189019890 - MLT1F1 LTR MaLR -1 566 209 567 239 74 12 chr4 13308457 13308620 -189019727 + MLT1B LTR MaLR 1 173 -217 390 319 25 25 chr4 13308690 13308847 -189019500 - MLT1F1 LTR MaLR -385 157 1 255 283 50 17 chr4 13309935 13310055 -189018292 - MLT1L LTR MaLR -122 493 370 203 83 28 28 chr4 13310255 13310291 -189018056 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 352 277 31 8 chr4 13310417 13310547 -189017800 + MLT2E LTR ERVL 10 142 -486 225 0 0 0 chr4 13310549 13310574 -189017773 + (TTTTA)n Simple_repeat Simple_repeat 1 25 0 3784 76 2 8 chr4 13310574 13311103 -189017244 - L1PA8 LINE L1 -24 6148 5623 2155 122 7 3 chr4 13311409 13311697 -189016650 + AluSg SINE Alu 1 289 -21 333 357 51 26 chr4 13311748 13311997 -189016350 + MIR SINE MIR 6 258 -4 25 0 0 0 chr4 13312028 13312053 -189016294 + AT_rich Low_complexity Low_complexity 1 25 0 245 219 0 16 chr4 13312327 13312391 -189015956 + (TAAA)n Simple_repeat Simple_repeat 2 64 0 2856 210 79 31 chr4 13312442 13312508 -189015839 + L1MC3 LINE L1 6793 6854 -931 920 115 11 11 chr4 13312508 13312682 -189015665 + (GGAA)n Simple_repeat Simple_repeat 2 175 0 2856 210 79 31 chr4 13312682 13312868 -189015479 + L1MC3 LINE L1 6854 7030 -755 231 88 0 0 chr4 13312868 13312902 -189015445 + (TAAA)n Simple_repeat Simple_repeat 4 37 0 2856 210 79 31 chr4 13312902 13313594 -189014753 + L1MC3 LINE L1 7030 7784 -1 2231 123 3 0 chr4 13314320 13314621 -189013726 - AluSq SINE Alu -11 302 1 214 269 51 13 chr4 13314671 13314749 -189013598 - MIR SINE MIR -126 136 56 372 257 0 46 chr4 13314822 13314931 -189013416 + MIR SINE MIR 43 146 -116 2045 98 0 11 chr4 13314931 13315208 -189013139 + AluSx SINE Alu 1 274 -38 294 95 0 0 chr4 13316929 13316971 -189011376 + (A)n Simple_repeat Simple_repeat 1 42 0 1834 193 62 24 chr4 13317815 13318265 -189010082 - MLT1C LTR MaLR 0 467 1 2445 231 163 34 chr4 13318366 13319177 -189009170 + Charlie1 DNA MER1_type 47 1023 -1738 471 189 94 9 chr4 13319177 13319308 -189009039 + FLAM_A SINE Alu 1 140 0 2445 231 163 34 chr4 13319308 13319521 -189008826 + Charlie1 DNA MER1_type 1023 1207 -1554 2101 118 0 0 chr4 13319523 13319852 -189008495 + AluSx SINE Alu 3 331 0 3263 197 68 35 chr4 13319928 13320845 -189007502 + Charlie1 DNA MER1_type 1557 2503 -258 281 225 183 0 chr4 13320901 13321043 -189007304 + Charlie1 DNA MER1_type 2594 2761 0 276 302 23 0 chr4 13321482 13321568 -189006779 + MIR SINE MIR 175 262 0 254 314 16 2 chr4 13322553 13322626 -189005721 + MIR SINE MIR 19 92 -116 430 242 0 48 chr4 13322626 13322750 -189005597 - MLT1J LTR MaLR 0 511 394 696 271 111 33 chr4 13322885 13323191 -189005156 - MLT1J LTR MaLR -181 330 1 221 240 40 0 chr4 13323191 13323241 -189005106 + MIR SINE MIR 88 139 -123 317 316 14 21 chr4 13323876 13324030 -189004317 + MIR SINE MIR 19 172 -62 993 288 36 0 chr4 13324133 13324383 -189003964 + MIR SINE MIR 4 262 0 387 290 84 26 chr4 13325950 13326105 -189002242 + MIR SINE MIR 20 183 -79 261 83 0 0 chr4 13326541 13326577 -189001770 + (TG)n Simple_repeat Simple_repeat 2 37 0 253 328 216 15 chr4 13328709 13328913 -188999434 - MIR SINE MIR -6 256 12 195 366 53 15 chr4 13328946 13329077 -188999270 - MER5B DNA MER1_type -30 148 13 23 78 0 0 chr4 13329869 13329920 -188998427 + AT_rich Low_complexity Low_complexity 1 51 0 315 0 0 0 chr4 13329945 13329980 -188998367 + (TG)n Simple_repeat Simple_repeat 2 36 0 229 265 78 20 chr4 13331337 13331439 -188996908 - L3 LINE CR1 -91 1486 1379 310 289 141 6 chr4 13331896 13332052 -188996295 - L2 LINE L2 -17 3296 3120 1085 198 32 6 chr4 13332123 13332442 -188995905 - MER74C LTR ERVL -153 405 2 250 320 80 46 chr4 13333763 13333938 -188994409 - L3 LINE CR1 -2 1575 1395 2295 119 0 7 chr4 13334278 13334588 -188993759 - AluSx SINE Alu -4 308 1 239 259 164 9 chr4 13335614 13335730 -188992617 + MLT1L LTR MaLR 150 283 -332 2382 71 0 0 chr4 13336101 13336395 -188991952 - AluY SINE Alu -17 294 1 288 337 53 0 chr4 13336604 13336699 -188991648 + L2 LINE L2 3155 3254 -18 477 356 49 31 chr4 13337507 13337732 -188990615 - MIR SINE MIR -32 230 2 456 294 14 20 chr4 13337915 13338061 -188990286 - L3 LINE CR1 -7 1570 1426 227 232 91 30 chr4 13338196 13338295 -188990052 - L3 LINE CR1 -162 1415 1311 312 137 0 0 chr4 13338724 13338775 -188989572 + (T)n Simple_repeat Simple_repeat 1 51 0 572 277 27 38 chr4 13339408 13339592 -188988755 + MER20 DNA MER1_type 33 214 -5 202 393 0 0 chr4 13339597 13339658 -188988689 - MIR SINE MIR -180 82 22 695 227 0 0 chr4 13339701 13339829 -188988518 + FLAM_A SINE Alu 2 129 -4 203 133 22 0 chr4 13341030 13341075 -188987272 + GA-rich Low_complexity Low_complexity 2 47 0 337 247 52 0 chr4 13341111 13341208 -188987139 + MIR SINE MIR 63 164 -98 290 221 36 10 chr4 13341598 13341699 -188986648 + MER5A DNA MER1_type 15 134 -55 199 349 82 20 chr4 13342228 13342374 -188985973 - MIR SINE MIR -60 202 48 210 289 40 54 chr4 13342415 13342564 -188985783 - L3b LINE CR1 -191 1392 1246 317 283 40 79 chr4 13343174 13343261 -188985086 + MIR3 SINE MIR 38 118 -90 2495 101 14 25 chr4 13343261 13343629 -188984718 - THE1B LTR MaLR 0 364 1 317 283 40 79 chr4 13343629 13343693 -188984654 + MIR3 SINE MIR 118 183 -25 382 269 255 26 chr4 13344237 13344508 -188983839 + MLT1K LTR MaLR 143 475 -113 282 342 113 17 chr4 13344768 13344999 -188983348 + MIR SINE MIR 10 262 0 269 370 91 5 chr4 13345420 13345639 -188982708 + MIR SINE MIR 6 243 -19 399 298 0 0 chr4 13347150 13347244 -188981103 - L2 LINE L2 -4 3268 3175 225 170 0 0 chr4 13347279 13347332 -188981015 - LTR66 LTR ERVL -164 446 394 234 192 0 0 chr4 13347334 13347386 -188980961 + (CATATA)n Simple_repeat Simple_repeat 6 57 0 445 330 90 30 chr4 13347509 13347842 -188980505 - L2 LINE L2 -345 2969 2617 263 196 18 18 chr4 13347842 13347898 -188980449 + L2 LINE L2 3182 3237 -76 328 367 16 29 chr4 13348070 13348315 -188980032 - L2 LINE L2 -699 2615 2374 2030 198 23 23 chr4 13348443 13348873 -188979474 + MSTB1 LTR MaLR 3 432 0 530 360 42 25 chr4 13348904 13349304 -188979043 - L2 LINE L2 -945 2369 1963 1566 237 56 48 chr4 13349315 13349585 -188978762 - MLT1D LTR MaLR -2 503 226 2087 123 69 26 chr4 13349585 13349934 -188978413 + THE1B LTR MaLR 1 364 0 1566 237 56 48 chr4 13349934 13350161 -188978186 - MLT1D LTR MaLR -279 226 2 1632 233 105 49 chr4 13350315 13350962 -188977385 - MER21B LTR ERV1 -103 760 74 2851 74 11 0 chr4 13350962 13351342 -188977005 - L1PA8 LINE L1 -3 6169 5786 4981 92 24 0 chr4 13351351 13351927 -188976420 - L1PA8 LINE L1 -763 5383 4783 402 21 0 0 chr4 13351927 13351974 -188976373 + (TA)n Simple_repeat Simple_repeat 2 48 0 4981 92 24 0 chr4 13351974 13352162 -188976185 - L1PA8 LINE L1 -1363 4783 4601 5509 129 17 8 chr4 13352163 13353114 -188975233 + L1PA8 LINE L1 3661 4619 -1527 1686 144 93 0 chr4 13353453 13353723 -188974624 - AluSx SINE Alu -15 297 3 478 271 112 52 chr4 13353763 13353972 -188974375 + HAL1 LINE L1 992 1220 -1287 2186 166 84 7 chr4 13353972 13354400 -188973947 - LOR1b LTR ERV1 0 461 1 478 271 112 52 chr4 13354400 13354441 -188973906 + HAL1 LINE L1 1220 1257 -1250 328 300 135 30 chr4 13354693 13355056 -188973291 + MLT1J2 LTR MaLR 48 448 -2 322 308 23 58 chr4 13355580 13355752 -188972595 + HAL1b LINE L1 746 911 -437 2317 114 0 16 chr4 13356181 13356498 -188971849 - AluSq SINE Alu -1 312 1 23 0 0 0 chr4 13356801 13356824 -188971523 + AT_rich Low_complexity Low_complexity 1 23 0 249 33 0 0 chr4 13358345 13358375 -188969972 + (CA)n Simple_repeat Simple_repeat 2 31 0 243 61 0 0 chr4 13358376 13358409 -188969938 + (GA)n Simple_repeat Simple_repeat 2 34 0 2023 162 0 0 chr4 13358427 13358736 -188969611 + AluSx SINE Alu 1 309 -3 2556 247 51 5 chr4 13358829 13359097 -188969250 + MER82 DNA MER2_type 3 257 -396 1850 220 30 0 chr4 13359097 13359434 -188968913 + MER7A DNA MER2_type 1 345 -1 2556 247 51 5 chr4 13359434 13359749 -188968598 + MER82 DNA MER2_type 257 613 -40 721 162 92 0 chr4 13359754 13359896 -188968451 - MSTB1 LTR MaLR -117 315 161 6557 202 61 105 chr4 13359901 13361628 -188966719 - MSTB1-int LTR MaLR 0 1651 1 2330 148 46 62 chr4 13361628 13362067 -188966280 - MSTB1 LTR MaLR 0 432 1 277 178 0 0 chr4 13362068 13362113 -188966234 + MER82 DNA MER2_type 608 652 -1 495 305 115 13 chr4 13362129 13362355 -188965992 - MIR SINE MIR 0 262 14 216 246 136 73 chr4 13363220 13363330 -188965017 + MIR SINE MIR 20 136 -72 2676 170 47 2 chr4 13363743 13364190 -188964157 - MLT1C LTR MaLR 0 467 1 24 0 0 0 chr4 13364571 13364595 -188963752 + AT_rich Low_complexity Low_complexity 1 24 0 240 329 25 0 chr4 13364915 13364994 -188963353 + MIR SINE MIR 110 190 -72 200 211 0 0 chr4 13365069 13365107 -188963240 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 180 224 134 30 chr4 13365194 13365261 -188963086 - L3 LINE CR1 -117 1460 1387 * 538 307 42 46 chr4 13365258 13365496 -188962851 - MIR SINE MIR -18 244 8 582 318 10 5 chr4 13365520 13365747 -188962600 + MIR SINE MIR 25 251 -11 870 295 13 0 chr4 13366064 13366288 -188962059 - MIR SINE MIR -10 252 26 1306 186 82 128 chr4 13366530 13367030 -188961317 + MLT1D LTR MaLR 26 502 -3 2643 196 20 14 chr4 13367132 13367687 -188960660 + L1MB7 LINE L1 5618 6175 -9 286 140 0 40 chr4 13367762 13367812 -188960535 - MLT2C2 LTR ERVL 0 464 417 326 23 0 23 chr4 13367833 13367877 -188960470 + (TG)n Simple_repeat Simple_repeat 2 44 0 1915 219 77 22 chr4 13367879 13368331 -188960016 - MLT2B1 LTR ERVL -43 477 1 330 303 113 22 chr4 13368450 13368635 -188959712 - MIR SINE MIR -38 224 23 400 252 24 49 chr4 13368834 13368957 -188959390 + MIR SINE MIR 116 235 -27 925 157 22 16 chr4 13369047 13369232 -188959115 + L1MA6 LINE L1 6111 6296 -4 2277 89 0 25 chr4 13369438 13369754 -188958593 - AluY SINE Alu -3 308 1 272 252 19 56 chr4 13370441 13370548 -188957799 + MIR3 SINE MIR 101 203 -5 547 195 107 60 chr4 13372038 13372227 -188956120 - MLT1H LTR MaLR 0 582 378 282 295 0 38 chr4 13372608 13372713 -188955634 - MIR3 SINE MIR -1 207 107 255 300 71 41 chr4 13373987 13374157 -188954190 - MIR SINE MIR -65 197 23 24 32 0 0 chr4 13374367 13374398 -188953949 + AT_rich Low_complexity Low_complexity 1 31 0 397 237 222 39 chr4 13374427 13374684 -188953663 - L1MC4a LINE L1 -1870 5938 5635 531 267 47 47 chr4 13374685 13374876 -188953471 - MIR SINE MIR -41 221 31 501 303 133 8 chr4 13374907 13375171 -188953176 - L1MC4a LINE L1 -2161 5647 5351 697 297 83 14 chr4 13375423 13375508 -188952839 - L1ME3A LINE L1 -339 5831 5753 2192 113 3 0 chr4 13375508 13375809 -188952538 - AluSg SINE Alu -8 302 1 697 297 83 14 chr4 13375809 13376013 -188952334 - L1ME3A LINE L1 -417 5753 5522 247 211 248 8 chr4 13376020 13376153 -188952194 - L1ME3A LINE L1 -802 5344 5180 1099 289 90 16 chr4 13376155 13376653 -188951694 + L2 LINE L2 2149 2683 -631 1981 127 51 6 chr4 13376753 13377084 -188951263 + MER6 DNA MER2_type 520 865 0 2102 123 13 0 chr4 13377914 13378216 -188950131 + AluSx SINE Alu 1 306 -6 691 263 27 0 chr4 13378299 13378485 -188949862 + L2 LINE L2 2179 2369 -945 606 207 7 47 chr4 13378755 13378905 -188949442 - AluJb SINE Alu -4 308 165 642 167 0 0 chr4 13379020 13379110 -188949237 + AluSg/x SINE Alu 161 250 -62 1065 148 46 65 chr4 13379110 13379326 -188949021 + AluSq SINE Alu 85 296 -17 1512 107 30 17 chr4 13379326 13379560 -188948787 + MSTA LTR MaLR 192 428 0 549 297 92 4 chr4 13379635 13379874 -188948473 - MIR SINE MIR 0 262 3 1762 132 0 12 chr4 13380062 13380319 -188948028 + AluSg SINE Alu 1 254 -56 417 255 66 54 chr4 13380429 13380688 -188947659 + L1MC4 LINE L1 7781 8042 0 337 224 0 0 chr4 13381154 13381230 -188947117 + MER116 DNA Mariner 1 76 -4 415 291 152 0 chr4 13381242 13381393 -188946954 - L3 LINE CR1 -75 1502 1329 5899 147 43 49 chr4 13381527 13382775 -188945572 - L1M4c LINE L1 -4563 1821 581 507 137 0 0 chr4 13382887 13382960 -188945387 + MER66B LTR ERV1 414 486 0 899 311 33 0 chr4 13382982 13383226 -188945121 + MER82 DNA MER2_type 402 653 0 2323 113 0 3 chr4 13383352 13383663 -188944684 + AluSg SINE Alu 1 310 0 352 241 25 0 chr4 13383715 13383794 -188944553 - 5S rRNA rRNA -37 84 4 503 288 100 33 chr4 13383886 13384247 -188944100 - L1ME3 LINE L1 -201 5961 5577 1063 106 0 0 chr4 13384297 13384429 -188943918 + AluSg1 SINE Alu 1 132 -177 201 297 81 0 chr4 13385254 13385328 -188943019 + MIR SINE MIR 66 145 -117 182 282 239 0 chr4 13386350 13386421 -188941926 + L2 LINE L2 3175 3262 -10 277 271 79 57 chr4 13388179 13388319 -188940028 - MIR SINE MIR -117 145 3 750 191 51 25 chr4 13388646 13388773 -188939574 + LTR32 LTR ERVL 15 145 -326 2511 81 14 11 chr4 13388773 13389121 -188939226 + MER4B LTR ERV1 1 349 -261 240 135 0 0 chr4 13389121 13389158 -188939189 - Alu SINE Alu -7 295 259 2052 142 24 48 chr4 13389333 13389706 -188938641 + THE1B LTR MaLR 1 364 0 21 0 0 0 chr4 13391933 13391954 -188936393 + AT_rich Low_complexity Low_complexity 1 21 0 205 216 68 40 chr4 13393760 13393834 -188934513 - MIR SINE MIR -105 157 82 1146 249 93 27 chr4 13394084 13394594 -188933753 + MER90 LTR ERV1 27 608 -6 912 217 175 18 chr4 13395075 13395361 -188932986 + L1ME3A LINE L1 5840 6170 0 1468 112 95 78 chr4 13395680 13395974 -188932373 - AluSx SINE Alu -12 300 2 275 354 55 24 chr4 13396702 13396956 -188931391 + L1MEd LINE L1 592 853 -5266 474 318 58 12 chr4 13396990 13397248 -188931099 + L1M4 LINE L1 3305 3574 -2572 1157 45 0 0 chr4 13397258 13397390 -188930957 + AluY SINE Alu 1 132 -179 2476 80 0 0 chr4 13397391 13397693 -188930654 + AluY SINE Alu 1 302 -9 187 284 90 15 chr4 13397917 13397984 -188930363 - MER5C DNA MER1_type -247 77 6 430 330 57 5 chr4 13397999 13398211 -188930136 + MIR SINE MIR 27 249 -13 408 40 0 0 chr4 13398288 13398338 -188930009 + (TG)n Simple_repeat Simple_repeat 1 50 0 270 270 114 58 chr4 13398479 13398908 -188929439 + L1MEd LINE L1 785 1237 -4882 2084 132 0 0 chr4 13399049 13399330 -188929017 + AluSq SINE Alu 13 293 -20 1911 103 58 58 chr4 13400121 13400247 -188928100 + AluSx SINE Alu 1 126 -186 225 94 0 0 chr4 13400247 13400279 -188928068 + (CAAA)n Simple_repeat Simple_repeat 4 35 0 1911 103 58 58 chr4 13400279 13400463 -188927884 + AluSx SINE Alu 125 311 -1 526 157 0 56 chr4 13400893 13400982 -188927365 + FRAM SINE Alu 69 152 -24 671 293 29 37 chr4 13401023 13401269 -188927078 - MIR SINE MIR -17 245 2 497 326 39 6 chr4 13401292 13401470 -188926877 + L3 LINE CR1 627 810 -767 1246 188 39 0 chr4 13401486 13401694 -188926653 - MER20 DNA MER1_type -3 216 1 206 211 58 0 chr4 13401802 13401854 -188926493 + L3 LINE CR1 791 845 -732 1072 150 20 15 chr4 13401896 13402096 -188926251 + MSTB LTR MaLR 1 201 -225 336 115 33 16 chr4 13402096 13402157 -188926190 + AluS SINE Alu 1 62 -246 225 173 39 19 chr4 13402258 13402310 -188926037 - L1P LINE L1 -1142 5004 4952 1934 169 0 3 chr4 13402334 13402647 -188925700 + AluJo SINE Alu 1 312 0 244 236 179 32 chr4 13402977 13403100 -188925247 - L1P LINE L1 -2322 3824 3684 1523 283 54 16 chr4 13403231 13403676 -188924671 + LTR16B LTR ERVL 3 464 0 1968 103 4 21 chr4 13403716 13403997 -188924350 + AluSc SINE Alu 1 276 -33 1248 0 0 0 chr4 13404267 13404402 -188923945 + AluYb8 SINE Alu 179 313 -5 971 283 134 31 chr4 13404670 13405183 -188923164 - L2 LINE L2 -422 2892 2327 8142 22 0 0 chr4 13405532 13406490 -188921857 - L1PA4 LINE L1 -5 6150 5190 320 0 25 0 chr4 13407082 13407122 -188921225 + (TC)n Simple_repeat Simple_repeat 2 42 0 2554 177 6 47 chr4 13407130 13407600 -188920747 - MLT2B2 LTR ERVL -64 451 1 261 308 70 42 chr4 13407603 13407786 -188920561 - L2 LINE L2 -181 3091 2886 1732 172 0 26 chr4 13407786 13408088 -188920259 + AluJo SINE Alu 1 294 -18 261 308 70 42 chr4 13408088 13408187 -188920160 - L2 LINE L2 -386 2886 2791 221 300 0 0 chr4 13408949 13409029 -188919318 + MIR SINE MIR 183 262 0 222 62 0 0 chr4 13409216 13409248 -188919099 + (TG)n Simple_repeat Simple_repeat 1 32 0 253 286 44 22 chr4 13409322 13409421 -188918926 + MLT1I LTR MaLR 44 133 -276 239 350 117 25 chr4 13409840 13410003 -188918344 - MIR3 SINE MIR -21 187 10 1096 141 12 0 chr4 13410998 13411168 -188917179 - AluSg/x SINE Alu -11 299 128 1387 160 48 111 chr4 13411369 13411701 -188916646 + AluJo SINE Alu 1 311 -1 1335 198 171 56 chr4 13412001 13412451 -188915896 - MLT1D LTR MaLR -3 502 1 558 209 87 51 chr4 13412886 13413140 -188915207 + L1MC5 LINE L1 7644 7906 -55 24 53 0 0 chr4 13413386 13413424 -188914923 + AT_rich Low_complexity Low_complexity 1 38 0 482 228 117 21 chr4 13413803 13413948 -188914399 - MIR SINE MIR -38 224 66 995 181 98 5 chr4 13414033 13414238 -188914109 + AluJb SINE Alu 2 225 -87 7588 53 3 3 chr4 13414250 13415196 -188913151 + L1PA7 LINE L1 5209 6154 0 548 114 13 0 chr4 13416009 13416088 -188912259 + MADE1 DNA Mariner 1 80 0 567 283 148 70 chr4 13416088 13416404 -188911943 - MLT1G1 LTR MaLR -71 484 130 1655 223 128 38 chr4 13416404 13416443 -188911904 - MLT2B1 LTR ERVL 0 520 486 441 54 0 0 chr4 13416443 13416499 -188911848 + (TG)n Simple_repeat Simple_repeat 2 57 0 1655 223 128 38 chr4 13416499 13416934 -188911413 - MLT2B1 LTR ERVL -34 486 3 567 283 148 70 chr4 13416934 13417022 -188911325 - MLT1G1 LTR MaLR -425 130 50 267 342 24 13 chr4 13417069 13417186 -188911161 + MER5A DNA MER1_type 59 169 -9 385 262 106 14 chr4 13417425 13417566 -188910781 - L1MC3 LINE L1 -3 7782 7629 216 174 0 82 chr4 13417620 13417718 -188910629 + (TATAA)n Simple_repeat Simple_repeat 4 93 0 1694 209 48 15 chr4 13417719 13418025 -188910322 - L1MD3 LINE L1 -162 7833 7510 210 118 0 0 chr4 13418025 13418059 -188910288 + (CATAT)n Simple_repeat Simple_repeat 4 37 0 1694 209 48 15 chr4 13418059 13418149 -188910198 - L1MD3 LINE L1 -485 7510 7424 578 202 28 0 chr4 13418149 13418258 -188910089 - MLT1F1 LTR MaLR -420 147 36 24 0 0 0 chr4 13418654 13418678 -188909669 + AT_rich Low_complexity Low_complexity 1 24 0 1277 244 56 44 chr4 13419975 13420405 -188907942 + MLT1C LTR MaLR 17 451 -16 967 229 14 36 chr4 13420675 13420898 -188907449 - MER20 DNA MER1_type -1 218 1 2730 78 91 10 chr4 13421016 13421376 -188906971 + MLT2A1 LTR ERVL 16 412 -32 216 0 0 0 chr4 13421376 13421400 -188906947 + (TA)n Simple_repeat Simple_repeat 2 25 0 2730 78 91 10 chr4 13421400 13421436 -188906911 + MLT2A1 LTR ERVL 412 444 0 320 287 133 0 chr4 13421860 13422003 -188906344 - MER103 DNA DNA -3 163 2 244 347 58 0 chr4 13422190 13422311 -188906036 + MER102b DNA MER1_type 188 315 -26 345 129 0 198 chr4 13422825 13422941 -188905406 + L1MA9 LINE L1 6182 6274 -38 786 295 63 31 chr4 13424433 13424994 -188903353 - L2 LINE L2 -31 3282 2708 182 315 103 48 chr4 13425085 13425231 -188903116 + L2 LINE L2 3111 3264 -8 31 26 0 0 chr4 13426651 13426689 -188901658 + AT_rich Low_complexity Low_complexity 1 38 0 222 318 0 15 chr4 13426824 13426890 -188901457 - MIR SINE MIR -120 142 78 258 250 0 0 chr4 13427185 13427257 -188901090 + CT-rich Low_complexity Low_complexity 1 72 0 285 248 64 46 chr4 13428451 13428560 -188899787 + MIR SINE MIR 20 130 -78 1040 303 96 12 chr4 13428803 13429219 -188899128 - L2 LINE L2 -4 3309 2859 1556 186 17 24 chr4 13431130 13431421 -188896926 + AluJo SINE Alu 1 289 -23 249 33 0 0 chr4 13432546 13432576 -188895771 + (TCCA)n Simple_repeat Simple_repeat 1 30 0 193 378 112 0 chr4 13432577 13432675 -188895672 - L2 LINE L2 -6 3266 3158 217 296 89 45 chr4 13433241 13433420 -188894927 + MIR SINE MIR 56 242 -20 796 287 16 12 chr4 13433557 13433811 -188894536 + MIR SINE MIR 2 256 -6 219 385 18 0 chr4 13434519 13434628 -188893719 + MIR SINE MIR 43 153 -55 290 305 75 80 chr4 13434655 13434855 -188893492 - MIR SINE MIR -18 244 46 207 204 0 0 chr4 13434971 13435020 -188893327 + CT-rich Low_complexity Low_complexity 2 50 0 245 296 108 54 chr4 13435124 13435310 -188893037 + L2 LINE L2 3117 3312 -1 247 339 133 14 chr4 13435344 13435562 -188892785 + L3 LINE CR1 1311 1554 -23 186 246 277 0 chr4 13435619 13435684 -188892663 - L2 LINE L2 -2 3270 3188 350 312 87 35 chr4 13435714 13435887 -188892460 - MIR SINE MIR -27 235 54 206 341 37 30 chr4 13436492 13436557 -188891790 + MIR3 SINE MIR 25 88 -120 2043 196 25 6 chr4 13436557 13436915 -188891432 - MLT1A1 LTR MaLR 0 365 1 206 341 37 30 chr4 13436915 13436984 -188891363 + MIR3 SINE MIR 88 160 -48 297 353 45 7 chr4 13437784 13437951 -188890396 + MIR SINE MIR 64 236 -26 268 360 44 26 chr4 13438368 13438482 -188889865 - L2 LINE L2 -5 3267 3152 268 230 30 60 chr4 13438799 13438899 -188889448 - MIR SINE MIR -112 150 54 271 304 68 48 chr4 13439553 13439803 -188888544 + L2 LINE L2 2507 2761 -553 251 347 8 16 chr4 13439958 13440082 -188888265 + L2 LINE L2 2942 3064 -208 2443 93 3 0 chr4 13440502 13440812 -188887535 + AluSp SINE Alu 1 311 -2 532 329 82 59 chr4 13440867 13441651 -188886696 + L2 LINE L2 563 1364 -1950 2471 58 0 7 chr4 13441753 13442048 -188886299 + AluY SINE Alu 1 293 -18 309 333 26 19 chr4 13442532 13442688 -188885659 + L2 LINE L2 2506 2662 -652 938 142 321 28 chr4 13442711 13442822 -188885525 - Tigger3b DNA MER2_type -1797 1232 1155 2853 107 5 0 chr4 13442822 13443195 -188885152 + THE1C LTR MaLR 1 375 0 938 142 321 28 chr4 13443195 13443301 -188885046 - Tigger3b DNA MER2_type -1874 1155 951 968 106 38 0 chr4 13443309 13443441 -188884906 + L1PA11 LINE L1 6034 6170 -4 189 107 0 0 chr4 13443542 13443570 -188884777 + (TATATG)n Simple_repeat Simple_repeat 1 28 0 264 239 23 23 chr4 13443571 13443659 -188884688 - L1MC4 LINE L1 -1341 6701 6614 237 219 0 83 chr4 13443586 13443682 -188884665 + L1MC4 LINE L1 6615 6702 -1340 * 1413 98 0 25 chr4 13443682 13443885 -188884462 - AluY SINE Alu -113 198 1 4809 132 76 35 chr4 13444266 13444329 -188884018 - Tigger3b DNA MER2_type -2080 948 889 203 61 30 0 chr4 13444329 13444362 -188883985 + (TGAG)n Simple_repeat Simple_repeat 1 34 0 4809 132 76 35 chr4 13444362 13444449 -188883898 - Tigger3b DNA MER2_type -2139 889 807 2178 119 0 17 chr4 13444449 13444744 -188883603 + AluSx SINE Alu 1 290 -22 4809 132 76 35 chr4 13444744 13445296 -188883051 - Tigger3b DNA MER2_type -2221 807 197 2238 117 0 13 chr4 13445296 13445605 -188882742 - AluSq SINE Alu -8 305 1 4809 132 76 35 chr4 13445605 13445811 -188882536 - Tigger3b DNA MER2_type -2831 197 1 2440 118 22 27 chr4 13445839 13446205 -188882142 + THE1B LTR MaLR 1 364 0 12011 95 21 3 chr4 13446205 13447756 -188880591 + THE1B-int LTR MaLR 1 1580 0 978 138 13 7 chr4 13447774 13447926 -188880421 + THE1B LTR MaLR 212 364 0 1318 278 74 15 chr4 13447926 13448465 -188879882 + L2 LINE L2 2731 3313 0 198 304 18 0 chr4 13448511 13448567 -188879780 - L2 LINE L2 0 3313 3257 316 202 31 10 chr4 13448793 13448890 -188879457 - MIR3 SINE MIR -22 186 86 545 317 49 32 chr4 13449657 13449903 -188878444 - MIR SINE MIR -10 252 3 276 246 92 0 chr4 13449903 13449959 -188878388 - L2 LINE L2 -42 3230 3169 2824 276 137 22 chr4 13450295 13451448 -188876899 - L2 LINE L2 -1771 1543 258 318 311 51 50 chr4 13451707 13451961 -188876386 + L2 LINE L2 2798 3053 -219 195 339 119 38 chr4 13452252 13452571 -188875776 + L2 LINE L2 2016 2360 -954 232 187 41 0 chr4 13452583 13452706 -188875641 + (TA)n Simple_repeat Simple_repeat 2 129 0 318 250 21 21 chr4 13452730 13452826 -188875521 + L1MC4 LINE L1 6610 6705 -1337 283 336 259 21 chr4 13452986 13453361 -188874986 + L2 LINE L2 2807 3270 -2 1531 140 19 30 chr4 13453372 13453636 -188874711 - Tigger2 DNA MER2_type -10 2708 2448 38 22 0 0 chr4 13453665 13453710 -188874637 + AT_rich Low_complexity Low_complexity 1 45 0 4571 125 24 36 chr4 13453716 13454483 -188873864 - Tigger2 DNA MER2_type -1961 757 1 2637 50 0 0 chr4 13454964 13455264 -188873083 + AluY SINE Alu 1 300 -11 279 206 27 41 chr4 13455282 13455355 -188872992 - MIR SINE MIR -108 154 83 2153 101 7 0 chr4 13455660 13455947 -188872400 + AluSq SINE Alu 1 289 -24 26 30 0 0 chr4 13457493 13457526 -188870821 + AT_rich Low_complexity Low_complexity 1 33 0 186 43 0 0 chr4 13457877 13457900 -188870447 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 595 290 75 23 chr4 13457970 13458184 -188870163 + MIR SINE MIR 20 244 -18 413 167 0 12 chr4 13458233 13458317 -188870030 + CT-rich Low_complexity Low_complexity 4 86 0 426 195 0 0 chr4 13458320 13458402 -188869945 - Cheshire DNA MER1_type -266 2154 2073 287 136 99 0 chr4 13458377 13458458 -188869889 - Cheshire DNA MER1_type -2265 155 67 * 1609 180 19 60 chr4 13458465 13458711 -188869636 - MLT1A1 LTR MaLR -12 353 125 2771 98 20 3 chr4 13458711 13459067 -188869280 + THE1B LTR MaLR 3 364 0 1609 180 19 60 chr4 13459067 13459186 -188869161 - MLT1A1 LTR MaLR -240 125 3 424 74 0 0 chr4 13459206 13459260 -188869087 + MER57A LTR ERV1 1 54 -349 1917 123 57 92 chr4 13459260 13459649 -188868698 - THE1C LTR MaLR 0 375 1 1640 77 5 14 chr4 13459649 13459870 -188868477 - THE1C-int LTR MaLR 0 1580 1362 1022 198 80 0 chr4 13459884 13460121 -188868226 + Cheshire DNA MER1_type 130 2419 -1 185 288 75 38 chr4 13460522 13460602 -188867745 + L2 LINE L2 3223 3305 -8 1663 228 42 5 chr4 13461178 13461560 -188866787 - MSTD LTR MaLR 0 396 1 528 245 0 0 chr4 13461604 13462086 -188866261 + (CA)n Simple_repeat Simple_repeat 1 482 0 399 316 102 27 chr4 13462193 13462418 -188865929 - MIR SINE MIR -19 243 2 210 216 0 0 chr4 13462781 13462855 -188865492 + (CA)n Simple_repeat Simple_repeat 2 75 0 433 300 14 38 chr4 13463323 13463533 -188864814 + MIR SINE MIR 58 262 0 233 325 125 0 chr4 13463765 13463845 -188864502 - L2 LINE L2 -19 3253 3164 11859 179 7 10 chr4 13463845 13466934 -188861413 - L1P3 LINE L1 -2782 3679 582 13888 26 1 0 chr4 13466934 13469342 -188859005 + L1PA3 LINE L1 3746 6155 0 11859 179 7 10 chr4 13469342 13469921 -188858426 - L1P3 LINE L1 -5879 582 3 371 263 75 15 chr4 13469968 13470101 -188858246 + MIR SINE MIR 40 180 -82 304 333 33 25 chr4 13470376 13470541 -188857806 + MIR SINE MIR 19 180 -28 197 250 50 0 chr4 13471192 13471252 -188857095 + MIR SINE MIR 179 241 -21 388 216 43 150 chr4 13471723 13471977 -188856370 - L2 LINE L2 -6 3307 3081 904 152 129 5 chr4 13471983 13472200 -188856147 - L1MC2 LINE L1 -2 6342 6099 2259 82 0 4 chr4 13472209 13472515 -188855832 - AluSc SINE Alu 0 305 1 257 277 176 48 chr4 13472675 13472964 -188855383 + LTR16C LTR ERVL 151 476 -15 345 269 99 50 chr4 13472966 13473107 -188855240 + MIR SINE MIR 114 261 -1 411 309 22 29 chr4 13473164 13473303 -188855044 - MIR SINE MIR -65 197 60 266 279 58 39 chr4 13473364 13473468 -188854879 - MIR SINE MIR -71 137 32 607 209 43 139 chr4 13474364 13474622 -188853725 - MIR SINE MIR -19 243 11 253 286 42 67 chr4 13474626 13474745 -188853602 - MIR3 SINE MIR -23 185 70 213 284 23 0 chr4 13475115 13475203 -188853144 + (TG)n Simple_repeat Simple_repeat 2 91 0 247 397 116 29 chr4 13475664 13475906 -188852441 - L2 LINE L2 0 3272 3010 21 0 0 0 chr4 13477575 13477596 -188850751 + AT_rich Low_complexity Low_complexity 1 21 0 437 292 76 67 chr4 13477953 13478285 -188850062 + L1MEc LINE L1 1412 1801 -775 199 403 0 0 chr4 13478994 13479066 -188849281 + L2 LINE L2 3134 3205 -67 211 291 51 13 chr4 13479263 13479342 -188849005 + L2 LINE L2 3176 3257 -56 221 297 102 47 chr4 13481507 13481635 -188846712 - L2 LINE L2 -1 3271 3137 287 381 114 19 chr4 13481872 13482250 -188846097 - L2 LINE L2 -650 2664 2251 298 276 13 0 chr4 13482293 13482369 -188845978 - LTR16C LTR ERVL -222 269 193 233 242 30 61 chr4 13482577 13482643 -188845704 - L2 LINE L2 0 3272 3209 2035 120 10 29 chr4 13483441 13483749 -188844598 + AluSx SINE Alu 1 302 -10 201 269 260 39 chr4 13483860 13483964 -188844383 + MIR SINE MIR 9 135 -127 355 353 53 38 chr4 13484029 13484369 -188843978 + L2 LINE L2 1550 1894 -1420 470 261 36 26 chr4 13485267 13485462 -188842885 - HAL1 LINE L1 -78 2429 2233 324 179 0 0 chr4 13485515 13485582 -188842765 - MER116 DNA Mariner 0 80 14 32 43 0 0 chr4 13485717 13485763 -188842584 + AT_rich Low_complexity Low_complexity 1 46 0 2239 130 11 0 chr4 13485763 13486116 -188842231 - L1PB4 LINE L1 -7 6852 6496 198 0 0 0 chr4 13486116 13486138 -188842209 + (TG)n Simple_repeat Simple_repeat 2 23 0 207 204 0 0 chr4 13486211 13486255 -188842092 + (CATA)n Simple_repeat Simple_repeat 3 46 0 7445 217 27 90 chr4 13486257 13488028 -188840319 - L1PB4 LINE L1 -367 6492 4611 397 57 0 0 chr4 13488028 13488081 -188840266 - MADE1 DNA Mariner 0 80 28 7445 217 27 90 chr4 13488081 13488256 -188840091 - L1PB4 LINE L1 -2248 4611 4427 369 94 0 47 chr4 13488256 13488320 -188840027 - MADE1 DNA Mariner -17 63 3 7445 217 27 90 chr4 13488320 13490158 -188838189 - L1PB4 LINE L1 -2432 4427 2848 253 266 110 0 chr4 13490228 13490337 -188838010 - L1PB4 LINE L1 -4004 2845 2725 687 254 106 72 chr4 13490374 13490726 -188837621 - L1PB4 LINE L1 -525 2685 2311 1748 217 43 71 chr4 13490726 13491260 -188837087 - MLT2B1 LTR ERVL 0 520 2 687 254 106 72 chr4 13491260 13491379 -188836968 - L1PB4 LINE L1 -899 2311 2198 342 354 186 7 chr4 13491389 13491976 -188836371 - L1PB4 LINE L1 -1706 1504 813 1751 210 36 20 chr4 13491982 13492372 -188835975 + MSTD LTR MaLR 1 396 0 5467 243 87 34 chr4 13492374 13494021 -188834326 + MSTD-int LTR MaLR 2 1735 0 1145 199 120 38 chr4 13494023 13494211 -188834136 + MSTD LTR MaLR 4 226 -170 1931 150 0 43 chr4 13494211 13494537 -188833810 - AluSx SINE Alu 0 312 1 1145 199 120 38 chr4 13494537 13494639 -188833708 + MSTD LTR MaLR 226 318 -78 242 256 70 0 chr4 13494640 13494726 -188833621 - L1PB4 LINE L1 -2403 807 716 24 32 0 0 chr4 13495112 13495143 -188833204 + AT_rich Low_complexity Low_complexity 1 31 0 662 308 79 31 chr4 13495397 13495877 -188832470 - MLT1J LTR MaLR -8 503 1 41 48 0 0 chr4 13496487 13496549 -188831798 + AT_rich Low_complexity Low_complexity 1 62 0 513 266 118 20 chr4 13496674 13496971 -188831376 - LTR16A LTR ERVL -6 444 119 437 289 53 11 chr4 13497362 13497533 -188830814 + MIR SINE MIR 19 205 -3 195 301 55 0 chr4 13498723 13498796 -188829551 - L2 LINE L2 0 3313 3237 1143 273 101 67 chr4 13499092 13499657 -188828690 - MER45C DNA AcHobo -369 584 1 226 339 120 16 chr4 13500082 13500265 -188828082 + L2 LINE L2 2170 2371 -943 190 175 50 0 chr4 13500359 13500399 -188827948 - L2 LINE L2 -10 3262 3221 500 236 9 155 chr4 13500435 13500686 -188827661 - MIR SINE MIR -19 243 31 1882 135 162 5 chr4 13501040 13501410 -188826937 + MSTA LTR MaLR 1 428 0 333 262 98 11 chr4 13502338 13502521 -188825826 + MLT1K LTR MaLR 376 574 -14 1901 162 0 16 chr4 13502531 13502839 -188825508 + AluJb SINE Alu 1 303 -9 259 151 41 27 chr4 13503296 13503369 -188824978 - L1PA16 LINE L1 0 6166 6093 2080 142 30 38 chr4 13503487 13503854 -188824493 + THE1B LTR MaLR 1 364 0 446 150 0 0 chr4 13504123 13504203 -188824144 - MADE1 DNA Mariner 0 80 1 553 211 0 0 chr4 13504952 13505047 -188823300 - FLAM_A SINE Alu -20 122 28 2592 116 52 10 chr4 13505118 13505525 -188822822 + MSTA LTR MaLR 5 428 0 268 277 75 50 chr4 13505659 13505676 -188822671 + MIR SINE MIR 59 74 -188 1671 236 20 0 chr4 13505676 13506032 -188822315 + MLT1A1 LTR MaLR 3 365 0 268 277 75 50 chr4 13506032 13506173 -188822174 + MIR SINE MIR 74 221 -41 1551 220 96 25 chr4 13506185 13506621 -188821726 - MLT1C LTR MaLR 0 467 1 294 73 0 0 chr4 13507836 13507877 -188820470 + (CA)n Simple_repeat Simple_repeat 1 41 0 428 302 48 8 chr4 13508086 13508212 -188820135 + L3 LINE CR1 1361 1491 -86 21 0 0 0 chr4 13508214 13508235 -188820112 + AT_rich Low_complexity Low_complexity 1 21 0 5492 113 5 2 chr4 13508235 13509106 -188819241 - L1PB1 LINE L1 -2 6149 5277 203 380 38 0 chr4 13509123 13509202 -188819145 - L2 LINE L2 -4 3268 3187 324 291 96 94 chr4 13509773 13510209 -188818138 - MLT1J2 LTR MaLR -13 437 1 561 327 5 53 chr4 13511488 13511500 -188816847 + MIR3 SINE MIR 5 16 -192 2822 201 7 7 chr4 13511500 13512058 -188816289 + MER74A LTR ERVL 1 558 0 561 327 5 53 chr4 13512058 13512253 -188816094 + MIR3 SINE MIR 16 202 -6 387 283 43 0 chr4 13512310 13512402 -188815945 - L2 LINE L2 -9 3263 3168 1082 164 23 9 chr4 13514417 13514631 -188813716 - Tigger1 DNA MER2_type 0 2418 2202 683 189 0 16 chr4 13514627 13514754 -188813593 - Tigger1 DNA MER2_type -2267 151 27 * 864 206 11 16 chr4 13515152 13515336 -188813011 + MER5A DNA MER1_type 3 185 -4 491 322 149 32 chr4 13515765 13516370 -188811977 - L2 LINE L2 -77 3236 2565 799 155 0 63 chr4 13516787 13516929 -188811418 - FLAM_C SINE Alu 0 133 1 1835 152 46 30 chr4 13517158 13517527 -188810820 + THE1C LTR MaLR 1 375 0 6297 133 9 41 chr4 13517527 13518660 -188809687 + THE1C-int LTR MaLR 1 1097 -483 1097 160 176 46 chr4 13518667 13518973 -188809374 + THE1B LTR MaLR 15 360 -4 232 121 69 52 chr4 13518985 13519043 -188809304 + L1ME1 LINE L1 6092 6150 -16 1076 288 199 18 chr4 13519175 13519839 -188808508 - L2 LINE L2 -1496 1818 1035 1360 195 66 31 chr4 13519875 13520224 -188808123 + MLT1A2 LTR MaLR 1 361 -13 767 308 63 61 chr4 13520238 13520663 -188807684 + L2 LINE L2 2888 3313 0 233 284 34 23 chr4 13521687 13521775 -188806572 - L2 LINE L2 -5 3267 3179 208 357 9 45 chr4 13522121 13522233 -188806114 + MIR SINE MIR 37 144 -64 744 221 6 18 chr4 13523358 13523521 -188804826 + MIR SINE MIR 74 234 -28 2156 97 0 0 chr4 13523571 13523838 -188804509 + AluSx SINE Alu 38 304 -8 649 260 85 0 chr4 13524376 13524553 -188803794 + MIR SINE MIR 71 262 0 38 68 0 0 chr4 13524556 13524629 -188803718 + AT_rich Low_complexity Low_complexity 1 73 0 2455 44 30 0 chr4 13525015 13525310 -188803037 + AluY SINE Alu 1 304 -7 3132 135 18 71 chr4 13525925 13526404 -188801943 - L1MB7 LINE L1 0 6184 5748 2512 68 0 3 chr4 13526404 13526714 -188801633 - AluY SINE Alu -2 309 1 3132 135 18 71 chr4 13526714 13526893 -188801454 - L1MB7 LINE L1 -436 5748 5561 194 311 48 99 chr4 13526942 13527126 -188801221 - L2 LINE L2 -829 2485 2320 1977 175 7 0 chr4 13527126 13527435 -188800912 - AluSx SINE Alu -1 311 1 194 311 48 99 chr4 13527435 13527543 -188800804 - L2 LINE L2 -994 2320 2208 359 265 0 31 chr4 13527979 13528077 -188800270 + L2 LINE L2 3213 3307 -6 2506 60 3 0 chr4 13528172 13528474 -188799873 + AluY SINE Alu 1 303 -8 390 232 36 0 chr4 13528611 13528723 -188799624 + MER103 DNA DNA 8 123 -43 245 233 0 0 chr4 13528772 13528815 -188799532 + (CGTG)n Simple_repeat Simple_repeat 1 43 0 218 326 109 14 chr4 13529751 13529889 -188798458 + MIR SINE MIR 103 253 -9 263 164 73 0 chr4 13530153 13530208 -188798139 - MLT1K LTR MaLR 0 588 530 2159 137 0 0 chr4 13530224 13530537 -188797810 + AluSq SINE Alu 1 313 0 368 322 15 49 chr4 13530653 13530858 -188797489 - MLT1K LTR MaLR -166 422 225 316 333 164 12 chr4 13531260 13531425 -188796922 - MIR3 SINE MIR 0 208 19 239 298 60 71 chr4 13532980 13533148 -188795199 + MIR SINE MIR 19 184 -78 645 236 111 10 chr4 13533178 13533386 -188794961 + MIR SINE MIR 21 249 -13 4280 248 62 41 chr4 13534436 13537868 -188790479 + L1MA9 LINE L1 357 3436 -2598 225 236 18 0 chr4 13537869 13537924 -188790423 + (TA)n Simple_repeat Simple_repeat 1 56 0 314 290 0 21 chr4 13537924 13538017 -188790330 + L1MC4 LINE L1 6613 6703 -1339 432 279 0 0 chr4 13538024 13538196 -188790151 + (TA)n Simple_repeat Simple_repeat 1 172 0 245 315 0 11 chr4 13538199 13538377 -188789970 + (TATG)n Simple_repeat Simple_repeat 2 177 0 241 318 0 0 chr4 13538384 13538450 -188789897 + (TATATG)n Simple_repeat Simple_repeat 3 68 0 321 309 0 0 chr4 13538456 13538631 -188789716 + (TA)n Simple_repeat Simple_repeat 2 176 0 7661 183 32 23 chr4 13538655 13540973 -188787374 + L1MA9 LINE L1 3467 5796 -404 1064 293 77 9 chr4 13540973 13541652 -188786695 - L2 LINE L2 -22 3291 2560 296 324 163 76 chr4 13541660 13541992 -188786355 + L3 LINE CR1 589 891 -686 2286 114 0 0 chr4 13541992 13542299 -188786048 + AluSx SINE Alu 1 307 -5 296 324 163 76 chr4 13542299 13542556 -188785791 + L3 LINE CR1 891 1229 -348 352 68 0 108 chr4 13542597 13542671 -188785676 + MER41A LTR ERV1 401 466 -88 365 333 86 20 chr4 13542682 13542880 -188785467 + L3 LINE CR1 1266 1476 -101 197 362 29 0 chr4 13545250 13545319 -188783028 + L2 LINE L2 3201 3271 -1 480 301 54 46 chr4 13546745 13546984 -188781363 + MIR SINE MIR 22 262 0 320 295 36 72 chr4 13546977 13547116 -188781231 - MIR SINE MIR -108 154 21 * 2129 127 7 0 chr4 13547920 13548220 -188780127 + AluSq SINE Alu 1 302 -11 255 61 0 0 chr4 13548820 13548853 -188779494 + (TC)n Simple_repeat Simple_repeat 2 34 0 252 184 0 118 chr4 13548856 13548932 -188779415 - U6 snRNA snRNA -3 104 38 419 174 0 0 chr4 13548936 13549005 -188779342 - U6 snRNA snRNA -37 70 2 710 328 36 4 chr4 13549184 13549437 -188778910 - MIR SINE MIR -1 261 1 3218 190 36 88 chr4 13549708 13551080 -188777267 - L1ME2 LINE L1 -11 6153 4843 352 199 55 75 chr4 13551129 13551275 -188777072 - L1ME2 LINE L1 -2290 3856 3714 185 323 21 43 chr4 13551766 13551859 -188776488 + L3 LINE CR1 1473 1563 -14 409 376 41 5 chr4 13552328 13552522 -188775825 - MIR3 SINE MIR -4 204 4 1009 285 36 18 chr4 13552860 13552943 -188775404 - LTR16C LTR ERVL -7 484 404 1114 181 123 77 chr4 13552943 13553292 -188775055 - MLT1A1 LTR MaLR 0 365 1 1009 285 36 18 chr4 13553292 13553541 -188774806 - LTR16C LTR ERVL -87 404 146 201 154 0 0 chr4 13554005 13554044 -188774303 + (TTTAA)n Simple_repeat Simple_repeat 4 42 0 201 270 114 93 chr4 13554253 13554490 -188773857 + MIR3 SINE MIR 2 243 -19 188 277 0 0 chr4 13554491 13554538 -188773809 - L2 LINE L2 -4 3268 3222 464 286 107 40 chr4 13554950 13555303 -188773044 + LTR16A1 LTR ERVL 73 457 0 537 259 0 44 chr4 13555441 13555599 -188772748 - L2 LINE L2 0 3313 3163 2586 100 5 19 chr4 13555781 13556150 -188772197 + THE1B LTR MaLR 1 364 0 884 246 120 22 chr4 13556201 13556354 -188771993 - MLT1F1 LTR MaLR 0 567 430 207 69 0 0 chr4 13556354 13556383 -188771964 + (CTGGGG)n Simple_repeat Simple_repeat 4 32 0 884 246 120 22 chr4 13556383 13556586 -188771761 - MLT1F1 LTR MaLR -137 430 176 273 128 0 0 chr4 13556586 13556633 -188771714 + (GGGAA)n Simple_repeat Simple_repeat 4 50 0 326 296 53 13 chr4 13556659 13556811 -188771536 - MLT1F1 LTR MaLR -435 158 1 217 281 4 16 chr4 13557303 13557375 -188770972 + MIR SINE MIR 68 140 -68 2355 99 0 0 chr4 13557427 13557731 -188770616 + AluSp SINE Alu 1 304 -9 1834 175 5 72 chr4 13558419 13558837 -188769510 + MLT1B LTR MaLR 1 390 0 230 355 136 24 chr4 13558943 13559184 -188769163 - L2 LINE L2 -256 3057 2801 243 357 64 35 chr4 13559604 13559775 -188768572 + L2 LINE L2 2992 3167 -105 1660 246 53 9 chr4 13559864 13560394 -188767953 + L1ME1 LINE L1 5623 6159 -7 3109 100 9 0 chr4 13561590 13562020 -188766327 + MER57B LTR ERV1 1 434 0 430 267 55 89 chr4 13562040 13562242 -188766105 - MIR3 SINE MIR -10 198 4 2561 137 108 12 chr4 13563007 13563498 -188764849 - L1PA16 LINE L1 -6 6160 5623 1671 129 4 0 chr4 13563498 13563777 -188764570 + L1PA16 LINE L1 5318 5597 -569 3344 53 0 12 chr4 13563797 13564227 -188764120 - L1PA7 LINE L1 -8 6146 5722 421 318 33 47 chr4 13564828 13564889 -188763458 - L2 LINE L2 -556 2758 2698 1725 178 0 32 chr4 13564889 13565204 -188763143 + AluJo SINE Alu 1 305 -7 421 318 33 47 chr4 13565204 13565353 -188762994 - L2 LINE L2 -616 2698 2551 200 318 16 0 chr4 13566261 13566324 -188762023 + MIR SINE MIR 79 142 -120 274 336 8 67 chr4 13566498 13566632 -188761715 + MIR SINE MIR 20 145 -63 11044 204 36 30 chr4 13566989 13571425 -188756922 - L1MA9 LINE L1 -10 6538 2055 449 283 45 30 chr4 13571944 13572201 -188756146 - L1MA9 LINE L1 -5716 597 267 1933 126 73 22 chr4 13572330 13572687 -188755660 + THE1C LTR MaLR 1 375 0 2286 94 0 0 chr4 13572771 13573069 -188755278 + AluSg1 SINE Alu 1 298 -11 203 0 37 0 chr4 13573072 13573099 -188755248 + (TAA)n Simple_repeat Simple_repeat 2 29 0 209 239 30 30 chr4 13573159 13573226 -188755121 - L2 LINE L2 -5 3267 3201 716 282 5 5 chr4 13573958 13574146 -188754201 - MIR SINE MIR -71 191 4 202 354 90 45 chr4 13574218 13574396 -188753951 - L2 LINE L2 -16 3256 3071 217 364 91 0 chr4 13574412 13574522 -188753825 - MIR SINE MIR -64 144 25 228 384 30 8 chr4 13574564 13574697 -188753650 + MIR3 SINE MIR 73 208 0 795 267 58 30 chr4 13575280 13575711 -188752636 + MLT1C LTR MaLR 16 467 0 396 194 42 42 chr4 13576205 13576344 -188752003 - MLT1J1 LTR MaLR -265 246 69 638 226 0 0 chr4 13576524 13576657 -188751690 + FLAM_C SINE Alu 1 133 -10 2496 57 0 0 chr4 13576734 13577030 -188751317 + AluY SINE Alu 1 296 -15 305 305 138 12 chr4 13577342 13577509 -188750838 - MIR SINE MIR -24 238 51 191 347 67 0 chr4 13578987 13579062 -188749285 - MIR SINE MIR -142 120 41 200 289 60 36 chr4 13580041 13580124 -188748223 + L2 LINE L2 3183 3267 -5 221 119 24 0 chr4 13581816 13581858 -188746489 + (TA)n Simple_repeat Simple_repeat 2 44 0 307 313 87 26 chr4 13582992 13583107 -188745240 - L2 LINE L2 0 3272 3151 26 0 0 0 chr4 13583520 13583546 -188744801 + AT_rich Low_complexity Low_complexity 1 26 0 189 301 36 0 chr4 13584110 13584193 -188744154 + L2 LINE L2 2929 3014 -258 1787 171 121 16 chr4 13584355 13584742 -188743605 - MSTA LTR MaLR 0 428 1 5531 113 10 2 chr4 13584774 13585654 -188742693 - L1PA13 LINE L1 0 6163 5277 212 244 0 0 chr4 13586660 13586705 -188741642 + GA-rich Low_complexity Low_complexity 5 49 0 274 364 70 7 chr4 13586788 13586931 -188741416 - MIR SINE MIR -12 250 99 811 292 117 3 chr4 13587193 13587570 -188740777 + LTR33A LTR ERVL 104 523 0 433 248 62 16 chr4 13588061 13588190 -188740157 - L2 LINE L2 -1 3271 3137 206 356 11 22 chr4 13588605 13588695 -188739652 + MIR SINE MIR 17 105 -157 23 33 0 0 chr4 13588987 13589017 -188739330 + AT_rich Low_complexity Low_complexity 1 30 0 289 183 33 0 chr4 13589852 13589912 -188738435 + MLT1K LTR MaLR 5 66 -522 2198 192 42 65 chr4 13590364 13590931 -188737416 + MLT2B3 LTR ERVL 1 554 0 303 301 55 97 chr4 13591496 13591785 -188736562 - L2 LINE L2 -4 3268 2992 2257 115 0 6 chr4 13591882 13592194 -188736153 + AluSx SINE Alu 1 310 -2 340 235 62 0 chr4 13592204 13592285 -188736062 - MIR SINE MIR -75 187 102 1762 102 4 0 chr4 13592368 13592617 -188735730 + AluSq SINE Alu 58 307 0 21 0 0 0 chr4 13593091 13593112 -188735235 + AT_rich Low_complexity Low_complexity 1 21 0 556 217 6 6 chr4 13593527 13593702 -188734645 + (CA)n Simple_repeat Simple_repeat 2 176 0 204 40 0 0 chr4 13593721 13593746 -188734601 + (CA)n Simple_repeat Simple_repeat 2 26 0 287 339 0 0 chr4 13594719 13594849 -188733498 - MER94 DNA DNA -1 133 4 212 238 111 16 chr4 13594853 13594916 -188733431 - MIR SINE MIR -55 153 85 232 263 66 13 chr4 13595404 13595480 -188732867 - MIR SINE MIR -66 196 117 1137 216 21 56 chr4 13595509 13595898 -188732449 + MLT2C1 LTR ERVL 13 462 -2 2200 96 3 13 chr4 13596141 13596444 -188731903 + AluY SINE Alu 1 300 -11 574 276 28 39 chr4 13596612 13596793 -188731554 + MER8 DNA MER2_type 1 179 -60 2195 84 28 3 chr4 13596918 13597204 -188731143 + AluY SINE Alu 1 293 -18 219 313 148 36 chr4 13598089 13598393 -188729954 + L2 LINE L2 2330 2667 -647 1525 251 126 39 chr4 13598397 13598936 -188729411 + MLT1E LTR MaLR 8 593 0 373 338 121 19 chr4 13599050 13599257 -188729090 - MIR SINE MIR -12 250 23 182 322 61 61 chr4 13600981 13601096 -188727251 - L2 LINE L2 -56 3216 3102 668 263 0 13 chr4 13601421 13601573 -188726774 + FRAM SINE Alu 1 150 -16 336 24 0 0 chr4 13601574 13601615 -188726732 + (CA)n Simple_repeat Simple_repeat 2 42 0 25 51 0 0 chr4 13601697 13601736 -188726611 + AT_rich Low_complexity Low_complexity 1 39 0 257 337 84 45 chr4 13602055 13602364 -188725983 + L2 LINE L2 2944 3264 -8 365 304 58 52 chr4 13602541 13602622 -188725725 + MIR SINE MIR 1 80 -182 1548 181 114 18 chr4 13602622 13602954 -188725393 - MLT1A1 LTR MaLR 0 365 2 365 304 58 52 chr4 13602954 13603124 -188725223 + MIR SINE MIR 80 256 -6 499 291 229 12 chr4 13604059 13604382 -188723965 + L2 LINE L2 2469 2861 -453 287 205 111 17 chr4 13604484 13604601 -188723746 + L1ME4a LINE L1 5976 6103 -18 261 329 0 0 chr4 13604602 13604681 -188723666 + L3 LINE CR1 1264 1342 -235 203 261 22 0 chr4 13604959 13605005 -188723342 + L2 LINE L2 3173 3219 -94 740 283 146 45 chr4 13605020 13605795 -188722552 - L2 LINE L2 -2 3311 2447 192 366 24 0 chr4 13605799 13605881 -188722466 + L2 LINE L2 3230 3313 0 505 242 33 26 chr4 13606058 13606211 -188722136 + MIR SINE MIR 15 168 -94 297 229 19 102 chr4 13606209 13606347 -188722000 + MIR SINE MIR 57 188 -62 * 395 319 39 68 chr4 13608217 13608350 -188719997 + MIR SINE MIR 59 185 -77 1996 157 3 0 chr4 13608350 13608650 -188719697 + AluJb SINE Alu 2 302 -10 395 319 39 68 chr4 13608650 13608723 -188719624 + MIR SINE MIR 185 259 -3 1769 165 43 6 chr4 13608899 13609227 -188719120 + MER2 DNA MER2_type 6 345 0 967 213 70 51 chr4 13609235 13609577 -188718770 + MLT2C1 LTR ERVL 1 423 -41 272 145 0 81 chr4 13609636 13609698 -188718649 + MLT2F LTR ERVL 464 663 0 1547 213 9 81 chr4 13609738 13610184 -188718163 + MLT2D LTR ERVL 1 414 0 430 211 145 18 chr4 13611414 13611580 -188716767 + MER53 DNA DNA 1 187 -2 440 272 190 35 chr4 13611967 13612557 -188715790 + L2 LINE L2 2611 3308 -5 252 263 100 25 chr4 13613058 13613138 -188715209 + MIR SINE MIR 55 140 -68 904 250 111 33 chr4 13613138 13613498 -188714849 - MLT1I LTR MaLR -3 406 19 262 300 25 0 chr4 13613503 13613583 -188714764 + MIR SINE MIR 165 246 -16 282 299 82 48 chr4 13664788 13664935 -188663412 - MIR3 SINE MIR -30 178 27 188 360 70 35 chr4 13666044 13666130 -188662217 + L2 LINE L2 3167 3255 -17 716 61 10 0 chr4 13666178 13666276 -188662071 + (GGGAA)n Simple_repeat Simple_repeat 1 99 0 452 299 102 6 chr4 13667982 13668159 -188660188 - MIR SINE MIR -38 224 31 2409 242 109 27 chr4 13668731 13670051 -188658296 - L1M4c LINE L1 -3465 3179 1708 2473 0 0 11 chr4 13670051 13670324 -188658023 + AluYa5 SINE Alu 39 308 -3 2409 242 109 27 chr4 13670324 13670512 -188657835 - L1M4c LINE L1 -4936 1708 1537 876 179 4 11 chr4 13670544 13670809 -188657538 + CT-rich Low_complexity Low_complexity 1 263 0 5206 240 46 24 chr4 13670810 13672339 -188656008 - L1M4c LINE L1 -4975 1567 6 449 346 33 25 chr4 13672529 13672772 -188655575 + L2 LINE L2 2595 2839 -475 576 312 93 23 chr4 13672872 13673173 -188655174 - L2 LINE L2 0 3313 2992 348 127 0 0 chr4 13673311 13673366 -188654981 + (CA)n Simple_repeat Simple_repeat 2 56 0 600 249 57 62 chr4 13673973 13674182 -188654165 - L2 LINE L2 -1 3312 3105 1162 269 101 20 chr4 13674205 13674611 -188653736 + L1MEc LINE L1 39 477 -5919 1252 292 72 12 chr4 13674612 13675027 -188653320 - L2 LINE L2 -378 2936 2497 582 336 71 28 chr4 13675506 13676072 -188652275 + L1M4 LINE L1 3851 4440 -1706 606 333 91 69 chr4 13676178 13676936 -188651411 - L2 LINE L2 -650 2664 1890 224 245 0 0 chr4 13676957 13677010 -188651337 + A-rich Low_complexity Low_complexity 1 53 0 310 268 28 28 chr4 13677358 13677500 -188650847 - MLT1L LTR MaLR -13 602 461 541 266 118 0 chr4 13678053 13678218 -188650129 - MER112 DNA MER1_type -4 256 55 254 29 29 0 chr4 13678218 13678253 -188650094 + (TG)n Simple_repeat Simple_repeat 2 37 0 541 266 118 0 chr4 13678253 13678316 -188650031 - MER112 DNA MER1_type -205 55 1 1602 229 9 0 chr4 13678534 13678884 -188649463 - MLT1A1 LTR MaLR -12 353 1 499 295 62 36 chr4 13679342 13679535 -188648812 - MIR SINE MIR -52 210 13 371 279 29 29 chr4 13680098 13680234 -188648113 + MIR SINE MIR 16 151 -57 1067 313 84 45 chr4 13680533 13681422 -188646925 - L2 LINE L2 -1 3312 2366 241 313 69 62 chr4 13681637 13681781 -188646566 + MIR SINE MIR 96 240 -22 351 238 198 0 chr4 13681815 13681916 -188646431 + L2 LINE L2 3193 3313 0 976 102 23 0 chr4 13682316 13682444 -188645903 + AluSq/x SINE Alu 1 131 -181 2226 115 33 36 chr4 13682679 13683044 -188645303 + THE1B LTR MaLR 1 364 0 247 288 56 8 chr4 13683301 13683426 -188644921 + L1MC5 LINE L1 7663 7793 -168 210 171 0 53 chr4 13683620 13683696 -188644651 + (TTA)n Simple_repeat Simple_repeat 1 72 0 306 291 136 0 chr4 13685297 13685407 -188642940 - L2 LINE L2 0 3272 3148 211 286 100 0 chr4 13685451 13685521 -188642826 + MIR SINE MIR 89 165 -97 2389 75 3 7 chr4 13686032 13686337 -188642010 + AluY SINE Alu 1 304 -7 183 42 0 0 chr4 13686882 13686906 -188641441 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2303 104 3 0 chr4 13688097 13688404 -188639943 + AluY SINE Alu 1 308 -3 318 233 49 86 chr4 13688458 13688621 -188639726 + MER112 DNA MER1_type 1 157 -103 2289 102 3 3 chr4 13688688 13688991 -188639356 - AluSg SINE Alu -7 303 1 256 278 183 9 chr4 13689039 13689154 -188639193 - L2 LINE L2 -9 3263 3129 1389 136 62 4 chr4 13689294 13689567 -188638780 - L1MA7 LINE L1 0 6291 6003 335 217 189 9 chr4 13689770 13689876 -188638471 - MIR SINE MIR -71 191 67 212 389 25 12 chr4 13690873 13691035 -188637312 - L2 LINE L2 -554 2760 2597 1745 252 19 36 chr4 13691057 13691581 -188636766 + LTR40a LTR ERVL 5 519 0 211 321 0 0 chr4 13692374 13692458 -188635889 - L2 LINE L2 -925 2389 2306 268 267 199 7 chr4 13692539 13692685 -188635662 - L2 LINE L2 -1218 2096 1923 4850 192 9 30 chr4 13692770 13694392 -188633955 - L1PA16 LINE L1 -7 6159 4584 8101 77 4 2 chr4 13694392 13696261 -188632086 + L1PA7 LINE L1 4283 6154 0 4850 192 9 30 chr4 13696261 13696377 -188631970 - L1PA16 LINE L1 -1582 4584 4467 3273 200 10 0 chr4 13696378 13697084 -188631263 + L1PA16 LINE L1 3737 4449 -1697 989 258 62 11 chr4 13697387 13697740 -188630607 - L1MEc LINE L1 -5989 407 37 991 325 59 60 chr4 13697773 13698502 -188629845 + L2 LINE L2 2230 2957 -357 329 197 0 0 chr4 13698503 13698574 -188629773 + MER96 DNA MER1_type? 105 175 0 909 210 119 62 chr4 13699470 13699855 -188628492 - MLT1I LTR MaLR -2 407 1 2169 108 0 3 chr4 13699868 13700155 -188628192 - AluSg SINE Alu -24 286 1 194 236 11 39 chr4 13700178 13700360 -188627987 + GA-rich Low_complexity Low_complexity 1 177 0 504 283 72 6 chr4 13700419 13700585 -188627762 + MIR SINE MIR 82 258 -4 202 257 71 29 chr4 13700655 13700725 -188627622 - MIR SINE MIR -106 156 84 2279 109 0 0 chr4 13701312 13701616 -188626731 + AluSx SINE Alu 3 306 -6 22 0 0 0 chr4 13702280 13702302 -188626045 + AT_rich Low_complexity Low_complexity 1 22 0 398 257 29 0 chr4 13702734 13702839 -188625508 + MIR SINE MIR 40 147 -115 2109 146 0 37 chr4 13703077 13703427 -188624920 + MER1B DNA MER1_type 1 337 0 486 238 61 17 chr4 13703790 13703971 -188624376 - L1M4 LINE L1 -966 5180 4992 242 158 49 98 chr4 13703966 13704048 -188624299 - L1MA10 LINE L1 0 6334 6257 * 225 282 14 0 chr4 13704049 13704120 -188624227 + CT-rich Low_complexity Low_complexity 3 74 0 2192 143 0 0 chr4 13704586 13704894 -188623453 + AluSq SINE Alu 1 308 -5 230 303 104 17 chr4 13704894 13705135 -188623212 - L1ME4a LINE L1 -44 6077 5816 260 306 56 56 chr4 13705217 13705361 -188622986 + L2 LINE L2 2823 2966 -306 211 269 202 0 chr4 13705919 13706023 -188622324 - MIR3 SINE MIR -1 207 83 248 319 80 64 chr4 13706223 13706474 -188621873 - L2 LINE L2 -4 3268 3014 427 290 106 57 chr4 13706536 13706751 -188621596 - MIR SINE MIR -31 231 10 237 303 124 68 chr4 13706861 13707095 -188621252 - L2 LINE L2 -182 3090 2844 371 259 108 27 chr4 13707129 13707498 -188620849 - MLT1G1 LTR MaLR -4 544 119 14349 206 35 11 chr4 13707747 13710692 -188617655 - L1PA15 LINE L1 -2 6814 3940 2445 81 0 0 chr4 13710692 13711000 -188617347 - AluY SINE Alu -3 308 1 14349 206 35 11 chr4 13711000 13711484 -188616863 - L1PA15 LINE L1 -2876 3940 3469 243 0 0 0 chr4 13711484 13711511 -188616836 + (TTG)n Simple_repeat Simple_repeat 1 27 0 14349 206 35 11 chr4 13711511 13713479 -188614868 - L1PA15 LINE L1 -3347 3469 1269 2541 285 11 25 chr4 13713551 13714278 -188614069 - L1PA15 LINE L1 -6070 717 1 443 157 0 14 chr4 13714786 13714856 -188613491 + MLT1C LTR MaLR 399 467 0 * 506 168 53 0 chr4 13714856 13714949 -188613398 + Charlie7 DNA MER1_type 592 689 -1923 233 197 17 154 chr4 13714951 13715068 -188613279 + Charlie7 DNA MER1_type 2496 2596 -16 449 135 54 0 chr4 13715396 13715470 -188612877 - MLT1C LTR MaLR -101 366 289 456 302 127 24 chr4 13715716 13715921 -188612426 - MIR SINE MIR -17 245 20 2916 140 16 7 chr4 13715921 13716372 -188611975 + L1PA15 LINE L1 5710 6164 -1 461 279 188 10 chr4 13716880 13717077 -188611270 + MIR SINE MIR 21 252 -10 229 305 0 0 chr4 13717909 13717968 -188610379 + C-rich Low_complexity Low_complexity 1 59 0 488 237 51 46 chr4 13718414 13718593 -188609754 - MIR3 SINE MIR -63 145 3 414 259 124 91 chr4 13718648 13719034 -188609313 + L2 LINE L2 2914 3312 -1 242 73 44 59 chr4 13719034 13719102 -188609245 + (CAAAT)n Simple_repeat Simple_repeat 1 67 0 266 242 47 62 chr4 13719190 13719318 -188609029 - MIR SINE MIR -44 218 93 1769 160 3 20 chr4 13719330 13719624 -188608723 - AluJo SINE Alu -20 292 4 338 353 100 13 chr4 13719630 13719780 -188608567 + MIR3 SINE MIR 31 193 -15 189 344 31 31 chr4 13720007 13720103 -188608244 - MIR SINE MIR -63 199 104 274 257 40 40 chr4 13720229 13720330 -188608017 - MLT2E LTR ERVL -489 139 39 * 276 78 0 59 chr4 13720284 13720335 -188608012 - MLT1J LTR MaLR -366 145 98 333 0 0 0 chr4 13720710 13720747 -188607600 + (TC)n Simple_repeat Simple_repeat 2 38 0 260 196 149 56 chr4 13721194 13721301 -188607046 - MIR3 SINE MIR -3 205 89 185 333 105 9 chr4 13721472 13721586 -188606761 - MIR SINE MIR -67 141 17 188 234 43 0 chr4 13722114 13722161 -188606186 + MIR3 SINE MIR 112 160 -48 291 298 0 12 chr4 13722628 13722712 -188605635 + L2 LINE L2 3186 3268 -4 273 364 10 0 chr4 13722814 13722913 -188605434 - L2 LINE L2 0 3272 3173 354 360 17 34 chr4 13723261 13723555 -188604792 - L2 LINE L2 -929 2385 2097 205 350 70 20 chr4 13723647 13723747 -188604600 + L2 LINE L2 3125 3229 -43 240 219 55 27 chr4 13723765 13723838 -188604509 + L3 LINE CR1 1147 1221 -356 270 287 138 42 chr4 13723932 13724001 -188604346 + L3 LINE CR1 1393 1454 -123 2831 106 3 13 chr4 13724001 13724380 -188603967 - THE1C LTR MaLR 0 375 1 270 287 138 42 chr4 13724380 13724477 -188603870 + L3 LINE CR1 1454 1575 -2 200 265 206 0 chr4 13724876 13724944 -188603403 + MIR SINE MIR 163 244 -18 197 356 23 53 chr4 13725065 13725197 -188603150 - L2 LINE L2 -7 3306 3179 373 350 24 0 chr4 13726846 13726969 -188601378 - MER5A DNA MER1_type -3 186 61 1811 167 20 0 chr4 13727043 13727336 -188601011 + AluSx SINE Alu 1 299 -13 773 106 0 8 chr4 13727336 13727459 -188600888 + (GGAGA)n Simple_repeat Simple_repeat 3 124 0 245 186 85 0 chr4 13727610 13727669 -188600678 - MIR SINE MIR -108 154 91 1542 262 116 30 chr4 13727696 13728052 -188600295 + L2 LINE L2 2240 2564 -749 1758 208 30 24 chr4 13728052 13728422 -188599925 - MLT1A2 LTR MaLR -2 372 1 1542 262 116 30 chr4 13728422 13729063 -188599284 + L2 LINE L2 2564 3312 -1 256 325 32 57 chr4 13729190 13729313 -188599034 + L2 LINE L2 3150 3269 -3 324 297 198 24 chr4 13729488 13729700 -188598647 + MIR SINE MIR 14 262 0 1177 91 3 20 chr4 13729997 13730338 -188598009 + (GAAA)n Simple_repeat Simple_repeat 1 336 0 609 308 165 10 chr4 13730968 13731380 -188596967 + L2 LINE L2 2837 3312 -1 248 298 75 17 chr4 13732138 13732265 -188596082 + MIR SINE MIR 18 145 -63 23 0 0 0 chr4 13732435 13732458 -188595889 + AT_rich Low_complexity Low_complexity 1 23 0 262 253 89 13 chr4 13732870 13732949 -188595398 + L2 LINE L2 3200 3284 -29 194 272 64 81 chr4 13733092 13733265 -188595082 - L2 LINE L2 -299 2973 2804 1512 214 59 15 chr4 13733510 13733902 -188594445 + L1M4 LINE L1 2611 3019 -3127 9391 160 23 6 chr4 13733910 13734613 -188593734 + L1PA13 LINE L1 3709 4398 -1765 189 0 0 0 chr4 13734613 13734634 -188593713 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 9391 160 23 6 chr4 13734634 13736350 -188591997 + L1PA13 LINE L1 4398 6157 -6 528 214 8 40 chr4 13736398 13736524 -188591823 + L1MDa LINE L1 34 155 -6385 * 1218 209 110 25 chr4 13736518 13736882 -188591465 + L1MDa LINE L1 957 1351 -5189 1126 227 23 0 chr4 13736914 13737130 -188591217 + MER58A DNA MER1_type 1 221 -3 338 226 49 39 chr4 13737130 13737232 -188591115 + L1MDa LINE L1 3448 3550 -2990 1580 224 61 3 chr4 13737236 13737579 -188590768 - MLT1A1 LTR MaLR 0 365 3 488 238 54 20 chr4 13737580 13737727 -188590620 + L1ME2 LINE L1 6008 6159 -5 1122 246 28 108 chr4 13737727 13738102 -188590245 + L2 LINE L2 2708 2997 -316 2180 101 0 14 chr4 13738102 13738425 -188589922 - AluSx SINE Alu 0 319 1 1122 246 28 108 chr4 13738425 13738719 -188589628 + L2 LINE L2 2997 3313 0 3361 153 32 3 chr4 13738861 13739362 -188588985 - L1MA5 LINE L1 -2 6298 5778 339 25 0 0 chr4 13739362 13739402 -188588945 + (TG)n Simple_repeat Simple_repeat 2 41 0 3361 153 32 3 chr4 13739402 13739468 -188588879 - L1MA5 LINE L1 -522 5778 5715 935 198 14 10 chr4 13739518 13739725 -188588622 - L1MA5 LINE L1 -905 5241 5034 13968 198 39 23 chr4 13739730 13744061 -188584286 - L1M2 LINE L1 -586 6776 2372 357 159 0 0 chr4 13744062 13744125 -188584222 + (TA)n Simple_repeat Simple_repeat 2 64 0 252 0 0 0 chr4 13744125 13744153 -188584194 + (TG)n Simple_repeat Simple_repeat 2 29 0 459 0 0 0 chr4 13744153 13744204 -188584143 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 2413 73 0 0 chr4 13744204 13744490 -188583857 - L1PA7 LINE L1 -17 6137 5852 1112 64 0 0 chr4 13744492 13744633 -188583714 + L1PA7 LINE L1 5682 5822 -332 * 3162 190 20 12 chr4 13744627 13745275 -188583072 - L1M2 LINE L1 -4804 2405 1753 1868 290 9 69 chr4 13745505 13746175 -188582172 - L1M2 LINE L1 -6566 643 14 21 0 0 0 chr4 13746442 13746463 -188581884 + AT_rich Low_complexity Low_complexity 1 21 0 1032 230 5 0 chr4 13747851 13748055 -188580292 - MER3 DNA MER1_type 0 209 5 728 226 56 64 chr4 13748208 13748380 -188579967 + MIR SINE MIR 12 183 -79 390 21 0 0 chr4 13748380 13748427 -188579920 + (TA)n Simple_repeat Simple_repeat 1 47 0 728 226 56 64 chr4 13748427 13748488 -188579859 + MIR SINE MIR 183 243 -19 2106 129 10 7 chr4 13749172 13749481 -188578866 + AluSx SINE Alu 1 310 -2 3104 70 18 2 chr4 13749825 13750226 -188578121 + L1PA8 LINE L1 5766 6172 0 1448 138 17 0 chr4 13750236 13750475 -188577872 + L1MA7 LINE L1 6046 6288 -3 831 264 60 90 chr4 13750516 13750917 -188577430 - L2 LINE L2 -1 3312 2924 1107 211 35 0 chr4 13750951 13751179 -188577168 + Charlie1 DNA MER1_type 1 236 -2525 1402 133 49 61 chr4 13751288 13751552 -188576795 + L1MA9 LINE L1 6048 6308 -4 235 319 9 35 chr4 13751552 13751665 -188576682 - MIR3 SINE MIR -98 110 1 2268 139 16 40 chr4 13751821 13752194 -188576153 - THE1B LTR MaLR 0 364 1 1901 204 161 2 chr4 13753311 13753719 -188574628 + MLT2B1 LTR ERVL 1 487 -33 396 0 0 0 chr4 13753719 13753763 -188574584 + (TG)n Simple_repeat Simple_repeat 2 45 0 1901 204 161 2 chr4 13753763 13753801 -188574546 + MLT2B1 LTR ERVL 487 518 -2 1774 159 0 0 chr4 13753825 13754096 -188574251 - AluJb SINE Alu -17 295 25 629 150 174 54 chr4 13754341 13754508 -188573839 - MER3 DNA MER1_type -22 187 1 451 282 86 12 chr4 13755536 13755699 -188572648 - L2 LINE L2 -1 3312 3138 3973 125 40 12 chr4 13755714 13756315 -188572032 + MER51A LTR ERV1 1 618 -16 227 282 27 87 chr4 13756338 13756487 -188571860 - L2 LINE L2 -180 3133 2994 7497 24 0 0 chr4 13756910 13757769 -188570578 - L1PA4 LINE L1 -1385 4761 3903 8117 26 0 1 chr4 13757769 13759125 -188569222 + L1PA4 LINE L1 4790 6147 -8 215 73 49 0 chr4 13759137 13759178 -188569169 + A-rich Low_complexity Low_complexity 2 44 0 247 289 7 22 chr4 13760107 13760242 -188568105 + GA-rich Low_complexity Low_complexity 3 135 0 819 172 107 2 chr4 13762076 13762300 -188566047 - L1MA5A LINE L1 -23 6280 6011 2105 93 0 34 chr4 13764263 13764578 -188563769 - AluSq SINE Alu 0 306 2 246 322 81 0 chr4 13764862 13764949 -188563398 + MIR3 SINE MIR 87 180 -28 778 139 24 2 chr4 13766580 13766761 -188561586 + L1MB3 LINE L1 5255 5443 -722 2262 150 12 28 chr4 13766773 13767200 -188561147 + L1MB3 LINE L1 5756 6175 -8 267 189 0 0 chr4 13768550 13768603 -188559744 + G-rich Low_complexity Low_complexity 3 55 0 1949 146 76 95 chr4 13768954 13769082 -188559265 + MLT1D LTR MaLR 1 130 -375 2552 163 21 2 chr4 13769082 13769500 -188558847 + MSTB LTR MaLR 1 426 0 1949 146 76 95 chr4 13769500 13769886 -188558461 + MLT1D LTR MaLR 130 505 0 302 244 100 93 chr4 13769916 13770153 -188558194 + MLT1J LTR MaLR 231 472 -39 1587 194 17 92 chr4 13770153 13770623 -188557724 - MER63B DNA MER1_type -1 435 1 302 244 100 93 chr4 13770623 13770664 -188557683 + MLT1J LTR MaLR 472 511 0 317 313 77 62 chr4 13770786 13770994 -188557353 - MIR SINE MIR -30 232 22 197 213 21 0 chr4 13771013 13771060 -188557287 + L2 LINE L2 3258 3305 -8 240 340 187 18 chr4 13771958 13772455 -188555892 - L2 LINE L2 -459 2855 2275 181 267 0 0 chr4 13772506 13772551 -188555796 + L2 LINE L2 3269 3313 0 2363 185 75 2 chr4 13772635 13773077 -188555270 + MLT2B2 LTR ERVL 1 482 -33 488 16 16 0 chr4 13773077 13773138 -188555209 + (TCTA)n Simple_repeat Simple_repeat 1 62 0 2363 185 75 2 chr4 13773138 13773175 -188555172 + MLT2B2 LTR ERVL 482 515 0 342 313 56 20 chr4 13773778 13773973 -188554374 + L1ME4a LINE L1 5707 5908 -213 1760 159 28 7 chr4 13774487 13774777 -188553570 - AluSx SINE Alu -16 296 1 1149 293 93 16 chr4 13775202 13775687 -188552660 + LTR67 LTR ERVL 36 557 0 377 305 141 23 chr4 13776716 13776844 -188551503 - MIR3 SINE MIR -46 162 20 433 316 127 5 chr4 13779178 13779390 -188548957 - MIR SINE MIR -5 257 20 293 323 89 38 chr4 13779504 13779662 -188548685 - MER5A DNA MER1_type -6 183 18 442 236 97 28 chr4 13779748 13779892 -188548455 + MLT1L LTR MaLR 6 159 -456 195 42 0 0 chr4 13779942 13779966 -188548381 + (CA)n Simple_repeat Simple_repeat 1 24 0 200 57 0 29 chr4 13779987 13780022 -188548325 + (TTAAA)n Simple_repeat Simple_repeat 4 37 0 315 237 86 32 chr4 13780026 13780119 -188548228 + MER5B DNA MER1_type 81 178 0 921 268 55 28 chr4 13780125 13780487 -188547860 + MLT1L LTR MaLR 169 540 -75 2197 103 11 0 chr4 13780511 13780793 -188547554 - AluSx SINE Alu -27 285 1 779 254 43 35 chr4 13781045 13781277 -188547070 - MIR SINE MIR 0 262 29 519 309 96 5 chr4 13781695 13781915 -188546432 + MIR SINE MIR 23 262 0 187 351 0 0 chr4 13781919 13781976 -188546371 + L2 LINE L2 3201 3257 -15 180 205 0 0 chr4 13782650 13782689 -188545658 - MIR SINE MIR -110 152 114 193 268 0 0 chr4 13782792 13782833 -188545514 + MER5A DNA MER1_type 149 189 0 254 306 73 8 chr4 13782853 13782977 -188545370 - MIR3 SINE MIR -70 138 7 196 325 29 86 chr4 13783022 13783231 -188545116 - L2 LINE L2 -1 3271 3075 511 273 105 50 chr4 13783593 13784175 -188544172 + L1ME4a LINE L1 5494 6107 -14 335 341 41 8 chr4 13784476 13784599 -188543748 + MIR SINE MIR 35 161 -101 1991 189 114 16 chr4 13784601 13785093 -188543254 - MLT1F LTR MaLR -1 541 2 483 257 28 21 chr4 13785219 13785363 -188542984 - MIR3 SINE MIR -49 159 15 423 274 0 11 chr4 13786569 13786664 -188541683 + MER91B DNA MER1_type 96 189 -1 227 143 48 0 chr4 13786719 13786761 -188541586 + Charlie8 DNA MER1_type 222 265 -2152 457 337 59 19 chr4 13786857 13787127 -188541220 - L3 LINE CR1 -148 1429 1149 457 245 28 0 chr4 13787196 13787302 -188541045 + MER5A DNA MER1_type 10 118 -71 230 325 83 17 chr4 13787321 13787441 -188540906 - L3 LINE CR1 -579 998 871 187 333 50 0 chr4 13787523 13787583 -188540764 + L2 LINE L2 3188 3250 -22 31 0 0 0 chr4 13787623 13787654 -188540693 + AT_rich Low_complexity Low_complexity 1 31 0 322 288 23 8 chr4 13787671 13787803 -188540544 - MLT1K LTR MaLR -116 472 339 182 317 127 21 chr4 13789081 13789223 -188539124 + MIR SINE MIR 60 216 -46 229 330 50 40 chr4 13789604 13789704 -188538643 + L2 LINE L2 3141 3241 -31 24 32 0 0 chr4 13789759 13789790 -188538557 + AT_rich Low_complexity Low_complexity 1 31 0 30 0 0 0 chr4 13789838 13789868 -188538479 + AT_rich Low_complexity Low_complexity 1 30 0 257 354 61 0 chr4 13789912 13790011 -188538336 + MIR3 SINE MIR 87 191 -17 216 0 0 0 chr4 13790322 13790346 -188538001 + (A)n Simple_repeat Simple_repeat 1 24 0 190 180 40 40 chr4 13793306 13793356 -188534991 - L2 LINE L2 -1 3271 3222 398 273 74 16 chr4 13795326 13795447 -188532900 + MIR3 SINE MIR 68 195 -13 382 315 35 21 chr4 13796388 13796531 -188531816 + L2 LINE L2 3127 3271 -1 395 154 26 0 chr4 13796861 13796939 -188531408 + (TATG)n Simple_repeat Simple_repeat 2 81 0 198 294 91 35 chr4 13797527 13797670 -188530677 + L2 LINE L2 2420 2570 -744 511 294 41 16 chr4 13798028 13798222 -188530125 + MIR SINE MIR 2 200 -62 198 231 39 19 chr4 13798550 13798602 -188529745 + L2 LINE L2 3214 3266 -6 243 0 0 0 chr4 13798709 13798736 -188529611 + (CA)n Simple_repeat Simple_repeat 2 28 0 31 0 0 0 chr4 13799720 13799751 -188528596 + AT_rich Low_complexity Low_complexity 1 31 0 200 344 22 0 chr4 13799972 13800062 -188528285 - L3b LINE CR1 -389 1194 1103 6614 254 128 15 chr4 13800422 13801869 -188526478 - L2 LINE L2 -405 2909 1150 2199 110 10 3 chr4 13801869 13802169 -188526178 + AluSg1 SINE Alu 1 302 -7 6614 254 128 15 chr4 13802169 13802817 -188525530 - L2 LINE L2 -2164 1150 577 379 250 214 42 chr4 13803422 13803926 -188524421 + L1ME4a LINE L1 5352 5942 -179 330 335 68 15 chr4 13803927 13804074 -188524273 + MIR SINE MIR 16 168 -40 226 263 40 0 chr4 13804141 13804217 -188524130 + L1ME4a LINE L1 5965 6043 -78 28 61 0 0 chr4 13804231 13804280 -188524067 + AT_rich Low_complexity Low_complexity 1 49 0 537 245 117 27 chr4 13804628 13804816 -188523531 + MIR SINE MIR 58 262 0 2386 101 0 3 chr4 13805634 13805940 -188522407 - AluSx SINE Alu -7 305 1 200 35 35 0 chr4 13805941 13805970 -188522377 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 28 0 0 0 chr4 13806218 13806246 -188522101 + AT_rich Low_complexity Low_complexity 1 28 0 332 218 0 0 chr4 13806429 13806484 -188521863 - L2 LINE L2 -4 3268 3214 343 0 0 0 chr4 13806487 13806527 -188521820 + THE1B LTR MaLR 1 40 -335 1409 131 5 5 chr4 13806529 13806751 -188521596 + THE1B LTR MaLR 11 232 -132 1190 216 72 0 chr4 13806751 13807015 -188521332 + L1PA13 LINE L1 450 732 -6055 * 7339 177 49 1 chr4 13807009 13807313 -188521034 + L1PA13 LINE L1 944 1232 -5565 198 0 0 0 chr4 13807313 13807335 -188521012 + (CTG)n Simple_repeat Simple_repeat 2 23 0 7339 177 49 1 chr4 13807335 13808736 -188519611 + L1PA13 LINE L1 1232 2754 -4043 1580 174 29 6 chr4 13808744 13809089 -188519258 + L1 LINE L1 4929 5281 -865 5689 114 24 0 chr4 13809089 13810198 -188518149 + L1PA13 LINE L1 5031 6161 -2 819 236 121 25 chr4 13810265 13810705 -188517642 + Charlie7 DNA MER1_type 778 1259 -1353 3687 193 34 12 chr4 13811125 13812415 -188515932 + L1MB2 LINE L1 4807 6171 0 521 207 103 11 chr4 13812471 13812645 -188515702 - L1MC5 LINE L1 -48 7913 7724 11288 59 1 38 chr4 13812721 13815030 -188513317 + L1PA6 LINE L1 3862 6141 -13 331 162 73 0 chr4 13815514 13815582 -188512765 - L1M2 LINE L1 -759 5541 5469 * 491 89 13 0 chr4 13815572 13815651 -188512696 + L1MA8 LINE L1 6090 6169 -122 * 940 123 0 0 chr4 13815650 13815805 -188512542 + L1MA8 LINE L1 6106 6260 -31 422 241 83 9 chr4 13815808 13815916 -188512431 + MIR SINE MIR 122 237 -25 202 333 66 71 chr4 13816107 13816290 -188512057 - L2 LINE L2 -182 3090 2909 349 297 50 30 chr4 13816857 13816958 -188511389 - L2 LINE L2 -4 3268 3166 2117 148 6 26 chr4 13817149 13817493 -188510854 - MER1B DNA MER1_type 0 337 1 375 360 34 7 chr4 13817678 13817825 -188510522 - L2 LINE L2 -556 2758 2608 316 321 107 12 chr4 13817828 13817996 -188510351 - MIR SINE MIR -43 219 36 23 33 0 0 chr4 13818957 13818987 -188509360 + AT_rich Low_complexity Low_complexity 1 30 0 384 248 85 0 chr4 13820067 13820208 -188508139 + L1ME3A LINE L1 5796 5948 -222 230 231 66 33 chr4 13820273 13820364 -188507983 + L1ME3A LINE L1 5971 6064 -106 21 57 0 0 chr4 13820435 13820470 -188507877 + AT_rich Low_complexity Low_complexity 1 35 0 2499 57 0 0 chr4 13821437 13821734 -188506613 + AluY SINE Alu 1 297 -14 592 274 139 19 chr4 13821924 13822132 -188506215 - MIR SINE MIR -22 240 8 843 286 98 25 chr4 13822141 13822620 -188505727 - L1ME3 LINE L1 -248 5914 5401 593 288 134 23 chr4 13822639 13823458 -188504889 - L1ME3 LINE L1 -780 5366 4457 * 5574 236 67 42 chr4 13823452 13824265 -188504082 - L1ME3 LINE L1 -1947 4199 3408 1482 84 5 14 chr4 13824265 13824480 -188503867 + L1PA7 LINE L1 5940 6152 -2 5574 236 67 42 chr4 13824480 13825653 -188502694 - L1ME3 LINE L1 -2738 3408 2162 1035 238 70 46 chr4 13825656 13825721 -188502626 - MER58B DNA MER1_type -2079 341 279 1672 174 3 3 chr4 13825721 13826033 -188502314 - AluJb SINE Alu 0 314 3 1035 238 70 46 chr4 13826033 13826294 -188502053 - MER58B DNA MER1_type -2141 279 6 232 213 16 16 chr4 13826305 13826366 -188501981 + L2 LINE L2 2727 2787 -527 2114 99 7 0 chr4 13827038 13827344 -188501003 + AluSp SINE Alu 1 308 0 24 77 0 0 chr4 13828822 13828874 -188499473 + AT_rich Low_complexity Low_complexity 1 52 0 12630 86 6 11 chr4 13828949 13831515 -188496832 - L1PA7 LINE L1 -8 6146 3592 25 51 0 0 chr4 13831929 13831968 -188496379 + AT_rich Low_complexity Low_complexity 1 39 0 950 327 21 28 chr4 13832350 13832778 -188495569 - MLT2F LTR ERVL -238 425 1 2130 135 122 13 chr4 13832798 13833184 -188495163 + MSTA LTR MaLR 1 428 0 24 0 0 0 chr4 13833472 13833496 -188494851 + AT_rich Low_complexity Low_complexity 1 24 0 557 306 127 39 chr4 13833839 13834280 -188494067 + HAL1 LINE L1 1243 1722 -785 26 88 0 0 chr4 13834613 13834681 -188493666 + AT_rich Low_complexity Low_complexity 1 68 0 397 274 124 71 chr4 13835856 13836421 -188491926 + HAL1b LINE L1 8 602 -746 421 326 93 21 chr4 13837291 13837776 -188490571 + L1M4 LINE L1 3374 3893 -2253 470 338 73 17 chr4 13837783 13838070 -188490277 + L1M4 LINE L1 3920 4222 -1924 3937 130 61 36 chr4 13838161 13839097 -188489250 + pTR5 LTR ERV1 741 2021 -417 404 238 10 0 chr4 13839098 13839199 -188489148 + LTR30 LTR ERV1 541 642 -80 1669 79 7 4 chr4 13839202 13839438 -188488909 + pTR5 LTR ERV1 172 495 -219 238 290 112 41 chr4 13841366 13841535 -188486812 - MLT1K LTR MaLR -338 250 70 4186 193 8 11 chr4 13842502 13843328 -188485019 + L1PA15 LINE L1 5341 6164 -1 297 324 183 0 chr4 13843836 13843978 -188484369 + MIR SINE MIR 21 188 -74 1419 213 95 32 chr4 13844229 13844661 -188483686 + LTR2B LTR ERV1 32 490 0 519 330 87 33 chr4 13844670 13845245 -188483102 - L1MEc LINE L1 -5760 636 31 6469 185 37 29 chr4 13845481 13847336 -188481011 + L1P3 LINE L1 530 2415 -4046 28 0 0 0 chr4 13847640 13847668 -188480679 + AT_rich Low_complexity Low_complexity 1 28 0 311 236 0 0 chr4 13847851 13847906 -188480441 - L2 LINE L2 -4 3268 3214 359 0 0 0 chr4 13847909 13847949 -188480398 + THE1B LTR MaLR 1 40 -324 1492 131 5 5 chr4 13847951 13848173 -188480174 + THE1B LTR MaLR 11 232 -132 1269 214 48 8 chr4 13848173 13848425 -188479922 + L1PA13 LINE L1 450 711 -6076 903 257 66 12 chr4 13850493 13850734 -188477613 + MIR SINE MIR 9 262 0 32 103 0 0 chr4 13850795 13850911 -188477436 + AT_rich Low_complexity Low_complexity 1 116 0 5659 210 20 2 chr4 13852026 13853223 -188475124 - L1P LINE L1 -1751 4395 3178 2211 98 0 28 chr4 13853228 13853545 -188474802 - AluSx SINE Alu -3 309 2 250 322 81 0 chr4 13853829 13853916 -188474431 + MIR3 SINE MIR 87 180 -28 24 77 0 0 chr4 13855185 13855237 -188473110 + AT_rich Low_complexity Low_complexity 1 52 0 6558 81 14 0 chr4 13855313 13856424 -188471923 - L1PA7 LINE L1 -9 6145 5031 1175 207 43 29 chr4 13856424 13856772 -188471575 - L1 LINE L1 -865 5281 4929 507 283 49 101 chr4 13857197 13857483 -188470864 + L2 LINE L2 3042 3312 -1 1372 138 17 0 chr4 13857524 13857763 -188470584 - L1MA7 LINE L1 -3 6288 6046 6839 71 7 16 chr4 13857772 13859419 -188468928 - L1PA8 LINE L1 -3 6169 4529 382 350 24 0 chr4 13860855 13860978 -188467369 - MER5A DNA MER1_type -3 186 61 2331 101 0 13 chr4 13861052 13861359 -188466988 + AluSx SINE Alu 1 303 -9 1067 219 4 25 chr4 13861772 13862009 -188466338 - AluJb SINE Alu -77 235 4 346 353 100 13 chr4 13862015 13862165 -188466182 + MIR3 SINE MIR 31 193 -15 197 344 31 31 chr4 13862392 13862488 -188465859 - MIR SINE MIR -63 199 104 271 257 40 40 chr4 13862614 13862715 -188465632 - MLT2E LTR ERVL -489 139 39 * 272 78 0 59 chr4 13862669 13862720 -188465627 - MLT1J LTR MaLR -366 145 98 315 0 0 0 chr4 13863095 13863130 -188465217 + (TC)n Simple_repeat Simple_repeat 2 36 0 253 196 149 56 chr4 13863577 13863684 -188464663 - MIR3 SINE MIR -3 205 89 7125 47 6 9 chr4 13865151 13866453 -188461894 + L1PA6 LINE L1 4854 6154 0 352 211 100 11 chr4 13866695 13866785 -188461562 + MER58B DNA MER1_type 1 98 -243 315 118 8 6 chr4 13866789 13867035 -188461312 + AluSq SINE Alu 1 299 -4 * 1153 178 29 25 chr4 13867025 13867266 -188461081 + MER58B DNA MER1_type 100 341 0 1870 195 74 14 chr4 13867712 13868142 -188460205 - MLT1C LTR MaLR -8 459 4 1540 245 164 23 chr4 13868154 13868722 -188459625 + L2 LINE L2 1389 2036 -1278 282 385 55 0 chr4 13870149 13870258 -188458089 + L2 LINE L2 3154 3268 -4 636 318 89 35 chr4 13870792 13871367 -188456980 + L1MEc LINE L1 460 1065 -5760 1671 191 115 29 chr4 13871376 13871827 -188456520 - LTR2B LTR ERV1 0 490 1 1277 222 58 15 chr4 13872061 13872459 -188455888 + L1MEc LINE L1 1345 4429 -2215 2336 93 0 7 chr4 13872480 13872782 -188455565 - AluSx SINE Alu -12 300 1 2913 199 27 87 chr4 13872802 13873735 -188454612 + L1MEc LINE L1 4624 5500 -1144 346 275 0 0 chr4 13874991 13875082 -188453265 + L1PA15-16 LINE L1 1474 1564 -5285 5404 219 52 16 chr4 13875086 13876784 -188451563 + L1PA16 LINE L1 1355 3105 -3744 5329 133 21 32 chr4 13876807 13877873 -188450474 + L1PA16 LINE L1 5105 6165 -1 * 11165 197 35 18 chr4 13877852 13878273 -188450074 + L1PA16 LINE L1 3077 3489 -3380 2310 110 3 0 chr4 13878273 13878583 -188449764 + AluSx SINE Alu 1 311 -1 11165 197 35 18 chr4 13878583 13881621 -188446726 + L1PA16 LINE L1 3489 6584 -285 3934 180 50 53 chr4 13881809 13882893 -188445454 - L1MB7 LINE L1 -19 6165 5082 1680 170 29 0 chr4 13882893 13883169 -188445178 - AluSx SINE Alu -14 298 15 3934 180 50 53 chr4 13883169 13883260 -188445087 - L1MB7 LINE L1 -1102 5082 4992 586 202 4 19 chr4 13883258 13883385 -188444962 - L1PA16 LINE L1 0 6165 6039 * 27 81 0 0 chr4 13883977 13884039 -188444308 + AT_rich Low_complexity Low_complexity 1 62 0 1215 194 30 11 chr4 13884207 13884475 -188443872 + MLT1B LTR MaLR 1 273 -117 32 103 0 0 chr4 13886067 13886183 -188442164 + AT_rich Low_complexity Low_complexity 1 116 0 882 259 67 13 chr4 13886244 13886483 -188441864 - MIR SINE MIR 0 262 11 2299 99 0 0 chr4 13886716 13887008 -188441339 - AluSc SINE Alu -17 292 1 4283 126 55 57 chr4 13887069 13887555 -188440792 - L1MA9 LINE L1 0 6312 5827 2576 58 0 0 chr4 13887555 13887863 -188440484 - AluY SINE Alu -3 308 1 4283 126 55 57 chr4 13887863 13888266 -188440081 - L1MA9 LINE L1 -485 5827 5425 314 235 217 9 chr4 13888269 13888384 -188439963 + L2 LINE L2 2116 2254 -1060 9438 163 37 40 chr4 13888386 13890351 -188437996 - L1P3 LINE L1 -4467 1994 10 1962 249 65 4 chr4 13890352 13890890 -188437457 + L2 LINE L2 2250 2820 -494 22 0 0 0 chr4 13891138 13891160 -188437187 + AT_rich Low_complexity Low_complexity 1 22 0 186 170 0 85 chr4 13891211 13891258 -188437089 + MIR SINE MIR 220 262 0 347 273 105 47 chr4 13891492 13891664 -188436683 - MIR3 SINE MIR -3 205 24 198 0 0 0 chr4 13892449 13892471 -188435876 + (CAG)n Simple_repeat Simple_repeat 2 23 0 29 60 0 0 chr4 13893561 13893611 -188434736 + AT_rich Low_complexity Low_complexity 1 50 0 443 367 157 14 chr4 13894125 13894669 -188433678 - L2 LINE L2 -87 3226 2601 2681 160 9 65 chr4 13894673 13895570 -188432777 - L1M2 LINE L1 -743 6045 5348 10434 227 34 32 chr4 13895606 13899463 -188428884 - L1M2 LINE L1 -2778 4010 138 548 346 21 16 chr4 13899912 13900155 -188428192 - MIR SINE MIR 0 262 19 21 0 0 0 chr4 13900454 13900475 -188427872 + AT_rich Low_complexity Low_complexity 1 21 0 192 77 0 0 chr4 13901122 13901148 -188427199 + (A)n Simple_repeat Simple_repeat 1 26 0 896 187 50 124 chr4 13901828 13902087 -188426260 + pTR5 LTR ERV1 172 581 -133 506 263 117 9 chr4 13902133 13902346 -188426001 + L1ME2 LINE L1 5878 6113 -51 31237 98 10 11 chr4 13902362 13906906 -188421441 + L1P LINE L1 11 4549 -1597 491 316 91 21 chr4 13907006 13907193 -188421154 - L3b LINE CR1 -98 1485 1286 1536 117 68 42 chr4 13907209 13907472 -188420875 + MER7A DNA MER2_type 1 268 -78 2074 96 47 209 chr4 13907472 13908003 -188420344 + MLT2A2 LTR ERVL 1 445 -8 401 219 49 0 chr4 13908005 13908087 -188420260 + MER7A DNA MER2_type 251 336 -1 884 201 73 14 chr4 13908761 13908980 -188419367 - MLT1A2 LTR MaLR -8 366 135 689 160 0 8 chr4 13908996 13909115 -188419232 - FLAM_C SINE Alu -25 118 1 686 142 8 60 chr4 13909121 13909255 -188419092 - MLT1A2 LTR MaLR -238 127 1 676 282 162 38 chr4 13909726 13910152 -188418195 - L3b LINE CR1 -3 1580 1102 443 240 197 16 chr4 13910426 13910609 -188417738 - MIR SINE MIR 0 262 47 1208 225 102 12 chr4 13910824 13911166 -188417181 + MER63 DNA MER1_type 689 1061 0 414 274 10 10 chr4 13911216 13911318 -188417029 + MIR3 SINE MIR 97 198 -10 240 273 98 70 chr4 13911533 13911676 -188416671 + MIR SINE MIR 20 166 -96 1200 229 0 0 chr4 13911974 13912192 -188416155 + MER58A DNA MER1_type 7 224 0 21 0 0 0 chr4 13912431 13912452 -188415895 + AT_rich Low_complexity Low_complexity 1 21 0 3661 230 80 24 chr4 13912460 13914315 -188414032 + L1MCc LINE L1 1 2505 -4617 4642 188 49 7 chr4 13914317 13914353 -188413994 + L1MA7 LINE L1 4658 4691 -1600 315 0 0 0 chr4 13914353 13914388 -188413959 + (CA)n Simple_repeat Simple_repeat 2 36 0 4642 188 49 7 chr4 13914388 13915920 -188412427 + L1MA7 LINE L1 4691 6291 0 3274 251 83 20 chr4 13915950 13917611 -188410736 + L1MCc LINE L1 2393 4231 -2710 1387 203 35 18 chr4 13918300 13918586 -188409761 - AluJo SINE Alu -19 293 3 884 200 0 0 chr4 13920101 13920261 -188408086 - FRAM SINE Alu -3 163 4 256 232 18 0 chr4 13920686 13920742 -188407605 + L1MB5 LINE L1 6072 6128 -46 807 225 12 0 chr4 13920876 13921036 -188407311 - FRAM SINE Alu -4 162 1 49 43 0 0 chr4 13921086 13921156 -188407191 + AT_rich Low_complexity Low_complexity 1 70 0 21 36 0 0 chr4 13921229 13921257 -188407090 + AT_rich Low_complexity Low_complexity 1 28 0 186 43 0 0 chr4 13921551 13921574 -188406773 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 21 57 0 0 chr4 13922363 13922398 -188405949 + AT_rich Low_complexity Low_complexity 1 35 0 26 50 0 0 chr4 13926273 13926313 -188402034 + AT_rich Low_complexity Low_complexity 1 40 0 23 0 0 0 chr4 13927779 13927802 -188400545 + AT_rich Low_complexity Low_complexity 1 23 0 23 86 0 0 chr4 13928542 13928600 -188399747 + AT_rich Low_complexity Low_complexity 1 58 0 365 236 107 74 chr4 13932183 13932399 -188395948 - MIR SINE MIR -20 242 20 555 243 184 10 chr4 13933738 13933944 -188394403 + Charlie1 DNA MER1_type 1 242 -2519 * 680 176 37 7 chr4 13933927 13934063 -188394284 + Charlie1 DNA MER1_type 2622 2761 0 187 297 22 33 chr4 13934186 13934277 -188394070 - MIR SINE MIR -68 194 105 333 291 111 0 chr4 13934405 13934522 -188393825 + MIR SINE MIR 117 246 -16 202 243 99 42 chr4 13934583 13934663 -188393684 + MIR SINE MIR 69 153 -55 426 413 40 0 chr4 13935698 13935923 -188392424 - L3 LINE CR1 -73 1504 1271 1723 171 0 35 chr4 13935958 13936273 -188392074 + AluJb SINE Alu 2 305 -7 480 239 0 99 chr4 13936274 13936416 -188391931 - L2 LINE L2 -1 3312 3185 1101 193 21 13 chr4 13936421 13936864 -188391483 + MLT1D LTR MaLR 5 505 0 1261 248 40 6 chr4 13937374 13937721 -188390626 - L1ME3 LINE L1 -90 6072 5714 2189 98 7 7 chr4 13938037 13938332 -188390015 + AluSc SINE Alu 1 295 -14 297 135 0 0 chr4 13938332 13938384 -188389963 + (TA)n Simple_repeat Simple_repeat 1 52 0 841 281 131 20 chr4 13938626 13939555 -188388792 + L1P5 LINE L1 4456 5491 -663 650 228 163 125 chr4 13939562 13940212 -188388135 - LTR50 LTR ERVL -16 779 105 782 245 73 77 chr4 13940296 13940367 -188387980 + L1ME3 LINE L1 5489 5559 -603 2107 105 3 6 chr4 13940367 13940680 -188387667 + AluSx SINE Alu 1 312 0 782 245 73 77 chr4 13940680 13940719 -188387628 + L1ME3 LINE L1 5559 5597 -565 2132 108 0 29 chr4 13940719 13941033 -188387314 + AluSx SINE Alu 1 305 -7 782 245 73 77 chr4 13941033 13941386 -188386961 + L1ME3 LINE L1 5597 5951 -211 2030 129 102 58 chr4 13941514 13941924 -188386423 - MSTC LTR MaLR 0 428 1 238 123 88 0 chr4 13943222 13943279 -188385068 + L1M4b LINE L1 1607 1668 -5191 2040 121 4 0 chr4 13943508 13943812 -188384535 - AluSg SINE Alu 0 306 2 2269 256 113 22 chr4 13943822 13944796 -188383551 + L1ME3A LINE L1 4899 5993 -177 258 32 0 0 chr4 13944796 13944827 -188383520 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2269 256 113 22 chr4 13944827 13944993 -188383354 + L1ME3A LINE L1 5993 6142 -28 25 31 0 0 chr4 13944998 13945030 -188383317 + AT_rich Low_complexity Low_complexity 1 32 0 449 271 72 54 chr4 13946532 13946698 -188381649 + MIR SINE MIR 46 214 -48 1010 139 14 43 chr4 13947049 13947219 -188381128 + MLT2C1 LTR ERVL 195 359 -38 318 26 0 0 chr4 13947219 13947258 -188381089 + (CA)n Simple_repeat Simple_repeat 2 40 0 1010 139 14 43 chr4 13947258 13947296 -188381051 + MLT2C1 LTR ERVL 359 397 0 354 314 120 8 chr4 13947820 13947961 -188380386 + MIR SINE MIR 35 188 -49 705 266 67 32 chr4 13948123 13948465 -188379882 + L1MEd LINE L1 904 1257 -4862 189 214 0 0 chr4 13948693 13948735 -188379612 + (TG)n Simple_repeat Simple_repeat 2 43 0 852 214 291 16 chr4 13950011 13950385 -188377962 - MLT1D LTR MaLR -8 497 21 2259 113 0 0 chr4 13950557 13950867 -188377480 + AluSx SINE Alu 3 312 0 448 287 132 57 chr4 13951181 13951652 -188376695 + L1M4 LINE L1 3919 4424 -1722 1076 170 0 0 chr4 13951676 13951841 -188376506 + FRAM SINE Alu 1 163 -13 466 222 144 22 chr4 13951994 13952174 -188376173 + L1M4 LINE L1 4784 4985 -1161 234 289 66 68 chr4 13952439 13952850 -188375497 + L1ME LINE L1 543 952 -5167 1206 206 0 0 chr4 13952850 13953069 -188375278 + AluJo SINE Alu 84 302 -10 261 0 0 0 chr4 13953073 13953102 -188375245 + (CA)n Simple_repeat Simple_repeat 2 30 0 580 263 36 39 chr4 13953103 13953384 -188374963 + L1ME LINE L1 973 1252 -4867 237 254 95 0 chr4 13953410 13953473 -188374874 + AluJ/FLAM SINE Alu 6 74 -228 530 170 94 0 chr4 13953473 13953579 -188374768 + AluJb SINE Alu 184 299 -13 685 198 117 133 chr4 13954046 13954354 -188373993 + AluJo SINE Alu 1 303 -9 626 229 70 38 chr4 13954368 13954525 -188373822 + FAM SINE Alu 4 165 -10 573 249 29 57 chr4 13954543 13954752 -188373595 + L1ME LINE L1 3858 4060 -2069 448 288 26 34 chr4 13954805 13955072 -188373275 + L1ME LINE L1 4166 4430 -1699 381 288 78 27 chr4 13955142 13955437 -188372910 + L1ME LINE L1 4906 5215 -914 665 333 17 3 chr4 13955520 13955808 -188372539 + L1ME LINE L1 5300 5591 -558 1968 239 52 7 chr4 13955885 13956350 -188371997 - MLT1E3 LTR MaLR 0 624 139 270 254 0 0 chr4 13956399 13956454 -188371893 - MLT1E3 LTR MaLR -589 65 11 665 296 69 5 chr4 13956540 13956756 -188371591 - MIR SINE MIR -30 232 3 879 135 6 39 chr4 13957067 13957200 -188371147 + MSTD LTR MaLR 1 130 -266 2363 151 29 7 chr4 13957200 13957617 -188370730 + MSTB LTR MaLR 1 426 0 879 135 6 39 chr4 13957617 13957639 -188370708 + MSTD LTR MaLR 130 151 -245 2272 139 0 0 chr4 13957639 13957985 -188370362 + MSTB-int LTR MaLR 24 369 -1282 2491 193 20 26 chr4 13958014 13958511 -188369836 + MSTB-int LTR MaLR 309 802 -849 1141 105 44 96 chr4 13958512 13958741 -188369606 + AluJo SINE Alu 71 287 -25 1450 220 75 46 chr4 13958807 13959261 -188369086 + MLT1C LTR MaLR 1 467 0 1770 163 35 3 chr4 13959787 13960075 -188368272 + AluJo SINE Alu 2 298 -14 1760 137 60 0 chr4 13960559 13960581 -188367766 - AluSg1 SINE Alu -8 301 282 207 0 0 0 chr4 13960581 13960604 -188367743 + (GA)n Simple_repeat Simple_repeat 1 23 0 1760 137 60 0 chr4 13960604 13960865 -188367482 - AluSg1 SINE Alu -27 282 1 1898 179 105 37 chr4 13961492 13962006 -188366341 + MER34C LTR ERV1 37 585 0 656 336 61 34 chr4 13962006 13962411 -188365936 - LTR16A LTR ERVL -18 439 16 373 323 55 24 chr4 13962435 13962562 -188365785 + MIR SINE MIR 16 146 -62 1896 162 3 3 chr4 13963239 13963541 -188364806 + AluJb SINE Alu 1 302 -10 24 32 0 0 chr4 13963788 13963819 -188364528 + AT_rich Low_complexity Low_complexity 1 31 0 273 56 0 111 chr4 13964411 13964465 -188363882 + FLAM_A SINE Alu 89 133 0 26 74 0 0 chr4 13964836 13964890 -188363457 + AT_rich Low_complexity Low_complexity 1 54 0 213 39 0 0 chr4 13964903 13964929 -188363418 + (TC)n Simple_repeat Simple_repeat 1 26 0 23 0 0 0 chr4 13966341 13966364 -188361983 + AT_rich Low_complexity Low_complexity 1 23 0 546 335 116 0 chr4 13968777 13969010 -188359337 + MIR SINE MIR 2 261 -1 22 56 0 0 chr4 13969682 13969718 -188358629 + AT_rich Low_complexity Low_complexity 1 36 0 225 263 88 12 chr4 13971923 13972003 -188356344 + MER5A DNA MER1_type 15 100 -89 181 215 108 21 chr4 13972118 13972211 -188356136 - MIR SINE MIR -93 169 69 235 296 49 0 chr4 13973255 13973336 -188355011 - L2 LINE L2 -6 3307 3223 355 383 52 13 chr4 13973340 13973570 -188354777 + MIR SINE MIR 15 253 -9 222 299 83 25 chr4 13974775 13974910 -188353437 - MIR SINE MIR -104 104 9 556 281 167 10 chr4 13975090 13975282 -188353065 - MIR SINE MIR -34 228 7 745 249 110 19 chr4 13975458 13975667 -188352680 - MIR SINE MIR -12 250 23 333 164 0 0 chr4 13977511 13977566 -188350781 + MIR SINE MIR 75 129 -133 181 0 69 0 chr4 13977614 13977643 -188350704 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 274 246 79 61 chr4 13977768 13977882 -188350465 + MIR3 SINE MIR 71 186 -22 314 283 48 0 chr4 13978509 13978641 -188349706 + MIR SINE MIR 48 185 -67 396 0 0 0 chr4 13978755 13978799 -188349548 + (TG)n Simple_repeat Simple_repeat 2 45 0 334 324 118 15 chr4 13979258 13979462 -188348885 - MIR SINE MIR -12 250 26 207 191 0 0 chr4 13979634 13979676 -188348671 + MIR SINE MIR 99 140 -68 257 304 234 5 chr4 13979732 13979916 -188348431 + MIR SINE MIR 32 257 -5 202 194 337 0 chr4 13980469 13980567 -188347780 + L2 LINE L2 3175 3305 -8 25 0 0 0 chr4 13980890 13980915 -188347432 + AT_rich Low_complexity Low_complexity 1 25 0 2130 105 0 41 chr4 13981609 13981924 -188346423 - AluSc SINE Alu -4 305 4 180 258 212 0 chr4 13981971 13982037 -188346310 - L2 LINE L2 -5 3267 3188 254 301 0 0 chr4 13982177 13982260 -188346087 + C-rich Low_complexity Low_complexity 1 83 0 216 0 0 0 chr4 13983885 13983909 -188344438 + (T)n Simple_repeat Simple_repeat 1 24 0 241 262 49 0 chr4 13984323 13984384 -188343963 - MIR SINE MIR -82 126 63 292 216 0 0 chr4 13985811 13985862 -188342485 + MIR SINE MIR 93 143 -65 681 64 45 0 chr4 13987076 13987186 -188341161 + CT-rich Low_complexity Low_complexity 4 118 0 198 167 0 0 chr4 13987186 13987222 -188341125 + (CA)n Simple_repeat Simple_repeat 1 36 0 220 301 133 0 chr4 13987349 13987432 -188340915 + MIR3 SINE MIR 99 192 -16 204 118 40 40 chr4 13987619 13987695 -188340652 + GA-rich Low_complexity Low_complexity 2 77 0 607 226 54 11 chr4 13990486 13990672 -188337675 - MER91A DNA MER1_type 0 196 3 223 239 14 0 chr4 13991116 13991187 -188337160 + (CCG)n Simple_repeat Simple_repeat 3 74 0 21 71 0 0 chr4 13992787 13992829 -188335518 + GC_rich Low_complexity Low_complexity 1 42 0 25 65 0 0 chr4 13993025 13993071 -188335276 + GC_rich Low_complexity Low_complexity 1 46 0 203 147 0 0 chr4 13993638 13993672 -188334675 + (CGG)n Simple_repeat Simple_repeat 1 34 0 23 0 0 0 chr4 13996145 13996168 -188332179 + GC_rich Low_complexity Low_complexity 1 23 0 214 200 0 27 chr4 13996270 13996345 -188332002 + CT-rich Low_complexity Low_complexity 1 73 0 193 286 104 13 chr4 13996723 13996800 -188331547 + MIR3 SINE MIR 86 169 -39 21 36 0 0 chr4 13997106 13997134 -188331213 + AT_rich Low_complexity Low_complexity 1 28 0 289 211 133 70 chr4 13997150 13997278 -188331069 - MIR SINE MIR -10 252 117 236 268 134 0 chr4 13997691 13997773 -188330574 + MIR3 SINE MIR 79 171 -37 2171 113 0 0 chr4 13998227 13998553 -188329794 - AluSq SINE Alu 0 326 1 2043 102 26 0 chr4 13998646 13998912 -188329435 - AluSx SINE Alu -37 275 3 798 334 86 40 chr4 13999178 13999361 -188328986 - L2 LINE L2 -27 3286 3113 7411 164 35 0 chr4 13999361 14001495 -188326852 + L1PA13 LINE L1 4022 6163 0 798 334 86 40 chr4 14001495 14001651 -188326696 - L2 LINE L2 -200 3113 2966 1158 165 101 141 chr4 14001651 14002026 -188326321 + MLT1A1 LTR MaLR 4 363 -2 798 334 86 40 chr4 14002026 14002394 -188325953 - L2 LINE L2 -347 2966 2529 3761 154 42 1 chr4 14002425 14002923 -188325424 - L1MB3 LINE L1 -16 6167 5634 423 0 0 0 chr4 14002923 14002970 -188325377 + (TG)n Simple_repeat Simple_repeat 2 48 0 3761 154 42 1 chr4 14002970 14003144 -188325203 - L1MB3 LINE L1 -549 5634 5468 2386 162 0 44 chr4 14003144 14003604 -188324743 - L1MB2 LINE L1 0 6171 5718 376 214 10 20 chr4 14003615 14003713 -188324634 + L1MA8 LINE L1 5905 6001 -290 379 266 0 0 chr4 14004141 14004220 -188324127 + MIR SINE MIR 70 148 -114 443 182 0 0 chr4 14004225 14004302 -188324045 + MLT1F LTR MaLR 1 77 -465 2139 165 19 9 chr4 14004302 14004733 -188323614 - L1MB2 LINE L1 -446 5725 5291 * 6250 35 4 0 chr4 14004715 14004851 -188323496 - L1PA5 LINE L1 0 6154 6019 2324 233 40 18 chr4 14004851 14005605 -188322742 - L1MA1 LINE L1 -269 6033 5201 1740 318 61 31 chr4 14005623 14006538 -188321809 - L2 LINE L2 -810 2504 1562 325 177 0 0 chr4 14006573 14006635 -188321712 - L1ME LINE L1 -5103 967 906 522 227 45 53 chr4 14006710 14006766 -188321581 + MER113 DNA MER1_type? 160 215 -306 1554 222 10 3 chr4 14006766 14007063 -188321284 + AluJo SINE Alu 1 299 -13 522 227 45 53 chr4 14007063 14007084 -188321263 + MER113 DNA MER1_type? 215 235 -286 1582 188 44 7 chr4 14007084 14007377 -188320970 + AluJo SINE Alu 1 304 -8 522 227 45 53 chr4 14007377 14007545 -188320802 + MER113 DNA MER1_type? 235 404 -117 918 230 14 9 chr4 14007547 14007769 -188320578 + L1ME3A LINE L1 5651 5873 -297 403 219 14 0 chr4 14007781 14007854 -188320493 + L2 LINE L2 3237 3310 -3 218 323 141 0 chr4 14007843 14007942 -188320405 - MIR SINE MIR -57 205 93 * 2179 124 35 32 chr4 14008860 14009232 -188319115 - THE1C LTR MaLR -2 373 1 2414 93 3 0 chr4 14009538 14009838 -188318509 - AluSc SINE Alu -8 301 1 1108 254 163 3 chr4 14009917 14010433 -188317914 + LTR50 LTR ERVL 1 684 -111 2067 163 48 11 chr4 14010461 14010835 -188317512 - MSTD LTR MaLR 0 396 9 495 263 145 0 chr4 14011491 14011677 -188316670 + HAL1 LINE L1 1673 1885 -622 870 256 48 23 chr4 14011910 14011984 -188316363 + L1ME4a LINE L1 5129 5200 -962 345 24 0 0 chr4 14011984 14012026 -188316321 + (TG)n Simple_repeat Simple_repeat 2 43 0 870 256 48 23 chr4 14012026 14012434 -188315913 + L1ME4a LINE L1 5200 5631 -531 26 0 0 0 chr4 14012754 14012780 -188315567 + AT_rich Low_complexity Low_complexity 1 26 0 390 212 65 12 chr4 14012780 14012950 -188315397 + L1ME4a LINE L1 5786 5964 -206 1099 68 0 8 chr4 14013083 14013215 -188315132 - AluY SINE Alu -180 131 1 1939 254 92 24 chr4 14013289 14013962 -188314385 + HsTC2c DNA Tc2 4 722 -7 315 258 104 18 chr4 14013969 14014132 -188314215 + L1ME4a LINE L1 5939 6115 -6 2024 132 0 0 chr4 14014148 14014451 -188313896 - AluSx SINE Alu 0 306 4 230 344 65 11 chr4 14014570 14014663 -188313684 + MIR SINE MIR 45 142 -66 405 228 53 9 chr4 14014788 14014902 -188313445 + MER103 DNA DNA 3 121 -45 198 338 28 14 chr4 14015705 14015776 -188312571 + MIR SINE MIR 21 92 -116 404 243 48 42 chr4 14016202 14016356 -188311991 - MER20B DNA MER1_type -21 198 41 3098 121 23 0 chr4 14016692 14017172 -188311175 - L1PA16 LINE L1 -261 5905 5415 23 0 0 0 chr4 14017473 14017496 -188310851 + AT_rich Low_complexity Low_complexity 1 23 0 26 30 0 0 chr4 14018236 14018269 -188310078 + AT_rich Low_complexity Low_complexity 1 33 0 377 301 24 16 chr4 14019054 14019177 -188309170 + MIR SINE MIR 23 146 -62 303 268 84 17 chr4 14019689 14019868 -188308479 - MER112 DNA MER1_type -65 195 5 415 289 44 15 chr4 14019873 14020008 -188308339 + L2 LINE L2 3133 3271 -1 409 272 184 7 chr4 14020357 14020504 -188307843 + MER5A DNA MER1_type 9 181 -8 209 296 204 9 chr4 14020517 14020625 -188307722 + MIR SINE MIR 106 234 -28 382 313 191 16 chr4 14021818 14022138 -188306209 + L3 LINE CR1 711 1086 -491 429 138 0 0 chr4 14022138 14022218 -188306129 + (TCTA)n Simple_repeat Simple_repeat 2 81 0 1991 159 0 0 chr4 14022246 14022548 -188305799 - AluSx SINE Alu -10 302 1 26 0 0 0 chr4 14022550 14022576 -188305771 + AT_rich Low_complexity Low_complexity 1 26 0 811 137 24 0 chr4 14022576 14022700 -188305647 - FLAM_A SINE Alu -6 127 1 381 277 245 18 chr4 14022778 14023056 -188305291 + L3 LINE CR1 1230 1570 -7 2468 77 0 10 chr4 14023632 14023943 -188304404 - AluSg SINE Alu -2 308 1 27 0 0 0 chr4 14024090 14024117 -188304230 + AT_rich Low_complexity Low_complexity 1 27 0 1987 127 10 14 chr4 14024117 14024408 -188303939 - AluJo SINE Alu -22 290 1 234 170 0 0 chr4 14024563 14024610 -188303737 + MER103 DNA DNA 27 73 -93 2337 95 3 0 chr4 14024620 14024924 -188303423 - AluSc SINE Alu -4 305 1 249 241 0 0 chr4 14025609 14025667 -188302680 + CT-rich Low_complexity Low_complexity 1 58 0 23 0 0 0 chr4 14026008 14026031 -188302316 + AT_rich Low_complexity Low_complexity 1 23 0 258 295 279 8 chr4 14026505 14026627 -188301720 + MIR3 SINE MIR 5 159 -49 2271 104 0 7 chr4 14026631 14026930 -188301417 - AluSx SINE Alu -15 297 1 1132 152 71 9 chr4 14027048 14027258 -188301089 + MER46A DNA MER2_type 1 223 -13 944 198 0 0 chr4 14027273 14027440 -188300907 - FRAM SINE Alu -13 163 1 197 305 181 9 chr4 14027473 14027578 -188300769 - MIR SINE MIR -108 154 32 301 273 25 16 chr4 14028307 14028428 -188299919 - L1ME4a LINE L1 -23 6098 5977 420 281 30 55 chr4 14028986 14029185 -188299162 - MIR SINE MIR -44 218 25 1038 238 22 118 chr4 14032265 14032911 -188295436 - Charlie7 DNA MER1_type -1989 623 40 210 282 0 0 chr4 14033088 14033166 -188295181 + GA-rich Low_complexity Low_complexity 1 78 0 378 0 0 0 chr4 14033166 14033208 -188295139 + (TG)n Simple_repeat Simple_repeat 2 43 0 25 51 0 0 chr4 14033723 14033762 -188294585 + AT_rich Low_complexity Low_complexity 1 39 0 25 0 0 0 chr4 14034081 14034106 -188294241 + AT_rich Low_complexity Low_complexity 1 25 0 2630 107 3 3 chr4 14034367 14034731 -188293616 + THE1B LTR MaLR 1 364 0 354 326 51 2 chr4 14035519 14035718 -188292629 + MIR SINE MIR 4 249 -13 24 0 0 0 chr4 14035725 14035749 -188292598 + AT_rich Low_complexity Low_complexity 1 24 0 798 236 50 0 chr4 14035826 14036025 -188292322 - MER3 DNA MER1_type 0 209 1 21 0 0 0 chr4 14036596 14036617 -188291730 + AT_rich Low_complexity Low_complexity 1 21 0 2280 84 7 10 chr4 14036628 14036937 -188291410 + AluY SINE Alu 1 308 -3 300 239 63 88 chr4 14037046 14037205 -188291142 + MER104 DNA Tc2 1 155 -25 24 67 0 0 chr4 14037522 14037567 -188290780 + AT_rich Low_complexity Low_complexity 1 45 0 229 363 38 6 chr4 14037621 14037781 -188290566 - MIR SINE MIR -14 248 84 390 284 96 46 chr4 14037930 14038169 -188290178 + L1ME LINE L1 5539 5789 -381 369 355 49 6 chr4 14038893 14039076 -188289271 + MIR SINE MIR 71 261 -1 23 54 0 0 chr4 14039765 14039802 -188288545 + AT_rich Low_complexity Low_complexity 1 37 0 715 208 8 0 chr4 14039802 14039927 -188288420 - FLAM_A SINE Alu -7 126 1 1222 183 26 0 chr4 14041708 14041938 -188286409 + MER46A DNA MER2_type 1 236 0 23 54 0 0 chr4 14042171 14042208 -188286139 + AT_rich Low_complexity Low_complexity 1 37 0 254 242 250 25 chr4 14043163 14043283 -188285064 + Charlie1 DNA MER1_type 14 160 -2601 1412 180 55 59 chr4 14043288 14043348 -188284999 + Charlie1 DNA MER1_type 2309 2368 -393 2109 107 0 4 chr4 14043348 14043660 -188284687 + AluSc SINE Alu 10 309 0 1412 180 55 59 chr4 14043660 14044054 -188284293 + Charlie1 DNA MER1_type 2368 2761 0 298 327 50 20 chr4 14044946 14045145 -188283202 + L2 LINE L2 2845 3049 -223 795 335 103 22 chr4 14045251 14045660 -188282687 - L2 LINE L2 -470 2844 2403 209 288 213 0 chr4 14046623 14046703 -188281644 + MIR3 SINE MIR 111 207 -1 212 209 0 0 chr4 14047148 14047191 -188281156 - MIR SINE MIR -110 152 110 214 293 40 71 chr4 14047219 14047318 -188281029 + MIR SINE MIR 87 182 -80 250 302 0 9 chr4 14055278 14055394 -188272953 + L1ME LINE L1 5708 5822 -299 2146 126 7 0 chr4 14056012 14056322 -188272025 - AluSq SINE Alu -1 312 1 230 281 0 0 chr4 14058267 14058324 -188270023 + (TA)n Simple_repeat Simple_repeat 2 58 0 1727 161 79 0 chr4 14059135 14059465 -188268882 + MER46B DNA MER2_type 1 231 -5 954 259 43 31 chr4 14060055 14060406 -188267941 - MER93b LTR ERV1 0 373 19 575 255 210 0 chr4 14061112 14061312 -188267035 + MIR SINE MIR 2 243 -19 203 260 0 0 chr4 14061278 14061328 -188267019 + L2 LINE L2 3214 3263 -9 * 1740 251 65 17 chr4 14061363 14061895 -188266452 + MER77 LTR ERV1 58 601 -4 23 0 0 0 chr4 14061983 14062006 -188266341 + AT_rich Low_complexity Low_complexity 1 23 0 258 357 23 23 chr4 14062026 14062156 -188266191 - MIR SINE MIR -75 133 1 23 86 0 0 chr4 14062552 14062610 -188265737 + AT_rich Low_complexity Low_complexity 1 58 0 200 149 21 64 chr4 14063059 14063106 -188265241 + CT-rich Low_complexity Low_complexity 4 48 0 302 288 131 74 chr4 14064812 14065163 -188263184 - L2 LINE L2 0 3313 2943 2341 93 3 10 chr4 14065689 14066000 -188262347 + AluSc SINE Alu 1 309 0 448 163 0 0 chr4 14066421 14066501 -188261846 + MER116 DNA Mariner 1 80 0 234 342 0 0 chr4 14066679 14066758 -188261589 - L3b LINE CR1 -121 1462 1384 228 242 21 63 chr4 14067242 14067337 -188261010 - L3b LINE CR1 -390 1193 1103 1507 176 67 7 chr4 14067765 14068049 -188260298 + AluJo SINE Alu 1 301 -11 180 246 18 53 chr4 14068288 14068345 -188260002 + MIR SINE MIR 118 172 -90 182 261 0 76 chr4 14069113 14069205 -188259142 + L3 LINE CR1 831 915 -662 1175 180 18 31 chr4 14069603 14069825 -188258522 + MER20 DNA MER1_type 1 219 0 1949 163 7 0 chr4 14070588 14070889 -188257458 - AluSx SINE Alu -9 303 1 253 173 0 19 chr4 14071138 14071190 -188257157 - L1MC4 LINE L1 -1332 6710 6660 875 257 89 72 chr4 14071217 14072035 -188256312 + L2 LINE L2 2428 3313 0 1693 141 0 8 chr4 14073150 14073406 -188254941 - AluSx SINE Alu -19 293 40 869 146 34 28 chr4 14073751 14073929 -188254418 - Charlie2 DNA MER1_type -649 2213 2035 2131 78 92 0 chr4 14074791 14075073 -188253274 + AluSc SINE Alu 1 308 -1 244 275 0 25 chr4 14075173 14075253 -188253094 + L2 LINE L2 2017 2094 -1220 44 35 0 0 chr4 14076164 14076222 -188252125 + GC_rich Low_complexity Low_complexity 1 58 0 339 137 0 0 chr4 14076222 14076295 -188252052 + (CGG)n Simple_repeat Simple_repeat 1 73 0 658 267 11 6 chr4 14077105 14077285 -188251062 - MIR SINE MIR -10 252 72 4203 213 98 68 chr4 14077291 14077977 -188250370 - Charlie2a DNA MER1_type -492 2370 1706 1764 155 10 7 chr4 14077977 14078274 -188250073 + AluJo SINE Alu 3 300 -12 4203 213 98 68 chr4 14078274 14078494 -188249853 - Charlie2a DNA MER1_type -1156 1706 1494 1093 214 153 0 chr4 14078494 14078756 -188249591 + AluJo SINE Alu 1 302 0 4203 213 98 68 chr4 14078756 14078827 -188249520 - Charlie2a DNA MER1_type -1368 1494 1427 2558 62 0 7 chr4 14078827 14079136 -188249211 + AluY SINE Alu 1 307 -4 4203 213 98 68 chr4 14079136 14079903 -188248444 - Charlie2a DNA MER1_type -1435 1427 572 2406 77 0 7 chr4 14080192 14080491 -188247856 - AluY SINE Alu -14 297 1 1929 142 0 26 chr4 14080907 14081210 -188247137 - AluSx SINE Alu -17 295 1 341 298 61 9 chr4 14081371 14081485 -188246862 - Charlie2a DNA MER1_type -2298 564 445 431 169 0 0 chr4 14082058 14082123 -188246224 - Tigger7 DNA MER2_type -1 2486 2422 2155 132 3 0 chr4 14082141 14082445 -188245902 + AluSx SINE Alu 1 305 -7 1223 197 105 4 chr4 14082483 14082722 -188245625 - Tigger7 DNA MER2_type -2222 265 3 591 276 13 13 chr4 14083243 14083395 -188244952 - MER5A DNA MER1_type -1 188 37 348 215 46 0 chr4 14083423 14083488 -188244859 + MER58A DNA MER1_type 9 76 -31 192 40 0 0 chr4 14083825 14083850 -188244497 + (TG)n Simple_repeat Simple_repeat 2 26 0 26 0 0 0 chr4 14084017 14084043 -188244304 + AT_rich Low_complexity Low_complexity 1 26 0 23 33 0 0 chr4 14085403 14085433 -188242914 + AT_rich Low_complexity Low_complexity 1 30 0 490 78 0 26 chr4 14086051 14086128 -188242219 + MADE1 DNA Mariner 6 80 0 367 241 80 0 chr4 14086497 14086609 -188241738 + MIR SINE MIR 53 173 -89 907 293 119 20 chr4 14086636 14087165 -188241182 - L2 LINE L2 -5 3308 2717 202 175 0 0 chr4 14087243 14087283 -188241064 - MIR SINE MIR -71 191 152 2206 103 0 3 chr4 14087400 14087690 -188240657 - AluSg SINE Alu -16 294 6 587 174 66 0 chr4 14088749 14088870 -188239477 - MER63 DNA MER1_type -296 766 12 315 225 50 42 chr4 14089586 14089706 -188238641 + MIR SINE MIR 47 167 -95 2335 132 20 39 chr4 14089882 14090290 -188238057 - MER57A LTR ERV1 -3 400 1 216 122 0 0 chr4 14090383 14090424 -188237923 + (TC)n Simple_repeat Simple_repeat 2 42 0 223 368 9 9 chr4 14090850 14090956 -188237391 + MIR SINE MIR 37 142 -120 183 186 0 0 chr4 14090958 14091001 -188237346 + CT-rich Low_complexity Low_complexity 2 44 0 472 303 23 17 chr4 14091013 14091188 -188237159 - MER5B DNA MER1_type -2 176 1 235 254 56 0 chr4 14091633 14091704 -188236643 - MIR SINE MIR -104 158 84 1241 186 0 14 chr4 14093094 14093315 -188235032 - AluJb SINE Alu -10 302 85 583 231 16 0 chr4 14093632 14093753 -188234594 + MER58A DNA MER1_type 40 162 0 301 313 133 26 chr4 14093895 14094090 -188234257 - L3 LINE CR1 -2 1575 1360 2128 128 3 3 chr4 14094911 14095209 -188233138 - AluSx SINE Alu -14 298 1 238 284 45 0 chr4 14095414 14095481 -188232866 - MER113 DNA MER1_type? 0 521 452 285 247 0 0 chr4 14095592 14095673 -188232674 - MER113 DNA MER1_type? -398 123 43 180 328 0 0 chr4 14095683 14095741 -188232606 + L3 LINE CR1 1516 1573 -4 333 0 0 0 chr4 14096341 14096378 -188231969 + (TG)n Simple_repeat Simple_repeat 2 38 0 2390 71 0 7 chr4 14097395 14097691 -188230656 - AluY SINE Alu -9 302 9 509 249 94 22 chr4 14097861 14098042 -188230305 + MER117 DNA MER1_type 4 197 0 2527 174 16 53 chr4 14098210 14098394 -188229953 + MER70A LTR ERVL 1 190 -282 1790 71 12 28 chr4 14098394 14098646 -188229701 + L1PA7 LINE L1 5907 6154 0 2527 174 16 53 chr4 14098646 14098951 -188229396 + MER70A LTR ERVL 190 472 0 254 323 16 55 chr4 14098951 14099078 -188229269 - MIR SINE MIR -113 149 28 2198 208 27 37 chr4 14099166 14099203 -188229144 - L1ME3 LINE L1 -32 6130 6094 2083 145 0 3 chr4 14099203 14099500 -188228847 - AluSq SINE Alu -17 296 1 2198 208 27 37 chr4 14099500 14100009 -188228338 - L1ME3 LINE L1 -68 6094 5589 1693 202 33 22 chr4 14100016 14100377 -188227970 + MLT1A1 LTR MaLR 1 365 0 355 306 9 0 chr4 14100402 14100513 -188227834 + L2 LINE L2 3202 3313 0 1424 259 106 17 chr4 14100619 14101137 -188227210 - MER20B DNA MER1_type -22 761 198 188 379 24 24 chr4 14101267 14101391 -188226956 - MIR3 SINE MIR -49 159 36 544 285 149 9 chr4 14101417 14101638 -188226709 + MIR SINE MIR 10 261 -1 303 314 6 57 chr4 14101964 14102139 -188226208 - MIR SINE MIR -16 246 81 3270 122 28 35 chr4 14102157 14102731 -188225616 + MER4B LTR ERV1 5 574 -36 373 194 28 0 chr4 14102783 14102855 -188225492 - LTR16C LTR ERVL 0 491 418 21 36 0 0 chr4 14102855 14102883 -188225464 + AT_rich Low_complexity Low_complexity 1 28 0 283 262 47 54 chr4 14102884 14103033 -188225314 + LTR41 LTR ERVL 21 168 -605 327 238 86 29 chr4 14103600 14103705 -188224642 + LTR41 LTR ERVL 657 767 -6 586 262 92 71 chr4 14103734 14104028 -188224319 - LTR16C LTR ERVL -107 384 85 289 200 85 62 chr4 14104919 14105049 -188223298 + L1MC4a LINE L1 5847 5979 -1829 189 74 0 0 chr4 14105779 14105806 -188222541 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 379 307 0 0 chr4 14105964 14106065 -188222282 - MIR SINE MIR -119 143 43 849 276 93 21 chr4 14106616 14106956 -188221391 - MER113 DNA MER1_type? -48 473 94 2239 68 0 0 chr4 14106956 14107221 -188221126 + AluY SINE Alu 30 294 -17 849 276 93 21 chr4 14107221 14107312 -188221035 - MER113 DNA MER1_type? -427 94 11 1710 179 0 10 chr4 14107314 14107605 -188220742 + AluJb SINE Alu 1 288 -24 403 239 110 0 chr4 14107720 14107829 -188220518 - MIR3 SINE MIR -6 202 82 227 265 0 0 chr4 14107853 14107902 -188220445 + (TG)n Simple_repeat Simple_repeat 2 50 0 313 156 78 11 chr4 14109073 14109163 -188219184 - MIR SINE MIR -1 261 166 252 0 0 0 chr4 14109949 14109977 -188218370 + (TTA)n Simple_repeat Simple_repeat 3 30 0 20983 27 2 0 chr4 14109977 14113193 -188215154 - L1PA3 LINE L1 -18 6137 2919 6075 63 1 9 chr4 14113200 14113980 -188214367 - L1PA3 LINE L1 -5370 776 3 2171 176 11 8 chr4 14114071 14114435 -188213912 - MLT1A1 LTR MaLR 0 365 1 2214 218 92 40 chr4 14114442 14115083 -188213264 - MLT1A1-int LTR MaLR -8 1727 880 3261 115 10 49 chr4 14115089 14115602 -188212745 + LTR3b LTR ERVK 1 493 -7 4080 198 36 31 chr4 14115670 14116510 -188211837 - MLT1A1-int LTR MaLR -890 845 2 1817 199 16 40 chr4 14116510 14116882 -188211465 - MLT1A1 LTR MaLR -2 363 1 21 36 0 0 chr4 14116974 14117002 -188211345 + AT_rich Low_complexity Low_complexity 1 28 0 367 346 15 15 chr4 14117004 14117140 -188211207 - MIR SINE MIR -117 145 10 183 310 17 17 chr4 14117800 14117858 -188210489 - L2 LINE L2 -52 3220 3163 226 343 0 0 chr4 14117990 14118063 -188210284 + L2 LINE L2 3227 3299 -14 213 371 103 0 chr4 14118177 14118390 -188209957 - MIR SINE MIR -6 256 22 288 0 0 0 chr4 14118645 14118677 -188209670 + (T)n Simple_repeat Simple_repeat 1 32 0 2198 116 0 0 chr4 14118677 14118978 -188209369 - SVA Other Other -216 1170 870 279 0 0 0 chr4 14119172 14119203 -188209144 + (T)n Simple_repeat Simple_repeat 1 31 0 4787 73 7 108 chr4 14119203 14120340 -188208007 - SVA Other Other -709 1170 433 2385 73 0 7 chr4 14121288 14121591 -188206756 - AluY SINE Alu -10 301 1 379 274 173 44 chr4 14121660 14121686 -188206661 - MIR SINE MIR 0 262 241 1815 182 25 6 chr4 14121686 14122044 -188206303 - MLT1A1 LTR MaLR 0 365 1 379 274 173 44 chr4 14122044 14122243 -188206104 - MIR SINE MIR -21 241 8 1032 217 48 13 chr4 14122354 14122667 -188205680 - MER33 DNA MER1_type 0 324 1 1775 176 17 62 chr4 14122750 14123154 -188205193 - MLT1B LTR MaLR -2 388 3 345 310 20 0 chr4 14123211 14123311 -188205036 - MIR SINE MIR -104 158 57 4663 212 15 4 chr4 14123351 14124609 -188203738 + L1PA15-16 LINE L1 2008 3280 -3569 1202 197 43 35 chr4 14125033 14125543 -188202804 + MLT1C LTR MaLR 1 467 0 281 308 137 0 chr4 14127002 14127119 -188201228 + MIR SINE MIR 101 233 -29 600 252 40 122 chr4 14127121 14127399 -188200948 - MIR SINE MIR 0 262 8 2161 148 11 3 chr4 14127854 14128211 -188200136 - L1PB4 LINE L1 -8 6148 5789 201 268 18 0 chr4 14128212 14128268 -188200079 + (TATATG)n Simple_repeat Simple_repeat 2 58 0 290 266 0 25 chr4 14128447 14128526 -188199821 + (CATATA)n Simple_repeat Simple_repeat 6 82 0 320 244 17 28 chr4 14128527 14128707 -188199640 + (CATA)n Simple_repeat Simple_repeat 1 178 0 572 128 11 0 chr4 14128719 14128813 -188199534 - L1PB4 LINE L1 -379 5777 5683 297 302 157 6 chr4 14128816 14128975 -188199372 - MIR3 SINE MIR -10 198 16 266 342 13 0 chr4 14129811 14129887 -188198460 - MIR SINE MIR -102 106 30 1815 202 41 137 chr4 14129887 14130324 -188198023 - MER89 LTR ERV1 0 559 196 566 86 0 12 chr4 14130324 14130405 -188197942 - MADE1 DNA Mariner 0 80 1 1815 202 41 137 chr4 14130405 14130580 -188197767 - MER89 LTR ERV1 -363 196 6 1040 226 9 18 chr4 14130604 14130830 -188197517 - MER58A DNA MER1_type 0 224 1 25 0 0 0 chr4 14130997 14131022 -188197325 + AT_rich Low_complexity Low_complexity 1 25 0 735 296 40 40 chr4 14131267 14131665 -188196682 - MLT1L LTR MaLR -211 404 7 484 272 74 32 chr4 14132012 14132229 -188196118 + MIR SINE MIR 22 247 -15 281 331 42 49 chr4 14132927 14133069 -188195278 + L2 LINE L2 3172 3312 -1 239 246 0 0 chr4 14133441 14133498 -188194849 - MER117 DNA MER1_type -136 61 5 206 305 66 71 chr4 14133951 14134148 -188194199 + L3 LINE CR1 1119 1314 -263 1571 26 11 11 chr4 14134486 14134677 -188193670 + L1PA7 LINE L1 5964 6154 0 22 35 0 0 chr4 14134849 14134878 -188193469 + AT_rich Low_complexity Low_complexity 1 29 0 4807 164 16 24 chr4 14134879 14135892 -188192455 - L1MA7 LINE L1 -2 6493 5481 1916 152 45 31 chr4 14135892 14136248 -188192099 + THE1B LTR MaLR 4 364 0 4807 164 16 24 chr4 14136248 14136557 -188191790 - L1MA7 LINE L1 -1014 5481 5171 3611 277 50 33 chr4 14136674 14136969 -188191378 - L1MA7 LINE L1 -2881 3469 3180 2211 84 3 20 chr4 14136969 14137266 -188191081 - AluSp SINE Alu -1 312 21 3611 277 50 33 chr4 14137266 14139921 -188188426 - L1MA7 LINE L1 -3170 3180 827 4292 162 16 12 chr4 14140153 14140975 -188187372 - L1MA4 LINE L1 -13 6287 5463 13552 171 25 30 chr4 14140976 14142073 -188186274 - L1PA13 LINE L1 -2 6863 5762 1405 180 149 7 chr4 14142073 14142368 -188185979 - MER1B DNA MER1_type 0 337 1 13552 171 25 30 chr4 14142368 14142453 -188185894 - L1PA13 LINE L1 -1103 5762 5678 1912 82 0 4 chr4 14142453 14142698 -188185649 - AluSq SINE Alu -7 306 63 13552 171 25 30 chr4 14142698 14145813 -188182534 - L1PA13 LINE L1 -1187 5678 2596 287 380 25 4 chr4 14145932 14146158 -188182189 - L1MA7 LINE L1 -4722 628 374 384 337 86 7 chr4 14146200 14146491 -188181856 - L2 LINE L2 -455 2859 2546 345 315 58 12 chr4 14146802 14147059 -188181288 - L1ME4a LINE L1 -162 5959 5691 * 1676 236 34 9 chr4 14147055 14147522 -188180825 + L1ME2 LINE L1 5685 6163 -1 509 184 48 8 chr4 14148133 14148258 -188180089 + L1ME2 LINE L1 6026 6155 -9 233 188 43 103 chr4 14149428 14149545 -188178802 - L1ME3 LINE L1 -59 6103 5994 481 185 0 0 chr4 14149598 14149679 -188178668 + MER81 DNA DNA 19 99 -15 733 269 33 5 chr4 14149698 14149957 -188178390 - L1ME3 LINE L1 -184 5978 5709 1681 220 25 8 chr4 14150051 14150410 -188177937 - MLT1A1 LTR MaLR 0 365 1 10369 194 8 4 chr4 14150509 14153434 -188174913 - L1PA13 LINE L1 0 6163 3220 396 217 163 90 chr4 14153436 14153607 -188174740 - MIR SINE MIR -58 150 3 226 259 35 47 chr4 14154670 14154755 -188173592 - MIR3 SINE MIR -28 180 97 645 221 61 9 chr4 14154842 14155073 -188173274 - L1ME4a LINE L1 0 6121 5879 2981 101 16 0 chr4 14155106 14155540 -188172807 + LTR9 LTR ERV1 1 441 -171 1432 99 0 0 chr4 14155578 14155760 -188172587 - AluY SINE Alu -129 182 1 1000 101 5 139 chr4 14155764 14155973 -188172374 + LTR9 LTR ERV1 432 612 0 279 264 11 0 chr4 14155974 14156061 -188172286 - L1ME4a LINE L1 -272 5849 5762 233 293 38 9 chr4 14156461 14156567 -188171780 + T-rich Low_complexity Low_complexity 3 111 0 * 282 263 13 13 chr4 14156495 14156571 -188171776 + CT-rich Low_complexity Low_complexity 4 79 0 952 198 39 0 chr4 14156572 14156804 -188171543 - L1MA9 LINE L1 0 6312 6072 572 316 23 35 chr4 14157019 14157275 -188171072 + MIR SINE MIR 2 254 -8 1968 192 27 64 chr4 14158242 14158726 -188169621 - MLT1C LTR MaLR -1 466 1 377 250 55 23 chr4 14159523 14159537 -188168810 + MIR3 SINE MIR 76 88 -120 2358 97 3 0 chr4 14159537 14159847 -188168500 + AluY SINE Alu 1 311 0 377 250 55 23 chr4 14159847 14159960 -188168387 + MIR3 SINE MIR 88 207 -1 412 299 37 30 chr4 14160330 14160494 -188167853 - MIR SINE MIR -95 167 3 1872 52 8 24 chr4 14160725 14160973 -188167374 - L1PA6 LINE L1 -4 6150 5907 273 247 21 52 chr4 14161452 14161549 -188166798 + MIR SINE MIR 41 134 -128 1742 163 49 0 chr4 14161701 14161989 -188166358 - AluSx SINE Alu -10 302 1 459 288 53 43 chr4 14162249 14162530 -188165817 + MLT1K LTR MaLR 199 482 -106 1730 203 158 49 chr4 14162839 14163014 -188165333 + MER76 LTR ERV 1 156 -532 1995 110 0 7 chr4 14163014 14163319 -188165028 + AluSc SINE Alu 1 303 0 1730 203 158 49 chr4 14163319 14163732 -188164615 + MER76 LTR ERV 156 654 -34 342 277 143 9 chr4 14163868 14163980 -188164367 + MER5B DNA MER1_type 47 173 -5 256 313 96 60 chr4 14163969 14164135 -188164212 + MER5A DNA MER1_type 12 183 -6 * 252 59 0 0 chr4 14164156 14164190 -188164157 + (TG)n Simple_repeat Simple_repeat 2 35 0 538 272 15 67 chr4 14164344 14164492 -188163855 + MIR SINE MIR 78 215 -47 1272 179 27 62 chr4 14164492 14164828 -188163519 + MER33 DNA MER1_type 1 324 0 538 272 15 67 chr4 14164828 14164874 -188163473 + MIR SINE MIR 215 262 0 1582 198 105 5 chr4 14165318 14165727 -188162620 + MLT1C LTR MaLR 6 455 -12 210 238 36 83 chr4 14167119 14167203 -188161144 + L2 LINE L2 2435 2514 -800 365 310 54 8 chr4 14168037 14168201 -188160146 + MIR SINE MIR 8 184 -57 357 283 21 14 chr4 14168730 14168875 -188159472 + MER117 DNA MER1_type 3 148 -49 342 301 183 18 chr4 14169507 14169726 -188158621 + MIR SINE MIR 5 259 -3 207 310 130 10 chr4 14171195 14171295 -188157052 - MIR SINE MIR -63 145 34 1440 168 0 0 chr4 14171984 14172216 -188156131 - AluJb SINE Alu -7 305 74 299 125 0 0 chr4 14172219 14172259 -188156088 - AluSp SINE Alu -130 173 134 854 159 0 0 chr4 14172259 14172391 -188155956 - AluJo/FLAM SINE Alu -169 133 2 1923 245 34 11 chr4 14172569 14173006 -188155341 - MER21B LTR ERV1 -319 544 98 1380 333 46 46 chr4 14173031 14173709 -188154638 - HERV16 LTR ERVL -4285 711 31 1809 58 4 46 chr4 14173709 14173950 -188154397 + L1PA10 LINE L1 5938 6168 0 1380 333 46 46 chr4 14173950 14173982 -188154365 - HERV16 LTR ERVL -4964 32 1 648 304 92 42 chr4 14173988 14174209 -188154138 - LTR16A LTR ERVL -10 440 231 1692 214 87 16 chr4 14174209 14174579 -188153768 + MSTD LTR MaLR 1 396 0 648 304 92 42 chr4 14174579 14174758 -188153589 - LTR16A LTR ERVL -219 231 20 5018 195 44 67 chr4 14175248 14176314 -188152033 - L1MD1 LINE L1 0 6242 5153 3310 82 29 13 chr4 14176314 14176768 -188151579 - L1MA1 LINE L1 0 6302 5842 263 132 0 0 chr4 14176768 14176806 -188151541 + 5S rRNA rRNA 3 40 -81 5018 195 44 67 chr4 14176806 14177577 -188150770 - L1MD1 LINE L1 -1087 5155 4421 191 250 53 26 chr4 14177634 14177710 -188150637 + MIR SINE MIR 143 220 -42 182 291 97 30 chr4 14177770 14177904 -188150443 + MIR SINE MIR 70 212 -50 29 28 0 0 chr4 14178046 14178082 -188150265 + AT_rich Low_complexity Low_complexity 1 36 0 201 74 0 0 chr4 14178562 14178589 -188149758 + (CAGTT)n Simple_repeat Simple_repeat 1 27 0 270 300 80 10 chr4 14178914 14179014 -188149333 - L2 LINE L2 -5 3308 3202 3867 123 2 6 chr4 14181412 14181955 -188146392 + L1PA16 LINE L1 5617 6157 -9 1736 155 16 47 chr4 14181990 14182312 -188146035 - AluJb SINE Alu 0 312 1 794 335 88 29 chr4 14182604 14183022 -188145325 - LTR16B LTR ERVL -21 443 1 479 252 48 1 chr4 14183022 14183156 -188145191 - MIR SINE MIR -68 140 2 2243 155 40 28 chr4 14183213 14183759 -188144588 + MLT2A2 LTR ERVL 1 554 0 289 208 49 132 chr4 14183979 14184123 -188144224 + L2 LINE L2 3182 3313 0 678 296 63 67 chr4 14184635 14185146 -188143201 - L2 LINE L2 0 3272 2767 2544 48 0 6 chr4 14185146 14185458 -188142889 - AluY SINE Alu -1 310 1 678 296 63 67 chr4 14185458 14185522 -188142825 - L2 LINE L2 -505 2767 2704 351 222 19 56 chr4 14185838 14185946 -188142401 + MIR3 SINE MIR 88 191 -17 554 241 48 0 chr4 14186326 14186471 -188141876 - MIR SINE MIR -25 237 86 326 240 173 39 chr4 14186505 14186712 -188141635 + MIR SINE MIR 15 256 -6 258 32 0 0 chr4 14187197 14187206 -188141141 + (CA)n Simple_repeat Simple_repeat 1 40 0 258 32 0 0 chr4 14187206 14187237 -188141110 + (CA)n Simple_repeat Simple_repeat 2 32 0 641 178 134 45 chr4 14187483 14187685 -188140662 - MER20B DNA MER1_type -27 756 537 815 226 35 80 chr4 14187701 14188057 -188140290 - MLT1H LTR MaLR -212 336 33 805 289 31 0 chr4 14188119 14188347 -188140000 - MIR SINE MIR -13 249 15 1085 161 0 0 chr4 14188915 14189083 -188139264 - AluJb SINE Alu -11 301 134 3026 280 84 31 chr4 14189374 14190864 -188137483 - L2 LINE L2 0 3313 1740 372 158 158 0 chr4 14190865 14190947 -188137400 + AluSg/x SINE Alu 206 300 0 1067 113 54 48 chr4 14190954 14191140 -188137207 - THE1B LTR MaLR 0 364 178 886 54 16 0 chr4 14191141 14191270 -188137077 + (TTTC)n Simple_repeat Simple_repeat 2 132 0 29678 122 22 60 chr4 14191270 14191647 -188136700 - L1PA8 LINE L1 -23 6149 5759 2397 88 0 0 chr4 14191647 14191942 -188136405 - AluY SINE Alu -16 295 1 29678 122 22 60 chr4 14191942 14197959 -188130388 - L1PA8 LINE L1 -413 5759 12 22 0 0 0 chr4 14197967 14197989 -188130358 + AT_rich Low_complexity Low_complexity 1 22 0 1259 55 103 0 chr4 14197993 14198158 -188130189 - THE1B LTR MaLR -182 182 1 2259 267 111 28 chr4 14198198 14199119 -188129228 - L2 LINE L2 -1639 1675 679 263 372 39 17 chr4 14200654 14200834 -188127513 + MIR SINE MIR 47 230 -32 210 231 0 19 chr4 14200883 14200935 -188127412 - MIR SINE MIR -112 150 100 288 0 0 0 chr4 14201530 14201562 -188126785 + (CA)n Simple_repeat Simple_repeat 2 33 0 525 285 70 30 chr4 14202223 14202423 -188125924 + MIR SINE MIR 30 237 -25 372 248 186 14 chr4 14202428 14202712 -188125635 - LTR50 LTR ERVL -4 682 348 2033 230 18 67 chr4 14203031 14203601 -188124746 + MER44D DNA MER2_type 1 597 -8 1007 114 6 0 chr4 14203932 14204098 -188124249 + (TCCA)n Simple_repeat Simple_repeat 3 169 0 219 364 76 61 chr4 14204136 14204334 -188124013 - L2 LINE L2 0 3272 3072 543 332 35 0 chr4 14204417 14204619 -188123728 + MIR SINE MIR 49 257 -5 189 283 100 76 chr4 14204662 14204838 -188123509 - MIR3 SINE MIR -68 140 10 212 366 73 66 chr4 14205457 14205774 -188122573 - L2 LINE L2 -27 3245 2927 663 259 52 15 chr4 14205820 14206106 -188122241 - L1ME LINE L1 -651 5511 5215 207 253 24 12 chr4 14206129 14206212 -188122135 + (TA)n Simple_repeat Simple_repeat 2 85 0 315 330 33 33 chr4 14206251 14206466 -188121881 - L1ME LINE L1 -1045 5101 4887 6827 172 8 2 chr4 14206532 14208822 -188119525 - L1PB1 LINE L1 -2 6865 4560 11439 138 55 10 chr4 14208835 14210928 -188117419 - L1PB1 LINE L1 -3543 3319 1130 280 307 114 0 chr4 14210957 14211071 -188117276 + MIR SINE MIR 96 222 -40 203 310 17 17 chr4 14211941 14211999 -188116348 - L2 LINE L2 -52 3220 3163 245 343 0 0 chr4 14212131 14212204 -188116143 + L2 LINE L2 3227 3299 -14 271 371 103 0 chr4 14212318 14212531 -188115816 - MIR SINE MIR -6 256 22 297 0 0 0 chr4 14212786 14212819 -188115528 + (T)n Simple_repeat Simple_repeat 1 33 0 8406 29 0 197 chr4 14212819 14214276 -188114071 - SVA Other Other -216 1170 1 180 0 0 0 chr4 14214276 14214296 -188114051 + (GGGAGA)n Simple_repeat Simple_repeat 2 21 0 284 298 102 42 chr4 14215144 14215344 -188113003 + MIR SINE MIR 3 212 -50 191 319 112 47 chr4 14215860 14216092 -188112255 + L2 LINE L2 2814 3060 -212 253 259 0 0 chr4 14217112 14217166 -188111181 + GA-rich Low_complexity Low_complexity 4 57 0 326 352 0 0 chr4 14217688 14217793 -188110554 + MIR SINE MIR 48 152 -110 * 589 329 66 25 chr4 14217787 14218030 -188110317 + L2 LINE L2 2907 3159 -113 593 64 28 18 chr4 14220034 14220143 -188108204 + (TCTA)n Simple_repeat Simple_repeat 1 110 0 732 262 80 0 chr4 14220397 14220634 -188107713 + MIR SINE MIR 5 260 -2 848 236 27 106 chr4 14221065 14221395 -188106952 + L1MC5 LINE L1 6611 6914 -1047 * 13567 194 20 15 chr4 14221393 14221663 -188106684 - L1PB1 LINE L1 -88 6779 6512 231 114 0 0 chr4 14221663 14221698 -188106649 + (TG)n Simple_repeat Simple_repeat 2 36 0 13567 194 20 15 chr4 14221698 14221995 -188106352 - L1PB1 LINE L1 -355 6512 6218 207 0 0 0 chr4 14221995 14222018 -188106329 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 13567 194 20 15 chr4 14222018 14225121 -188103226 - L1PB1 LINE L1 -649 6218 3057 2243 87 7 13 chr4 14225121 14225419 -188102928 - AluY SINE Alu -15 296 1 13567 194 20 15 chr4 14225419 14226804 -188101543 - L1PB1 LINE L1 -3810 3057 1680 1437 114 17 8 chr4 14226833 14227070 -188101277 + Tigger5 DNA MER2_type 2085 2323 0 643 222 21 39 chr4 14227217 14227451 -188100896 + L1MC5 LINE L1 7305 7534 -427 2792 88 3 3 chr4 14227513 14227877 -188100470 - THE1B LTR MaLR 0 364 1 9245 122 36 39 chr4 14227882 14229460 -188098887 - THE1B-int LTR MaLR -6 1574 1 2390 148 0 0 chr4 14229460 14229824 -188098523 - THE1B LTR MaLR 0 364 1 552 266 56 22 chr4 14229834 14230101 -188098246 + L1MC5 LINE L1 7660 7935 -26 2507 96 3 25 chr4 14230801 14231164 -188097183 - THE1A LTR MaLR 0 355 1 11566 103 1 5 chr4 14231164 14232751 -188095596 - THE1A-int LTR MaLR 0 1580 1 2709 72 17 0 chr4 14232751 14233100 -188095247 - THE1A LTR MaLR 0 355 1 368 279 19 0 chr4 14233100 14233204 -188095143 + MER81 DNA DNA 5 110 -4 295 302 56 40 chr4 14234415 14234541 -188093806 + MIR SINE MIR 20 147 -115 216 0 0 0 chr4 14234693 14234717 -188093630 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 230 333 10 10 chr4 14234957 14235056 -188093291 + MIR SINE MIR 134 232 -30 501 214 55 75 chr4 14235660 14235865 -188092482 - MIR SINE MIR 0 262 66 963 225 9 18 chr4 14235922 14236140 -188092207 - MER20 DNA MER1_type -1 218 3 2198 113 0 3 chr4 14236868 14237161 -188091186 + AluSc SINE Alu 1 292 -17 393 314 195 5 chr4 14237285 14237495 -188090852 - MIR SINE MIR -7 255 6 1963 177 56 22 chr4 14237747 14238194 -188090153 - MLT1C LTR MaLR 0 467 6 237 267 33 0 chr4 14238605 14238665 -188089682 + CT-rich Low_complexity Low_complexity 3 64 0 271 319 59 15 chr4 14239122 14239257 -188089090 - MIR SINE MIR -6 256 116 2450 82 0 3 chr4 14239277 14239581 -188088766 - AluY SINE Alu -8 303 1 28 0 0 0 chr4 14239654 14239682 -188088665 + AT_rich Low_complexity Low_complexity 1 28 0 1748 174 59 0 chr4 14239712 14239999 -188088348 - AluJo SINE Alu -8 304 1 959 224 36 46 chr4 14240001 14241462 -188086885 - L1M4 LINE L1 -1906 4240 2644 663 233 107 68 chr4 14241462 14241771 -188086576 - MER57A LTR ERV1 0 403 83 1183 213 27 30 chr4 14241852 14242219 -188086128 - L1M4 LINE L1 -3527 2619 2254 * 3457 254 62 37 chr4 14242212 14243823 -188084524 - L1MEc LINE L1 -2225 3990 2339 1485 268 68 44 chr4 14243854 14244901 -188083446 - L1MEc LINE L1 -4453 1943 872 283 196 137 29 chr4 14244966 14245068 -188083279 - MLT1J LTR MaLR 0 511 399 233 265 24 36 chr4 14245289 14245372 -188082975 - MLT1L LTR MaLR -388 227 146 356 240 13 0 chr4 14245831 14245906 -188082441 + MIR SINE MIR 79 154 -108 1876 191 84 14 chr4 14246050 14246538 -188081809 - Charlie1b DNA MER1_type 0 523 2 509 244 154 0 chr4 14246553 14246709 -188081638 + MIR SINE MIR 65 244 -18 418 243 66 28 chr4 14246936 14247093 -188081254 - MIR SINE MIR -62 146 26 511 332 76 13 chr4 14247710 14247948 -188080399 - MIR SINE MIR -8 254 2 27 29 0 0 chr4 14248374 14248408 -188079939 + AT_rich Low_complexity Low_complexity 1 34 0 476 242 157 33 chr4 14248794 14248947 -188079400 - MIR SINE MIR -70 192 21 559 184 8 19 chr4 14249992 14250254 -188078093 + GA-rich Low_complexity Low_complexity 1 259 0 34571 38 101 3 chr4 14251112 14256711 -188071636 + L1PA3 LINE L1 1 6168 0 1884 134 0 0 chr4 14257082 14257367 -188070980 - AluSc SINE Alu 0 304 20 610 269 12 23 chr4 14257554 14257725 -188070622 - MER5A DNA MER1_type 0 189 21 299 283 18 71 chr4 14257846 14257959 -188070388 - MIR SINE MIR -4 258 152 454 239 119 15 chr4 14258003 14258137 -188070210 - MIR SINE MIR -94 168 21 1009 176 11 0 chr4 14258244 14258420 -188069927 - MER58A DNA MER1_type 0 224 47 272 254 138 51 chr4 14258677 14258815 -188069532 + L2 LINE L2 2637 2786 -528 199 339 32 113 chr4 14259668 14259916 -188068431 + L2 LINE L2 3014 3241 -31 440 107 39 0 chr4 14259922 14260025 -188068322 + (TA)n Simple_repeat Simple_repeat 1 107 0 316 224 71 0 chr4 14260025 14260110 -188068237 + L1MC4 LINE L1 6613 6703 -1339 284 352 9 0 chr4 14260744 14260849 -188067498 + MIR3 SINE MIR 74 179 -29 253 293 88 75 chr4 14261119 14261177 -188067170 - MIR SINE MIR -32 230 174 2064 128 7 3 chr4 14261177 14261475 -188066872 - AluSq SINE Alu -12 301 3 253 293 88 75 chr4 14261475 14261630 -188066717 - MIR SINE MIR -88 174 12 296 218 7 20 chr4 14262527 14262674 -188065673 + GA-rich Low_complexity Low_complexity 2 146 0 239 420 9 9 chr4 14262684 14262796 -188065551 + MIR SINE MIR 37 148 -60 1880 338 79 30 chr4 14262963 14264245 -188064102 + L2 LINE L2 1525 2869 -445 2613 127 8 42 chr4 14264361 14264832 -188063515 + MER41B LTR ERV1 1 455 -180 422 207 40 6 chr4 14264839 14265013 -188063334 + (TA)n Simple_repeat Simple_repeat 1 180 0 636 86 16 54 chr4 14265039 14265225 -188063122 + (TTATA)n Simple_repeat Simple_repeat 1 179 0 241 79 95 0 chr4 14265225 14265288 -188063059 + (TA)n Simple_repeat Simple_repeat 1 69 0 319 159 63 0 chr4 14265288 14265351 -188062996 + MER41A LTR ERV1 488 554 0 457 306 8 0 chr4 14265471 14265592 -188062755 - MIR3 SINE MIR -14 194 73 253 247 0 118 chr4 14265967 14266052 -188062295 + MIR SINE MIR 110 184 -78 236 328 62 31 chr4 14266257 14266385 -188061962 + L2 LINE L2 3115 3246 -67 310 269 58 10 chr4 14266442 14266546 -188061801 - L2 LINE L2 -36 3277 3169 385 264 0 11 chr4 14266551 14266642 -188061705 + MIR SINE MIR 64 153 -109 397 138 21 0 chr4 14266705 14266799 -188061548 + (TA)n Simple_repeat Simple_repeat 1 96 0 1711 164 17 14 chr4 14266826 14267113 -188061234 - AluJb SINE Alu -24 288 1 1535 229 30 39 chr4 14267113 14267157 -188061190 + LTR40a LTR ERVL 87 130 -389 1419 119 50 5 chr4 14267157 14267376 -188060971 + MER30 DNA MER1_type 1 229 -1 1535 229 30 39 chr4 14267376 14267763 -188060584 + LTR40a LTR ERVL 130 514 -5 32 43 0 0 chr4 14267763 14267809 -188060538 + AT_rich Low_complexity Low_complexity 1 46 0 2015 178 46 17 chr4 14267828 14268239 -188060108 - L1PB4 LINE L1 -12 6144 5722 272 160 20 0 chr4 14268257 14268307 -188060040 + MIR SINE MIR 141 191 -71 274 352 29 0 chr4 14268391 14268496 -188059851 + L2 LINE L2 2978 3085 -228 1267 246 8 45 chr4 14268496 14268894 -188059453 - MLT2C1 LTR ERVL -2 395 13 314 292 66 7 chr4 14268920 14269057 -188059290 + L2 LINE L2 3100 3244 -69 442 342 58 67 chr4 14269464 14269806 -188058541 + L2 LINE L2 2920 3258 -14 510 262 16 55 chr4 14269871 14270054 -188058293 - MER5B DNA MER1_type 0 178 3 574 260 151 9 chr4 14270482 14270701 -188057646 + MIR SINE MIR 10 259 -3 241 250 33 0 chr4 14270765 14270825 -188057522 + L2 LINE L2 2598 2659 -655 581 278 109 34 chr4 14271254 14271639 -188056708 - MLT1J2 LTR MaLR -36 414 1 668 202 45 20 chr4 14272100 14272298 -188056049 + MLT1C LTR MaLR 34 236 -231 * 753 215 37 11 chr4 14272290 14272477 -188055870 + MLT1C LTR MaLR 187 493 -90 299 267 0 0 chr4 14272547 14272607 -188055740 + MER91 DNA MER1_type 128 187 -3 206 69 0 0 chr4 14272901 14272930 -188055417 - L2 LINE L2 -218 3054 3026 1991 219 72 12 chr4 14273058 14273560 -188054787 + MER74A LTR ERVL 3 534 -24 195 129 0 0 chr4 14274386 14274417 -188053930 + (TTC)n Simple_repeat Simple_repeat 2 32 0 353 298 26 18 chr4 14274774 14274888 -188053459 - L2 LINE L2 0 3313 3199 403 306 144 0 chr4 14274979 14275152 -188053195 + MIR SINE MIR 64 261 -1 338 302 156 26 chr4 14275506 14275698 -188052649 + MIR SINE MIR 11 227 -35 239 329 73 15 chr4 14275765 14275902 -188052445 + MIR SINE MIR 15 144 -64 315 338 82 68 chr4 14276047 14276266 -188052081 + L2 LINE L2 2720 2941 -373 2458 121 11 11 chr4 14276340 14276695 -188051652 + THE1A LTR MaLR 1 355 0 12323 101 5 1 chr4 14276695 14278268 -188050079 + THE1A-int LTR MaLR 1 1580 0 2600 99 8 8 chr4 14278270 14278623 -188049724 + THE1A LTR MaLR 3 355 0 441 271 36 88 chr4 14278670 14278921 -188049426 + L2 LINE L2 3075 3312 -1 2331 101 0 25 chr4 14279190 14279506 -188048841 - AluSx SINE Alu -4 308 1 23 0 0 0 chr4 14279705 14279728 -188048619 + AT_rich Low_complexity Low_complexity 1 23 0 341 212 186 0 chr4 14280715 14280828 -188047519 + MIR SINE MIR 107 240 -22 681 261 0 96 chr4 14281199 14281459 -188046888 - MIR SINE MIR 0 262 28 1136 268 87 22 chr4 14281566 14281936 -188046411 + MSTD LTR MaLR 3 396 0 380 278 7 42 chr4 14282267 14282411 -188045936 - L2 LINE L2 -190 3082 2944 253 139 0 0 chr4 14283231 14283274 -188045073 + MIR SINE MIR 118 160 -102 704 302 104 53 chr4 14283282 14284186 -188044161 + L2 LINE L2 2299 3256 -57 524 192 218 6 chr4 14284186 14284342 -188044005 - MER53 DNA DNA 0 189 1 704 302 104 53 chr4 14284342 14284402 -188043945 + L2 LINE L2 3256 3312 -1 727 274 66 72 chr4 14284662 14285104 -188043243 - MLT1J LTR MaLR -68 443 5 327 322 203 28 chr4 14285491 14285845 -188042502 + L3 LINE CR1 746 1161 -416 337 299 185 0 chr4 14285856 14286013 -188042334 + L3 LINE CR1 637 822 -755 652 181 29 0 chr4 14286013 14286151 -188042196 + L1MA8 LINE L1 6146 6287 -4 1118 277 117 13 chr4 14287294 14287764 -188040583 - LTR33 LTR ERVL 0 521 3 214 250 88 0 chr4 14287883 14287951 -188040396 + L2 LINE L2 3193 3266 -6 195 42 0 0 chr4 14287955 14287979 -188040368 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 239 301 121 36 chr4 14288348 14288514 -188039833 - L2 LINE L2 -9 3304 3125 215 324 83 50 chr4 14288548 14288826 -188039521 - L2 LINE L2 -159 3113 2827 565 203 61 25 chr4 14288879 14289039 -188039308 + MER96B DNA MER1_type? 11 177 -240 5126 175 18 7 chr4 14289039 14289919 -188038428 - MER54A LTR ERVL -3 898 9 395 192 0 14 chr4 14289948 14290021 -188038326 + MER96B DNA MER1_type? 182 253 -164 1434 230 7 0 chr4 14290041 14290350 -188037997 + L1M4 LINE L1 4899 5209 -937 194 319 138 35 chr4 14290350 14290582 -188037765 + L2 LINE L2 2722 2977 -337 1622 215 24 110 chr4 14290688 14290757 -188037590 - MLT1D LTR MaLR 0 505 432 1252 173 138 35 chr4 14290757 14291017 -188037330 + AluJo SINE Alu 2 288 -14 1622 215 24 110 chr4 14291017 14291500 -188036847 - MLT1D LTR MaLR -73 432 1 438 226 57 32 chr4 14291691 14291815 -188036532 - L2 LINE L2 -1 3312 3186 208 176 0 0 chr4 14291812 14291846 -188036501 - MER5B DNA MER1_type -41 137 104 * 429 258 306 0 chr4 14291971 14292200 -188036147 - MER5C DNA MER1_type 0 324 26 320 325 3 32 chr4 14293009 14293122 -188035225 + MIR SINE MIR 4 114 -94 2312 166 0 14 chr4 14293754 14294122 -188034225 + L1PA15 LINE L1 5803 6165 0 1551 175 38 0 chr4 14294122 14294413 -188033934 + MER65A LTR ERV1 128 429 -16 1782 165 88 20 chr4 14294755 14295106 -188033241 + THE1C LTR MaLR 1 375 0 2223 137 159 2 chr4 14295106 14295514 -188032833 + THE1C-int LTR MaLR 1 472 -1108 409 182 0 0 chr4 14295518 14295584 -188032763 + MSTA LTR MaLR 363 428 0 416 249 40 57 chr4 14295590 14295767 -188032580 - MER104 DNA Tc2 0 180 7 685 159 7 7 chr4 14296184 14296329 -188032018 + CT-rich Low_complexity Low_complexity 2 146 0 463 226 39 0 chr4 14298652 14298754 -188029593 - MIR SINE MIR -99 163 58 289 332 27 62 chr4 14298765 14299021 -188029326 + L2 LINE L2 2558 2804 -510 242 388 42 18 chr4 14299099 14299264 -188029083 + L2 LINE L2 2915 3083 -189 237 285 167 42 chr4 14299543 14299687 -188028660 - MER5A DNA MER1_type -16 171 1 1560 191 42 42 chr4 14299761 14300170 -188028177 - L1MA8 LINE L1 -2 6289 5881 2484 129 91 5 chr4 14300844 14301238 -188027109 + MSTA LTR MaLR 1 428 0 205 250 0 38 chr4 14301327 14301407 -188026940 + (TTA)n Simple_repeat Simple_repeat 2 78 0 4343 150 67 21 chr4 14301548 14302295 -188026052 + LTR39 LTR ERV1 3 783 0 414 277 39 30 chr4 14302608 14302801 -188025546 - MIR SINE MIR -62 200 4 900 194 51 0 chr4 14304791 14304966 -188023381 + MER5A DNA MER1_type 6 189 0 234 246 18 0 chr4 14305090 14305147 -188023200 - MIR SINE MIR -113 149 92 191 219 141 0 chr4 14305484 14305548 -188022799 + MIR SINE MIR 96 168 -94 709 293 40 87 chr4 14305847 14306297 -188022050 - MLT1J1 LTR MaLR 0 446 18 841 35 9 9 chr4 14306912 14307026 -188021321 + (TCTA)n Simple_repeat Simple_repeat 2 115 0 1075 194 144 90 chr4 14307207 14307496 -188020851 + MLT1A1 LTR MaLR 1 314 -51 2352 68 0 0 chr4 14307496 14307820 -188020527 - AluY SINE Alu 0 324 1 1075 194 144 90 chr4 14307820 14307875 -188020472 + MLT1A1 LTR MaLR 314 365 0 3956 188 49 23 chr4 14307875 14308656 -188019691 + MLT1A1-int LTR MaLR 1 801 -934 203 289 119 69 chr4 14308762 14308921 -188019426 + MIR SINE MIR 20 186 -76 2440 105 3 6 chr4 14309147 14309479 -188018868 - L1PA8A LINE L1 -4 6127 5797 211 360 20 10 chr4 14309520 14309620 -188018727 - L3 LINE CR1 -47 1530 1430 242 316 51 0 chr4 14310264 14310343 -188018004 - L2 LINE L2 -49 3223 3141 379 286 157 44 chr4 14311163 14311411 -188016936 - L3 LINE CR1 -177 1400 1125 277 209 93 35 chr4 14311705 14311791 -188016556 + L2 LINE L2 3223 3313 0 374 310 71 0 chr4 14312110 14312223 -188016124 + MER63A DNA MER1_type 90 210 0 554 298 63 21 chr4 14312358 14312549 -188015798 + MER20B DNA MER1_type 2 200 -19 291 306 0 0 chr4 14313468 14313553 -188014794 - L1MC4a LINE L1 -1897 5911 5827 1322 277 115 29 chr4 14313566 14314244 -188014103 - L1ME2 LINE L1 -1 6163 5463 297 0 0 0 chr4 14314015 14314048 -188014299 + (CA)n Simple_repeat Simple_repeat 2 34 0 554 277 69 84 chr4 14314048 14314280 -188014067 - L1MB4 LINE L1 -507 5673 5451 2601 121 5 27 chr4 14314280 14314652 -188013695 - THE1B LTR MaLR 0 364 1 554 277 69 84 chr4 14314652 14314687 -188013660 - L1MB4 LINE L1 -729 5451 5417 420 262 112 52 chr4 14314664 14315123 -188013224 - L1MEd LINE L1 -4747 1514 991 * 478 66 0 0 chr4 14315152 14315213 -188013134 - L1PB4 LINE L1 -11 6145 6085 860 142 14 0 chr4 14315213 14315361 -188012986 + L1 LINE L1 5159 5308 -838 501 306 149 23 chr4 14315363 14315758 -188012589 - L1MEd LINE L1 -5096 974 530 835 92 503 0 chr4 14315860 14316013 -188012334 - MER30 DNA MER1_type 0 230 1 430 77 0 31 chr4 14316554 14316619 -188011728 - L1MC1 LINE L1 -5 6328 6266 4258 150 19 3 chr4 14316627 14317300 -188011047 - L1MC1 LINE L1 -20 6313 5630 234 62 0 0 chr4 14317430 14317462 -188010885 + (TATATG)n Simple_repeat Simple_repeat 5 36 0 276 252 47 28 chr4 14317494 14317601 -188010746 - L1MC/D LINE L1 -2075 5733 5625 278 228 190 0 chr4 14317602 14317681 -188010666 - MLT1J2 LTR MaLR -290 160 67 218 355 0 0 chr4 14318108 14318170 -188010177 + MIR SINE MIR 63 124 -138 629 306 52 4 chr4 14318770 14319002 -188009345 + MIR SINE MIR 15 257 -5 493 222 56 24 chr4 14319087 14319213 -188009134 - MIR SINE MIR -94 168 39 521 301 150 9 chr4 14319381 14319594 -188008753 + MIR SINE MIR 16 258 -4 236 299 144 30 chr4 14319594 14319645 -188008702 + MLT1H LTR MaLR 1 45 -504 1743 163 3 16 chr4 14319645 14319958 -188008389 - AluJo SINE Alu -3 309 1 236 299 144 30 chr4 14319958 14320073 -188008274 + MLT1H LTR MaLR 45 186 -363 978 277 71 71 chr4 14320685 14321162 -188007185 + MER21B LTR ERV1 238 714 -149 233 73 0 24 chr4 14322052 14322093 -188006254 + (TG)n Simple_repeat Simple_repeat 2 41 0 1838 183 10 75 chr4 14322205 14322605 -188005742 - MLT1A2 LTR MaLR 0 374 1 21 0 0 0 chr4 14322962 14322983 -188005364 + AT_rich Low_complexity Low_complexity 1 21 0 711 236 179 5 chr4 14323388 14323600 -188004747 - MIR SINE MIR -2 260 12 180 281 115 43 chr4 14323626 14323765 -188004582 - MIR SINE MIR -53 209 61 865 185 47 47 chr4 14324559 14324791 -188003556 - MIR SINE MIR -26 236 5 21 0 0 0 chr4 14325769 14325790 -188002557 + AT_rich Low_complexity Low_complexity 1 21 0 186 205 0 0 chr4 14325882 14325921 -188002426 + L2 LINE L2 3270 3308 -5 539 273 100 45 chr4 14325948 14326168 -188002179 + MIR SINE MIR 26 257 -5 2366 79 0 10 chr4 14326178 14326481 -188001866 + AluY SINE Alu 1 300 -11 210 286 97 45 chr4 14326942 14327096 -188001251 + L2 LINE L2 2485 2646 -668 530 287 86 24 chr4 14327157 14327366 -188000981 + MIR SINE MIR 13 234 -28 197 243 14 0 chr4 14327393 14327463 -188000884 + (CACCAT)n Simple_repeat Simple_repeat 4 74 0 24 0 0 0 chr4 14327689 14327713 -188000634 + AT_rich Low_complexity Low_complexity 1 24 0 399 259 140 31 chr4 14327990 14328183 -188000164 + L3 LINE CR1 1353 1566 -11 746 136 0 42 chr4 14328683 14328801 -187999546 - AluJo SINE Alu -113 199 87 737 178 5 129 chr4 14328804 14329006 -187999341 - MER3 DNA MER1_type -79 130 1 865 225 6 11 chr4 14329503 14329681 -187998666 + MER3 DNA MER1_type 1 130 -79 298 363 6 35 chr4 14330296 14330467 -187997880 - MIR SINE MIR -71 191 26 293 350 0 10 chr4 14330487 14330590 -187997757 + MIR3 SINE MIR 1 102 -106 512 270 0 0 chr4 14330629 14330729 -187997618 + MER81 DNA DNA 15 114 0 429 280 20 13 chr4 14331176 14331326 -187997021 + LTR67 LTR ERVL 397 547 -10 183 314 0 0 chr4 14332581 14332632 -187995715 - L2 LINE L2 -4 3309 3259 * 272 241 170 27 chr4 14332599 14332711 -187995636 - MIR SINE MIR -16 246 119 1995 197 73 11 chr4 14333100 14333537 -187994810 + MLT1C LTR MaLR 4 467 0 234 0 0 0 chr4 14333610 14333636 -187994711 + (TTCA)n Simple_repeat Simple_repeat 4 29 0 293 313 100 31 chr4 14333883 14334034 -187994313 + L2 LINE L2 3026 3204 -109 1133 203 28 0 chr4 14334034 14334246 -187994101 - MER20 DNA MER1_type -1 218 1 293 313 100 31 chr4 14334246 14334353 -187993994 + L2 LINE L2 3204 3302 -11 197 368 13 46 chr4 14334400 14334552 -187993795 - L2 LINE L2 -182 3090 2944 21 0 0 0 chr4 14334915 14334936 -187993411 + AT_rich Low_complexity Low_complexity 1 21 0 309 288 26 26 chr4 14335260 14335368 -187992979 + MIR SINE MIR 2 106 -106 877 276 73 51 chr4 14335401 14335687 -187992660 - MLT1G1 LTR MaLR -20 575 276 4582 107 22 14 chr4 14335687 14336316 -187992031 - MER51A LTR ERV1 0 634 1 877 276 73 51 chr4 14336316 14336439 -187991908 - MLT1G1 LTR MaLR -319 276 157 824 177 44 6 chr4 14336494 14336652 -187991695 - AluJo SINE Alu -20 292 129 787 176 0 8 chr4 14336962 14337081 -187991266 - AluJo SINE Alu -193 119 2 585 263 38 0 chr4 14337149 14337309 -187991038 - MLT1G1 LTR MaLR -427 168 3 522 309 51 90 chr4 14337480 14338068 -187990279 + L2 LINE L2 2420 3004 -268 401 284 44 30 chr4 14338094 14338343 -187990004 - MLT1L LTR MaLR -9 606 335 2651 149 30 62 chr4 14338741 14339238 -187989109 - L1MB3 LINE L1 -12 6171 5691 299 284 71 31 chr4 14339290 14339417 -187988930 + L2 LINE L2 3140 3271 -1 2654 208 49 70 chr4 14339913 14340720 -187987627 - L1MC5 LINE L1 -26 7935 7149 1958 118 21 7 chr4 14340720 14341009 -187987338 - AluSp SINE Alu -17 296 4 2654 208 49 70 chr4 14341009 14341144 -187987203 - L1MC5 LINE L1 -812 7149 7013 264 154 13 39 chr4 14341190 14341268 -187987079 + CT-rich Low_complexity Low_complexity 4 79 0 292 301 32 0 chr4 14341999 14342092 -187986255 - L1MC5 LINE L1 -826 7135 7040 189 328 30 0 chr4 14343030 14343097 -187985250 - L2 LINE L2 -15 3257 3189 325 213 250 0 chr4 14343396 14343504 -187984843 + L2 LINE L2 3138 3272 0 270 0 0 0 chr4 14344749 14344779 -187983568 + (TG)n Simple_repeat Simple_repeat 1 30 0 * 366 23 0 0 chr4 14344778 14344821 -187983526 + (GA)n Simple_repeat Simple_repeat 1 43 0 866 236 10 15 chr4 14345127 14345322 -187983025 - MLT1A1 LTR MaLR -14 351 158 2153 133 41 32 chr4 14345623 14345992 -187982355 + THE1C LTR MaLR 4 375 0 4658 194 40 34 chr4 14346430 14348306 -187980041 - L1MC2 LINE L1 -121 6223 4332 245 322 87 34 chr4 14348394 14348543 -187979804 - L3 LINE CR1 -54 1523 1367 415 258 121 8 chr4 14348744 14348876 -187979471 + MIR SINE MIR 37 183 -79 522 291 44 33 chr4 14349086 14349268 -187979079 - MIR3 SINE MIR -16 192 9 1332 286 60 40 chr4 14349976 14350273 -187978074 + MLT1L LTR MaLR 1 291 -324 1977 202 52 39 chr4 14350273 14350734 -187977613 + MLT1C LTR MaLR 1 467 0 1332 286 60 40 chr4 14350734 14351033 -187977314 + MLT1L LTR MaLR 291 609 -6 330 217 43 11 chr4 14351037 14351129 -187977218 + MIR SINE MIR 97 191 -71 510 17 0 0 chr4 14351971 14352030 -187976317 + (CA)n Simple_repeat Simple_repeat 2 60 0 233 200 20 20 chr4 14352067 14352117 -187976230 - L2 LINE L2 -86 3186 3137 2317 162 55 0 chr4 14352174 14352556 -187975791 + MER57A LTR ERV1 1 403 0 199 296 61 10 chr4 14353759 14353857 -187974490 - MIR3 SINE MIR -42 166 64 399 305 19 76 chr4 14353977 14354187 -187974160 + MIR SINE MIR 37 234 -28 228 392 53 12 chr4 14355057 14355228 -187973119 + L2 LINE L2 2869 3046 -226 351 273 40 0 chr4 14355392 14355491 -187972856 + MIR SINE MIR 2 104 -158 229 286 0 29 chr4 14355538 14355608 -187972739 + L2 LINE L2 3205 3272 0 201 152 0 0 chr4 14355648 14355681 -187972666 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 222 260 0 65 chr4 14356561 14356638 -187971709 - L2 LINE L2 -5 3267 3196 236 310 0 60 chr4 14356739 14356839 -187971508 - MIR SINE MIR -112 150 57 344 338 76 31 chr4 14357221 14357644 -187970703 - L1ME4a LINE L1 -64 6057 5616 194 0 0 37 chr4 14357688 14357715 -187970632 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 196 188 21 21 chr4 14357884 14357932 -187970415 - MIR3 SINE MIR -8 200 153 8087 29 0 0 chr4 14358416 14360087 -187968260 - L1PA3 LINE L1 -50 6105 4435 282 305 94 54 chr4 14360507 14360858 -187967489 - L2 LINE L2 -568 2746 2382 237 293 0 0 chr4 14360978 14361036 -187967311 - L2 LINE L2 -8 3264 3207 359 347 13 13 chr4 14361171 14361321 -187967026 - L2 LINE L2 -5 3308 3159 857 280 72 13 chr4 14361388 14361763 -187966584 - LTR16B LTR ERVL -67 397 1 537 323 139 19 chr4 14361822 14362169 -187966178 - L2 LINE L2 -256 3057 2677 282 307 0 0 chr4 14363125 14363226 -187965121 + Charlie8 DNA MER1_type 72 172 -2245 216 0 0 0 chr4 14363263 14363287 -187965060 + (T)n Simple_repeat Simple_repeat 1 24 0 275 343 53 30 chr4 14363420 14363589 -187964758 + L2 LINE L2 2687 2859 -455 352 314 0 48 chr4 14364157 14364281 -187964066 + MIR SINE MIR 19 136 -72 198 0 0 0 chr4 14365186 14365208 -187963139 + (T)n Simple_repeat Simple_repeat 1 22 0 714 264 169 34 chr4 14365214 14365563 -187962784 + MLT1C LTR MaLR 72 467 0 357 308 171 21 chr4 14365584 14365818 -187962529 - MER102b DNA MER1_type 0 341 73 2733 111 8 3 chr4 14365889 14366251 -187962096 - THE1B LTR MaLR 0 364 1 3773 155 34 26 chr4 14366592 14367295 -187961052 - LTR1 LTR ERV1 0 785 77 611 98 0 0 chr4 14367623 14367705 -187960642 + L1PA10 LINE L1 6027 6108 -60 249 159 16 32 chr4 14367705 14367768 -187960579 - LTR1 LTR ERV1 -722 63 2 34 24 0 0 chr4 14368553 14368594 -187959753 + AT_rich Low_complexity Low_complexity 1 41 0 257 294 28 28 chr4 14368769 14368912 -187959435 - L1MC/D LINE L1 -1906 5902 5760 1040 113 7 0 chr4 14369648 14369789 -187958558 + L1PA10 LINE L1 6027 6168 0 21 0 0 0 chr4 14370348 14370369 -187957978 + AT_rich Low_complexity Low_complexity 1 21 0 1617 185 3 102 chr4 14370578 14370913 -187957434 - AluJb SINE Alu 0 302 1 335 336 83 23 chr4 14371803 14372020 -187956327 - MIR SINE MIR -13 249 20 1020 268 160 11 chr4 14372611 14373165 -187955182 - L2 LINE L2 -2 3311 2685 2867 164 64 29 chr4 14373208 14373251 -187955096 - MER21A LTR ERV1 0 931 891 189 0 0 0 chr4 14373251 14373272 -187955075 + (CCA)n Simple_repeat Simple_repeat 3 23 0 2867 164 64 29 chr4 14373272 14374025 -187954322 - MER21A LTR ERV1 -40 891 1 281 50 0 67 chr4 14374031 14374091 -187954256 + (TA)n Simple_repeat Simple_repeat 2 57 0 237 345 90 46 chr4 14374652 14374896 -187953451 - L2 LINE L2 -3 3269 3032 557 136 107 0 chr4 14375181 14375284 -187953063 + MER53 DNA DNA 1 114 -75 359 281 45 86 chr4 14376583 14376850 -187951497 - MIR SINE MIR -6 256 3 712 133 19 0 chr4 14377184 14377289 -187951058 + AluJb SINE Alu 2 108 -204 2561 127 70 70 chr4 14377332 14377850 -187950497 + LTR1 LTR ERV1 1 518 -267 544 300 83 9 chr4 14378554 14378784 -187949563 + MIR SINE MIR 16 262 0 290 335 61 24 chr4 14379642 14379806 -187948541 + MIR SINE MIR 22 191 -71 225 262 16 0 chr4 14380519 14380580 -187947767 + (CAATT)n Simple_repeat Simple_repeat 1 62 0 337 216 21 21 chr4 14380879 14380976 -187947371 + L1ME4a LINE L1 5830 5926 -195 422 310 14 21 chr4 14381531 14381676 -187946671 - MLT1H LTR MaLR -325 224 81 1094 232 146 34 chr4 14382112 14382495 -187945852 - MLT2F LTR ERVL -1 662 237 591 295 58 35 chr4 14382553 14382811 -187945536 - MLT2F LTR ERVL -396 267 4 2556 126 8 126 chr4 14383079 14383605 -187944742 - LTR24 LTR ERV1 -2 465 2 375 23 0 0 chr4 14383716 14383760 -187944587 + (TG)n Simple_repeat Simple_repeat 2 45 0 3481 169 22 45 chr4 14384798 14385532 -187942815 - L1MA10 LINE L1 -2 6332 5616 218 32 32 0 chr4 14385666 14385697 -187942650 + (CA)n Simple_repeat Simple_repeat 2 33 0 2286 102 0 16 chr4 14386771 14387085 -187941262 - AluSp SINE Alu -4 309 1 875 285 11 31 chr4 14388175 14388435 -187939912 + MIR SINE MIR 3 257 -5 926 216 95 54 chr4 14388767 14389082 -187939265 + MLT1H LTR MaLR 1 328 -221 234 274 68 41 chr4 14389304 14389377 -187938970 - L2 LINE L2 0 3272 3198 259 313 0 12 chr4 14389418 14389498 -187938849 + L2 LINE L2 3223 3301 -12 222 274 0 0 chr4 14389645 14389696 -187938651 + CT-rich Low_complexity Low_complexity 5 55 0 557 282 26 13 chr4 14390378 14390534 -187937813 + MER5B DNA MER1_type 20 177 -1 351 316 38 15 chr4 14390545 14390678 -187937669 - L2 LINE L2 -1 3271 3136 490 319 38 0 chr4 14390808 14390968 -187937379 - MIR SINE MIR -37 225 60 260 320 117 8 chr4 14391206 14391334 -187937013 - MIR3 SINE MIR -56 152 11 197 299 51 66 chr4 14391610 14391747 -187936600 - MIR SINE MIR -39 223 89 261 163 0 0 chr4 14391982 14392031 -187936316 + (TG)n Simple_repeat Simple_repeat 1 49 0 1771 249 15 36 chr4 14393598 14394075 -187934272 - MLT1C LTR MaLR 0 467 1 461 286 89 33 chr4 14394399 14394612 -187933735 - MIR SINE MIR 0 262 38 214 214 0 71 chr4 14395379 14395435 -187932912 - L2 LINE L2 0 3313 3262 31 0 0 0 chr4 14395808 14395839 -187932508 + AT_rich Low_complexity Low_complexity 1 31 0 289 0 49 0 chr4 14395851 14395892 -187932455 + (TTA)n Simple_repeat Simple_repeat 3 45 0 8133 21 0 0 chr4 14395892 14396818 -187931529 - L1PA3 LINE L1 -18 6137 5211 254 314 29 19 chr4 14396948 14397053 -187931294 - L2 LINE L2 -497 2817 2712 254 321 0 0 chr4 14397101 14397185 -187931162 - MIR SINE MIR -70 192 109 330 343 230 10 chr4 14397664 14397868 -187930479 - MIR SINE MIR -11 251 3 223 290 118 11 chr4 14397979 14398072 -187930275 - L2 LINE L2 -4 3268 3166 240 157 0 39 chr4 14398185 14398236 -187930111 - Tigger2 DNA MER2_type -386 2332 2284 250 290 0 0 chr4 14398529 14398598 -187929749 + MIR SINE MIR 109 177 -85 383 197 14 0 chr4 14398819 14398890 -187929457 - Tigger2 DNA MER2_type -2646 72 1 308 255 0 69 chr4 14398959 14399061 -187929286 - MLT1H LTR MaLR -2 547 453 390 281 0 11 chr4 14399281 14399370 -187928977 - MLT2E LTR ERVL -509 119 32 877 263 75 11 chr4 14399678 14399959 -187928388 - ERVL-E LTR ERVL -328 5436 5138 43415 35 21 1 chr4 14400018 14406050 -187922297 - L1PA2 LINE L1 0 6155 1 525 322 22 4 chr4 14406103 14406330 -187922017 - ERVL-E LTR ERVL -673 4981 4751 243 247 34 130 chr4 14406451 14406597 -187921750 + MLT1I-int LTR MaLR 1032 1163 -208 499 303 85 32 chr4 14406812 14407032 -187921315 + LTR33 LTR ERVL 60 260 -263 466 128 13 13 chr4 14407072 14407150 -187921197 - MADE1 DNA Mariner 0 80 3 350 303 48 28 chr4 14407155 14407300 -187921047 + LTR33 LTR ERVL 374 521 0 205 370 14 0 chr4 14407316 14407389 -187920958 + MIR SINE MIR 67 140 -68 336 268 37 0 chr4 14407487 14407569 -187920778 + L2 LINE L2 3186 3270 -2 905 124 0 51 chr4 14407623 14407760 -187920587 + AluJ SINE Alu 1 130 -172 322 41 0 0 chr4 14409067 14409111 -187919236 - MADE1 DNA Mariner -1 79 41 369 0 0 0 chr4 14410322 14410363 -187917984 + (T)n Simple_repeat Simple_repeat 1 41 0 489 308 127 9 chr4 14411774 14411995 -187916352 + MLT1I LTR MaLR 1 247 -162 * 759 215 193 34 chr4 14411992 14412459 -187915888 + MLT1E1 LTR MaLR 72 653 -1 289 273 149 19 chr4 14412696 14412850 -187915497 - LTR16A LTR ERVL 0 450 277 956 180 74 21 chr4 14414220 14414409 -187913938 + AluJ SINE Alu 105 303 -9 2026 118 18 0 chr4 14414418 14414697 -187913650 + AluSq SINE Alu 5 288 -25 906 226 20 15 chr4 14414974 14415169 -187913178 + MER58A DNA MER1_type 29 224 0 224 327 0 0 chr4 14415583 14415638 -187912709 - MIR SINE MIR -160 102 48 302 191 128 21 chr4 14416862 14416956 -187911391 + MIR SINE MIR 103 206 -56 297 0 0 0 chr4 14417977 14418010 -187910337 + (TG)n Simple_repeat Simple_repeat 2 34 0 326 339 71 71 chr4 14418044 14418327 -187910020 + MLT1K LTR MaLR 69 351 -237 317 244 12 37 chr4 14418405 14418487 -187909860 + MLT1K LTR MaLR 487 566 -22 192 300 42 58 chr4 14418873 14418993 -187909354 + MIR SINE MIR 89 206 -56 3558 170 15 70 chr4 14419013 14419742 -187908605 + LTR8 LTR ERV1 1 689 -2 237 174 0 0 chr4 14419943 14419989 -187908358 + LTR66 LTR ERVL 394 439 -171 242 173 77 0 chr4 14419990 14420042 -187908305 + L1MD3 LINE L1 6612 6667 -1328 275 247 47 0 chr4 14420057 14420142 -187908205 + L1MC4 LINE L1 6614 6702 -1340 244 227 0 62 chr4 14420149 14420246 -187908101 - L1MC4 LINE L1 -1339 6703 6613 217 317 55 48 chr4 14420645 14420790 -187907557 - MIR SINE MIR -46 216 71 817 225 26 62 chr4 14421667 14421894 -187906453 + MER20 DNA MER1_type 1 219 0 462 302 137 0 chr4 14422195 14422377 -187905970 + MIR SINE MIR 22 228 -34 247 273 136 0 chr4 14422491 14422579 -187905768 - MER5B DNA MER1_type -73 105 6 332 264 76 49 chr4 14422583 14422727 -187905620 - MIR3 SINE MIR -48 160 13 449 291 55 6 chr4 14422942 14423107 -187905240 - MIR SINE MIR -21 241 69 440 201 14 101 chr4 14423151 14423290 -187905057 + L2 LINE L2 3187 3313 0 2462 148 48 10 chr4 14423313 14423725 -187904622 - MSTA LTR MaLR 0 428 1 2001 111 20 17 chr4 14424026 14424324 -187904023 - AluY SINE Alu -12 299 1 2123 160 9 15 chr4 14424344 14424681 -187903666 + MER1B DNA MER1_type 1 335 -2 304 228 51 59 chr4 14425129 14425250 -187903097 - MIR SINE MIR -62 146 33 1685 230 139 19 chr4 14425288 14425357 -187902990 + MER77 LTR ERV1 55 114 -491 2189 118 3 0 chr4 14425357 14425661 -187902686 - AluSx SINE Alu -7 305 1 1685 230 139 19 chr4 14425661 14426052 -187902295 + MER77 LTR ERV1 114 570 -35 2405 175 11 30 chr4 14426163 14426598 -187901749 + MSTB1 LTR MaLR 4 430 -2 759 184 7 14 chr4 14427240 14427387 -187900960 - L1MA9 LINE L1 0 6312 6167 1512 178 40 0 chr4 14427390 14427688 -187900659 + L1MA9 LINE L1 5838 6147 -165 369 0 0 0 chr4 14427691 14427732 -187900615 + (CA)n Simple_repeat Simple_repeat 2 42 0 378 244 85 30 chr4 14427741 14427905 -187900442 - MER5B DNA MER1_type -3 175 3 744 233 133 112 chr4 14429241 14429678 -187898669 - MLT1J LTR MaLR -65 446 1 450 79 0 0 chr4 14430146 14430209 -187898138 + (TA)n Simple_repeat Simple_repeat 1 63 0 645 177 52 0 chr4 14430352 14430486 -187897861 + MER2 DNA MER2_type 16 156 -170 1148 258 59 10 chr4 14430694 14431204 -187897143 + MLT1G3 LTR MaLR 1 590 0 225 298 18 0 chr4 14431689 14431746 -187896601 - L3 LINE CR1 -360 1217 1160 674 130 61 0 chr4 14431770 14431885 -187896462 - L1MB4 LINE L1 0 6180 6059 225 189 0 38 chr4 14431885 14431938 -187896409 - Alu SINE Alu 0 301 251 224 284 90 0 chr4 14432037 14432104 -187896243 - L3 LINE CR1 -514 1063 991 219 311 0 0 chr4 14432263 14432337 -187896010 - MIR SINE MIR -13 249 176 217 271 51 0 chr4 14432697 14432756 -187895591 + L2 LINE L2 3245 3306 -7 207 0 0 0 chr4 14432957 14432980 -187895367 + (T)n Simple_repeat Simple_repeat 1 23 0 2897 133 11 32 chr4 14433013 14433455 -187894892 + Tigger2a DNA MER2_type 1 433 -1 273 306 65 43 chr4 14434273 14434459 -187893888 + MIR SINE MIR 6 195 -67 227 364 53 8 chr4 14434922 14435054 -187893293 - MIR SINE MIR -41 221 84 320 258 89 9 chr4 14435860 14435979 -187892368 - MIR3 SINE MIR 0 208 79 2137 139 0 0 chr4 14436300 14436602 -187891745 + AluSx SINE Alu 6 307 -5 2942 171 26 17 chr4 14437333 14437871 -187890476 - L1MB2 LINE L1 -10 6161 5619 1975 135 7 0 chr4 14438001 14438306 -187890041 - AluSx SINE Alu 0 307 1 286 182 36 0 chr4 14438604 14438659 -187889688 + MER20 DNA MER1_type 114 170 -49 292 281 22 11 chr4 14439163 14439252 -187889095 - L2 LINE L2 0 3272 3183 327 78 0 0 chr4 14439327 14439378 -187888969 + (TG)n Simple_repeat Simple_repeat 2 52 0 707 237 93 47 chr4 14439610 14439883 -187888464 - MER21B LTR ERV1 -2 861 576 3191 135 15 25 chr4 14439883 14440425 -187887922 + LTR49 LTR ERV1 1 536 -59 1345 201 42 40 chr4 14440425 14440779 -187887568 - MER4D LTR ERV1 0 903 549 1804 151 4 4 chr4 14440815 14441093 -187887254 - MER49 LTR ERV1 -645 278 1 340 234 65 0 chr4 14441093 14441152 -187887195 + LTR49 LTR ERV1 530 593 -2 1869 203 38 129 chr4 14441165 14441791 -187886556 - MER21B LTR ERV1 -294 569 1 424 311 46 46 chr4 14441810 14441912 -187886435 + MIR SINE MIR 16 120 -142 2564 185 63 115 chr4 14441912 14442679 -187885668 + LTR8A LTR ERV1 1 727 0 424 311 46 46 chr4 14442679 14442772 -187885575 + MIR SINE MIR 119 211 -51 340 298 124 12 chr4 14443242 14443403 -187884944 + MIR SINE MIR 11 189 -73 1678 150 41 103 chr4 14443945 14444332 -187884015 - MLT1A1 LTR MaLR 0 365 3 519 305 90 30 chr4 14444625 14444858 -187883489 - MIR SINE MIR -5 257 11 241 386 36 18 chr4 14445032 14445234 -187883113 + L2 LINE L2 2269 2477 -837 2591 157 54 5 chr4 14445234 14445642 -187882705 - MSTA LTR MaLR 0 428 1 241 386 36 18 chr4 14445642 14445662 -187882685 + L2 LINE L2 2477 2495 -819 1278 182 16 4 chr4 14447496 14447743 -187880604 - L1PA15 LINE L1 -1 6164 5915 2712 164 9 2 chr4 14447972 14448424 -187879923 - L1PA13 LINE L1 0 6163 5709 6227 42 3 1 chr4 14448476 14449184 -187879163 + L1PA5 LINE L1 5442 6150 -4 343 259 14 109 chr4 14450092 14450239 -187878108 - MIR SINE MIR -101 161 29 320 355 31 0 chr4 14452149 14452320 -187876027 + MIR SINE MIR 4 179 -63 389 77 31 0 chr4 14453134 14453199 -187875148 - L1P LINE L1 -838 5330 5264 3337 102 7 9 chr4 14453199 14453655 -187874692 + L1PA13 LINE L1 5703 6160 -3 261 0 0 0 chr4 14454379 14454408 -187873939 + (TG)n Simple_repeat Simple_repeat 2 30 0 271 310 225 14 chr4 14454492 14454787 -187873560 - L2 LINE L2 -243 3070 2714 225 347 20 0 chr4 14455496 14455594 -187872753 - MIR SINE MIR -1 261 162 204 326 67 0 chr4 14456359 14456448 -187871899 - L3 LINE CR1 -222 1355 1261 1519 184 21 3 chr4 14456570 14456853 -187871494 + AluJo SINE Alu 1 288 -24 303 264 182 9 chr4 14457548 14457658 -187870689 - MIR SINE MIR -64 144 16 259 276 31 31 chr4 14458445 14458543 -187869804 + MIR SINE MIR 32 129 -133 1812 215 104 7 chr4 14458713 14459136 -187869211 - MLT1C LTR MaLR 0 467 4 354 328 76 12 chr4 14461045 14461216 -187867131 - MIR SINE MIR -33 229 48 227 300 100 0 chr4 14461438 14461508 -187866839 - MIR SINE MIR -96 112 36 449 259 56 7 chr4 14461737 14461880 -187866467 + LTR67 LTR ERVL 408 557 0 232 333 46 9 chr4 14462553 14462661 -187865686 + MIR SINE MIR 1 112 -150 519 282 23 50 chr4 14463190 14463410 -187864937 + MIR SINE MIR 49 262 0 207 0 0 0 chr4 14463675 14463698 -187864649 + (T)n Simple_repeat Simple_repeat 1 23 0 2199 117 0 0 chr4 14463824 14464122 -187864225 - AluSx SINE Alu -14 298 1 728 177 48 0 chr4 14464294 14464418 -187863929 - FLAM_C SINE Alu -1 132 3 266 288 224 0 chr4 14464433 14464558 -187863789 + L2 LINE L2 2891 3043 -229 2170 136 0 0 chr4 14464902 14465204 -187863143 - AluSx SINE Alu -10 302 1 29 28 0 0 chr4 14465809 14465845 -187862502 + AT_rich Low_complexity Low_complexity 1 36 0 1020 145 10 97 chr4 14465852 14466059 -187862288 - AluJo SINE Alu -30 282 94 189 0 0 0 chr4 14466264 14466285 -187862062 + (TTC)n Simple_repeat Simple_repeat 1 21 0 718 227 27 41 chr4 14466285 14466505 -187861842 - L1MD3 LINE L1 -6 7989 7773 831 237 6 0 chr4 14466530 14466707 -187861640 - AluJo SINE Alu -12 300 123 207 0 0 0 chr4 14466708 14466731 -187861616 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 2106 247 65 19 chr4 14466737 14467381 -187860966 - L1MC4a LINE L1 -223 7585 6912 317 237 0 54 chr4 14468074 14468167 -187860180 + MIR3 SINE MIR 114 201 -7 267 227 0 0 chr4 14468693 14468759 -187859588 + CT-rich Low_complexity Low_complexity 4 69 0 775 229 81 18 chr4 14469162 14469385 -187858962 + MIR SINE MIR 5 241 -21 373 389 79 5 chr4 14469540 14469756 -187858591 - L3 LINE CR1 -85 1492 1261 478 283 146 29 chr4 14469775 14470090 -187858257 - L3 LINE CR1 -84 1493 1142 2515 140 20 0 chr4 14470646 14471003 -187857344 + THE1B LTR MaLR 1 364 0 10978 105 13 60 chr4 14471005 14472659 -187855688 + THE1B-int LTR MaLR 4 1580 0 2330 149 28 6 chr4 14472659 14473015 -187855332 + THE1B LTR MaLR 1 364 0 1741 189 0 3 chr4 14473270 14473572 -187854775 + AluJb SINE Alu 4 304 -8 8206 23 0 0 chr4 14474514 14475457 -187852890 - L1PA3 LINE L1 0 6155 5211 257 314 29 19 chr4 14475587 14475692 -187852655 - L2 LINE L2 -497 2817 2712 256 321 0 0 chr4 14475740 14475824 -187852523 - MIR SINE MIR -70 192 109 352 343 230 10 chr4 14476303 14476507 -187851840 - MIR SINE MIR -11 251 3 226 290 118 11 chr4 14476618 14476711 -187851636 - L2 LINE L2 -4 3268 3166 229 163 0 0 chr4 14476824 14476867 -187851480 - Tigger2 DNA MER2_type -386 2332 2290 254 290 0 0 chr4 14477168 14477237 -187851110 + MIR SINE MIR 109 177 -85 356 191 15 0 chr4 14477461 14477529 -187850818 - Tigger2 DNA MER2_type -2649 69 1 274 255 0 69 chr4 14477598 14477700 -187850647 - MLT1H LTR MaLR -2 547 453 371 270 0 11 chr4 14477920 14478009 -187850338 - MLT2E LTR ERVL -509 119 32 764 263 75 11 chr4 14478317 14478598 -187849749 - ERVL-E LTR ERVL -328 5436 5138 40631 35 21 1 chr4 14478657 14484689 -187843658 - L1PA2 LINE L1 0 6155 1 437 310 22 22 chr4 14485450 14485634 -187842713 + LTR33 LTR ERVL 60 243 -278 427 128 13 13 chr4 14485709 14485787 -187842560 - MADE1 DNA Mariner 0 80 3 302 303 48 28 chr4 14485792 14485937 -187842410 + LTR33 LTR ERVL 374 521 0 212 370 14 0 chr4 14485953 14486026 -187842321 + MIR SINE MIR 67 140 -68 337 268 37 0 chr4 14486124 14486206 -187842141 + L2 LINE L2 3186 3270 -2 871 124 0 51 chr4 14486260 14486397 -187841950 + FLAM_C SINE Alu 1 130 -13 301 26 0 0 chr4 14487704 14487743 -187840604 - MADE1 DNA Mariner -1 79 41 243 0 0 0 chr4 14488958 14488985 -187839362 + (T)n Simple_repeat Simple_repeat 1 27 0 417 308 127 9 chr4 14490401 14490622 -187837725 + MLT1I LTR MaLR 1 247 -162 380 181 14 0 chr4 14490667 14490739 -187837608 + MLT1E1 LTR MaLR 166 238 -416 467 94 0 0 chr4 14490739 14490803 -187837544 + MLT1E1 LTR MaLR 200 263 -391 702 222 155 4 chr4 14490847 14491085 -187837262 + MLT1E1 LTR MaLR 351 653 -1 236 343 112 12 chr4 14491320 14491571 -187836776 - LTR16A LTR ERVL 0 450 175 211 303 30 15 chr4 14492735 14492801 -187835546 - MIR3 SINE MIR -34 174 108 527 240 35 23 chr4 14492823 14492994 -187835353 + MLT1B LTR MaLR 3 175 -215 345 109 0 0 chr4 14493004 14493059 -187835288 + (TC)n Simple_repeat Simple_repeat 1 55 0 1008 224 0 0 chr4 14493061 14493262 -187835085 + MLT1B LTR MaLR 190 390 0 224 345 0 17 chr4 14493354 14493470 -187834877 + GA-rich Low_complexity Low_complexity 4 117 0 205 242 20 121 chr4 14495231 14495330 -187833017 + MIR SINE MIR 72 160 -102 731 243 27 5 chr4 14495424 14495609 -187832738 + MER5A DNA MER1_type 1 189 0 345 303 174 13 chr4 14495612 14495767 -187832580 + MIR SINE MIR 78 257 -5 180 0 0 0 chr4 14496733 14496753 -187831594 + (T)n Simple_repeat Simple_repeat 1 20 0 181 250 77 19 chr4 14497041 14497093 -187831254 - L2 LINE L2 0 3313 3259 238 310 28 0 chr4 14497538 14497609 -187830738 - L2 LINE L2 -5 3308 3236 294 319 25 13 chr4 14498570 14498727 -187829620 + (TCTCTG)n Simple_repeat Simple_repeat 2 160 0 225 376 6 6 chr4 14498754 14498919 -187829428 + CT-rich Low_complexity Low_complexity 2 166 0 407 313 13 27 chr4 14499110 14499260 -187829087 - MIR3 SINE MIR -7 201 54 395 216 73 103 chr4 14500029 14500233 -187828114 + MER106A DNA MER1_type 2 199 -37 539 205 9 0 chr4 14502085 14502197 -187826150 + MIR SINE MIR 86 198 -64 2364 171 28 2 chr4 14502201 14502674 -187825673 - L1MA8 LINE L1 -936 5210 4726 * 4505 157 43 27 chr4 14502671 14502826 -187825521 + L1MA8 LINE L1 5177 5328 -963 1556 196 7 11 chr4 14502826 14503141 -187825206 + AluSx SINE Alu 14 312 0 4505 157 43 27 chr4 14503141 14504028 -187824319 + L1MA8 LINE L1 5328 6236 -55 634 336 67 30 chr4 14505282 14505612 -187822735 - L2 LINE L2 -338 2976 2635 21 0 0 0 chr4 14505660 14505681 -187822666 + AT_rich Low_complexity Low_complexity 1 21 0 1345 206 41 25 chr4 14506769 14507230 -187821117 - MLT2B2 LTR ERVL 0 515 1 298 378 19 7 chr4 14507386 14507577 -187820770 - MIR SINE MIR -56 206 15 254 268 73 57 chr4 14508026 14508149 -187820198 - MIR SINE MIR -67 141 17 582 104 17 17 chr4 14508352 14508467 -187819880 + (TTCC)n Simple_repeat Simple_repeat 2 116 0 3650 153 146 40 chr4 14508676 14509491 -187818856 - MER4D LTR ERV1 0 903 3 287 330 75 0 chr4 14509491 14509597 -187818750 - L2 LINE L2 -52 3220 3107 320 319 62 0 chr4 14510546 14510659 -187817688 - MIR SINE MIR -53 209 90 519 229 46 46 chr4 14511488 14511641 -187816706 + MIR SINE MIR 23 175 -87 621 242 13 19 chr4 14513178 14513335 -187815012 - MLT1J2 LTR MaLR -252 198 43 229 338 78 60 chr4 14513340 14513621 -187814726 + L2 LINE L2 2200 2485 -829 778 256 58 22 chr4 14513684 14513907 -187814440 + MIR SINE MIR 12 242 -20 180 111 0 0 chr4 14514313 14514340 -187814007 + (CACCAT)n Simple_repeat Simple_repeat 4 30 0 959 214 130 101 chr4 14514822 14515337 -187813010 + MLT1F1 LTR MaLR 3 557 -10 238 272 78 29 chr4 14515880 14515983 -187812364 - MIR SINE MIR -5 257 150 362 380 80 12 chr4 14516423 14516673 -187811674 + L3 LINE CR1 1303 1569 -8 926 205 87 111 chr4 14516984 14517364 -187810983 + MLT2D LTR ERVL 1 372 -42 393 22 0 0 chr4 14517364 14517410 -187810937 + (TCTA)n Simple_repeat Simple_repeat 3 48 0 926 205 87 111 chr4 14517410 14517453 -187810894 + MLT2D LTR ERVL 372 414 0 240 366 9 36 chr4 14518703 14518815 -187809532 + L2 LINE L2 2378 2486 -828 412 320 115 15 chr4 14519788 14520178 -187808169 - ERVL LTR ERVL -623 5141 4713 2143 71 7 3 chr4 14521818 14522114 -187806233 + L1PA7 LINE L1 5858 6154 0 294 29 0 0 chr4 14523030 14523065 -187805282 + (CA)n Simple_repeat Simple_repeat 2 36 0 288 288 122 7 chr4 14523192 14523331 -187805016 - L1MC/D LINE L1 -2039 5769 5615 4441 39 2 0 chr4 14524969 14525508 -187802839 + L1PA4 LINE L1 5614 6153 -2 5321 72 11 23 chr4 14525855 14526591 -187801756 - L1PA7 LINE L1 -2 6152 5426 333 0 0 0 chr4 14526983 14527020 -187801327 + (CA)n Simple_repeat Simple_repeat 2 38 0 2357 149 36 48 chr4 14527021 14527195 -187801152 + L1MA5A LINE L1 5797 5972 -325 679 220 0 0 chr4 14527195 14527313 -187801034 + FLAM_C SINE Alu 1 118 -15 2357 149 36 48 chr4 14527313 14527641 -187800706 + L1MA5A LINE L1 5972 6293 -4 500 331 37 34 chr4 14528279 14528575 -187799772 + LTR16A1 LTR ERVL 147 443 -14 210 204 45 0 chr4 14528615 14528659 -187799688 + L2 LINE L2 3227 3272 0 1975 194 60 34 chr4 14528937 14529354 -187798993 + MSTA LTR MaLR 1 428 0 281 334 50 68 chr4 14529480 14529756 -187798591 + L2 LINE L2 2722 2992 -280 26 0 0 0 chr4 14530918 14530944 -187797403 + AT_rich Low_complexity Low_complexity 1 26 0 314 260 114 24 chr4 14531458 14531581 -187796766 + MLT1J2 LTR MaLR 280 413 -37 417 276 127 56 chr4 14532356 14532449 -187795898 + L1M4 LINE L1 2130 2215 -3931 2313 93 0 0 chr4 14532449 14532749 -187795598 - AluY SINE Alu -11 300 1 417 276 127 56 chr4 14532749 14533050 -187795297 + L1M4 LINE L1 2215 2552 -3594 401 301 107 24 chr4 14533115 14533350 -187794997 + L1M4 LINE L1 2676 2941 -3205 1975 143 24 0 chr4 14533350 14533637 -187794710 + AluSx SINE Alu 1 294 -18 401 301 107 24 chr4 14533637 14533690 -187794657 + L1M4 LINE L1 2941 2988 -3158 225 264 28 14 chr4 14533980 14534052 -187794295 + (CATATA)n Simple_repeat Simple_repeat 6 78 0 324 383 0 0 chr4 14534231 14534351 -187793996 + L1ME LINE L1 5604 5723 -447 447 289 174 64 chr4 14534776 14535185 -187793162 - L2 LINE L2 -3 3310 2857 218 245 0 20 chr4 14537312 14537361 -187790986 - MIR3 SINE MIR -13 195 148 232 367 55 23 chr4 14537722 14537850 -187790497 + MIR SINE MIR 20 151 -111 1920 153 54 6 chr4 14539995 14540349 -187787998 + MLT1B LTR MaLR 13 383 -7 215 300 62 12 chr4 14541342 14541422 -187786925 + MIR SINE MIR 120 203 -59 399 219 74 60 chr4 14541423 14541638 -187786709 + MER89 LTR ERV1 2 219 -340 2197 211 16 21 chr4 14542022 14542534 -187785813 + MER89 LTR ERV1 51 559 0 1879 143 143 13 chr4 14542615 14542994 -187785353 + MSTA LTR MaLR 1 428 0 2329 61 11 0 chr4 14543270 14543580 -187784767 - AluY SINE Alu 0 313 1 220 239 15 15 chr4 14544238 14544305 -187784042 + CT-rich Low_complexity Low_complexity 4 70 0 2204 56 42 7 chr4 14545049 14545334 -187783013 - AluY SINE Alu -16 295 1 300 308 85 15 chr4 14545489 14545619 -187782728 + L2 LINE L2 3121 3259 -13 247 313 61 25 chr4 14546078 14546241 -187782106 - LTR16B LTR ERVL -162 302 134 288 236 18 45 chr4 14546494 14546604 -187781743 - HERV16 LTR ERVL -103 4893 4787 967 333 33 50 chr4 14546904 14547767 -187780580 - ERVL LTR ERVL -747 4249 3715 721 386 26 22 chr4 14547934 14548735 -187779612 - ERVL LTR ERVL -1967 3797 2994 682 354 95 11 chr4 14548848 14549506 -187778841 - ERVL LTR ERVL -2542 2454 1742 1098 317 58 20 chr4 14549864 14550918 -187777429 - ERVL LTR ERVL -3738 1258 127 415 307 103 39 chr4 14551031 14551325 -187777022 - LTR16A LTR ERVL -3 447 98 258 360 9 18 chr4 14551682 14551796 -187776551 + MIR SINE MIR 13 125 -137 255 292 14 14 chr4 14551846 14551918 -187776429 + MIR SINE MIR 25 96 -112 758 280 78 4 chr4 14552775 14553007 -187775340 - MIR SINE MIR -1 261 13 264 282 0 14 chr4 14553161 14553232 -187775115 + (CA)n Simple_repeat Simple_repeat 2 71 0 1445 206 25 13 chr4 14553299 14553614 -187774733 - MLT1E LTR MaLR 0 593 275 1195 200 88 57 chr4 14553641 14554112 -187774235 - LTR49 LTR ERV1 -23 572 168 8778 155 37 1 chr4 14554219 14556598 -187771749 - L1PA13 LINE L1 -19 6144 3701 2284 174 0 2 chr4 14556624 14557021 -187771326 - MER57A LTR ERV1 -4 399 4 470 231 17 34 chr4 14557067 14557184 -187771163 - MLT1E LTR MaLR -428 165 51 277 339 66 0 chr4 14557430 14557551 -187770796 + MIR SINE MIR 49 177 -85 484 267 9 0 chr4 14558294 14558399 -187769948 - MER115 DNA AcHobo -434 259 154 224 328 34 28 chr4 14559634 14559804 -187768543 - MIR SINE MIR -31 177 6 550 320 139 34 chr4 14559814 14560345 -187768002 - MLT1G1 LTR MaLR -8 587 1 1571 273 19 58 chr4 14560496 14561063 -187767284 - MLT1H LTR MaLR -2 547 3 183 321 71 36 chr4 14561388 14561487 -187766860 - MIR3 SINE MIR -15 193 84 2298 145 8 23 chr4 14561487 14561880 -187766467 - MLT1B LTR MaLR -2 388 2 183 321 71 36 chr4 14561880 14561948 -187766399 - MIR3 SINE MIR -124 84 20 345 291 115 20 chr4 14562548 14562696 -187765651 + MIR SINE MIR 10 171 -91 606 273 88 19 chr4 14562713 14562929 -187765418 + MIR SINE MIR 22 252 -10 253 287 83 64 chr4 14562977 14563134 -187765213 - MIR3 SINE MIR -16 192 33 263 273 164 0 chr4 14563275 14563385 -187764962 - MIR SINE MIR -35 227 100 189 276 130 73 chr4 14563890 14564013 -187764334 - MIR SINE MIR -63 145 16 304 316 44 7 chr4 14564342 14564478 -187763869 - MIR3 SINE MIR -4 204 64 353 322 41 18 chr4 14564776 14564936 -187763411 - MIR3 SINE MIR -65 143 10 288 238 158 10 chr4 14565063 14565164 -187763183 + MIR SINE MIR 31 146 -116 250 264 0 0 chr4 14565561 14565627 -187762720 + MIR SINE MIR 86 138 -70 561 285 169 7 chr4 14566039 14566334 -187762013 - LTR16C LTR ERVL -2 489 147 2027 162 8 11 chr4 14566617 14566994 -187761353 - MLT1B LTR MaLR 0 390 15 560 318 37 54 chr4 14567026 14567263 -187761084 + L2 LINE L2 2930 3161 -152 294 29 0 0 chr4 14567263 14567298 -187761049 + (CA)n Simple_repeat Simple_repeat 1 35 0 560 318 37 54 chr4 14567298 14567412 -187760935 + L2 LINE L2 3161 3275 -38 240 274 98 59 chr4 14568672 14568774 -187759573 - MIR SINE MIR -68 140 35 504 141 82 0 chr4 14569240 14569315 -187759032 + MLT2B1 LTR ERVL 370 437 -117 258 105 0 0 chr4 14569315 14569353 -187758994 + (TG)n Simple_repeat Simple_repeat 1 38 0 504 141 82 0 chr4 14569353 14569390 -187758957 + MLT2B1 LTR ERVL 437 554 0 266 303 163 11 chr4 14569433 14569611 -187758736 - MLT1J2 LTR MaLR -166 284 80 2283 184 19 7 chr4 14569776 14570195 -187758152 - MSTA LTR MaLR -4 424 1 205 307 160 0 chr4 14570501 14570576 -187757771 - L2 LINE L2 -1 3271 3185 576 229 8 0 chr4 14570622 14570744 -187757603 + MER58B DNA MER1_type 218 340 -1 881 234 18 60 chr4 14570980 14571198 -187757149 - MIR SINE MIR -25 237 29 1228 129 0 62 chr4 14572804 14573032 -187755315 + AluSg/x SINE Alu 103 318 0 2765 195 31 9 chr4 14573753 14574297 -187754050 - MER74A LTR ERVL -2 556 1 2527 198 15 5 chr4 14576047 14576638 -187751709 - L1 LINE L1 -1540 4606 4010 205 267 47 58 chr4 14577012 14577098 -187751249 - MIR3 SINE MIR -7 201 117 287 322 52 0 chr4 14577271 14577386 -187750961 + L3 LINE CR1 1291 1411 -166 254 389 60 28 chr4 14577812 14578028 -187750319 + MIR SINE MIR 2 224 -38 408 307 96 6 chr4 14578896 14579062 -187749285 - MIR3 SINE MIR -1 207 32 185 306 16 16 chr4 14580424 14580486 -187747861 - L2 LINE L2 -11 3261 3200 197 359 109 0 chr4 14580541 14580633 -187747714 + L2 LINE L2 3116 3217 -55 469 224 9 0 chr4 14580645 14580752 -187747595 + MER94 DNA DNA 6 113 -21 204 179 0 0 chr4 14581118 14581157 -187747190 + A-rich Low_complexity Low_complexity 1 39 0 3357 87 15 4 chr4 14581805 14582276 -187746071 - L1PA8A LINE L1 0 6131 5656 207 0 0 0 chr4 14582342 14582365 -187745982 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 267 54 0 0 chr4 14582693 14582730 -187745617 + (TG)n Simple_repeat Simple_repeat 2 38 0 378 199 51 45 chr4 14582858 14583034 -187745313 + (TATG)n Simple_repeat Simple_repeat 4 180 0 285 306 66 16 chr4 14583057 14583178 -187745169 - L3 LINE CR1 -420 1157 1031 184 342 107 48 chr4 14583243 14583555 -187744792 + L2 LINE L2 1704 1996 -1318 3112 188 7 21 chr4 14583555 14584168 -187744179 + MER6A DNA MER2_type 1 604 -1 184 342 107 48 chr4 14584168 14584437 -187743910 + L2 LINE L2 1996 2319 -995 217 291 29 48 chr4 14584554 14584657 -187743690 + MIR SINE MIR 141 241 -21 294 258 45 0 chr4 14584902 14584991 -187743356 - MIR SINE MIR -111 151 59 1368 116 59 13 chr4 14584993 14585282 -187743065 - LTR24C LTR ERV1 -9 626 305 1385 163 170 14 chr4 14585293 14585575 -187742772 + MER1B DNA MER1_type 6 331 -8 1623 113 22 64 chr4 14585586 14585897 -187742450 - LTR24C LTR ERV1 -336 299 2 246 298 32 65 chr4 14586354 14586478 -187741869 - MIR SINE MIR -57 205 86 311 279 66 22 chr4 14586942 14587078 -187741269 - MIR3 SINE MIR -2 206 65 374 320 89 36 chr4 14587460 14587707 -187740640 - MIR SINE MIR 0 262 3 294 280 151 0 chr4 14588023 14588116 -187740231 + MLT1E1 LTR MaLR 1 107 -547 598 304 104 29 chr4 14588563 14588908 -187739439 + MLT1I LTR MaLR 32 402 -7 229 170 19 19 chr4 14589004 14589057 -187739290 + (CAA)n Simple_repeat Simple_repeat 2 54 0 25 31 0 0 chr4 14589572 14589604 -187738743 + AT_rich Low_complexity Low_complexity 1 32 0 490 316 78 42 chr4 14589645 14589838 -187738509 + MIR3 SINE MIR 5 204 -4 897 253 136 82 chr4 14589901 14590422 -187737925 + MLT1H LTR MaLR 1 549 0 670 269 124 29 chr4 14590991 14591297 -187737050 - MLT1E LTR MaLR -9 584 217 2927 195 45 6 chr4 14591404 14592050 -187736297 - L1PB4 LINE L1 0 6156 5486 284 347 77 39 chr4 14592081 14592526 -187735821 + L2 LINE L2 2585 3052 -220 804 205 68 0 chr4 14593207 14593368 -187734979 - MER5A DNA MER1_type 0 189 18 229 280 32 0 chr4 14593617 14593710 -187734637 + MLT1L LTR MaLR 518 613 -2 998 256 23 44 chr4 14595016 14595403 -187732944 + MER20B DNA MER1_type 17 395 -388 227 315 171 0 chr4 14596157 14596268 -187732079 + MIR SINE MIR 25 154 -108 180 229 181 24 chr4 14597026 14597109 -187731238 - MIR SINE MIR -146 116 21 241 234 16 0 chr4 14598587 14598651 -187729696 + MIR SINE MIR 57 121 -141 262 274 283 0 chr4 14598675 14598901 -187729446 - L2 LINE L2 -583 2731 2442 384 239 60 84 chr4 14599577 14599744 -187728603 - MIR SINE MIR -21 241 79 33 0 0 0 chr4 14600938 14600971 -187727376 + AT_rich Low_complexity Low_complexity 1 33 0 362 251 65 47 chr4 14601581 14601744 -187726603 - MIR SINE MIR -60 148 25 180 220 40 40 chr4 14602005 14602055 -187726292 - L2 LINE L2 -2 3311 3262 400 290 67 55 chr4 14602943 14603023 -187725324 - MIR SINE MIR -3 259 181 1952 150 23 0 chr4 14603023 14603323 -187725024 - AluSq SINE Alu -6 307 1 400 290 67 55 chr4 14603323 14603480 -187724867 - MIR SINE MIR -81 181 19 1227 216 0 24 chr4 14604165 14604452 -187723895 - MLT1C LTR MaLR 0 467 188 820 191 51 33 chr4 14604452 14604667 -187723680 - MLT1C LTR MaLR -242 225 7 511 311 93 11 chr4 14605228 14605411 -187722936 + MIR SINE MIR 18 215 -47 427 241 32 97 chr4 14605470 14605686 -187722661 - MIR SINE MIR -54 208 7 203 156 0 0 chr4 14605811 14605843 -187722504 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 1113 199 102 89 chr4 14606389 14606780 -187721567 + MSTD LTR MaLR 1 396 0 262 296 93 9 chr4 14609441 14609549 -187718798 + L2 LINE L2 3197 3313 0 4948 31 2 3 chr4 14609564 14610151 -187718196 + L1PA5 LINE L1 5562 6147 -7 1658 180 64 0 chr4 14610587 14610977 -187717370 + MLT2B1 LTR ERVL 1 460 -55 2156 126 24 78 chr4 14611013 14611352 -187716995 + MER83 LTR ERV1 1 310 -138 1801 147 0 72 chr4 14611352 14611686 -187716661 - AluSx SINE Alu -2 310 1 2156 126 24 78 chr4 14611686 14611807 -187716540 + MER83 LTR ERV1 310 436 -12 1025 211 86 27 chr4 14614605 14615007 -187713340 - MLT2B1 LTR ERVL -13 401 1 400 305 100 25 chr4 14615159 14615359 -187712988 + MIR SINE MIR 6 220 -42 303 287 167 0 chr4 14615608 14615716 -187712631 - L2 LINE L2 0 3313 3188 247 196 0 22 chr4 14616297 14616343 -187712004 + L2 LINE L2 3224 3268 -4 21 57 0 0 chr4 14616631 14616666 -187711681 + AT_rich Low_complexity Low_complexity 1 35 0 830 260 28 28 chr4 14616744 14616994 -187711353 + MIR SINE MIR 13 262 0 430 208 50 10 chr4 14618132 14618233 -187710114 + MER45 DNA AcHobo 13 117 -61 405 380 98 17 chr4 14618620 14618967 -187709380 + L2 LINE L2 2860 3234 -38 236 291 51 63 chr4 14619833 14619991 -187708356 + MER5A DNA MER1_type 33 188 -1 184 358 84 11 chr4 14620666 14620761 -187707586 + MER5B DNA MER1_type 50 151 -27 517 267 70 113 chr4 14620812 14621209 -187707138 - L2 LINE L2 0 3313 2934 218 320 39 0 chr4 14621240 14621318 -187707029 - MIR SINE MIR -63 199 119 189 0 0 0 chr4 14621408 14621429 -187706918 + (TG)n Simple_repeat Simple_repeat 2 22 0 428 333 142 6 chr4 14622649 14622811 -187705536 - MER5A DNA MER1_type -2 187 4 287 299 10 41 chr4 14623111 14623208 -187705139 + MER91A DNA MER1_type 103 196 0 308 321 75 70 chr4 14623271 14623643 -187704704 + L2 LINE L2 2508 2915 -357 2078 137 0 16 chr4 14623643 14623958 -187704389 + AluSq SINE Alu 1 310 -3 308 321 75 70 chr4 14623958 14624195 -187704152 + L2 LINE L2 2915 3149 -123 219 36 0 0 chr4 14624321 14624349 -187703998 + (CAGAGA)n Simple_repeat Simple_repeat 1 28 0 467 270 143 25 chr4 14624486 14624682 -187703665 + MIR SINE MIR 31 249 -13 345 297 41 21 chr4 14625772 14625917 -187702430 - MIR SINE MIR -80 182 35 213 175 0 0 chr4 14626097 14626137 -187702210 + (TTCA)n Simple_repeat Simple_repeat 3 42 0 337 325 69 15 chr4 14626188 14626391 -187701956 + MIR SINE MIR 33 246 -16 325 374 24 0 chr4 14627351 14627474 -187700873 + MIR3 SINE MIR 57 182 -26 2363 60 0 0 chr4 14627587 14627908 -187700439 - AluY SINE Alu 0 322 2 308 188 25 12 chr4 14628090 14628170 -187700177 - L1MD3 LINE L1 -13 7982 7902 * 2188 262 73 33 chr4 14628169 14629151 -187699196 - L1MC4a LINE L1 -1305 6503 5482 2465 167 39 0 chr4 14629169 14629636 -187698711 - L1MC1 LINE L1 -7 6326 5842 3385 190 8 37 chr4 14629786 14630763 -187697584 - L1MC1 LINE L1 -468 5865 4905 462 266 19 0 chr4 14630747 14630901 -187697446 - L1MC4a LINE L1 -2309 5499 5343 * 499 293 71 30 chr4 14630903 14631340 -187697007 - L1MC4a LINE L1 -832 5314 4860 352 315 16 24 chr4 14631729 14631856 -187696491 + L2 LINE L2 3146 3271 -1 336 295 192 13 chr4 14632013 14632169 -187696178 - MIR SINE MIR -19 243 60 293 121 0 106 chr4 14632659 14632725 -187695622 + MLT1K LTR MaLR 530 588 0 266 344 123 22 chr4 14632969 14633286 -187695061 - L2 LINE L2 -416 2898 2550 182 384 141 0 chr4 14634324 14634423 -187693924 + MIR SINE MIR 36 148 -114 233 250 62 12 chr4 14634642 14634722 -187693625 - L2 LINE L2 -2 3270 3187 1072 233 42 10 chr4 14635256 14635569 -187692778 + MER33 DNA MER1_type 1 323 -1 1981 98 0 24 chr4 14636692 14637021 -187691326 - AluSq SINE Alu 0 354 33 1141 233 31 97 chr4 14637425 14637980 -187690367 + L1ME2 LINE L1 5656 6164 0 213 300 43 0 chr4 14639324 14639394 -187688953 + MIR3 SINE MIR 120 192 -16 265 188 24 0 chr4 14639546 14639631 -187688716 + (TA)n Simple_repeat Simple_repeat 1 87 0 421 337 61 41 chr4 14639638 14639884 -187688463 - MIR SINE MIR -1 261 11 2057 89 49 26 chr4 14639998 14640302 -187688045 + AluY SINE Alu 1 311 0 207 0 0 0 chr4 14640880 14640903 -187687444 + (TAAAA)n Simple_repeat Simple_repeat 3 25 0 324 336 25 0 chr4 14641177 14641299 -187687048 + MIR SINE MIR 81 205 -57 2234 185 30 38 chr4 14641362 14641869 -187686478 + MER74A LTR ERVL 1 503 -55 2308 80 0 7 chr4 14641869 14642168 -187686179 + AluSp SINE Alu 1 297 -16 229 169 42 56 chr4 14642190 14642261 -187686086 + MER74A LTR ERVL 489 558 0 851 175 0 0 chr4 14643173 14643316 -187685031 + MLT1C LTR MaLR 325 467 0 1714 206 82 5 chr4 14643936 14644304 -187684043 - MSTD LTR MaLR 0 396 1 1565 202 34 36 chr4 14644560 14644947 -187683400 - MLT1B LTR MaLR -4 386 1 822 210 17 23 chr4 14645308 14645484 -187682863 + MLT1J2 LTR MaLR 82 256 -194 1882 187 47 6 chr4 14645499 14645858 -187682489 + MLT1B LTR MaLR 17 390 0 307 287 189 37 chr4 14646488 14646652 -187681695 + MIR SINE MIR 66 254 -8 247 323 77 23 chr4 14646664 14646794 -187681553 - MIR SINE MIR -108 154 18 212 315 9 56 chr4 14647379 14647583 -187680764 + MIR3 SINE MIR 8 202 -6 2412 152 31 31 chr4 14647761 14648182 -187680165 + MSTB LTR MaLR 1 421 -5 276 351 42 54 chr4 14648407 14648720 -187679627 + L2 LINE L2 3004 3312 -1 1177 194 14 0 chr4 14648855 14649071 -187679276 - MER20 DNA MER1_type 0 219 1 21 0 0 0 chr4 14649192 14649213 -187679134 + AT_rich Low_complexity Low_complexity 1 21 0 573 288 64 69 chr4 14649249 14649715 -187678632 - LTR67 LTR ERVL -2 555 92 356 252 16 31 chr4 14650607 14650734 -187677613 - MLT1I LTR MaLR -8 401 277 294 294 28 46 chr4 14650771 14650880 -187677467 - L2 LINE L2 -183 3089 2983 726 319 85 50 chr4 14650960 14651887 -187676460 - L2 LINE L2 -465 2849 1890 330 293 17 35 chr4 14651912 14652028 -187676319 - L2 LINE L2 0 3313 3200 237 273 0 18 chr4 14652134 14652189 -187676158 + MLT1J1 LTR MaLR 283 336 -110 1356 107 53 31 chr4 14652190 14652316 -187676031 + MER30 DNA MER1_type 1 136 -94 2346 110 0 0 chr4 14652316 14652625 -187675722 - AluSx SINE Alu -3 309 1 1356 107 53 31 chr4 14652625 14652723 -187675624 + MER30 DNA MER1_type 136 230 0 1664 169 71 23 chr4 14652756 14653110 -187675237 - THE1C LTR MaLR 0 375 5 499 314 37 21 chr4 14653496 14653684 -187674663 + MIR SINE MIR 64 254 -8 242 329 122 18 chr4 14654077 14654241 -187674106 - MIR SINE MIR -16 246 66 317 317 99 6 chr4 14654388 14654549 -187673798 + MIR SINE MIR 36 211 -51 2457 123 17 6 chr4 14654706 14655064 -187673283 + THE1B LTR MaLR 1 362 -2 40 37 0 0 chr4 14655666 14655720 -187672627 + AT_rich Low_complexity Low_complexity 1 54 0 418 357 29 25 chr4 14656825 14657105 -187671242 + L1ME4a LINE L1 5623 5903 -218 21 36 0 0 chr4 14657577 14657605 -187670742 + AT_rich Low_complexity Low_complexity 1 28 0 183 129 0 0 chr4 14657992 14658023 -187670324 + (CA)n Simple_repeat Simple_repeat 2 32 0 3780 188 20 22 chr4 14658033 14658767 -187669580 - MER44D DNA MER2_type 0 605 1 362 285 106 34 chr4 14659249 14659635 -187668712 + L1MC5 LINE L1 4021 4434 -1712 708 242 77 0 chr4 14660345 14660539 -187667808 + L1MC5 LINE L1 5723 5931 -1877 32 91 0 0 chr4 14660712 14660800 -187667547 + AT_rich Low_complexity Low_complexity 1 88 0 1877 225 86 90 chr4 14661021 14662043 -187666304 + L1MC5 LINE L1 6503 7523 -438 795 107 0 0 chr4 14662043 14662155 -187666192 + L1PA10 LINE L1 6046 6157 -11 1877 225 86 90 chr4 14662155 14662224 -187666123 + L1MC5 LINE L1 7523 7591 -370 468 311 0 0 chr4 14662380 14662499 -187665848 + L2 LINE L2 3193 3311 -2 341 345 21 14 chr4 14662765 14662910 -187665437 + LTR16C LTR ERVL 181 326 -165 321 303 74 25 chr4 14663002 14663124 -187665223 - MIR SINE MIR -43 219 92 25 51 0 0 chr4 14664194 14664233 -187664114 + AT_rich Low_complexity Low_complexity 1 39 0 2318 103 17 28 chr4 14664967 14665325 -187663022 + THE1A LTR MaLR 2 355 0 282 246 172 8 chr4 14665808 14665925 -187662422 - L1ME2 LINE L1 -11 6153 6010 336 24 0 0 chr4 14665925 14665966 -187662381 + (TG)n Simple_repeat Simple_repeat 1 41 0 282 246 172 8 chr4 14665966 14665982 -187662365 - L1ME2 LINE L1 -154 6010 5998 1741 246 71 70 chr4 14666146 14666764 -187661583 + MLT1E2 LTR MaLR 6 626 0 21 0 0 0 chr4 14666964 14666985 -187661362 + AT_rich Low_complexity Low_complexity 1 21 0 623 308 49 0 chr4 14668082 14668329 -187660018 - MIR SINE MIR -2 260 2 462 345 103 5 chr4 14669351 14669574 -187658773 - MIR SINE MIR -2 260 16 1676 237 99 13 chr4 14669892 14670368 -187657979 - LTR40a LTR ERVL 0 519 3 200 200 0 0 chr4 14670450 14670490 -187657857 + (TGAA)n Simple_repeat Simple_repeat 4 43 0 309 287 43 9 chr4 14670544 14670659 -187657688 + MIR SINE MIR 71 189 -73 267 253 13 13 chr4 14670670 14670749 -187657598 + (TA)n Simple_repeat Simple_repeat 2 80 0 319 274 17 34 chr4 14670931 14671048 -187657299 + CT-rich Low_complexity Low_complexity 2 116 0 256 259 168 30 chr4 14672234 14672365 -187655982 + MIR SINE MIR 35 183 -79 3353 67 2 9 chr4 14672583 14673034 -187655313 - LTR7 LTR ERV1 -2 448 1 2386 96 34 16 chr4 14673034 14673419 -187654928 - HERVH LTR ERV1 0 7713 7322 1372 107 37 5 chr4 14673417 14673633 -187654714 - HERVH LTR ERV1 -1894 5819 5597 * 8707 99 2 6 chr4 14673630 14675355 -187652992 - HERVH LTR ERV1 -1818 5273 3492 * 16730 107 69 11 chr4 14675345 14678013 -187650334 - HERVH LTR ERV1 -4423 3290 467 1111 117 0 0 chr4 14678001 14678155 -187650192 - HERVH LTR ERV1 -7559 154 1 * 3414 67 0 7 chr4 14678157 14678608 -187649739 - LTR7 LTR ERV1 -2 448 1 495 335 57 10 chr4 14678791 14679000 -187649347 - MIR SINE MIR -11 251 33 804 217 37 28 chr4 14679462 14679679 -187648668 - MER20 DNA MER1_type 0 219 1 849 222 9 47 chr4 14680556 14680768 -187647579 + MER63A DNA MER1_type 7 210 0 214 356 115 0 chr4 14683479 14683566 -187644781 - MIR SINE MIR -82 126 30 291 316 59 64 chr4 14684411 14684470 -187643877 - MIR SINE MIR -31 231 173 2256 96 3 17 chr4 14684470 14684771 -187643576 + AluSc SINE Alu 1 297 -12 291 316 59 64 chr4 14684771 14684898 -187643449 - MIR SINE MIR -89 173 46 277 262 0 95 chr4 14685285 14685369 -187642978 - L2 LINE L2 -5 3308 3233 357 290 154 6 chr4 14685409 14685578 -187642769 + MIR SINE MIR 55 248 -14 989 256 87 73 chr4 14685826 14686298 -187642049 + MLT2B1 LTR ERVL 1 482 -38 411 38 0 0 chr4 14686298 14686351 -187641996 + (CA)n Simple_repeat Simple_repeat 2 54 0 989 256 87 73 chr4 14686351 14686385 -187641962 + MLT2B1 LTR ERVL 482 514 -6 270 294 261 6 chr4 14686664 14686844 -187641503 - MIR SINE MIR -16 246 21 246 261 0 43 chr4 14687229 14687298 -187641049 + CT-rich Low_complexity Low_complexity 2 67 0 301 238 0 0 chr4 14687843 14687906 -187640441 - L1MC4 LINE L1 -1339 6703 6641 1837 170 3 0 chr4 14687941 14688235 -187640112 - AluJb SINE Alu -17 295 1 546 329 18 22 chr4 14689673 14689895 -187638452 - LTR16A LTR ERVL -144 306 86 351 229 50 64 chr4 14689933 14690073 -187638274 - MIR SINE MIR -1 261 124 295 340 0 21 chr4 14690442 14690536 -187637811 - MIR SINE MIR -150 112 21 219 69 0 0 chr4 14691117 14691146 -187637201 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 396 317 24 16 chr4 14691821 14691944 -187636403 - MIR SINE MIR -68 140 17 199 43 22 87 chr4 14692187 14692233 -187636114 + (AATAG)n Simple_repeat Simple_repeat 2 44 0 335 323 56 87 chr4 14692454 14692832 -187635515 + MLT1I LTR MaLR 29 394 -15 5175 60 8 0 chr4 14692924 14693572 -187634775 - L1PA7 LINE L1 0 6154 5502 1676 184 0 27 chr4 14694050 14694240 -187634107 - AluJb SINE Alu 0 312 133 369 0 0 0 chr4 14694240 14694281 -187634066 + (TA)n Simple_repeat Simple_repeat 2 42 0 1676 184 0 27 chr4 14694281 14694411 -187633936 - AluJb SINE Alu -179 133 1 189 0 0 0 chr4 14695783 14695804 -187632543 + (A)n Simple_repeat Simple_repeat 1 21 0 365 0 22 0 chr4 14695944 14695989 -187632358 + (CA)n Simple_repeat Simple_repeat 1 46 0 35 0 0 0 chr4 14696024 14696059 -187632288 + AT_rich Low_complexity Low_complexity 1 35 0 225 139 0 0 chr4 14696703 14696746 -187631601 + (CA)n Simple_repeat Simple_repeat 2 44 0 333 282 61 70 chr4 14696821 14697034 -187631313 + L2 LINE L2 3093 3303 -10 184 30 61 0 chr4 14697237 14697270 -187631077 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 252 347 8 50 chr4 14697272 14697393 -187630954 - L2 LINE L2 -305 2967 2852 26 0 0 0 chr4 14698424 14698450 -187629897 + AT_rich Low_complexity Low_complexity 1 26 0 233 98 24 0 chr4 14698592 14698633 -187629714 + (GA)n Simple_repeat Simple_repeat 1 42 0 26 50 0 0 chr4 14698743 14698783 -187629564 + AT_rich Low_complexity Low_complexity 1 40 0 345 264 21 62 chr4 14698797 14698941 -187629406 - MIR SINE MIR -59 203 66 326 336 39 0 chr4 14699204 14699308 -187629039 - L2 LINE L2 -7 3265 3158 351 286 11 0 chr4 14699403 14699494 -187628853 - MER96 DNA MER1_type? -73 102 11 355 335 72 19 chr4 14699839 14700048 -187628299 - ERVL LTR ERVL -642 5122 4903 1002 243 60 76 chr4 14700450 14700692 -187627655 + MLT1A2 LTR MaLR 1 236 -138 2060 105 7 0 chr4 14700692 14700995 -187627352 + AluSg SINE Alu 6 310 0 1002 243 60 76 chr4 14700995 14701119 -187627228 + MLT1A2 LTR MaLR 236 361 -13 623 329 28 12 chr4 14701131 14701386 -187626961 - ERVL LTR ERVL -1282 4482 4224 265 342 19 13 chr4 14701925 14702080 -187626267 + ERVL LTR ERVL 1728 1883 -3881 312 293 57 53 chr4 14702825 14703108 -187625239 - L1M4 LINE L1 -1130 5016 4733 551 269 51 87 chr4 14703405 14703956 -187624391 + L1ME LINE L1 5291 5817 -345 1608 182 7 20 chr4 14704029 14704325 -187624022 + AluJb SINE Alu 1 292 -20 21 0 0 0 chr4 14704565 14704586 -187623761 + AT_rich Low_complexity Low_complexity 1 21 0 389 291 61 80 chr4 14704721 14704934 -187623413 + MIR SINE MIR 6 214 -48 208 336 174 20 chr4 14706143 14706292 -187622055 - MIR3 SINE MIR -27 181 10 2206 129 6 0 chr4 14706601 14706912 -187621435 - AluSp SINE Alu 0 313 1 314 306 108 69 chr4 14707121 14707353 -187620994 + L2 LINE L2 3027 3267 -5 255 274 113 32 chr4 14708465 14708589 -187619758 + L2 LINE L2 1998 2131 -1183 225 252 29 68 chr4 14708635 14708738 -187619609 + MLT1J2 LTR MaLR 42 140 -310 41427 45 2 1 chr4 14708912 14715057 -187613290 - L1PA3 LINE L1 -3 6152 4 1911 167 28 0 chr4 14715628 14715988 -187612359 - L1PA16 LINE L1 -220 5946 5577 2092 285 60 11 chr4 14716026 14716777 -187611570 - Zaphod DNA AcHobo -3238 793 6 321 140 0 0 chr4 14716993 14717050 -187611297 + (CA)n Simple_repeat Simple_repeat 2 58 0 985 259 119 23 chr4 14717508 14718165 -187610182 - L2 LINE L2 0 3313 2592 680 285 8 51 chr4 14718162 14718397 -187609950 - MIR SINE MIR 0 262 38 * 343 215 93 37 chr4 14718333 14718440 -187609907 - L2 LINE L2 -701 2613 2501 * 1980 130 58 3 chr4 14718518 14718811 -187609536 - AluSx SINE Alu -3 309 1 209 375 0 0 chr4 14718882 14718946 -187609401 - MIR SINE MIR -60 148 85 529 138 28 110 chr4 14719207 14719352 -187608995 + MLT1A2 LTR MaLR 1 133 -241 1597 159 69 45 chr4 14719354 14719688 -187608659 + MER61A LTR ERV1 2 343 0 186 103 0 0 chr4 14719715 14719744 -187608603 + (A)n Simple_repeat Simple_repeat 1 29 0 376 343 39 6 chr4 14720093 14720271 -187608076 + MIR SINE MIR 1 184 -78 687 292 5 10 chr4 14720394 14720603 -187607744 + MER20 DNA MER1_type 1 208 -11 929 185 0 0 chr4 14720603 14720774 -187607573 + AluSg/x SINE Alu 130 300 0 2316 121 49 0 chr4 14721449 14721796 -187606551 - THE1B LTR MaLR 0 364 1 310 336 46 0 chr4 14721849 14721980 -187606367 + L2 LINE L2 3132 3268 -4 364 344 23 0 chr4 14722233 14722364 -187605983 - L2 LINE L2 -5 3267 3134 230 219 44 131 chr4 14722427 14722587 -187605760 + MLT2F LTR ERVL 1 146 -517 355 270 76 49 chr4 14722591 14722776 -187605571 + MLT1E3 LTR MaLR 52 241 -383 239 184 20 0 chr4 14722846 14722895 -187605452 + MLT2F LTR ERVL 557 606 -57 262 315 9 28 chr4 14722895 14723003 -187605344 + (CATATA)n Simple_repeat Simple_repeat 4 109 0 395 274 109 23 chr4 14724822 14724997 -187603350 + MLT1J2 LTR MaLR 6 195 -255 201 151 19 38 chr4 14725245 14725298 -187603049 + T-rich Low_complexity Low_complexity 1 52 0 300 343 55 0 chr4 14725950 14726096 -187602251 + MIR SINE MIR 81 234 -28 21 0 0 0 chr4 14726161 14726182 -187602165 + AT_rich Low_complexity Low_complexity 1 21 0 345 270 101 46 chr4 14726189 14726210 -187602137 - MIR SINE MIR -62 146 128 918 219 5 5 chr4 14726210 14726415 -187601932 + MER3 DNA MER1_type 5 209 0 345 270 101 46 chr4 14726415 14726571 -187601776 - MIR SINE MIR -80 128 5 181 309 52 62 chr4 14726659 14726756 -187601591 - L3b LINE CR1 -10 1573 1478 548 344 118 55 chr4 14727396 14728279 -187600068 + L2 LINE L2 1255 2278 -1036 2357 87 3 10 chr4 14728279 14728588 -187599759 - AluY SINE Alu -4 307 1 548 344 118 55 chr4 14728588 14729237 -187599110 + L2 LINE L2 2278 2884 -430 3568 114 6 0 chr4 14729729 14730212 -187598135 - HSMAR1 DNA Mariner 0 1287 802 705 167 9 0 chr4 14730211 14730325 -187598022 + HSMAR1 DNA Mariner 562 676 -611 * 366 169 14 0 chr4 14730330 14730401 -187597946 - HSMAR1 DNA Mariner -1215 72 1 730 137 17 0 chr4 14730500 14730617 -187597730 - AluSp/q SINE Alu -21 292 174 5035 117 52 7 chr4 14730624 14731388 -187596959 - HSMAR1 DNA Mariner -488 799 1 1916 120 13 43 chr4 14731477 14731778 -187596569 - AluSq SINE Alu -21 292 1 1484 204 23 29 chr4 14732151 14732494 -187595853 + MLT1A1 LTR MaLR 25 365 0 434 327 60 20 chr4 14732661 14732912 -187595435 + MIR SINE MIR 2 262 0 754 282 77 55 chr4 14733885 14734264 -187594083 + L2 LINE L2 2925 3311 -2 186 409 63 7 chr4 14734247 14734389 -187593958 + L2 LINE L2 3162 3311 -2 * 193 194 0 0 chr4 14734539 14734575 -187593772 + MIR SINE MIR 217 252 -10 195 282 146 19 chr4 14735889 14735992 -187592355 - MIR SINE MIR -10 252 137 200 385 0 0 chr4 14736330 14736395 -187591952 + MIR3 SINE MIR 129 193 -15 680 268 39 36 chr4 14737074 14737382 -187590965 + MER74B LTR ERVL 179 588 -34 364 238 49 98 chr4 14737514 14737657 -187590690 + MIR SINE MIR 108 243 -19 258 284 0 0 chr4 14737702 14737776 -187590571 + (TA)n Simple_repeat Simple_repeat 2 75 0 253 253 25 51 chr4 14737829 14737908 -187590439 - MIR SINE MIR -96 166 90 276 320 7 52 chr4 14738734 14738887 -187589460 - MIR SINE MIR -82 180 35 230 293 8 65 chr4 14740265 14740388 -187587959 - MIR SINE MIR -77 185 70 1261 264 53 28 chr4 14742412 14742847 -187585500 - L1MCb LINE L1 -5596 449 4 1715 276 58 37 chr4 14742867 14743750 -187584597 - L1MCa LINE L1 -4760 1804 904 33 0 0 0 chr4 14743753 14743786 -187584561 + AT_rich Low_complexity Low_complexity 1 33 0 1524 167 28 31 chr4 14743797 14744084 -187584263 - AluJo SINE Alu -26 286 1 401 252 0 18 chr4 14744085 14744196 -187584151 - L1MCa LINE L1 -5145 901 793 325 128 35 58 chr4 14744365 14744451 -187583896 - L1MA4 LINE L1 -1 6299 6216 271 271 0 14 chr4 14744484 14744554 -187583793 - L1MCa LINE L1 -5537 509 441 289 310 79 50 chr4 14744808 14745111 -187583236 - L1MCa LINE L1 -5698 347 36 1745 160 99 0 chr4 14747083 14747396 -187580951 - MER7A DNA MER2_type -4 342 1 667 306 79 70 chr4 14747470 14748100 -187580247 - L2 LINE L2 -859 2455 1820 492 309 24 52 chr4 14748571 14748823 -187579524 + MIR SINE MIR 13 257 -5 443 221 39 0 chr4 14749184 14749288 -187579059 + Tigger5 DNA MER2_type 2216 2323 0 264 324 28 0 chr4 14749383 14749454 -187578893 - MIR3 SINE MIR -43 165 93 526 292 62 11 chr4 14749592 14749770 -187578577 - MIR3 SINE MIR -6 202 16 851 267 157 12 chr4 14750739 14751140 -187577207 - L1MC4a LINE L1 -1914 5894 5436 939 232 23 5 chr4 14751270 14751490 -187576857 - L1ME LINE L1 -431 5731 5508 238 355 55 9 chr4 14751490 14751600 -187576747 - L2 LINE L2 -275 3038 2924 320 256 78 39 chr4 14751788 14751968 -187576379 - L1MC/D LINE L1 -2040 5768 5582 1162 141 0 0 chr4 14752238 14752437 -187575910 + L1MA6 LINE L1 6102 6300 0 236 270 33 149 chr4 14752690 14752931 -187575416 - MIR SINE MIR -1 261 49 380 262 31 109 chr4 14753250 14753479 -187574868 + MLT1I LTR MaLR 191 401 -8 252 247 224 0 chr4 14753487 14753572 -187574775 + MIR SINE MIR 159 262 0 2414 126 22 0 chr4 14754391 14754747 -187573600 - THE1B LTR MaLR 0 364 1 540 78 13 0 chr4 14754938 14755015 -187573332 - L1PA16 LINE L1 -10 6156 6079 5345 209 22 27 chr4 14755022 14756379 -187571968 - L1 LINE L1 -1087 5059 3710 2975 219 4 11 chr4 14756381 14757143 -187571204 + L1 LINE L1 2946 3702 -2444 211 373 10 47 chr4 14757151 14757344 -187571003 - L2 LINE L2 -17 3296 3111 449 332 76 26 chr4 14757810 14758193 -187570154 + L1ME4a LINE L1 5711 6112 -9 237 299 95 36 chr4 14758235 14758456 -187569891 + L1MC/D LINE L1 5319 5552 -2256 21 0 0 0 chr4 14758661 14758682 -187569665 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr4 14760064 14760094 -187568253 + AT_rich Low_complexity Low_complexity 1 30 0 462 314 34 0 chr4 14761512 14761687 -187566660 + MIR SINE MIR 68 248 -14 241 398 11 0 chr4 14762538 14762631 -187565716 + MIR3 SINE MIR 3 96 -112 245 332 106 70 chr4 14763426 14763824 -187564523 - L2 LINE L2 -56 3216 2805 191 381 95 0 chr4 14763888 14763993 -187564354 - L2 LINE L2 -993 2321 2207 1658 146 16 12 chr4 14764001 14764255 -187564092 + AluSx SINE Alu 43 297 -15 388 258 13 44 chr4 14764494 14764643 -187563704 - L2 LINE L2 -1349 1965 1820 2186 127 3 3 chr4 14764643 14764951 -187563396 + AluSg SINE Alu 1 308 -2 32 26 0 0 chr4 14765005 14765044 -187563303 + AT_rich Low_complexity Low_complexity 1 39 0 1708 146 9 54 chr4 14765409 14765724 -187562623 + AluSx SINE Alu 1 301 -11 2385 100 0 0 chr4 14766115 14766425 -187561922 + AluSg SINE Alu 1 310 0 426 326 81 46 chr4 14766871 14767353 -187560994 + L1MC4a LINE L1 5427 5925 -1883 332 264 26 39 chr4 14767562 14767717 -187560630 + T-rich Low_complexity Low_complexity 1 153 0 1962 218 77 9 chr4 14768355 14768795 -187559552 + MLT2B1 LTR ERVL 1 470 -50 243 203 0 0 chr4 14768808 14768867 -187559480 + (TG)n Simple_repeat Simple_repeat 2 60 0 1943 124 43 35 chr4 14769088 14769460 -187558887 - THE1C LTR MaLR 0 375 1 379 341 12 38 chr4 14770352 14770542 -187557805 + MIR3 SINE MIR 1 186 -22 216 0 0 0 chr4 14770573 14770597 -187557750 + (TG)n Simple_repeat Simple_repeat 1 24 0 282 230 44 0 chr4 14770598 14770711 -187557636 + (TA)n Simple_repeat Simple_repeat 2 119 0 245 307 47 68 chr4 14770979 14771171 -187557176 - L2 LINE L2 -76 3237 3050 1251 281 96 16 chr4 14771187 14771624 -187556723 + L1M3d LINE L1 2 473 -5418 2643 196 33 113 chr4 14771635 14773112 -187555235 + L1MA8 LINE L1 4795 6172 -119 257 329 20 59 chr4 14773113 14773265 -187555082 - L2 LINE L2 -270 3043 2898 189 0 0 0 chr4 14773267 14773288 -187555059 + (A)n Simple_repeat Simple_repeat 1 21 0 555 263 65 129 chr4 14773338 14773402 -187554945 - L2 LINE L2 -420 2894 2827 2491 71 0 0 chr4 14773402 14773698 -187554649 - AluY SINE Alu -15 296 1 555 263 65 129 chr4 14773698 14773841 -187554506 - L2 LINE L2 -487 2827 2676 2158 120 0 0 chr4 14773841 14774140 -187554207 - AluSg SINE Alu -11 299 1 555 263 65 129 chr4 14774140 14774472 -187553875 - L2 LINE L2 -638 2676 2389 283 232 0 49 chr4 14774555 14774637 -187553710 - MIR SINE MIR -108 154 77 330 315 101 0 chr4 14775814 14775963 -187552384 + MIR SINE MIR 22 185 -77 707 100 0 0 chr4 14776059 14776159 -187552188 - AluSc SINE Alu -17 292 193 229 275 198 0 chr4 14776776 14776867 -187551480 + MIR SINE MIR 23 131 -131 318 109 0 0 chr4 14776867 14776913 -187551434 + LTR16B LTR ERVL 1 46 -418 701 311 34 8 chr4 14776917 14777184 -187551163 + LTR16B LTR ERVL 188 461 -3 332 311 37 30 chr4 14777187 14777322 -187551025 + MIR SINE MIR 127 262 0 225 0 0 0 chr4 14777437 14777462 -187550885 + (A)n Simple_repeat Simple_repeat 1 25 0 187 318 70 39 chr4 14777634 14777763 -187550584 + L2 LINE L2 3169 3301 -12 945 300 60 70 chr4 14778354 14778934 -187549413 - L2 LINE L2 -1 3312 2731 448 349 37 4 chr4 14779009 14779250 -187549097 + ERVL LTR ERVL 4776 5024 -740 1059 297 63 14 chr4 14779692 14780059 -187548288 + LTR16A LTR ERVL 54 438 -12 205 275 0 0 chr4 14780887 14780927 -187547420 + MIR SINE MIR 200 239 -23 1771 264 53 49 chr4 14780982 14781741 -187546606 + LTR41 LTR ERVL 2 763 -10 657 258 50 11 chr4 14782205 14782387 -187545960 + MER5A DNA MER1_type 1 189 0 235 322 34 34 chr4 14782387 14782488 -187545859 - MIR SINE MIR -106 156 56 233 337 81 35 chr4 14782668 14782840 -187545507 + L3 LINE CR1 1397 1576 -1 315 200 263 0 chr4 14783585 14783665 -187544682 + MER58A DNA MER1_type 2 102 -5 1927 240 48 112 chr4 14783686 14784356 -187543991 - L1MEc LINE L1 -5203 1193 633 378 0 0 0 chr4 14784356 14784398 -187543949 + (TTA)n Simple_repeat Simple_repeat 1 42 0 1927 240 48 112 chr4 14784398 14784933 -187543414 - L1MEc LINE L1 -5763 633 65 181 361 16 0 chr4 14785809 14785870 -187542477 + L3 LINE CR1 1414 1475 -102 183 80 0 0 chr4 14786847 14786872 -187541475 + (T)n Simple_repeat Simple_repeat 1 25 0 300 111 0 0 chr4 14787120 14787165 -187541182 + (TA)n Simple_repeat Simple_repeat 2 46 0 25 0 0 0 chr4 14787257 14787282 -187541065 + AT_rich Low_complexity Low_complexity 1 25 0 316 228 26 61 chr4 14787395 14787509 -187540838 - MIR SINE MIR -86 176 67 6257 94 8 2 chr4 14787528 14788460 -187539887 + L1PB1 LINE L1 5215 6151 0 1515 234 40 6 chr4 14788492 14788916 -187539431 - MLT1D LTR MaLR -25 480 1 340 273 61 0 chr4 14789000 14789132 -187539215 + L1ME LINE L1 5573 5712 -409 637 289 248 15 chr4 14789231 14789626 -187538721 + L2 LINE L2 2827 3313 0 201 108 0 0 chr4 14789719 14789756 -187538591 + (TA)n Simple_repeat Simple_repeat 1 37 0 675 272 114 48 chr4 14790061 14790542 -187537805 - LTR33A LTR ERVL 0 523 11 509 30 15 0 chr4 14790912 14790979 -187537368 + (TCTA)n Simple_repeat Simple_repeat 1 68 0 372 97 0 0 chr4 14790990 14791052 -187537295 + (CA)n Simple_repeat Simple_repeat 2 63 0 217 295 184 22 chr4 14791885 14792163 -187536184 + L2 LINE L2 2424 2746 -568 1343 125 5 0 chr4 14792174 14792382 -187535965 - L1PA13 LINE L1 -18 6145 5937 1474 215 24 40 chr4 14793354 14793730 -187534617 + MLT1A2 LTR MaLR 4 373 -1 185 327 0 0 chr4 14794172 14794224 -187534123 - MIR SINE MIR -125 137 86 476 110 70 70 chr4 14794394 14794494 -187533853 + AluSg SINE Alu 38 137 -173 2121 112 3 25 chr4 14794495 14794809 -187533538 + AluSx SINE Alu 2 308 -4 1520 248 33 35 chr4 14794819 14795359 -187532988 + L1ME2 LINE L1 5617 6155 -9 329 335 71 17 chr4 14797261 14797500 -187530847 + L1M4 LINE L1 3547 3798 -2348 22 70 0 0 chr4 14797535 14797578 -187530769 + AT_rich Low_complexity Low_complexity 1 43 0 5246 148 23 25 chr4 14797693 14799263 -187529084 - L1PB1 LINE L1 -8 6143 4587 25 0 0 0 chr4 14799544 14799569 -187528778 + AT_rich Low_complexity Low_complexity 1 25 0 598 320 98 51 chr4 14799634 14799786 -187528561 + L1M4 LINE L1 4233 4376 -1770 2914 13 0 0 chr4 14799786 14800104 -187528243 + AluYb8 SINE Alu 1 318 0 598 320 98 51 chr4 14800104 14800748 -187527599 + L1M4 LINE L1 4376 5066 -1080 4783 167 27 15 chr4 14801214 14802081 -187526266 + L1PA16 LINE L1 5083 5961 -205 1758 200 0 3 chr4 14802081 14802376 -187525971 + AluJb SINE Alu 1 294 -18 4783 167 27 15 chr4 14802376 14802580 -187525767 + L1PA16 LINE L1 5961 6161 -5 791 245 5 11 chr4 14803093 14803277 -187525070 - MIR SINE MIR -27 235 53 279 293 24 12 chr4 14804297 14804379 -187523968 - MIR3 SINE MIR -11 197 115 311 329 74 13 chr4 14804554 14804703 -187523644 + MIR SINE MIR 29 186 -76 350 299 109 38 chr4 14804714 14804898 -187523449 - MIR SINE MIR 0 262 66 327 146 0 0 chr4 14804924 14804979 -187523368 + (TG)n Simple_repeat Simple_repeat 1 55 0 205 152 0 0 chr4 14804980 14805013 -187523334 + GA-rich Low_complexity Low_complexity 1 33 0 207 200 182 0 chr4 14805492 14805547 -187522800 - MIR3 SINE MIR -10 198 134 830 235 24 0 chr4 14805783 14805953 -187522394 + MER58A DNA MER1_type 1 174 -50 401 264 26 90 chr4 14806044 14806199 -187522148 - MER5B DNA MER1_type -8 170 26 184 401 86 20 chr4 14806230 14806427 -187521920 - L2 LINE L2 -225 3047 2838 3015 74 23 9 chr4 14808251 14808681 -187519666 - MLT2A1 LTR ERVL -8 436 1 998 260 32 4 chr4 14809150 14809396 -187518951 - MIR SINE MIR -5 257 5 180 212 0 35 chr4 14810101 14810186 -187518161 + (CATATA)n Simple_repeat Simple_repeat 5 86 0 22 56 0 0 chr4 14810243 14810279 -187518068 + AT_rich Low_complexity Low_complexity 1 36 0 341 145 13 0 chr4 14811477 14811553 -187516794 + GA-rich Low_complexity Low_complexity 2 78 0 243 288 258 8 chr4 14811705 14811837 -187516510 + MIR SINE MIR 72 236 -26 200 361 93 0 chr4 14812309 14812417 -187515930 - L2 LINE L2 -1 3312 3195 1407 149 93 17 chr4 14812612 14812914 -187515433 + THE1C LTR MaLR 51 375 0 243 278 107 47 chr4 14813106 14813275 -187515072 + L2 LINE L2 3095 3273 -40 246 228 0 0 chr4 14813364 14813421 -187514926 - MIR SINE MIR -112 150 94 25 0 0 0 chr4 14815722 14815747 -187512600 + AT_rich Low_complexity Low_complexity 1 25 0 348 263 48 11 chr4 14816286 14816389 -187511958 - MIR SINE MIR -63 145 49 1188 259 37 43 chr4 14818154 14818477 -187509870 - MLT1A2 LTR MaLR -1 373 51 3526 138 47 0 chr4 14818477 14819050 -187509297 - MER4A LTR ERV1 0 600 1 1188 259 37 43 chr4 14819050 14819101 -187509246 - MLT1A2 LTR MaLR -323 51 1 22 0 0 0 chr4 14819363 14819385 -187508962 + AT_rich Low_complexity Low_complexity 1 22 0 192 125 0 0 chr4 14820039 14820071 -187508276 + (T)n Simple_repeat Simple_repeat 1 32 0 1979 158 0 0 chr4 14820579 14820876 -187507471 - AluSq SINE Alu -16 297 1 1597 195 7 82 chr4 14821913 14822354 -187505993 + MLT2D LTR ERVL 1 408 -6 636 247 38 71 chr4 14822475 14822613 -187505734 + MIR SINE MIR 20 148 -114 2186 176 51 10 chr4 14822613 14823022 -187505325 - MSTB LTR MaLR 0 426 1 636 247 38 71 chr4 14823022 14823122 -187505225 + MIR SINE MIR 148 250 -12 229 329 13 0 chr4 14823167 14823243 -187505104 - MIR SINE MIR -12 250 174 185 286 18 36 chr4 14823384 14823440 -187504907 + MIR SINE MIR 197 251 -11 24 32 0 0 chr4 14823624 14823655 -187504692 + AT_rich Low_complexity Low_complexity 1 31 0 1118 263 59 18 chr4 14824004 14824478 -187503869 + MLT1G LTR MaLR 34 552 -3 959 182 82 106 chr4 14824717 14825096 -187503251 + MLT1A2 LTR MaLR 1 370 -4 530 287 109 4 chr4 14825422 14825652 -187502695 + MER46C DNA MER2_type 81 334 -4 4379 118 49 26 chr4 14825731 14827067 -187501280 + pTR5 LTR ERV1 743 2438 0 498 251 37 31 chr4 14828814 14828977 -187499370 + MIR SINE MIR 46 209 -53 291 196 112 49 chr4 14829808 14829951 -187498396 - Charlie7 DNA MER1_type -46 2566 2415 2449 63 0 25 chr4 14830003 14830322 -187498025 - AluY SINE Alu 0 311 1 395 320 34 34 chr4 14830567 14830889 -187497458 - Charlie7 DNA MER1_type -1982 630 309 198 91 0 0 chr4 14830951 14830984 -187497363 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 232 294 65 0 chr4 14831015 14831107 -187497240 + MLT1J LTR MaLR 95 192 -319 2251 109 0 16 chr4 14831398 14831710 -187496637 + AluSc SINE Alu 1 307 -2 636 241 52 68 chr4 14832063 14832254 -187496093 + MER5A DNA MER1_type 1 188 -1 303 213 25 0 chr4 14832747 14832827 -187495520 + MER103 DNA DNA 55 136 -30 219 313 104 0 chr4 14833586 14833720 -187494627 - L2 LINE L2 -316 2956 2809 422 378 15 10 chr4 14833860 14834061 -187494286 + MIR SINE MIR 17 218 -44 1883 261 45 37 chr4 14834187 14834808 -187493539 - MLT1E2 LTR MaLR 0 626 1 3794 152 41 46 chr4 14835354 14836136 -187492211 - LTR1 LTR ERV1 0 785 8 476 282 35 7 chr4 14836854 14836996 -187491351 + MIR SINE MIR 86 231 -31 1032 214 54 80 chr4 14837478 14837904 -187490443 - MER96B DNA MER1_type -1 416 2 341 393 41 7 chr4 14838799 14839089 -187489258 - L2 LINE L2 0 3313 3014 1910 224 37 6 chr4 14839304 14839791 -187488556 - L1MA9 LINE L1 -378 5934 5433 603 185 62 23 chr4 14839769 14839879 -187488468 + L1MA9 LINE L1 5908 6012 -279 * 1597 147 135 18 chr4 14839879 14840213 -187488134 + THE1C LTR MaLR 2 374 -1 603 185 62 23 chr4 14840213 14840380 -187487967 + L1MA9 LINE L1 6012 6284 -7 413 286 58 23 chr4 14841198 14841369 -187486978 - L3 LINE CR1 -214 1363 1187 199 376 12 0 chr4 14841806 14841891 -187486456 + L3 LINE CR1 1054 1139 -438 273 329 0 0 chr4 14841914 14841996 -187486351 + L2 LINE L2 3208 3289 -24 251 330 68 0 chr4 14842064 14842152 -187486195 + L3 LINE CR1 1207 1300 -277 200 210 48 0 chr4 14842217 14842279 -187486068 + (TA)n Simple_repeat Simple_repeat 1 65 0 374 257 34 136 chr4 14842517 14842567 -187485780 + L2 LINE L2 2981 3034 -238 1636 174 24 17 chr4 14842567 14842854 -187485493 + AluJo SINE Alu 6 294 -18 374 257 34 136 chr4 14842854 14843009 -187485338 + L2 LINE L2 3034 3165 -107 347 232 16 80 chr4 14843189 14843314 -187485033 - MLT1H1 LTR MaLR -375 180 64 983 213 36 23 chr4 14843578 14843799 -187484548 - MER58A DNA MER1_type 0 224 1 23 33 0 0 chr4 14844585 14844615 -187483732 + AT_rich Low_complexity Low_complexity 1 30 0 278 98 20 0 chr4 14844877 14844928 -187483419 + (TA)n Simple_repeat Simple_repeat 2 53 0 311 109 0 0 chr4 14844935 14844981 -187483366 - MLT2A2 LTR ERVL -8 445 400 231 36 0 0 chr4 14844988 14845016 -187483331 + (TG)n Simple_repeat Simple_repeat 2 29 0 250 274 12 24 chr4 14845019 14845103 -187483244 + (CATATA)n Simple_repeat Simple_repeat 4 86 0 2805 88 28 2 chr4 14845105 14845501 -187482846 - MLT2A2 LTR ERVL -47 406 1 34 42 0 0 chr4 14845766 14845814 -187482533 + AT_rich Low_complexity Low_complexity 1 48 0 403 322 9 0 chr4 14845899 14846014 -187482333 + L2 LINE L2 3197 3312 -1 579 133 25 50 chr4 14846089 14846194 -187482153 - MLT1H LTR MaLR 0 549 446 1414 203 35 46 chr4 14846194 14846563 -187481784 + MLT1A1 LTR MaLR 1 365 0 579 133 25 50 chr4 14846563 14846577 -187481770 - MLT1H LTR MaLR -103 446 433 423 332 66 26 chr4 14847846 14848072 -187480275 - MIR SINE MIR -20 242 8 1861 161 0 7 chr4 14848121 14848413 -187479934 + AluSx SINE Alu 1 290 -22 366 226 0 89 chr4 14848562 14848686 -187479661 - MLT1I LTR MaLR -2 407 295 1742 162 6 61 chr4 14849021 14849380 -187478967 + MER44D DNA MER2_type 1 609 0 250 335 84 47 chr4 14849841 14850032 -187478315 - MLT1K LTR MaLR -109 479 282 225 352 56 28 chr4 14850800 14850942 -187477405 + MIR SINE MIR 6 151 -111 313 271 24 12 chr4 14851840 14851925 -187476422 - L2 LINE L2 -1 3271 3186 217 320 11 34 chr4 14851968 14852146 -187476201 + GA-rich Low_complexity Low_complexity 5 178 0 1034 248 58 60 chr4 14852550 14852950 -187475397 + MLT1D LTR MaLR 1 399 -106 1808 178 56 16 chr4 14853259 14853635 -187474712 - MSTD LTR MaLR 0 396 6 436 252 50 0 chr4 14856525 14856644 -187471703 - MER63A DNA MER1_type -33 177 53 444 208 0 0 chr4 14856645 14856741 -187471606 + (TA)n Simple_repeat Simple_repeat 2 97 0 229 152 0 0 chr4 14856743 14856789 -187471558 + LTR66 LTR ERVL 394 439 -171 1200 111 0 0 chr4 14856808 14856988 -187471359 + (TA)n Simple_repeat Simple_repeat 1 180 0 225 286 57 0 chr4 14857052 14857122 -187471225 + L2 LINE L2 3196 3269 -3 588 304 40 24 chr4 14858126 14858373 -187469974 + MIR SINE MIR 9 259 -3 849 308 80 28 chr4 14859010 14859669 -187468678 + L2 LINE L2 2579 3293 -20 576 301 41 18 chr4 14859693 14859912 -187468435 - MIR SINE MIR -4 258 35 217 322 0 0 chr4 14860130 14860189 -187468158 + L2 LINE L2 3139 3197 -75 787 277 75 46 chr4 14860214 14860561 -187467786 - L2 LINE L2 -16 3297 2941 220 409 70 9 chr4 14861290 14861405 -187466942 - L2 LINE L2 -429 2885 2764 6956 29 3 0 chr4 14864883 14865745 -187462602 - L1PA4 LINE L1 -1 6154 5290 25 0 0 0 chr4 14866873 14866898 -187461449 + AT_rich Low_complexity Low_complexity 1 25 0 487 372 41 4 chr4 14867021 14867263 -187461084 - MIR SINE MIR 0 262 12 288 312 26 19 chr4 14867452 14867601 -187460746 - MIR3 SINE MIR -68 140 8 232 342 112 0 chr4 14868800 14868961 -187459386 - MIR SINE MIR -1 261 83 390 21 0 0 chr4 14869079 14869126 -187459221 + (CA)n Simple_repeat Simple_repeat 1 47 0 260 284 95 52 chr4 14869133 14869249 -187459098 - MIR3 SINE MIR -51 157 37 237 275 67 67 chr4 14869424 14869602 -187458745 + MIR SINE MIR 35 212 -50 422 198 0 0 chr4 14870093 14870184 -187458163 + MLT2B1 LTR ERVL 1 91 -463 3177 128 6 34 chr4 14870184 14870720 -187457627 - MER4D LTR ERV1 0 872 352 1785 132 124 47 chr4 14870720 14871106 -187457241 - MSTA LTR MaLR 0 428 13 1927 131 38 0 chr4 14871112 14871455 -187456892 - MER4D LTR ERV1 -516 356 1 1052 232 88 47 chr4 14871458 14871798 -187456549 + MLT2B1 LTR ERVL 91 444 -76 244 338 181 6 chr4 14871862 14872022 -187456325 - L2 LINE L2 -9 3263 3076 200 342 68 26 chr4 14872641 14872758 -187455589 - L2 LINE L2 -9 3304 3183 252 374 61 6 chr4 14872831 14872994 -187455353 + MIR SINE MIR 13 184 -78 274 167 33 17 chr4 14873183 14873243 -187455104 + MIR SINE MIR 97 157 -105 3518 67 13 0 chr4 14873516 14873977 -187454370 + L1PA13 LINE L1 5697 6163 0 341 43 21 0 chr4 14874511 14874558 -187453789 + (CA)n Simple_repeat Simple_repeat 1 48 0 307 203 29 0 chr4 14875889 14875958 -187452389 - MIR SINE MIR -12 250 180 363 244 13 0 chr4 14875960 14876038 -187452309 + MIR SINE MIR 164 242 -20 2060 165 31 11 chr4 14876089 14876471 -187451876 - MLT1B LTR MaLR 0 390 1 2139 133 0 9 chr4 14876609 14876924 -187451423 + AluSx SINE Alu 1 312 0 22 0 0 0 chr4 14877746 14877768 -187450579 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr4 14878405 14878430 -187449917 + AT_rich Low_complexity Low_complexity 1 25 0 324 330 25 0 chr4 14878730 14878848 -187449499 + L2 LINE L2 3193 3313 0 372 43 0 0 chr4 14878979 14879025 -187449322 + (CA)n Simple_repeat Simple_repeat 1 46 0 2149 91 10 3 chr4 14879250 14879547 -187448800 + AluSq SINE Alu 1 299 -14 2208 129 7 0 chr4 14879732 14880041 -187448306 + AluSx SINE Alu 1 311 -1 2298 69 0 3 chr4 14880217 14880521 -187447826 + L1PA8 LINE L1 5863 6165 -7 21 36 0 0 chr4 14881236 14881264 -187447083 + AT_rich Low_complexity Low_complexity 1 28 0 521 274 82 37 chr4 14881264 14881805 -187446542 - L1ME4a LINE L1 -11 6110 5516 356 331 23 12 chr4 14882988 14883146 -187445201 + MIR SINE MIR 32 196 -12 225 274 0 57 chr4 14883515 14883621 -187444726 - MIR SINE MIR -46 216 117 188 336 110 34 chr4 14883654 14883800 -187444547 - L2 LINE L2 -33 3239 3083 830 279 68 4 chr4 14884141 14884378 -187443969 + MIR SINE MIR 4 255 -7 353 180 0 0 chr4 14885231 14885292 -187443055 - AluSc SINE Alu -11 288 228 221 248 46 17 chr4 14885292 14885371 -187442976 - MIR SINE MIR -99 109 20 259 294 0 87 chr4 14885382 14885474 -187442873 + L2 LINE L2 3228 3311 -2 2410 98 0 0 chr4 14885987 14886292 -187442055 - AluSc SINE Alu -4 305 1 936 236 123 36 chr4 14887408 14887742 -187440605 + MLT1A1 LTR MaLR 1 363 -2 40875 45 10 2 chr4 14887800 14893908 -187434439 - L1PA4 LINE L1 0 6155 7 201 350 0 12 chr4 14894356 14894436 -187433911 + MIR SINE MIR 109 187 -75 256 380 83 32 chr4 14895213 14895526 -187432821 + L2 LINE L2 2934 3262 -10 396 205 12 12 chr4 14896009 14896092 -187432255 + MIR3 SINE MIR 72 154 -54 238 264 0 0 chr4 14896397 14896450 -187431897 + (CA)n Simple_repeat Simple_repeat 2 54 0 319 322 160 21 chr4 14896954 14897286 -187431061 - L2 LINE L2 -342 2972 2595 357 350 25 12 chr4 14898105 14898268 -187430079 + L1ME LINE L1 5609 5773 -348 380 298 121 42 chr4 14899479 14899694 -187428653 - MIR SINE MIR -11 251 20 3697 76 2 0 chr4 14899770 14900255 -187428092 + L1PA8 LINE L1 5677 6162 -10 569 284 127 22 chr4 14900553 14900821 -187427526 + L2 LINE L2 2512 2807 -507 707 253 11 11 chr4 14900824 14901002 -187427345 - MER58A DNA MER1_type 0 224 47 982 296 80 33 chr4 14901030 14901483 -187426864 + L2 LINE L2 2832 3305 -8 690 192 35 17 chr4 14901738 14901910 -187426437 + MLT1H LTR MaLR 14 188 -361 690 315 62 10 chr4 14901907 14902215 -187426132 + MLT1H LTR MaLR 226 549 0 1640 223 0 3 chr4 14902595 14902882 -187425465 + AluJo SINE Alu 1 286 -26 222 37 0 0 chr4 14902897 14902924 -187425423 + (TAA)n Simple_repeat Simple_repeat 1 27 0 1779 136 0 78 chr4 14903436 14903767 -187424580 + AluY SINE Alu 1 305 -6 436 273 93 29 chr4 14904553 14904725 -187423622 + MIR SINE MIR 18 200 -62 243 0 0 0 chr4 14905323 14905350 -187422997 + (T)n Simple_repeat Simple_repeat 1 27 0 327 263 0 0 chr4 14905790 14905866 -187422481 + MIR SINE MIR 79 154 -108 182 314 92 60 chr4 14906629 14906814 -187421533 - L2 LINE L2 -511 2803 2613 322 344 97 36 chr4 14906904 14907460 -187420887 - L2 LINE L2 -834 2480 1891 205 188 47 31 chr4 14908503 14908567 -187419780 + A-rich Low_complexity Low_complexity 2 66 0 314 307 71 61 chr4 14908679 14908790 -187419557 + HAL1b LINE L1 220 335 -1013 1889 168 84 25 chr4 14908790 14909194 -187419153 + MSTA LTR MaLR 1 428 0 314 307 71 61 chr4 14909194 14909294 -187419053 + HAL1b LINE L1 335 433 -915 2089 143 0 0 chr4 14909835 14910136 -187418211 + AluSx SINE Alu 1 301 -11 1698 128 49 85 chr4 14910759 14911148 -187417199 + THE1C LTR MaLR 1 375 0 306 370 39 8 chr4 14911706 14911833 -187416514 + HAL1 LINE L1 733 863 -1644 574 280 37 50 chr4 14911901 14912250 -187416097 + MLT1H1 LTR MaLR 32 376 -214 400 314 9 0 chr4 14913565 14913670 -187414677 - MER81 DNA DNA 0 114 9 428 296 20 1 chr4 14914011 14914149 -187414198 - MIR SINE MIR -50 158 25 220 339 42 30 chr4 14914451 14914616 -187413731 + MIR SINE MIR 68 234 -28 324 0 0 0 chr4 14914948 14914984 -187413363 + (TG)n Simple_repeat Simple_repeat 2 37 0 325 202 0 36 chr4 14915572 14915656 -187412691 + MLT1J2 LTR MaLR 42 122 -328 318 292 46 39 chr4 14915659 14915789 -187412558 - MIR SINE MIR -35 227 97 1621 150 95 4 chr4 14916422 14916695 -187411652 + AluJb SINE Alu 1 298 -14 186 301 133 12 chr4 14918487 14918570 -187409777 - MIR SINE MIR -11 251 159 2141 124 0 25 chr4 14918604 14918919 -187409428 - AluSx SINE Alu -5 307 1 199 274 214 24 chr4 14918937 14919021 -187409326 - MIR SINE MIR -134 128 29 366 256 73 107 chr4 14919216 14919450 -187408897 + MIR SINE MIR 13 238 -24 21 0 0 0 chr4 14919925 14919946 -187408401 + AT_rich Low_complexity Low_complexity 1 21 0 1194 107 0 11 chr4 14920689 14920866 -187407481 + L1PA2 LINE L1 5981 6155 0 452 347 65 0 chr4 14920920 14921119 -187407228 - MIR SINE MIR -10 252 41 307 354 93 9 chr4 14921143 14921358 -187406989 + L1ME LINE L1 5571 5803 -318 254 303 34 0 chr4 14921691 14921810 -187406537 - L1ME4a LINE L1 -31 6090 5968 320 358 41 8 chr4 14921976 14922099 -187406248 + L2 LINE L2 3146 3272 0 363 368 77 26 chr4 14922562 14922834 -187405513 - HAL1b LINE L1 -666 682 397 2016 108 87 0 chr4 14922856 14923133 -187405214 - AluSg SINE Alu -9 301 1 2460 138 36 7 chr4 14923489 14923901 -187404446 - MSTB LTR MaLR -2 424 1 238 147 118 0 chr4 14925205 14925273 -187403074 + L1ME4a LINE L1 6045 6120 -1 2287 91 3 0 chr4 14925350 14925646 -187402701 + AluY SINE Alu 1 297 -14 1094 221 59 59 chr4 14925685 14926075 -187402272 - MLT1B LTR MaLR 0 390 1 5963 96 19 17 chr4 14926841 14927997 -187400350 - L1PA13 LINE L1 -1 6162 4990 456 133 11 22 chr4 14928008 14928098 -187400249 - L1PA13 LINE L1 -1611 4535 4447 21 0 0 0 chr4 14928999 14929020 -187399327 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 14929886 14929907 -187398440 + AT_rich Low_complexity Low_complexity 1 21 0 214 293 0 0 chr4 14930401 14930459 -187397888 + CT-rich Low_complexity Low_complexity 3 60 0 206 293 52 0 chr4 14930583 14930641 -187397706 - MIR SINE MIR -155 107 47 1939 139 0 29 chr4 14931150 14931459 -187396888 - AluY SINE Alu -11 300 1 750 288 145 78 chr4 14932885 14933404 -187394943 + MLT1E LTR MaLR 20 578 -15 3353 194 80 0 chr4 14933404 14934083 -187394264 - MER44D DNA MER2_type 0 605 1 750 288 145 78 chr4 14934083 14934101 -187394246 + MLT1E LTR MaLR 578 593 0 23 0 0 0 chr4 14934620 14934643 -187393704 + AT_rich Low_complexity Low_complexity 1 23 0 180 77 0 0 chr4 14935449 14935475 -187392872 + (TG)n Simple_repeat Simple_repeat 1 26 0 1279 233 129 35 chr4 14936373 14936776 -187391571 - MSTB2 LTR MaLR -2 455 15 403 266 43 137 chr4 14937108 14937341 -187391006 + MIR SINE MIR 39 249 -13 379 317 68 44 chr4 14938316 14938411 -187389936 + MIR SINE MIR 14 105 -157 21143 32 4 0 chr4 14938411 14941789 -187386558 - L1PA4 LINE L1 0 6155 2798 379 317 68 44 chr4 14941789 14941898 -187386449 + MIR SINE MIR 105 223 -39 1364 225 100 42 chr4 14942114 14942572 -187385775 + MLT1D LTR MaLR 21 505 0 29 28 0 0 chr4 14943093 14943129 -187385218 + AT_rich Low_complexity Low_complexity 1 36 0 932 181 0 0 chr4 14943134 14943278 -187385069 - FRAM SINE Alu -35 141 1 297 296 113 35 chr4 14943317 14943459 -187384888 + MIR SINE MIR 98 250 -12 840 283 36 83 chr4 14943475 14944196 -187384151 - L2 LINE L2 0 3313 2611 223 359 0 0 chr4 14944806 14944870 -187383477 - L2 LINE L2 -3 3269 3206 30 97 0 0 chr4 14945056 14945149 -187383198 + AT_rich Low_complexity Low_complexity 1 93 0 1032 154 16 0 chr4 14945297 14945479 -187382868 + L1PB1 LINE L1 16 200 -6663 * 12296 124 95 27 chr4 14945471 14947998 -187380349 + L1PB1 LINE L1 625 3327 -3535 33615 42 32 2 chr4 14947999 14952212 -187376135 + L1PA2 LINE L1 3 4347 -1799 9020 34 0 1 chr4 14952212 14954076 -187374271 + L1PA2 LINE L1 4293 6155 0 33615 42 32 2 chr4 14954076 14954093 -187374254 + L1PA2 LINE L1 4347 4362 -1784 2103 89 3 92 chr4 14954096 14954432 -187373915 + AluSg SINE Alu 3 308 -2 10997 197 19 8 chr4 14954432 14957950 -187370397 + L1PB1 LINE L1 3319 6867 0 1627 223 0 6 chr4 14958434 14958748 -187369599 + AluJo SINE Alu 1 312 0 579 176 7 18 chr4 14958832 14959105 -187369242 + (TA)n Simple_repeat Simple_repeat 1 270 0 21 36 0 0 chr4 14959315 14959343 -187369004 + AT_rich Low_complexity Low_complexity 1 28 0 26 98 0 0 chr4 14959703 14959785 -187368562 + AT_rich Low_complexity Low_complexity 1 82 0 2321 121 50 0 chr4 14959896 14960259 -187368088 - L1PA11 LINE L1 -2 6172 5792 661 233 184 45 chr4 14960618 14960643 -187367704 - MER74B LTR ERVL -196 426 406 1714 211 30 19 chr4 14960643 14961004 -187367343 + MLT1A1 LTR MaLR 1 365 0 661 233 184 45 chr4 14961004 14961244 -187367103 - MER74B LTR ERVL -216 406 124 553 281 41 81 chr4 14961373 14961735 -187366612 + L1ME3A LINE L1 2865 3205 -2941 273 283 157 60 chr4 14962079 14962379 -187365968 - MLT1H LTR MaLR -198 351 23 414 317 58 64 chr4 14962577 14963287 -187365060 - L2 LINE L2 -24 3289 2538 323 272 129 65 chr4 14963394 14963673 -187364674 - L2 LINE L2 -1405 1909 1613 292 342 40 40 chr4 14964695 14964973 -187363374 + L1MC/D LINE L1 5529 5806 -2002 1358 284 121 15 chr4 14965038 14965660 -187362687 + L1ME3A LINE L1 5282 5960 -210 309 272 22 22 chr4 14965961 14966053 -187362294 + MIR SINE MIR 100 191 -71 334 230 153 90 chr4 14966354 14966576 -187361771 - MER106A DNA MER1_type 0 236 1 228 241 19 0 chr4 14966617 14966671 -187361676 + MIR SINE MIR 183 237 -25 5937 150 96 8 chr4 14967241 14968332 -187360015 - Tigger1 DNA MER2_type -1230 1188 2 426 294 135 12 chr4 14968339 14968509 -187359838 - L2 LINE L2 -252 3061 2871 11480 204 38 40 chr4 14968908 14973122 -187355225 - L1PA15 LINE L1 -3 6813 2608 4617 232 12 24 chr4 14973727 14975115 -187353232 - L1PA15 LINE L1 -4187 2610 1223 622 197 49 0 chr4 14975117 14975239 -187353108 - FLAM_C SINE Alu -3 130 3 24 77 0 0 chr4 14976464 14976516 -187351831 + AT_rich Low_complexity Low_complexity 1 52 0 264 324 39 10 chr4 14976733 14976835 -187351512 - MIR SINE MIR -52 210 106 198 283 0 0 chr4 14977250 14977296 -187351051 - L2 LINE L2 -1 3312 3267 835 199 6 19 chr4 14978140 14978296 -187350051 + FRAM SINE Alu 1 153 -23 2410 30 40 10 chr4 14978668 14978964 -187349383 - AluY SINE Alu -6 305 1 306 260 146 10 chr4 14978993 14979089 -187349258 + L2 LINE L2 3193 3301 -12 213 205 0 0 chr4 14979144 14979183 -187349164 + L2 LINE L2 3271 3309 -4 7726 157 14 41 chr4 14979496 14980819 -187347528 + HSMAR1 DNA Mariner 1 1287 0 618 211 59 7 chr4 14980857 14981009 -187347338 - FRAM SINE Alu 0 40 1 228 269 0 0 chr4 14981282 14981334 -187347013 - L2 LINE L2 -52 3261 3210 331 322 164 6 chr4 14982556 14982727 -187345620 - MIR SINE MIR -16 246 49 634 302 85 43 chr4 14983552 14984993 -187343354 + L1MEc LINE L1 111 1612 -4784 283 234 31 47 chr4 14985076 14985204 -187343143 + L1M4 LINE L1 4812 4937 -1209 21 0 0 0 chr4 14985438 14985459 -187342888 + AT_rich Low_complexity Low_complexity 1 21 0 236 164 55 0 chr4 14988775 14988830 -187339517 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 667 276 70 5 chr4 14988891 14989105 -187339242 - MIR SINE MIR -33 229 2 198 250 241 9 chr4 14989107 14989215 -187339132 + MIR SINE MIR 102 234 -28 342 125 86 16 chr4 14989645 14989773 -187338574 + (TA)n Simple_repeat Simple_repeat 2 138 0 345 244 61 26 chr4 14989773 14989888 -187338459 - MIR SINE MIR -58 204 86 1484 271 138 6 chr4 14989889 14990405 -187337942 - MLT1E LTR MaLR 0 593 10 230 329 24 12 chr4 14990471 14990553 -187337794 - L2 LINE L2 -1387 1927 1845 191 154 13 51 chr4 14990594 14990672 -187337675 + T-rich Low_complexity Low_complexity 4 78 0 431 275 145 18 chr4 14991963 14992239 -187336108 - MER46C DNA MER2_type -27 311 1 315 262 10 7 chr4 14992250 14992341 -187336006 - MIR SINE MIR -64 144 52 181 262 81 58 chr4 14993002 14993174 -187335173 - L2 LINE L2 -25 3288 3113 5867 95 29 2 chr4 14993266 14994855 -187333492 + L1PA10 LINE L1 4536 6149 -19 198 0 0 0 chr4 14994855 14994877 -187333470 + (CAAAT)n Simple_repeat Simple_repeat 2 23 0 362 244 0 0 chr4 14995242 14995320 -187333027 + Ricksha DNA DNA 26 103 -3143 2039 114 29 109 chr4 14995334 14995782 -187332565 + Ricksha DNA DNA 241 652 -1394 4759 135 27 32 chr4 14995785 14996630 -187331717 + Ricksha DNA DNA 1302 2142 -1104 609 141 50 0 chr4 14996632 14996753 -187331594 + Ricksha DNA DNA 3121 3247 -7 412 348 103 13 chr4 14997024 14997257 -187331090 - L2 LINE L2 -508 2806 2553 541 206 65 0 chr4 14997539 14997646 -187330701 - MIR SINE MIR -33 229 116 2068 115 0 4 chr4 14998016 14998294 -187330053 + AluSq SINE Alu 1 277 -36 195 42 0 0 chr4 14998300 14998324 -187330023 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 231 274 0 0 chr4 14999464 14999526 -187328821 - L2 LINE L2 -5 3267 3206 289 338 133 23 chr4 14999678 15000069 -187328278 - L2 LINE L2 -361 2953 2520 210 404 19 10 chr4 15000352 15000456 -187327891 - L2 LINE L2 -52 3220 3116 2452 273 42 7 chr4 15000795 15001656 -187326691 - ERVL-B1 LTR ERVL -4761 893 28 1217 261 7 74 chr4 15001719 15002267 -187326080 - MLT2B1 LTR ERVL -42 512 3 23 54 0 0 chr4 15002538 15002575 -187325772 + AT_rich Low_complexity Low_complexity 1 37 0 364 320 0 47 chr4 15002603 15002775 -187325572 - LTR16A LTR ERVL -112 338 175 447 304 166 16 chr4 15003226 15003473 -187324874 - MLT1J2 LTR MaLR -131 319 36 1923 132 0 74 chr4 15003480 15003805 -187324542 + AluSc SINE Alu 1 301 -8 230 211 29 136 chr4 15003854 15003970 -187324377 + MIR SINE MIR 40 143 -65 255 246 73 55 chr4 15004067 15004177 -187324170 + L3 LINE CR1 1356 1467 -110 369 293 32 70 chr4 15004622 15004779 -187323568 + MIR3 SINE MIR 19 169 -39 210 297 154 0 chr4 15005126 15005273 -187323074 + MIR SINE MIR 49 219 -43 1206 199 70 35 chr4 15005484 15005825 -187322522 + MLT1A2 LTR MaLR 2 354 -20 21 71 0 0 chr4 15006277 15006319 -187322028 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr4 15006401 15006422 -187321925 + AT_rich Low_complexity Low_complexity 1 21 0 658 214 21 7 chr4 15006503 15006648 -187321699 + MLT1A2 LTR MaLR 1 147 -227 23973 149 21 13 chr4 15006667 15011851 -187316496 + L1PA8A LINE L1 731 5991 -455 1220 113 0 0 chr4 15011849 15012035 -187316312 + L1PA8A LINE L1 4144 4329 -1817 * 3182 105 4 21 chr4 15012055 15012532 -187315815 + L1PA8A LINE L1 5662 6130 -1 246 62 0 0 chr4 15012546 15012578 -187315769 + (TG)n Simple_repeat Simple_repeat 2 33 0 225 204 56 0 chr4 15012578 15012632 -187315715 + MLT1A2 LTR MaLR 334 390 0 291 268 24 12 chr4 15012887 15012969 -187315378 + L2 LINE L2 3185 3267 -5 180 97 0 0 chr4 15013128 15013159 -187315188 + (CA)n Simple_repeat Simple_repeat 2 32 0 694 197 71 0 chr4 15013207 15013334 -187315013 + FRAM SINE Alu 21 156 -20 1897 230 82 22 chr4 15013347 15014072 -187314275 - L1ME2 LINE L1 -153 6011 5237 24 53 0 0 chr4 15014076 15014114 -187314233 + AT_rich Low_complexity Low_complexity 1 38 0 390 313 118 30 chr4 15014714 15015046 -187313301 + L2 LINE L2 1614 1974 -1340 227 227 93 67 chr4 15015055 15015130 -187313217 + MIR SINE MIR 2 78 -184 779 94 0 0 chr4 15015248 15015354 -187312993 - L1P3 LINE L1 -6341 120 15 6765 65 2 8 chr4 15015369 15016400 -187311947 + L1PA7 LINE L1 5147 6151 -3 5931 66 4 0 chr4 15016410 15017182 -187311165 + L1PA7 LINE L1 5372 6146 -8 331 349 72 5 chr4 15017324 15017519 -187310828 + MIR SINE MIR 31 238 -24 350 301 8 32 chr4 15018191 15018314 -187310033 + MIR SINE MIR 127 246 -16 378 275 165 46 chr4 15019970 15020065 -187308282 - MIR SINE MIR 0 262 180 2168 114 7 0 chr4 15020065 15020364 -187307983 - AluSq SINE Alu -12 301 1 378 275 165 46 chr4 15020364 15020486 -187307861 - MIR SINE MIR -82 180 19 198 302 28 38 chr4 15020787 15020893 -187307454 + L2 LINE L2 2888 2992 -280 183 322 41 8 chr4 15020914 15021035 -187307312 + L2 LINE L2 3111 3235 -78 455 306 115 11 chr4 15021114 15021297 -187307050 - MIR SINE MIR -43 219 18 2276 96 0 10 chr4 15021655 15021956 -187306391 - AluSg SINE Alu -12 298 1 996 226 62 103 chr4 15022097 15022262 -187306085 - LTR16B LTR ERVL -9 455 285 1666 26 0 0 chr4 15022262 15022457 -187305890 + L1PA2 LINE L1 5959 6153 -2 996 226 62 103 chr4 15022457 15022759 -187305588 - LTR16B LTR ERVL -179 285 7 356 248 111 8 chr4 15024087 15024204 -187304143 + L2 LINE L2 3185 3313 0 333 68 0 0 chr4 15024464 15024508 -187303839 + (TG)n Simple_repeat Simple_repeat 2 45 0 670 224 102 38 chr4 15024948 15025212 -187303135 - L1MD2 LINE L1 -1 6358 6078 1515 225 36 61 chr4 15025238 15025794 -187302553 - L1MD2 LINE L1 -369 5990 5449 21 0 0 0 chr4 15025964 15025985 -187302362 + AT_rich Low_complexity Low_complexity 1 21 0 306 310 124 0 chr4 15026444 15026573 -187301774 - MIR SINE MIR -43 219 75 21 0 0 0 chr4 15027253 15027274 -187301073 + AT_rich Low_complexity Low_complexity 1 21 0 600 164 0 0 chr4 15028133 15028243 -187300104 + GA-rich Low_complexity Low_complexity 3 112 0 216 345 97 28 chr4 15028298 15028443 -187299904 + MIR3 SINE MIR 54 208 0 2430 84 0 0 chr4 15028588 15028886 -187299461 - AluY SINE Alu -13 298 1 361 304 67 15 chr4 15029088 15029223 -187299124 - L2 LINE L2 0 3313 3172 192 135 0 0 chr4 15029379 15029416 -187298931 + (CA)n Simple_repeat Simple_repeat 2 38 0 230 359 28 14 chr4 15029560 15029702 -187298645 - MLT1K LTR MaLR -345 243 100 290 318 55 69 chr4 15029803 15030092 -187298255 - L2 LINE L2 -205 3108 2824 208 241 133 12 chr4 15030671 15030754 -187297593 - MIR3 SINE MIR -113 95 3 240 257 62 9 chr4 15032641 15032754 -187295593 - L1ME4a LINE L1 -6 6115 5997 271 268 21 21 chr4 15032809 15032833 -187295514 + CT-rich Low_complexity Low_complexity 3 26 -73 2353 141 6 3 chr4 15032833 15033196 -187295151 + THE1B LTR MaLR 1 364 0 271 268 21 21 chr4 15033196 15033268 -187295079 + CT-rich Low_complexity Low_complexity 25 99 0 261 242 11 22 chr4 15033295 15033386 -187294961 + L1MC4a LINE L1 5878 5967 -1841 879 123 7 7 chr4 15033527 15033673 -187294674 - Tigger5 DNA MER2_type 0 2323 2178 320 278 232 21 chr4 15033739 15034205 -187294142 + MLT1G1 LTR MaLR 47 555 0 821 252 128 0 chr4 15034254 15034480 -187293867 + MIR SINE MIR 8 262 0 305 175 53 105 chr4 15034606 15034720 -187293627 - L1 LINE L1 -2421 3725 3618 290 119 0 0 chr4 15035793 15035835 -187292512 + Alu SINE Alu 1 42 -258 208 322 115 0 chr4 15036055 15036142 -187292205 - L2 LINE L2 -610 2704 2608 534 118 0 0 chr4 15036229 15036331 -187292016 + (TAGA)n Simple_repeat Simple_repeat 1 102 0 361 241 19 123 chr4 15036645 15036785 -187291562 + MLT1L LTR MaLR 422 534 -81 2167 124 12 3 chr4 15036785 15037123 -187291224 - L1PA13 LINE L1 -9 6154 5814 361 241 19 123 chr4 15037123 15037194 -187291153 + MLT1L LTR MaLR 534 611 -4 194 326 67 0 chr4 15037196 15037285 -187291062 - L2 LINE L2 -25 3247 3153 1053 64 36 0 chr4 15038215 15038355 -187289992 - L1PA11 LINE L1 -2 6172 6028 2492 136 0 36 chr4 15038355 15038773 -187289574 + L1P LINE L1 3426 3828 -2318 409 218 11 0 chr4 15040100 15040187 -187288160 - MLT1G1 LTR MaLR -8 587 500 361 149 9 114 chr4 15040224 15040338 -187288009 + MLT2B1 LTR ERVL 419 520 0 588 277 95 50 chr4 15040433 15040457 -187287890 - MLT1G1 LTR MaLR -229 313 292 1678 184 19 77 chr4 15040457 15040871 -187287476 + MLT1B LTR MaLR 1 390 0 588 277 95 50 chr4 15040871 15041134 -187287213 - MLT1G1 LTR MaLR -250 292 52 441 304 84 36 chr4 15041202 15041452 -187286895 - MIR SINE MIR 0 262 1 2252 105 0 6 chr4 15042264 15042579 -187285768 + AluSq SINE Alu 1 313 0 185 302 0 0 chr4 15042924 15042967 -187285380 - L2 LINE L2 -30 3242 3200 228 282 42 14 chr4 15043264 15043335 -187285012 + L2 LINE L2 3241 3313 0 204 205 0 0 chr4 15043640 15043679 -187284668 + (TG)n Simple_repeat Simple_repeat 1 39 0 411 292 102 35 chr4 15044595 15044821 -187283526 + MIR SINE MIR 8 248 -14 2358 81 3 0 chr4 15044970 15045293 -187283054 + L1PA13 LINE L1 5836 6159 -4 196 300 229 0 chr4 15045379 15045449 -187282898 - MIR SINE MIR -116 146 61 181 350 164 23 chr4 15045959 15046136 -187282211 - L2 LINE L2 -31 3241 3040 2487 177 5 108 chr4 15046598 15047170 -187281177 - MLT2B1 LTR ERVL 0 520 8 189 0 0 0 chr4 15047496 15047517 -187280830 + (A)n Simple_repeat Simple_repeat 1 21 0 397 298 0 9 chr4 15048108 15048222 -187280125 + L2 LINE L2 3189 3301 -12 275 368 64 0 chr4 15048335 15048460 -187279887 + L2 LINE L2 3138 3270 -2 303 326 11 0 chr4 15049920 15050009 -187278338 + L2 LINE L2 3134 3223 -49 477 282 48 71 chr4 15051192 15051529 -187276818 - L3 LINE CR1 -643 934 606 255 374 88 12 chr4 15051649 15051820 -187276527 + MIR SINE MIR 1 184 -78 288 328 57 25 chr4 15052049 15052171 -187276176 + MIR SINE MIR 51 176 -86 1365 220 74 15 chr4 15052179 15052515 -187275832 - MLT1A1 LTR MaLR -8 357 2 4123 85 27 2 chr4 15052930 15053518 -187274829 + L1PA13 LINE L1 5549 6151 -12 540 361 119 5 chr4 15054725 15055152 -187273195 + HAL1 LINE L1 1105 1580 -927 228 240 10 50 chr4 15055237 15055337 -187273010 + T-rich Low_complexity Low_complexity 4 99 0 432 288 171 44 chr4 15055547 15055712 -187272635 - L1M4 LINE L1 -809 5337 5194 2277 112 0 0 chr4 15055712 15056015 -187272332 - AluSx SINE Alu -8 304 2 432 288 171 44 chr4 15056015 15056259 -187272088 - L1M4 LINE L1 -952 5194 4876 299 234 21 0 chr4 15056339 15056433 -187271914 - L1M4 LINE L1 -1322 4824 4729 1754 256 43 24 chr4 15056525 15056948 -187271399 + L1MD2 LINE L1 4293 4737 -1409 1640 47 51 68 chr4 15056948 15057183 -187271164 - AluY SINE Alu -11 300 70 1754 256 43 24 chr4 15057183 15057471 -187270876 + L1MD2 LINE L1 4737 5018 -1128 955 122 30 25 chr4 15057479 15057676 -187270671 + L1MA4 LINE L1 6103 6300 0 1132 220 4 0 chr4 15057788 15058015 -187270332 + L1MB5 LINE L1 5888 6115 -59 2082 214 76 78 chr4 15058102 15058967 -187269380 + L1MD2 LINE L1 5016 5881 -478 180 0 0 0 chr4 15058967 15058987 -187269360 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 2082 214 76 78 chr4 15058987 15059020 -187269327 + L1MD2 LINE L1 5881 5913 -446 2044 131 0 0 chr4 15059020 15059302 -187269045 - AluSx SINE Alu -30 282 1 2082 214 76 78 chr4 15059302 15059379 -187268968 + L1MD2 LINE L1 5913 5988 -371 393 59 0 0 chr4 15059387 15059438 -187268909 + L1PA13 LINE L1 6092 6142 -21 790 239 23 103 chr4 15059450 15059801 -187268546 + L1MD2 LINE L1 6018 6340 -19 536 249 120 75 chr4 15059814 15060307 -187268040 - L1ME3 LINE L1 -238 5924 5410 273 329 123 65 chr4 15060348 15060764 -187267583 + L2 LINE L2 2827 3266 -47 205 386 26 0 chr4 15060829 15060943 -187267404 - L2 LINE L2 -500 2814 2698 218 328 52 35 chr4 15064273 15064389 -187263958 + MIR3 SINE MIR 6 123 -85 310 197 13 26 chr4 15064959 15065035 -187263312 + L1MCa LINE L1 1998 2072 -4354 467 322 60 20 chr4 15065102 15065301 -187263046 + MIR SINE MIR 41 247 -15 412 267 95 60 chr4 15065484 15065949 -187262398 - HAL1b LINE L1 -290 1058 578 1948 163 37 3 chr4 15065976 15066325 -187262022 - MER47A DNA MER2_type -1 365 5 2182 146 50 19 chr4 15066325 15066740 -187261607 + MSTB1 LTR MaLR 1 430 -2 472 300 124 27 chr4 15066777 15067147 -187261200 - HAL1b LINE L1 -871 477 72 464 265 14 104 chr4 15067585 15067796 -187260551 - MIR SINE MIR -1 261 70 290 359 116 15 chr4 15067951 15068210 -187260137 + L2 LINE L2 2579 2863 -451 430 262 83 16 chr4 15068253 15068416 -187259931 - L1PB4 LINE L1 -6 6150 5982 214 310 11 46 chr4 15068568 15068655 -187259692 + L2 LINE L2 3230 3313 0 266 308 100 17 chr4 15068773 15068893 -187259454 + L2 LINE L2 3146 3275 -38 1986 161 0 0 chr4 15068917 15069208 -187259139 + AluSx SINE Alu 3 293 -19 534 347 20 5 chr4 15069939 15070135 -187258212 - MIR SINE MIR -49 213 15 470 301 18 0 chr4 15070226 15070389 -187257958 - MIR SINE MIR -50 212 47 220 318 47 51 chr4 15070489 15070611 -187257736 + MIR SINE MIR 6 129 -79 726 275 126 33 chr4 15071274 15071608 -187256739 - MLT1H1 LTR MaLR -190 365 1 271 237 24 124 chr4 15071717 15071886 -187256461 - MLT1H1-int LTR MaLR -141 1594 1443 216 250 0 111 chr4 15072262 15072334 -187256013 - MIR SINE MIR -73 189 126 1381 281 78 25 chr4 15072627 15073154 -187255193 - MLT1H1 LTR MaLR 0 555 1 413 294 44 40 chr4 15073190 15073465 -187254882 + HAL1 LINE L1 2232 2507 0 766 124 9 0 chr4 15073760 15073873 -187254474 + AluSg1 SINE Alu 1 114 -195 23 0 0 0 chr4 15074214 15074237 -187254110 + AT_rich Low_complexity Low_complexity 1 23 0 1848 130 28 7 chr4 15074758 15075043 -187253304 + AluSg SINE Alu 1 291 -19 1833 109 54 93 chr4 15075430 15075816 -187252531 + THE1C LTR MaLR 5 375 0 314 309 105 40 chr4 15076955 15077107 -187251240 - MIR SINE MIR -81 181 20 746 125 0 0 chr4 15077196 15077316 -187251031 - L1PA15 LINE L1 0 6165 6046 6127 194 25 18 chr4 15077319 15078635 -187249712 + L1P LINE L1 3422 4747 -1399 288 0 0 0 chr4 15078833 15078865 -187249482 + (T)n Simple_repeat Simple_repeat 1 32 0 889 304 88 29 chr4 15080060 15080468 -187247879 - LTR16A LTR ERVL 0 450 19 643 262 30 18 chr4 15080467 15080631 -187247716 + MER45A DNA AcHobo 6 171 -7 * 265 269 92 54 chr4 15081788 15081918 -187246429 + MLT1K LTR MaLR 338 472 -116 2255 66 0 11 chr4 15082589 15082907 -187245440 + AluY SINE Alu 1 315 0 211 350 0 0 chr4 15083377 15083437 -187244910 - L2 LINE L2 -3 3269 3210 305 395 109 8 chr4 15083800 15084159 -187244188 + L2 LINE L2 2136 2530 -784 816 199 0 0 chr4 15084948 15085084 -187243263 + AluJb SINE Alu 156 291 -21 624 27 0 0 chr4 15085143 15085217 -187243130 + (GGAAA)n Simple_repeat Simple_repeat 3 76 0 241 351 40 14 chr4 15085570 15085644 -187242703 + L2 LINE L2 3207 3282 -31 296 410 11 0 chr4 15085683 15085871 -187242476 - MIR SINE MIR -26 236 47 309 109 0 0 chr4 15085944 15085990 -187242357 + (CATA)n Simple_repeat Simple_repeat 3 48 0 397 42 0 0 chr4 15086189 15086237 -187242110 + L1PA6 LINE L1 6094 6141 -13 424 271 117 59 chr4 15086599 15087106 -187241241 + MLT1K LTR MaLR 13 586 -2 24 32 0 0 chr4 15087463 15087494 -187240853 + AT_rich Low_complexity Low_complexity 1 31 0 464 345 59 18 chr4 15087554 15087862 -187240485 + L2 LINE L2 2737 3055 -217 532 293 98 18 chr4 15088696 15088921 -187239426 - MIR SINE MIR -7 255 13 948 188 61 14 chr4 15089722 15089999 -187238348 - MER33 DNA MER1_type -34 290 1 296 286 132 0 chr4 15091234 15091325 -187237022 - L2 LINE L2 -29 3243 3141 21 0 0 0 chr4 15091404 15091425 -187236922 + AT_rich Low_complexity Low_complexity 1 21 0 601 292 36 16 chr4 15091565 15091757 -187236590 + MER63A DNA MER1_type 6 201 -9 393 176 0 0 chr4 15091821 15091895 -187236452 - MLT1B LTR MaLR 0 390 317 1260 70 0 12 chr4 15091897 15092068 -187236279 - L1PA6 LINE L1 -4 6150 5982 1829 23 0 0 chr4 15092068 15092288 -187236059 + L1PA6 LINE L1 5751 5970 -184 694 256 11 66 chr4 15092288 15092561 -187235786 - MLT1B LTR MaLR -67 323 66 1990 143 14 25 chr4 15092585 15092950 -187235397 + THE1C LTR MaLR 15 375 0 288 203 0 0 chr4 15092950 15093005 -187235342 - MLT1B LTR MaLR -335 55 1 2386 66 0 13 chr4 15093216 15093520 -187234827 - AluY SINE Alu -9 302 3 208 316 158 15 chr4 15093921 15094054 -187234293 - L2 LINE L2 -601 2713 2562 219 265 171 72 chr4 15094769 15094798 -187233549 - MIR SINE MIR -49 213 188 2147 87 10 42 chr4 15094798 15095107 -187233240 - AluSx SINE Alu -13 299 1 219 265 171 72 chr4 15095107 15095258 -187233089 - MIR SINE MIR -74 188 15 180 379 0 11 chr4 15095438 15095525 -187232822 + L2 LINE L2 2697 2782 -532 306 308 91 71 chr4 15095763 15096016 -187232331 - L3 LINE CR1 -83 1494 1237 2013 170 0 0 chr4 15096077 15096388 -187231959 - AluSx SINE Alu -1 311 1 292 232 0 0 chr4 15096587 15096643 -187231704 + Tigger3(Golem) DNA MER2_type 2 57 -2972 834 182 45 0 chr4 15096643 15096797 -187231550 + Tigger3(Golem) DNA MER2_type 2867 3027 -2 1176 148 80 0 chr4 15096809 15097046 -187231301 - Tigger2 DNA MER2_type 0 2718 2463 2740 182 42 51 chr4 15097101 15097822 -187230525 - Tigger2 DNA MER2_type -1974 744 31 318 26 0 0 chr4 15097853 15097892 -187230455 + (CA)n Simple_repeat Simple_repeat 2 40 0 252 351 99 0 chr4 15098510 15098621 -187229726 - MER5B DNA MER1_type -1 177 56 257 306 18 63 chr4 15098780 15098891 -187229456 + MIR SINE MIR 87 192 -70 362 312 106 16 chr4 15099110 15099299 -187229048 + L1MC4 LINE L1 7836 8041 -1 359 225 146 0 chr4 15099821 15099910 -187228437 - L2 LINE L2 -2 3270 3169 278 307 54 60 chr4 15100045 15100211 -187228136 - MIR3 SINE MIR -39 169 5 283 340 73 20 chr4 15100699 15100849 -187227498 + MIR SINE MIR 105 262 0 245 170 57 0 chr4 15100857 15100910 -187227437 + MIR SINE MIR 136 191 -71 1871 201 9 5 chr4 15101115 15101547 -187226800 + L1P LINE L1 4361 4794 -1352 2261 132 28 17 chr4 15101655 15102011 -187226336 + THE1B LTR MaLR 1 360 -4 317 255 64 0 chr4 15102054 15102148 -187226199 + MER5A DNA MER1_type 9 108 -81 468 0 0 0 chr4 15102175 15102227 -187226120 + (TG)n Simple_repeat Simple_repeat 2 53 0 22 0 0 0 chr4 15102507 15102529 -187225818 + AT_rich Low_complexity Low_complexity 1 22 0 2016 152 0 0 chr4 15102714 15103041 -187225306 + AluSx SINE Alu 1 327 0 1486 226 31 19 chr4 15103074 15103489 -187224858 - L1ME3 LINE L1 -117 6045 5626 239 346 40 0 chr4 15103706 15103807 -187224540 + MIR3 SINE MIR 90 194 -14 262 325 108 30 chr4 15104731 15104934 -187223413 - MIR SINE MIR -19 243 25 641 291 39 6 chr4 15105173 15105355 -187222992 + MIR SINE MIR 18 205 -57 220 364 136 0 chr4 15105714 15105832 -187222515 - L2 LINE L2 -37 3235 3102 620 117 0 26 chr4 15106102 15106256 -187222091 + (TA)n Simple_repeat Simple_repeat 1 150 0 2169 84 42 11 chr4 15106256 15106542 -187221805 - AluY SINE Alu -16 295 1 225 196 0 0 chr4 15106672 15106718 -187221629 - MLT1-int LTR MaLR -115 1256 1211 318 345 9 9 chr4 15107349 15107462 -187220885 + L2 LINE L2 3151 3263 -9 342 115 0 0 chr4 15107809 15107861 -187220486 + (TCTCC)n Simple_repeat Simple_repeat 4 55 0 495 171 8 17 chr4 15107861 15107978 -187220369 + CT-rich Low_complexity Low_complexity 2 117 0 290 266 169 64 chr4 15108483 15108750 -187219597 + MLT1H LTR MaLR 1 295 -254 770 223 26 10 chr4 15109361 15109554 -187218793 + MLT2D LTR ERVL 1 196 -218 182 118 29 0 chr4 15109559 15109593 -187218754 + A-rich Low_complexity Low_complexity 4 38 0 845 113 7 0 chr4 15109699 15109820 -187218527 + (GGGAA)n Simple_repeat Simple_repeat 1 263 0 845 113 7 0 chr4 15109820 15109961 -187218386 + (GGGAA)n Simple_repeat Simple_repeat 4 145 0 477 290 6 22 chr4 15110044 15110204 -187218143 + MLT2B1 LTR ERVL 299 457 -63 243 0 0 0 chr4 15110204 15110231 -187218116 + (TC)n Simple_repeat Simple_repeat 2 28 0 477 290 6 22 chr4 15110231 15110253 -187218094 + MLT2B1 LTR ERVL 457 478 -42 270 0 0 0 chr4 15110253 15110283 -187218064 + (TG)n Simple_repeat Simple_repeat 2 31 0 279 173 0 0 chr4 15110298 15110350 -187217997 + (TA)n Simple_repeat Simple_repeat 1 52 0 724 253 6 6 chr4 15110460 15110618 -187217729 + AluJo SINE Alu 121 278 -34 804 65 0 0 chr4 15110623 15110730 -187217617 + (GGAA)n Simple_repeat Simple_repeat 4 110 0 213 286 16 0 chr4 15110740 15110803 -187217544 + GA-rich Low_complexity Low_complexity 1 64 0 315 278 137 34 chr4 15110954 15111159 -187217188 + L1ME LINE L1 5348 5573 -786 247 290 105 20 chr4 15111277 15111477 -187216870 + L1ME LINE L1 5621 5837 -284 1280 292 65 66 chr4 15111945 15112775 -187215572 - L2 LINE L2 -24 3289 2129 525 270 79 60 chr4 15113557 15113809 -187214538 + MIR SINE MIR 6 262 0 1915 214 59 5 chr4 15113848 15114291 -187214056 + MLT1C LTR MaLR 1 467 0 246 253 58 46 chr4 15114843 15114930 -187213417 + MLT1I LTR MaLR 64 151 -258 504 241 9 0 chr4 15115956 15116064 -187212283 - MER58A DNA MER1_type 0 153 45 334 343 57 43 chr4 15116069 15116279 -187212068 - L2 LINE L2 -341 2973 2761 185 342 25 0 chr4 15116279 15116358 -187211989 - L2 LINE L2 -805 2509 2429 337 250 91 74 chr4 15116516 15116692 -187211655 + MIR SINE MIR 5 183 -79 902 147 88 0 chr4 15116722 15116905 -187211442 + AluSq SINE Alu 136 330 0 245 274 108 29 chr4 15116956 15116974 -187211373 - L2 LINE L2 0 3313 3298 1813 179 3 3 chr4 15116974 15117281 -187211066 - AluJo SINE Alu -5 307 1 245 274 108 29 chr4 15117281 15117364 -187210983 - L2 LINE L2 -15 3298 3204 825 224 20 15 chr4 15117430 15117626 -187210721 + MER20 DNA MER1_type 1 197 -22 267 31 0 0 chr4 15117646 15117678 -187210669 + (TG)n Simple_repeat Simple_repeat 1 32 0 183 365 167 0 chr4 15117705 15117861 -187210486 - L2 LINE L2 -178 3135 2954 21 0 0 0 chr4 15117896 15117917 -187210430 + AT_rich Low_complexity Low_complexity 1 21 0 1577 197 13 26 chr4 15118089 15118393 -187209954 - AluJb SINE Alu -12 300 1 286 327 27 33 chr4 15118422 15118572 -187209775 + MIR SINE MIR 100 248 -14 200 268 0 0 chr4 15118647 15118688 -187209659 + L2 LINE L2 2442 2482 -832 205 156 0 44 chr4 15120318 15120363 -187207984 + (TATATG)n Simple_repeat Simple_repeat 1 43 0 540 160 0 0 chr4 15121309 15121409 -187206938 + GA-rich Low_complexity Low_complexity 1 100 0 216 304 14 0 chr4 15121532 15121601 -187206746 - MIR SINE MIR -115 147 78 225 262 16 49 chr4 15121647 15121708 -187206639 - L2 LINE L2 -82 3190 3132 3637 144 8 16 chr4 15122668 15123286 -187205061 + L1PA15 LINE L1 5532 6144 -21 606 281 26 1 chr4 15123498 15123669 -187204678 - MIR SINE MIR -63 145 19 999 293 87 15 chr4 15124200 15124589 -187203758 - L2 LINE L2 -861 2453 2037 3437 201 42 15 chr4 15124618 15125481 -187202866 - L1MB4 LINE L1 -7 6173 5288 581 214 42 111 chr4 15125480 15125643 -187202704 + L1M4 LINE L1 4864 5037 -1109 * 309 86 0 69 chr4 15125643 15125701 -187202646 - AluSc SINE Alu -4 295 242 581 214 42 111 chr4 15125701 15125738 -187202609 + L1M4 LINE L1 5037 5075 -1071 1941 181 56 17 chr4 15125738 15126148 -187202199 + MSTB LTR MaLR 1 426 0 581 214 42 111 chr4 15126148 15126366 -187201981 + L1M4 LINE L1 5075 5276 -870 1195 242 78 14 chr4 15126402 15126762 -187201585 - L2 LINE L2 -1343 1971 1589 2243 133 0 0 chr4 15127413 15127721 -187200626 + AluSx SINE Alu 5 312 0 1762 202 26 0 chr4 15127805 15128182 -187200165 - MER57A LTR ERV1 -9 394 8 270 193 0 0 chr4 15128473 15128530 -187199817 + (TG)n Simple_repeat Simple_repeat 2 58 0 584 230 37 31 chr4 15128604 15128765 -187199582 + MLT1D LTR MaLR 3 164 -341 40808 35 21 1 chr4 15128786 15134816 -187193531 - L1PA2 LINE L1 0 6155 1 1245 210 38 7 chr4 15134870 15135160 -187193187 + MLT1D LTR MaLR 207 505 0 203 246 217 0 chr4 15135160 15135229 -187193118 - MIR SINE MIR -141 121 38 2135 100 14 14 chr4 15135696 15135986 -187192361 - AluSq SINE Alu -23 290 1 1685 137 24 27 chr4 15135986 15136278 -187192069 + MER7A DNA MER2_type 57 345 -1 181 255 0 20 chr4 15137539 15137590 -187190757 + L2 LINE L2 3264 3313 0 257 312 1 84 chr4 15137676 15137818 -187190529 - MIR3 SINE MIR -73 135 11 184 246 54 78 chr4 15138360 15138527 -187189820 + L2 LINE L2 2614 2776 -538 205 83 0 28 chr4 15138826 15138862 -187189485 + (CAAAA)n Simple_repeat Simple_repeat 4 38 0 474 266 112 48 chr4 15138942 15139130 -187189217 - MIR SINE MIR -18 244 45 1689 168 10 10 chr4 15140438 15140790 -187187557 + L1MA8 LINE L1 5959 6297 0 237 139 0 0 chr4 15141207 15141250 -187187097 + (CA)n Simple_repeat Simple_repeat 2 44 0 2689 102 5 3 chr4 15141729 15142103 -187186244 - THE1C LTR MaLR 0 375 1 320 250 33 25 chr4 15142309 15142429 -187185918 + L1MDa LINE L1 62 182 -6358 926 230 33 15 chr4 15142832 15143163 -187185184 + L1MDa LINE L1 1004 1340 -5203 531 200 0 0 chr4 15143168 15143263 -187185084 - THE1C LTR MaLR -243 132 38 381 146 30 3 chr4 15143457 15143545 -187184802 - MLT1G LTR MaLR 0 581 463 418 308 113 39 chr4 15143579 15143993 -187184354 - MLT1G LTR MaLR -180 410 1 1123 212 9 0 chr4 15144035 15144247 -187184100 + MER58A DNA MER1_type 10 223 -1 393 321 52 44 chr4 15144341 15144590 -187183757 + L2 LINE L2 2898 3148 -165 204 342 103 8 chr4 15145268 15145385 -187182962 - MIR SINE MIR -26 236 109 723 281 92 4 chr4 15145419 15145647 -187182700 - MIR SINE MIR -1 261 14 410 347 7 13 chr4 15146095 15146245 -187182102 + MIR SINE MIR 46 194 -68 291 337 122 10 chr4 15147186 15147382 -187180965 - L2 LINE L2 -785 2529 2312 195 250 67 17 chr4 15147391 15147451 -187180896 + L2 LINE L2 1745 1807 -1507 437 329 61 0 chr4 15147615 15147779 -187180568 + L2 LINE L2 2925 3098 -215 260 306 107 46 chr4 15147831 15148027 -187180320 + L2 LINE L2 3099 3306 -7 827 142 7 0 chr4 15148738 15148879 -187179468 - L1PA16 LINE L1 -1 6165 6024 412 280 32 54 chr4 15148958 15149144 -187179203 - MIR SINE MIR -78 184 3 420 290 109 5 chr4 15149584 15149777 -187178570 + MIR SINE MIR 38 250 -12 354 351 21 12 chr4 15150103 15150269 -187178078 + MIR SINE MIR 58 227 -35 271 235 20 49 chr4 15150322 15150424 -187177923 + GA-rich Low_complexity Low_complexity 4 102 0 1903 185 111 36 chr4 15150518 15150906 -187177441 - MLT1D LTR MaLR 0 505 75 189 0 0 0 chr4 15150906 15150927 -187177420 + (TTTTG)n Simple_repeat Simple_repeat 3 23 0 1903 185 111 36 chr4 15150927 15151008 -187177339 - MLT1D LTR MaLR -430 75 1 25 0 0 0 chr4 15151056 15151081 -187177266 + AT_rich Low_complexity Low_complexity 1 25 0 196 281 47 31 chr4 15151217 15151281 -187177066 + MIR3 SINE MIR 144 208 0 354 281 9 44 chr4 15152349 15152463 -187175884 + MLT1K LTR MaLR 189 298 -290 186 239 23 23 chr4 15152577 15152665 -187175682 + GA-rich Low_complexity Low_complexity 3 90 0 188 33 0 33 chr4 15152737 15152767 -187175580 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 3068 16 0 0 chr4 15152772 15153139 -187175208 - L1HS LINE L1 0 6155 5789 1702 160 7 24 chr4 15153139 15153458 -187174889 - AluSx SINE Alu 0 315 2 201 279 16 16 chr4 15154392 15154453 -187173894 - L2 LINE L2 -60 3253 3193 265 253 27 13 chr4 15154479 15154554 -187173793 + L2 LINE L2 2625 2700 -614 * 811 327 147 7 chr4 15154545 15155076 -187173271 - L2 LINE L2 -253 3060 2455 1618 134 33 39 chr4 15155633 15155940 -187172407 + THE1C LTR MaLR 2 306 -69 296 295 65 29 chr4 15156148 15156287 -187172060 - MIR SINE MIR 0 262 119 315 0 0 0 chr4 15156326 15156361 -187171986 + (TA)n Simple_repeat Simple_repeat 1 35 0 * 333 47 0 0 chr4 15156360 15156403 -187171944 + (GA)n Simple_repeat Simple_repeat 2 44 0 180 306 121 48 chr4 15156439 15156563 -187171784 + L2 LINE L2 3137 3269 -3 408 158 0 0 chr4 15156899 15156975 -187171372 + GA-rich Low_complexity Low_complexity 1 76 0 444 319 115 30 chr4 15157665 15158065 -187170282 + L2 LINE L2 2618 3063 -209 311 265 0 29 chr4 15158868 15158970 -187169377 + (TGAA)n Simple_repeat Simple_repeat 3 101 0 2556 111 8 13 chr4 15159423 15159800 -187168547 + THE1C LTR MaLR 1 375 0 9218 124 51 39 chr4 15159802 15161360 -187166987 + THE1C-int LTR MaLR 3 1580 0 2297 135 13 19 chr4 15161360 15161737 -187166610 + THE1C LTR MaLR 1 375 0 242 218 18 18 chr4 15161778 15161833 -187166514 + L3 LINE CR1 1519 1573 -4 407 305 51 0 chr4 15161879 15162056 -187166291 - LTR33A LTR ERVL -1 522 337 518 206 115 57 chr4 15162105 15162314 -187166033 - LTR50 LTR ERVL -572 223 3 257 301 130 63 chr4 15162655 15162894 -187165453 + MIR SINE MIR 6 260 -2 22 0 0 0 chr4 15164154 15164176 -187164171 + AT_rich Low_complexity Low_complexity 1 22 0 583 293 5 50 chr4 15164424 15164622 -187163725 - MIR SINE MIR -54 208 20 2073 119 10 3 chr4 15165199 15165493 -187162854 - AluSc SINE Alu -13 296 1 681 224 53 0 chr4 15165549 15165719 -187162628 - MIR SINE MIR -10 252 74 200 327 96 0 chr4 15165770 15165874 -187162473 + MIR SINE MIR 123 236 -26 206 283 59 59 chr4 15165965 15166117 -187162230 + MIR SINE MIR 50 201 -61 2258 213 65 37 chr4 15166120 15166286 -187162061 + MLT1E LTR MaLR 4 164 -429 1312 132 44 31 chr4 15166286 15166513 -187161834 - MER30 DNA MER1_type 0 230 1 2258 213 65 37 chr4 15166513 15166920 -187161427 + MLT1E LTR MaLR 164 593 0 209 274 34 120 chr4 15167919 15168036 -187160311 - MIR SINE MIR -81 127 21 2533 67 3 0 chr4 15168079 15168407 -187159940 + L1PA8 LINE L1 5838 6166 -6 182 250 0 39 chr4 15168844 15168896 -187159451 - L2 LINE L2 0 3313 3264 927 265 77 8 chr4 15169167 15169401 -187158946 + MIR SINE MIR 13 262 0 380 284 35 7 chr4 15169743 15169884 -187158463 + MIR SINE MIR 32 176 -86 258 259 39 49 chr4 15171120 15171256 -187157091 + MIR SINE MIR 50 182 -63 239 367 39 33 chr4 15171455 15171635 -187156712 - L2 LINE L2 -173 3099 2919 2563 105 8 3 chr4 15171655 15172016 -187156331 + THE1B LTR MaLR 1 363 -1 354 309 24 0 chr4 15172899 15173025 -187155322 - MER94 DNA DNA -5 129 1 735 174 37 0 chr4 15173107 15173297 -187155050 - Charlie5 DNA MER1_type -49 2563 2367 270 0 0 0 chr4 15174131 15174161 -187154186 + (CA)n Simple_repeat Simple_repeat 2 31 0 2105 113 61 28 chr4 15174270 15174633 -187153714 + THE1C LTR MaLR 1 375 0 187 281 198 31 chr4 15175311 15175407 -187152940 + MIR SINE MIR 3 114 -148 526 303 114 13 chr4 15175424 15175652 -187152695 - MIR SINE MIR 0 262 12 842 204 7 0 chr4 15175951 15176103 -187152244 - FRAM SINE Alu -10 156 4 467 236 35 7 chr4 15176221 15176365 -187151982 - MER65B LTR ERV1 -383 148 1 249 260 71 63 chr4 15177003 15177130 -187151217 + MIR3 SINE MIR 15 142 -66 39 68 0 19 chr4 15177185 15177227 -187151120 + AT_rich Low_complexity Low_complexity 1 42 -59 193 0 94 0 chr4 15177227 15177259 -187151088 + T-rich Low_complexity Low_complexity 3 37 0 39 68 0 19 chr4 15177259 15177319 -187151028 + AT_rich Low_complexity Low_complexity 42 101 0 27 29 0 0 chr4 15178051 15178085 -187150262 + AT_rich Low_complexity Low_complexity 1 34 0 281 344 57 38 chr4 15178632 15178789 -187149558 - MIR SINE MIR 0 262 103 272 229 60 36 chr4 15178997 15179080 -187149267 - MLT1I LTR MaLR -197 212 128 362 289 58 58 chr4 15179538 15179711 -187148636 - MIR SINE MIR -4 258 86 462 381 115 19 chr4 15180899 15181379 -187146968 + L1ME3A LINE L1 57 582 -5537 765 287 68 45 chr4 15181771 15183239 -187145108 + L1ME3A LINE L1 4421 5923 -230 2120 32 0 0 chr4 15183443 15183690 -187144657 + L1PA5 LINE L1 5900 6146 -8 46 62 0 0 chr4 15183703 15183784 -187144563 + AT_rich Low_complexity Low_complexity 1 81 0 276 310 115 11 chr4 15183881 15184055 -187144292 - MIR SINE MIR -2 260 69 201 108 0 0 chr4 15184316 15184353 -187143994 + (A)n Simple_repeat Simple_repeat 1 37 0 389 270 108 45 chr4 15184439 15184661 -187143686 - MIR SINE MIR -6 256 21 23 54 0 0 chr4 15184814 15184851 -187143496 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr4 15184889 15184912 -187143435 + AT_rich Low_complexity Low_complexity 1 23 0 469 253 11 113 chr4 15386154 15386340 -186942007 - MIR SINE MIR -10 252 86 183 209 163 0 chr4 15386913 15386956 -186941391 - L2 LINE L2 -12 3260 3211 291 200 14 29 chr4 15386978 15387048 -186941299 + MIR SINE MIR 146 214 -48 325 331 62 12 chr4 15387074 15387234 -186941113 - MIR SINE MIR -15 247 80 199 298 0 0 chr4 15387355 15387412 -186940935 - L2 LINE L2 0 3272 3216 * 672 296 18 22 chr4 15387379 15387605 -186940742 - MIR SINE MIR -18 244 20 270 259 14 5 chr4 15388793 15388882 -186939465 + MIR SINE MIR 65 153 -55 199 290 50 10 chr4 15388916 15389016 -186939331 - MIR SINE MIR -11 251 148 190 244 90 26 chr4 15389000 15389078 -186939269 + MIR SINE MIR 174 256 -6 * 199 162 27 0 chr4 15389205 15389242 -186939105 - MIR3 SINE MIR -9 199 162 6864 17 0 0 chr4 15389407 15390187 -186938160 + L1PA3 LINE L1 5376 6155 0 313 85 0 0 chr4 15390791 15390838 -186937509 + MADE1 DNA Mariner 34 80 0 1927 166 19 25 chr4 15391983 15392350 -186935997 - MLT1A1 LTR MaLR 0 365 1 356 292 13 49 chr4 15392626 15392827 -186935520 - MIR SINE MIR -58 150 7 381 22 0 0 chr4 15392880 15392926 -186935421 + (CA)n Simple_repeat Simple_repeat 1 46 0 294 344 0 21 chr4 15393072 15393168 -186935179 - MIR SINE MIR -149 113 20 352 275 50 8 chr4 15393707 15393827 -186934520 + L1ME1 LINE L1 308 432 -5991 3278 260 79 44 chr4 15394045 15397835 -186930512 + L1ME1 LINE L1 655 4589 -2352 383 156 16 0 chr4 15397836 15397900 -186930447 + MLT1D LTR MaLR 1 65 -440 255 153 92 0 chr4 15397900 15397998 -186930349 + (TA)n Simple_repeat Simple_repeat 1 107 0 1256 243 44 28 chr4 15398065 15398452 -186929895 + MLT1D LTR MaLR 113 505 0 775 203 7 0 chr4 15398453 15398601 -186929746 - HERVL74 LTR ERVL -3919 1766 1618 2361 228 103 15 chr4 15398710 15400081 -186928266 + L1ME1 LINE L1 5464 6954 -7 388 226 24 0 chr4 15400234 15400318 -186928029 + L3 LINE CR1 1232 1317 -260 961 227 58 18 chr4 15402048 15402273 -186926074 + MIR SINE MIR 28 261 -1 191 88 29 0 chr4 15402422 15402456 -186925891 + (TGAA)n Simple_repeat Simple_repeat 3 37 0 388 295 165 19 chr4 15402641 15402809 -186925538 + MIR SINE MIR 11 191 -22 378 0 0 0 chr4 15403178 15403220 -186925127 + (TC)n Simple_repeat Simple_repeat 1 42 0 236 233 67 0 chr4 15403246 15403306 -186925041 - L2 LINE L2 0 3272 3209 657 227 97 3 chr4 15403842 15404071 -186924276 - MIR SINE MIR -6 256 7 267 293 8 119 chr4 15404155 15404408 -186923939 + L2 LINE L2 2272 2496 -818 1293 318 16 11 chr4 15404528 15404908 -186923439 + L2 LINE L2 2075 2456 -858 * 1624 261 14 31 chr4 15404897 15405322 -186923025 + L2 LINE L2 2896 3313 0 229 266 71 112 chr4 15405364 15405533 -186922814 + L2 LINE L2 2922 3083 -189 1906 223 69 42 chr4 15406301 15406852 -186921495 + L2 LINE L2 2175 2740 -574 2066 164 180 0 chr4 15406885 15407323 -186921024 + MLT2B1 LTR ERVL 1 517 -3 2857 166 55 24 chr4 15407331 15407914 -186920433 - L1MB5 LINE L1 -13 6161 5561 1557 227 30 53 chr4 15407922 15408261 -186920086 + L2 LINE L2 2757 3076 -237 1929 199 38 0 chr4 15408261 15408633 -186919714 - MLT1B LTR MaLR -4 386 1 1557 227 30 53 chr4 15408633 15408862 -186919485 + L2 LINE L2 3076 3309 -4 345 308 30 30 chr4 15409283 15409416 -186918931 + MIR3 SINE MIR 44 176 -32 * 493 317 117 54 chr4 15409401 15410221 -186918126 + L2 LINE L2 2384 3253 -19 515 309 11 17 chr4 15410370 15410548 -186917799 - MIR SINE MIR -2 260 84 201 121 0 0 chr4 15410916 15410949 -186917398 + (TG)n Simple_repeat Simple_repeat 2 34 0 304 319 146 62 chr4 15411361 15411505 -186916842 - MER91A DNA MER1_type -39 157 2 384 322 65 73 chr4 15411510 15411864 -186916483 + L2 LINE L2 2877 3227 -45 192 237 0 0 chr4 15411893 15411931 -186916416 + L2 LINE L2 3216 3253 -19 15112 159 34 21 chr4 15512018 15512604 -186815743 + L1MA3 LINE L1 1841 2418 -5147 4123 120 25 73 chr4 15512604 15513038 -186815309 - LTR8 LTR ERV1 0 691 304 1689 94 0 0 chr4 15513038 15513251 -186815096 - AluSg/x SINE Alu -15 297 85 4123 120 25 73 chr4 15513251 15513542 -186814805 - LTR8 LTR ERV1 -387 304 1 15112 159 34 21 chr4 15513542 15517562 -186810785 + L1MA3 LINE L1 2418 6521 -1044 2441 63 10 3 chr4 15517562 15517864 -186810483 - AluY SINE Alu -7 304 1 15112 159 34 21 chr4 15517864 15518109 -186810238 + L1MA3 LINE L1 6521 6761 -804 845 132 0 0 chr4 15518112 15518226 -186810121 + AluJb SINE Alu 5 118 -194 387 0 0 0 chr4 15518232 15518275 -186810072 + (TAA)n Simple_repeat Simple_repeat 2 44 0 6693 101 13 9 chr4 15518276 15519249 -186809098 + L1MA3 LINE L1 6748 7724 0 765 212 5 26 chr4 15519256 15519449 -186808898 + LTR37A LTR ERV1 235 423 -3 274 284 40 0 chr4 15520035 15520109 -186808238 - MER20 DNA MER1_type -83 136 60 240 196 20 0 chr4 15520268 15520319 -186808028 + Charlie8 DNA MER1_type 2356 2407 -10 296 301 118 0 chr4 15520351 15520487 -186807860 - MIR SINE MIR -58 204 53 256 303 83 23 chr4 15521136 15521268 -186807079 - MIR SINE MIR -12 250 111 256 284 11 53 chr4 15521309 15521404 -186806943 - MIR SINE MIR -20 242 152 368 301 124 0 chr4 15521426 15521539 -186806808 - L2 LINE L2 -23 3249 3123 1730 193 107 21 chr4 15521610 15522040 -186806307 - MLT1C LTR MaLR 0 467 1 351 343 29 15 chr4 15522044 15522181 -186806166 - MIR SINE MIR -120 142 4 293 222 37 56 chr4 15522259 15522367 -186805980 - L2 LINE L2 0 3313 3208 313 236 179 0 chr4 15522455 15522595 -186805752 - L2 LINE L2 -266 3047 2883 2021 134 109 3 chr4 15523495 15523824 -186804523 - THE1B LTR MaLR 0 364 1 395 274 30 50 chr4 15524034 15524235 -186804112 + MIR SINE MIR 23 219 -43 292 184 238 54 chr4 15524973 15525120 -186803227 + LTR67 LTR ERVL 356 529 -28 396 178 52 44 chr4 15525345 15525480 -186802867 - MER96B DNA MER1_type? -238 179 44 237 293 81 16 chr4 15525538 15525661 -186802686 - L2 LINE L2 -1 3271 3141 482 242 0 8 chr4 15527321 15527441 -186800906 + L2 LINE L2 3195 3313 0 382 276 29 26 chr4 15527467 15527611 -186800736 + MIR SINE MIR 16 160 -62 1755 186 0 0 chr4 15527630 15527910 -186800437 + AluJb SINE Alu 1 280 -32 565 37 0 106 chr4 15527927 15528115 -186800232 + (GGA)n Simple_repeat Simple_repeat 3 170 0 211 119 71 0 chr4 15528117 15528159 -186800188 + GA-rich Low_complexity Low_complexity 2 46 0 241 315 73 45 chr4 15528258 15528436 -186799911 - L2 LINE L2 -5 3308 3126 203 314 137 33 chr4 15528509 15528662 -186799685 + MIR3 SINE MIR 32 200 -8 2000 139 45 12 chr4 15529018 15529355 -186798992 - MER7A DNA MER2_type 0 346 1 422 305 63 11 chr4 15529460 15529634 -186798713 + MIR SINE MIR 3 185 -77 324 309 163 17 chr4 15529988 15530166 -186798181 + MIR SINE MIR 5 208 -54 886 119 0 38 chr4 15530387 15530572 -186797775 + (GGGA)n Simple_repeat Simple_repeat 1 178 0 231 247 97 11 chr4 15530931 15531024 -186797323 - MIR SINE MIR -62 200 100 22 0 0 0 chr4 15531089 15531111 -186797236 + AT_rich Low_complexity Low_complexity 1 22 0 1622 204 0 7 chr4 15531111 15531395 -186796952 - AluJo SINE Alu -30 282 1 311 372 9 0 chr4 15531702 15531815 -186796532 + MIR3 SINE MIR 9 122 -86 261 290 46 53 chr4 15532350 15532481 -186795866 - MIR3 SINE MIR -33 175 46 314 260 156 58 chr4 15533194 15533322 -186795025 + L2 LINE L2 2626 2740 -574 2171 152 98 0 chr4 15533322 15533710 -186794637 + MSTB LTR MaLR 1 426 0 314 260 156 58 chr4 15533710 15533889 -186794458 + L2 LINE L2 2740 2963 -351 184 277 60 24 chr4 15534044 15534127 -186794220 + L2 LINE L2 3142 3227 -45 307 257 20 47 chr4 15535328 15535476 -186792871 + L1ME4a LINE L1 5978 6121 0 491 273 96 43 chr4 15536423 15536610 -186791737 + MIR SINE MIR 48 244 -18 1366 146 55 49 chr4 15536744 15537052 -186791295 + AluJo SINE Alu 1 310 -2 974 276 166 18 chr4 15537554 15537989 -186790358 - L2 LINE L2 -1 3312 2814 1387 142 9 47 chr4 15539846 15540149 -186788198 + MLT1B LTR MaLR 1 345 -122 549 205 16 39 chr4 15540165 15540292 -186788055 - MER61D LTR ERV1 -17 484 361 535 167 167 0 chr4 15540890 15540998 -186787349 + MLT1B LTR MaLR 342 467 0 331 238 67 38 chr4 15540999 15541104 -186787243 - MIR SINE MIR -90 172 65 405 280 26 67 chr4 15541459 15541652 -186786695 - MIR SINE MIR -66 196 12 227 240 93 27 chr4 15541633 15541708 -186786639 - L2 LINE L2 -4 3268 3189 * 1452 160 27 0 chr4 15542496 15542759 -186785588 - L1MB5 LINE L1 0 6174 5905 571 243 40 7 chr4 15543052 15543200 -186785147 + MIR SINE MIR 80 232 -30 180 266 101 38 chr4 15543222 15543301 -186785046 - MIR SINE MIR -88 174 91 364 243 47 19 chr4 15543335 15543442 -186784905 - MIR SINE MIR -91 171 62 557 272 70 35 chr4 15544742 15544970 -186783377 - MIR SINE MIR -10 252 17 323 222 156 11 chr4 15546517 15546607 -186781740 - MIR SINE MIR -50 212 110 345 307 44 7 chr4 15546609 15546746 -186781601 - MLT1K LTR MaLR 0 588 447 201 200 67 0 chr4 15547255 15547300 -186781047 - L2 LINE L2 0 3313 3266 450 0 0 0 chr4 15547471 15547521 -186780826 + (CA)n Simple_repeat Simple_repeat 1 50 0 1685 178 0 29 chr4 15547758 15548073 -186780274 - AluJb SINE Alu -4 308 3 1759 126 0 60 chr4 15548788 15549143 -186779204 - AluSx SINE Alu 0 337 1 2208 104 0 3 chr4 15549590 15549899 -186778448 - AluSx SINE Alu -3 309 2 2022 224 143 15 chr4 15549923 15550656 -186777691 - L1M4 LINE L1 -1949 4197 3371 21 0 0 0 chr4 15551044 15551065 -186777282 + AT_rich Low_complexity Low_complexity 1 21 0 452 251 82 71 chr4 15551664 15551847 -186776500 - MLT1J LTR MaLR -49 462 278 373 250 35 42 chr4 15551868 15552012 -186776335 + MLT1A1 LTR MaLR 1 143 -222 * 594 199 8 69 chr4 15551990 15552121 -186776226 + MLT1A1 LTR MaLR 94 217 -157 737 225 47 12 chr4 15552807 15552976 -186775371 - MER45A DNA AcHobo 0 178 4 2271 215 53 55 chr4 15553465 15554010 -186774337 - MER77 LTR ERV1 -8 597 54 326 271 36 22 chr4 15554117 15554240 -186774107 - MIR SINE MIR -66 142 64 613 248 75 49 chr4 15555223 15555584 -186772763 - MLT1C LTR MaLR -96 371 5 292 279 67 29 chr4 15555585 15555689 -186772658 - L2 LINE L2 -28 3285 3178 2090 159 6 0 chr4 15555692 15556031 -186772316 + MER47A DNA MER2_type 1 341 -25 287 289 83 16 chr4 15556050 15556171 -186772176 - L2 LINE L2 -155 3158 3030 1541 138 54 4 chr4 15556336 15556596 -186771751 - MER47A DNA MER2_type -63 303 31 919 191 0 0 chr4 15556977 15557134 -186771213 - FRAM SINE Alu -5 161 5 1790 214 42 20 chr4 15557737 15558194 -186770153 + MLT1C LTR MaLR 1 467 0 1841 153 130 84 chr4 15559242 15559705 -186768642 - MER74A LTR ERVL -60 498 15 3510 186 60 3 chr4 15560889 15561583 -186766764 + L1MB8 LINE L1 5445 6178 0 3562 158 17 12 chr4 15561586 15562227 -186766120 + L1MC1 LINE L1 5677 6320 -13 1182 167 23 0 chr4 15562231 15562446 -186765901 + L1MA4 LINE L1 6035 6254 -46 4653 62 25 6 chr4 15562446 15563462 -186764885 + MER11A LTR ERVK 1 1266 0 252 106 0 0 chr4 15563462 15563509 -186764838 + L1MA4 LINE L1 6250 6296 -4 689 102 0 10 chr4 15563682 15563780 -186764567 + MER4A LTR ERV1 2 98 -566 1952 99 161 78 chr4 15563780 15564153 -186764194 + MER4A LTR ERV1 261 664 0 341 274 137 13 chr4 15564159 15564312 -186764035 - L1ME4a LINE L1 -254 5867 5696 218 354 0 0 chr4 15564357 15564439 -186763908 - MIR SINE MIR -10 252 171 1095 110 0 0 chr4 15564440 15564594 -186763753 + AluY SINE Alu 142 295 -16 488 329 25 6 chr4 15564604 15564765 -186763582 - MIR SINE MIR -89 173 10 354 313 61 38 chr4 15564794 15565107 -186763240 - L1ME4a LINE L1 -517 5604 5285 1913 125 0 4 chr4 15565184 15565465 -186762882 - AluSx SINE Alu -32 280 1 297 329 133 0 chr4 15566681 15566824 -186761523 + MIR SINE MIR 26 187 -75 346 222 118 19 chr4 15567025 15567146 -186761201 + MIR SINE MIR 4 124 -84 223 286 63 0 chr4 15567634 15567697 -186760650 + MIR SINE MIR 84 150 -112 2027 134 0 13 chr4 15568028 15568341 -186760006 - AluSx SINE Alu -3 309 1 249 164 73 18 chr4 15569371 15569426 -186758921 + MLT1K LTR MaLR 529 586 -2 189 299 65 56 chr4 15569534 15569641 -186758706 + L2 LINE L2 3161 3268 -4 367 319 44 19 chr4 15569724 15569930 -186758417 - MIR SINE MIR -57 205 1 46 78 0 0 chr4 15570940 15571042 -186757305 + AT_rich Low_complexity Low_complexity 1 102 0 353 274 112 27 chr4 15571171 15571494 -186756853 + L1ME4a LINE L1 5564 5993 -128 1921 115 0 14 chr4 15571506 15571794 -186756553 - L1PA14 LINE L1 -16 6145 5862 856 184 11 6 chr4 15572077 15572251 -186756096 + FRAM SINE Alu 1 167 -9 576 291 119 26 chr4 15572560 15572787 -186755560 + MIR SINE MIR 9 256 -6 2097 104 14 0 chr4 15572790 15573087 -186755260 + AluSx SINE Alu 1 301 -11 453 337 181 21 chr4 15573924 15574345 -186754002 + L2 LINE L2 2768 3259 -54 207 258 32 86 chr4 15574552 15574645 -186753702 + MIR SINE MIR 17 104 -104 211 189 113 0 chr4 15574805 15574858 -186753489 - MER5A DNA MER1_type -4 185 127 2342 68 0 0 chr4 15574862 15575154 -186753193 + AluSx SINE Alu 1 292 -20 680 228 15 0 chr4 15575168 15575304 -186753043 - MER5A DNA MER1_type -51 138 1 317 259 71 0 chr4 15575354 15575439 -186752908 - MIR SINE MIR -54 208 118 534 261 70 25 chr4 15575684 15575841 -186752506 + MIR SINE MIR 51 214 -48 313 219 82 0 chr4 15576318 15576391 -186751956 - L2 LINE L2 -1 3312 3234 703 238 117 70 chr4 15577756 15578188 -186750159 - MLT1J LTR MaLR -35 460 9 183 280 60 0 chr4 15578302 15578352 -186749995 - MIR3 SINE MIR -3 205 153 384 233 81 0 chr4 15578416 15578502 -186749845 + L2 LINE L2 3211 3303 -10 25 0 0 0 chr4 15580462 15580487 -186747860 + AT_rich Low_complexity Low_complexity 1 25 0 26 30 0 0 chr4 15580983 15581016 -186747331 + AT_rich Low_complexity Low_complexity 1 33 0 455 266 8 8 chr4 15581934 15581979 -186746368 - L1MA10 LINE L1 -8 6326 6282 275 292 215 7 chr4 15581979 15582123 -186746224 - L1ME1 LINE L1 -44 6122 5949 837 142 8 22 chr4 15582392 15582526 -186745821 - FLAM_C SINE Alu -10 133 2 2458 57 0 0 chr4 15583082 15583380 -186744967 + AluY SINE Alu 1 298 -13 774 318 148 19 chr4 15583469 15584194 -186744153 + L2 LINE L2 2421 3248 -65 2328 92 7 0 chr4 15584780 15585084 -186743263 - AluSg SINE Alu -4 306 1 290 253 27 11 chr4 15585365 15585538 -186742809 + MIR SINE MIR 21 262 0 511 217 103 75 chr4 15585551 15585832 -186742515 - L1ME1 LINE L1 -247 5874 5586 1821 152 17 0 chr4 15585909 15586198 -186742149 - AluJo SINE Alu -13 299 6 232 306 173 33 chr4 15586243 15586579 -186741768 + L2 LINE L2 2853 3235 -78 231 206 110 41 chr4 15587552 15587625 -186740722 - L2 LINE L2 -9 3263 3186 200 202 173 19 chr4 15587888 15587992 -186740355 + L2 LINE L2 3096 3215 -98 2194 109 3 0 chr4 15590602 15590918 -186737429 - AluSq SINE Alu 0 317 1 419 161 0 0 chr4 15590995 15591057 -186737290 - AluSc SINE Alu -116 193 132 1062 74 0 0 chr4 15591208 15591343 -186737004 - AluY SINE Alu -7 304 170 556 272 185 4 chr4 15591438 15591681 -186736666 - L1ME LINE L1 -318 5803 5517 21 36 0 0 chr4 15592591 15592619 -186735728 + AT_rich Low_complexity Low_complexity 1 28 0 31 58 0 0 chr4 15592832 15592884 -186735463 + AT_rich Low_complexity Low_complexity 1 52 0 25 0 0 0 chr4 15593543 15593568 -186734779 + AT_rich Low_complexity Low_complexity 1 25 0 2035 102 60 0 chr4 15594223 15594506 -186733841 + AluSx SINE Alu 1 300 -12 290 303 81 0 chr4 15594508 15594607 -186733740 - L2 LINE L2 -14 3299 3193 1000 180 40 0 chr4 15594845 15595073 -186733274 + L1MA4 LINE L1 6060 6296 -4 283 212 61 30 chr4 15595314 15595380 -186732967 + MIR SINE MIR 34 101 -107 286 299 118 16 chr4 15595408 15595535 -186732812 + MIR SINE MIR 93 232 -30 260 293 49 0 chr4 15596422 15596504 -186731843 + L2 LINE L2 3187 3272 0 1854 131 36 67 chr4 15596874 15597233 -186731114 - MER7A DNA MER2_type 0 346 1 225 0 0 0 chr4 15597551 15597594 -186730753 + (TG)n Simple_repeat Simple_repeat 1 68 0 225 0 0 0 chr4 15597594 15597619 -186730728 + (TG)n Simple_repeat Simple_repeat 2 26 0 1951 97 87 17 chr4 15599369 15599657 -186728690 - AluSx SINE Alu -4 308 1 2709 225 88 20 chr4 15601825 15602997 -186725350 - L1ME2 LINE L1 -13 6151 4901 701 145 176 57 chr4 15602997 15603160 -186725187 + Charlie1 DNA MER1_type 2508 2707 -54 2237 107 0 0 chr4 15603160 15603458 -186724889 - AluSq SINE Alu -15 298 1 701 145 176 57 chr4 15603458 15603521 -186724826 + Charlie1 DNA MER1_type 2707 2761 0 387 299 21 42 chr4 15603666 15603810 -186724537 - Charlie1a DNA MER1_type -1298 157 17 335 288 101 22 chr4 15603934 15604073 -186724274 + MIR SINE MIR 20 169 -93 320 259 62 0 chr4 15604928 15605009 -186723338 + L2 LINE L2 3227 3312 -1 2422 64 7 0 chr4 15606558 15606856 -186721491 + AluY SINE Alu 1 300 -11 550 276 182 30 chr4 15607119 15607383 -186720964 + L2 LINE L2 3008 3311 -2 * 626 255 95 45 chr4 15607378 15607621 -186720726 - MIR SINE MIR 0 262 8 2149 106 3 3 chr4 15608258 15608559 -186719788 - AluSx SINE Alu -11 301 1 314 200 106 0 chr4 15609034 15609119 -186719228 + MER5A DNA MER1_type 13 106 -83 1125 282 131 4 chr4 15609811 15610315 -186718032 - L1MC4a LINE L1 -1885 5923 5356 534 261 118 49 chr4 15612175 15612378 -186715969 - MIR SINE MIR -26 236 20 360 0 0 0 chr4 15612780 15612820 -186715527 + (TTC)n Simple_repeat Simple_repeat 2 41 0 1056 69 0 0 chr4 15612822 15612952 -186715395 - AluSq/x SINE Alu -179 133 4 1898 129 14 11 chr4 15617522 15617809 -186710538 - AluJo SINE Alu -18 294 7 1789 177 3 10 chr4 15618251 15618550 -186709797 - AluJb SINE Alu -14 298 2 31 0 0 0 chr4 15619279 15619310 -186709037 + AT_rich Low_complexity Low_complexity 1 31 0 232 351 91 6 chr4 15619655 15619820 -186708527 - MIR SINE MIR -24 238 60 23 33 0 0 chr4 15620215 15620245 -186708102 + AT_rich Low_complexity Low_complexity 1 30 0 456 140 150 40 chr4 15621297 15621397 -186706950 + MLT1L LTR MaLR 2 112 -278 1945 142 31 3 chr4 15621406 15621731 -186706616 + MLT1B LTR MaLR 57 390 0 21 36 0 0 chr4 15622348 15622376 -186705971 + AT_rich Low_complexity Low_complexity 1 28 0 22 70 0 0 chr4 15625965 15626008 -186702339 + AT_rich Low_complexity Low_complexity 1 43 0 227 214 0 0 chr4 15626151 15626193 -186702154 + LTR67 LTR ERVL 97 138 -419 * 744 279 109 30 chr4 15626170 15626578 -186701769 + MLT1L LTR MaLR 74 607 -8 1321 174 0 0 chr4 15626666 15626873 -186701474 - AluJb SINE Alu -23 289 83 340 336 26 0 chr4 15627541 15627654 -186700693 + MIR SINE MIR 147 262 0 228 227 93 53 chr4 15627932 15628007 -186700340 - LTR13 LTR ERVK -271 736 659 501 331 0 0 chr4 15628351 15628487 -186699860 - MIR SINE MIR -125 137 2 21 0 0 0 chr4 15628890 15628911 -186699436 + AT_rich Low_complexity Low_complexity 1 21 0 384 281 92 0 chr4 15629470 15629623 -186698724 + MER112 DNA MER1_type 63 229 -31 2038 110 10 13 chr4 15632799 15633098 -186695249 + AluSg SINE Alu 1 298 -12 409 345 148 18 chr4 15634218 15634774 -186693573 + L2 LINE L2 2232 2859 -455 228 314 202 40 chr4 15634847 15635095 -186693252 + L2 LINE L2 2976 3263 -9 2109 110 3 7 chr4 15635910 15636202 -186692145 + AluSq SINE Alu 1 291 -22 720 219 49 12 chr4 15636866 15637030 -186691317 - MIR SINE MIR -81 181 12 356 237 152 56 chr4 15637463 15637676 -186690671 - MIR3 SINE MIR -33 229 20 279 196 0 0 chr4 15637920 15637966 -186690381 - Alu SINE Alu -256 46 1 1914 102 7 46 chr4 15638054 15638359 -186689988 - AluSx SINE Alu -19 293 1 394 262 133 119 chr4 15643003 15643487 -186684860 + L1M2 LINE L1 574 1050 -5799 216 0 0 0 chr4 15643487 15643511 -186684836 + (CCG)n Simple_repeat Simple_repeat 2 25 0 394 262 133 119 chr4 15643511 15643563 -186684784 + L1M2 LINE L1 1050 1100 -5749 195 42 0 0 chr4 15643563 15643587 -186684760 + (CCG)n Simple_repeat Simple_repeat 2 25 0 394 262 133 119 chr4 15643587 15643825 -186684522 + L1M2 LINE L1 1100 1360 -5489 28 0 0 0 chr4 15643922 15643950 -186684397 + GC_rich Low_complexity Low_complexity 1 28 0 2398 73 0 16 chr4 15645314 15645629 -186682718 + AluSg SINE Alu 1 310 0 2151 105 0 16 chr4 15645954 15646269 -186682078 + AluSg SINE Alu 1 310 0 267 31 0 0 chr4 15646295 15646327 -186682020 + (A)n Simple_repeat Simple_repeat 1 32 0 198 301 34 62 chr4 15647618 15647764 -186680583 + MIR SINE MIR 4 145 -117 242 241 145 62 chr4 15647982 15648127 -186680220 + MIR3 SINE MIR 37 193 -15 209 0 98 0 chr4 15650890 15650931 -186677416 + (TAATG)n Simple_repeat Simple_repeat 1 45 0 204 256 275 25 chr4 15651451 15651611 -186676736 + MIR3 SINE MIR 2 201 -7 241 370 84 33 chr4 15651758 15652117 -186676230 - L2 LINE L2 -6 3266 2890 381 240 190 0 chr4 15653567 15653688 -186674659 + MIR SINE MIR 51 194 -68 235 323 55 92 chr4 15653690 15653854 -186674493 - L2 LINE L2 0 3272 3115 249 325 86 60 chr4 15654094 15654491 -186673856 - L2 LINE L2 -584 2730 2324 372 262 271 21 chr4 15655163 15655499 -186672848 - L2 LINE L2 -985 2329 1910 251 371 57 0 chr4 15656345 15656450 -186671897 - L2 LINE L2 -20 3252 3142 2557 106 19 33 chr4 15658389 15658757 -186669590 + THE1B LTR MaLR 1 363 -1 304 159 48 0 chr4 15658811 15658874 -186669473 - L1MC4a LINE L1 -1781 6027 5962 325 0 44 0 chr4 15658874 15658919 -186669428 + (TA)n Simple_repeat Simple_repeat 2 48 0 883 250 37 16 chr4 15659148 15659392 -186668955 - L1MC4a LINE L1 -1883 5925 5677 273 326 20 10 chr4 15660550 15660730 -186667617 + MER93b-int LTR ERV1 6579 6655 -146 453 220 34 14 chr4 15661063 15661205 -186667142 + MER93b LTR ERV1 61 214 -188 1211 180 3 95 chr4 15661222 15661516 -186666831 - AluJo SINE Alu -16 296 30 744 189 31 19 chr4 15661520 15661679 -186666668 + MER93a LTR ERV1 242 402 0 1671 172 31 3 chr4 15661809 15662099 -186666248 - AluJb SINE Alu -14 298 1 3373 85 21 7 chr4 15662533 15662970 -186665377 - MLT2A1 LTR ERVL -1 443 1 577 290 70 14 chr4 15663281 15663495 -186664852 + MIR SINE MIR 37 262 0 211 292 67 50 chr4 15663737 15663857 -186664490 + L2 LINE L2 2943 3064 -208 2267 107 0 0 chr4 15664264 15664590 -186663757 - AluSx SINE Alu 0 326 1 968 230 64 55 chr4 15664914 15665275 -186663072 - LTR16A1 LTR ERVL 0 457 94 280 361 161 4 chr4 15667348 15667578 -186660769 - L2 LINE L2 -562 2752 2487 245 363 50 61 chr4 15668601 15668853 -186659494 + L2 LINE L2 1851 2099 -1215 2561 59 0 0 chr4 15668853 15669157 -186659190 - AluY SINE Alu -7 304 1 245 363 50 61 chr4 15669157 15669281 -186659066 + L2 LINE L2 2099 2223 -1091 209 169 13 52 chr4 15669459 15669536 -186658811 + (CATATA)n Simple_repeat Simple_repeat 1 74 0 230 315 22 22 chr4 15669557 15669649 -186658698 + MER5B DNA MER1_type 57 148 -30 698 140 9 0 chr4 15669661 15669768 -186658579 - L1PB1 LINE L1 -5 6146 6039 411 372 36 65 chr4 15669817 15670294 -186658053 + L2 LINE L2 2777 3243 -29 1418 305 143 11 chr4 15670401 15671329 -186657018 + L2 LINE L2 2232 3311 -2 2033 120 0 33 chr4 15672445 15672769 -186655578 - AluSq SINE Alu 0 313 1 26 0 0 0 chr4 15673137 15673163 -186655184 + AT_rich Low_complexity Low_complexity 1 26 0 2083 156 140 8 chr4 15673179 15673557 -186654790 - MSTA LTR MaLR 0 428 1 2890 229 25 21 chr4 15674419 15675452 -186652895 - L1PA15-16 LINE L1 -3117 3732 2694 2133 169 0 3 chr4 15675471 15675808 -186652539 + MER75 DNA T2_type 6 341 -173 25 0 0 0 chr4 15676106 15676131 -186652216 + AT_rich Low_complexity Low_complexity 1 25 0 238 364 93 0 chr4 15677288 15677428 -186650919 + MIR SINE MIR 108 260 -2 489 363 28 4 chr4 15677445 15677696 -186650651 - MIR SINE MIR 0 262 6 370 302 251 15 chr4 15679760 15680091 -186648256 - MLT1I LTR MaLR 0 409 1 30 45 0 0 chr4 15680108 15680152 -186648195 + AT_rich Low_complexity Low_complexity 1 44 0 1683 246 197 3 chr4 15680783 15681347 -186647000 - L1M3e LINE L1 -5297 1733 1061 31 26 0 0 chr4 15681810 15681848 -186646499 + AT_rich Low_complexity Low_complexity 1 38 0 1898 192 97 8 chr4 15682299 15682690 -186645657 - MSTA LTR MaLR 0 428 3 2362 191 62 42 chr4 15682692 15683211 -186645136 - MSTA-int LTR MaLR 0 1651 1123 1148 50 0 0 chr4 15683558 15683697 -186644650 + MER85 DNA T2_type 1 139 0 219 195 274 71 chr4 15684906 15684985 -186643362 + MIR SINE MIR 117 179 -83 996 173 85 122 chr4 15684985 15685361 -186642986 - MLT1A1 LTR MaLR 0 365 4 219 195 274 71 chr4 15685361 15685394 -186642953 + MIR SINE MIR 179 252 -10 32 43 0 0 chr4 15685617 15685663 -186642684 + AT_rich Low_complexity Low_complexity 1 46 0 187 262 66 16 chr4 15685998 15686059 -186642288 - MIR SINE MIR -72 190 127 5964 108 3 21 chr4 15686501 15686985 -186641362 - THE1-int LTR MaLR -737 843 379 1763 135 0 4 chr4 15686985 15687237 -186641110 + AluSc SINE Alu 50 300 -9 5964 108 3 21 chr4 15687237 15687606 -186640741 - THE1-int LTR MaLR -1201 379 5 2127 107 72 9 chr4 15687609 15687928 -186640419 - MLT2A2 LTR ERVL -5 448 110 392 288 22 84 chr4 15688269 15688495 -186639852 + MIR SINE MIR 30 241 -21 1774 214 80 78 chr4 15689819 15690272 -186638075 - L1MC/D LINE L1 -743 5403 4953 1851 179 0 10 chr4 15690272 15690585 -186637762 + AluJb SINE Alu 3 312 0 1774 214 80 78 chr4 15690585 15691293 -186637054 - L1MC/D LINE L1 -1193 4953 4404 2214 96 6 13 chr4 15691425 15691738 -186636609 + AluY SINE Alu 1 311 0 1005 142 25 0 chr4 15693137 15693299 -186635048 + L1M1 LINE L1 22 187 -7378 332 320 118 55 chr4 15693477 15693858 -186634489 + L2 LINE L2 2898 3302 -11 282 361 83 25 chr4 15693947 15694271 -186634076 + L2 LINE L2 1072 1414 -1900 238 258 62 102 chr4 15694742 15694870 -186633477 - MIR3 SINE MIR -24 184 62 448 164 0 14 chr4 15694932 15695005 -186633342 - FRAM/FAM SINE Alu -110 66 1 7913 67 3 9 chr4 15695255 15696230 -186632117 + LTR5 LTR ERVK 1 969 0 238 329 0 0 chr4 15696794 15696873 -186631474 + L2 LINE L2 3184 3262 -10 2704 187 29 9 chr4 15698274 15699781 -186628566 - L1M1 LINE L1 -5910 1655 16 310 198 74 0 chr4 15699793 15699874 -186628473 - LTR37B LTR ERV1 -184 284 198 305 227 280 67 chr4 15700286 15700436 -186627911 - MIR SINE MIR 0 262 81 257 310 78 7 chr4 15700450 15700592 -186627755 + L2 LINE L2 3162 3313 0 188 188 42 0 chr4 15701922 15701970 -186626377 + CT-rich Low_complexity Low_complexity 2 51 0 216 292 106 9 chr4 15702249 15702362 -186625985 - MIR SINE MIR -66 142 19 428 283 116 5 chr4 15702843 15703041 -186625306 + MIR SINE MIR 36 255 -7 659 160 8 0 chr4 15703077 15703196 -186625151 - L1MA3 LINE L1 -5 6300 6181 9999 146 18 5 chr4 15703196 15705363 -186622984 - L1 LINE L1 -3317 4248 2049 3909 256 80 62 chr4 15705365 15706490 -186621857 - L1 LINE L1 -6410 1155 11 297 264 118 27 chr4 15706529 15706639 -186621708 - MIR SINE MIR -89 173 54 1502 131 278 18 chr4 15706814 15707149 -186621198 - MSTA LTR MaLR -2 426 5 209 283 0 33 chr4 15707373 15707433 -186620914 - L2 LINE L2 -4 3268 3211 324 64 0 0 chr4 15707781 15707828 -186620519 + (TTTTG)n Simple_repeat Simple_repeat 2 48 0 183 80 0 0 chr4 15708774 15708799 -186619548 + (TGGGGG)n Simple_repeat Simple_repeat 1 25 0 288 263 26 0 chr4 15709476 15709552 -186618795 - MER116 DNA Mariner 0 80 3 2628 37 16 0 chr4 15710187 15710510 -186617837 - L1P LINE L1 -924 5222 4895 1790 55 0 0 chr4 15710510 15710723 -186617624 + L1PA5 LINE L1 5928 6147 -7 303 93 0 0 chr4 15710723 15710766 -186617581 + (TA)n Simple_repeat Simple_repeat 2 44 0 377 180 205 16 chr4 15711319 15711441 -186616906 + MIR SINE MIR 112 256 -6 1794 91 8 0 chr4 15713478 15713732 -186614615 - L1MA2 LINE L1 -1 6303 6048 1446 207 18 84 chr4 15714751 15715142 -186613205 - MLT1A2 LTR MaLR 0 374 10 193 344 10 10 chr4 15715516 15715612 -186612735 + MIR SINE MIR 48 143 -119 569 163 155 72 chr4 15715994 15716277 -186612070 + LTR54B LTR ERV1 1 300 -210 599 179 0 17 chr4 15716278 15716395 -186611952 + MER57A-int LTR ERV1 7412 7526 -11 2048 165 29 63 chr4 15716440 15716853 -186611494 + MER57A LTR ERV1 5 403 0 215 216 72 82 chr4 15716884 15716981 -186611366 - MIR SINE MIR -99 163 68 2246 125 0 6 chr4 15717307 15717620 -186610727 - AluSx SINE Alu 0 312 2 2682 163 24 24 chr4 15717856 15718359 -186609988 - LTR54 LTR ERV1 -5 505 3 534 219 73 0 chr4 15719102 15719239 -186609108 - MIR SINE MIR -85 177 31 193 300 42 50 chr4 15719236 15719356 -186608991 - MIR SINE MIR -97 165 47 * 624 268 38 38 chr4 15720039 15720252 -186608095 + MIR SINE MIR 29 241 -21 1328 239 104 19 chr4 15720361 15720783 -186607564 - MLT1C LTR MaLR -2 465 8 218 337 24 0 chr4 15720831 15720914 -186607433 - MIR SINE MIR -144 118 34 250 317 114 0 chr4 15721120 15721243 -186607104 - L2 LINE L2 -189 3083 2947 506 163 0 20 chr4 15721559 15721657 -186606690 + MER5A DNA MER1_type 11 106 -83 1911 108 0 0 chr4 15721657 15721931 -186606416 - AluSq SINE Alu 0 306 33 30 0 0 0 chr4 15721944 15721974 -186606373 + AT_rich Low_complexity Low_complexity 1 30 0 2011 222 92 25 chr4 15721974 15722541 -186605806 - L1ME3A LINE L1 -12 6158 5554 1844 218 67 82 chr4 15722561 15722970 -186605377 - L1MC5 LINE L1 -44 7917 7522 2079 118 7 0 chr4 15722970 15723258 -186605089 - AluSx SINE Alu -22 290 1 1844 218 67 82 chr4 15723258 15723596 -186604751 - L1MC5 LINE L1 -439 7522 7181 285 212 45 0 chr4 15723665 15723731 -186604616 - L1ME4a LINE L1 -209 5912 5844 1807 176 143 14 chr4 15724201 15724383 -186603964 + MLT1C LTR MaLR 1 158 -309 2542 52 3 3 chr4 15724383 15724690 -186603657 + AluY SINE Alu 1 307 -4 1807 176 143 14 chr4 15724690 15724921 -186603426 + MLT1C LTR MaLR 158 467 0 186 228 193 0 chr4 15725895 15725952 -186602395 - L2 LINE L2 0 3313 3246 1627 114 4 21 chr4 15726027 15726264 -186602083 + AluJb SINE Alu 67 299 -13 476 267 136 100 chr4 15726389 15726896 -186601451 - L1MC4a LINE L1 -1675 6133 5601 1644 152 4 4 chr4 15726896 15727153 -186601194 - AluJo SINE Alu -55 257 1 476 267 136 100 chr4 15727153 15727226 -186601121 - L1MC4a LINE L1 -2207 5601 5532 409 277 8 23 chr4 15727275 15727405 -186600942 - MIR SINE MIR -115 147 20 402 289 114 9 chr4 15727736 15727909 -186600438 - L1MC4a LINE L1 -3006 3140 2936 1832 128 4 0 chr4 15727909 15728167 -186600180 - AluSx SINE Alu -11 301 43 402 289 114 9 chr4 15728167 15728221 -186600126 - L1MC4a LINE L1 -3210 2936 2889 491 219 19 1 chr4 15730069 15730186 -186598161 - MIR SINE MIR -61 147 38 597 216 22 30 chr4 15730186 15730320 -186598027 + MER94 DNA DNA 1 133 -1 2027 144 3 0 chr4 15730587 15730885 -186597462 - AluSx SINE Alu -13 299 1 525 207 212 43 chr4 15731116 15731343 -186597004 - L1MC4a LINE L1 -400 7460 7174 1868 166 0 13 chr4 15731343 15731645 -186596702 + AluJb SINE Alu 2 299 -13 525 207 212 43 chr4 15731645 15731718 -186596629 - L1MC4a LINE L1 -686 7174 7115 435 222 10 0 chr4 15732731 15732832 -186595515 - MIR SINE MIR -68 140 34 411 351 75 41 chr4 15732838 15733225 -186595122 + L2 LINE L2 2824 3223 -49 2344 108 12 122 chr4 15733293 15733467 -186594880 + HSMAR2 DNA Mariner 2 193 -1109 1866 168 0 7 chr4 15733467 15733765 -186594582 + AluJb SINE Alu 1 296 -16 2344 108 12 122 chr4 15733765 15733851 -186594496 + HSMAR2 DNA Mariner 193 287 -1015 2362 72 7 0 chr4 15733851 15734142 -186594205 - AluSg SINE Alu -17 293 1 2344 108 12 122 chr4 15734142 15734363 -186593984 + HSMAR2 DNA Mariner 287 431 -871 28 61 0 0 chr4 15734363 15734412 -186593935 + AT_rich Low_complexity Low_complexity 1 49 0 32 43 0 0 chr4 15734636 15734682 -186593665 + AT_rich Low_complexity Low_complexity 1 46 0 429 213 11 11 chr4 15736434 15736528 -186591819 + MLT2C1 LTR ERVL 29 122 -275 2050 129 14 14 chr4 15736619 15736913 -186591434 + AluSx SINE Alu 2 295 -17 1388 139 52 36 chr4 15736918 15737170 -186591177 + MLT2C1 LTR ERVL 142 397 0 922 301 86 10 chr4 15738592 15738978 -186589369 - MLT1J2 LTR MaLR 0 450 36 194 265 0 0 chr4 15739113 15739147 -186589200 - L2 LINE L2 -29 3243 3210 870 154 122 0 chr4 15740657 15740813 -186587534 + FRAM SINE Alu 1 172 -4 3883 173 45 48 chr4 15740956 15741531 -186586816 - Charlie1a DNA MER1_type -1326 1435 863 868 231 0 0 chr4 15741531 15741691 -186586656 - L1PB4 LINE L1 -7 6149 5990 3883 173 45 48 chr4 15741691 15742008 -186586339 - Charlie1a DNA MER1_type -1898 863 546 1261 179 4 45 chr4 15742010 15742256 -186586091 + AluJo SINE Alu 1 236 -76 227 214 0 0 chr4 15742274 15742316 -186586031 - Charlie1a DNA MER1_type -918 537 496 198 0 0 0 chr4 15742316 15742338 -186586009 + (TA)n Simple_repeat Simple_repeat 2 23 0 943 198 153 36 chr4 15742439 15742687 -186585660 - AluJo SINE Alu -35 277 1 1812 221 119 7 chr4 15742695 15743142 -186585205 - Charlie1a DNA MER1_type -958 497 1 204 81 0 54 chr4 15743246 15743283 -186585064 + (TTTTTG)n Simple_repeat Simple_repeat 3 37 0 255 303 154 53 chr4 15743395 15743583 -186584764 - MIR SINE MIR 0 262 56 1934 112 0 0 chr4 15744468 15744726 -186583621 - AluSx SINE Alu -54 258 1 2217 96 0 0 chr4 15745481 15745789 -186582558 + AluSg SINE Alu 1 308 0 318 250 0 0 chr4 15745983 15746055 -186582292 - L1M4 LINE L1 -2461 3685 3614 2222 85 4 0 chr4 15746161 15746468 -186581879 + AluY SINE Alu 1 308 0 376 181 60 0 chr4 15748104 15748187 -186580160 - LTR16C LTR ERVL 0 491 404 187 289 21 62 chr4 15748187 15748284 -186580063 + MER5A DNA MER1_type 69 161 -28 205 311 14 14 chr4 15748645 15748719 -186579628 - L2 LINE L2 -555 2759 2686 289 308 0 56 chr4 15749886 15750029 -186578318 - MIR SINE MIR -5 257 123 250 295 47 39 chr4 15750431 15750560 -186577787 - MIR SINE MIR -11 251 122 226 264 14 0 chr4 15750921 15750993 -186577354 - LTR66 LTR ERVL -159 451 379 1730 98 150 11 chr4 15751013 15751279 -186577068 + AluSg1 SINE Alu 1 303 -6 233 233 11 0 chr4 15753178 15753268 -186575079 + CT-rich Low_complexity Low_complexity 2 92 0 2178 118 0 0 chr4 15753801 15754098 -186574249 - AluSx SINE Alu -15 297 1 466 252 25 0 chr4 15756409 15756528 -186571819 + Charlie8 DNA MER1_type 46 167 -2250 763 216 0 8 chr4 15756758 15756892 -186571455 - FLAM_A SINE Alu 0 133 1 243 0 0 0 chr4 15757602 15757629 -186570718 + (TG)n Simple_repeat Simple_repeat 2 28 0 313 393 22 7 chr4 15757947 15758082 -186570265 - MIR3 SINE MIR -48 160 24 355 229 101 9 chr4 15758915 15759024 -186569323 - L1ME3A LINE L1 -171 5999 5881 285 29 0 0 chr4 15759186 15759220 -186569127 + (TG)n Simple_repeat Simple_repeat 2 35 0 279 140 0 0 chr4 15760199 15760249 -186568098 + (CA)n Simple_repeat Simple_repeat 1 50 0 610 182 55 79 chr4 15761037 15761202 -186567145 + MER20 DNA MER1_type 2 162 -57 1017 193 11 21 chr4 15761833 15762020 -186566327 + MER58A DNA MER1_type 37 221 -3 216 273 18 0 chr4 15762634 15762689 -186565658 - MIR SINE MIR -55 153 98 514 189 8 8 chr4 15762744 15762866 -186565481 + CT-rich Low_complexity Low_complexity 3 124 0 647 152 203 19 chr4 15762922 15763080 -186565267 - MLT1B LTR MaLR -203 187 1 190 237 85 34 chr4 15763096 15763155 -186565192 - MIR SINE MIR -187 75 14 268 274 78 10 chr4 15764892 15764994 -186563353 - MIR SINE MIR -58 150 42 243 0 0 0 chr4 15765028 15765055 -186563292 + (TG)n Simple_repeat Simple_repeat 2 28 0 447 161 0 54 chr4 15765393 15765486 -186562861 - Tigger5 DNA MER2_type -1 2322 2235 * 1237 180 48 26 chr4 15765479 15765707 -186562640 - Tigger5 DNA MER2_type -2090 233 1 452 279 57 8 chr4 15765832 15765954 -186562393 - MIR SINE MIR -128 134 7 21 0 0 0 chr4 15766900 15766921 -186561426 + AT_rich Low_complexity Low_complexity 1 21 0 2198 110 0 3 chr4 15767095 15767386 -186560961 - AluSx SINE Alu -20 292 3 1592 213 74 98 chr4 15767581 15768256 -186560091 - L1MC4 LINE L1 0 8042 7384 280 308 72 117 chr4 15769075 15769211 -186559136 + L2 LINE L2 2852 2992 -280 2047 130 0 0 chr4 15769211 15769519 -186558828 - AluSx SINE Alu 0 308 1 280 308 72 117 chr4 15769519 15769551 -186558796 + L2 LINE L2 2992 3024 -248 2409 103 0 0 chr4 15769551 15769863 -186558484 - AluSx SINE Alu 0 312 1 280 308 72 117 chr4 15769863 15770078 -186558269 + L2 LINE L2 3024 3220 -52 829 110 87 0 chr4 15770242 15770369 -186557978 - MER85 DNA T2_type 0 139 2 290 262 9 93 chr4 15770428 15770535 -186557812 + MIR3 SINE MIR 90 187 -21 857 211 77 29 chr4 15771076 15771285 -186557062 - MER20 DNA MER1_type 0 219 1 2605 61 0 3 chr4 15772028 15772338 -186556009 - AluY SINE Alu -2 309 1 2268 93 33 0 chr4 15772630 15772932 -186555415 + AluSx SINE Alu 1 312 0 239 143 102 0 chr4 15773528 15773577 -186554770 - L2 LINE L2 -12 3301 3248 1710 125 61 51 chr4 15774126 15774421 -186553926 + AluJb SINE Alu 1 298 -14 2121 110 30 13 chr4 15774969 15775269 -186553078 - AluSx SINE Alu -7 305 1 23 0 0 0 chr4 15775293 15775316 -186553031 + AT_rich Low_complexity Low_complexity 1 23 0 426 291 155 24 chr4 15775328 15775541 -186552806 + MIR SINE MIR 19 259 -3 621 147 0 78 chr4 15776139 15776255 -186552092 + U6 snRNA snRNA 1 107 0 449 322 101 0 chr4 15776822 15777021 -186551326 - MIR SINE MIR -8 254 36 237 65 0 0 chr4 15778725 15778756 -186549591 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 423 0 0 0 chr4 15779384 15779431 -186548916 + (CA)n Simple_repeat Simple_repeat 1 47 0 2237 104 7 3 chr4 15779666 15779963 -186548384 + AluSx SINE Alu 3 300 -12 534 208 20 7 chr4 15779972 15780121 -186548226 + GA-rich Low_complexity Low_complexity 4 154 0 355 64 0 0 chr4 15780249 15780296 -186548051 + MADE1 DNA Mariner 1 47 -33 757 181 16 0 chr4 15781131 15781258 -186547089 - FLAM_C SINE Alu -4 129 1 604 324 8 19 chr4 15781486 15781745 -186546602 + L1ME LINE L1 5563 5818 -303 448 248 0 58 chr4 15781848 15781969 -186546378 - MER58C DNA MER1_type 0 215 102 746 308 173 45 chr4 15782543 15783974 -186544373 + L2 LINE L2 1146 2759 -555 2376 61 0 0 chr4 15785441 15785737 -186542610 - AluY SINE Alu -15 296 1 1827 109 13 60 chr4 15785902 15786204 -186542143 + AluSx SINE Alu 6 293 -19 21 0 0 0 chr4 15786362 15786383 -186541964 + AT_rich Low_complexity Low_complexity 1 21 0 293 273 171 11 chr4 15786946 15787133 -186541214 + MIR SINE MIR 32 248 -14 1913 140 3 16 chr4 15787162 15787470 -186540877 + AluSx SINE Alu 1 304 -8 277 163 0 25 chr4 15787597 15787677 -186540670 + (TA)n Simple_repeat Simple_repeat 2 79 0 297 0 0 0 chr4 15788381 15788414 -186539933 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 2124 96 3 0 chr4 15788416 15788698 -186539649 - AluSx SINE Alu -29 283 1 263 297 58 43 chr4 15788787 15788925 -186539422 - MIR SINE MIR -22 240 101 260 339 60 48 chr4 15789115 15789283 -186539064 - L2 LINE L2 -182 3090 2921 723 185 0 0 chr4 15789485 15789631 -186538716 + CT-rich Low_complexity Low_complexity 1 146 0 270 310 62 0 chr4 15789764 15789877 -186538470 - MER117 DNA MER1_type -37 160 41 483 188 116 0 chr4 15791014 15791126 -186537221 - L1MB5 LINE L1 -6 6168 6044 30 27 0 0 chr4 15792290 15792327 -186536020 + AT_rich Low_complexity Low_complexity 1 37 0 861 133 0 23 chr4 15792327 15792455 -186535892 - FLAM_C SINE Alu -7 126 2 1378 186 60 70 chr4 15792755 15792965 -186535382 - L1MB5 LINE L1 0 6174 5968 2388 68 0 10 chr4 15792965 15793274 -186535073 - AluSc SINE Alu -3 306 1 1378 186 60 70 chr4 15793274 15793460 -186534887 - L1MB5 LINE L1 -206 5968 5782 1071 213 117 46 chr4 15793944 15794268 -186534079 - MER66A LTR ERV1 -105 373 27 611 257 143 0 chr4 15794581 15794756 -186533591 + MIR SINE MIR 2 201 -61 234 288 12 38 chr4 15794779 15794859 -186533488 + MIR SINE MIR 106 183 -79 191 218 204 35 chr4 15795701 15795813 -186532534 + MIR SINE MIR 19 152 -110 998 219 54 5 chr4 15796350 15796555 -186531792 + MER58A DNA MER1_type 10 224 0 2531 46 0 0 chr4 15796751 15797053 -186531294 + AluY SINE Alu 1 302 -9 485 265 98 40 chr4 15797541 15797861 -186530486 - MLT1I LTR MaLR -20 389 82 325 316 103 6 chr4 15798283 15798457 -186529890 + MER91A DNA MER1_type 1 191 -5 203 291 22 90 chr4 15798575 15798709 -186529638 + MIR SINE MIR 119 243 -19 234 242 81 71 chr4 15799470 15799569 -186528778 - MIR SINE MIR -68 194 95 1921 139 71 6 chr4 15799582 15799905 -186528442 + MER2 DNA MER2_type 1 344 0 3079 126 93 22 chr4 15799962 15800454 -186527893 - MER1A DNA MER1_type 0 527 1 407 325 49 21 chr4 15801129 15801372 -186526975 + L2 LINE L2 2715 2964 -350 255 294 305 5 chr4 15801468 15801665 -186526682 + MIR SINE MIR 7 262 0 374 299 106 53 chr4 15801671 15801935 -186526412 + L2 LINE L2 3003 3280 -33 459 247 88 53 chr4 15802937 15803164 -186525183 - Charlie8 DNA MER1_type -2152 265 31 2217 95 0 10 chr4 15803334 15803638 -186524709 - AluSg SINE Alu -9 301 1 2210 78 0 0 chr4 15803666 15803980 -186524367 + AluY SINE Alu 1 314 0 390 225 295 35 chr4 15804069 15804242 -186524105 + MIR SINE MIR 14 231 -31 216 0 0 0 chr4 15804296 15804320 -186524027 + (A)n Simple_repeat Simple_repeat 1 24 0 26 0 0 0 chr4 15804974 15805000 -186523347 + AT_rich Low_complexity Low_complexity 1 26 0 244 159 0 0 chr4 15805206 15805250 -186523097 + L2 LINE L2 3269 3312 -1 579 66 0 0 chr4 15805873 15805949 -186522398 + (TTCC)n Simple_repeat Simple_repeat 1 76 0 1297 225 117 9 chr4 15806670 15806995 -186521352 - MLT1A1 LTR MaLR -3 362 3 2130 108 0 0 chr4 15807029 15807326 -186521021 + AluY SINE Alu 1 297 -14 258 303 67 0 chr4 15808043 15808132 -186520215 - LTR16A LTR ERVL -346 104 10 341 235 69 115 chr4 15809277 15809408 -186518939 + MIR SINE MIR 33 152 -110 2218 91 0 3 chr4 15809408 15809705 -186518642 + AluSg SINE Alu 1 296 -14 341 235 69 115 chr4 15809705 15809765 -186518582 + MIR SINE MIR 152 213 -49 832 143 0 0 chr4 15810164 15810290 -186518057 + FLAM_C SINE Alu 9 134 -9 303 28 0 0 chr4 15810783 15810819 -186517528 + (GA)n Simple_repeat Simple_repeat 2 37 0 273 75 0 0 chr4 15810818 15810858 -186517489 + (TG)n Simple_repeat Simple_repeat 2 41 0 * 191 250 146 21 chr4 15811056 15811152 -186517195 - MIR SINE MIR -67 141 34 383 250 100 7 chr4 15811265 15811405 -186516942 - Charlie8 DNA MER1_type -2228 189 37 1624 160 50 4 chr4 15811467 15811748 -186516599 - AluSx SINE Alu -18 294 1 305 290 93 55 chr4 15811979 15812162 -186516185 + MER117 DNA MER1_type 7 196 -1 1476 208 98 16 chr4 15812314 15812680 -186515667 + MSTD LTR MaLR 1 396 0 773 194 85 18 chr4 15814027 15814286 -186514061 - MER2 DNA MER2_type 0 345 1 241 274 0 0 chr4 15814316 15814378 -186513969 + (TA)n Simple_repeat Simple_repeat 1 62 0 33 66 0 0 chr4 15814393 15814454 -186513893 + AT_rich Low_complexity Low_complexity 1 61 0 2049 93 16 38 chr4 15814459 15814772 -186513575 + AluSx SINE Alu 6 311 -1 815 194 0 71 chr4 15814797 15814990 -186513357 + FAM SINE Alu 1 45 0 1921 103 40 4 chr4 15815050 15815359 -186512988 + AluSx SINE Alu 1 319 0 21 0 0 0 chr4 15817216 15817237 -186511110 + AT_rich Low_complexity Low_complexity 1 21 0 2290 85 0 0 chr4 15817243 15817538 -186510809 + AluSc SINE Alu 1 295 -14 311 302 60 7 chr4 15817595 15817744 -186510603 + L2 LINE L2 1750 1906 -1408 767 211 74 26 chr4 15818038 15818228 -186510119 - MER58A DNA MER1_type 0 224 26 513 237 35 0 chr4 15818478 15818592 -186509755 + MLT1J LTR MaLR 64 181 -330 297 324 205 0 chr4 15818860 15818903 -186509444 - L2 LINE L2 -131 3182 3149 2159 124 0 0 chr4 15818903 15819202 -186509145 + AluSx SINE Alu 1 299 -13 297 324 205 0 chr4 15819202 15819417 -186508930 - L2 LINE L2 -164 3149 2871 1898 134 17 0 chr4 15819835 15820126 -186508221 + AluSx SINE Alu 1 296 -16 1211 227 0 25 chr4 15820135 15820417 -186507930 + AluJo SINE Alu 1 275 -37 246 32 0 0 chr4 15820418 15820449 -186507898 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 22 35 0 0 chr4 15820901 15820930 -186507417 + AT_rich Low_complexity Low_complexity 1 29 0 485 229 40 51 chr4 15822670 15822845 -186505502 + MER5B DNA MER1_type 2 174 -4 333 203 68 68 chr4 15823623 15823786 -186504561 - HAL1b LINE L1 0 1348 1186 1990 163 41 46 chr4 15823869 15824261 -186504086 - MLT1B LTR MaLR 0 390 1 204 40 0 0 chr4 15824288 15824313 -186504034 + (T)n Simple_repeat Simple_repeat 1 25 0 1759 220 64 9 chr4 15824752 15825188 -186503159 - MLT1C LTR MaLR -2 465 6 2297 75 3 0 chr4 15825414 15825706 -186502641 - AluSx SINE Alu -19 293 1 694 246 11 17 chr4 15825751 15825930 -186502417 - MER5B DNA MER1_type 0 178 1 253 279 209 0 chr4 15825930 15826016 -186502331 + MER5B DNA MER1_type 74 177 -1 273 270 66 36 chr4 15826036 15826173 -186502174 - L2 LINE L2 -1 3312 3172 252 252 153 38 chr4 15826331 15826462 -186501885 - MIR SINE MIR -70 192 47 463 224 41 71 chr4 15826601 15826674 -186501673 + MER5A DNA MER1_type 3 77 -112 1936 131 0 3 chr4 15826674 15826965 -186501382 + AluSx SINE Alu 1 290 -22 463 224 41 71 chr4 15826965 15827061 -186501286 + MER5A DNA MER1_type 77 167 -22 1693 182 34 6 chr4 15827109 15827466 -186500881 + L1MB3 LINE L1 5802 6168 -15 305 256 48 0 chr4 15827495 15827620 -186500727 + L1M4 LINE L1 4888 5018 -1128 372 311 123 46 chr4 15828793 15829118 -186499229 - HERVL40 LTR ERVL -2160 3370 3021 2619 101 3 8 chr4 15829648 15830005 -186498342 + THE1A LTR MaLR 1 355 0 11712 95 12 12 chr4 15830005 15830825 -186497522 + THE1A-int LTR MaLR 1 823 -757 3001 126 11 17 chr4 15830825 15831286 -186497061 - LTR22A LTR ERVK 0 458 1 11712 95 12 12 chr4 15831286 15832045 -186496302 + THE1A-int LTR MaLR 822 1580 0 2673 102 3 0 chr4 15832045 15832399 -186495948 + THE1A LTR MaLR 1 355 0 1350 110 0 5 chr4 15832401 15832601 -186495746 + L1PB1 LINE L1 5953 6151 0 182 236 69 56 chr4 15833264 15833336 -186495011 + MIR SINE MIR 120 192 -70 751 175 0 0 chr4 15833336 15833456 -186494891 + FLAM_C SINE Alu 2 121 -22 216 97 0 0 chr4 15833456 15833487 -186494860 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1500 198 25 7 chr4 15834307 15834590 -186493757 + AluJo SINE Alu 2 289 -23 1404 178 37 11 chr4 15834590 15834882 -186493465 - AluSx SINE Alu 0 304 6 31 44 0 0 chr4 15834887 15834932 -186493415 + AT_rich Low_complexity Low_complexity 1 45 0 2097 108 10 0 chr4 15835038 15835343 -186493004 - AluSq SINE Alu -5 308 1 352 339 128 11 chr4 15835358 15835538 -186492809 + MIR SINE MIR 6 206 -56 1314 251 85 27 chr4 15836144 15836590 -186491757 + MER74B LTR ERVL 58 529 -93 1303 224 101 7 chr4 15836592 15836900 -186491447 + MER2 DNA MER2_type 1 337 -8 813 272 51 0 chr4 15837822 15838017 -186490330 + HERVL74 LTR ERVL 2473 2677 -3008 662 220 8 0 chr4 15838014 15838146 -186490201 + HERVL74 LTR ERVL 3208 3340 -2345 * 519 216 9 0 chr4 15838137 15838248 -186490099 + HERVL74 LTR ERVL 3488 3599 -2086 * 253 83 0 0 chr4 15838296 15838332 -186490015 + HERVL74 LTR ERVL 3940 3975 -1710 1189 217 114 69 chr4 15838334 15838754 -186489593 + MSTB2 LTR MaLR 17 455 -2 542 202 0 0 chr4 15838759 15838853 -186489494 + HERVL74 LTR ERVL 3980 4073 -1612 328 266 86 55 chr4 15839306 15839434 -186488913 + L2 LINE L2 3140 3271 -1 215 303 0 11 chr4 15840016 15840105 -186488242 + (TG)n Simple_repeat Simple_repeat 1 88 0 299 188 0 16 chr4 15840356 15840420 -186487927 + MER116 DNA Mariner 18 80 0 3070 128 11 68 chr4 15840502 15840835 -186487512 + L1PA16 LINE L1 5629 5919 -247 2042 130 0 0 chr4 15840835 15841136 -186487211 + AluSg SINE Alu 1 301 -9 3070 128 11 68 chr4 15841136 15841365 -186486982 + L1PA16 LINE L1 5919 6159 -7 1760 80 34 42 chr4 15841568 15841832 -186486515 - AluY SINE Alu -16 295 34 894 200 43 9 chr4 15842351 15842561 -186485786 + L1MC3 LINE L1 7357 7573 -212 * 2660 185 22 72 chr4 15842560 15843306 -186485041 + L1MC1 LINE L1 5656 6326 -7 207 0 0 0 chr4 15843307 15843330 -186485017 + (TAA)n Simple_repeat Simple_repeat 2 24 0 778 175 88 16 chr4 15843335 15843529 -186484818 + L1MC3 LINE L1 7563 7770 -15 242 347 12 24 chr4 15844071 15844238 -186484109 - L2 LINE L2 -236 3036 2872 255 114 0 0 chr4 15844243 15844287 -186484060 + (TG)n Simple_repeat Simple_repeat 2 45 0 483 186 6 22 chr4 15844308 15844491 -186483856 + (TG)n Simple_repeat Simple_repeat 1 180 0 488 235 111 92 chr4 15845113 15845330 -186483017 + Charlie8 DNA MER1_type 45 265 -2152 193 333 81 16 chr4 15845639 15845762 -186482585 - MIR SINE MIR -93 169 39 181 111 0 0 chr4 15846019 15846046 -186482301 - L2 LINE L2 -2 3311 3285 * 259 364 21 21 chr4 15846044 15846187 -186482160 + MIR3 SINE MIR 6 148 -60 258 342 43 34 chr4 15847114 15847231 -186481116 + MIR3 SINE MIR 6 123 -85 365 309 0 0 chr4 15847899 15847993 -186480354 + L2 LINE L2 3179 3272 0 279 306 60 30 chr4 15849532 15849666 -186478681 - MIR SINE MIR -96 166 29 677 306 122 28 chr4 15850477 15850830 -186477517 - L2 LINE L2 0 3313 2928 307 280 76 45 chr4 15850841 15850973 -186477374 - L2 LINE L2 0 3313 3178 189 348 32 39 chr4 15851443 15851598 -186476749 + MIR SINE MIR 93 246 -16 509 283 95 3 chr4 15851727 15851948 -186476399 - MIR SINE MIR -6 256 18 2270 105 0 0 chr4 15852219 15852532 -186475815 - AluSq SINE Alu 0 313 1 2445 127 11 8 chr4 15853170 15853533 -186474814 + THE1B LTR MaLR 1 364 0 376 343 10 0 chr4 15853548 15853647 -186474700 + L2 LINE L2 3172 3271 -1 303 299 93 0 chr4 15854269 15854366 -186473981 + L2 LINE L2 3147 3252 -20 822 249 24 0 chr4 15854382 15854595 -186473752 - MER20 DNA MER1_type -1 218 1 418 228 228 65 chr4 15855413 15855451 -186472896 - MIR SINE MIR -5 257 227 760 211 35 0 chr4 15855451 15855622 -186472725 + MER5B DNA MER1_type 1 177 -1 418 228 228 65 chr4 15855622 15855798 -186472549 - MIR SINE MIR -35 227 8 304 318 32 37 chr4 15855837 15856064 -186472283 + MIR SINE MIR 36 262 0 2128 110 0 10 chr4 15856142 15856442 -186471905 + AluSx SINE Alu 1 297 -15 2096 109 0 0 chr4 15856904 15857198 -186471149 + AluY SINE Alu 1 294 -17 189 107 0 0 chr4 15857206 15857234 -186471113 + (GGAA)n Simple_repeat Simple_repeat 2 29 0 234 281 34 34 chr4 15857518 15857607 -186470740 - L1MC/D LINE L1 -2017 5791 5703 1942 127 0 13 chr4 15857696 15857996 -186470351 - AluJo SINE Alu -16 296 1 809 229 22 27 chr4 15858005 15858228 -186470119 - L1MC5 LINE L1 -36 7925 7704 466 281 16 8 chr4 15858229 15858357 -186469990 - L1MC/D LINE L1 -503 5618 5490 481 240 168 89 chr4 15858394 15858442 -186469905 - LTR33A LTR ERVL -24 499 456 1952 129 10 6 chr4 15858442 15858753 -186469594 + AluSq SINE Alu 1 312 -1 481 240 168 89 chr4 15858753 15859108 -186469239 - LTR33A LTR ERVL -67 456 64 307 297 61 135 chr4 15859293 15859397 -186468950 + L1MC/D LINE L1 5502 5581 -2227 1792 145 0 23 chr4 15859397 15859700 -186468647 + AluJo SINE Alu 1 296 -16 307 297 61 135 chr4 15859700 15859824 -186468523 + L1MC/D LINE L1 5581 5713 -2095 303 357 79 0 chr4 15860013 15860139 -186468208 - MIR SINE MIR -11 251 116 235 298 121 42 chr4 15860249 15860464 -186467883 - L2 LINE L2 -199 3073 2842 1040 292 62 40 chr4 15860474 15860974 -186467373 - LTR33 LTR ERVL -10 511 1 355 328 77 84 chr4 15861017 15861391 -186466956 - L2 LINE L2 -564 2750 2375 1585 187 0 13 chr4 15861391 15861512 -186466835 + AluJb SINE Alu 1 122 -190 279 0 0 0 chr4 15861512 15861543 -186466804 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 225 0 0 0 chr4 15861551 15861576 -186466771 + (CA)n Simple_repeat Simple_repeat 2 26 0 1585 187 0 13 chr4 15861576 15861760 -186466587 + AluJb SINE Alu 129 311 -1 355 328 77 84 chr4 15861760 15861956 -186466391 - L2 LINE L2 -939 2375 2179 2160 110 0 0 chr4 15861956 15862256 -186466091 + AluSq SINE Alu 1 300 -13 355 328 77 84 chr4 15862256 15862502 -186465845 - L2 LINE L2 -1135 2179 1939 585 134 21 10 chr4 15862520 15862617 -186465730 + MER4A LTR ERV1 1 98 -566 1800 147 3 27 chr4 15862617 15862971 -186465376 + MER4A LTR ERV1 261 664 0 1703 198 121 18 chr4 15864314 15864753 -186463594 - MER50 LTR ERV1 0 734 251 919 103 0 0 chr4 15864761 15864897 -186463450 - AluSg/x SINE Alu -1 309 174 443 264 101 8 chr4 15864961 15865090 -186463257 - MER50 LTR ERV1 -584 150 10 254 311 0 0 chr4 15865099 15865173 -186463174 - L2 LINE L2 -6 3307 3234 1189 133 49 8 chr4 15865397 15865700 -186462647 + MER83B LTR ERV1 3 378 0 277 321 84 70 chr4 15866156 15866455 -186461892 - L2 LINE L2 -93 3179 2877 237 373 0 0 chr4 15866523 15866598 -186461749 - MIR SINE MIR -71 191 117 318 260 55 0 chr4 15866722 15866837 -186461510 + MIR SINE MIR 32 161 -63 1291 127 101 13 chr4 15866866 15867103 -186461244 - Tigger2 DNA MER2_type 0 2718 2461 4401 139 23 20 chr4 15867156 15867898 -186460449 - Tigger2 DNA MER2_type -1974 744 1 486 260 70 45 chr4 15868022 15868186 -186460161 - MLT1I LTR MaLR -177 232 61 4085 74 0 4 chr4 15868186 15868699 -186459648 + MER9 LTR ERVK 1 511 0 486 260 70 45 chr4 15868699 15868734 -186459613 - MLT1I LTR MaLR -348 61 28 307 182 104 13 chr4 15869175 15869252 -186459095 + MER51C LTR ERV1 346 429 -211 888 233 5 32 chr4 15869281 15869500 -186458847 + MER51C LTR ERV1 428 640 0 194 220 0 40 chr4 15869571 15869621 -186458726 - L2 LINE L2 -5 3308 3261 1186 157 22 110 chr4 15869891 15870209 -186458138 + MER74A LTR ERVL 269 558 0 324 302 85 52 chr4 15870843 15870998 -186457349 - MIR SINE MIR -32 176 4 261 330 34 0 chr4 15871549 15871637 -186456710 + MIR SINE MIR 38 128 -80 185 321 0 0 chr4 15871644 15871697 -186456650 - L2 LINE L2 -6 3266 3214 257 350 8 17 chr4 15871705 15871822 -186456525 + MIR SINE MIR 10 125 -137 532 220 8 42 chr4 15871989 15872107 -186456240 + MER81 DNA DNA 1 114 0 992 209 90 0 chr4 15872624 15872858 -186455489 - MLT1B LTR MaLR -125 265 11 673 317 87 24 chr4 15873071 15873497 -186454850 - L1MC4a LINE L1 -1906 5902 5450 227 272 196 0 chr4 15873649 15873741 -186454606 + L2 LINE L2 3155 3264 -8 235 329 12 12 chr4 15873804 15873886 -186454461 + L2 LINE L2 3186 3267 -5 3929 160 66 6 chr4 15874162 15874843 -186453504 - MER72 LTR ERV1 0 722 1 1168 221 12 4 chr4 15874999 15875253 -186453094 + AluJo SINE Alu 35 290 -22 23 0 0 0 chr4 15875253 15875276 -186453071 + AT_rich Low_complexity Low_complexity 1 23 0 2890 116 12 0 chr4 15875617 15876021 -186452326 + MSTA LTR MaLR 20 428 0 2082 204 21 41 chr4 15876316 15876831 -186451516 - MLT1D LTR MaLR 0 505 1 2168 185 72 6 chr4 15877137 15877612 -186450735 + Charlie1b DNA MER1_type 18 523 0 1673 178 3 13 chr4 15877812 15878127 -186450220 + AluJo SINE Alu 1 312 0 310 312 38 32 chr4 15878394 15878551 -186449796 + MIR SINE MIR 93 250 -12 25 0 0 0 chr4 15878791 15878816 -186449531 + GC_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr4 15879007 15879029 -186449318 + AT_rich Low_complexity Low_complexity 1 22 0 411 289 129 47 chr4 15879287 15879519 -186448828 - MIR SINE MIR -2 260 10 1581 286 102 28 chr4 15879704 15880527 -186447820 - L2 LINE L2 -72 3241 2348 2525 138 6 3 chr4 15880581 15880944 -186447403 - THE1B LTR MaLR 0 364 1 355 291 67 22 chr4 15881412 15881546 -186446801 - MIR3 SINE MIR -49 159 20 2073 127 10 20 chr4 15881603 15881903 -186446444 + AluSx SINE Alu 1 297 -15 960 290 90 36 chr4 15881954 15882420 -186445927 + L1MC4a LINE L1 5501 5991 -130 1361 226 65 42 chr4 15883152 15883537 -186444810 + MLT1D LTR MaLR 7 400 -105 779 207 0 28 chr4 15883539 15883806 -186444541 + AluJb SINE Alu 159 421 0 227 191 0 0 chr4 15883810 15883852 -186444495 + LTR45B LTR ERV1 178 219 -270 426 203 0 0 chr4 15883861 15883940 -186444407 + MLT1D LTR MaLR 427 505 0 1916 177 0 3 chr4 15884038 15884349 -186443998 + AluJb SINE Alu 1 310 -2 705 244 78 79 chr4 15884444 15884919 -186443428 + L1MC4 LINE L1 7463 8013 -29 2440 132 50 65 chr4 15885130 15885308 -186443039 + LTR45B LTR ERV1 18 197 -292 1580 185 3 14 chr4 15885308 15885595 -186442752 + AluJo SINE Alu 9 292 -20 2440 132 50 65 chr4 15885595 15885895 -186442452 + LTR45B LTR ERV1 197 489 0 783 294 155 14 chr4 15886242 15886661 -186441686 - L2 LINE L2 -1 3312 2835 2166 214 78 98 chr4 15886705 15887440 -186440907 + MER21B LTR ERV1 40 759 -104 213 346 26 0 chr4 15887459 15887537 -186440810 - L2 LINE L2 -475 2839 2760 294 288 24 64 chr4 15887585 15887710 -186440637 - MIR SINE MIR -55 207 88 886 64 0 0 chr4 15887883 15887992 -186440355 + MER57B LTR ERV1 322 430 -4 219 69 0 0 chr4 15888069 15888098 -186440249 + (T)n Simple_repeat Simple_repeat 1 29 0 1238 150 5 5 chr4 15888201 15888394 -186439953 - AluJo SINE Alu -119 193 1 24 67 0 0 chr4 15888415 15888460 -186439887 + AT_rich Low_complexity Low_complexity 1 45 0 343 191 0 0 chr4 15888511 15888579 -186439768 + MER113 DNA MER1_type? 234 301 -220 195 42 0 0 chr4 15888579 15888603 -186439744 + (GAAA)n Simple_repeat Simple_repeat 3 26 0 248 130 22 0 chr4 15888622 15888668 -186439679 + A-rich Low_complexity Low_complexity 4 50 0 357 24 0 0 chr4 15888900 15888942 -186439405 + (GA)n Simple_repeat Simple_repeat 2 43 0 254 333 36 9 chr4 15889154 15889265 -186439082 - L2 LINE L2 -5 3267 3154 21 0 0 0 chr4 15889341 15889362 -186438985 + AT_rich Low_complexity Low_complexity 1 21 0 1896 248 39 4 chr4 15890600 15891084 -186437263 + L1ME3A LINE L1 5427 5927 -243 622 192 70 13 chr4 15891191 15891347 -186437000 + L1ME3A LINE L1 5923 6087 -83 697 263 5 56 chr4 15891358 15891571 -186436776 - MLT1A2 LTR MaLR -172 202 1 252 296 188 17 chr4 15892292 15892468 -186435879 - MLT1L LTR MaLR -201 414 209 272 272 0 19 chr4 15892490 15892593 -186435754 - L1MC4 LINE L1 -1328 6714 6614 350 287 144 29 chr4 15893566 15893729 -186434618 - MLT1J LTR MaLR -5 506 324 1022 171 48 187 chr4 15893729 15894018 -186434329 + MSTD LTR MaLR 1 206 -190 4388 104 32 3 chr4 15894018 15894603 -186433744 - LTR43 LTR ERV1 0 602 1 1022 171 48 187 chr4 15894603 15894768 -186433579 + MSTD LTR MaLR 206 392 -4 2371 86 7 0 chr4 15895025 15895327 -186433020 - AluSp SINE Alu -9 304 1 286 241 25 25 chr4 15895368 15895447 -186432900 - MLT1L LTR MaLR -536 79 1 33 43 0 0 chr4 15895939 15895986 -186432361 + AT_rich Low_complexity Low_complexity 1 47 0 2815 129 19 14 chr4 15896081 15896507 -186431840 - MSTA LTR MaLR 0 428 1 2378 60 0 0 chr4 15896674 15897004 -186431343 + AluY SINE Alu 1 330 0 599 316 52 5 chr4 15897212 15897424 -186430923 - MIR SINE MIR -33 229 8 2009 117 24 14 chr4 15897695 15897986 -186430361 - AluSp SINE Alu -17 296 3 259 360 0 0 chr4 15898184 15898273 -186430074 + MIR SINE MIR 58 146 -62 696 320 9 9 chr4 15898320 15898542 -186429805 + MIR SINE MIR 41 262 0 1096 283 104 46 chr4 15899049 15899636 -186428711 + L1MC4a LINE L1 5543 6163 -1645 337 141 87 54 chr4 15899662 15899754 -186428593 + MER113 DNA MER1_type? 120 214 -307 264 77 0 0 chr4 15899765 15899804 -186428543 + (TC)n Simple_repeat Simple_repeat 2 40 0 414 0 0 0 chr4 15899804 15899850 -186428497 + (CA)n Simple_repeat Simple_repeat 1 46 0 410 335 57 31 chr4 15899911 15900105 -186428242 + L2 LINE L2 3019 3217 -55 3352 198 48 21 chr4 15900620 15901323 -186427024 + MER72 LTR ERV1 1 722 0 1990 200 48 28 chr4 15901942 15902437 -186425910 - MLT1D LTR MaLR 0 505 1 667 271 61 33 chr4 15903100 15903314 -186425033 + MIR SINE MIR 19 238 -24 1703 260 106 48 chr4 15903426 15903521 -186424826 - L2 LINE L2 -1048 2266 2178 2252 123 0 0 chr4 15903521 15903821 -186424526 + AluSx SINE Alu 1 300 -12 1703 260 106 48 chr4 15903821 15904482 -186423865 - L2 LINE L2 -1136 2178 1466 262 255 75 11 chr4 15904490 15904584 -186423763 + MIR SINE MIR 106 205 -57 268 271 79 50 chr4 15905088 15905228 -186423119 + MIR3 SINE MIR 58 201 -7 3563 204 24 62 chr4 15905341 15906349 -186421998 - LTR5 LTR ERVK 0 969 1 1323 150 14 1 chr4 15906584 15906956 -186421391 - MSTB LTR MaLR 0 426 1 554 238 22 40 chr4 15907347 15907499 -186420848 + MLT1H1 LTR MaLR 401 555 0 234 364 45 0 chr4 15907561 15907671 -186420676 - MIR3 SINE MIR -17 191 77 1272 228 25 3 chr4 15907673 15908033 -186420314 - L1 LINE L1 -2751 3395 3028 282 298 67 10 chr4 15908249 15908353 -186419994 + LTR33A LTR ERVL 61 170 -353 635 178 40 7 chr4 15908559 15908711 -186419636 + LTR33 LTR ERVL 345 501 -20 2109 145 0 0 chr4 15909260 15909563 -186418784 + AluSx SINE Alu 1 303 -9 789 169 0 0 chr4 15909738 15909856 -186418491 - FLAM_C SINE Alu -15 118 1 256 368 9 0 chr4 15910150 15910256 -186418091 + MIR3 SINE MIR 66 172 -36 2620 108 68 22 chr4 15910413 15910822 -186417525 - MSTA LTR MaLR 0 428 1 1732 193 13 0 chr4 15911194 15911500 -186416847 - AluSx SINE Alu -2 310 1 1160 228 97 79 chr4 15911500 15911827 -186416520 - HAL1 LINE L1 -1011 1496 1177 2691 35 3 0 chr4 15911827 15912137 -186416210 - AluY SINE Alu 0 311 1 1160 228 97 79 chr4 15912137 15912458 -186415889 - HAL1 LINE L1 -1330 1177 836 657 281 70 40 chr4 15912461 15912760 -186415587 - MLT1I LTR MaLR -2 407 100 1155 278 135 60 chr4 15912846 15913377 -186414970 - HAL1 LINE L1 -1669 838 233 2332 134 71 3 chr4 15913377 15913742 -186414605 - MLT1B LTR MaLR 0 390 1 1155 278 135 60 chr4 15913742 15913958 -186414389 - HAL1 LINE L1 -2274 233 35 256 176 14 27 chr4 15914060 15914134 -186414213 + GA-rich Low_complexity Low_complexity 1 73 0 3077 152 107 13 chr4 15914241 15914795 -186413552 - LTR9 LTR ERV1 -6 606 1 1196 140 0 0 chr4 15916159 15916337 -186412010 - MER41C LTR ERV1 0 554 377 936 194 23 60 chr4 15916451 15916667 -186411680 + LTR8A LTR ERV1 277 484 -243 534 128 26 0 chr4 15916667 15916745 -186411602 - AluSc SINE Alu -16 293 214 676 57 86 0 chr4 15916761 15917041 -186411306 + (TA)n Simple_repeat Simple_repeat 1 304 0 519 65 77 24 chr4 15917013 15917181 -186411166 + (TATAA)n Simple_repeat Simple_repeat 4 180 0 * 36 0 0 0 chr4 15917181 15917217 -186411130 + AT_rich Low_complexity Low_complexity 1 36 0 437 339 30 19 chr4 15917342 15917582 -186410765 - MIR SINE MIR 0 262 17 294 328 89 6 chr4 15918513 15918677 -186409670 - MIR3 SINE MIR -5 257 70 463 216 18 45 chr4 15918691 15918802 -186409545 + MER81 DNA DNA 2 109 -5 2192 113 10 0 chr4 15919010 15919310 -186409037 - AluSq SINE Alu -10 303 1 2451 72 19 0 chr4 15920602 15920909 -186407438 - AluSp SINE Alu 0 313 1 771 322 66 55 chr4 15921538 15922026 -186406321 + MLT1J LTR MaLR 16 508 -3 353 267 200 7 chr4 15922027 15922162 -186406185 - MIR SINE MIR -70 192 32 317 283 101 31 chr4 15922279 15922438 -186405909 - MIR SINE MIR -91 171 2 244 409 7 14 chr4 15923118 15923260 -186405087 + L2 LINE L2 2609 2749 -565 452 226 7 82 chr4 15923263 15923297 -186405050 + MLT1H LTR MaLR 10 45 -504 2902 95 14 0 chr4 15923297 15923667 -186404680 - THE1C LTR MaLR 0 375 1 452 226 7 82 chr4 15923667 15923778 -186404569 + MLT1H LTR MaLR 45 144 -405 550 191 55 0 chr4 15923819 15923929 -186404418 - L1MC1 LINE L1 -1 6332 6217 239 243 135 20 chr4 15923938 15924086 -186404261 + L1MC/D LINE L1 5723 5887 -1921 482 211 29 88 chr4 15924147 15924318 -186404029 - MER104 DNA Tc2 -3 177 17 6467 133 34 17 chr4 15924350 15924648 -186403699 - L1MA4A LINE L1 -3 6300 6009 405 0 0 0 chr4 15924648 15924693 -186403654 + (CA)n Simple_repeat Simple_repeat 1 45 0 6467 133 34 17 chr4 15924693 15925880 -186402467 - L1MA4A LINE L1 -294 6009 4770 2097 124 0 0 chr4 15925880 15926171 -186402176 - AluSc SINE Alu -6 303 13 6467 133 34 17 chr4 15926171 15926342 -186402005 - L1MA4A LINE L1 -1533 4770 4603 240 278 144 0 chr4 15926995 15927092 -186401255 - L2 LINE L2 -12 3301 3191 289 282 141 88 chr4 15927143 15927244 -186401103 - MLT1J LTR MaLR -175 336 242 3168 61 35 5 chr4 15927244 15927498 -186400849 + L1PA6 LINE L1 5747 6019 -135 180 0 0 0 chr4 15927498 15927518 -186400829 + (GGGA)n Simple_repeat Simple_repeat 1 20 0 3168 61 35 5 chr4 15927518 15927659 -186400688 + L1PA6 LINE L1 6019 6154 0 289 282 141 88 chr4 15927659 15927876 -186400471 - MLT1J LTR MaLR -269 242 1 2426 82 0 0 chr4 15928162 15928465 -186399882 + AluSc SINE Alu 1 303 -6 193 0 61 30 chr4 15929364 15929397 -186398950 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 460 316 0 0 chr4 15929400 15929536 -186398811 - MIR SINE MIR -8 254 119 2098 163 54 32 chr4 15929869 15930407 -186397940 + MLT2A2 LTR ERVL 1 554 0 231 122 41 20 chr4 15930407 15930456 -186397891 + LTR67 LTR ERVL 508 557 0 202 28 28 28 chr4 15930523 15930559 -186397788 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 1720 167 0 11 chr4 15930577 15930847 -186397500 - AluJo SINE Alu -45 267 1 2452 92 10 0 chr4 15930905 15931225 -186397122 + L1PA13 LINE L1 5822 6144 -19 1765 62 9 4 chr4 15931857 15932082 -186396265 + AluY SINE Alu 83 308 -3 2173 145 0 35 chr4 15932803 15933147 -186395200 + MER7A DNA MER2_type 1 330 -16 317 282 8 26 chr4 15933151 15933268 -186395079 + (TATG)n Simple_repeat Simple_repeat 2 116 0 191 371 0 0 chr4 15934372 15934434 -186393913 - MIR SINE MIR -62 146 85 1654 173 36 10 chr4 15934559 15934860 -186393487 - AluJb SINE Alu -3 309 1 634 244 145 50 chr4 15934877 15935278 -186393069 + L1M4 LINE L1 2838 3276 -2870 457 292 37 51 chr4 15935474 15935583 -186392764 + MIR SINE MIR 2 106 -143 527 139 13 0 chr4 15935583 15935662 -186392685 + MADE1 DNA Mariner 1 80 0 457 292 37 51 chr4 15935662 15935741 -186392606 + MIR SINE MIR 106 185 -64 252 0 0 0 chr4 15937261 15937289 -186391058 + (T)n Simple_repeat Simple_repeat 1 28 0 44010 29 22 1 chr4 15937312 15943338 -186385009 - L1HS LINE L1 0 6155 1 28 48 0 0 chr4 15943817 15943859 -186384488 + AT_rich Low_complexity Low_complexity 1 42 0 372 247 171 51 chr4 15945098 15945162 -186383185 + MER5A DNA MER1_type 13 68 -121 2405 97 0 0 chr4 15945162 15945473 -186382874 + AluY SINE Alu 1 311 0 372 247 171 51 chr4 15945473 15945566 -186382781 + MER5A DNA MER1_type 68 189 0 317 301 157 6 chr4 15945985 15946151 -186382196 - MIR SINE MIR 0 262 72 23 0 0 0 chr4 15947519 15947542 -186380805 + AT_rich Low_complexity Low_complexity 1 23 0 369 281 9 9 chr4 15947933 15948047 -186380300 - MIR SINE MIR -67 195 82 436 294 24 8 chr4 15948211 15948337 -186380010 + MIR SINE MIR 20 147 -115 1544 205 35 49 chr4 15948410 15948780 -186379567 + MLT1A1 LTR MaLR 1 365 0 191 111 0 28 chr4 15948876 15948912 -186379435 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 972 119 8 0 chr4 15949073 15949207 -186379140 + AluSq/x SINE Alu 1 135 -178 2341 112 0 0 chr4 15949207 15949519 -186378828 + AluSx SINE Alu 1 312 0 2953 140 19 13 chr4 15949525 15949990 -186378357 + L1MA5A LINE L1 5828 6295 -2 628 278 35 26 chr4 15950033 15950263 -186378084 + MIR SINE MIR 29 260 -2 15649 127 61 14 chr4 15951543 15955264 -186373083 + L1MA2 LINE L1 891 7559 -164 1531 86 68 32 chr4 15955264 15955485 -186372862 - MER30 DNA MER1_type -1 229 1 15649 127 61 14 chr4 15955485 15955659 -186372688 + L1MA2 LINE L1 7559 7723 0 5547 150 36 15 chr4 15955678 15956569 -186371778 + L1MA7 LINE L1 5262 6178 -113 2055 141 0 3 chr4 15956569 15956866 -186371481 + AluJb SINE Alu 1 296 -16 5547 150 36 15 chr4 15956866 15956983 -186371364 + L1MA7 LINE L1 6178 6291 0 644 260 115 4 chr4 15957635 15957870 -186370477 + MIR SINE MIR 2 262 0 310 293 120 16 chr4 15957870 15958112 -186370235 + L1MC/D LINE L1 5265 5531 -2277 872 134 0 63 chr4 15958119 15958261 -186370086 - FLAM_C SINE Alu 0 133 1 351 0 0 0 chr4 15958386 15958425 -186369922 + (TG)n Simple_repeat Simple_repeat 1 39 0 268 148 23 80 chr4 15958843 15958931 -186369416 + A-rich Low_complexity Low_complexity 1 83 0 2502 153 36 10 chr4 15959319 15959736 -186368611 + MSTB1 LTR MaLR 1 428 -4 431 226 83 106 chr4 15960032 15960183 -186368164 - MER112 DNA MER1_type -48 212 66 180 0 0 0 chr4 15960183 15960203 -186368144 + (TG)n Simple_repeat Simple_repeat 2 21 0 431 226 83 106 chr4 15960203 15960268 -186368079 - MER112 DNA MER1_type -194 66 1 30 0 0 0 chr4 15960539 15960569 -186367778 + AT_rich Low_complexity Low_complexity 1 30 0 25662 157 37 44 chr4 15960589 15965543 -186362804 - L1PA10 LINE L1 -24 6144 1246 2713 65 21 0 chr4 15965543 15965881 -186362466 - L1PA7 LINE L1 0 6154 5810 25662 157 37 44 chr4 15965881 15967118 -186361229 - L1PA10 LINE L1 -4922 1246 1 434 269 56 82 chr4 15967138 15967406 -186360941 + MIR SINE MIR 2 262 0 208 298 0 106 chr4 15967692 15967796 -186360551 + MIR SINE MIR 90 182 -80 204 206 0 0 chr4 15967871 15967905 -186360442 + (CTA)n Simple_repeat Simple_repeat 1 34 0 25 51 0 0 chr4 15968390 15968429 -186359918 + AT_rich Low_complexity Low_complexity 1 39 0 13227 97 10 4 chr4 15968516 15969780 -186358567 + L1PA8 LINE L1 3548 4804 -1368 2382 103 0 0 chr4 15969780 15970090 -186358257 + AluSg SINE Alu 1 310 0 13227 97 10 4 chr4 15970090 15971454 -186356893 + L1PA8 LINE L1 4804 6168 -4 6027 211 27 25 chr4 15971454 15972166 -186356181 + L1M4 LINE L1 3830 4539 -1639 2264 96 0 13 chr4 15972166 15972469 -186355878 - AluSg SINE Alu -11 299 1 6027 211 27 25 chr4 15972469 15972722 -186355625 + L1M4 LINE L1 4539 4790 -1388 1684 256 36 34 chr4 15972722 15973246 -186355101 + LTR45 LTR ERV1 1 525 0 6027 211 27 25 chr4 15973246 15973919 -186354428 + L1M4 LINE L1 4790 5465 -713 530 209 27 9 chr4 15973922 15974032 -186354315 + MLT1C LTR MaLR 2 113 -354 459 187 13 0 chr4 15974037 15974112 -186354235 + MER5A DNA MER1_type 114 189 0 182 337 0 47 chr4 15974750 15974836 -186353511 - MIR3 SINE MIR -7 201 120 404 286 60 54 chr4 15975272 15975440 -186352907 + MER5B DNA MER1_type 1 169 -9 347 327 0 0 chr4 15975442 15975543 -186352804 - MIR3 SINE MIR -41 167 67 327 311 146 9 chr4 15975724 15975943 -186352404 - MIR SINE MIR -1 261 13 1862 213 62 38 chr4 15977343 15977873 -186350474 + MER90 LTR ERV1 72 614 0 241 307 197 0 chr4 15978333 15978470 -186349877 - MIR SINE MIR -20 242 79 780 275 20 93 chr4 15979197 15979593 -186348754 - L2 LINE L2 0 3313 2947 424 223 37 79 chr4 15979598 15979813 -186348534 + L1ME1 LINE L1 5111 5316 -830 4526 147 30 10 chr4 15979820 15980587 -186347760 - L1MA5 LINE L1 -2 6298 5517 3991 116 24 22 chr4 15980589 15981221 -186347126 + L1PA16 LINE L1 5525 6157 -9 12193 158 40 31 chr4 15981228 15982040 -186346307 - L1MA5 LINE L1 -750 5396 4593 1776 145 52 0 chr4 15982040 15982397 -186345950 + AluSx SINE Alu 1 371 0 12193 158 40 31 chr4 15982397 15984245 -186344102 - L1MA5 LINE L1 -1553 4593 2849 2247 219 68 28 chr4 15984246 15984598 -186343749 + L1ME1 LINE L1 5294 5685 -481 3955 119 28 2 chr4 15984598 15985163 -186343184 - LTR19B LTR ERV1 0 580 1 2247 219 68 28 chr4 15985163 15985455 -186342892 + L1ME1 LINE L1 5685 5964 -202 852 300 115 15 chr4 15985472 15986230 -186342117 + L1ME4a LINE L1 4746 5584 -754 254 219 0 89 chr4 15986342 15986448 -186341899 + MLT1J LTR MaLR 108 267 -332 295 247 140 11 chr4 15986591 15986684 -186341663 + MLT1L LTR MaLR 442 546 -69 853 146 0 0 chr4 15986689 15986812 -186341535 + FLAM_C SINE Alu 1 123 -20 300 240 13 0 chr4 15986822 15986897 -186341450 + MLT1L LTR MaLR 540 615 0 1942 176 86 32 chr4 15986902 15987344 -186341003 + MLT1C LTR MaLR 1 466 -1 253 262 33 33 chr4 15987507 15987629 -186340718 + L1ME4a LINE L1 5751 5872 -298 799 291 142 14 chr4 15987699 15988129 -186340218 + L1MC4a LINE L1 5414 5898 -1910 32 26 0 0 chr4 15988399 15988438 -186339909 + AT_rich Low_complexity Low_complexity 1 39 0 238 167 12 60 chr4 15989327 15989411 -186338936 + L1ME4a LINE L1 6041 6120 -1 725 244 81 37 chr4 15990143 15990414 -186337933 + L2 LINE L2 1734 2016 -1298 399 206 0 21 chr4 15990420 15990517 -186337830 + L2 LINE L2 2218 2312 -1002 513 162 20 20 chr4 15990521 15990620 -186337727 - Tigger7 DNA MER2_type 0 2487 2389 * 1399 182 0 82 chr4 15990618 15990909 -186337438 - Tigger7 DNA MER2_type -466 267 1 1041 274 50 6 chr4 15990910 15991253 -186337094 + L2 LINE L2 2343 2700 -614 279 193 0 0 chr4 15991658 15991715 -186336632 - L2 LINE L2 -1040 2274 2218 216 167 30 45 chr4 15991721 15991787 -186336560 - L2 LINE L2 -1298 2016 1952 943 244 71 76 chr4 15991787 15992364 -186335983 + L1MC5 LINE L1 7340 7913 -48 231 36 0 0 chr4 15992401 15992429 -186335918 + (TTTTC)n Simple_repeat Simple_repeat 4 31 0 6252 74 15 63 chr4 15992443 15993445 -186334902 - SVA Other Other 0 1386 433 1542 73 11 25 chr4 15993464 15993739 -186334608 - SVA Other Other -520 866 596 5387 68 29 53 chr4 15993767 15994733 -186333614 - SVA Other Other -520 866 50 558 43 0 0 chr4 15994739 15994808 -186333539 + (GGGAGA)n Simple_repeat Simple_repeat 5 73 0 408 311 30 0 chr4 15994809 15994941 -186333406 + L2 LINE L2 2914 3049 -264 2380 157 11 39 chr4 15994941 15995381 -186332966 - MSTC LTR MaLR 0 428 1 305 207 30 40 chr4 15995386 15995537 -186332810 + LTR37B LTR ERV1 187 387 -81 759 243 22 0 chr4 15995560 15995745 -186332602 + L2 LINE L2 3121 3309 -4 1088 193 131 103 chr4 15995752 15996188 -186332159 + LTR37B LTR ERV1 10 457 -11 301 292 71 0 chr4 15996602 15996715 -186331632 + MER117 DNA MER1_type 33 153 -44 2509 150 50 11 chr4 15996789 15997230 -186331117 + LTR22A LTR ERVK 1 458 0 803 200 171 0 chr4 15997419 15997589 -186330758 + MER45C DNA AcHobo 750 948 -5 1966 159 107 39 chr4 15997651 15998210 -186330137 + pTR5 LTR ERV1 743 1339 -1099 4791 105 20 112 chr4 15998231 15999136 -186329211 + LTR12 LTR ERV1 5 826 0 2293 96 0 3 chr4 15999837 16000130 -186328217 - AluSc SINE Alu -17 292 1 261 316 82 10 chr4 16001305 16001403 -186326944 - L2 LINE L2 -12 3260 3156 318 219 149 18 chr4 16002320 16002434 -186325913 - L2 LINE L2 0 3313 3185 824 272 124 53 chr4 16002580 16003073 -186325274 + MLT1H1 LTR MaLR 28 555 0 2032 152 47 32 chr4 16003126 16003533 -186324814 + MLT2D LTR ERVL 2 414 0 313 371 13 39 chr4 16003605 16003781 -186324566 + MLT1H1-int LTR MaLR 302 472 -899 207 0 0 0 chr4 16003788 16003811 -186324536 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 1843 123 54 0 chr4 16003811 16004079 -186324268 - AluSx SINE Alu -26 286 1 313 371 13 39 chr4 16004079 16004131 -186324216 + MLT1H1-int LTR MaLR 472 524 -847 441 54 0 0 chr4 16004333 16004389 -186323958 + (TG)n Simple_repeat Simple_repeat 1 56 0 503 266 133 67 chr4 16004402 16004823 -186323524 + L1MC4a LINE L1 5258 5706 -415 458 268 63 8 chr4 16004826 16004953 -186323394 + L2 LINE L2 3180 3313 0 409 242 129 0 chr4 16004960 16005084 -186323263 + L1MC4a LINE L1 5723 5862 -1946 263 234 0 47 chr4 16005469 16005533 -186322814 + L1ME2 LINE L1 5965 6025 -139 210 298 53 90 chr4 16006824 16007012 -186321335 + L2 LINE L2 2864 3044 -228 829 231 108 0 chr4 16007019 16007222 -186321125 + MIR SINE MIR 38 262 0 1759 283 135 40 chr4 16007377 16007650 -186320697 - L2 LINE L2 -282 3031 2785 6786 76 10 2 chr4 16007650 16009012 -186319335 - L1PA10 LINE L1 0 6168 4784 1759 283 135 40 chr4 16009012 16010015 -186318332 - L2 LINE L2 -528 2785 1626 1004 93 0 105 chr4 16010030 16010202 -186318145 - AluJb SINE Alu -93 219 66 302 264 255 35 chr4 16010297 16010584 -186317763 - L2 LINE L2 -1846 1468 1093 2322 153 5 13 chr4 16010584 16010977 -186317370 - MLT1B LTR MaLR 0 390 1 302 264 255 35 chr4 16010977 16011030 -186317317 - L2 LINE L2 -2221 1093 1053 1239 158 36 43 chr4 16011036 16011341 -186317006 - AluJb SINE Alu 0 312 49 320 374 0 0 chr4 16011341 16011480 -186316867 - L2 LINE L2 -2259 1055 917 664 297 66 40 chr4 16011485 16011865 -186316482 + L2 LINE L2 2300 2689 -625 293 250 196 25 chr4 16012012 16012216 -186316131 + L2 LINE L2 2835 3073 -199 225 0 0 0 chr4 16012875 16012900 -186315447 + (GA)n Simple_repeat Simple_repeat 2 26 0 354 300 42 32 chr4 16012900 16013090 -186315257 - L1MC4a LINE L1 -1873 5935 5744 446 285 145 21 chr4 16013093 16013286 -186315061 - L1MC4a LINE L1 -2099 5709 5493 286 309 81 0 chr4 16013589 16013725 -186314622 + MIR SINE MIR 83 229 -33 340 260 52 0 chr4 16013808 16013885 -186314462 - L2 LINE L2 0 3313 3233 245 319 31 38 chr4 16013962 16014122 -186314225 + MIR SINE MIR 91 249 -13 2178 93 18 0 chr4 16014182 16014485 -186313862 - AluSx SINE Alu 0 308 1 2173 121 7 0 chr4 16014769 16015067 -186313280 + AluSx SINE Alu 1 300 -12 23 86 0 0 chr4 16015180 16015238 -186313109 + AT_rich Low_complexity Low_complexity 1 58 0 261 270 7 102 chr4 16015497 16015634 -186312713 + L2 LINE L2 3184 3307 -6 2825 22 0 9 chr4 16016113 16016428 -186311919 + AluYb8 SINE Alu 1 312 -6 996 135 0 0 chr4 16016988 16017121 -186311226 + AluSq/x SINE Alu 1 133 -179 2306 99 0 3 chr4 16017306 16017599 -186310748 + AluSc SINE Alu 1 292 -17 198 0 0 0 chr4 16018099 16018121 -186310226 + (T)n Simple_repeat Simple_repeat 1 22 0 1591 250 160 20 chr4 16018905 16019781 -186308566 - L2 LINE L2 -3 3310 2298 586 257 26 66 chr4 16019782 16020008 -186308339 - MIR SINE MIR -37 225 9 216 0 0 0 chr4 16020011 16020035 -186308312 + (CA)n Simple_repeat Simple_repeat 2 25 0 491 295 77 22 chr4 16020086 16020269 -186308078 - MLT1K LTR MaLR -368 220 28 2996 167 56 12 chr4 16020679 16021253 -186307094 - L1MC1 LINE L1 -11 6322 5724 328 252 59 52 chr4 16021400 16021535 -186306812 - L1ME4a LINE L1 -3 6118 5983 24 0 0 0 chr4 16021680 16021704 -186306643 + AT_rich Low_complexity Low_complexity 1 24 0 2220 149 58 28 chr4 16021886 16022384 -186305963 + L1MA9 LINE L1 5692 6081 -231 30 69 0 0 chr4 16022444 16022502 -186305845 + AT_rich Low_complexity Low_complexity 1 58 0 285 281 11 22 chr4 16022580 16022669 -186305678 + (TATG)n Simple_repeat Simple_repeat 1 88 0 2202 87 33 3 chr4 16022691 16022990 -186305357 - AluSg SINE Alu -2 308 1 199 256 0 77 chr4 16023067 16023145 -186305202 - L2 LINE L2 0 3272 3201 1388 111 0 5 chr4 16023659 16023877 -186304470 + AluSp SINE Alu 98 314 0 1563 170 35 28 chr4 16023917 16024229 -186304118 + AluJb SINE Alu 1 314 0 258 161 218 23 chr4 16024303 16024390 -186303957 - L2 LINE L2 0 3313 3210 2678 189 51 8 chr4 16024390 16024981 -186303366 + L1MB7 LINE L1 5560 6175 -9 342 275 12 31 chr4 16025272 16025432 -186302915 + GA-rich Low_complexity Low_complexity 2 158 0 393 328 0 0 chr4 16025432 16025563 -186302784 - MIR SINE MIR -10 252 122 228 339 27 9 chr4 16025815 16025927 -186302420 - MIR SINE MIR -138 124 11 1205 192 51 25 chr4 16026112 16026416 -186301931 + L1MA7 LINE L1 5903 6229 -73 1907 161 0 0 chr4 16026464 16026769 -186301578 + L1PA16 LINE L1 5858 6162 -4 641 169 7 0 chr4 16026769 16026898 -186301449 + L1MA7 LINE L1 6155 6291 0 2258 96 0 0 chr4 16026968 16027273 -186301074 + AluSp SINE Alu 3 307 0 791 238 112 41 chr4 16027527 16028094 -186300253 - MER34C LTR ERV1 0 720 1 1223 223 99 60 chr4 16029333 16029472 -186298875 + L1MC4a LINE L1 5589 5721 -2087 2383 100 0 0 chr4 16029472 16029781 -186298566 + AluSg SINE Alu 2 310 0 1223 223 99 60 chr4 16029781 16030107 -186298240 + L1MC4a LINE L1 5721 6072 -1736 308 158 40 89 chr4 16031091 16031192 -186297155 + LTR33 LTR ERVL 423 518 -3 247 242 67 0 chr4 16031803 16031968 -186296379 + (TTTA)n Simple_repeat Simple_repeat 4 179 0 964 286 140 22 chr4 16032049 16032258 -186296089 + L2 LINE L2 2741 2924 -389 2027 96 4 0 chr4 16032258 16032518 -186295829 + AluSp SINE Alu 39 299 -14 964 286 140 22 chr4 16032518 16032821 -186295526 + L2 LINE L2 2924 3313 0 379 203 12 18 chr4 16033134 16033297 -186295050 + (TA)n Simple_repeat Simple_repeat 1 162 0 228 167 62 73 chr4 16033297 16033393 -186294954 + L1MA5A LINE L1 6070 6164 -133 246 311 44 44 chr4 16033869 16033959 -186294388 + L2 LINE L2 3136 3225 -47 1501 196 3 27 chr4 16034017 16034349 -186293998 - MER33 DNA MER1_type 0 324 1 578 98 0 0 chr4 16034501 16034583 -186293764 + L1MA1 LINE L1 5867 5948 -354 1650 118 0 0 chr4 16034584 16034805 -186293542 + AluSq SINE Alu 2 222 -91 229 122 0 0 chr4 16034805 16034846 -186293501 + AluSq SINE Alu 259 299 -4 2487 110 14 22 chr4 16034846 16035211 -186293136 + L1MA1 LINE L1 5935 6296 -6 192 77 0 0 chr4 16035495 16035521 -186292826 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1212 297 36 8 chr4 16035574 16035961 -186292386 + LTR16C LTR ERVL 2 399 -92 1032 316 76 62 chr4 16036191 16036931 -186291416 + HERV16 LTR ERVL 365 1126 -3870 1684 173 7 23 chr4 16036931 16037237 -186291110 + AluJo SINE Alu 1 301 -11 1032 316 76 62 chr4 16037237 16037544 -186290803 + HERV16 LTR ERVL 1126 1427 -3569 648 279 32 16 chr4 16037863 16038053 -186290294 + HERV16 LTR ERVL 1895 2087 -3677 1656 308 84 37 chr4 16038106 16038215 -186290132 + HERV16 LTR ERVL 2206 2308 -3456 1303 203 125 28 chr4 16038215 16038574 -186289773 + MSTD LTR MaLR 3 396 0 1656 308 84 37 chr4 16038574 16039360 -186288987 + HERV16 LTR ERVL 2308 3143 -2621 2161 189 52 61 chr4 16039416 16040052 -186288295 - MER45R DNA AcHobo 0 1581 952 665 203 89 19 chr4 16040057 16040215 -186288132 + MER63 DNA MER1_type 892 1060 0 2143 124 32 42 chr4 16040312 16040691 -186287656 + THE1C LTR MaLR 1 375 0 1298 154 24 8 chr4 16041701 16041947 -186286400 - MER45R DNA AcHobo -620 961 712 925 238 57 51 chr4 16041993 16042308 -186286039 + LTR16C LTR ERVL 175 491 0 2451 148 20 36 chr4 16042315 16042754 -186285593 - MSTB1 LTR MaLR 0 432 1 1194 211 64 0 chr4 16043053 16043328 -186285019 - MER58B DNA MER1_type -12 329 37 254 233 50 17 chr4 16043875 16043935 -186284412 - MER58B DNA MER1_type -36 305 244 427 222 44 0 chr4 16043969 16044059 -186284288 + MER58B DNA MER1_type 244 337 -4 23 68 0 0 chr4 16044232 16044276 -186284071 + AT_rich Low_complexity Low_complexity 1 44 0 281 308 29 122 chr4 16044314 16044486 -186283861 + L2 LINE L2 2929 3084 -188 1722 156 3 14 chr4 16044553 16044836 -186283511 + AluSx SINE Alu 1 280 -32 423 214 0 0 chr4 16044888 16045019 -186283328 + CT-rich Low_complexity Low_complexity 1 131 0 450 0 0 0 chr4 16045313 16045363 -186282984 + (CA)n Simple_repeat Simple_repeat 2 51 0 207 0 0 0 chr4 16046318 16046341 -186282006 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 1852 153 6 26 chr4 16046611 16046924 -186281423 - L1MC1 LINE L1 0 6333 6027 183 318 15 30 chr4 16047316 16047382 -186280965 - L2 LINE L2 -1 3312 3248 516 282 20 0 chr4 16047488 16047637 -186280710 + MIR SINE MIR 85 236 -26 585 293 105 21 chr4 16047718 16047957 -186280390 - MIR SINE MIR -2 260 2 1965 132 35 0 chr4 16048292 16048580 -186279767 - AluSx SINE Alu -14 298 1 253 268 72 58 chr4 16048623 16048761 -186279586 - L2 LINE L2 -555 2759 2620 239 294 88 57 chr4 16049695 16049889 -186278458 - L2 LINE L2 -213 3059 2860 1806 172 76 11 chr4 16050078 16050432 -186277915 + LOR1a LTR ERV1 1 377 -120 30 0 0 0 chr4 16050432 16050462 -186277885 + AT_rich Low_complexity Low_complexity 1 30 0 239 214 29 14 chr4 16050507 16050577 -186277770 - L1ME LINE L1 -252 5869 5799 * 1486 226 55 30 chr4 16050565 16051003 -186277344 - L1ME1 LINE L1 -20 6146 5703 1820 126 114 6 chr4 16051038 16051350 -186276997 + MSTA LTR MaLR 1 346 -82 231 235 0 0 chr4 16051350 16051401 -186276946 + LTR30 LTR ERV1 2 52 -670 1621 98 197 203 chr4 16051401 16052090 -186276257 + pTR5 LTR ERV1 57 556 -158 582 101 0 101 chr4 16052123 16052222 -186276125 + MSTA LTR MaLR 340 428 0 2225 109 3 0 chr4 16052299 16052593 -186275754 + AluSq SINE Alu 1 295 -18 413 299 48 7 chr4 16054338 16054485 -186273862 - L1MC4a LINE L1 -1914 5894 5742 1567 187 0 18 chr4 16055436 16055741 -186272606 - AluJb SINE Alu 0 306 7 30 45 0 0 chr4 16055763 16055807 -186272540 + AT_rich Low_complexity Low_complexity 1 44 0 2012 139 7 10 chr4 16055971 16056272 -186272075 + AluSx SINE Alu 1 300 -12 1038 180 0 6 chr4 16056292 16056475 -186271872 + AluJb SINE Alu 130 311 -1 578 307 95 45 chr4 16056977 16057440 -186270907 - L1ME LINE L1 -297 5824 5339 261 341 110 16 chr4 16057728 16057910 -186270437 + MIR SINE MIR 55 253 -9 1071 54 0 0 chr4 16057916 16058045 -186270302 + AluSg/x SINE Alu 172 300 -12 234 185 0 56 chr4 16058462 16058516 -186269831 + LTR67 LTR ERVL 1 51 -506 285 98 0 0 chr4 16058550 16058591 -186269756 + (TTCA)n Simple_repeat Simple_repeat 2 42 0 374 282 0 57 chr4 16058592 16058716 -186269631 - L2 LINE L2 -25 3288 3172 1215 139 4 94 chr4 16058724 16058969 -186269378 + AluJb SINE Alu 85 307 -5 312 230 95 40 chr4 16059657 16059783 -186268564 + MIR SINE MIR 40 172 -90 660 251 284 22 chr4 16059806 16060165 -186268182 - MLT1J LTR MaLR -45 466 14 231 36 0 0 chr4 16060184 16060212 -186268135 + (TC)n Simple_repeat Simple_repeat 2 29 0 2192 107 7 3 chr4 16060214 16060512 -186267835 - AluSq SINE Alu -14 299 1 623 208 66 56 chr4 16061040 16061237 -186267110 + L1ME LINE L1 5463 5661 -460 817 250 45 45 chr4 16061348 16061700 -186266647 - SVA Other Other -573 813 462 2053 90 3 40 chr4 16063508 16063809 -186264538 + AluY SINE Alu 1 290 -21 569 141 0 0 chr4 16064324 16064402 -186263945 + AluJ/FLAM SINE Alu 2 79 -233 473 264 138 25 chr4 16066122 16066281 -186262066 + MER5B DNA MER1_type 1 177 -1 237 334 85 33 chr4 16067616 16067779 -186260568 - MIR SINE MIR -67 141 19 21 36 0 0 chr4 16068343 16068371 -186259976 + AT_rich Low_complexity Low_complexity 1 28 0 340 248 97 35 chr4 16068612 16068757 -186259590 - MIR SINE MIR -58 204 51 245 291 100 36 chr4 16068806 16068916 -186259431 + MIR3 SINE MIR 62 178 -30 550 119 12 0 chr4 16069136 16069147 -186259200 + AluJ/FRAM SINE Alu 224 233 -79 1514 96 15 0 chr4 16069147 16069345 -186259002 + AluSg1 SINE Alu 1 201 -108 550 119 12 0 chr4 16069345 16069417 -186258930 + AluJ/FRAM SINE Alu 233 308 -4 406 279 91 30 chr4 16069568 16069765 -186258582 - MER112 DNA MER1_type -1 259 51 858 201 39 6 chr4 16069821 16070000 -186258347 - MER20 DNA MER1_type -5 214 30 351 299 123 0 chr4 16070165 16070319 -186258028 + MIR SINE MIR 59 231 -31 2088 93 29 39 chr4 16070465 16070777 -186257570 - AluSc SINE Alu 0 309 1 4361 151 40 1 chr4 16071051 16071784 -186256563 - L1MA9 LINE L1 0 6312 5552 685 209 143 61 chr4 16071876 16071918 -186256429 - MIR SINE MIR -44 218 181 1771 151 10 20 chr4 16071918 16072210 -186256137 + AluJo SINE Alu 1 289 -23 685 209 143 61 chr4 16072210 16072363 -186255984 - MIR SINE MIR -81 181 7 1242 170 154 51 chr4 16072574 16072827 -186255520 + MER2 DNA MER2_type 1 293 -51 2441 103 0 0 chr4 16072827 16073139 -186255208 - AluSx SINE Alu 0 312 1 1242 170 154 51 chr4 16073139 16073197 -186255150 + MER2 DNA MER2_type 293 344 0 2532 26 10 20 chr4 16073231 16073537 -186254810 + L1PA4 LINE L1 5853 6155 0 1494 197 35 14 chr4 16073731 16074035 -186254312 + MER58B DNA MER1_type 29 341 0 542 219 12 98 chr4 16074037 16074201 -186254146 + L2 LINE L2 3151 3300 -13 21 36 0 0 chr4 16074220 16074248 -186254099 + AT_rich Low_complexity Low_complexity 1 28 0 364 272 34 48 chr4 16074281 16074355 -186253992 - MIR SINE MIR -86 176 103 2311 99 0 3 chr4 16074355 16074658 -186253689 + AluSg SINE Alu 1 302 -8 364 272 34 48 chr4 16074658 16074730 -186253617 - MIR SINE MIR -159 103 32 1811 211 62 27 chr4 16075686 16076136 -186252211 - MER31B LTR ERV1 0 466 1 1531 118 57 0 chr4 16076381 16076593 -186251754 + AluSq SINE Alu 7 230 -83 239 333 79 45 chr4 16077213 16077504 -186250843 - L2 LINE L2 -939 2375 2075 * 294 306 126 46 chr4 16077450 16077545 -186250802 + L3 LINE CR1 1175 1261 -316 1945 134 31 10 chr4 16077545 16077836 -186250511 + AluSx SINE Alu 1 297 -15 294 306 126 46 chr4 16077836 16078001 -186250346 + L3 LINE CR1 1261 1456 -121 1871 138 0 4 chr4 16078189 16078465 -186249882 - AluSx SINE Alu -36 276 2 2669 142 11 36 chr4 16078484 16078928 -186249419 - Tigger2a DNA MER2_type 0 434 2 24 32 0 0 chr4 16079033 16079064 -186249283 + AT_rich Low_complexity Low_complexity 1 31 0 1710 181 3 16 chr4 16079867 16080171 -186248176 + AluJo SINE Alu 1 300 -12 318 237 57 144 chr4 16080341 16080535 -186247812 + MER5B DNA MER1_type 2 178 0 208 320 105 70 chr4 16080550 16080722 -186247625 - MER5B DNA MER1_type 0 178 1 2238 111 3 0 chr4 16081022 16081329 -186247018 - AluSp SINE Alu -5 308 1 293 216 150 39 chr4 16083142 16083295 -186245052 + L1MC5 LINE L1 7727 7896 -65 36 70 0 0 chr4 16083349 16083420 -186244927 + AT_rich Low_complexity Low_complexity 1 71 0 2255 120 3 0 chr4 16083690 16083999 -186244348 - AluSq SINE Alu -3 310 1 2186 102 10 3 chr4 16084126 16084421 -186243926 - AluSq SINE Alu -16 297 1 24 32 0 0 chr4 16084600 16084631 -186243716 + AT_rich Low_complexity Low_complexity 1 31 0 1187 171 0 45 chr4 16084753 16084804 -186243543 + AluJb SINE Alu 87 139 -173 2420 84 3 3 chr4 16084804 16085115 -186243232 + AluSx SINE Alu 1 311 -1 1187 171 0 45 chr4 16085115 16085285 -186243062 + AluJb SINE Alu 139 298 -14 1053 191 53 14 chr4 16085327 16085536 -186242811 + MER20 DNA MER1_type 2 218 -1 1688 154 3 30 chr4 16085569 16085867 -186242480 + AluSx SINE Alu 1 290 -22 11143 55 5 2 chr4 16086453 16088549 -186239798 + L1PA6 LINE L1 4041 6150 -4 26 0 0 0 chr4 16088952 16088978 -186239369 + AT_rich Low_complexity Low_complexity 1 26 0 578 306 65 48 chr4 16089802 16090093 -186238254 - L2 LINE L2 -19 3294 2999 618 142 0 19 chr4 16090433 16090539 -186237808 + L1MA4 LINE L1 6197 6300 0 357 62 0 0 chr4 16090666 16090714 -186237633 + (TG)n Simple_repeat Simple_repeat 2 49 0 2400 96 0 0 chr4 16092138 16092439 -186235908 + AluSg SINE Alu 1 301 -9 21 71 0 0 chr4 16092701 16092743 -186235604 + AT_rich Low_complexity Low_complexity 1 42 0 1096 164 0 0 chr4 16096028 16096187 -186232160 - FRAM SINE Alu -7 159 1 1966 93 64 4 chr4 16096215 16096495 -186231852 - AluSg SINE Alu -13 297 1 764 281 35 4 chr4 16096627 16096858 -186231489 + L1ME3A LINE L1 5926 6163 -7 185 214 71 0 chr4 16097373 16097415 -186230932 + MIR SINE MIR 218 262 0 412 150 124 93 chr4 16098335 16098528 -186229819 - L1ME4a LINE L1 -41 6080 5882 219 36 0 0 chr4 16098555 16098583 -186229764 + (CA)n Simple_repeat Simple_repeat 2 29 0 3006 101 12 0 chr4 16098723 16099140 -186229207 + MER83 LTR ERV1 1 422 -26 316 249 18 91 chr4 16099159 16099324 -186229023 - L1ME4a LINE L1 -439 5682 5530 1988 110 0 15 chr4 16099748 16100020 -186228327 + AluSq SINE Alu 1 268 -45 266 276 121 29 chr4 16101616 16101790 -186226557 + L1ME LINE L1 5477 5666 -500 1186 265 122 3 chr4 16101798 16102160 -186226187 - MLT1I LTR MaLR -2 407 3 284 260 53 65 chr4 16102170 16102339 -186226008 + L1ME LINE L1 5687 5853 -268 22 0 0 0 chr4 16102794 16102816 -186225531 + AT_rich Low_complexity Low_complexity 1 22 0 2019 161 0 0 chr4 16102824 16103135 -186225212 + AluSx SINE Alu 1 311 -1 678 313 16 0 chr4 16103156 16103338 -186225009 + MIR SINE MIR 4 188 -74 2158 88 81 0 chr4 16103344 16103629 -186224718 + AluSc SINE Alu 1 308 -1 343 324 97 0 chr4 16104705 16104850 -186223497 - MIR SINE MIR -4 258 100 3480 131 63 0 chr4 16105672 16105738 -186222609 + L1MA6 LINE L1 5707 5767 -533 2227 129 0 0 chr4 16105738 16106040 -186222307 + AluSx SINE Alu 1 302 -10 3480 131 63 0 chr4 16106040 16106532 -186221815 + L1MA6 LINE L1 5767 6300 0 21 0 0 0 chr4 16106532 16106553 -186221794 + AT_rich Low_complexity Low_complexity 1 21 0 1607 177 25 7 chr4 16106560 16106843 -186221504 + AluJo SINE Alu 1 288 -24 189 0 0 0 chr4 16106861 16106882 -186221465 + (TAAA)n Simple_repeat Simple_repeat 4 24 0 1112 258 123 47 chr4 16107367 16107899 -186220448 + L2 LINE L2 2741 3313 0 1956 139 3 7 chr4 16107936 16108231 -186220116 - AluSx SINE Alu -18 294 1 277 282 161 32 chr4 16108597 16108721 -186219626 + MIR SINE MIR 13 152 -110 637 208 161 10 chr4 16108721 16108888 -186219459 + MIR SINE MIR 3 190 -36 245 207 46 0 chr4 16108888 16108975 -186219372 + L1MC4 LINE L1 6613 6703 -1339 216 0 0 0 chr4 16108975 16108999 -186219348 + (GA)n Simple_repeat Simple_repeat 2 25 0 193 272 25 37 chr4 16109063 16109144 -186219203 + MIR SINE MIR 157 236 -26 461 282 43 31 chr4 16109613 16109776 -186218571 + MIR SINE MIR 48 212 -50 253 343 105 19 chr4 16109917 16110022 -186218325 + L2 LINE L2 3151 3264 -8 2011 144 150 5 chr4 16110647 16111021 -186217326 + MSTA LTR MaLR 1 428 0 226 230 40 27 chr4 16112285 16112433 -186215914 + (CA)n Simple_repeat Simple_repeat 1 150 0 233 250 41 23 chr4 16112694 16112866 -186215481 + (CA)n Simple_repeat Simple_repeat 1 175 0 320 234 19 32 chr4 16113042 16113200 -186215147 + (CA)n Simple_repeat Simple_repeat 2 157 0 27 29 0 0 chr4 16113580 16113614 -186214733 + GC_rich Low_complexity Low_complexity 1 34 0 207 152 0 0 chr4 16113614 16113660 -186214687 + (CAG)n Simple_repeat Simple_repeat 1 46 0 1685 149 6 37 chr4 16113844 16114166 -186214181 + AluJb SINE Alu 1 312 0 270 316 53 45 chr4 16114412 16114525 -186213822 - MIR SINE MIR -45 217 101 1667 207 30 9 chr4 16114525 16114859 -186213488 - MER2 DNA MER2_type -3 341 1 270 316 53 45 chr4 16114859 16114878 -186213469 - MIR SINE MIR -161 101 84 2496 60 0 0 chr4 16114937 16115236 -186213111 + AluY SINE Alu 1 299 -12 358 203 14 0 chr4 16115441 16115515 -186212832 - HAL1 LINE L1 -109 2398 2324 2032 113 6 30 chr4 16115515 16115869 -186212478 - MER4A LTR ERV1 0 664 261 493 75 12 50 chr4 16115869 16115949 -186212398 - MER4A LTR ERV1 -566 98 22 2020 153 67 28 chr4 16115962 16116129 -186212218 + MSTA LTR MaLR 23 182 -246 2170 82 30 33 chr4 16116129 16116433 -186211914 + AluSc SINE Alu 1 303 -6 2020 153 67 28 chr4 16116433 16116656 -186211691 + MSTA LTR MaLR 182 428 0 228 211 18 0 chr4 16116711 16116768 -186211579 - HAL1 LINE L1 -414 2093 2036 * 1367 84 31 0 chr4 16116763 16116954 -186211393 + THE1A-int LTR MaLR 1384 1580 0 2776 59 0 85 chr4 16116954 16117342 -186211005 + THE1A LTR MaLR 1 355 0 1370 200 100 147 chr4 16117343 16118091 -186210256 - HAL1 LINE L1 -748 1759 1065 342 45 0 0 chr4 16118091 16118135 -186210212 + (TA)n Simple_repeat Simple_repeat 1 44 0 1370 200 100 147 chr4 16118135 16118352 -186209995 - HAL1 LINE L1 -1442 1065 839 1645 107 18 14 chr4 16118387 16118676 -186209671 - THE1B LTR MaLR -1 374 1 1017 266 146 71 chr4 16118680 16118823 -186209524 - HAL1 LINE L1 -1702 805 674 2483 84 0 7 chr4 16118823 16119133 -186209214 - AluY SINE Alu -3 308 1 1017 266 146 71 chr4 16119133 16119655 -186208692 - HAL1 LINE L1 -1833 674 90 180 152 0 0 chr4 16119798 16119831 -186208516 + (TCTA)n Simple_repeat Simple_repeat 2 34 0 495 169 22 0 chr4 16119831 16119920 -186208427 + L1MC5 LINE L1 7307 7397 -564 1014 158 4 61 chr4 16119935 16120064 -186208283 - MER63 DNA MER1_type -25 1036 924 2320 91 0 3 chr4 16120064 16120362 -186207985 + AluY SINE Alu 1 297 -14 1014 158 4 61 chr4 16120362 16120460 -186207887 - MER63 DNA MER1_type -137 924 822 547 200 62 0 chr4 16120488 16120618 -186207729 + L1MB8 LINE L1 5129 5266 -880 407 69 222 0 chr4 16120620 16120692 -186207655 + MER30 DNA MER1_type 1 88 -142 295 138 103 0 chr4 16120708 16120766 -186207581 + MER30 DNA MER1_type 56 119 -111 869 246 131 21 chr4 16120784 16121121 -186207226 + MER50 LTR ERV1 12 385 -349 5415 238 13 22 chr4 16121122 16122368 -186205979 + HERVI LTR ERV1 6549 7783 -2 1315 207 151 54 chr4 16122394 16122877 -186205470 + LTR10B LTR ERV1 13 542 -5 677 224 105 6 chr4 16122897 16123244 -186205103 + L1MB8 LINE L1 5284 5939 -239 2298 210 53 14 chr4 16123660 16124146 -186204201 + MLT1D LTR MaLR 1 505 0 3528 203 69 127 chr4 16124358 16124994 -186203353 + MLT1D-int LTR MaLR 27 536 -835 334 148 0 0 chr4 16124994 16125055 -186203292 - L1MB3 LINE L1 -2 6181 6121 3528 203 69 127 chr4 16125055 16125843 -186202504 + MLT1D-int LTR MaLR 536 1368 -3 565 152 22 11 chr4 16125848 16125940 -186202407 + MLT1D LTR MaLR 5 97 -408 521 298 60 24 chr4 16125949 16126197 -186202150 - LTR40b LTR ERVL -81 381 125 218 231 0 58 chr4 16126802 16126854 -186201493 - L2 LINE L2 0 3272 3224 1773 172 0 10 chr4 16127055 16127345 -186201002 - AluJo SINE Alu -23 289 3 668 297 32 0 chr4 16127386 16127571 -186200776 + L2 LINE L2 2674 2864 -450 541 252 87 34 chr4 16127540 16127746 -186200601 + L2 LINE L2 3092 3308 -5 * 29 28 0 0 chr4 16127747 16127783 -186200564 + AT_rich Low_complexity Low_complexity 1 36 0 363 309 26 27 chr4 16128513 16128832 -186199515 - Charlie1 DNA MER1_type -843 1918 1424 383 262 63 0 chr4 16130220 16130346 -186198001 + MER112 DNA MER1_type 127 260 0 1414 216 102 63 chr4 16131153 16131690 -186196657 + MER74A LTR ERVL 1 558 0 484 299 149 9 chr4 16133443 16133664 -186194683 - L2 LINE L2 -1790 1524 1273 196 353 98 0 chr4 16133975 16134097 -186194250 + L2 LINE L2 2897 3030 -242 197 210 113 16 chr4 16134103 16134165 -186194182 - L2 LINE L2 -3 3269 3202 228 250 74 40 chr4 16134165 16134313 -186194034 + L1ME LINE L1 5768 5920 -244 230 256 13 0 chr4 16135858 16135936 -186192411 + (TA)n Simple_repeat Simple_repeat 1 79 0 2202 79 3 26 chr4 16136145 16136450 -186191897 - AluSx SINE Alu -14 298 1 650 269 120 31 chr4 16136587 16137037 -186191310 - L1MC4a LINE L1 -1786 6022 5533 26 0 0 0 chr4 16137289 16137315 -186191032 + GC_rich Low_complexity Low_complexity 1 26 0 2260 83 38 0 chr4 16137554 16137842 -186190505 + AluSc SINE Alu 1 299 -10 1845 214 88 102 chr4 16138885 16139650 -186188697 - MER21B LTR ERV1 -109 754 1 286 118 53 26 chr4 16140123 16140199 -186188148 - L1MC5 LINE L1 -55 7906 7829 612 266 36 30 chr4 16140298 16140629 -186187718 - L1MC5 LINE L1 -321 7640 7308 335 298 19 29 chr4 16140795 16140899 -186187448 - MIR3 SINE MIR -48 160 58 2306 110 0 3 chr4 16141024 16141332 -186187015 + AluSq SINE Alu 1 307 -6 2428 75 0 0 chr4 16141956 16142250 -186186097 + AluY SINE Alu 1 294 -17 21 0 0 0 chr4 16142680 16142701 -186185646 + AT_rich Low_complexity Low_complexity 1 21 0 1269 265 65 8 chr4 16142892 16143277 -186185070 + L1ME1 LINE L1 87 493 -5903 505 203 225 0 chr4 16143282 16143420 -186184927 + Tigger3(Golem) DNA MER2_type 1 169 -2860 1832 170 7 3 chr4 16143446 16143746 -186184601 - AluJb SINE Alu -11 301 1 3106 125 94 28 chr4 16143746 16144585 -186183762 + Tigger3(Golem) DNA MER2_type 296 3028 -1 2116 241 161 34 chr4 16144597 16145334 -186183013 + L1ME1 LINE L1 512 1154 -5242 822 135 0 8 chr4 16145334 16145460 -186182887 + FLAM_C SINE Alu 3 127 -6 2116 241 161 34 chr4 16145460 16145682 -186182665 + L1ME1 LINE L1 1154 1346 -5050 2430 98 0 0 chr4 16145682 16145989 -186182358 + AluSx SINE Alu 1 307 -5 2116 241 161 34 chr4 16145989 16146126 -186182221 + L1ME1 LINE L1 1346 1749 -4647 230 238 0 60 chr4 16146141 16146225 -186182122 + MER58 DNA MER1_type 37 115 -2305 649 210 97 5 chr4 16146328 16146523 -186181824 + L1ME1 LINE L1 2279 2491 -3905 936 213 82 28 chr4 16146529 16146811 -186181536 + L1ME1 LINE L1 5611 5907 -328 303 231 22 55 chr4 16147258 16147349 -186180998 + L1MC5 LINE L1 7825 7912 -49 316 135 77 0 chr4 16147361 16147413 -186180934 - Alu SINE Alu -11 291 236 1342 180 75 7 chr4 16147481 16147787 -186180560 + MER7A DNA MER2_type 13 337 -9 201 191 29 29 chr4 16148378 16148446 -186179901 + A-rich Low_complexity Low_complexity 4 71 0 2281 75 4 0 chr4 16148845 16149126 -186179221 - AluSp SINE Alu -15 298 17 207 242 30 45 chr4 16149581 16149647 -186178700 - MIR SINE MIR -10 252 188 777 155 6 25 chr4 16149896 16150057 -186178290 - L1MA7 LINE L1 -6 6285 6128 1061 178 56 5 chr4 16150070 16150267 -186178080 - AluJb SINE Alu -19 293 87 1043 127 68 14 chr4 16150267 16150487 -186177860 - L1MA7 LINE L1 -161 6130 5899 1798 168 0 3 chr4 16150487 16150785 -186177562 - AluJo SINE Alu -15 297 1 21 0 0 0 chr4 16150864 16150885 -186177462 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr4 16151220 16151249 -186177098 + AT_rich Low_complexity Low_complexity 1 29 0 2476 84 0 3 chr4 16152043 16152351 -186175996 + AluSq SINE Alu 1 307 -6 638 306 50 22 chr4 16152770 16152992 -186175355 + MIR SINE MIR 2 229 -33 403 269 29 0 chr4 16153203 16153307 -186175040 - MIR SINE MIR -28 234 128 236 239 73 73 chr4 16153367 16153476 -186174871 - MIR SINE MIR -142 120 12 187 238 0 0 chr4 16153590 16153632 -186174715 - MIR SINE MIR -4 258 217 440 290 71 7 chr4 16154416 16154571 -186173776 - MIR SINE MIR -16 246 82 1412 226 41 85 chr4 16154687 16155249 -186173098 + MLT1F LTR MaLR 6 542 0 298 235 0 0 chr4 16155257 16155325 -186173022 + MLT1J LTR MaLR 425 492 -19 207 323 0 0 chr4 16155411 16155476 -186172871 - MIR3 SINE MIR -23 185 121 * 226 202 275 0 chr4 16155467 16155576 -186172771 - MIR SINE MIR -3 259 121 2121 122 7 0 chr4 16155811 16156105 -186172242 - AluSx SINE Alu -16 296 1 295 306 0 31 chr4 16156258 16156356 -186171991 - MIR SINE MIR -68 140 46 1826 164 7 17 chr4 16156520 16156819 -186171528 + AluJo SINE Alu 1 296 -16 2852 102 39 0 chr4 16158142 16158554 -186169793 - MSTC LTR MaLR 0 428 1 331 274 186 0 chr4 16159548 16159650 -186168697 - L2 LINE L2 0 3313 3193 182 318 27 64 chr4 16159937 16160047 -186168300 + MIR SINE MIR 24 129 -133 610 256 149 5 chr4 16160098 16160293 -186168054 - MIR SINE MIR -39 223 1 251 315 45 11 chr4 16160390 16160479 -186167868 - L2 LINE L2 -19 3253 3162 752 245 90 5 chr4 16212727 16212939 -186115408 + MIR SINE MIR 30 259 -3 554 292 103 17 chr4 16213462 16213695 -186114652 - MIR SINE MIR -3 259 7 211 219 0 0 chr4 16213954 16213995 -186114352 + A-rich Low_complexity Low_complexity 5 45 0 21 0 0 0 chr4 16214858 16214879 -186113468 + AT_rich Low_complexity Low_complexity 1 21 0 374 266 81 8 chr4 16215169 16215293 -186113054 + L2 LINE L2 3181 3313 0 1763 156 0 34 chr4 16215402 16215697 -186112650 + AluJb SINE Alu 1 285 -27 234 0 0 0 chr4 16215704 16215730 -186112617 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 186 43 0 0 chr4 16215840 16215863 -186112484 + (GGAA)n Simple_repeat Simple_repeat 2 24 0 197 267 111 33 chr4 16216146 16216236 -186112111 - MIR SINE MIR -130 132 36 347 278 82 76 chr4 16216935 16217226 -186111121 + MLT1K LTR MaLR 296 588 0 274 203 54 14 chr4 16219609 16219683 -186108664 + MIR SINE MIR 72 148 -114 1848 169 10 3 chr4 16219775 16220077 -186108270 - AluJb SINE Alu -8 304 1 266 276 46 11 chr4 16220156 16220243 -186108104 - MIR SINE MIR -162 100 11 1871 151 7 10 chr4 16220852 16221143 -186107204 - AluSx SINE Alu -22 290 1 297 289 15 81 chr4 16221576 16221713 -186106634 - MIR SINE MIR -57 151 23 273 209 149 0 chr4 16221917 16221984 -186106363 + MIR SINE MIR 113 189 -73 382 264 20 47 chr4 16222610 16222758 -186105589 + MIR SINE MIR 70 213 -49 336 255 19 38 chr4 16222736 16222842 -186105505 - L2 LINE L2 0 3313 3210 * 462 261 33 61 chr4 16222984 16223229 -186105118 - L2 LINE L2 -160 3153 2916 362 205 12 12 chr4 16223235 16223318 -186105029 + MIR SINE MIR 180 262 0 449 298 20 33 chr4 16223479 16223630 -186104717 - MIR SINE MIR -75 187 39 605 237 79 91 chr4 16223665 16224158 -186104189 + L1MEd LINE L1 665 1151 -4968 599 318 28 14 chr4 16224182 16224396 -186103951 - L1ME LINE L1 -382 5739 5523 1996 111 0 0 chr4 16225720 16225991 -186102356 - AluSx SINE Alu -19 293 23 1082 207 128 20 chr4 16226304 16226696 -186101651 - L1MC5 LINE L1 -48 7913 7480 201 316 0 32 chr4 16226979 16227074 -186101273 - MIR SINE MIR -7 255 164 2226 113 6 0 chr4 16227464 16227775 -186100572 - AluSp SINE Alu 0 313 1 354 143 79 0 chr4 16227921 16227984 -186100363 - MER20 DNA MER1_type -35 184 117 2407 126 27 8 chr4 16227984 16228358 -186099989 + L1MA4 LINE L1 5915 6295 -5 2006 143 0 3 chr4 16229414 16229707 -186098640 - AluJo SINE Alu -20 292 1 22 0 0 0 chr4 16230657 16230679 -186097668 + AT_rich Low_complexity Low_complexity 1 22 0 404 217 0 0 chr4 16232969 16233038 -186095309 + MER117 DNA MER1_type 45 113 -84 1715 201 83 47 chr4 16233279 16233726 -186094621 + MLT1C LTR MaLR 1 463 -4 26 0 0 0 chr4 16234179 16234205 -186094142 + AT_rich Low_complexity Low_complexity 1 26 0 1918 116 32 25 chr4 16234211 16234495 -186093852 - AluSx SINE Alu -26 286 1 886 146 6 30 chr4 16235432 16235596 -186092751 - L1MB4 LINE L1 -6 6174 6015 519 241 28 0 chr4 16236250 16236358 -186091989 - MER5A DNA MER1_type -18 171 61 25 0 0 0 chr4 16236361 16236386 -186091961 + AT_rich Low_complexity Low_complexity 1 25 0 311 149 176 0 chr4 16236405 16236479 -186091868 + MER6 DNA MER2_type 611 697 -168 866 156 0 15 chr4 16236481 16236616 -186091731 - AluJo SINE Alu -178 134 2 419 186 14 0 chr4 16236618 16236688 -186091659 - MER5A DNA MER1_type -115 74 4 29 28 0 0 chr4 16236723 16236759 -186091588 + AT_rich Low_complexity Low_complexity 1 36 0 314 138 215 0 chr4 16237186 16237251 -186091096 - MER116 DNA Mariner -1 79 1 534 259 74 78 chr4 16237685 16237928 -186090419 + MIR SINE MIR 18 259 -3 207 286 0 0 chr4 16238118 16238167 -186090180 + MIR SINE MIR 183 231 -31 696 253 82 12 chr4 16238670 16238901 -186089446 - MIR SINE MIR 0 262 18 23 0 0 0 chr4 16239044 16239067 -186089280 + AT_rich Low_complexity Low_complexity 1 23 0 2444 42 3 14 chr4 16239067 16239355 -186088992 - L1PA6 LINE L1 -7 6147 5863 231 318 24 0 chr4 16239523 16239608 -186088739 + MER103 DNA DNA 27 113 -53 323 286 0 0 chr4 16240165 16240263 -186088084 + GA-rich Low_complexity Low_complexity 4 101 0 270 320 100 0 chr4 16240394 16240494 -186087853 - L2 LINE L2 -10 3262 3153 262 290 100 0 chr4 16240639 16240739 -186087608 - L2 LINE L2 -10 3262 3153 884 263 118 78 chr4 16241045 16242182 -186086165 + L1ME3 LINE L1 4968 6162 0 787 268 72 4 chr4 16243370 16243605 -186084742 + MIR SINE MIR 2 252 -10 24 32 0 0 chr4 16243835 16243866 -186084481 + AT_rich Low_complexity Low_complexity 1 31 0 552 323 119 31 chr4 16243947 16244536 -186083811 - L2 LINE L2 -1034 2280 1640 36 0 0 0 chr4 16245115 16245151 -186083196 + AT_rich Low_complexity Low_complexity 1 36 0 2632 49 0 0 chr4 16245263 16245571 -186082776 + AluY SINE Alu 1 308 -3 472 15 61 30 chr4 16245573 16245639 -186082708 + L1PA4 LINE L1 6088 6155 0 182 79 0 53 chr4 16245652 16245690 -186082657 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 387 350 65 38 chr4 16245718 16246009 -186082338 + L1MC4a LINE L1 5613 5911 -1897 277 319 76 47 chr4 16246014 16246132 -186082215 - L1ME LINE L1 -316 5854 5741 1617 163 94 4 chr4 16246132 16246409 -186081938 - AluJo SINE Alu -10 302 1 277 319 76 47 chr4 16246409 16246675 -186081672 - L1ME LINE L1 -429 5741 5450 535 242 18 8 chr4 16249088 16249232 -186079115 + MIR SINE MIR 9 151 -57 2622 45 0 10 chr4 16250783 16251093 -186077254 + AluY SINE Alu 1 307 -4 2307 98 0 0 chr4 16251103 16251400 -186076947 + AluSg1 SINE Alu 1 297 -12 474 192 10 20 chr4 16251890 16251989 -186076358 + MLT1K LTR MaLR 482 579 -9 205 290 43 14 chr4 16252236 16252305 -186076042 + L2 LINE L2 3190 3260 -12 225 0 0 0 chr4 16252328 16252353 -186075994 + (GGAA)n Simple_repeat Simple_repeat 3 27 0 2119 102 20 3 chr4 16252404 16252697 -186075650 - AluSq SINE Alu -15 298 1 1708 178 3 22 chr4 16253270 16253294 -186075053 - AluJo SINE Alu -3 309 286 255 61 0 0 chr4 16253294 16253327 -186075020 + (TATG)n Simple_repeat Simple_repeat 2 34 0 1708 178 3 22 chr4 16253327 16253617 -186074730 - AluJo SINE Alu -26 286 1 182 179 0 0 chr4 16253805 16253844 -186074503 - MIR SINE MIR -14 248 210 29 28 0 0 chr4 16255284 16255320 -186073027 + AT_rich Low_complexity Low_complexity 1 36 0 463 275 75 35 chr4 16255329 16255519 -186072828 - MIR SINE MIR -60 202 7 2595 125 5 19 chr4 16255632 16256001 -186072346 + THE1B LTR MaLR 1 364 0 10598 80 98 3 chr4 16256002 16257445 -186070902 + THE1B-int LTR MaLR 2 1580 0 2740 106 5 19 chr4 16257445 16257814 -186070533 + THE1B LTR MaLR 1 364 0 585 301 77 0 chr4 16257878 16258061 -186070286 - MIR SINE MIR -34 228 32 2628 43 7 0 chr4 16258287 16258592 -186069755 + AluY SINE Alu 1 307 -4 21 0 0 0 chr4 16259674 16259695 -186068652 + AT_rich Low_complexity Low_complexity 1 21 0 299 323 113 0 chr4 16259948 16260081 -186068266 + MIR SINE MIR 55 202 -60 307 211 154 49 chr4 16260152 16260275 -186068072 - L2 LINE L2 -1 3271 3136 599 303 22 0 chr4 16261239 16261417 -186066930 + MIR SINE MIR 25 206 -56 200 159 0 23 chr4 16261491 16261535 -186066812 + CT-rich Low_complexity Low_complexity 2 44 0 1172 241 21 0 chr4 16262088 16262329 -186066018 + MLT1F1 LTR MaLR 6 251 -316 4456 159 58 18 chr4 16262520 16262568 -186065779 - L1MB3 LINE L1 -2 6181 6136 2038 108 31 3 chr4 16262568 16262856 -186065491 - AluSx SINE Alu -16 296 1 4456 159 58 18 chr4 16262856 16263650 -186064697 - L1MB3 LINE L1 -47 6136 5305 1930 153 0 0 chr4 16264938 16265220 -186063127 - AluJb SINE Alu -30 282 1 1410 168 158 13 chr4 16265552 16265856 -186062491 + MER7A DNA MER2_type 1 346 0 2200 112 0 0 chr4 16265962 16266256 -186062091 + AluSx SINE Alu 3 296 -16 312 324 0 0 chr4 16266913 16266987 -186061360 + MIR SINE MIR 4 77 -185 299 267 81 50 chr4 16267144 16267402 -186060945 - LTR16C LTR ERVL -2 489 224 2178 209 153 12 chr4 16267432 16267993 -186060354 + LTR48B LTR ERV1 5 644 0 2367 84 0 19 chr4 16268433 16268742 -186059605 - AluSg SINE Alu -7 303 1 651 194 31 42 chr4 16269669 16269860 -186058487 - L1M4 LINE L1 -870 5276 5088 647 270 56 26 chr4 16270407 16270640 -186057707 - MIR SINE MIR -20 242 3 585 233 57 32 chr4 16271987 16272217 -186056130 + MIR SINE MIR 24 261 -1 1607 144 8 23 chr4 16272228 16272485 -186055862 - AluJo SINE Alu -25 287 35 288 161 0 0 chr4 16273107 16273169 -186055178 + A-rich Low_complexity Low_complexity 1 62 0 210 342 69 52 chr4 16273665 16273896 -186054451 - MIR SINE MIR -16 246 12 252 269 183 11 chr4 16274295 16274388 -186053959 + MER5A DNA MER1_type 18 126 -63 481 200 0 0 chr4 16275206 16275286 -186053061 + Tigger3(Golem) DNA MER2_type 1 80 -2949 240 35 0 0 chr4 16275397 16275426 -186052921 + (TA)n Simple_repeat Simple_repeat 1 29 0 * 297 0 0 0 chr4 16275425 16275458 -186052889 + (CA)n Simple_repeat Simple_repeat 2 34 0 545 224 0 28 chr4 16275458 16275565 -186052782 + Tigger3(Golem) DNA MER2_type 2925 3028 -1 1879 197 19 8 chr4 16276089 16276460 -186051887 - L1MC1 LINE L1 -2 6331 5957 296 200 0 29 chr4 16277636 16277706 -186050641 - L1MB7 LINE L1 0 6184 6117 * 1438 201 25 0 chr4 16277679 16277963 -186050384 + L1M4 LINE L1 5302 5592 -592 402 213 57 8 chr4 16277963 16278085 -186050262 + Charlie2 DNA MER1_type 2733 2860 -2 2912 200 2 0 chr4 16278280 16278861 -186049486 - L1P LINE L1 -1316 4830 4249 416 176 22 4 chr4 16278872 16278980 -186049367 - L1P4 LINE L1 -505 5663 5558 6036 113 13 31 chr4 16278980 16280124 -186048223 + L1PA15 LINE L1 4820 5958 -207 1999 139 3 10 chr4 16280124 16280427 -186047920 + AluSx SINE Alu 1 301 -11 6036 113 13 31 chr4 16280427 16280629 -186047718 + L1PA15 LINE L1 5958 6162 -3 971 273 94 53 chr4 16281714 16281960 -186046387 - L2 LINE L2 -2 3311 3077 1466 178 35 49 chr4 16281960 16282295 -186046052 + AluJb SINE Alu 1 331 0 971 273 94 53 chr4 16282295 16282534 -186045813 - L2 LINE L2 -236 3077 2804 1666 226 59 23 chr4 16283038 16283481 -186044866 - L2 LINE L2 -528 2786 2328 1765 198 34 26 chr4 16283482 16283828 -186044519 + L1ME1 LINE L1 4989 5346 -820 2070 140 0 3 chr4 16283828 16284128 -186044219 + AluSx SINE Alu 1 299 -13 1765 198 34 26 chr4 16284128 16284417 -186043930 + L1ME1 LINE L1 5346 5631 -535 1718 187 113 28 chr4 16284418 16284841 -186043506 - LTR2B LTR ERV1 0 490 32 2034 246 23 19 chr4 16284860 16285389 -186042958 + L1ME1 LINE L1 5629 6159 -7 1705 240 73 38 chr4 16285399 16285975 -186042372 - L2 LINE L2 -975 2339 1744 7954 174 28 25 chr4 16286937 16289644 -186038703 + L1MA4 LINE L1 2622 5349 -2216 4720 130 16 0 chr4 16289624 16290387 -186037960 + L1MA4 LINE L1 6634 7408 -311 * 444 279 175 13 chr4 16290427 16290656 -186037691 - L2 LINE L2 -9 3304 3039 * 1196 276 141 25 chr4 16290654 16291307 -186037040 + L2 LINE L2 2247 2975 -339 357 292 100 8 chr4 16291514 16291644 -186036703 - MIR SINE MIR -107 155 14 826 236 50 0 chr4 16291939 16292121 -186036226 + MLT1F1 LTR MaLR 1 191 -376 24 0 0 0 chr4 16292781 16292805 -186035542 + AT_rich Low_complexity Low_complexity 1 24 0 1434 218 32 47 chr4 16292815 16293195 -186035152 + MLT1B LTR MaLR 1 374 -16 2495 152 38 31 chr4 16293771 16294001 -186034346 - MSTB LTR MaLR -2 424 188 2265 108 0 7 chr4 16294001 16294306 -186034041 - AluSx SINE Alu -9 303 1 2495 152 38 31 chr4 16294306 16294496 -186033851 - MSTB LTR MaLR -238 188 1 367 293 69 17 chr4 16295301 16295417 -186032930 + MIR SINE MIR 31 152 -110 193 230 92 115 chr4 16295468 16295555 -186032792 - MER5B DNA MER1_type -77 101 17 244 291 162 8 chr4 16297062 16297179 -186031168 - L2 LINE L2 -2 3270 3136 291 120 359 33 chr4 16298072 16298164 -186030183 + L2 LINE L2 3192 3313 0 2341 94 3 0 chr4 16298214 16298512 -186029835 - AluSx SINE Alu -13 299 1 1415 246 109 8 chr4 16299062 16299456 -186028891 + MER57B LTR ERV1 1 434 0 2784 260 101 69 chr4 16299902 16300249 -186028098 + L2 LINE L2 1351 1685 -1628 2302 97 0 0 chr4 16300249 16300539 -186027808 - AluSg SINE Alu -20 290 1 2784 260 101 69 chr4 16300539 16300789 -186027558 + L2 LINE L2 1685 1926 -1387 2878 98 36 0 chr4 16300789 16301206 -186027141 - L1MA2 LINE L1 0 6304 5873 2784 260 101 69 chr4 16301206 16302411 -186025936 + L2 LINE L2 1926 3311 -2 195 208 69 69 chr4 16302485 16302557 -186025790 + MIR SINE MIR 170 241 -21 393 296 109 14 chr4 16303182 16303415 -186024932 - MIR SINE MIR -3 259 7 361 304 94 55 chr4 16303817 16304018 -186024329 + MIR SINE MIR 47 255 -7 216 191 64 0 chr4 16304731 16304778 -186023569 + L2 LINE L2 3262 3311 -2 405 0 0 0 chr4 16304798 16304843 -186023504 + (TA)n Simple_repeat Simple_repeat 2 46 0 369 0 0 0 chr4 16304842 16304883 -186023464 + (GA)n Simple_repeat Simple_repeat 2 42 0 * 236 337 0 12 chr4 16306006 16306089 -186022258 + HAL1 LINE L1 4 85 -2422 269 186 14 0 chr4 16306204 16306274 -186022073 + (TG)n Simple_repeat Simple_repeat 1 71 0 2003 221 50 48 chr4 16306274 16306719 -186021628 + MER74B LTR ERVL 56 504 -118 2082 176 69 19 chr4 16306719 16307094 -186021253 + MSTD LTR MaLR 3 396 0 2003 221 50 48 chr4 16307094 16307208 -186021139 + MER74B LTR ERVL 504 616 -6 231 214 0 0 chr4 16307227 16307297 -186021050 + (TG)n Simple_repeat Simple_repeat 1 70 0 1898 181 103 32 chr4 16307367 16307803 -186020544 + MLT1C LTR MaLR 1 467 0 254 224 104 0 chr4 16307962 16308029 -186020318 + HAL1 LINE L1 415 488 -2019 352 223 127 83 chr4 16308297 16308454 -186019893 + HAL1 LINE L1 1180 1343 -1164 1013 278 99 55 chr4 16308472 16309206 -186019141 + L1MEd LINE L1 396 1162 -4957 652 218 28 34 chr4 16309215 16309394 -186018953 + MIR SINE MIR 64 241 -21 264 146 0 42 chr4 16309524 16309572 -186018775 - tRNA-Lys-AAG tRNA tRNA -30 46 1 504 260 59 52 chr4 16309758 16310051 -186018296 - L1M4 LINE L1 -2171 3975 3681 4703 159 9 22 chr4 16310191 16310888 -186017459 - L1MB4 LINE L1 0 6180 5494 1945 147 0 13 chr4 16310888 16311200 -186017147 - AluSx SINE Alu -4 308 1 4703 159 9 22 chr4 16311200 16311350 -186016997 - L1MB4 LINE L1 -686 5494 5344 312 308 44 0 chr4 16311380 16311539 -186016808 - L1M4 LINE L1 -2647 3499 3334 2196 261 38 21 chr4 16311619 16312193 -186016154 + MLT1G LTR MaLR 1 584 -6 225 0 0 0 chr4 16312226 16312251 -186016096 + (TGAA)n Simple_repeat Simple_repeat 4 28 0 1917 211 12 20 chr4 16312304 16312703 -186015644 + MSTD LTR MaLR 1 396 0 1750 201 25 16 chr4 16312706 16313069 -186015278 - MLT1A2 LTR MaLR 0 374 9 1121 148 31 79 chr4 16314334 16314563 -186013784 + MER20 DNA MER1_type 2 219 0 225 0 0 0 chr4 16315451 16315476 -186012871 + (A)n Simple_repeat Simple_repeat 1 25 0 295 259 106 0 chr4 16316452 16316537 -186011810 + L2 LINE L2 3219 3312 -1 209 345 18 0 chr4 16316806 16316861 -186011486 + MIR SINE MIR 34 89 -173 384 344 30 15 chr4 16316924 16317055 -186011292 - L2 LINE L2 0 3272 3140 2292 120 34 34 chr4 16317059 16317416 -186010931 + THE1B LTR MaLR 1 357 -7 385 272 125 15 chr4 16317571 16317707 -186010640 + MIR3 SINE MIR 34 184 -24 237 146 0 0 chr4 16319148 16319196 -186009151 + (TTCA)n Simple_repeat Simple_repeat 2 49 0 350 261 130 9 chr4 16319196 16319311 -186009036 - L2 LINE L2 0 3313 3185 1126 277 81 18 chr4 16319389 16319772 -186008575 + LTR16C LTR ERVL 71 477 -14 445 259 65 0 chr4 16320592 16320731 -186007616 + MER117 DNA MER1_type 1 148 -49 283 294 29 29 chr4 16320768 16320870 -186007477 - MIR SINE MIR -72 136 35 316 143 71 0 chr4 16321062 16321118 -186007229 + MER53 DNA DNA 1 60 -129 605 174 128 0 chr4 16322355 16322464 -186005883 - FLAM_A SINE Alu -9 124 2 294 296 35 26 chr4 16322534 16322649 -186005698 - L1ME LINE L1 -376 5745 5630 865 147 71 38 chr4 16322923 16323107 -186005240 + MER20 DNA MER1_type 2 191 -28 312 285 102 29 chr4 16323787 16323924 -186004423 + MIR SINE MIR 21 167 -95 955 317 66 17 chr4 16324319 16324786 -186003561 + LTR33 LTR ERVL 32 521 0 599 0 14 0 chr4 16324916 16324987 -186003360 + (TTTTC)n Simple_repeat Simple_repeat 5 76 0 198 0 0 0 chr4 16324998 16325020 -186003327 + (T)n Simple_repeat Simple_repeat 1 22 0 4920 92 19 5 chr4 16325337 16325986 -186002361 - L1PA14 LINE L1 0 6161 5504 776 329 32 56 chr4 16326386 16326851 -186001496 + MLT1K LTR MaLR 12 465 -123 219 308 44 11 chr4 16327037 16327128 -186001219 - L2 LINE L2 -4 3309 3216 570 229 182 31 chr4 16327169 16327312 -186001035 + MIR SINE MIR 8 189 -73 1811 189 33 17 chr4 16327312 16327671 -186000676 - MLT1A1 LTR MaLR 0 365 1 570 229 182 31 chr4 16327671 16327719 -186000628 + MIR SINE MIR 189 228 -34 623 281 159 37 chr4 16328019 16328503 -185999844 - MLT1K LTR MaLR -1 587 45 350 360 48 31 chr4 16328570 16328923 -185999424 - L2 LINE L2 -557 2757 2399 2245 148 69 15 chr4 16328959 16329363 -185998984 + MSTB LTR MaLR 1 426 0 631 160 17 8 chr4 16330992 16331111 -185997236 + SVA Other Other 524 643 -743 26 30 0 0 chr4 16331186 16331219 -185997128 + AT_rich Low_complexity Low_complexity 1 33 0 263 231 110 33 chr4 16332130 16332221 -185996126 + L2 LINE L2 3171 3268 -4 2285 99 0 3 chr4 16333500 16333793 -185994554 - AluSg SINE Alu -18 292 1 654 320 26 39 chr4 16334123 16334354 -185993993 - MIR SINE MIR -11 251 24 2177 115 0 10 chr4 16334372 16334676 -185993671 - AluSx SINE Alu -11 301 1 280 291 78 19 chr4 16334772 16334827 -185993520 - MIR SINE MIR -63 145 95 2230 97 0 3 chr4 16334827 16335126 -185993221 + AluSc SINE Alu 1 298 -11 280 291 78 19 chr4 16335126 16335173 -185993174 - MIR SINE MIR -113 95 37 286 341 35 12 chr4 16335218 16335303 -185993044 + MIR SINE MIR 36 122 -86 27 100 0 0 chr4 16335466 16335556 -185992791 + AT_rich Low_complexity Low_complexity 1 90 0 21 36 0 0 chr4 16335584 16335612 -185992735 + AT_rich Low_complexity Low_complexity 1 28 0 226 313 31 0 chr4 16335913 16335977 -185992370 + MIR3 SINE MIR 89 154 -54 413 305 31 8 chr4 16336016 16336144 -185992203 + MIR3 SINE MIR 45 175 -33 209 205 0 13 chr4 16336556 16336634 -185991713 + (TCCA)n Simple_repeat Simple_repeat 4 80 0 198 286 20 0 chr4 16336645 16336694 -185991653 - L2 LINE L2 -16 3256 3207 666 208 80 71 chr4 16337593 16337805 -185990542 + MER20 DNA MER1_type 6 219 0 217 184 20 0 chr4 16337847 16337896 -185990451 + (TGAA)n Simple_repeat Simple_repeat 1 50 0 503 322 101 13 chr4 16338100 16338327 -185990020 - MIR SINE MIR -10 252 6 433 290 74 78 chr4 16339195 16339426 -185988921 + MIR SINE MIR 20 249 -13 253 283 123 0 chr4 16340283 16340495 -185987852 - L1ME LINE L1 -236 5885 5648 860 168 0 0 chr4 16342215 16342346 -185986001 + FLAM_C SINE Alu 1 131 -12 2056 142 3 0 chr4 16342838 16343134 -185985213 + AluSx SINE Alu 1 297 -15 1043 305 38 40 chr4 16343324 16343793 -185984554 + L2 LINE L2 2808 3275 -38 33 0 0 0 chr4 16344010 16344043 -185984304 + AT_rich Low_complexity Low_complexity 1 33 0 375 220 52 91 chr4 16344200 16344425 -185983922 - L1MC4a LINE L1 -1896 5912 5695 563 0 15 0 chr4 16344425 16344492 -185983855 + (TCTA)n Simple_repeat Simple_repeat 2 69 0 305 167 76 0 chr4 16344882 16344948 -185983399 - L1MB8 LINE L1 -1 6177 6107 240 194 28 0 chr4 16344950 16345022 -185983325 - L1MB7 LINE L1 -109 6075 6002 1121 183 0 0 chr4 16345055 16345230 -185983117 - AluJb SINE Alu -137 175 1 3304 147 9 63 chr4 16345639 16346324 -185982023 + L1MB3 LINE L1 5536 6183 0 327 328 170 6 chr4 16346373 16346544 -185981803 - MIR SINE MIR -32 230 32 205 254 104 30 chr4 16346956 16347023 -185981324 + L2 LINE L2 3150 3221 -92 265 296 57 0 chr4 16347219 16347307 -185981040 - MIR SINE MIR -73 135 43 234 305 24 12 chr4 16348586 16348668 -185979679 + MIR3 SINE MIR 111 193 -15 609 205 49 70 chr4 16349478 16349663 -185978684 + MER63A DNA MER1_type 29 209 -1 195 100 0 0 chr4 16349663 16349693 -185978654 + (CA)n Simple_repeat Simple_repeat 2 31 0 329 320 109 0 chr4 16349733 16349861 -185978486 - MIR SINE MIR -5 257 116 322 298 10 19 chr4 16350259 16350363 -185977984 + MER5B DNA MER1_type 76 178 0 332 344 66 27 chr4 16350468 16350651 -185977696 - L2 LINE L2 0 3272 3083 324 299 114 5 chr4 16351650 16351834 -185976513 - L2 LINE L2 -203 3069 2866 284 278 65 0 chr4 16352149 16352257 -185976090 - L2 LINE L2 -12 3260 3146 * 374 313 98 4 chr4 16352256 16352428 -185975919 - MIR3 SINE MIR -8 200 21 1356 179 54 67 chr4 16352624 16352921 -185975426 + AluJb SINE Alu 1 293 -19 23 0 0 0 chr4 16353308 16353331 -185975016 + AT_rich Low_complexity Low_complexity 1 23 0 1420 188 74 14 chr4 16353335 16353702 -185974645 - L1ME1 LINE L1 -5 6161 5773 524 250 61 28 chr4 16353737 16353917 -185974430 - MIR SINE MIR -56 206 21 295 322 26 17 chr4 16353922 16354037 -185974310 + MIR SINE MIR 136 251 -11 261 0 0 0 chr4 16354677 16354706 -185973641 + (A)n Simple_repeat Simple_repeat 1 29 0 282 280 16 127 chr4 16354787 16354976 -185973371 + MIR SINE MIR 34 201 -61 203 360 87 29 chr4 16355345 16355587 -185972760 - L2 LINE L2 -417 2897 2642 228 163 0 0 chr4 16355698 16355741 -185972606 + (TG)n Simple_repeat Simple_repeat 1 43 0 1036 257 66 28 chr4 16355927 16356398 -185971949 - L1ME4a LINE L1 -93 6028 5540 261 288 0 0 chr4 16356474 16356533 -185971814 - L3 LINE CR1 0 1577 1519 407 261 67 22 chr4 16356669 16356803 -185971544 - MIR SINE MIR -37 225 86 528 322 111 5 chr4 16356916 16357414 -185970933 - L2 LINE L2 -190 3082 2530 1327 143 179 4 chr4 16357511 16357784 -185970563 + MSTA LTR MaLR 44 364 -64 1161 201 193 4 chr4 16357784 16358038 -185970309 - AluJo SINE Alu -10 302 1 433 116 14 0 chr4 16358040 16358109 -185970238 + MSTA LTR MaLR 357 426 0 1268 216 11 0 chr4 16358109 16358382 -185969965 + L1MB5 LINE L1 5899 6174 0 24 32 0 0 chr4 16358476 16358507 -185969840 + AT_rich Low_complexity Low_complexity 1 31 0 230 372 64 11 chr4 16359011 16359199 -185969148 - MIR SINE MIR -43 219 22 * 307 296 12 0 chr4 16359194 16359275 -185969072 + L2 LINE L2 3232 3313 0 619 273 56 59 chr4 16359352 16359780 -185968567 + L1ME4a LINE L1 5516 5943 -178 755 139 9 0 chr4 16359780 16359895 -185968452 + FLAM_C SINE Alu 4 119 -14 619 273 56 59 chr4 16359895 16360042 -185968305 + L1ME4a LINE L1 5943 6089 -32 373 262 37 0 chr4 16362153 16362260 -185966087 - L2 LINE L2 0 3313 3203 200 314 146 22 chr4 16362454 16362639 -185965708 + MIR SINE MIR 43 250 -12 1635 215 77 51 chr4 16362809 16363134 -185965213 + MLT1D LTR MaLR 1 345 -160 3312 138 6 21 chr4 16363134 16363669 -185964678 - MER1A DNA MER1_type 0 527 1 1635 215 77 51 chr4 16363669 16363835 -185964512 + MLT1D LTR MaLR 345 505 0 281 305 0 12 chr4 16363898 16363980 -185964367 + MIR SINE MIR 15 95 -167 274 139 56 83 chr4 16364327 16364399 -185963948 + MIR SINE MIR 191 260 -2 503 266 91 37 chr4 16364855 16365264 -185963083 + L1ME4a LINE L1 5632 6062 -59 372 306 97 19 chr4 16365650 16365856 -185962491 - MIR SINE MIR -13 249 28 267 254 39 82 chr4 16366101 16366247 -185962100 - MER5A DNA MER1_type -37 141 4 597 171 13 26 chr4 16366529 16366659 -185961688 - MLT1A2 LTR MaLR -1 373 260 302 79 0 143 chr4 16366646 16366709 -185961638 - MLT1A2 LTR MaLR -317 57 4 * 199 307 27 13 chr4 16366711 16366786 -185961561 + MIR SINE MIR 32 107 -101 302 253 0 63 chr4 16366970 16367065 -185961282 - L1MC4 LINE L1 -1340 6702 6614 219 227 0 0 chr4 16367163 16367229 -185961118 + (TA)n Simple_repeat Simple_repeat 1 66 0 2319 80 3 32 chr4 16367234 16367546 -185960801 - AluSg SINE Alu -7 303 1 918 148 13 0 chr4 16367583 16367755 -185960592 - AluSq SINE Alu 0 307 134 304 191 0 0 chr4 16367864 16367927 -185960420 - L1MD3 LINE L1 -204 7791 7729 266 310 124 8 chr4 16368092 16368211 -185960136 + MIR SINE MIR 36 170 -58 377 212 42 8 chr4 16368546 16368664 -185959683 - L1ME4a LINE L1 -11 6110 5989 255 306 15 15 chr4 16368820 16368954 -185959393 - L1ME4a LINE L1 -321 5800 5667 569 296 119 37 chr4 16369250 16369841 -185958506 - L2 LINE L2 -2 3311 2687 462 280 66 14 chr4 16370295 16370506 -185957841 + MLT1L LTR MaLR 394 615 0 307 312 116 35 chr4 16371039 16371212 -185957135 - MIR SINE MIR -44 218 32 22 0 0 0 chr4 16371325 16371347 -185957000 + AT_rich Low_complexity Low_complexity 1 22 0 227 227 27 0 chr4 16371385 16371460 -185956887 + L1ME LINE L1 5714 5790 -331 1347 237 84 18 chr4 16371791 16372229 -185956118 + MLT1C LTR MaLR 1 467 0 2004 236 98 33 chr4 16372485 16373356 -185954991 - HAL1b LINE L1 0 1348 422 383 157 12 24 chr4 16374750 16374833 -185953514 + MLT1I LTR MaLR 328 409 0 483 359 13 35 chr4 16375479 16375710 -185952637 + MIR SINE MIR 31 256 -6 554 283 82 14 chr4 16375906 16376125 -185952222 - MIR SINE MIR -18 244 11 4422 155 8 17 chr4 16376162 16376879 -185951468 + MER50 LTR ERV1 1 711 -23 271 385 39 8 chr4 16377313 16377443 -185950904 + L2 LINE L2 3138 3271 -1 1944 125 65 40 chr4 16378289 16378642 -185949705 + THE1B LTR MaLR 1 362 -2 460 233 80 27 chr4 16378784 16378934 -185949413 + LTR16C LTR ERVL 240 397 -94 185 161 0 0 chr4 16379012 16379043 -185949304 + L2 LINE L2 3281 3311 -2 480 318 59 18 chr4 16379603 16379823 -185948524 + MIR SINE MIR 17 245 -17 2612 201 43 18 chr4 16379997 16380604 -185947743 + MER74B LTR ERVL 1 622 0 333 342 27 43 chr4 16380943 16381130 -185947217 - L1ME4a LINE L1 -94 6027 5844 972 341 59 18 chr4 16381256 16381746 -185946601 + L2 LINE L2 2804 3313 0 396 205 89 36 chr4 16381776 16381888 -185946459 - MIR SINE MIR -72 190 73 374 320 20 13 chr4 16381899 16382049 -185946298 - MER5A DNA MER1_type -1 188 38 * 420 338 13 7 chr4 16381923 16382074 -185946273 + MER5A DNA MER1_type 38 189 0 2218 125 36 31 chr4 16382218 16382577 -185945770 - THE1B LTR MaLR -3 361 1 323 183 17 0 chr4 16483966 16484026 -185844321 + MER112 DNA MER1_type 199 259 -1 1126 213 14 19 chr4 16484133 16484487 -185843860 - L1MA9 LINE L1 -11 6301 5854 21 71 0 0 chr4 16484883 16484925 -185843422 + AT_rich Low_complexity Low_complexity 1 42 0 2663 53 0 0 chr4 16485176 16485479 -185842868 - AluY SINE Alu -8 303 1 1539 212 48 8 chr4 16485577 16485931 -185842416 - L1MB8 LINE L1 0 6178 5811 445 284 31 0 chr4 16486338 16486465 -185841882 - MIR SINE MIR -13 249 119 1319 167 29 122 chr4 16486588 16486738 -185841609 + MLT1A1 LTR MaLR 1 163 -202 2273 94 0 28 chr4 16486738 16487058 -185841289 + AluSq SINE Alu 1 311 -2 1319 167 29 122 chr4 16487058 16487291 -185841056 + MLT1A1 LTR MaLR 163 348 -17 229 299 92 11 chr4 16487419 16487506 -185840841 + MLT1J LTR MaLR 105 198 -313 243 234 106 21 chr4 16487646 16487740 -185840607 + MLT1I LTR MaLR 306 407 -2 216 196 43 0 chr4 16488259 16488305 -185840042 + MIR SINE MIR 205 252 -10 234 240 108 62 chr4 16488336 16488465 -185839882 - L2 LINE L2 -40 3273 3139 1826 133 97 31 chr4 16488801 16489153 -185839194 - THE1C LTR MaLR 0 375 1 2213 84 22 16 chr4 16489162 16489482 -185838865 - THE1C-int LTR MaLR -8 1572 1251 2262 101 7 151 chr4 16489496 16489960 -185838387 - THE1C-int LTR MaLR -1183 397 1 2169 119 61 25 chr4 16489960 16490322 -185838025 - THE1C LTR MaLR 0 375 1 911 289 80 63 chr4 16490325 16490972 -185837375 - L2 LINE L2 -1008 2306 1649 1757 163 35 0 chr4 16491273 16491561 -185836786 + AluSx SINE Alu 1 298 -14 619 295 37 25 chr4 16491597 16491838 -185836509 - MIR SINE MIR 0 262 19 5130 7 20 0 chr4 16492140 16492691 -185835656 - L1PA2 LINE L1 -3 6152 5591 2937 124 7 0 chr4 16494737 16495157 -185833190 - MSTA LTR MaLR 0 428 6 722 161 97 19 chr4 16495179 16495334 -185833013 - MER58A DNA MER1_type 0 167 1 1217 93 12 0 chr4 16495448 16495609 -185832738 - AluSq SINE Alu -150 163 1 224 273 106 70 chr4 16495609 16495836 -185832511 + L2 LINE L2 2997 3231 -41 2698 257 96 12 chr4 16496354 16497271 -185831076 - L1ME3A LINE L1 -8 6162 5164 466 341 36 0 chr4 16497403 16497570 -185830777 - MIR3 SINE MIR -27 181 9 276 206 96 27 chr4 16498422 16498495 -185829852 - MER116 DNA Mariner 0 80 3 543 245 185 28 chr4 16498580 16498796 -185829551 - MIR SINE MIR -2 260 11 196 220 20 20 chr4 16499318 16499368 -185828979 - MIR SINE MIR -13 249 200 443 269 0 34 chr4 16500085 16500204 -185828143 - MIR SINE MIR -79 183 69 2462 62 3 0 chr4 16500267 16500558 -185827789 - AluSp SINE Alu -21 292 1 249 229 0 0 chr4 16500685 16500733 -185827614 + MIR SINE MIR 4 51 -211 628 289 55 12 chr4 16500768 16501024 -185827323 + LTR16C LTR ERVL 151 417 -74 1129 281 70 7 chr4 16501031 16501458 -185826889 - LTR16B LTR ERVL 0 464 11 242 213 0 0 chr4 16502471 16502518 -185825829 - MIR SINE MIR -119 143 97 281 197 30 0 chr4 16502525 16502591 -185825756 + MER53 DNA DNA 1 68 -121 244 220 64 99 chr4 16502620 16502761 -185825586 - MER53 DNA DNA -49 140 5 252 225 56 42 chr4 16502943 16503014 -185825333 + LTR16C LTR ERVL 420 491 0 * 327 307 163 48 chr4 16503014 16503381 -185824966 + LTR67 LTR ERVL 142 551 -6 308 245 93 29 chr4 16503839 16503978 -185824369 - ERVL LTR ERVL -4019 1745 1598 2224 112 0 3 chr4 16504220 16504515 -185823832 - AluSq SINE Alu -19 294 1 210 303 0 40 chr4 16504720 16504819 -185823528 + CT-rich Low_complexity Low_complexity 4 98 0 197 273 71 20 chr4 16505084 16505183 -185823164 + MIR SINE MIR 101 204 -58 297 280 43 71 chr4 16505337 16505548 -185822799 - L1MC4 LINE L1 -9 8033 7829 305 239 14 0 chr4 16505771 16505842 -185822505 + MER103 DNA DNA 31 102 -64 2436 120 53 6 chr4 16507305 16507663 -185820684 + THE1C LTR MaLR 1 375 0 3574 134 112 5 chr4 16507663 16508268 -185820079 + THE1C-int LTR MaLR 1 670 -910 249 341 81 23 chr4 16508939 16509112 -185819235 + MIR SINE MIR 23 205 -57 717 289 122 35 chr4 16510577 16510947 -185817400 - MLT1J2 LTR MaLR -16 434 33 258 279 16 0 chr4 16511102 16511163 -185817184 + MIR3 SINE MIR 127 188 -20 319 222 11 67 chr4 16511449 16511539 -185816808 + MIR3 SINE MIR 113 197 -11 1234 112 6 0 chr4 16512014 16512183 -185816164 - L1PA8 LINE L1 -14 6158 5989 376 278 108 57 chr4 16512183 16512350 -185815997 - MIR SINE MIR -72 190 12 644 288 98 74 chr4 16512567 16512987 -185815360 - MLT1J2 LTR MaLR 0 450 21 208 200 20 20 chr4 16512991 16513041 -185815306 + MIR SINE MIR 102 151 -111 184 320 52 10 chr4 16513682 16513779 -185814568 + L2 LINE L2 2873 2973 -341 39 68 0 0 chr4 16514137 16514211 -185814136 + AT_rich Low_complexity Low_complexity 1 74 0 702 324 44 3 chr4 16514717 16515010 -185813337 + LTR16A LTR ERVL 96 400 -50 651 273 89 35 chr4 16515073 16515355 -185812992 + MLT1L LTR MaLR 301 597 -18 412 274 21 0 chr4 16515652 16515747 -185812600 + LTR33 LTR ERVL 6 102 -419 1458 242 63 13 chr4 16515887 16516284 -185812063 + Charlie4a DNA MER1_type 2 418 -90 25 31 0 0 chr4 16516284 16516316 -185812031 + AT_rich Low_complexity Low_complexity 1 32 0 4482 25 0 0 chr4 16516316 16516805 -185811542 - L1PA3 LINE L1 0 6155 5667 41161 37 28 2 chr4 16516905 16521907 -185806440 - L1PA3 LINE L1 -1011 5135 1 278 274 117 45 chr4 16522009 16522188 -185806159 + LTR33 LTR ERVL 328 519 -2 242 271 0 14 chr4 16522228 16522298 -185806049 + MIR SINE MIR 83 151 -111 22 0 0 0 chr4 16522722 16522744 -185805603 + AT_rich Low_complexity Low_complexity 1 22 0 315 301 154 27 chr4 16523693 16524025 -185804322 + HAL1 LINE L1 1234 1607 -900 1905 124 19 62 chr4 16524604 16524926 -185803421 + AluSx SINE Alu 5 312 0 564 353 11 22 chr4 16525241 16525510 -185802837 - L2 LINE L2 -232 3081 2816 314 326 65 29 chr4 16525583 16525721 -185802626 + L2 LINE L2 3112 3254 -18 28 0 0 0 chr4 16526773 16526801 -185801546 + AT_rich Low_complexity Low_complexity 1 28 0 237 33 0 0 chr4 16526830 16526860 -185801487 + (TG)n Simple_repeat Simple_repeat 2 31 0 191 345 84 34 chr4 16526955 16527074 -185801273 + L2 LINE L2 2986 3110 -162 480 51 51 10 chr4 16528283 16528381 -185799966 + (TA)n Simple_repeat Simple_repeat 2 103 0 642 193 9 18 chr4 16528636 16528750 -185799597 - FLAM_A SINE Alu -20 122 10 487 146 22 34 chr4 16528756 16528845 -185799502 + L1MA5A LINE L1 6206 6293 -4 321 325 49 38 chr4 16529021 16529412 -185798935 + HAL1b LINE L1 62 456 -892 565 287 25 0 chr4 16529543 16529700 -185798647 + L1MDa LINE L1 1 161 -6379 676 138 62 28 chr4 16529742 16529887 -185798460 + L1MDa LINE L1 2387 2536 -4004 642 249 63 15 chr4 16529893 16530098 -185798249 + L1MD2 LINE L1 5927 6141 -218 564 199 55 14 chr4 16530100 16530246 -185798101 + L1MD2 LINE L1 6195 6346 -13 223 210 32 32 chr4 16530776 16530838 -185797509 + MIR SINE MIR 18 79 -183 * 657 316 146 21 chr4 16530827 16531107 -185797240 + L2 LINE L2 2837 3189 -124 1596 226 59 8 chr4 16531107 16531478 -185796869 - MLT1B LTR MaLR 0 390 1 657 316 146 21 chr4 16531478 16531621 -185796726 + L2 LINE L2 3189 3313 0 360 328 15 0 chr4 16531680 16531814 -185796533 + MIR SINE MIR 124 259 -3 678 111 37 32 chr4 16533140 16533363 -185794984 + CT-rich Low_complexity Low_complexity 1 224 0 221 283 0 0 chr4 16535042 16535088 -185793259 + L2 LINE L2 3211 3256 -16 2432 87 0 3 chr4 16535513 16535823 -185792524 - AluSc SINE Alu 0 309 1 1596 254 55 16 chr4 16536296 16536843 -185791504 + L1PB1 LINE L1 4 571 -6292 2119 198 118 4 chr4 16536848 16537358 -185790989 + L1PB1 LINE L1 609 1176 -5687 * 14529 184 19 6 chr4 16537355 16541219 -185787128 + L1PB1 LINE L1 2949 6866 -1 198 0 0 0 chr4 16541340 16541362 -185786985 + (CAAAA)n Simple_repeat Simple_repeat 1 22 0 259 355 58 24 chr4 16541465 16541565 -185786782 - L2 LINE L2 -554 2760 2665 2479 104 58 67 chr4 16541565 16541997 -185786350 - MSTA LTR MaLR 0 428 1 259 355 58 24 chr4 16541997 16542189 -185786158 - L2 LINE L2 -649 2665 2458 370 264 62 3 chr4 16542330 16542443 -185785904 + MIR SINE MIR 5 123 -85 295 240 27 0 chr4 16543045 16543120 -185785227 + GA-rich Low_complexity Low_complexity 2 78 0 332 219 144 65 chr4 16544025 16544226 -185784121 + MIR SINE MIR 15 231 -31 955 273 97 24 chr4 16544428 16544798 -185783549 - MLT1I LTR MaLR -8 401 5 181 355 86 0 chr4 16544869 16544962 -185783385 - L2 LINE L2 -3 3310 3210 530 274 91 18 chr4 16545444 16545663 -185782684 + MIR SINE MIR 24 258 -4 513 303 36 0 chr4 16546275 16546470 -185781877 - MIR SINE MIR 0 262 61 234 264 198 41 chr4 16549022 16549143 -185779204 + MIR SINE MIR 53 192 -70 213 196 0 0 chr4 16550319 16550370 -185777977 + (CAT)n Simple_repeat Simple_repeat 3 53 0 227 308 34 82 chr4 16550918 16551064 -185777283 - MIR SINE MIR -61 201 63 553 294 35 10 chr4 16551975 16552172 -185776175 - MIR3 SINE MIR -6 202 1 392 278 0 9 chr4 16552567 16552682 -185775665 + L2 LINE L2 1850 1963 -1351 577 320 150 30 chr4 16553101 16553567 -185774780 + L3 LINE CR1 967 1488 -89 2322 82 7 0 chr4 16553653 16553956 -185774391 - AluY SINE Alu -2 309 5 2305 166 78 5 chr4 16554437 16554834 -185773513 + MSTB LTR MaLR 1 426 0 319 245 31 109 chr4 16555759 16555951 -185772396 - MER69A DNA AcHobo 0 177 1 617 215 146 19 chr4 16556085 16556243 -185772104 - MLT1D LTR MaLR 0 505 328 195 349 78 36 chr4 16556602 16556768 -185771579 + L2 LINE L2 2866 3038 -275 424 315 91 0 chr4 16556898 16557063 -185771284 + MIR SINE MIR 64 243 -19 2282 121 159 5 chr4 16557654 16558025 -185770322 - MSTA LTR MaLR 0 428 1 297 0 0 0 chr4 16558282 16558315 -185770032 + (TC)n Simple_repeat Simple_repeat 1 33 0 * 342 0 0 0 chr4 16558314 16558352 -185769995 + (CA)n Simple_repeat Simple_repeat 1 38 0 447 289 40 55 chr4 16558639 16558725 -185769622 - MIR SINE MIR -17 245 159 2445 119 30 22 chr4 16558725 16559086 -185769261 + THE1B LTR MaLR 1 364 0 12367 90 8 16 chr4 16559086 16560679 -185767668 + THE1B-int LTR MaLR 1 1580 0 2390 125 30 28 chr4 16560679 16561040 -185767307 + THE1B LTR MaLR 1 362 -2 447 289 40 55 chr4 16561040 16561152 -185767195 - MIR SINE MIR -100 162 48 479 264 25 8 chr4 16561785 16561906 -185766441 - MLT1K LTR MaLR -300 288 166 1084 137 0 0 chr4 16562606 16562767 -185765580 + FRAM SINE Alu 1 40 0 511 325 67 57 chr4 16563198 16563949 -185764398 + L1ME4a LINE L1 5267 6036 -85 958 217 51 118 chr4 16563949 16564340 -185764007 - MLT1A1 LTR MaLR 0 365 1 511 325 67 57 chr4 16564340 16564369 -185763978 + L1ME4a LINE L1 6036 6063 -58 625 275 69 103 chr4 16565618 16566046 -185762301 - L2 LINE L2 -662 2652 2242 2368 79 3 10 chr4 16566046 16566350 -185761997 + AluY SINE Alu 1 302 -9 625 275 69 103 chr4 16566350 16566427 -185761920 - L2 LINE L2 -1072 2242 2164 199 241 155 0 chr4 16566452 16566510 -185761837 + MIR SINE MIR 79 145 -117 321 348 0 28 chr4 16566674 16566881 -185761466 + (TATATG)n Simple_repeat Simple_repeat 1 201 0 1993 166 61 9 chr4 16567049 16567393 -185760954 - MLT1A1 LTR MaLR -1 364 3 2064 148 35 27 chr4 16567393 16567765 -185760582 + THE1C LTR MaLR 1 375 0 2083 130 17 0 chr4 16568283 16568583 -185759764 + AluSx SINE Alu 1 305 -7 822 215 56 26 chr4 16568583 16568731 -185759616 - MLT1C LTR MaLR -7 460 303 1563 166 56 125 chr4 16568731 16569123 -185759224 - MLT1A1 LTR MaLR 0 365 1 822 215 56 26 chr4 16569123 16569169 -185759178 - MLT1C LTR MaLR -164 303 260 2082 136 0 3 chr4 16569169 16569524 -185758823 - AluSx SINE Alu 0 354 1 832 239 92 16 chr4 16569525 16569776 -185758571 - MLT1C LTR MaLR -192 275 6 186 336 29 29 chr4 16570032 16570136 -185758211 + L2 LINE L2 3210 3313 0 211 238 62 62 chr4 16570417 16570497 -185757850 - L2 LINE L2 -1 3271 3192 486 290 73 33 chr4 16570868 16571171 -185757176 - HAL1 LINE L1 0 2507 2193 498 273 19 20 chr4 16571191 16571434 -185756913 + L1 LINE L1 4811 5055 -1091 742 304 63 18 chr4 16571991 16572482 -185755865 - L1MEc LINE L1 -3323 2892 2380 251 322 73 10 chr4 16572604 16572809 -185755538 - L1MEc LINE L1 -3888 2508 2291 2928 81 44 20 chr4 16572882 16573291 -185755056 + L1MA1 LINE L1 5884 6302 0 1217 229 39 22 chr4 16574100 16574619 -185753728 + MLT1E2 LTR MaLR 1 586 -40 2650 86 11 3 chr4 16574619 16574993 -185753354 - L1PA13 LINE L1 -5 6158 5782 1217 229 39 22 chr4 16574993 16575033 -185753314 + MLT1E2 LTR MaLR 586 624 -2 8260 66 11 8 chr4 16575045 16576112 -185752235 - MER11C LTR ERVK 0 1071 1 1255 246 107 42 chr4 16576621 16577171 -185751176 + MLT1G1 LTR MaLR 1 586 -9 344 213 80 0 chr4 16577215 16577290 -185751057 - MIR SINE MIR -78 130 50 206 231 15 0 chr4 16577853 16577918 -185750429 + CT-rich Low_complexity Low_complexity 2 67 0 299 342 25 17 chr4 16578065 16578185 -185750162 - MIR3 SINE MIR -87 121 1 247 266 38 25 chr4 16578583 16578662 -185749685 - MIR SINE MIR -70 192 113 1501 257 53 7 chr4 16578731 16579163 -185749184 + MER97c DNA MER1_type? 1 452 -638 216 185 37 37 chr4 16579182 16579236 -185749111 - L2 LINE L2 -16 3297 3244 2187 152 102 78 chr4 16579283 16579696 -185748651 + MLT2B2 LTR ERVL 1 430 -85 459 0 0 0 chr4 16579696 16579747 -185748600 + (TCTA)n Simple_repeat Simple_repeat 2 52 0 2187 152 102 78 chr4 16579747 16579833 -185748514 + MLT2B2 LTR ERVL 430 512 -3 302 140 0 18 chr4 16579976 16580033 -185748314 - MLT2B1 LTR ERVL -464 56 1 192 284 45 30 chr4 16580087 16580154 -185748193 - L2 LINE L2 -241 3072 3005 929 173 0 65 chr4 16580161 16580346 -185748001 + FRAM SINE Alu 1 172 -4 525 191 0 0 chr4 16580348 16580453 -185747894 + GA-rich Low_complexity Low_complexity 4 108 0 233 303 284 37 chr4 16580486 16580975 -185747372 - L2 LINE L2 -337 2977 2368 240 35 0 0 chr4 16580980 16581009 -185747338 + (TG)n Simple_repeat Simple_repeat 1 29 0 7157 26 1 0 chr4 16581058 16581947 -185746400 - L1PA3 LINE L1 -1636 4510 3621 7468 27 16 0 chr4 16581947 16583589 -185744758 + L1PA3 LINE L1 4499 6154 -1 229 241 114 0 chr4 16583598 16583677 -185744670 - L1ME4a LINE L1 -70 6051 5964 22 0 0 0 chr4 16583681 16583703 -185744644 + AT_rich Low_complexity Low_complexity 1 22 0 468 310 99 25 chr4 16583731 16583973 -185744374 + MIR SINE MIR 3 262 0 211 333 131 0 chr4 16585552 16585651 -185742696 - MIR SINE MIR -149 113 2 217 284 171 11 chr4 16586310 16586398 -185741949 - MIR SINE MIR -149 113 12 1466 145 79 41 chr4 16586545 16586862 -185741485 + Tigger2a DNA MER2_type 1 329 -105 897 184 34 0 chr4 16587001 16587180 -185741167 - MER58A DNA MER1_type 0 224 40 22 35 0 0 chr4 16587552 16587581 -185740766 + AT_rich Low_complexity Low_complexity 1 29 0 338 380 62 4 chr4 16587600 16587826 -185740521 + L1ME4a LINE L1 3926 4164 -1982 903 149 98 102 chr4 16587837 16587927 -185740420 + MER4A LTR ERV1 1 90 -375 2388 88 3 0 chr4 16587927 16588221 -185740126 - AluSp SINE Alu -18 295 1 903 149 98 102 chr4 16588221 16588587 -185739760 + MER4A LTR ERV1 90 465 0 399 281 68 43 chr4 16588603 16588838 -185739509 + L1ME4a LINE L1 4199 4439 -1707 1457 261 53 77 chr4 16589119 16589851 -185738496 + MER21B LTR ERV1 24 738 -125 207 0 0 0 chr4 16589984 16590007 -185738340 + (T)n Simple_repeat Simple_repeat 1 23 0 380 254 186 6 chr4 16590056 16590233 -185738114 - MER46C DNA MER2_type -128 210 2 645 223 202 4 chr4 16590337 16590570 -185737777 + MER69 DNA AcHobo 501 779 -1747 1917 250 22 44 chr4 16590573 16591204 -185737143 + MLT1E3 LTR MaLR 3 619 -5 913 239 126 25 chr4 16591197 16591523 -185736824 + MER69 DNA AcHobo 764 1122 -1404 * 482 251 48 16 chr4 16591542 16591729 -185736618 + MER69 DNA AcHobo 2317 2509 -17 325 300 67 11 chr4 16591890 16592070 -185736277 + MLT1L LTR MaLR 100 289 -326 2856 71 6 11 chr4 16592313 16592679 -185735668 - THE1B LTR MaLR 0 364 1 416 283 143 30 chr4 16593087 16593557 -185734790 + L1ME4a LINE L1 5395 5917 -204 233 122 24 0 chr4 16593751 16593792 -185734555 - MLT2B2 LTR ERVL 0 515 474 418 312 7 22 chr4 16593944 16594082 -185734265 + MIR SINE MIR 44 179 -83 200 276 17 35 chr4 16594108 16594166 -185734181 - MIR SINE MIR -131 77 29 301 332 51 43 chr4 16595375 16595610 -185732737 - LTR16C LTR ERVL -10 481 245 288 253 55 44 chr4 16595880 16595971 -185732376 + LTR33 LTR ERVL 189 280 -241 1786 193 72 25 chr4 16596446 16596575 -185731772 - L1MC3 LINE L1 -1 7784 7663 2391 116 31 6 chr4 16596575 16596928 -185731419 - THE1B LTR MaLR 0 364 3 1786 193 72 25 chr4 16596928 16597284 -185731063 - L1MC3 LINE L1 -122 7663 7276 333 83 134 0 chr4 16597408 16597475 -185730872 + MLT1E1 LTR MaLR 480 654 0 972 187 15 20 chr4 16597603 16597801 -185730546 - L1MB1 LINE L1 -5 6163 5967 293 267 109 36 chr4 16597812 16598059 -185730288 + L1ME3A LINE L1 975 1239 -4880 23 0 0 0 chr4 16598125 16598148 -185730199 + AT_rich Low_complexity Low_complexity 1 23 0 2077 127 10 0 chr4 16598200 16598499 -185729848 + AluSx SINE Alu 1 302 -10 442 351 33 47 chr4 16598734 16598858 -185729489 + L1MEd LINE L1 561 685 -5434 1569 175 114 3 chr4 16598858 16599183 -185729164 - MLT1A1 LTR MaLR -4 361 1 442 351 33 47 chr4 16599183 16599417 -185728930 + L1MEd LINE L1 685 914 -5205 819 323 32 16 chr4 16599418 16600097 -185728250 + L1MEd LINE L1 2554 3243 -2886 809 202 28 0 chr4 16600103 16600281 -185728066 - MLT1B LTR MaLR 0 390 208 258 287 48 0 chr4 16600281 16600448 -185727899 + L1MEd LINE L1 4251 4425 -1704 672 144 55 106 chr4 16600448 16600533 -185727814 - MLT1B LTR MaLR -160 214 126 2339 102 7 0 chr4 16600533 16600838 -185727509 + AluSp SINE Alu 1 307 -6 672 144 55 106 chr4 16600838 16600988 -185727359 - MLT1B LTR MaLR -248 126 1 292 311 60 27 chr4 16600991 16601201 -185727146 + L1ME3A LINE L1 3240 3464 -2665 1846 159 3 29 chr4 16601201 16601510 -185726837 + AluSx SINE Alu 1 301 -11 292 311 60 27 chr4 16601510 16601598 -185726749 + L1ME3A LINE L1 3464 3548 -2581 1649 301 133 30 chr4 16601662 16601890 -185726457 + L1ME3A LINE L1 3710 3913 -2240 884 106 4 186 chr4 16601890 16602126 -185726221 + 7SK RNA RNA 1 193 0 1649 301 133 30 chr4 16602126 16602249 -185726098 + L1ME3A LINE L1 3913 4022 -2131 1988 114 53 4 chr4 16602249 16602530 -185725817 + AluSg SINE Alu 1 295 -15 1649 301 133 30 chr4 16602530 16602550 -185725797 + L1ME3A LINE L1 4022 4039 -2114 1621 172 19 113 chr4 16602550 16603027 -185725320 + MSTB1 LTR MaLR 1 432 0 1649 301 133 30 chr4 16603027 16604662 -185723685 + L1ME3A LINE L1 4039 5919 -234 6128 219 29 83 chr4 16605179 16606276 -185722071 + L1MD1 LINE L1 2693 3848 -2378 2290 86 3 3 chr4 16606276 16606577 -185721770 + AluSc SINE Alu 1 301 -8 6128 219 29 83 chr4 16606577 16607272 -185721075 + L1MD1 LINE L1 3848 4579 -1647 345 35 0 70 chr4 16607272 16607329 -185721018 + MADE1 DNA Mariner 1 53 -27 6128 219 29 83 chr4 16607329 16608435 -185719912 + L1MD1 LINE L1 4579 5483 -743 2557 102 6 0 chr4 16608435 16608788 -185719559 + THE1A LTR MaLR 1 355 0 11074 101 25 7 chr4 16608789 16610341 -185718006 + THE1A-int LTR MaLR 2 1580 0 1878 97 10 1 chr4 16610341 16610650 -185717697 + THE1A LTR MaLR 1 355 0 3719 181 9 12 chr4 16610655 16611400 -185716947 + L1MD1 LINE L1 5500 6242 0 186 279 33 0 chr4 16611633 16611694 -185716653 + L2 LINE L2 3210 3272 0 263 274 140 45 chr4 16611777 16611831 -185716516 + MIR SINE MIR 64 111 -151 2251 130 0 6 chr4 16611831 16612146 -185716201 - AluSq SINE Alu 0 313 1 263 274 140 45 chr4 16612146 16612270 -185716077 + MIR SINE MIR 111 259 -3 499 288 62 0 chr4 16612786 16612946 -185715401 + MIR SINE MIR 84 253 -9 266 293 52 20 chr4 16613032 16613147 -185715200 + MIR SINE MIR 20 123 -85 497 281 69 64 chr4 16613147 16613350 -185714997 + MIR SINE MIR 3 206 -56 190 214 0 24 chr4 16613410 16613452 -185714895 + MIR SINE MIR 197 237 -25 2572 51 3 6 chr4 16613827 16614139 -185714208 + AluY SINE Alu 1 311 0 1349 115 32 46 chr4 16614509 16614726 -185713621 + AluSg/x SINE Alu 93 306 -6 637 308 114 52 chr4 16614982 16615385 -185712962 - L2 LINE L2 -1 3312 2885 247 316 60 45 chr4 16615655 16615788 -185712559 + MIR3 SINE MIR 10 144 -64 206 215 0 15 chr4 16615887 16615952 -185712395 + A-rich Low_complexity Low_complexity 2 65 0 1772 239 76 39 chr4 16616185 16616776 -185711571 + MLT1E3 LTR MaLR 12 624 0 1965 154 61 11 chr4 16616905 16617281 -185711066 - L1MB1 LINE L1 -5 6163 5769 562 198 0 0 chr4 16617289 16617395 -185710952 - L1 LINE L1 -2475 3495 3390 1369 101 43 47 chr4 16617518 16617775 -185710572 + L1PA13 LINE L1 5906 6161 -2 3516 247 123 31 chr4 16617860 16621077 -185707270 - L1 LINE L1 -2656 3314 249 276 354 53 0 chr4 16621181 16621294 -185707053 - MIR SINE MIR -3 259 141 397 265 45 45 chr4 16621576 16621708 -185706639 + MER5B DNA MER1_type 1 132 -46 371 206 0 34 chr4 16621820 16621917 -185706430 - MLT1I LTR MaLR -4 428 319 199 348 186 19 chr4 16622603 16622813 -185705534 + L2 LINE L2 2807 3051 -221 2418 142 49 12 chr4 16622981 16623412 -185704935 - L1MB3 LINE L1 -74 6109 5663 271 191 36 24 chr4 16623656 16623740 -185704607 - L1ME3A LINE L1 -5 6165 6081 266 229 121 84 chr4 16623744 16623993 -185704354 + HAL1 LINE L1 2211 2468 -39 25 83 0 0 chr4 16623993 16624053 -185704294 + AT_rich Low_complexity Low_complexity 1 60 0 260 243 19 93 chr4 16624316 16624423 -185703924 - HAL1 LINE L1 -752 1755 1657 23 54 0 0 chr4 16625770 16625807 -185702540 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr4 16627170 16627192 -185701155 + AT_rich Low_complexity Low_complexity 1 22 0 421 215 125 35 chr4 16630311 16630455 -185697892 + MIR SINE MIR 106 262 0 349 254 52 30 chr4 16630637 16630771 -185697576 + L1MC/D LINE L1 5616 5752 -2056 377 308 104 22 chr4 16630785 16630967 -185697380 - L1MB3 LINE L1 -2342 5466 5270 316 383 8 8 chr4 16631132 16631252 -185697095 + L2 LINE L2 3146 3265 -7 200 253 12 108 chr4 16632311 16632394 -185695953 - MER5A DNA MER1_type -71 118 44 * 409 204 43 0 chr4 16632329 16632422 -185695925 + MER5B DNA MER1_type 80 176 -2 22 56 0 0 chr4 16632851 16632887 -185695460 + AT_rich Low_complexity Low_complexity 1 36 0 577 259 174 19 chr4 16633136 16633348 -185694999 - MIR SINE MIR 0 262 18 2837 265 138 25 chr4 16633995 16635144 -185693203 + L2 LINE L2 1440 2717 -597 817 289 172 32 chr4 16635175 16635850 -185692497 + L2 LINE L2 2283 3041 -231 2198 150 3 12 chr4 16636871 16637211 -185691136 - MER1B DNA MER1_type -2 337 1 304 255 261 27 chr4 16637673 16637857 -185690490 - MIR SINE MIR -16 246 20 22 35 0 0 chr4 16638869 16638898 -185689449 + AT_rich Low_complexity Low_complexity 1 29 0 279 319 202 42 chr4 16640030 16640366 -185687981 - L2 LINE L2 -340 2974 2585 2251 110 0 0 chr4 16642573 16642883 -185685464 + AluY SINE Alu 1 310 -1 2125 121 29 13 chr4 16645485 16645792 -185682555 - MER1B DNA MER1_type 0 339 28 528 258 26 5 chr4 16647117 16647311 -185681036 + L1ME3 LINE L1 2933 3130 -3016 1563 246 105 37 chr4 16647317 16649364 -185678983 + L1ME3 LINE L1 3296 5556 -606 2200 98 0 14 chr4 16649364 16649661 -185678686 + AluSq SINE Alu 1 293 -20 1563 246 105 37 chr4 16649661 16649961 -185678386 + L1ME3 LINE L1 5556 5834 -328 23 78 0 0 chr4 16650029 16650080 -185678267 + AT_rich Low_complexity Low_complexity 1 51 0 191 188 21 0 chr4 16650470 16650518 -185677829 + (TA)n Simple_repeat Simple_repeat 1 49 0 810 206 55 41 chr4 16651515 16651734 -185676613 - MER58A DNA MER1_type -2 222 1 27 49 0 0 chr4 16652159 16652200 -185676147 + AT_rich Low_complexity Low_complexity 1 41 0 2246 94 0 0 chr4 16654197 16654484 -185673863 + AluSp SINE Alu 11 297 -16 2132 105 3 0 chr4 16657012 16657307 -185671040 + AluSx SINE Alu 11 306 -6 2260 57 3 33 chr4 16658567 16658867 -185669480 - AluY SINE Alu -18 293 3 280 270 27 36 chr4 16709689 16709800 -185618547 - MIR SINE MIR -141 121 12 1062 152 31 42 chr4 16710723 16710914 -185617433 + AluJb SINE Alu 124 312 0 237 256 78 78 chr4 16711200 16711329 -185617018 + MIR3 SINE MIR 11 139 -69 578 82 15 87 chr4 16711685 16712009 -185616338 + (TA)n Simple_repeat Simple_repeat 1 300 0 2142 123 3 16 chr4 16712119 16712429 -185615918 + AluSx SINE Alu 1 306 -6 26 0 0 0 chr4 16712716 16712742 -185615605 + AT_rich Low_complexity Low_complexity 1 26 0 294 129 0 32 chr4 16712772 16712865 -185615482 + (TA)n Simple_repeat Simple_repeat 2 91 0 236 197 136 0 chr4 16712875 16712941 -185615406 - L1ME4a LINE L1 -68 6053 5979 646 155 52 9 chr4 16713148 16713264 -185615083 - L1MB7 LINE L1 -19 6165 6045 241 287 35 11 chr4 16713332 16713419 -185614928 - L1ME4a LINE L1 -2023 5785 5697 526 221 15 23 chr4 16713667 16713798 -185614549 + MIR SINE MIR 108 237 -25 208 309 25 12 chr4 16713945 16714026 -185614321 - MIR SINE MIR -113 149 68 185 321 247 0 chr4 16714236 16714317 -185614030 + L2 LINE L2 3141 3241 -31 195 231 0 0 chr4 16714659 16714698 -185613649 + L2 LINE L2 3148 3186 -86 522 343 56 16 chr4 16714754 16715060 -185613287 + L2 LINE L2 2565 2882 -432 476 266 78 53 chr4 16715108 16715352 -185612995 - MIR SINE MIR 0 262 13 196 337 130 11 chr4 16716529 16716621 -185611726 + L2 LINE L2 3153 3255 -17 210 167 0 48 chr4 16716904 16716946 -185611401 - MIR SINE MIR -9 253 214 291 154 19 0 chr4 16717206 16717258 -185611089 - MSTD LTR MaLR -49 347 295 537 200 10 0 chr4 16717336 16717436 -185610911 - MSTD LTR MaLR -293 103 3 2048 155 44 8 chr4 16717436 16717798 -185610549 + MER34C LTR ERV1 203 577 -8 910 297 81 26 chr4 16717789 16718173 -185610174 + MLT1J1 LTR MaLR 42 446 0 * 286 360 34 27 chr4 16718402 16718549 -185609798 + L2 LINE L2 2955 3102 -170 2034 168 40 0 chr4 16718695 16719022 -185609325 + MER2 DNA MER2_type 2 341 -3 277 314 12 12 chr4 16720232 16720318 -185608029 - MER5A DNA MER1_type -100 89 4 369 223 58 29 chr4 16720449 16720552 -185607795 - MER103 DNA DNA -1 165 60 389 299 186 9 chr4 16721205 16721426 -185606921 + MIR SINE MIR 3 262 0 343 189 174 15 chr4 16721437 16721569 -185606778 + L1ME4a LINE L1 5965 6117 -4 227 237 75 21 chr4 16721589 16721682 -185606665 + L1ME4a LINE L1 5991 6088 -33 305 325 46 100 chr4 16722175 16722455 -185605892 - L2 LINE L2 -4 3268 3004 1304 140 49 101 chr4 16722659 16722966 -185605381 - MER7A DNA MER2_type -57 289 1 2192 155 69 5 chr4 16722986 16723373 -185604974 - MLT2C2 LTR ERVL -49 404 11 867 278 101 32 chr4 16724877 16725577 -185602770 + L2 LINE L2 2563 3312 -1 2706 120 81 15 chr4 16725658 16726117 -185602230 - L1PA16 LINE L1 -9 6157 5669 216 227 0 0 chr4 16726831 16726875 -185601472 - L2 LINE L2 -5 3267 3224 1460 280 50 50 chr4 16727035 16727907 -185600440 - L2 LINE L2 0 3313 2436 371 225 127 42 chr4 16727937 16728079 -185600268 + MIR SINE MIR 83 236 -26 293 339 8 25 chr4 16728184 16728305 -185600042 + MIR SINE MIR 31 149 -59 857 236 22 0 chr4 16728338 16728516 -185599831 + MER58A DNA MER1_type 40 221 -3 402 68 105 6 chr4 16729228 16729390 -185598957 + (TA)n Simple_repeat Simple_repeat 2 179 0 424 78 96 13 chr4 16729415 16729718 -185598629 + (TA)n Simple_repeat Simple_repeat 1 328 0 1555 182 28 85 chr4 16729746 16730098 -185598249 - Tigger3(Golem) DNA MER2_type -2 3027 16 32 43 0 0 chr4 16730098 16730144 -185598203 + AT_rich Low_complexity Low_complexity 1 46 0 1147 214 110 18 chr4 16730173 16730454 -185597893 + MER2 DNA MER2_type 7 313 -32 266 206 0 33 chr4 16730458 16730550 -185597797 + (TATAA)n Simple_repeat Simple_repeat 5 93 0 1773 128 44 24 chr4 16730910 16731206 -185597141 - AluSx SINE Alu -10 302 1 189 0 0 0 chr4 16731265 16731286 -185597061 + (TCCA)n Simple_repeat Simple_repeat 1 21 0 1967 106 7 11 chr4 16732317 16732599 -185595748 + AluSx SINE Alu 31 311 -1 28 0 0 0 chr4 16732969 16732997 -185595350 + AT_rich Low_complexity Low_complexity 1 28 0 23 68 0 0 chr4 16733718 16733762 -185594585 + AT_rich Low_complexity Low_complexity 1 44 0 317 363 70 37 chr4 16733762 16733977 -185594370 - MIR SINE MIR -7 255 34 267 160 40 27 chr4 16733990 16734065 -185594282 + (TATATG)n Simple_repeat Simple_repeat 6 81 0 311 304 14 86 chr4 16734259 16734479 -185593868 + MIR SINE MIR 10 213 -49 621 254 36 82 chr4 16734959 16735179 -185593168 + MER63A DNA MER1_type 1 210 0 222 313 38 12 chr4 16735469 16735549 -185592798 - L2 LINE L2 -181 3091 3010 420 232 77 97 chr4 16735651 16735731 -185592616 - MIR SINE MIR -43 219 139 1324 249 135 29 chr4 16735731 16736184 -185592163 + MLT1D LTR MaLR 1 501 -4 420 232 77 97 chr4 16736184 16736310 -185592037 - MIR SINE MIR -123 139 17 4169 79 9 11 chr4 16736518 16737050 -185591297 - L1PA11 LINE L1 -2 6172 5642 323 257 37 74 chr4 16737268 16737466 -185590881 + MIR SINE MIR 30 220 -42 266 318 147 40 chr4 16738557 16738755 -185589592 - MLT1K LTR MaLR -367 221 3 220 211 0 70 chr4 16739672 16739729 -185588618 - L2 LINE L2 0 3313 3261 211 204 0 23 chr4 16740065 16740109 -185588238 + CT-rich Low_complexity Low_complexity 3 45 0 408 71 0 0 chr4 16740207 16740263 -185588084 + (GA)n Simple_repeat Simple_repeat 2 57 0 204 200 0 0 chr4 16740360 16740410 -185587937 + (TG)n Simple_repeat Simple_repeat 2 51 0 634 314 105 66 chr4 16740967 16741860 -185586487 + L1MEd LINE L1 2 929 -5190 225 239 23 79 chr4 16742082 16742172 -185586175 + MIR SINE MIR 65 148 -64 409 226 6 94 chr4 16742780 16742961 -185585386 - LTR67 LTR ERVL -21 536 372 2436 114 50 11 chr4 16743108 16743466 -185584881 - THE1C LTR MaLR -3 372 1 1269 143 24 0 chr4 16743471 16743681 -185584666 + L1MA8 LINE L1 6074 6288 -3 184 353 86 9 chr4 16743972 16744088 -185584259 + L2 LINE L2 3182 3306 -7 221 369 41 25 chr4 16744518 16744640 -185583707 - L2 LINE L2 -10 3262 3139 236 29 0 29 chr4 16744813 16744847 -185583500 + (TC)n Simple_repeat Simple_repeat 2 34 0 350 314 127 34 chr4 16745207 16745443 -185582904 - MIR SINE MIR -3 259 2 * 548 284 69 95 chr4 16745443 16746038 -185582309 - L2 LINE L2 -35 3237 2628 252 0 0 0 chr4 16746038 16746066 -185582281 + (TG)n Simple_repeat Simple_repeat 1 28 0 237 33 0 0 chr4 16746065 16746095 -185582252 + (GA)n Simple_repeat Simple_repeat 1 30 0 * 548 284 69 95 chr4 16746066 16746231 -185582116 - L2 LINE L2 -644 2628 2522 24 0 0 0 chr4 16747089 16747113 -185581234 + AT_rich Low_complexity Low_complexity 1 24 0 223 310 35 11 chr4 16747177 16747264 -185581083 + MIR SINE MIR 29 117 -145 193 320 0 13 chr4 16747269 16747347 -185581000 - MIR SINE MIR -5 257 181 226 224 66 13 chr4 16747361 16747437 -185580910 + MIR SINE MIR 151 230 -32 1367 145 19 0 chr4 16748041 16748255 -185580092 + L1PB2 LINE L1 5934 6151 0 1296 158 5 0 chr4 16748265 16748468 -185579879 + L1MC1 LINE L1 6118 6321 -12 234 220 17 0 chr4 16748608 16748667 -185579680 + (TA)n Simple_repeat Simple_repeat 2 61 0 333 0 0 0 chr4 16748667 16748704 -185579643 + (CA)n Simple_repeat Simple_repeat 2 38 0 431 256 62 8 chr4 16748886 16749015 -185579332 + MIR SINE MIR 19 154 -108 192 125 0 0 chr4 16749326 16749358 -185578989 + (TCC)n Simple_repeat Simple_repeat 3 34 0 791 292 68 0 chr4 16749450 16749669 -185578678 + MIR SINE MIR 16 249 -13 288 274 153 8 chr4 16749689 16749813 -185578534 - MIR3 SINE MIR -63 145 4 296 279 66 41 chr4 16749890 16750012 -185578335 + L2 LINE L2 3189 3313 0 996 66 0 0 chr4 16750209 16750331 -185578016 + L1PA5 LINE L1 6032 6153 -1 2986 89 18 0 chr4 16750331 16750720 -185577627 + L1PA10 LINE L1 5769 6167 -1 206 246 35 88 chr4 16751088 16751202 -185577145 - MIR SINE MIR -70 192 85 598 206 48 7 chr4 16751481 16751627 -185576720 + MIR SINE MIR 4 155 -107 258 298 70 18 chr4 16751626 16751740 -185576607 + L3 LINE CR1 1351 1470 -107 * 239 257 158 0 chr4 16751797 16751898 -185576449 - MIR3 SINE MIR -87 121 5 297 313 78 36 chr4 16751923 16752064 -185576283 - MER5B DNA MER1_type -5 173 23 2424 193 26 15 chr4 16752064 16752525 -185575822 - MLT1C LTR MaLR 0 467 2 297 313 78 36 chr4 16752525 16752549 -185575798 - MER5B DNA MER1_type -155 23 1 209 212 153 12 chr4 16752610 16752695 -185575652 - MER5A DNA MER1_type -77 112 16 22 56 0 0 chr4 16753239 16753275 -185575072 + GC_rich Low_complexity Low_complexity 1 36 0 627 200 90 0 chr4 16754308 16754463 -185573884 - MIR SINE MIR -8 254 86 305 242 75 8 chr4 16754496 16754616 -185573731 + MIR SINE MIR 65 192 -70 313 254 45 27 chr4 16754859 16754969 -185573378 + MIR3 SINE MIR 67 178 -30 423 293 62 9 chr4 16755085 16755243 -185573104 - MIR SINE MIR -62 146 19 1012 166 78 29 chr4 16755941 16756146 -185572201 + AluJo SINE Alu 58 272 -40 481 88 25 0 chr4 16756147 16756227 -185572120 + (GA)n Simple_repeat Simple_repeat 1 82 0 23 33 0 0 chr4 16756373 16756403 -185571944 + AT_rich Low_complexity Low_complexity 1 30 0 1246 55 0 0 chr4 16756483 16756628 -185571719 - L1PA10 LINE L1 0 6168 6024 2189 92 19 11 chr4 16756628 16757048 -185571299 + L1P4 LINE L1 5051 5472 -696 231 325 92 25 chr4 16757085 16757248 -185571099 - MIR SINE MIR -13 249 76 389 235 29 52 chr4 16757518 16757654 -185570693 - L2 LINE L2 0 3313 3181 606 260 166 37 chr4 16757749 16758099 -185570248 - L2 LINE L2 -905 2409 2015 1530 247 57 46 chr4 16758531 16759093 -185569254 - L1ME3 LINE L1 -1 6161 5594 667 263 35 48 chr4 16759189 16759478 -185568869 + L1ME LINE L1 5520 5804 -317 2726 10 0 0 chr4 16759931 16760224 -185568123 + AluYa5 SINE Alu 1 293 -18 1527 215 105 33 chr4 16760341 16760769 -185567578 - MLT1C LTR MaLR -3 464 6 418 264 79 14 chr4 16761480 16761620 -185566727 - L2 LINE L2 0 3313 3165 214 26 51 26 chr4 16762168 16762207 -185566140 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 12073 33 3 1 chr4 16762207 16764330 -185564017 - L1PA3 LINE L1 -9 6146 4022 858 280 116 36 chr4 16764838 16765277 -185563070 + MLT1J LTR MaLR 31 504 -7 303 279 102 57 chr4 16765578 16765861 -185562486 - L2 LINE L2 -571 2743 2448 402 21 0 0 chr4 16765928 16765975 -185562372 + (CA)n Simple_repeat Simple_repeat 2 48 0 185 244 70 81 chr4 16766055 16766141 -185562206 + L2 LINE L2 3188 3272 0 287 275 99 0 chr4 16766750 16766841 -185561506 - L3 LINE CR1 -4 1573 1474 202 237 0 105 chr4 16767094 16767170 -185561177 - L2 LINE L2 -8 3264 3197 * 995 291 109 75 chr4 16767158 16767228 -185561119 + L2 LINE L2 1916 1982 -1331 2136 131 0 0 chr4 16767228 16767519 -185560828 - AluY SINE Alu -20 291 1 995 291 109 75 chr4 16767519 16768534 -185559813 + L2 LINE L2 1982 3033 -280 373 328 59 71 chr4 16768747 16769085 -185559262 + L2 LINE L2 2924 3257 -15 341 236 304 40 chr4 16769874 16770022 -185558325 - MIR3 SINE MIR -5 203 17 318 321 0 27 chr4 16770581 16770693 -185557654 + MER5A DNA MER1_type 4 112 -77 185 259 241 18 chr4 16770828 16770940 -185557407 + L2 LINE L2 3136 3272 0 715 99 10 0 chr4 16771642 16771743 -185556604 + MER5A DNA MER1_type 9 110 -79 366 314 70 73 chr4 16772487 16772802 -185555545 - L2 LINE L2 -48 3224 2911 6271 121 72 3 chr4 16773214 16774567 -185553780 - L1PA12 LINE L1 -1 6167 4704 309 276 75 65 chr4 16774909 16775123 -185553224 + MIR SINE MIR 5 220 -42 1671 177 0 31 chr4 16775686 16776003 -185552344 + AluJb SINE Alu 4 310 -2 438 162 0 0 chr4 16776091 16776159 -185552188 - AluS SINE Alu -15 296 229 237 93 0 0 chr4 16776308 16776351 -185551996 + LTR66 LTR ERVL 394 436 -174 793 164 0 41 chr4 16777148 16777294 -185551053 + MLT1F1 LTR MaLR 426 565 -2 21 36 0 0 chr4 16777355 16777383 -185550964 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr4 16777971 16778000 -185550347 + AT_rich Low_complexity Low_complexity 1 29 0 1518 140 164 7 chr4 16779279 16779572 -185548775 + MER44D DNA MER2_type 1 609 0 1021 174 62 17 chr4 16780021 16780199 -185548148 - MER5A DNA MER1_type 0 189 4 244 300 25 25 chr4 16780216 16780296 -185548051 + MIR3 SINE MIR 98 177 -31 441 130 10 110 chr4 16783642 16783742 -185544605 - FLAM_A SINE Alu -19 123 34 2220 111 10 0 chr4 16783888 16784195 -185544152 + AluSx SINE Alu 1 310 -2 25 31 0 0 chr4 16784290 16784322 -185544025 + AT_rich Low_complexity Low_complexity 1 32 0 185 283 174 22 chr4 16785329 16785421 -185542926 + MIR3 SINE MIR 90 195 -13 643 203 31 0 chr4 16789881 16790009 -185538338 - MER58A DNA MER1_type 0 150 19 260 333 26 0 chr4 16790159 16790237 -185538110 - MIR SINE MIR -157 105 26 647 269 201 19 chr4 16791505 16791814 -185536533 + MLT1I LTR MaLR 43 407 -2 699 318 90 36 chr4 16792695 16793060 -185535287 + L2 LINE L2 2929 3313 0 341 335 39 11 chr4 16793561 16793740 -185534607 + MER117 DNA MER1_type 4 187 -10 452 192 10 0 chr4 16794287 16794386 -185533961 + CT-rich Low_complexity Low_complexity 3 102 0 582 364 77 36 chr4 16794615 16795068 -185533279 + L2 LINE L2 2278 2760 -554 2152 192 103 9 chr4 16795068 16795495 -185532852 + MLT1C LTR MaLR 1 467 0 582 364 77 36 chr4 16795495 16795602 -185532745 + L2 LINE L2 2760 2861 -453 388 301 84 0 chr4 16796005 16796148 -185532199 + MIR3 SINE MIR 19 173 -35 230 308 87 47 chr4 16797337 16797509 -185530838 - MIR SINE MIR -72 190 12 272 306 88 20 chr4 16798139 16798286 -185530061 + MLT1F LTR MaLR 114 270 -279 425 299 29 15 chr4 16799030 16799167 -185529180 - MIR3 SINE MIR -54 154 16 448 230 111 15 chr4 16799401 16799536 -185528811 + MIR3 SINE MIR 10 157 -51 231 36 0 0 chr4 16799863 16799891 -185528456 + (CA)n Simple_repeat Simple_repeat 2 29 0 306 295 98 8 chr4 16800142 16800264 -185528083 - MIR SINE MIR -2 260 128 397 222 207 14 chr4 16800570 16800811 -185527536 + MLT1F LTR MaLR 279 534 -8 1609 155 104 93 chr4 16801466 16801852 -185526495 - MLT1B LTR MaLR 0 390 1 25 0 0 0 chr4 16801870 16801895 -185526452 + AT_rich Low_complexity Low_complexity 1 25 0 1479 168 50 20 chr4 16802027 16802325 -185526022 + L1MB8 LINE L1 5867 6173 -5 235 239 0 45 chr4 16802340 16802407 -185525940 + L3 LINE CR1 1512 1575 -2 247 274 0 0 chr4 16802412 16802463 -185525884 + MIR3 SINE MIR 104 154 -54 630 260 64 52 chr4 16802535 16802785 -185525562 + MIR SINE MIR 8 260 -2 317 364 31 23 chr4 16803083 16803212 -185525135 - L2 LINE L2 -4 3268 3139 457 300 21 26 chr4 16804242 16804433 -185523914 + MIR SINE MIR 20 208 -54 2683 92 3 41 chr4 16804566 16804935 -185523412 + THE1A LTR MaLR 1 355 0 908 247 17 0 chr4 16805124 16805298 -185523049 + MER45A DNA AcHobo 1 177 -1 412 277 0 0 chr4 16805720 16805803 -185522544 + L2 LINE L2 3188 3270 -2 780 266 174 13 chr4 16806592 16806971 -185521376 - LTR16A LTR ERVL -2 448 9 1137 122 0 6 chr4 16807101 16807273 -185521074 - AluSp SINE Alu -9 304 134 201 39 0 0 chr4 16807278 16807304 -185521043 + (TTA)n Simple_repeat Simple_repeat 1 26 0 2161 97 3 7 chr4 16807304 16807586 -185520761 - AluSp SINE Alu -32 281 1 186 353 12 47 chr4 16807883 16807968 -185520379 - L2 LINE L2 0 3313 3232 22 94 0 0 chr4 16808403 16808467 -185519880 + GC_rich Low_complexity Low_complexity 1 64 0 31 0 0 0 chr4 16808527 16808558 -185519789 + GC_rich Low_complexity Low_complexity 1 31 0 333 269 113 104 chr4 16808856 16809463 -185518884 - L1M2 LINE L1 -5524 1325 603 183 42 0 0 chr4 16809463 16809487 -185518860 + (GGA)n Simple_repeat Simple_repeat 3 26 0 333 269 113 104 chr4 16809487 16809677 -185518670 - L1M2 LINE L1 -6246 603 416 26 30 0 0 chr4 16809687 16809720 -185518627 + GC_rich Low_complexity Low_complexity 1 33 0 204 135 0 0 chr4 16810098 16810135 -185518212 + (CCG)n Simple_repeat Simple_repeat 2 38 0 25 0 0 0 chr4 16811595 16811620 -185516727 + AT_rich Low_complexity Low_complexity 1 25 0 1184 227 74 65 chr4 16812994 16813452 -185514895 + L2 LINE L2 1298 1759 -1555 1373 256 128 48 chr4 16813457 16813686 -185514661 + L2 LINE L2 2290 2499 -814 14469 114 49 74 chr4 16813686 16814786 -185513561 - Tigger1 DNA MER2_type -2 2416 1290 1813 134 0 0 chr4 16814786 16815047 -185513300 + AluSx SINE Alu 27 287 -25 14469 114 49 74 chr4 16815047 16816423 -185511924 - Tigger1 DNA MER2_type -1128 1290 2 1373 256 128 48 chr4 16816423 16817122 -185511225 + L2 LINE L2 2499 3289 -24 672 348 72 19 chr4 16817728 16818199 -185510148 + L2 LINE L2 2004 2499 -815 180 274 81 0 chr4 16818260 16818322 -185510025 + L2 LINE L2 3196 3262 -10 254 192 41 27 chr4 16818347 16818420 -185509927 + GA-rich Low_complexity Low_complexity 4 77 0 392 336 58 0 chr4 16818967 16819104 -185509243 - L2 LINE L2 0 3313 3169 193 309 138 21 chr4 16819421 16819515 -185508832 - MIR SINE MIR -79 129 25 2338 164 10 5 chr4 16819627 16820029 -185508318 + L1MA7 LINE L1 5639 6042 -249 566 123 98 0 chr4 16820032 16820154 -185508193 + L1MA7 LINE L1 6158 6291 0 292 302 99 20 chr4 16821055 16821286 -185507061 + MIR3 SINE MIR 3 244 -18 284 99 0 183 chr4 16821825 16821896 -185506451 - Charlie5 DNA MER1_type 0 2617 2560 1239 184 98 34 chr4 16821896 16822162 -185506185 - AluJo SINE Alu -18 294 12 467 171 0 0 chr4 16822167 16822272 -185506075 - Charlie5 DNA MER1_type -57 2555 2451 1594 241 56 14 chr4 16822286 16822839 -185505508 - L1M4 LINE L1 -2229 3917 3342 29 47 0 0 chr4 16822839 16822882 -185505465 + AT_rich Low_complexity Low_complexity 1 43 0 611 160 11 0 chr4 16822882 16822976 -185505371 - AluJ/FLAM SINE Alu -213 99 5 3246 233 77 9 chr4 16822982 16824093 -185504254 - L1M4 LINE L1 -2793 3353 2168 836 222 126 44 chr4 16824146 16824317 -185504030 + Charlie2a DNA MER1_type 1271 1427 -1435 2116 136 0 0 chr4 16824317 16824619 -185503728 - AluSx SINE Alu -10 302 1 836 222 126 44 chr4 16824619 16824789 -185503558 + Charlie2a DNA MER1_type 1427 1640 -1222 575 192 151 16 chr4 16824803 16825048 -185503299 + Charlie2a DNA MER1_type 2512 2789 -73 250 256 12 23 chr4 16825538 16825624 -185502723 - L2 LINE L2 -8 3264 3180 253 129 48 32 chr4 16825709 16825771 -185502576 + MER116 DNA Mariner 17 79 -1 675 268 103 19 chr4 16826753 16826966 -185501381 - MIR SINE MIR -26 236 6 238 289 74 66 chr4 16827039 16827160 -185501187 - MIR SINE MIR -78 184 63 25 51 0 0 chr4 16828247 16828286 -185500061 + AT_rich Low_complexity Low_complexity 1 39 0 485 299 221 5 chr4 16828288 16828492 -185499855 - MIR SINE MIR -7 255 8 654 194 0 28 chr4 16828610 16828754 -185499593 - AluJb SINE Alu -1 311 172 189 107 0 0 chr4 16829116 16829144 -185499203 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 2085 81 50 3 chr4 16829178 16829461 -185498886 - AluY SINE Alu -15 296 1 300 342 26 48 chr4 16829508 16829777 -185498570 - L2 LINE L2 -189 3083 2821 4140 101 28 2 chr4 16830184 16830798 -185497549 - L1PA13 LINE L1 0 6163 5534 443 294 192 0 chr4 16830828 16831005 -185497342 - MIR SINE MIR -21 241 31 598 166 19 175 chr4 16831191 16831254 -185497093 - MER5B DNA MER1_type 0 178 107 1817 171 3 3 chr4 16831254 16831563 -185496784 - AluJb SINE Alu -3 309 1 598 166 19 175 chr4 16831563 16831710 -185496637 - MER5B DNA MER1_type -71 107 1 570 233 83 22 chr4 16831715 16831895 -185496452 - MIR SINE MIR -7 255 65 32 75 0 0 chr4 16832078 16832145 -185496202 + AT_rich Low_complexity Low_complexity 1 67 0 1168 330 139 13 chr4 16832474 16833440 -185494907 + L2 LINE L2 2214 3309 -4 411 365 80 46 chr4 16833692 16834103 -185494244 - L2 LINE L2 -342 2972 2548 312 267 38 19 chr4 16834833 16834938 -185493409 + L1MC4 LINE L1 6614 6720 -1322 186 333 0 0 chr4 16835030 16835084 -185493263 - L2 LINE L2 0 3272 3219 307 246 66 74 chr4 16835133 16835255 -185493092 - MIR SINE MIR -20 242 122 1594 56 0 0 chr4 16835256 16835454 -185492893 + L1PA7 LINE L1 5946 6143 -11 216 323 77 31 chr4 16835883 16836013 -185492334 + MIR SINE MIR 77 212 -50 240 286 71 0 chr4 16836124 16836180 -185492167 + L2 LINE L2 3203 3262 -10 4662 192 58 141 chr4 16836936 16837223 -185491124 + L1MC/D LINE L1 19 328 -6212 219 36 0 0 chr4 16837223 16837251 -185491096 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 4662 192 58 141 chr4 16837251 16838611 -185489736 + L1MC/D LINE L1 328 1530 -5010 2372 234 76 6 chr4 16838724 16839513 -185488834 + L1MC/D LINE L1 3043 3886 -2654 1772 143 138 22 chr4 16839523 16839894 -185488453 + MSTA LTR MaLR 15 428 0 3496 239 27 67 chr4 16839895 16841310 -185487037 + L1MC/D LINE L1 3897 5254 -1286 1322 215 60 1 chr4 16841321 16841743 -185486604 - L1M4 LINE L1 -823 5323 4855 * 1865 222 37 7 chr4 16841727 16842550 -185485797 + L1MC/D LINE L1 5248 6184 -569 269 287 98 41 chr4 16842630 16842752 -185485595 - MIR SINE MIR -108 154 26 214 313 141 0 chr4 16843972 16844100 -185484247 + L2 LINE L2 3168 3313 0 229 220 99 44 chr4 16844145 16844236 -185484111 - L1ME LINE L1 -480 5641 5546 242 320 56 56 chr4 16844419 16844653 -185483694 + MLT1K LTR MaLR 137 370 -218 341 346 76 17 chr4 16844927 16845355 -185482992 - L1ME LINE L1 -611 5567 5122 269 273 151 0 chr4 16845470 16845609 -185482738 - MIR SINE MIR -32 230 71 1677 132 148 28 chr4 16845640 16845965 -185482382 + THE1B LTR MaLR 1 364 0 1168 287 54 52 chr4 16847213 16847676 -185480671 + LTR16B LTR ERVL 1 464 0 763 255 48 5 chr4 16847844 16848032 -185480315 - MIR SINE MIR -10 252 57 243 169 52 7 chr4 16848299 16848453 -185479894 + (TA)n Simple_repeat Simple_repeat 2 162 0 319 204 151 43 chr4 16848581 16848674 -185479673 - MLT1E2 LTR MaLR -413 213 111 301 270 121 11 chr4 16848860 16849034 -185479313 - L1ME LINE L1 -1821 4325 4133 21 36 0 0 chr4 16849131 16849159 -185479188 + AT_rich Low_complexity Low_complexity 1 28 0 3267 267 99 53 chr4 16849394 16850101 -185478246 - HAL1 LINE L1 -112 2395 1722 1163 154 10 5 chr4 16850101 16850309 -185478038 + L1PA14 LINE L1 5951 6159 -2 3267 267 99 53 chr4 16850309 16851625 -185476722 - HAL1 LINE L1 -785 1722 279 2095 138 0 0 chr4 16852166 16852462 -185475885 - AluSx SINE Alu -16 296 1 312 323 105 23 chr4 16853354 16853487 -185474860 - L2 LINE L2 -5 3267 3124 343 300 45 0 chr4 16853531 16853641 -185474706 + MIR SINE MIR 44 158 -104 2506 156 2 38 chr4 16853705 16854153 -185474194 + Tigger2a DNA MER2_type 3 434 0 245 253 0 10 chr4 16854153 16854252 -185474095 + (TA)n Simple_repeat Simple_repeat 1 98 0 211 302 47 0 chr4 16854278 16854364 -185473983 + MIR SINE MIR 173 262 0 224 325 12 24 chr4 16854410 16854493 -185473854 + MIR SINE MIR 12 93 -169 1008 196 0 0 chr4 16854562 16854725 -185473622 - FAM SINE Alu -12 163 1 184 110 79 39 chr4 16854845 16854972 -185473375 + (TTATA)n Simple_repeat Simple_repeat 5 136 0 23 0 0 0 chr4 16854987 16855010 -185473337 + AT_rich Low_complexity Low_complexity 1 23 0 933 248 95 111 chr4 16855629 16856072 -185472275 - MLT1J2 LTR MaLR -8 442 3 189 107 0 0 chr4 16856184 16856212 -185472135 + (TG)n Simple_repeat Simple_repeat 2 29 0 655 75 69 0 chr4 16856212 16856371 -185471976 + (TA)n Simple_repeat Simple_repeat 2 171 0 227 381 71 32 chr4 16856680 16857058 -185471289 - L2 LINE L2 -579 2735 2343 914 86 31 99 chr4 16857340 16857451 -185470896 + MLT2A2 LTR ERVL 303 402 -51 1884 155 4 0 chr4 16857451 16857782 -185470565 + AluSx SINE Alu 4 335 0 914 86 31 99 chr4 16857782 16857831 -185470516 + MLT2A2 LTR ERVL 402 453 0 1710 237 99 21 chr4 16857875 16858353 -185469994 + MLT1E2 LTR MaLR 111 467 0 490 336 75 50 chr4 16858396 16858905 -185469442 - L2 LINE L2 -88 3225 2699 57 0 0 0 chr4 16859014 16859071 -185469276 + AT_rich Low_complexity Low_complexity 1 57 0 348 217 43 11 chr4 16859073 16859165 -185469182 + L1MC4 LINE L1 6609 6703 -1339 33 25 0 0 chr4 16859172 16859212 -185469135 + AT_rich Low_complexity Low_complexity 1 40 0 201 329 96 0 chr4 16859372 16859445 -185468902 - L3 LINE CR1 -1318 259 180 21 82 0 0 chr4 16859606 16859655 -185468692 + AT_rich Low_complexity Low_complexity 1 49 0 1462 296 105 13 chr4 16859724 16860331 -185468016 - L2 LINE L2 -666 2648 1986 272 311 50 50 chr4 16860379 16860498 -185467849 - MIR SINE MIR -74 188 70 1806 166 41 43 chr4 16861742 16862133 -185466214 - MLT1B LTR MaLR 0 390 1 186 301 229 54 chr4 16862148 16862314 -185466033 - L2 LINE L2 -1 3271 3077 2131 103 0 3 chr4 16863030 16863348 -185464999 - AluY SINE Alu 0 317 1 843 229 22 11 chr4 16864135 16864314 -185464033 + MSTB LTR MaLR 214 394 -32 2410 272 88 74 chr4 16864348 16866270 -185462077 + HAL1 LINE L1 450 2398 -109 664 203 0 8 chr4 16866578 16866706 -185461641 - MER119 DNA MER1_type 0 583 457 528 332 130 7 chr4 16867262 16867554 -185460793 - L3 LINE CR1 -12 1565 1238 632 205 11 46 chr4 16867732 16867918 -185460429 - MER104 DNA Tc2 0 180 1 1546 134 26 11 chr4 16867946 16868215 -185460132 - L1PB1 LINE L1 -1 6150 5878 371 20 0 20 chr4 16868269 16868318 -185460029 + (TG)n Simple_repeat Simple_repeat 2 49 0 907 249 65 49 chr4 16868403 16868909 -185459438 + HAL1b LINE L1 658 1171 -177 2966 214 22 17 chr4 16868928 16869563 -185458784 + MER82 DNA MER2_type 16 653 0 209 0 98 0 chr4 17071144 17071185 -185257162 + (TAATG)n Simple_repeat Simple_repeat 1 45 0 211 256 275 25 chr4 17071705 17071865 -185256482 + MIR3 SINE MIR 2 201 -7 257 370 84 33 chr4 17072012 17072371 -185255976 - L2 LINE L2 -6 3266 2890 388 275 174 0 chr4 17073792 17073941 -185254406 + MIR SINE MIR 20 194 -68 251 323 55 92 chr4 17073943 17074107 -185254240 - L2 LINE L2 0 3272 3115 251 325 86 60 chr4 17074347 17074744 -185253603 - L2 LINE L2 -584 2730 2324 376 262 271 21 chr4 17075416 17075752 -185252595 - L2 LINE L2 -985 2329 1910 253 371 57 0 chr4 17076598 17076703 -185251644 - L2 LINE L2 -20 3252 3142 2344 111 19 33 chr4 17078642 17079010 -185249337 + THE1B LTR MaLR 1 363 -1 276 175 48 0 chr4 17079064 17079127 -185249220 - L1MC4a LINE L1 -1781 6027 5962 284 0 28 0 chr4 17079127 17079163 -185249184 + (TA)n Simple_repeat Simple_repeat 2 38 0 786 251 34 17 chr4 17079397 17079636 -185248711 - L1MC4a LINE L1 -1889 5919 5677 255 295 29 9 chr4 17080857 17080962 -185247385 + MER51-int LTR ERV1 7043 7149 -667 414 220 34 14 chr4 17081307 17081449 -185246898 + MER93b LTR ERV1 61 214 -188 1243 180 3 95 chr4 17081466 17081760 -185246587 - AluJo SINE Alu -16 296 30 682 189 31 19 chr4 17081764 17081923 -185246424 + MER93a LTR ERV1 242 402 0 1696 172 31 3 chr4 17082053 17082343 -185246004 - AluJb SINE Alu -14 298 1 3127 87 21 7 chr4 17082777 17083214 -185245133 - MLT2A1 LTR ERVL -1 443 1 589 294 70 14 chr4 17083525 17083739 -185244608 + MIR SINE MIR 37 262 0 183 319 106 9 chr4 17083733 17083846 -185244501 + L2 LINE L2 2611 2734 -580 * 210 292 67 50 chr4 17083981 17084101 -185244246 + L2 LINE L2 2943 3064 -208 2271 107 0 0 chr4 17084508 17084834 -185243513 - AluSx SINE Alu 0 326 1 852 227 64 55 chr4 17085158 17085519 -185242828 - LTR16A1 LTR ERVL 0 457 94 286 361 161 4 chr4 17087592 17087822 -185240525 - L2 LINE L2 -562 2752 2487 252 363 50 61 chr4 17088845 17089097 -185239250 + L2 LINE L2 1851 2099 -1215 2549 59 0 0 chr4 17089097 17089402 -185238945 - AluY SINE Alu -6 305 1 252 363 50 61 chr4 17089402 17089526 -185238821 + L2 LINE L2 2099 2223 -1091 209 169 13 52 chr4 17089704 17089781 -185238566 + (CATATA)n Simple_repeat Simple_repeat 1 74 0 231 315 22 22 chr4 17089802 17089894 -185238453 + MER5B DNA MER1_type 57 148 -30 644 140 9 0 chr4 17089906 17090013 -185238334 - L1PB1 LINE L1 -5 6146 6039 444 378 36 49 chr4 17090062 17090539 -185237808 + L2 LINE L2 2777 3243 -29 1425 303 143 11 chr4 17090646 17091574 -185236773 + L2 LINE L2 2232 3311 -2 2072 122 0 17 chr4 17092690 17093009 -185235338 - AluSq SINE Alu 0 313 1 26 0 0 0 chr4 17093377 17093403 -185234944 + AT_rich Low_complexity Low_complexity 1 26 0 1888 159 140 8 chr4 17093419 17093797 -185234550 - MSTA LTR MaLR 0 428 1 447 243 195 12 chr4 17094770 17094939 -185233408 - MIR SINE MIR -10 252 53 503 224 0 40 chr4 17094972 17095097 -185233250 + L2 LINE L2 2210 2329 -985 611 126 176 0 chr4 17095106 17095225 -185233122 - MSTA LTR MaLR -42 386 247 836 275 222 23 chr4 17095431 17096004 -185232343 + L2 LINE L2 2637 3313 0 365 231 115 0 chr4 17096201 17096305 -185232042 - L2 LINE L2 -7 3306 3191 459 371 20 3 chr4 17096705 17096922 -185231425 + MIR SINE MIR 20 235 -27 330 182 16 41 chr4 17096927 17097048 -185231299 + (TAA)n Simple_repeat Simple_repeat 2 119 0 257 232 18 0 chr4 17097137 17097193 -185231154 + L2 LINE L2 3210 3266 -6 22 35 0 0 chr4 17098215 17098244 -185230103 + AT_rich Low_complexity Low_complexity 1 29 0 242 182 0 18 chr4 17098552 17098607 -185229740 - MLT2D LTR ERVL 0 520 467 223 174 0 0 chr4 17098610 17098656 -185229691 + (TATATG)n Simple_repeat Simple_repeat 3 48 0 345 75 0 0 chr4 17098656 17098709 -185229638 + (TCTA)n Simple_repeat Simple_repeat 2 54 0 1668 210 17 11 chr4 17098710 17099067 -185229280 - MLT2D LTR ERVL -55 359 1 236 217 152 11 chr4 17099114 17099206 -185229141 + L3 LINE CR1 1129 1233 -344 543 101 13 0 chr4 17099215 17099294 -185229053 - MADE1 DNA Mariner 0 80 1 192 77 0 0 chr4 17099919 17099945 -185228402 + (TA)n Simple_repeat Simple_repeat 2 27 0 234 130 0 0 chr4 17099959 17100005 -185228342 - LTR66 LTR ERVL -171 439 394 2402 206 106 75 chr4 17100342 17100575 -185227772 - L1ME2 LINE L1 -45 6119 5895 2195 119 3 6 chr4 17100575 17100886 -185227461 - AluSx SINE Alu 0 312 3 2402 206 106 75 chr4 17100886 17102263 -185226084 - L1ME2 LINE L1 -269 5895 4475 333 68 0 0 chr4 17102305 17102349 -185225998 + (CA)n Simple_repeat Simple_repeat 1 44 0 322 321 37 25 chr4 17103430 17103592 -185224755 - MIR3 SINE MIR -5 203 40 1798 137 23 37 chr4 17104012 17104311 -185224036 + AluSx SINE Alu 1 295 -17 22 35 0 0 chr4 17104316 17104345 -185224002 + AT_rich Low_complexity Low_complexity 1 29 0 551 264 77 34 chr4 17104726 17105233 -185223114 + L1M4 LINE L1 2786 3314 -2832 394 336 62 18 chr4 17105319 17105396 -185222951 + L1M4 LINE L1 3423 3495 -2651 291 28 0 0 chr4 17105396 17105432 -185222915 + (CA)n Simple_repeat Simple_repeat 2 37 0 394 336 62 18 chr4 17105432 17105686 -185222661 + L1M4 LINE L1 3495 3773 -2373 1203 238 32 21 chr4 17106229 17106569 -185221778 + MER87 LTR ERV1 175 518 -23 294 214 36 80 chr4 17107680 17107792 -185220555 + MARNA DNA Mariner 386 492 -94 512 295 152 9 chr4 17107921 17108131 -185220216 - MIR SINE MIR -21 241 2 259 248 56 48 chr4 17108285 17108410 -185219937 - LTR67 LTR ERVL 0 557 432 282 29 0 0 chr4 17109748 17109783 -185218564 + (TG)n Simple_repeat Simple_repeat 2 36 0 305 248 137 34 chr4 17110914 17111031 -185217316 + MIR SINE MIR 118 246 -16 1635 150 85 78 chr4 17111182 17111569 -185216778 - MLT1B LTR MaLR 0 390 1 224 215 123 15 chr4 17112026 17112091 -185216256 + L2 LINE L2 3201 3272 0 221 0 35 0 chr4 17112157 17112186 -185216161 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 1647 142 3 113 chr4 17112188 17112506 -185215841 - AluSx SINE Alu -19 283 1 385 273 91 0 chr4 17113095 17113238 -185215109 - MER58A DNA MER1_type 0 224 69 1773 170 167 14 chr4 17113762 17114133 -185214214 + MSTA LTR MaLR 1 428 0 9441 133 26 31 chr4 17114135 17115722 -185212625 + MSTA-int LTR MaLR 3 1580 0 1540 153 227 11 chr4 17115722 17116074 -185212273 + MSTA LTR MaLR 1 428 0 241 312 21 32 chr4 17116286 17116386 -185211961 - MER5A DNA MER1_type -26 163 54 291 248 89 57 chr4 17117167 17117324 -185211023 - LTR68 LTR ERV1 -578 162 1 789 211 75 20 chr4 17117613 17117812 -185210535 + MER63A DNA MER1_type 1 210 0 261 200 12 88 chr4 17117909 17117989 -185210358 + MLT1F1 LTR MaLR 44 117 -450 1025 247 32 7 chr4 17117995 17118278 -185210069 + L1MD3 LINE L1 7402 7691 -304 1481 133 70 17 chr4 17118808 17119108 -185209239 + MER49 LTR ERV1 1 316 -607 851 169 0 0 chr4 17119162 17119292 -185209055 - FLAM_C SINE Alu -12 131 2 3054 168 61 5 chr4 17119296 17119885 -185208462 + MER49 LTR ERV1 302 923 0 1767 137 4 0 chr4 17120736 17120991 -185207356 + MLT1C LTR MaLR 26 281 -186 2212 137 73 17 chr4 17120992 17121336 -185207011 + THE1B LTR MaLR 1 363 -1 8959 91 130 43 chr4 17121338 17122746 -185205601 + THE1B-int LTR MaLR 2 1531 -49 1008 188 66 5 chr4 17122746 17122787 -185205560 + MLT1C LTR MaLR 255 292 -175 1771 126 124 78 chr4 17122787 17123135 -185205212 + THE1B LTR MaLR 1 364 0 1008 188 66 5 chr4 17123135 17123309 -185205038 + MLT1C LTR MaLR 292 459 -8 755 301 93 43 chr4 17123916 17124606 -185203741 + L1M4 LINE L1 3840 4605 -1541 2302 97 0 7 chr4 17124606 17124915 -185203432 + AluSg SINE Alu 1 307 -3 755 301 93 43 chr4 17124915 17125312 -185203035 + L1M4 LINE L1 4605 4981 -1165 1281 171 9 5 chr4 17125327 17125544 -185202803 - AluJb SINE Alu -12 300 83 235 277 102 42 chr4 17125634 17125800 -185202547 + L1P5 LINE L1 5255 5430 -721 461 295 38 4 chr4 17126630 17126840 -185201507 - MIR SINE MIR -10 252 34 242 260 13 0 chr4 17127381 17127458 -185200889 + (TG)n Simple_repeat Simple_repeat 1 78 0 21 36 0 0 chr4 17128447 17128475 -185199872 + AT_rich Low_complexity Low_complexity 1 28 0 354 269 56 24 chr4 17128598 17128766 -185199581 - MIR SINE MIR -50 212 43 620 209 104 0 chr4 17129368 17129502 -185198845 - MIR SINE MIR -1 261 114 225 264 69 35 chr4 17129556 17129605 -185198742 + MIR SINE MIR 145 200 -62 329 244 26 0 chr4 17129605 17129683 -185198664 + MER116 DNA Mariner 1 80 0 225 264 69 35 chr4 17129683 17129720 -185198627 + MIR SINE MIR 200 234 -28 180 0 0 0 chr4 17129919 17129939 -185198408 + (TTA)n Simple_repeat Simple_repeat 2 21 0 182 279 25 101 chr4 17130184 17130263 -185198084 - MIR3 SINE MIR -22 186 114 627 326 32 65 chr4 17131037 17131408 -185196939 - L2 LINE L2 0 3272 2914 753 199 0 0 chr4 17131447 17131583 -185196764 + MER58A DNA MER1_type 9 144 0 191 206 0 0 chr4 17131627 17131661 -185196686 - MIR SINE MIR -111 151 118 474 236 28 82 chr4 17132097 17132279 -185196068 - MER113 DNA MER1_type? -5 516 345 724 266 73 34 chr4 17132281 17132330 -185196017 + MIR SINE MIR 10 56 -206 2310 206 56 23 chr4 17132330 17132850 -185195497 - MLT1F LTR MaLR -4 538 2 724 266 73 34 chr4 17132850 17133033 -185195314 + MIR SINE MIR 56 251 -11 235 180 20 40 chr4 17133253 17133303 -185195044 - MER5C DNA MER1_type -269 55 7 2263 104 10 0 chr4 17134091 17134389 -185193958 + AluSq SINE Alu 1 301 -12 1132 283 113 26 chr4 17134506 17135058 -185193289 + L1MC1 LINE L1 4 565 -5480 834 297 31 0 chr4 17135155 17135414 -185192933 + L1MC1 LINE L1 569 835 -5210 * 3129 204 157 19 chr4 17135412 17135772 -185192575 + L1MC1 LINE L1 1351 1660 -4904 302 0 26 0 chr4 17135772 17135810 -185192537 + (TTTA)n Simple_repeat Simple_repeat 4 42 0 3129 204 157 19 chr4 17135810 17135827 -185192520 + L1MC1 LINE L1 1660 1673 -4891 8272 10 19 14 chr4 17135827 17136785 -185191562 - L1PA3 LINE L1 -2 6153 5195 3129 204 157 19 chr4 17136785 17136798 -185191549 + L1MC1 LINE L1 1673 1683 -4881 2082 113 0 7 chr4 17136798 17137104 -185191243 + AluSg SINE Alu 1 304 0 3129 204 157 19 chr4 17137104 17137611 -185190736 + L1MC1 LINE L1 1683 2377 -4187 4456 201 40 36 chr4 17137620 17138953 -185189394 + L1MC1 LINE L1 5406 6745 -6 748 181 93 21 chr4 17138959 17139152 -185189195 + L1MC3 LINE L1 7559 7765 -20 375 252 89 15 chr4 17139278 17139413 -185188934 - MIR SINE MIR -26 236 92 251 276 126 0 chr4 17139607 17139694 -185188653 + MIR SINE MIR 97 194 -68 201 196 0 0 chr4 17140788 17140844 -185187503 + GA-rich Low_complexity Low_complexity 2 57 0 720 158 0 0 chr4 17140846 17141017 -185187330 + (CA)n Simple_repeat Simple_repeat 2 172 0 180 135 0 0 chr4 17141062 17141099 -185187248 + (CA)n Simple_repeat Simple_repeat 2 38 0 509 185 0 6 chr4 17141126 17141188 -185187159 + (CA)n Simple_repeat Simple_repeat 2 63 -99 180 0 0 0 chr4 17141188 17141208 -185187139 + (GA)n Simple_repeat Simple_repeat 2 21 0 509 185 0 6 chr4 17141208 17141307 -185187040 + (CA)n Simple_repeat Simple_repeat 63 162 0 185 130 43 0 chr4 17141344 17141390 -185186957 + (CAGAGA)n Simple_repeat Simple_repeat 6 53 0 264 300 62 23 chr4 17141412 17141542 -185186805 + MLT1K LTR MaLR 420 554 -34 191 339 11 34 chr4 17142190 17142367 -185185980 - L2 LINE L2 -236 3036 2864 495 190 0 0 chr4 17142367 17142504 -185185843 + (TG)n Simple_repeat Simple_repeat 2 138 0 601 278 118 44 chr4 17143206 17143612 -185184735 + Charlie8 DNA MER1_type 107 542 -1875 2181 133 0 0 chr4 17143810 17144119 -185184228 - AluSx SINE Alu -3 309 1 391 235 87 60 chr4 17144380 17144466 -185183881 - MIR3 SINE MIR -5 203 110 2190 122 0 7 chr4 17144466 17144770 -185183577 + AluSx SINE Alu 1 302 -10 391 235 87 60 chr4 17144770 17144832 -185183515 - MIR3 SINE MIR -98 110 51 370 250 0 60 chr4 17144885 17144985 -185183362 + L2 LINE L2 3179 3272 0 219 326 44 15 chr4 17146921 17147056 -185181291 - MIR SINE MIR -96 166 28 254 229 0 0 chr4 17147736 17147784 -185180563 - L2 LINE L2 -12 3260 3213 619 328 124 14 chr4 17147818 17148166 -185180181 - L2 LINE L2 0 3313 2928 305 271 62 54 chr4 17148171 17148300 -185180047 - L2 LINE L2 0 3313 3184 1286 229 43 72 chr4 17148579 17148955 -185179392 + MLT1A1 LTR MaLR 1 365 0 244 325 74 35 chr4 17149110 17149313 -185179034 + MIR SINE MIR 47 257 -5 353 257 193 16 chr4 17149422 17149630 -185178717 - MIR SINE MIR -10 252 18 844 224 78 54 chr4 17150212 17150340 -185178007 - MLT1C LTR MaLR -160 307 184 2135 116 0 7 chr4 17150340 17150643 -185177704 - AluSx SINE Alu -11 301 1 844 224 78 54 chr4 17150643 17150809 -185177538 - MLT1C LTR MaLR -283 184 6 1703 156 23 44 chr4 17150858 17151254 -185177093 + L1MC3 LINE L1 7450 7990 -5 746 56 0 0 chr4 17151312 17151401 -185176946 - L1PA10 LINE L1 -9 6159 6071 186 313 0 0 chr4 17151665 17151729 -185176618 - L2 LINE L2 -289 2983 2920 549 261 25 6 chr4 17151960 17152117 -185176230 + MIR SINE MIR 102 261 -1 632 243 72 50 chr4 17152563 17152785 -185175562 + MIR SINE MIR 1 227 -35 400 375 48 8 chr4 17152958 17153209 -185175138 - L3 LINE CR1 -110 1467 1207 260 227 12 12 chr4 17154759 17154922 -185173425 + (TA)n Simple_repeat Simple_repeat 2 164 0 24 0 0 0 chr4 17155440 17155464 -185172883 + AT_rich Low_complexity Low_complexity 1 24 0 206 310 35 11 chr4 17155708 17155795 -185172552 + L2 LINE L2 3206 3294 -19 2225 99 0 10 chr4 17156769 17157072 -185171275 - AluY SINE Alu -11 300 1 1199 271 108 51 chr4 17157411 17158041 -185170306 + L1MC4a LINE L1 5315 5980 -1828 3187 171 12 10 chr4 17158056 17158575 -185169772 - MLT2B1 LTR ERVL 0 520 1 288 281 103 48 chr4 17158781 17158927 -185169420 - L2 LINE L2 -287 2985 2832 2509 120 11 25 chr4 17159566 17159933 -185168414 - THE1B LTR MaLR -2 362 1 343 342 38 13 chr4 17160002 17160160 -185168187 + MIR SINE MIR 64 225 -37 197 333 16 0 chr4 17160320 17160383 -185167964 + L2 LINE L2 3241 3304 -9 22 0 0 0 chr4 17160389 17160411 -185167936 + AT_rich Low_complexity Low_complexity 1 22 0 473 294 214 35 chr4 17161570 17161944 -185166403 + L2 LINE L2 2450 2890 -424 186 299 30 0 chr4 17162450 17162517 -185165830 + L2 LINE L2 3182 3250 -63 544 311 53 0 chr4 17162526 17162751 -185165596 + MIR SINE MIR 7 243 -19 301 314 119 63 chr4 17162830 17163082 -185165265 + L2 LINE L2 3006 3271 -1 568 271 85 17 chr4 17163333 17163510 -185164837 + MIR SINE MIR 25 213 -49 2652 291 115 37 chr4 17163540 17164210 -185164137 + HAL1 LINE L1 46 662 -1845 2195 102 3 10 chr4 17164210 17164533 -185163814 + AluSx SINE Alu 1 312 0 2652 291 115 37 chr4 17164533 17165552 -185162795 + HAL1 LINE L1 662 1868 -639 1387 247 27 28 chr4 17165560 17166274 -185162073 + L1MEc LINE L1 235 1106 -5290 478 359 89 46 chr4 17166665 17167058 -185161289 - L2 LINE L2 -36 3236 2827 265 332 89 21 chr4 17167166 17167356 -185160991 - L2 LINE L2 -685 2629 2427 387 329 107 48 chr4 17167441 17167937 -185160410 + L2 LINE L2 1196 1720 -1594 7073 138 5 15 chr4 17168481 17169598 -185158749 + HSMAR2 DNA Mariner 2 1107 -195 383 87 72 43 chr4 17169598 17169667 -185158680 - MLT1D LTR MaLR -378 127 57 324 250 14 0 chr4 17169677 17169749 -185158598 - L2 LINE L2 -9 3304 3232 1082 141 70 0 chr4 17169876 17170061 -185158286 + HSMAR2 DNA Mariner 1103 1300 -2 801 154 58 51 chr4 17170335 17170399 -185157948 - MLT1D LTR MaLR 0 505 443 180 0 0 0 chr4 17170399 17170419 -185157928 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 468 129 0 0 chr4 17170422 17170492 -185157855 - L1PA13 LINE L1 -11 6152 6083 801 154 58 51 chr4 17170492 17170579 -185157768 - MLT1D LTR MaLR -63 442 349 866 168 20 0 chr4 17170601 17170750 -185157597 - MLT1D LTR MaLR -326 179 28 212 328 225 30 chr4 17170919 17171221 -185157126 + L2 LINE L2 2910 3270 -2 508 321 23 5 chr4 17171422 17171637 -185156710 + LTR33 LTR ERVL 301 519 -2 212 288 0 41 chr4 17171768 17171841 -185156506 - MIR3 SINE MIR -3 205 136 297 240 93 0 chr4 17171957 17172032 -185156315 + MIR SINE MIR 119 200 -62 213 39 0 0 chr4 17172946 17172972 -185155375 + (TTCA)n Simple_repeat Simple_repeat 4 29 0 287 267 27 0 chr4 17172974 17173049 -185155298 - L2 LINE L2 -5 3308 3232 354 284 60 0 chr4 17173280 17173396 -185154951 + MIR SINE MIR 119 241 -21 1325 158 4 9 chr4 17173544 17173772 -185154575 + AluJb SINE Alu 86 312 0 357 24 0 0 chr4 17173916 17173958 -185154389 + (TA)n Simple_repeat Simple_repeat 2 43 0 2162 86 50 13 chr4 17173992 17174294 -185154053 + AluSp SINE Alu 1 313 0 22 0 0 0 chr4 17174340 17174362 -185153985 + AT_rich Low_complexity Low_complexity 1 22 0 1223 254 138 32 chr4 17174389 17174975 -185153372 - Charlie7 DNA MER1_type -1898 714 67 1052 275 52 27 chr4 17175138 17175607 -185152740 - L1ME3A LINE L1 -33 6137 5665 436 184 11 38 chr4 17175612 17175797 -185152550 + (TA)n Simple_repeat Simple_repeat 1 180 0 4013 270 117 36 chr4 17176274 17177286 -185151061 - L1ME3A LINE L1 -580 5584 4655 246 32 0 0 chr4 17177286 17177317 -185151030 + (TC)n Simple_repeat Simple_repeat 2 32 0 4013 270 117 36 chr4 17177317 17179290 -185149057 - L1ME3A LINE L1 -1509 4655 2329 832 165 0 0 chr4 17179290 17179423 -185148924 - FLAM_C SINE Alu 0 133 1 4013 270 117 36 chr4 17179423 17179663 -185148684 - L1ME3A LINE L1 -3835 2329 2110 796 203 71 71 chr4 17179787 17179963 -185148384 - LTR16A1 LTR ERVL -2 455 277 985 83 0 0 chr4 17179963 17180096 -185148251 - L1PA3 LINE L1 -3 6152 6020 796 203 71 71 chr4 17180096 17180185 -185148162 - LTR16A1 LTR ERVL -179 278 190 402 229 116 10 chr4 17180240 17180485 -185147862 - L1M LINE L1 -757 5389 5152 * 5450 84 18 17 chr4 17180484 17181155 -185147192 - L1PA10 LINE L1 -10 6158 5489 200 33 0 33 chr4 17181155 17181185 -185147162 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 2118 115 0 7 chr4 17181185 17181471 -185146876 - AluSq SINE Alu -27 286 3 5450 84 18 17 chr4 17181471 17181630 -185146717 - L1PA10 LINE L1 -678 5490 5326 333 322 15 63 chr4 17181660 17181865 -185146482 - L1M4 LINE L1 -1005 5141 4947 288 229 8 102 chr4 17181868 17181986 -185146361 - MLT1E2 LTR MaLR -519 107 1 1524 230 42 121 chr4 17182140 17182339 -185146008 - MLT1D-int LTR MaLR -97 1274 1061 186 43 0 0 chr4 17182339 17182362 -185145985 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1524 230 42 121 chr4 17182362 17182831 -185145516 - MLT1D-int LTR MaLR -310 1061 659 2561 213 21 42 chr4 17182892 17183565 -185144782 - MLT1D-int LTR MaLR -711 660 2 1632 202 98 5 chr4 17183569 17183979 -185144368 - MLT1D LTR MaLR -3 502 55 2199 114 7 3 chr4 17184086 17184392 -185143955 - AluSx SINE Alu -5 307 1 29 47 0 0 chr4 17184401 17184444 -185143903 + AT_rich Low_complexity Low_complexity 1 43 0 515 241 18 60 chr4 17184585 17184751 -185143596 + MIR SINE MIR 2 160 -102 187 368 0 0 chr4 17184796 17184853 -185143494 - L2 LINE L2 -91 3181 3125 219 345 97 27 chr4 17185046 17185345 -185143002 + L2 LINE L2 2468 2787 -527 747 296 200 11 chr4 17185436 17185886 -185142461 - MLT1L LTR MaLR -80 535 1 224 326 55 108 chr4 17185897 17186351 -185141996 + L2 LINE L2 2809 3238 -34 211 330 34 0 chr4 17186381 17186469 -185141878 - L2 LINE L2 -238 3034 2944 613 325 71 50 chr4 17186593 17186987 -185141360 + L2 LINE L2 2348 2759 -555 2212 99 18 0 chr4 17186987 17187265 -185141082 + AluSg SINE Alu 1 284 -21 219 36 0 0 chr4 17187265 17187293 -185141054 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 613 325 71 50 chr4 17187298 17187497 -185140850 + L2 LINE L2 2759 2953 -361 272 336 69 0 chr4 17187535 17187651 -185140696 + MIR SINE MIR 5 128 -134 420 278 176 18 chr4 17187740 17187967 -185140380 + L2 LINE L2 3028 3290 -23 197 323 61 10 chr4 17187997 17188096 -185140251 + L2 LINE L2 2763 2866 -448 432 312 66 54 chr4 17191057 17191480 -185136867 + LTR67 LTR ERVL 103 530 -27 1100 202 112 83 chr4 17191585 17192139 -185136208 - L1MC4 LINE L1 0 8042 7473 197 132 26 26 chr4 17193398 17193436 -185134911 - L2 LINE L2 -18 3295 3258 832 174 96 158 chr4 17193544 17193918 -185134429 - MLT1B LTR MaLR -39 351 1 218 347 107 0 chr4 17193999 17194074 -185134273 + L2 LINE L2 3211 3293 -20 196 294 76 22 chr4 17194164 17194256 -185134091 - L2 LINE L2 -5 3308 3212 969 222 58 18 chr4 17194258 17194533 -185133814 - LTR16A1 LTR ERVL -4 453 168 2130 294 64 36 chr4 17195145 17196109 -185132238 - HERV16 LTR ERVL -2293 2703 1713 1279 173 5 5 chr4 17196112 17196326 -185132021 + AluJo SINE Alu 78 291 -21 1942 146 7 10 chr4 17196384 17196678 -185131669 - AluJb SINE Alu -19 293 1 607 347 29 26 chr4 17196726 17197069 -185131278 - HERV16 LTR ERVL -3425 1571 1228 36 62 0 0 chr4 17197498 17197562 -185130785 + AT_rich Low_complexity Low_complexity 1 64 0 378 0 0 0 chr4 17200144 17200186 -185128161 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 1942 39 0 0 chr4 17200186 17200417 -185127930 - L1PA5 LINE L1 -16 6138 5908 999 302 54 56 chr4 17200481 17201126 -185127221 - HERV16 LTR ERVL -4350 646 3 660 271 100 26 chr4 17201128 17201397 -185126950 - LTR16A1 LTR ERVL 0 457 169 330 221 118 110 chr4 17201403 17201675 -185126672 - L2 LINE L2 -1583 1731 1458 501 283 57 28 chr4 17202744 17202921 -185125426 + MIR SINE MIR 20 201 -61 432 224 10 0 chr4 17203411 17203509 -185124838 + MLT2B2 LTR ERVL 1 99 -416 2595 189 25 12 chr4 17203555 17204126 -185124221 - L1MC3 LINE L1 -8 7777 7200 237 266 64 32 chr4 17204126 17204220 -185124127 - MLT1F1 LTR MaLR -436 131 35 2625 106 9 19 chr4 17204245 17204678 -185123669 - L1PB1 LINE L1 0 6151 5723 2332 109 0 0 chr4 17204711 17205060 -185123287 - L1PB1 LINE L1 -400 5751 5403 189 0 0 0 chr4 17205072 17205093 -185123254 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 * 315 0 0 0 chr4 17205092 17205127 -185123220 + (TG)n Simple_repeat Simple_repeat 2 36 0 33017 73 10 7 chr4 17205127 17210667 -185117680 - L1PA6 LINE L1 -7 6147 595 382 260 35 81 chr4 17210995 17211728 -185116619 + L1ME3A LINE L1 3937 4637 -1509 563 292 26 26 chr4 17211760 17211986 -185116361 - LTR16B LTR ERVL -13 451 226 464 304 52 42 chr4 17212220 17212759 -185115588 + L1ME3A LINE L1 4670 5213 -933 22 70 0 0 chr4 17212772 17212815 -185115532 + AT_rich Low_complexity Low_complexity 1 43 0 1580 134 96 20 chr4 17212920 17213263 -185115084 + LTR24C LTR ERV1 242 610 -25 596 189 0 0 chr4 17213263 17213374 -185114973 + AluSg/x SINE Alu 197 307 -2 1249 236 33 64 chr4 17213419 17213935 -185114412 + Charlie2a DNA MER1_type 1586 2085 -777 4769 154 31 35 chr4 17214066 17214973 -185113374 - MER4D LTR ERV1 0 903 1 307 229 0 0 chr4 17215182 17215265 -185113082 + Charlie2 DNA MER1_type 2711 2793 -69 386 303 63 9 chr4 17215397 17215618 -185112729 + L1ME3A LINE L1 5730 5962 -208 24 32 0 0 chr4 17215801 17215832 -185112515 + AT_rich Low_complexity Low_complexity 1 31 0 391 113 70 0 chr4 17215845 17215916 -185112431 + MER50 LTR ERV1 1 76 -658 376 155 0 0 chr4 17215916 17215974 -185112373 - MER50-int LTR ERV1 -3808 3397 3340 582 219 0 9 chr4 17215974 17216088 -185112259 - MER50-int LTR ERV1 -4304 2901 2789 * 6159 134 46 21 chr4 17216085 17217805 -185110542 - MER50-int LTR ERV1 -5357 1848 7 867 149 39 0 chr4 17217805 17217959 -185110388 - MER50 LTR ERV1 -12 722 563 2189 149 31 0 chr4 17217964 17218354 -185109993 - MER50 LTR ERV1 -332 402 1 2290 191 21 12 chr4 17218889 17219370 -185108977 - MER31A LTR ERV1 0 485 1 2032 159 55 0 chr4 17219912 17220258 -185108089 + MLT1A1 LTR MaLR 1 365 0 239 242 55 22 chr4 17220433 17220524 -185107823 - MER103 DNA DNA -45 121 28 536 62 25 0 chr4 17220580 17220660 -185107687 + (TTCC)n Simple_repeat Simple_repeat 1 82 0 336 221 70 12 chr4 17221358 17221444 -185106903 - MIR SINE MIR -93 169 79 227 204 93 0 chr4 17223025 17223079 -185105268 - L2 LINE L2 -37 3276 3218 838 240 44 99 chr4 17223856 17224352 -185103995 + MLT1H LTR MaLR 79 547 -2 2717 146 12 32 chr4 17225365 17225859 -185102488 + MER31A LTR ERV1 1 484 -1 606 263 113 31 chr4 17226805 17227132 -185101215 + MLT1H LTR MaLR 183 536 -13 220 269 39 0 chr4 17227615 17227667 -185100680 + L2 LINE L2 3122 3175 -97 218 294 37 61 chr4 17227862 17228025 -185100322 - L3b LINE CR1 -134 1449 1291 532 290 52 68 chr4 17228237 17228489 -185099858 - MIR SINE MIR -12 250 3 189 294 228 11 chr4 17228601 17228693 -185099654 + MIR SINE MIR 38 149 -59 25 51 0 0 chr4 17228767 17228806 -185099541 + AT_rich Low_complexity Low_complexity 1 39 0 1593 214 28 21 chr4 17228962 17229349 -185098998 + MLT1B LTR MaLR 1 390 0 216 314 12 12 chr4 17229771 17229857 -185098490 + MIR3 SINE MIR 77 162 -46 487 250 70 17 chr4 17229896 17230068 -185098279 - Charlie8 DNA MER1_type -2155 262 82 6731 60 14 55 chr4 17230360 17232184 -185096163 - SVA Other Other -589 1382 1 571 256 55 55 chr4 17232566 17232839 -185095508 - L2 LINE L2 0 3313 3041 298 309 62 41 chr4 17233539 17233733 -185094614 - MLT1L LTR MaLR -415 200 3 421 298 53 8 chr4 17233734 17233865 -185094482 + L2 LINE L2 3136 3272 0 334 218 26 0 chr4 17234903 17234981 -185093366 + MIR SINE MIR 78 157 -105 471 78 0 0 chr4 17234997 17235061 -185093286 + (TA)n Simple_repeat Simple_repeat 1 64 0 240 255 0 0 chr4 17235125 17235176 -185093171 + L2 LINE L2 3244 3294 -19 291 290 32 16 chr4 17235885 17236009 -185092338 + L2 LINE L2 2680 2805 -509 456 276 147 6 chr4 17236014 17236184 -185092163 - MER3 DNA MER1_type 0 209 16 371 299 160 14 chr4 17236253 17236534 -185091813 + L2 LINE L2 2992 3313 0 289 307 23 0 chr4 17237415 17237503 -185090844 + MIR SINE MIR 11 100 -162 2198 146 102 128 chr4 17237624 17238084 -185090263 + MER21B LTR ERV1 1 446 -417 1658 155 7 61 chr4 17238084 17238381 -185089966 - AluJo SINE Alu -30 282 2 2198 146 102 128 chr4 17238381 17238468 -185089879 + MER21B LTR ERV1 446 534 -329 2098 126 0 3 chr4 17238468 17238754 -185089593 - AluSx SINE Alu -27 285 1 1285 211 32 13 chr4 17239543 17239855 -185088492 + MER33 DNA MER1_type 3 320 -4 233 250 0 0 chr4 17240116 17240168 -185088179 - MIR SINE MIR -59 149 98 182 62 31 0 chr4 17240173 17240205 -185088142 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 45291 40 0 2 chr4 17240206 17246367 -185081980 - L1PA4 LINE L1 0 6155 4 320 188 0 12 chr4 17246722 17246802 -185081545 + (TA)n Simple_repeat Simple_repeat 2 80 0 188 225 0 0 chr4 17247697 17247737 -185080610 - L2 LINE L2 -20 3293 3254 186 189 0 0 chr4 17248560 17248597 -185079750 + CT-rich Low_complexity Low_complexity 1 37 0 2061 97 8 0 chr4 17248782 17249049 -185079298 + AluSx SINE Alu 1 269 -43 1201 115 50 25 chr4 17249152 17249352 -185078995 - MSTA LTR MaLR -223 205 1 22 35 0 0 chr4 17249731 17249760 -185078587 + AT_rich Low_complexity Low_complexity 1 29 0 184 315 19 0 chr4 17249822 17249876 -185078471 - L2 LINE L2 -89 3183 3129 2042 124 185 6 chr4 17250227 17250590 -185077757 + MSTA LTR MaLR 1 428 0 301 178 111 14 chr4 17250590 17250692 -185077655 - MLT1J LTR MaLR -320 126 1 339 229 0 0 chr4 17251590 17251673 -185076674 + Charlie2 DNA MER1_type 2711 2793 -69 419 276 43 0 chr4 17252307 17252423 -185075924 + MER5C DNA MER1_type 4 124 -200 215 273 0 0 chr4 17252980 17253035 -185075312 + CT-rich Low_complexity Low_complexity 3 57 0 291 336 6 0 chr4 17254204 17254347 -185074000 - MIR SINE MIR -62 146 47 446 308 90 14 chr4 17254710 17254921 -185073426 + L2 LINE L2 2723 2949 -365 677 257 11 6 chr4 17254935 17255118 -185073229 + MIR SINE MIR 76 259 -3 276 345 52 35 chr4 17255145 17255377 -185072970 + L2 LINE L2 2950 3185 -128 387 0 0 0 chr4 17255410 17255453 -185072894 + (T)n Simple_repeat Simple_repeat 1 43 0 1008 154 0 0 chr4 17255580 17255729 -185072618 + MSTA LTR MaLR 278 426 -2 347 269 91 35 chr4 17256359 17256556 -185071791 - L2 LINE L2 0 3313 3106 6645 45 20 0 chr4 17256985 17257794 -185070553 - L1PA5 LINE L1 -1 6153 5329 2576 47 3 3 chr4 17257790 17258128 -185070219 + L1PA5 LINE L1 4972 5309 -837 * 691 292 210 23 chr4 17258163 17259278 -185069069 - L2 LINE L2 -16 3297 1968 435 192 8 24 chr4 17259306 17259431 -185068916 + CT-rich Low_complexity Low_complexity 4 126 0 218 287 207 0 chr4 17261062 17261149 -185067198 + L2 LINE L2 2229 2333 -981 336 281 68 27 chr4 17261305 17261451 -185066896 + MIR SINE MIR 23 174 -88 28 0 0 0 chr4 17261485 17261513 -185066834 + AT_rich Low_complexity Low_complexity 1 28 0 1112 153 0 0 chr4 17261543 17261719 -185066628 - AluSg/x SINE Alu 0 312 137 315 387 59 11 chr4 17262037 17262223 -185066124 + L2 LINE L2 3076 3270 -2 1032 251 82 3 chr4 17262994 17263297 -185065050 + L2 LINE L2 2466 2792 -522 262 301 48 0 chr4 17263692 17263775 -185064572 + MIR SINE MIR 90 176 -86 267 266 46 18 chr4 17264827 17264936 -185063411 - MIR SINE MIR -57 205 94 250 290 94 29 chr4 17264939 17265077 -185063270 - MIR SINE MIR -60 202 56 200 323 15 0 chr4 17265094 17265159 -185063188 + L2 LINE L2 3248 3313 0 436 274 18 9 chr4 17267037 17267150 -185061197 - MER81 DNA DNA 0 114 1 196 250 89 0 chr4 17267198 17267254 -185061093 + MIR SINE MIR 29 89 -173 263 322 28 42 chr4 17268546 17268689 -185059658 - L1ME LINE L1 -561 5560 5420 350 219 94 78 chr4 17269422 17269550 -185058797 - L2 LINE L2 0 3313 3184 302 342 26 0 chr4 17269779 17269896 -185058451 - MIR SINE MIR -91 171 52 271 345 26 0 chr4 17270769 17270882 -185057465 + MIR3 SINE MIR 1 116 -92 208 0 62 0 chr4 17272420 17272452 -185055895 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 207 114 0 0 chr4 17272730 17272765 -185055582 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 256 263 12 12 chr4 17272768 17272848 -185055499 - MIR SINE MIR -10 252 173 2283 82 4 0 chr4 17272949 17273230 -185055117 - AluY SINE Alu -29 282 1 186 306 181 14 chr4 17273231 17273303 -185055044 + L2 LINE L2 3196 3279 -34 231 299 75 0 chr4 17273557 17273624 -185054723 + MIR3 SINE MIR 126 197 -11 342 45 0 0 chr4 17273715 17273759 -185054588 + (TGGA)n Simple_repeat Simple_repeat 1 44 0 191 245 0 41 chr4 17273837 17273886 -185054461 - L2 LINE L2 0 3272 3226 1265 214 31 0 chr4 17274582 17274811 -185053536 - MER8 DNA MER2_type 0 239 4 331 222 0 12 chr4 17275278 17275359 -185052988 - MER116 DNA Mariner 0 80 1 2152 68 0 0 chr4 17275623 17275886 -185052461 - AluY SINE Alu -11 300 38 354 138 0 0 chr4 17275986 17276044 -185052303 + (CA)n Simple_repeat Simple_repeat 2 59 0 1284 281 41 20 chr4 17276121 17276609 -185051738 - L1MC/D LINE L1 -2014 5794 5297 477 312 57 76 chr4 17276929 17277442 -185050905 - L1MC/D LINE L1 -1210 4936 4434 205 171 0 0 chr4 17277467 17277502 -185050845 + (CATATA)n Simple_repeat Simple_repeat 1 35 0 524 308 41 31 chr4 17277585 17278004 -185050343 - L1MC/D LINE L1 -1813 4333 3911 622 319 30 5 chr4 17278062 17278290 -185050057 - MIR SINE MIR 0 262 28 971 172 10 35 chr4 17279019 17279217 -185049130 - AluSg/x SINE Alu 0 312 120 2579 53 0 31 chr4 17279654 17279975 -185048372 + AluY SINE Alu 1 311 0 25 31 0 0 chr4 17280081 17280113 -185048234 + AT_rich Low_complexity Low_complexity 1 32 0 17624 34 2 1 chr4 17280187 17282967 -185045380 - L1PA3 LINE L1 -5 6150 3369 217 151 0 94 chr4 17283069 17283122 -185045225 - MIR SINE MIR -65 143 96 1554 272 126 68 chr4 17283889 17285104 -185043243 + HAL1 LINE L1 26 1310 -1197 1473 276 56 20 chr4 17285134 17285525 -185042822 + HAL1 LINE L1 1374 1791 -716 2734 133 38 21 chr4 17285525 17285946 -185042401 + MSTA LTR MaLR 1 428 0 1473 276 56 20 chr4 17285946 17286091 -185042256 + HAL1 LINE L1 1791 1929 -578 359 269 221 14 chr4 17286103 17286317 -185042030 + HAL1 LINE L1 1977 2145 -362 291 28 0 0 chr4 17286317 17286353 -185041994 + (TG)n Simple_repeat Simple_repeat 2 37 0 359 269 221 14 chr4 17286353 17286432 -185041915 + HAL1 LINE L1 2145 2331 -176 2521 145 8 0 chr4 17287343 17287715 -185040632 - THE1C LTR MaLR 0 375 1 993 173 152 20 chr4 17288650 17288847 -185039500 + MER58A DNA MER1_type 2 224 0 455 277 101 19 chr4 17288980 17289139 -185039208 - MER5A DNA MER1_type 0 189 7 568 323 69 5 chr4 17289148 17289365 -185038982 + MIR SINE MIR 20 250 -12 180 0 0 0 chr4 17289541 17289561 -185038786 + (T)n Simple_repeat Simple_repeat 1 20 0 4558 180 50 4 chr4 17289798 17290767 -185037580 - L1 LINE L1 -2557 3589 2577 2182 161 41 34 chr4 17291516 17291927 -185036420 + MLT2D LTR ERVL 1 414 0 543 230 58 92 chr4 17291951 17292212 -185036135 - L2 LINE L2 -5 3308 3057 1092 187 50 11 chr4 17292276 17293203 -185035144 - L1MD1 LINE L1 -2 6634 5673 624 50 0 0 chr4 17293204 17293284 -185035063 + (TA)n Simple_repeat Simple_repeat 2 81 0 548 311 26 21 chr4 17293389 17293582 -185034765 + LTR16C LTR ERVL 297 490 -1 10369 30 0 1 chr4 17293640 17295577 -185032770 + L1PA3 LINE L1 4219 6155 0 22 0 0 0 chr4 17295577 17295599 -185032748 + AT_rich Low_complexity Low_complexity 1 22 0 2247 239 42 8 chr4 17295752 17296402 -185031945 - L1MD1 LINE L1 -1131 5409 4738 417 201 0 125 chr4 17296403 17296547 -185031800 - L1MD1 LINE L1 -1944 4596 4471 2980 244 128 38 chr4 17296554 17297423 -185030924 - L1MD1 LINE L1 -5576 964 18 635 316 15 5 chr4 17297838 17298044 -185030303 + MIR SINE MIR 45 252 -10 1028 264 77 22 chr4 17298258 17298659 -185029688 - MLT1J LTR MaLR -20 491 69 352 267 36 67 chr4 17298947 17298990 -185029357 + MIR SINE MIR 75 118 -144 1002 209 62 24 chr4 17298990 17299201 -185029146 + MER20 DNA MER1_type 1 219 0 352 267 36 67 chr4 17299201 17299322 -185029025 + MIR SINE MIR 118 234 -28 3709 154 16 6 chr4 17299418 17300041 -185028306 - L1PA16 LINE L1 -14 6152 5524 354 304 55 28 chr4 17300136 17300317 -185028030 - MIR SINE MIR -56 206 21 2152 88 3 59 chr4 17300374 17300704 -185027643 + AluSq SINE Alu 1 313 0 1858 210 25 52 chr4 17300920 17301396 -185026951 - MLT1C LTR MaLR 0 467 5 23 0 0 0 chr4 17301692 17301715 -185026632 + AT_rich Low_complexity Low_complexity 1 23 0 186 103 0 0 chr4 17302349 17302378 -185025969 + (TG)n Simple_repeat Simple_repeat 2 30 0 314 289 126 0 chr4 17302484 17302619 -185025728 - MIR SINE MIR -4 258 107 199 347 10 20 chr4 17302837 17302935 -185025412 - MIR SINE MIR -163 99 3 2479 86 0 3 chr4 17303351 17303665 -185024682 + AluSq SINE Alu 1 313 0 2340 120 141 0 chr4 17305119 17305494 -185022853 - MSTA LTR MaLR 0 428 1 2544 182 66 26 chr4 17305499 17305999 -185022348 - MLT2B1 LTR ERVL 0 520 1 537 331 38 25 chr4 17306312 17306629 -185021718 + L1ME3A LINE L1 5625 5945 -225 2291 113 3 0 chr4 17307082 17307393 -185020954 - AluSx SINE Alu 0 312 1 253 246 16 0 chr4 17307581 17307642 -185020705 - L2 LINE L2 -8 3305 3244 1862 148 6 35 chr4 17308727 17309038 -185019309 - AluJo SINE Alu -10 302 1 337 167 0 17 chr4 17309041 17309101 -185019246 - MIR SINE MIR -98 164 106 187 31 62 0 chr4 17309114 17309146 -185019201 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 628 250 47 25 chr4 17309334 17309531 -185018816 - MIR SINE MIR -44 218 18 2423 80 3 0 chr4 17309627 17309926 -185018421 - AluSp SINE Alu -13 300 1 344 154 0 0 chr4 17310078 17310130 -185018217 - MER5B DNA MER1_type 0 178 127 3365 140 23 4 chr4 17310135 17310662 -185017685 + L1MC1 LINE L1 5779 6315 -18 715 182 16 0 chr4 17310717 17310838 -185017509 - MER5B DNA MER1_type -48 130 8 383 285 57 62 chr4 17311097 17311290 -185017057 + L2 LINE L2 2892 3083 -189 423 382 19 56 chr4 17311588 17311910 -185016437 + L2 LINE L2 2963 3272 0 240 159 23 0 chr4 17311907 17311951 -185016396 + MIR SINE MIR 218 262 0 * 26811 41 7 6 chr4 17312662 17315949 -185012398 + L1P LINE L1 4 3294 -2852 5001 160 40 4 chr4 17316049 17316876 -185011471 - Tigger1 DNA MER2_type -1561 857 1 482 144 27 9 chr4 17317348 17317459 -185010888 + CT-rich Low_complexity Low_complexity 4 116 0 1702 164 4 7 chr4 17317464 17317738 -185010609 - AluSx SINE Alu -38 274 2 3817 179 103 25 chr4 17317886 17318652 -185009695 - LTR1B LTR ERV1 0 826 1 3389 146 35 6 chr4 17319158 17319707 -185008640 - MER34B LTR ERV1 0 565 1 374 329 13 38 chr4 17320091 17320249 -185008098 + MIR SINE MIR 16 169 -93 24 32 0 0 chr4 17320554 17320585 -185007762 + AT_rich Low_complexity Low_complexity 1 31 0 270 265 137 29 chr4 17320607 17320709 -185007638 - L2 LINE L2 0 3272 3160 336 316 53 0 chr4 17321777 17321961 -185006386 + MIR SINE MIR 11 208 -54 2442 87 3 0 chr4 17321962 17322271 -185006076 + AluSp SINE Alu 1 310 -3 278 219 145 33 chr4 17322724 17322853 -185005494 - MIR SINE MIR -62 146 6 1181 185 5 0 chr4 17323156 17323340 -185005007 - MER5A DNA MER1_type -4 185 1 954 160 5 58 chr4 17323389 17323577 -185004770 + AluJb SINE Alu 120 297 -15 440 235 35 2 chr4 17323577 17323685 -185004662 + MER5B DNA MER1_type 55 176 -13 718 234 148 39 chr4 17323931 17324268 -185004079 + MER68 LTR ERV1 3 376 -186 3429 129 57 6 chr4 17324428 17324969 -185003378 + LTR24B LTR ERV1 1 569 -7 190 280 20 0 chr4 17325476 17325526 -185002821 + L3 LINE CR1 1524 1574 -3 2523 81 0 0 chr4 17325633 17325943 -185002404 + AluY SINE Alu 1 310 -1 266 333 102 0 chr4 17325979 17326087 -185002260 - MIR3 SINE MIR -54 154 36 205 237 203 0 chr4 17326169 17326228 -185002119 - MIR SINE MIR -16 246 176 324 267 23 0 chr4 17326356 17326442 -185001905 - MIR SINE MIR -3 259 172 323 267 84 46 chr4 17326736 17326867 -185001480 + MIR SINE MIR 29 164 -98 2059 136 33 41 chr4 17327202 17327591 -185000756 - MLT1B LTR MaLR -2 388 3 304 243 69 48 chr4 17327684 17327873 -185000474 + L1MC5 LINE L1 7331 7523 -438 736 279 21 21 chr4 17328071 17328311 -185000036 + L1MEc LINE L1 40 279 -6117 1681 102 8 0 chr4 17328414 17328650 -184999697 + THE1B LTR MaLR 127 364 0 687 278 75 18 chr4 17328803 17329030 -184999317 + MIR SINE MIR 21 260 -2 21 0 0 0 chr4 17329030 17329051 -184999296 + AT_rich Low_complexity Low_complexity 1 21 0 224 313 205 9 chr4 17329089 17329201 -184999146 - MIR SINE MIR -108 154 21 278 253 12 24 chr4 17329397 17329480 -184998867 - MER63 DNA MER1_type -5 1057 976 6370 98 6 9 chr4 17329635 17330621 -184997726 + L1PA11 LINE L1 5180 6162 -12 183 42 0 0 chr4 17330647 17330671 -184997676 + (GA)n Simple_repeat Simple_repeat 2 25 0 538 266 39 78 chr4 17330742 17331076 -184997271 + L1MC4 LINE L1 6749 7069 -973 1017 193 113 58 chr4 17331138 17331464 -184996883 - MER2 DNA MER2_type 0 344 1 4416 145 27 10 chr4 17331751 17332539 -184995808 + Tigger1 DNA MER2_type 1618 2418 0 797 21 0 0 chr4 17332909 17333002 -184995345 - L1PA4 LINE L1 -8 6147 6055 1770 44 0 0 chr4 17333002 17333227 -184995120 + L1PA4 LINE L1 5747 5971 -184 597 278 59 6 chr4 17333277 17333446 -184994901 - MIR SINE MIR -53 209 32 432 0 0 0 chr4 17333446 17333494 -184994853 + (TG)n Simple_repeat Simple_repeat 2 49 0 1903 135 66 0 chr4 17334272 17334561 -184993786 + AluSx SINE Alu 1 308 -4 407 202 242 24 chr4 17334631 17334755 -184993592 - MIR SINE MIR -1 261 111 1778 177 2 57 chr4 17334811 17335079 -184993268 + MLT1B LTR MaLR 7 247 -143 1936 146 24 0 chr4 17335079 17335374 -184992973 + AluSx SINE Alu 10 311 -1 1778 177 2 57 chr4 17335374 17335511 -184992836 + MLT1B LTR MaLR 247 390 0 2578 46 0 7 chr4 17335636 17335941 -184992406 + AluY SINE Alu 1 303 -8 425 269 20 60 chr4 17338725 17338874 -184989473 - MIR SINE MIR -93 169 27 22 35 0 0 chr4 17339503 17339532 -184988815 + AT_rich Low_complexity Low_complexity 1 29 0 264 288 105 20 chr4 17339668 17339974 -184988373 + L1ME4a LINE L1 4374 4705 -1441 28 71 0 0 chr4 17340220 17340276 -184988071 + AT_rich Low_complexity Low_complexity 1 56 0 2284 67 0 7 chr4 17340579 17340877 -184987470 + L1PA5 LINE L1 5853 6148 -6 421 269 62 31 chr4 17341164 17341391 -184986956 + L1ME4a LINE L1 5502 5735 -386 1664 217 92 5 chr4 17341422 17341846 -184986501 + MLT1C LTR MaLR 7 467 0 231 258 11 22 chr4 17342023 17342112 -184986235 + L1ME4a LINE L1 5961 6048 -73 321 279 45 45 chr4 17342149 17342303 -184986044 - MLT1L LTR MaLR -447 168 15 1868 169 64 6 chr4 17342369 17342712 -184985635 - MLT1A1 LTR MaLR -2 363 1 453 364 70 37 chr4 17343089 17343635 -184984712 - L2 LINE L2 -3 3310 2736 236 164 60 30 chr4 17343732 17343799 -184984548 + MLT1H LTR MaLR 477 545 -4 2292 118 0 0 chr4 17343853 17344157 -184984190 - AluSx SINE Alu -8 304 1 39 38 0 0 chr4 17344189 17344242 -184984105 + AT_rich Low_complexity Low_complexity 1 53 0 438 309 43 16 chr4 17344372 17344560 -184983787 - LTR67 LTR ERVL -88 469 277 324 276 11 11 chr4 17344657 17344744 -184983603 - LTR67 LTR ERVL -426 131 45 432 191 0 0 chr4 17345403 17345492 -184982855 + (TA)n Simple_repeat Simple_repeat 1 89 0 198 167 0 0 chr4 17345598 17345634 -184982713 + (TA)n Simple_repeat Simple_repeat 2 37 0 287 300 25 8 chr4 17345655 17345775 -184982572 + LTR16C LTR ERVL 368 489 -2 192 217 0 0 chr4 17345862 17345908 -184982439 + (TATATG)n Simple_repeat Simple_repeat 2 47 0 182 313 31 0 chr4 17346038 17346102 -184982245 - L2 LINE L2 -37 3235 3170 228 254 0 48 chr4 17346194 17346257 -184982090 + GA-rich Low_complexity Low_complexity 4 63 0 262 96 19 19 chr4 17346383 17346435 -184981912 + (TTCC)n Simple_repeat Simple_repeat 1 52 0 575 48 0 12 chr4 17346504 17346588 -184981759 + (GGAA)n Simple_repeat Simple_repeat 1 83 0 278 170 0 0 chr4 17346693 17346740 -184981607 - MIR SINE MIR -70 192 146 714 263 78 5 chr4 17346740 17346957 -184981390 + MIR SINE MIR 5 237 -25 2867 161 65 41 chr4 17348846 17349435 -184978912 + LTR26 LTR ERV1 1 603 0 2245 131 60 34 chr4 17349488 17350006 -184978341 + MLT2A2 LTR ERVL 1 554 0 431 191 43 11 chr4 17350015 17350109 -184978238 + MIR SINE MIR 110 206 -56 314 327 2 9 chr4 17350159 17350300 -184978047 - MIR SINE MIR -65 143 4 2776 269 34 44 chr4 17351254 17351350 -184976997 + L1MEc LINE L1 414 509 -5887 1489 118 45 0 chr4 17351350 17351570 -184976777 + MER30 DNA MER1_type 1 230 0 2776 269 34 44 chr4 17351570 17352817 -184975530 + L1MEc LINE L1 509 1743 -4653 5636 129 12 65 chr4 17352818 17353870 -184974477 + HSMAR2 DNA Mariner 305 1301 -1 609 158 105 0 chr4 17353876 17354009 -184974338 + L1MD1 LINE L1 6088 6234 -8 1553 234 69 28 chr4 17354010 17354852 -184973495 + L1MEc LINE L1 1850 2690 -3525 332 233 14 0 chr4 17354856 17354929 -184973418 - MIR SINE MIR -187 75 2 569 236 38 38 chr4 17356413 17356570 -184971777 + MIR SINE MIR 103 259 -3 449 211 28 0 chr4 17356645 17356754 -184971593 - LTR67 LTR ERVL 0 557 446 469 279 25 12 chr4 17356881 17357042 -184971305 - LTR67 LTR ERVL -306 251 89 197 260 169 0 chr4 17357077 17357154 -184971193 - L2 LINE L2 -86 3186 3097 266 351 55 30 chr4 17357617 17357819 -184970528 - L2 LINE L2 -179 3093 2887 304 273 76 82 chr4 17358115 17358456 -184969891 + MLT1J LTR MaLR 28 366 -145 993 180 159 63 chr4 17358917 17359294 -184969053 - MLT1C LTR MaLR 0 467 1 282 299 145 8 chr4 17360339 17360456 -184967891 + MIR SINE MIR 21 153 -109 1139 84 0 6 chr4 17360599 17360778 -184967569 + (TCTA)n Simple_repeat Simple_repeat 2 179 0 180 296 74 0 chr4 17360929 17361010 -184967337 - MIR3 SINE MIR -3 205 119 189 154 0 0 chr4 17361140 17361179 -184967168 + (ATG)n Simple_repeat Simple_repeat 2 40 0 637 255 56 31 chr4 17361230 17361426 -184966921 - MIR SINE MIR -60 202 2 201 147 0 0 chr4 17361448 17361482 -184966865 + (ATG)n Simple_repeat Simple_repeat 2 35 0 635 281 46 38 chr4 17361489 17361727 -184966620 - MIR SINE MIR -10 252 13 247 294 108 15 chr4 17362386 17362590 -184965757 - LTR33A LTR ERVL 0 523 301 1341 189 0 54 chr4 17362600 17362933 -184965414 + MER33 DNA MER1_type 9 323 -1 628 254 242 21 chr4 17362941 17363326 -184965021 - LTR50 LTR ERVL -323 472 3 248 265 68 38 chr4 17363335 17363467 -184964880 - Charlie8 DNA MER1_type -2243 174 39 243 200 38 38 chr4 17363472 17363552 -184964795 + MIR3 SINE MIR 126 205 -3 387 285 53 94 chr4 17364947 17365287 -184963060 - L2 LINE L2 -1 3312 2987 2599 90 25 6 chr4 17366823 17367180 -184961167 - THE1B LTR MaLR 0 364 1 288 77 0 0 chr4 17367690 17367729 -184960618 + (T)n Simple_repeat Simple_repeat 1 39 0 21 57 0 19 chr4 17369515 17369534 -184958813 + AT_rich Low_complexity Low_complexity 1 19 -33 1581 113 162 49 chr4 17369534 17369861 -184958486 - THE1B LTR MaLR 0 364 1 21 57 0 19 chr4 17369861 17369894 -184958453 + AT_rich Low_complexity Low_complexity 19 52 0 378 352 71 24 chr4 17369952 17370415 -184957932 - L1M4 LINE L1 -1093 5053 4569 292 324 153 6 chr4 17370441 17370611 -184957736 - MIR SINE MIR 0 262 68 21 36 0 0 chr4 17370709 17370737 -184957610 + AT_rich Low_complexity Low_complexity 1 28 0 346 197 0 0 chr4 17370912 17370983 -184957364 + L1M4 LINE L1 4538 4608 -1538 739 303 54 92 chr4 17370983 17371260 -184957087 + L1M4 LINE L1 3712 3998 -2148 633 110 7 132 chr4 17371260 17371396 -184956951 - FLAM_C SINE Alu -14 119 1 739 303 54 92 chr4 17371396 17371752 -184956595 + L1M4 LINE L1 3998 4321 -1825 2128 126 10 0 chr4 17372404 17372705 -184955642 - AluSx SINE Alu -8 304 1 2173 129 0 0 chr4 17372911 17373213 -184955134 - AluSg SINE Alu -8 302 1 341 280 283 4 chr4 17373528 17373717 -184954630 + MIR SINE MIR 11 249 -13 290 285 207 14 chr4 17374034 17374329 -184954018 + L1ME4a LINE L1 5770 6121 0 203 307 147 13 chr4 17374814 17374889 -184953458 + MIR SINE MIR 68 152 -110 1802 169 37 8 chr4 17374900 17375255 -184953092 + MLT1A1 LTR MaLR 1 365 0 425 319 50 0 chr4 17375365 17375525 -184952822 + MIR SINE MIR 20 187 -75 636 283 88 36 chr4 17375551 17375802 -184952545 - MER102b DNA MER1_type -20 321 58 385 224 145 65 chr4 17375830 17376150 -184952197 + MLT1H LTR MaLR 49 370 -39 1250 99 5 35 chr4 17376440 17376641 -184951706 + THE1C-int LTR MaLR 1385 1579 -1 2276 147 16 31 chr4 17376642 17377023 -184951324 + THE1C LTR MaLR 1 375 0 200 389 74 18 chr4 17377234 17377463 -184950884 - L2 LINE L2 -182 3090 2849 440 303 170 45 chr4 17377512 17378041 -184950306 + MLT1G1 LTR MaLR 1 595 0 1080 188 103 32 chr4 17378082 17378452 -184949895 + MSTC LTR MaLR 1 426 -2 483 113 0 0 chr4 17378608 17378679 -184949668 + L1PA5 LINE L1 6082 6152 -2 546 261 66 127 chr4 17378868 17379340 -184949007 + LTR16A1 LTR ERVL 15 457 0 259 288 90 9 chr4 17379680 17379791 -184948556 + MIR SINE MIR 131 250 -12 232 323 91 0 chr4 17379798 17379897 -184948450 + L2 LINE L2 3138 3245 -27 2803 149 32 38 chr4 17379965 17380440 -184947907 + MER70A LTR ERVL 1 472 0 21 57 0 0 chr4 17382154 17382189 -184946158 + AT_rich Low_complexity Low_complexity 1 35 0 188 219 0 0 chr4 17383056 17383097 -184945250 + L3b LINE CR1 1279 1319 -264 246 167 0 0 chr4 17384350 17384410 -184943937 + (TG)n Simple_repeat Simple_repeat 1 60 0 317 307 97 0 chr4 17385575 17385689 -184942658 - MER117 DNA MER1_type -10 187 63 435 246 14 56 chr4 17385712 17385854 -184942493 + L2 LINE L2 3134 3269 -3 208 273 55 55 chr4 17388570 17388680 -184939667 - MIR SINE MIR -28 234 125 1634 197 7 0 chr4 17388850 17389155 -184939192 + AluJb SINE Alu 1 307 -5 180 304 18 0 chr4 17389203 17389259 -184939088 + L2 LINE L2 3001 3057 -215 354 261 11 11 chr4 17389784 17389876 -184938471 + L2 LINE L2 3221 3312 -1 25 31 0 0 chr4 17390215 17390247 -184938100 + AT_rich Low_complexity Low_complexity 1 32 0 313 198 20 20 chr4 17390496 17390597 -184937750 + CT-rich Low_complexity Low_complexity 3 103 0 558 327 24 6 chr4 17390654 17390822 -184937525 + MIR3 SINE MIR 1 171 -37 246 193 0 0 chr4 17391337 17391394 -184936953 + (CA)n Simple_repeat Simple_repeat 1 57 0 192 48 71 0 chr4 17391458 17391500 -184936847 + A-rich Low_complexity Low_complexity 2 46 0 232 320 32 115 chr4 17392203 17392515 -184935832 + L2 LINE L2 2926 3211 -61 344 275 73 51 chr4 17392587 17392717 -184935630 + MER5A DNA MER1_type 7 144 -45 3578 159 113 6 chr4 17392717 17393354 -184934993 + MER39 LTR ERV1 1 705 -2 344 275 73 51 chr4 17393354 17393401 -184934946 + MER5A DNA MER1_type 144 188 -1 3325 152 29 0 chr4 17393938 17394457 -184933890 + L1PA16 LINE L1 5629 6162 -4 197 241 74 0 chr4 17394929 17394983 -184933364 + MIR SINE MIR 151 208 -54 391 236 45 11 chr4 17395079 17395168 -184933179 - L2 LINE L2 -12 3260 3169 468 51 0 0 chr4 17396553 17396612 -184931735 + (TGGA)n Simple_repeat Simple_repeat 3 61 0 483 185 157 0 chr4 17397268 17397376 -184930971 + MER58B DNA MER1_type 217 341 0 425 160 87 93 chr4 17399239 17399389 -184928958 + LTR33A LTR ERVL 1 149 -374 1888 189 62 36 chr4 17399390 17399840 -184928507 - MLT1C LTR MaLR 0 467 6 445 261 113 41 chr4 17399851 17400139 -184928208 + LTR33A LTR ERVL 147 523 0 561 306 67 0 chr4 17400228 17400437 -184927910 + MIR SINE MIR 40 262 0 303 71 0 0 chr4 17400530 17400572 -184927775 + (TG)n Simple_repeat Simple_repeat 2 43 0 1863 159 75 0 chr4 17400573 17400893 -184927454 - MER2 DNA MER2_type 0 345 2 481 205 26 113 chr4 17401335 17401486 -184926861 - MLT2C1 LTR ERVL 0 397 260 402 229 0 57 chr4 17401451 17401556 -184926791 - Tigger7 DNA MER2_type -30 2457 2359 * 2040 159 30 0 chr4 17401549 17401882 -184926465 - Tigger7 DNA MER2_type -1940 547 205 1310 205 31 0 chr4 17401932 17402161 -184926186 - Tigger7 DNA MER2_type -485 248 13 461 278 124 72 chr4 17402448 17402754 -184925593 - L2 LINE L2 -19 3253 2932 675 267 16 53 chr4 17403840 17404087 -184924260 - L2 LINE L2 0 3313 3076 484 304 35 6 chr4 17404117 17404287 -184924060 + MLT1D LTR MaLR 1 175 -330 2705 194 10 41 chr4 17404287 17404869 -184923478 + MLT2B3 LTR ERVL 1 451 -2 1276 210 89 30 chr4 17404869 17405189 -184923158 + MLT1D LTR MaLR 166 505 0 680 127 196 13 chr4 17405230 17405388 -184922959 + MER53 DNA DNA 3 189 0 331 250 19 115 chr4 17405396 17405604 -184922743 - L2 LINE L2 -312 3001 2814 240 108 0 0 chr4 17405604 17405641 -184922706 + HSMAR1 DNA Mariner 1 37 -1250 2333 86 39 6 chr4 17405641 17405978 -184922369 + L1PB1 LINE L1 5440 5787 -364 1222 126 45 9 chr4 17405998 17406220 -184922127 + L1MA9 LINE L1 6078 6307 -5 197 65 32 0 chr4 17406251 17406282 -184922065 + (TA)n Simple_repeat Simple_repeat 1 32 0 2468 126 3 3 chr4 17406283 17406633 -184921714 + L1PB1 LINE L1 5801 6150 -1 493 104 0 0 chr4 17406643 17406710 -184921637 - MADE1 DNA Mariner -13 67 1 192 200 50 33 chr4 17406729 17406789 -184921558 - L2 LINE L2 -527 2787 2727 181 214 54 0 chr4 17407397 17407453 -184920894 - MIR SINE MIR -125 137 79 182 156 0 31 chr4 17458333 17458365 -184869982 + L2 LINE L2 3025 3055 -258 * 189 318 183 0 chr4 17458364 17458490 -184869857 - L2 LINE L2 -7 3306 3158 713 297 98 4 chr4 17458541 17458777 -184869570 - MIR SINE MIR -3 259 2 507 362 18 9 chr4 17459031 17459255 -184869092 + MIR SINE MIR 37 262 0 23 0 0 0 chr4 17459785 17459808 -184868539 + AT_rich Low_complexity Low_complexity 1 23 0 293 240 96 89 chr4 17460312 17460458 -184867889 + MIR SINE MIR 31 177 -85 455 345 56 40 chr4 17461095 17461344 -184867003 + MIR SINE MIR 2 254 -8 408 40 0 0 chr4 17463768 17463818 -184864529 + (TA)n Simple_repeat Simple_repeat 1 50 0 210 37 0 0 chr4 17463817 17463844 -184864503 + (CA)n Simple_repeat Simple_repeat 2 28 0 * 183 204 0 0 chr4 17464777 17464826 -184863521 + A-rich Low_complexity Low_complexity 1 49 0 21 36 0 0 chr4 17468384 17468412 -184859935 + AT_rich Low_complexity Low_complexity 1 28 0 992 252 41 125 chr4 17469407 17469933 -184858414 + MLT1G1 LTR MaLR 24 590 -5 198 103 0 0 chr4 17470176 17470205 -184858142 + (T)n Simple_repeat Simple_repeat 1 29 0 293 266 0 0 chr4 17470208 17470272 -184858075 + MLT1K LTR MaLR 525 588 0 1887 213 60 14 chr4 17470412 17470895 -184857452 - MLT1D LTR MaLR 0 505 1 21 0 0 0 chr4 17471579 17471600 -184856747 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr4 17472898 17472920 -184855427 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr4 17473313 17473344 -184855003 + AT_rich Low_complexity Low_complexity 1 31 0 558 317 48 63 chr4 17473480 17473945 -184854402 - L2 LINE L2 -166 3147 2682 248 311 0 0 chr4 17474071 17474132 -184854215 - L2 LINE L2 -52 3220 3160 495 359 97 4 chr4 17474290 17474549 -184853798 - L3 LINE CR1 -748 829 547 1468 184 62 7 chr4 17475176 17475464 -184852883 - AluJo SINE Alu -8 304 1 207 69 0 0 chr4 17475830 17475859 -184852488 + (TA)n Simple_repeat Simple_repeat 2 30 0 403 318 45 17 chr4 17477124 17477300 -184851047 + MLT1J2 LTR MaLR 256 436 -14 336 327 65 39 chr4 17477397 17477657 -184850690 - L1MD2 LINE L1 -368 5991 5725 426 293 45 25 chr4 17477665 17477822 -184850525 - L1MD2 LINE L1 -2187 5621 5462 604 314 16 0 chr4 17478757 17478945 -184849402 + MIR SINE MIR 51 241 -21 183 338 142 20 chr4 17478994 17479142 -184849205 + L2 LINE L2 3107 3272 0 198 0 0 0 chr4 17479514 17479536 -184848811 + (A)n Simple_repeat Simple_repeat 1 22 0 26546 133 11 30 chr4 17480253 17486096 -184842251 + L1PA8A LINE L1 1 5783 -663 2735 20 0 3 chr4 17486096 17486401 -184841946 + AluYa5 SINE Alu 1 304 -7 26546 133 11 30 chr4 17486401 17487049 -184841298 + L1PA8A LINE L1 5783 6442 -4 22 0 0 0 chr4 17487052 17487074 -184841273 + AT_rich Low_complexity Low_complexity 1 22 0 612 289 15 5 chr4 17487147 17487348 -184840999 + MIR SINE MIR 10 212 -50 389 261 149 27 chr4 17487369 17487557 -184840790 + L2 LINE L2 3103 3313 0 26 0 0 0 chr4 17487600 17487626 -184840721 + AT_rich Low_complexity Low_complexity 1 26 0 329 343 32 95 chr4 17489240 17489448 -184838899 + L2 LINE L2 2926 3103 -169 345 244 89 44 chr4 17489448 17489628 -184838719 - MER5A DNA MER1_type 0 189 2 329 343 32 95 chr4 17489628 17489789 -184838558 + L2 LINE L2 3103 3272 0 232 233 0 0 chr4 17489790 17489833 -184838514 + (TG)n Simple_repeat Simple_repeat 2 44 0 227 167 42 0 chr4 17489835 17489883 -184838464 - L1MC4 LINE L1 -1339 6703 6654 2287 122 91 49 chr4 17490049 17490458 -184837889 + MSTA LTR MaLR 1 426 -2 368 367 8 0 chr4 17491378 17491498 -184836849 + L2 LINE L2 3112 3232 -40 1634 191 3 23 chr4 17492864 17493163 -184835184 - AluJo SINE Alu -15 297 5 453 83 125 14 chr4 17493271 17493343 -184835004 - MADE1 DNA Mariner 0 80 1 194 250 105 13 chr4 17493879 17493955 -184834392 - L2 LINE L2 -524 2790 2708 417 274 53 0 chr4 17494343 17494456 -184833891 + L2 LINE L2 3190 3308 -5 2116 106 3 0 chr4 17494627 17494945 -184833402 + AluSx SINE Alu 1 319 0 213 39 0 0 chr4 17495073 17495099 -184833248 + (CA)n Simple_repeat Simple_repeat 2 27 0 336 278 75 29 chr4 17495380 17495553 -184832794 + L1MA9 LINE L1 6084 6264 -48 905 138 0 0 chr4 17495573 17495703 -184832644 - FLAM_C SINE Alu -8 135 6 199 54 54 0 chr4 17495725 17495762 -184832585 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 326 331 31 0 chr4 17495781 17495911 -184832436 - MIR SINE MIR -26 236 103 369 338 14 7 chr4 17496292 17496437 -184831910 + L2 LINE L2 2722 2867 -447 399 260 114 8 chr4 17496740 17496863 -184831484 + L2 LINE L2 3178 3313 0 349 264 62 23 chr4 17497379 17497508 -184830839 - MIR SINE MIR -54 208 75 516 245 77 0 chr4 17497960 17498103 -184830244 + MIR SINE MIR 71 224 -38 198 103 0 0 chr4 17498789 17498818 -184829529 + (CAT)n Simple_repeat Simple_repeat 2 30 0 341 311 1 23 chr4 17498844 17498956 -184829391 - MIR SINE MIR -43 165 56 673 258 6 36 chr4 17498960 17499165 -184829182 + MLT1E LTR MaLR 1 196 -359 27187 113 52 7 chr4 17499947 17504082 -184824265 + L1PA7 LINE L1 11 4332 -1814 5999 44 0 1 chr4 17504082 17504756 -184823591 + L1PA6 LINE L1 5472 6149 -5 * 7901 85 8 0 chr4 17504751 17506611 -184821736 + L1PA7 LINE L1 4316 6154 0 280 302 12 0 chr4 17506659 17506745 -184821602 + MER117 DNA MER1_type 5 91 -106 317 285 31 39 chr4 17507444 17507576 -184820771 - MIR3 SINE MIR -27 181 49 225 0 0 0 chr4 17508611 17508636 -184819711 + (T)n Simple_repeat Simple_repeat 1 25 0 257 292 158 33 chr4 17508764 17509004 -184819343 - L2 LINE L2 0 3313 3044 720 256 30 47 chr4 17509201 17509435 -184818912 + MIR SINE MIR 21 250 -12 324 347 41 34 chr4 17509983 17510130 -184818217 - L2 LINE L2 0 3272 3125 21 0 0 0 chr4 17510246 17510267 -184818080 + AT_rich Low_complexity Low_complexity 1 21 0 2021 125 7 0 chr4 17510788 17511069 -184817278 - AluSp SINE Alu -28 285 3 789 301 4 4 chr4 17511855 17512084 -184816263 - MIR SINE MIR 0 262 34 2320 179 65 7 chr4 17512691 17513094 -184815253 - MSTB LTR MaLR 0 426 1 181 340 0 0 chr4 17514045 17514092 -184814255 + L2 LINE L2 3144 3190 -82 429 200 59 0 chr4 17514341 17514426 -184813921 + MER91B DNA MER1_type 40 129 -61 280 236 0 154 chr4 17514444 17514554 -184813793 + MER91B DNA MER1_type 88 180 -10 386 319 29 67 chr4 17514562 17514800 -184813547 + MIR SINE MIR 33 261 -1 2245 116 0 10 chr4 17515731 17516041 -184812306 - AluSx SINE Alu -5 307 1 2826 10 0 3 chr4 17516566 17516876 -184811471 + AluYb8 SINE Alu 1 309 -9 322 335 139 6 chr4 17517043 17517201 -184811146 + MIR SINE MIR 8 186 -76 333 269 0 37 chr4 17517715 17517823 -184810524 + MLT1H LTR MaLR 59 162 -387 2981 180 63 12 chr4 17518174 17518763 -184809584 + L1MB8 LINE L1 5551 6169 -9 258 314 153 16 chr4 17519311 17519435 -184808912 + L2 LINE L2 3127 3267 -5 243 311 61 44 chr4 17519445 17519599 -184808748 - MIR SINE MIR -60 148 35 230 0 0 32 chr4 17520710 17520741 -184807606 + (GA)n Simple_repeat Simple_repeat 1 30 0 446 200 285 38 chr4 17520884 17521055 -184807292 + MIR SINE MIR 34 245 -17 859 271 20 24 chr4 17521411 17521658 -184806689 + MIR SINE MIR 17 262 0 210 329 14 0 chr4 17521704 17521774 -184806573 - L2 LINE L2 -1 3312 3242 1581 194 18 0 chr4 17523270 17523553 -184804794 - AluJo SINE Alu -19 293 6 2585 50 0 3 chr4 17527208 17527511 -184800836 - AluY SINE Alu -9 302 1 2861 214 59 24 chr4 17527737 17528500 -184799847 + Charlie5 DNA MER1_type 1 790 -1822 378 185 0 0 chr4 17528529 17528594 -184799753 + Charlie5 DNA MER1_type 2519 2583 -29 769 321 138 18 chr4 17528665 17529048 -184799299 + L2 LINE L2 2548 2976 -338 610 242 45 22 chr4 17529833 17530011 -184798336 - Charlie8 DNA MER1_type -2233 184 3 413 299 43 6 chr4 17530033 17530197 -184798150 - MIR SINE MIR -6 256 87 219 114 0 0 chr4 17530290 17530325 -184798022 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 255 240 0 60 chr4 17530904 17531004 -184797343 + L1MC4 LINE L1 6610 6703 -1339 578 189 45 0 chr4 17531291 17531402 -184796945 + MER20 DNA MER1_type 1 116 -103 190 288 14 129 chr4 17531618 17531757 -184796590 + MIR SINE MIR 75 197 -65 201 133 0 0 chr4 17531780 17531810 -184796537 + (CCA)n Simple_repeat Simple_repeat 2 31 0 371 276 0 0 chr4 17531858 17531945 -184796402 - L2 LINE L2 0 3272 3186 877 196 103 14 chr4 17532692 17532906 -184795441 + MIR SINE MIR 9 241 -21 230 279 164 25 chr4 17533105 17533227 -184795120 + L3b LINE CR1 1322 1460 -123 2403 138 11 27 chr4 17533837 17534207 -184794140 + THE1B LTR MaLR 1 364 0 1146 209 5 14 chr4 17534558 17534768 -184793579 + MER63A DNA MER1_type 3 210 0 180 312 46 73 chr4 17534902 17535011 -184793336 + L2 LINE L2 3155 3260 -12 2213 170 28 0 chr4 17535379 17535732 -184792615 + MLT1A1 LTR MaLR 3 365 0 2329 103 0 6 chr4 17536565 17536876 -184791471 - AluSc SINE Alu 0 309 1 1458 195 53 55 chr4 17537014 17537455 -184790892 + MLT1C LTR MaLR 13 498 -7 291 266 179 6 chr4 17538681 17538821 -184789526 - MIR SINE MIR -78 184 16 235 239 28 14 chr4 17539007 17539078 -184789269 + MER117 DNA MER1_type 72 143 -54 706 214 41 83 chr4 17539285 17539551 -184788796 - MER112 DNA MER1_type 0 256 2 249 257 163 74 chr4 17539671 17539873 -184788474 - L3 LINE CR1 -255 1322 1103 236 231 15 15 chr4 17539911 17539976 -184788371 - MIR SINE MIR 0 262 198 329 318 52 44 chr4 17540175 17540436 -184787911 - MLT1K LTR MaLR -243 345 13 337 320 167 0 chr4 17540453 17540609 -184787738 - MIR SINE MIR -80 182 1 370 307 12 48 chr4 17540870 17541036 -184787311 - MIR SINE MIR -61 201 42 927 234 11 0 chr4 17541226 17541414 -184786933 + MER58A DNA MER1_type 35 224 0 639 296 24 24 chr4 17541950 17542163 -184786184 + MIR SINE MIR 50 262 0 193 263 35 0 chr4 17542163 17542220 -184786127 - MIR SINE MIR -13 249 191 202 237 197 0 chr4 17542639 17542715 -184785632 + MIR SINE MIR 122 212 -50 594 307 22 26 chr4 17543391 17543619 -184784728 - MIR SINE MIR -34 228 2 180 77 0 0 chr4 17544115 17544141 -184784206 + (CCTG)n Simple_repeat Simple_repeat 2 27 0 * 554 191 25 29 chr4 17544138 17544379 -184783968 + CT-rich Low_complexity Low_complexity 1 240 0 1088 140 38 11 chr4 17544955 17545141 -184783206 + MER20 DNA MER1_type 24 214 -5 233 290 89 40 chr4 17545843 17545967 -184782380 - MIR SINE MIR -98 164 35 195 182 68 0 chr4 17546011 17546055 -184782292 + L2 LINE L2 3219 3265 -7 321 68 0 0 chr4 17546099 17546143 -184782204 + (CA)n Simple_repeat Simple_repeat 1 44 0 1186 202 32 12 chr4 17546389 17546636 -184781711 - L1MD2 LINE L1 -1 6358 6107 236 329 61 12 chr4 17546801 17546883 -184781464 - L2 LINE L2 -81 3191 3106 21 0 0 0 chr4 17546932 17546953 -184781394 + AT_rich Low_complexity Low_complexity 1 21 0 204 243 0 86 chr4 17547795 17547865 -184780482 - L2 LINE L2 -21 3292 3229 188 239 75 88 chr4 17548123 17548282 -184780065 - L2 LINE L2 -216 3056 2900 * 288 291 25 82 chr4 17548279 17548437 -184779910 + MIR SINE MIR 36 184 -78 362 121 15 0 chr4 17550599 17550665 -184777682 + GA-rich Low_complexity Low_complexity 2 68 0 739 210 55 45 chr4 17550717 17550917 -184777430 - MIR SINE MIR -8 254 53 1305 247 60 11 chr4 17551279 17551627 -184776720 + MLT1A1 LTR MaLR 1 365 0 532 332 59 13 chr4 17551777 17552015 -184776332 - MIR SINE MIR -3 259 11 1827 255 83 57 chr4 17552275 17552874 -184775473 + MLT1E3 LTR MaLR 1 615 -9 562 79 0 0 chr4 17552926 17553002 -184775345 - AluY SINE Alu -1 309 234 1309 77 0 6 chr4 17553011 17553181 -184775166 - AluY SINE Alu -142 169 1 276 351 104 19 chr4 17554699 17554853 -184773494 + MIR3 SINE MIR 35 201 -7 1058 231 77 5 chr4 17556119 17556327 -184772020 - MER58A DNA MER1_type 0 224 2 306 335 31 25 chr4 17556518 17556679 -184771668 + MIR3 SINE MIR 24 185 -23 347 56 19 0 chr4 17556682 17556736 -184771611 + (TTTTG)n Simple_repeat Simple_repeat 2 56 0 214 287 160 0 chr4 17556798 17556892 -184771455 + MIR SINE MIR 98 206 -56 1990 143 0 10 chr4 17557077 17557370 -184770977 + AluSx SINE Alu 1 290 -22 258 269 0 15 chr4 17557681 17557748 -184770599 - MIR SINE MIR -111 151 86 180 97 0 0 chr4 17558036 17558067 -184770280 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 1564 197 59 36 chr4 17558485 17558842 -184769505 + MLT1A1 LTR MaLR 1 501 -4 209 316 29 79 chr4 17559353 17559492 -184768855 - MIR SINE MIR -127 135 4 21 0 0 0 chr4 17559885 17559906 -184768441 + AT_rich Low_complexity Low_complexity 1 21 0 743 269 118 56 chr4 17560219 17560651 -184767696 - LTR33A LTR ERVL 0 523 65 417 299 67 0 chr4 17560871 17561005 -184767342 + MIR SINE MIR 46 188 -74 355 164 0 0 chr4 17561559 17561614 -184766733 + AluSq/x SINE Alu 71 125 -178 3203 109 7 70 chr4 17561714 17561786 -184766561 - L1PA8A LINE L1 -579 5552 5477 2748 26 0 0 chr4 17561786 17562091 -184766256 - AluYa5 SINE Alu -6 305 1 3203 109 7 70 chr4 17562091 17562743 -184765604 - L1PA8A LINE L1 -654 5477 4860 9558 136 34 5 chr4 17562843 17564353 -184763994 - L1M1 LINE L1 -4868 2697 1144 224 67 0 83 chr4 17564463 17564523 -184763824 + (GGAA)n Simple_repeat Simple_repeat 3 57 0 384 275 74 62 chr4 17564905 17565149 -184763198 - MIR SINE MIR -9 253 7 295 303 10 10 chr4 17565185 17565284 -184763063 - L2 LINE L2 -2 3270 3172 1775 91 4 24 chr4 17567259 17567512 -184760835 - AluSg SINE Alu -5 305 58 262 338 47 14 chr4 17568653 17568801 -184759546 + MIR SINE MIR 110 262 0 569 82 39 12 chr4 17569169 17569403 -184758944 + AluSx SINE Alu 1 308 -1 1502 225 15 18 chr4 17569508 17569841 -184758506 - MER58B DNA MER1_type -1 340 9 474 216 30 52 chr4 17570723 17570857 -184757490 - MER5A DNA MER1_type -22 167 37 2233 60 18 25 chr4 17571066 17571181 -184757166 + AluY SINE Alu 10 124 -187 333 0 0 0 chr4 17571181 17571218 -184757129 + (CA)n Simple_repeat Simple_repeat 2 38 0 2233 60 18 25 chr4 17571218 17571387 -184756960 + AluY SINE Alu 124 292 -19 306 279 0 13 chr4 17571653 17571732 -184756615 - L2 LINE L2 -58 3214 3137 227 302 12 35 chr4 17571820 17571906 -184756441 + L2 LINE L2 3230 3313 0 995 282 93 36 chr4 17571932 17572566 -184755781 - L1MC4a LINE L1 -1883 5925 5256 530 139 0 50 chr4 17573814 17573880 -184754467 + MER53 DNA DNA 6 67 -122 1386 169 8 37 chr4 17573880 17574123 -184754224 - MER46A DNA MER2_type 0 236 1 530 139 0 50 chr4 17574123 17574157 -184754190 + MER53 DNA DNA 67 101 -88 22 35 0 0 chr4 17574262 17574291 -184754056 + AT_rich Low_complexity Low_complexity 1 29 0 182 88 0 29 chr4 17574438 17574472 -184753875 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 640 250 12 12 chr4 17574870 17575030 -184753317 - MIR SINE MIR -52 210 51 419 337 74 10 chr4 17575378 17575580 -184752767 - MIR SINE MIR 0 262 48 423 306 100 18 chr4 17575612 17575841 -184752506 + MIR SINE MIR 14 261 -1 293 309 12 0 chr4 17575845 17575926 -184752421 + (CTA)n Simple_repeat Simple_repeat 1 82 0 216 338 71 26 chr4 17576785 17576939 -184751408 + L2 LINE L2 2924 3084 -188 181 312 26 39 chr4 17576964 17577041 -184751306 - L2 LINE L2 -18 3254 3179 348 331 46 23 chr4 17577123 17577298 -184751049 - L2 LINE L2 -189 3083 2905 263 303 20 10 chr4 17578159 17578258 -184750089 + LTR67 LTR ERVL 458 557 0 578 243 9 80 chr4 17579142 17579368 -184748979 + MLT1H LTR MaLR 21 230 -319 237 311 22 11 chr4 17579620 17579710 -184748637 + L2 LINE L2 3175 3265 -48 1776 198 3 14 chr4 17580096 17580471 -184747876 + MLT1A1 LTR MaLR 1 365 0 242 324 101 34 chr4 17580591 17580739 -184747608 - L2 LINE L2 -177 3095 2938 635 208 8 16 chr4 17582113 17582238 -184746109 + FLAM_A SINE Alu 1 124 -9 230 346 39 24 chr4 17582488 17582615 -184745732 - L2 LINE L2 -5 3267 3139 303 301 68 0 chr4 17582987 17583090 -184745257 + L2 LINE L2 3203 3312 -1 240 281 67 56 chr4 17583358 17583447 -184744900 + L2 LINE L2 3183 3272 0 293 261 20 149 chr4 17583521 17583816 -184744531 + MER102b DNA MER1_type 37 293 -48 482 262 40 0 chr4 17585429 17585578 -184742769 - L2 LINE L2 -557 2757 2603 3660 183 56 28 chr4 17585588 17586199 -184742148 + L1MB7 LINE L1 4725 5318 -866 2195 112 0 0 chr4 17586199 17586494 -184741853 + AluSg SINE Alu 14 308 -2 3660 183 56 28 chr4 17586494 17587288 -184741059 + L1MB7 LINE L1 5318 6179 -5 374 324 22 50 chr4 17587432 17587611 -184740736 - MIR SINE MIR -8 254 81 273 304 152 27 chr4 17588362 17588474 -184739873 + MIR3 SINE MIR 68 193 -15 1174 234 97 25 chr4 17588511 17588942 -184739405 - MLT1C LTR MaLR -5 462 1 497 256 74 17 chr4 17588942 17589118 -184739229 - MIR SINE MIR -3 259 74 187 179 26 0 chr4 17589259 17589298 -184739049 + L2 LINE L2 3274 3313 0 24 67 0 0 chr4 17590761 17590806 -184737541 + AT_rich Low_complexity Low_complexity 1 45 0 21 36 0 0 chr4 17590876 17590904 -184737443 + AT_rich Low_complexity Low_complexity 1 28 0 282 56 0 0 chr4 17591074 17591110 -184737237 + (TAA)n Simple_repeat Simple_repeat 2 37 0 260 348 29 65 chr4 17592053 17592191 -184736156 - L2 LINE L2 -1 3271 3139 21 0 0 0 chr4 17592191 17592212 -184736135 + AT_rich Low_complexity Low_complexity 1 21 0 304 296 72 0 chr4 17592546 17592698 -184735649 - MER103 DNA DNA 0 166 4 432 108 0 54 chr4 17593524 17593598 -184734749 + MSTD LTR MaLR 4 73 -323 244 267 40 0 chr4 17593607 17593682 -184734665 + MIR SINE MIR 184 261 -1 416 268 0 0 chr4 17593747 17593844 -184734503 - MIR SINE MIR -70 192 96 1306 195 21 89 chr4 17594016 17594442 -184733905 + MLT2C1 LTR ERVL 1 397 0 578 313 52 17 chr4 17594756 17594986 -184733361 + L3 LINE CR1 1331 1568 -9 21 0 0 0 chr4 17595874 17595895 -184732452 + AT_rich Low_complexity Low_complexity 1 21 0 354 302 0 65 chr4 17595911 17596050 -184732297 + MIR3 SINE MIR 3 132 -76 496 231 88 38 chr4 17596105 17596265 -184732082 - MIR SINE MIR -46 216 49 222 294 29 0 chr4 17596695 17596763 -184731584 - L2 LINE L2 -359 2954 2885 473 182 0 0 chr4 17596763 17596840 -184731507 + Tigger5 DNA MER2_type 1 77 -2246 367 218 13 0 chr4 17596841 17596919 -184731428 - Tigger5 DNA MER2_type -3 2320 2242 * 399 210 12 0 chr4 17596909 17596990 -184731357 + Tigger5 DNA MER2_type 2242 2323 0 1738 197 55 13 chr4 17597103 17597483 -184730864 - MSTD LTR MaLR 0 396 1 628 342 53 38 chr4 17597495 17598001 -184730346 + L2 LINE L2 2802 3313 0 186 174 275 14 chr4 17598359 17598428 -184729919 + L2 LINE L2 3185 3271 -1 273 119 0 0 chr4 17599157 17599199 -184729148 + (CA)n Simple_repeat Simple_repeat 1 42 0 2909 167 11 9 chr4 17599227 17599777 -184728570 + MER89 LTR ERV1 2 552 -7 428 145 36 14 chr4 17599781 17599919 -184728428 + (TA)n Simple_repeat Simple_repeat 2 142 0 29 60 0 0 chr4 17599960 17600010 -184728337 + AT_rich Low_complexity Low_complexity 1 50 0 252 341 44 22 chr4 17600167 17600302 -184728045 + MIR SINE MIR 52 189 -73 287 305 92 67 chr4 17601755 17601919 -184726428 - MIR3 SINE MIR -4 204 37 237 183 0 33 chr4 17602290 17602350 -184725997 + (TAGA)n Simple_repeat Simple_repeat 2 59 0 357 242 24 32 chr4 17604453 17604577 -184723770 - MIR SINE MIR -48 214 92 208 373 25 8 chr4 17604789 17604907 -184723440 - MIR SINE MIR -84 178 59 357 141 0 0 chr4 17605103 17605174 -184723173 + (GAATG)n Simple_repeat Simple_repeat 2 72 0 1036 196 50 122 chr4 17605235 17605638 -184722709 + MLT1A2 LTR MaLR 1 374 0 339 321 30 8 chr4 17607970 17608101 -184720246 + MIR SINE MIR 117 250 -12 201 175 0 0 chr4 17608235 17608275 -184720072 + (TGAA)n Simple_repeat Simple_repeat 3 42 0 2489 84 0 0 chr4 17608613 17608923 -184719424 - AluSq SINE Alu -3 310 1 251 159 29 43 chr4 17609378 17609447 -184718900 + MLT1F1 LTR MaLR 52 119 -448 981 211 143 63 chr4 17609462 17609874 -184718473 + L1MD3 LINE L1 7384 7828 -167 193 346 105 15 chr4 17610481 17610614 -184717733 + MIR3 SINE MIR 41 185 -23 997 176 0 0 chr4 17611143 17611308 -184717039 - FRAM SINE Alu -12 164 1 406 306 77 21 chr4 17611322 17611792 -184716555 + L1ME4a LINE L1 5603 6098 -23 241 278 0 0 chr4 17612276 17612330 -184716017 + GA-rich Low_complexity Low_complexity 1 54 0 204 234 2 0 chr4 17612914 17612968 -184715379 + GA-rich Low_complexity Low_complexity 3 40 0 1845 150 42 0 chr4 17613219 17613505 -184714842 + AluSx SINE Alu 1 298 -14 301 185 0 0 chr4 17613505 17613559 -184714788 + L1MC4 LINE L1 6649 6702 -1340 331 247 0 43 chr4 17613570 17613663 -184714684 + L1MC4 LINE L1 6614 6702 -1340 219 336 25 25 chr4 17615046 17615165 -184713182 - L3 LINE CR1 -126 1451 1333 197 259 62 49 chr4 17615186 17615267 -184713080 - L2 LINE L2 -4 3268 3187 245 298 61 26 chr4 17615807 17615921 -184712426 + L2 LINE L2 3191 3308 -5 2259 108 7 0 chr4 17615944 17616284 -184712063 - AluSc SINE Alu 0 342 1 2172 108 3 3 chr4 17616922 17617210 -184711137 + AluSx SINE Alu 1 288 -24 1589 242 150 21 chr4 17617267 17617842 -184710505 + MLT1E1 LTR MaLR 2 650 -4 2115 121 0 0 chr4 17618061 17618371 -184709976 - AluSx SINE Alu 0 310 1 2409 78 0 7 chr4 17618382 17618690 -184709657 - AluY SINE Alu -5 306 1 269 358 0 0 chr4 17618709 17618776 -184709571 + MIR SINE MIR 37 103 -105 443 329 108 18 chr4 17618825 17619047 -184709300 - MIR SINE MIR -1 261 20 244 277 109 20 chr4 17619996 17620097 -184708250 - L2 LINE L2 -8 3264 3155 2041 134 0 0 chr4 17620419 17620711 -184707636 + AluSx SINE Alu 1 292 -20 212 339 122 17 chr4 17622843 17622958 -184705389 + L2 LINE L2 3146 3272 0 2151 101 51 3 chr4 17623207 17623503 -184704844 + AluSg SINE Alu 1 310 0 896 181 62 0 chr4 17623930 17624140 -184704207 - L1MA9 LINE L1 -32 6280 6058 214 356 48 19 chr4 17624203 17624307 -184704040 + L2 LINE L2 3128 3234 -38 470 197 16 25 chr4 17624583 17624705 -184703642 + MER53 DNA DNA 1 121 -68 193 203 68 51 chr4 17625648 17625707 -184702640 + L2 LINE L2 3213 3272 0 327 194 0 0 chr4 17625840 17625902 -184702445 + Alu SINE Alu 241 302 0 201 305 23 62 chr4 17626037 17626165 -184702182 - L3b LINE CR1 -166 1417 1295 221 258 15 0 chr4 17626492 17626558 -184701789 + (TTCA)n Simple_repeat Simple_repeat 2 68 0 400 270 0 86 chr4 17626608 17626771 -184701576 - MIR SINE MIR -89 173 25 182 287 70 70 chr4 17628356 17628440 -184699907 - MIR SINE MIR -16 246 160 2284 114 0 13 chr4 17628440 17628746 -184699601 - AluSx SINE Alu -10 302 1 182 287 70 70 chr4 17628746 17628790 -184699557 - MIR SINE MIR -101 161 118 492 18 0 0 chr4 17629387 17629444 -184698903 + (TG)n Simple_repeat Simple_repeat 1 57 0 201 176 274 29 chr4 17629471 17629573 -184698774 + MIR3 SINE MIR 15 141 -67 2026 115 3 30 chr4 17630077 17630382 -184697965 + AluSx SINE Alu 1 297 -15 507 232 46 46 chr4 17630549 17630700 -184697647 - L2 LINE L2 0 3313 3163 294 238 159 24 chr4 17634501 17634627 -184693720 - L2 LINE L2 -12 3301 3159 336 253 0 0 chr4 17634819 17634894 -184693453 - MIR SINE MIR -10 252 178 363 297 51 7 chr4 17634922 17635060 -184693287 + L2 LINE L2 3170 3313 0 333 305 13 58 chr4 17635071 17635228 -184693119 - MIR SINE MIR -63 145 2 304 299 19 78 chr4 17635442 17635596 -184692751 + MIR SINE MIR 67 211 -51 920 128 0 8 chr4 17635775 17635908 -184692439 + AluSx SINE Alu 1 132 -181 1107 137 0 23 chr4 17635945 17636120 -184692227 + AluSx SINE Alu 122 292 -20 2479 82 99 6 chr4 17636298 17636641 -184691706 - THE1C LTR MaLR 0 375 1 405 0 0 0 chr4 17636988 17637033 -184691314 + (CA)n Simple_repeat Simple_repeat 1 45 0 345 47 0 0 chr4 17637348 17637391 -184690956 + (CA)n Simple_repeat Simple_repeat 2 44 0 251 235 130 7 chr4 17637591 17637709 -184690638 - MIR SINE MIR -46 216 2 380 264 245 6 chr4 17637725 17637884 -184690463 + MIR SINE MIR 66 262 0 21 36 0 0 chr4 17639893 17639921 -184688426 + AT_rich Low_complexity Low_complexity 1 28 0 253 266 0 43 chr4 17640286 17640380 -184687967 - L1MC4 LINE L1 -1339 6703 6614 333 0 0 0 chr4 17640383 17640420 -184687927 + (TG)n Simple_repeat Simple_repeat 2 38 0 2273 96 14 0 chr4 17640425 17640716 -184687631 - AluSx SINE Alu -17 295 1 411 320 36 32 chr4 17640724 17640974 -184687373 - L1MC4 LINE L1 -360 5810 5589 21 0 0 0 chr4 17642108 17642129 -184686218 + AT_rich Low_complexity Low_complexity 1 21 0 799 296 4 4 chr4 17642655 17642881 -184685466 - MIR SINE MIR 0 262 37 2413 90 3 0 chr4 17643200 17643510 -184684837 - AluSq SINE Alu -2 311 1 22 80 0 0 chr4 17644192 17644242 -184684105 + AT_rich Low_complexity Low_complexity 1 50 0 488 316 47 0 chr4 17644398 17644588 -184683759 - MIR SINE MIR -61 201 3 1113 314 67 25 chr4 17645251 17645849 -184682498 + L2 LINE L2 2136 2758 -556 194 208 21 21 chr4 17646248 17646296 -184682051 + L2 LINE L2 3266 3313 0 573 258 35 76 chr4 17646501 17646815 -184681532 + L1ME4a LINE L1 5589 5889 -232 3354 128 23 2 chr4 17647124 17647609 -184680738 - MER1A DNA MER1_type -3 526 32 855 188 0 20 chr4 17647635 17647784 -184680563 - AluJo/FRAM SINE Alu -1 311 166 2309 92 3 7 chr4 17647787 17648092 -184680255 + AluSg SINE Alu 1 304 -6 545 318 10 16 chr4 17648469 17648661 -184679686 - MIR SINE MIR -59 203 13 1097 193 32 16 chr4 17648749 17648998 -184679349 + L1MB7 LINE L1 5688 5940 -244 540 245 117 0 chr4 17648999 17649162 -184679185 + MIR SINE MIR 67 248 -14 649 270 71 22 chr4 17649258 17649484 -184678863 + MIR SINE MIR 26 262 0 365 204 51 71 chr4 17649638 17649736 -184678611 + L2 LINE L2 3136 3231 -41 271 290 14 0 chr4 17650016 17650085 -184678262 + MIR SINE MIR 33 102 -106 182 254 200 0 chr4 17650132 17650187 -184678160 + MIR3 SINE MIR 115 180 -28 587 315 25 68 chr4 17650466 17650768 -184677579 - L2 LINE L2 0 3313 3030 1061 192 37 28 chr4 17650768 17650982 -184677365 - MER20 DNA MER1_type -2 217 2 587 315 25 68 chr4 17650982 17651076 -184677271 - L2 LINE L2 -283 3030 2934 348 328 106 46 chr4 17651043 17651559 -184676788 - L2 LINE L2 -49 3223 2672 * 705 261 32 16 chr4 17651568 17651756 -184676591 + MIR SINE MIR 65 255 -7 278 347 113 16 chr4 17652440 17652564 -184675783 + L2 LINE L2 3127 3262 -10 461 240 32 55 chr4 17652611 17652778 -184675569 - MIR SINE MIR -43 165 44 264 346 0 0 chr4 17652769 17652847 -184675500 + MIR3 SINE MIR 114 191 -17 * 248 273 61 10 chr4 17653454 17653553 -184674794 + L3 LINE CR1 1180 1283 -294 207 309 128 38 chr4 17653924 17654131 -184674216 - L2 LINE L2 -1 3312 3074 2210 124 0 0 chr4 17654131 17654437 -184673910 - AluSx SINE Alu -6 306 1 207 309 128 38 chr4 17654437 17654494 -184673853 - L2 LINE L2 -239 3074 3024 183 406 10 10 chr4 17654781 17654882 -184673465 - MIR SINE MIR -149 113 13 1337 192 192 6 chr4 17655645 17655989 -184672358 + MLT1C LTR MaLR 53 460 -7 281 325 133 0 chr4 17656136 17656256 -184672091 + L2 LINE L2 3137 3272 0 2181 112 0 3 chr4 17656267 17656563 -184671784 - AluSg SINE Alu -14 296 2 730 270 87 93 chr4 17656631 17657116 -184671231 - L2 LINE L2 0 3313 2832 23 54 0 0 chr4 17658002 17658039 -184670308 + AT_rich Low_complexity Low_complexity 1 37 0 251 176 111 65 chr4 17658122 17658230 -184670117 - MIR3 SINE MIR -92 116 4 280 308 51 0 chr4 17658245 17658323 -184670024 + MIR SINE MIR 111 192 -70 456 265 13 46 chr4 17660249 17660400 -184667947 + L2 LINE L2 3161 3306 -7 276 372 33 0 chr4 17661085 17661206 -184667141 - L2 LINE L2 -5 3267 3143 2178 113 0 3 chr4 17661247 17661538 -184666809 + AluSx SINE Alu 3 292 -20 509 189 6 63 chr4 17663192 17663351 -184664996 - L2 LINE L2 0 3313 3164 483 213 130 53 chr4 17663490 17663562 -184664785 - MIR SINE MIR -12 250 185 2086 123 3 10 chr4 17663562 17663870 -184664477 + AluSx SINE Alu 1 306 -6 483 213 130 53 chr4 17663870 17663966 -184664381 - MIR SINE MIR -77 185 69 213 349 85 23 chr4 17664096 17664225 -184664122 - MIR SINE MIR -110 152 16 781 233 135 47 chr4 17664237 17664555 -184663792 + MER7A DNA MER2_type 1 344 -2 210 37 0 0 chr4 17665162 17665189 -184663158 + (CAA)n Simple_repeat Simple_repeat 2 28 0 2243 106 0 0 chr4 17665189 17665491 -184662856 + AluSg SINE Alu 1 302 -8 340 211 105 0 chr4 17666207 17666283 -184662064 - MIR SINE MIR -25 237 154 285 192 0 0 chr4 17666815 17666867 -184661480 + MIR SINE MIR 50 101 -161 227 192 53 72 chr4 17667714 17667807 -184660540 - MIR SINE MIR -7 201 117 620 250 41 51 chr4 17668395 17668591 -184659756 + MIR SINE MIR 25 218 -44 236 219 110 27 chr4 17668618 17668691 -184659656 + MER116 DNA Mariner 1 79 -1 233 292 15 0 chr4 17668727 17668792 -184659555 + L2 LINE L2 3004 3069 -203 289 265 165 45 chr4 17669005 17669266 -184659081 - L2 LINE L2 -209 3063 2776 387 244 134 8 chr4 17669266 17669385 -184658962 + MER96 DNA MER1_type? 42 175 0 255 320 53 53 chr4 17669386 17669536 -184658811 - L2 LINE L2 -536 2778 2629 439 199 21 9 chr4 17669911 17669925 -184658422 + L1MC3 LINE L1 6619 6631 -1154 1606 164 29 4 chr4 17669925 17670220 -184658127 + AluJb SINE Alu 1 302 0 439 199 21 9 chr4 17670220 17670306 -184658041 + L1MC3 LINE L1 6631 6703 -1082 * 788 183 37 12 chr4 17670304 17670468 -184657879 + L1MC3 LINE L1 6918 7085 -700 281 161 125 40 chr4 17670468 17670565 -184657782 + MLT1F1 LTR MaLR 35 166 -383 2768 198 16 46 chr4 17670574 17670988 -184657359 + L1MC3 LINE L1 7197 7589 -196 1234 197 53 4 chr4 17670988 17671216 -184657131 + MER8 DNA MER2_type 1 239 0 2768 198 16 46 chr4 17671216 17671408 -184656939 + L1MC3 LINE L1 7589 7785 0 2325 110 0 0 chr4 17671669 17671968 -184656379 + AluSg SINE Alu 1 299 -11 482 291 0 0 chr4 17671968 17672095 -184656252 + MIR SINE MIR 80 206 -56 228 211 211 0 chr4 17672176 17672252 -184656095 - MIR SINE MIR -94 168 77 2501 64 0 10 chr4 17672754 17673067 -184655280 - AluY SINE Alu -1 310 1 994 167 5 21 chr4 17673671 17673863 -184654484 - MER53 DNA DNA 0 189 1 928 221 142 12 chr4 17674122 17674453 -184653894 + LTR37A LTR ERV1 53 426 0 2500 55 0 3 chr4 17674579 17674889 -184653458 - AluY SINE Alu -2 309 1 299 288 27 55 chr4 17675191 17675337 -184653010 + L2 LINE L2 3172 3313 0 931 55 0 0 chr4 17676565 17676674 -184651673 + THE1B LTR MaLR 1 109 -255 373 276 131 0 chr4 17677629 17677774 -184650573 + MIR SINE MIR 99 262 0 719 150 150 0 chr4 17678039 17678159 -184650188 - FRAM SINE Alu -19 157 20 22 0 0 0 chr4 17678360 17678382 -184649965 + AT_rich Low_complexity Low_complexity 1 22 0 387 171 73 0 chr4 17678568 17678650 -184649697 - Charlie8 DNA MER1_type -2152 265 178 735 223 13 46 chr4 17678749 17678948 -184649399 - MLT1A2 LTR MaLR -7 374 173 323 169 14 0 chr4 17678948 17679019 -184649328 + GA-rich Low_complexity Low_complexity 1 72 0 847 216 28 11 chr4 17679019 17679200 -184649147 - MLT1A2 LTR MaLR -187 187 4 327 340 82 19 chr4 17679906 17680112 -184648235 - MIR SINE MIR -11 251 33 254 335 103 46 chr4 17680138 17680332 -184648015 + L2 LINE L2 3044 3248 -24 752 266 15 5 chr4 17680668 17680871 -184647476 + MIR SINE MIR 18 222 -40 461 267 183 18 chr4 17682864 17683189 -184645158 + MLT1J2 LTR MaLR 77 450 0 193 29 59 0 chr4 17683631 17683665 -184644682 + (CAAAA)n Simple_repeat Simple_repeat 5 40 0 1292 144 0 10 chr4 17684806 17685014 -184643333 - MER1B DNA MER1_type 0 339 134 245 158 0 0 chr4 17685011 17685049 -184643298 - MER1B DNA MER1_type -299 38 1 * 203 284 0 30 chr4 17685052 17685119 -184643228 + MIR SINE MIR 160 224 -38 302 80 20 0 chr4 17686497 17686547 -184641800 + (TA)n Simple_repeat Simple_repeat 1 51 0 297 0 0 0 chr4 17686546 17686579 -184641768 + (TG)n Simple_repeat Simple_repeat 2 34 0 * 1934 132 45 3 chr4 17686913 17687200 -184641147 - AluSx SINE Alu -13 299 1 374 293 8 30 chr4 17687200 17687333 -184641014 + MIR SINE MIR 120 249 -13 2555 46 7 0 chr4 17687777 17688084 -184640263 - AluY SINE Alu -2 309 1 319 259 22 44 chr4 17688405 17688540 -184639807 + LTR67 LTR ERVL 426 557 0 219 309 69 117 chr4 17689477 17689768 -184638579 + L2 LINE L2 2930 3206 -66 2232 106 10 7 chr4 17689840 17690141 -184638206 + AluSx SINE Alu 1 302 -10 2270 121 3 6 chr4 17690312 17690625 -184637722 - AluSq SINE Alu -1 312 1 237 378 35 35 chr4 17690881 17691053 -184637294 + L2 LINE L2 3092 3263 -9 609 236 40 40 chr4 17691540 17691714 -184636633 - MIR SINE MIR 0 262 89 836 262 87 88 chr4 17691802 17692356 -184635991 - MLT1H1 LTR MaLR -2 553 1 198 342 25 13 chr4 17692785 17692864 -184635483 + MIR3 SINE MIR 84 163 -45 306 252 133 56 chr4 17692932 17693007 -184635340 - MER112 DNA MER1_type -106 154 86 315 0 0 0 chr4 17693007 17693042 -184635305 + (TG)n Simple_repeat Simple_repeat 2 36 0 306 252 133 56 chr4 17693042 17693109 -184635238 - MER112 DNA MER1_type -174 86 1 195 42 0 0 chr4 17693375 17693399 -184634948 + (A)n Simple_repeat Simple_repeat 1 24 0 641 276 183 29 chr4 17694197 17694574 -184633773 - L2 LINE L2 0 3313 2879 2600 39 0 19 chr4 17695291 17695603 -184632744 - AluY SINE Alu -5 306 1 216 0 0 0 chr4 17695661 17695685 -184632662 + (A)n Simple_repeat Simple_repeat 1 24 0 207 250 250 64 chr4 17695922 17696062 -184632285 + MIR SINE MIR 39 204 -58 2098 92 17 17 chr4 17696437 17696730 -184631617 - AluSx SINE Alu -19 293 1 336 309 13 54 chr4 17696744 17696893 -184631454 - MIR SINE MIR -2 260 118 225 191 16 63 chr4 17697128 17697191 -184631156 - MIR SINE MIR -62 146 87 246 62 0 0 chr4 17698124 17698156 -184630191 + (TG)n Simple_repeat Simple_repeat 1 32 0 295 268 143 0 chr4 17698365 17698477 -184629870 - MIR SINE MIR 0 262 135 323 299 42 87 chr4 17698703 17699084 -184629263 - L2 LINE L2 -1 3312 2949 27 62 0 0 chr4 17699891 17699939 -184628408 + AT_rich Low_complexity Low_complexity 1 48 0 228 70 35 35 chr4 17700056 17700113 -184628234 + (TAGA)n Simple_repeat Simple_repeat 3 59 0 598 323 68 64 chr4 17702632 17703362 -184624985 + HAL1 LINE L1 57 975 -1532 21 0 0 0 chr4 17703394 17703415 -184624932 + AT_rich Low_complexity Low_complexity 1 21 0 305 339 21 12 chr4 17703415 17703586 -184624761 + MIR SINE MIR 19 188 -66 2316 102 0 19 chr4 17703739 17704052 -184624295 + AluSc SINE Alu 1 307 -2 1933 153 46 22 chr4 17704071 17704437 -184623910 + THE1C LTR MaLR 1 375 0 315 243 75 26 chr4 17704975 17705091 -184623256 + MIR SINE MIR 3 121 -87 877 288 115 39 chr4 17705114 17705496 -184622851 - L2 LINE L2 -369 2945 2535 840 294 123 17 chr4 17705612 17706033 -184622314 + MLT1J LTR MaLR 42 507 -4 626 302 14 42 chr4 17706048 17706260 -184622087 - MIR SINE MIR 0 262 57 841 301 142 18 chr4 17707413 17707451 -184620896 + L2 LINE L2 2806 2838 -475 2335 99 0 0 chr4 17707451 17707755 -184620592 - AluSc SINE Alu -5 304 1 841 301 142 18 chr4 17707755 17708168 -184620179 + L2 LINE L2 2838 3313 0 446 256 31 8 chr4 17708256 17708385 -184619962 + Charlie8 DNA MER1_type 137 268 -2149 2240 99 0 0 chr4 17708461 17708754 -184619593 + AluSg SINE Alu 1 293 -17 263 278 14 42 chr4 17708766 17708838 -184619509 + L2 LINE L2 3168 3237 -35 350 294 55 0 chr4 17708865 17708974 -184619373 - MIR SINE MIR -111 151 37 1817 246 81 19 chr4 17709051 17709721 -184618626 - L1ME2 LINE L1 -7 6157 5447 440 240 16 24 chr4 17709828 17709953 -184618394 + MER63 DNA MER1_type 2 751 -85 300 303 197 19 chr4 17710601 17710809 -184617538 - MIR SINE MIR -8 254 10 242 377 150 0 chr4 17711107 17711274 -184617073 + MIR SINE MIR 58 249 -13 274 238 16 0 chr4 17711320 17711383 -184616964 + MLT1F LTR MaLR 20 83 -459 248 304 57 44 chr4 17711542 17711769 -184616578 + MLT1H1 LTR MaLR 311 540 -15 2058 157 98 0 chr4 17713067 17713456 -184614891 - MSTB1 LTR MaLR -5 427 1 287 234 25 29 chr4 17713471 17713626 -184614721 - MIR SINE MIR -112 150 34 222 288 144 0 chr4 17713657 17713768 -184614579 - MIR SINE MIR -15 247 121 180 111 0 0 chr4 17713817 17713844 -184614503 + (CA)n Simple_repeat Simple_repeat 2 28 0 327 286 108 35 chr4 17713942 17714145 -184614202 - MIR SINE MIR -16 246 29 334 317 24 32 chr4 17714495 17714618 -184613729 + MIR SINE MIR 1 122 -140 225 256 77 26 chr4 17715677 17715755 -184612592 - L3 LINE CR1 -5 1572 1491 242 313 16 0 chr4 17716692 17716756 -184611591 + MIR SINE MIR 9 73 -189 291 209 75 0 chr4 17716786 17716853 -184611494 + MIR SINE MIR 166 237 -25 220 342 13 0 chr4 17717241 17717317 -184611030 + L2 LINE L2 3197 3273 -40 228 67 0 0 chr4 17717330 17717360 -184610987 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 2206 109 17 3 chr4 17717529 17717831 -184610516 - AluSx SINE Alu -5 307 2 1513 181 40 23 chr4 17717885 17718189 -184610158 + AluJo SINE Alu 1 309 -3 205 189 0 0 chr4 17719394 17719431 -184608916 + MIR SINE MIR 222 258 -4 291 325 89 41 chr4 17719572 17719741 -184608606 - MIR SINE MIR -13 249 73 2199 89 0 20 chr4 17719742 17720045 -184608302 + AluSx SINE Alu 3 299 -13 311 361 68 35 chr4 17721083 17721449 -184606898 + L1ME LINE L1 5378 5755 -366 2286 67 3 0 chr4 17721510 17721830 -184606517 - AluY SINE Alu 0 321 1 21 0 0 0 chr4 17721920 17721941 -184606406 + AT_rich Low_complexity Low_complexity 1 21 0 433 298 55 37 chr4 17722310 17722528 -184605819 + L3 LINE CR1 1248 1469 -108 501 326 136 41 chr4 17722555 17723390 -184604957 + L2 LINE L2 2362 3310 -3 454 343 49 25 chr4 17724179 17724383 -184603964 + MIR SINE MIR 27 235 -27 424 326 76 43 chr4 17724630 17724862 -184603485 - L2 LINE L2 -866 2448 2202 270 0 0 0 chr4 17724862 17724892 -184603455 + (TG)n Simple_repeat Simple_repeat 2 31 0 424 326 76 43 chr4 17724892 17724960 -184603387 - L2 LINE L2 -1112 2202 2138 495 283 53 16 chr4 17724998 17725185 -184603162 + MER63A DNA MER1_type 1 194 -16 1366 130 0 5 chr4 17725337 17725537 -184602810 + AluSg/x SINE Alu 112 310 -2 547 279 117 6 chr4 17725960 17726139 -184602208 + MIR SINE MIR 57 255 -7 25 31 0 0 chr4 17727054 17727086 -184601261 + AT_rich Low_complexity Low_complexity 1 32 0 4073 215 14 24 chr4 17727089 17728192 -184600155 + L1MA9 LINE L1 5184 6274 -38 21 82 0 0 chr4 17728201 17728250 -184600097 + AT_rich Low_complexity Low_complexity 1 49 0 297 0 0 0 chr4 17728419 17728452 -184599895 + (CA)n Simple_repeat Simple_repeat 2 34 0 228 128 77 0 chr4 17728579 17728657 -184599690 + (TA)n Simple_repeat Simple_repeat 1 84 0 21 0 0 0 chr4 17728865 17728886 -184599461 + AT_rich Low_complexity Low_complexity 1 21 0 263 189 153 9 chr4 17728887 17728998 -184599349 + L1ME LINE L1 5277 5403 -2382 3724 195 95 18 chr4 17729028 17730112 -184598235 + Charlie1 DNA MER1_type 39 2507 -254 235 179 60 15 chr4 17730113 17730180 -184598167 + Charlie1 DNA MER1_type 2683 2752 -9 353 264 52 39 chr4 17730191 17730346 -184598001 + L1ME LINE L1 5410 5566 -600 585 238 54 36 chr4 17730372 17730540 -184597807 - MER58B DNA MER1_type 0 341 171 659 270 58 0 chr4 17730606 17730780 -184597567 - MIR SINE MIR -11 251 68 930 288 66 19 chr4 17731215 17731899 -184596448 + L2 LINE L2 2548 3311 -2 245 196 89 0 chr4 17731896 17731952 -184596395 + MIR SINE MIR 114 174 -88 * 587 216 22 8 chr4 17732015 17732149 -184596198 - MIR SINE MIR -48 214 79 367 278 176 0 chr4 17732939 17733126 -184595221 - MIR SINE MIR -11 251 32 187 304 101 0 chr4 17733687 17733756 -184594591 - L2 LINE L2 -16 3297 3222 404 252 36 36 chr4 17733758 17733897 -184594450 - MIR SINE MIR -1 261 123 219 88 0 0 chr4 17734264 17734298 -184594049 + (CA)n Simple_repeat Simple_repeat 1 34 0 264 258 8 92 chr4 17734438 17734558 -184593789 + MIR3 SINE MIR 58 167 -41 929 211 16 5 chr4 17735190 17735380 -184592967 - MER20 DNA MER1_type 0 219 28 226 234 65 0 chr4 17735679 17735756 -184592591 + L2 LINE L2 2899 2980 -292 304 290 60 0 chr4 17735874 17735974 -184592373 + MIR SINE MIR 86 191 -71 22 35 0 0 chr4 17736150 17736179 -184592168 + AT_rich Low_complexity Low_complexity 1 29 0 2405 106 3 0 chr4 17736266 17736578 -184591769 + AluSp SINE Alu 1 313 0 312 235 86 80 chr4 17737233 17737395 -184590952 - MER5A DNA MER1_type -25 164 2 435 256 151 49 chr4 17737411 17737566 -184590781 + MLT1J2 LTR MaLR 31 169 -277 2563 65 0 0 chr4 17737566 17737873 -184590474 - AluY SINE Alu -3 308 2 435 256 151 49 chr4 17737873 17738022 -184590325 + MLT1J2 LTR MaLR 169 366 -80 2282 96 3 3 chr4 17738557 17738858 -184589489 + AluSq SINE Alu 1 301 -12 1852 139 0 26 chr4 17738876 17739185 -184589162 + AluSx SINE Alu 1 301 -11 437 272 146 28 chr4 17739707 17739961 -184588386 + L2 LINE L2 2857 3140 -173 302 313 68 45 chr4 17740362 17740538 -184587809 - MIR3 SINE MIR -9 199 20 972 255 69 32 chr4 17740751 17741185 -184587162 + MLT1G1 LTR MaLR 1 512 -83 215 141 51 154 chr4 17741589 17741667 -184586680 - L2 LINE L2 -697 2617 2548 265 222 19 0 chr4 17741839 17741893 -184586454 - MER117 DNA MER1_type -142 55 1 519 228 0 0 chr4 17742713 17742893 -184585454 + (ATG)n Simple_repeat Simple_repeat 1 180 0 203 100 0 25 chr4 17742909 17742949 -184585398 + (ATG)n Simple_repeat Simple_repeat 3 41 0 584 228 24 130 chr4 17742952 17743198 -184585149 - MIR SINE MIR -22 240 21 281 341 104 39 chr4 17743403 17743585 -184584762 - MIR SINE MIR -63 199 6 443 290 15 8 chr4 17744215 17744346 -184584001 - MIR3 SINE MIR -7 201 70 2196 89 3 3 chr4 17744542 17744848 -184583499 - AluSq SINE Alu 0 306 1 3552 193 51 24 chr4 17745002 17745532 -184582815 - MER63C DNA MER1_type -243 817 258 2348 88 0 7 chr4 17745532 17745837 -184582510 - AluSx SINE Alu -9 303 1 3552 193 51 24 chr4 17745837 17746090 -184582257 - MER63C DNA MER1_type -802 258 13 219 42 0 83 chr4 17746210 17746258 -184582089 + (TTTTTA)n Simple_repeat Simple_repeat 2 45 0 287 245 0 0 chr4 17746267 17746347 -184582000 + MER63 DNA MER1_type 459 537 -523 287 282 49 55 chr4 17746347 17746510 -184581837 + L2 LINE L2 3131 3292 -21 467 305 63 93 chr4 17747016 17747318 -184581029 + L3 LINE CR1 1174 1466 -111 22 35 0 0 chr4 17747548 17747577 -184580770 + AT_rich Low_complexity Low_complexity 1 29 0 906 201 65 11 chr4 17747816 17748049 -184580298 - L1MB7 LINE L1 -265 5916 5665 34 24 0 0 chr4 17748155 17748196 -184580151 + AT_rich Low_complexity Low_complexity 1 41 0 235 165 72 72 chr4 17748259 17748356 -184579991 + HsTC2 DNA Tc2 7 103 -1795 1558 223 72 24 chr4 17748385 17748883 -184579464 + HsTC2 DNA Tc2 1274 1795 -103 22 56 0 0 chr4 17749232 17749268 -184579079 + AT_rich Low_complexity Low_complexity 1 36 0 225 270 40 0 chr4 17749280 17749354 -184578993 + MER5A DNA MER1_type 54 130 -59 21 36 0 0 chr4 17749409 17749437 -184578910 + AT_rich Low_complexity Low_complexity 1 28 0 918 198 0 6 chr4 17750822 17750989 -184577358 - FRAM SINE Alu -12 164 1 258 293 73 0 chr4 17751307 17751389 -184576958 - MIR SINE MIR -112 150 63 229 204 0 0 chr4 17751649 17751693 -184576654 - L2 LINE L2 -8 3305 3262 381 293 89 71 chr4 17752297 17752794 -184575553 + L2 LINE L2 2548 3058 -255 184 413 22 11 chr4 17752952 17753044 -184575303 + L2 LINE L2 3142 3234 -38 2344 196 69 42 chr4 17753210 17753716 -184574631 + MLT2B1 LTR ERVL 1 520 0 415 288 131 6 chr4 17754194 17754354 -184573993 + MER91A DNA MER1_type 4 183 -13 1981 74 4 0 chr4 17754595 17754838 -184573509 + AluY SINE Alu 57 300 -11 243 150 0 0 chr4 17755051 17755091 -184573256 + MIR SINE MIR 105 144 -118 460 330 58 9 chr4 17755104 17755349 -184572998 + MIR SINE MIR 3 252 -10 200 283 0 0 chr4 17755937 17755983 -184572364 + (TG)n Simple_repeat Simple_repeat 2 47 0 269 360 0 0 chr4 17756042 17756128 -184572219 + L2 LINE L2 3102 3187 -85 189 74 0 0 chr4 17758050 17758077 -184570270 + (CAAAA)n Simple_repeat Simple_repeat 1 27 0 666 253 13 7 chr4 17758109 17758263 -184570084 - MIR SINE MIR -8 254 100 198 293 24 49 chr4 17758458 17758540 -184569807 + L2 LINE L2 2935 3014 -258 466 301 96 13 chr4 17758669 17758898 -184569449 - MIR SINE MIR -9 253 6 1222 173 26 68 chr4 17758999 17759265 -184569082 + AluJb SINE Alu 47 301 -11 1474 173 33 43 chr4 17759862 17760162 -184568185 + AluJb SINE Alu 13 309 -3 256 206 109 11 chr4 17760248 17760340 -184568007 + L1ME LINE L1 5797 5897 -224 2621 52 0 3 chr4 17760667 17760975 -184567372 + AluY SINE Alu 1 307 -4 201 121 0 0 chr4 17761135 17761168 -184567179 + (A)n Simple_repeat Simple_repeat 1 33 0 304 265 71 10 chr4 17761205 17761303 -184567044 + MIR3 SINE MIR 97 200 -8 22 0 0 0 chr4 17761678 17761700 -184566647 + AT_rich Low_complexity Low_complexity 1 22 0 318 322 29 1 chr4 17762734 17762837 -184565510 - MIR SINE MIR -76 132 31 180 0 0 0 chr4 17762977 17762997 -184565350 + (TC)n Simple_repeat Simple_repeat 1 20 0 * 273 98 0 0 chr4 17762996 17763037 -184565310 + (CA)n Simple_repeat Simple_repeat 1 41 0 433 278 150 38 chr4 17763560 17763826 -184564521 - L2 LINE L2 -1 3312 3017 497 353 107 0 chr4 17764002 17764328 -184564019 - L2 LINE L2 -368 2946 2586 27 29 0 0 chr4 17765109 17765143 -184563204 + AT_rich Low_complexity Low_complexity 1 34 0 2347 105 0 0 chr4 17765216 17765521 -184562826 - AluSg SINE Alu -2 308 4 371 312 5 48 chr4 17765843 17766029 -184562318 + MIR SINE MIR 75 252 -10 198 383 70 31 chr4 17766104 17766232 -184562115 + L2 LINE L2 3097 3229 -43 21 0 0 0 chr4 17766316 17766337 -184562010 + AT_rich Low_complexity Low_complexity 1 21 0 197 241 17 69 chr4 17768714 17768772 -184559575 - L2 LINE L2 -10 3303 3249 186 43 0 0 chr4 17769038 17769061 -184559286 + (A)n Simple_repeat Simple_repeat 1 23 0 211 196 0 22 chr4 17769523 17769569 -184558778 + GA-rich Low_complexity Low_complexity 2 46 0 324 70 0 0 chr4 17771816 17771859 -184556488 + (TA)n Simple_repeat Simple_repeat 2 44 0 180 0 0 0 chr4 17772467 17772487 -184555860 + (CAGG)n Simple_repeat Simple_repeat 2 21 0 813 144 6 17 chr4 17772551 17772732 -184555615 + GA-rich Low_complexity Low_complexity 2 180 0 243 0 0 0 chr4 17772732 17772759 -184555588 + (GA)n Simple_repeat Simple_repeat 1 27 0 207 0 0 0 chr4 17773357 17773380 -184554967 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 189 74 0 0 chr4 17774882 17774909 -184553438 + (CA)n Simple_repeat Simple_repeat 1 27 0 180 200 0 0 chr4 17774911 17774951 -184553396 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 574 293 81 22 chr4 17775126 17775348 -184552999 + MIR SINE MIR 10 244 -18 2379 88 13 0 chr4 17775362 17775668 -184552679 + AluSg SINE Alu 1 310 0 1073 142 0 0 chr4 17775669 17775850 -184552497 + AluSg/x SINE Alu 127 307 0 2248 100 0 3 chr4 17776030 17776320 -184552027 + AluSg SINE Alu 7 295 -15 661 299 47 8 chr4 17776413 17776647 -184551700 - MIR SINE MIR -12 250 8 357 226 26 35 chr4 17777395 17777510 -184550837 + Charlie8 DNA MER1_type 76 189 -2228 2316 97 13 3 chr4 17777756 17778064 -184550283 - AluSq SINE Alu -2 311 1 569 276 68 22 chr4 17778183 17778396 -184549951 + MIR SINE MIR 42 260 -2 355 230 0 14 chr4 17778530 17778604 -184549743 - L2 LINE L2 -1 3312 3240 800 244 77 24 chr4 17778661 17778907 -184549440 + MIR SINE MIR 4 262 0 330 362 29 7 chr4 17779102 17779240 -184549107 - L2 LINE L2 -191 3081 2941 2359 106 0 0 chr4 17779814 17780126 -184548221 - AluSx SINE Alu 0 312 1 474 285 121 91 chr4 17780338 17780811 -184547536 + L2 LINE L2 2827 3313 0 304 314 36 20 chr4 17781109 17781276 -184547071 + MIR SINE MIR 20 187 -65 747 295 44 1 chr4 17781293 17781525 -184546822 - MIR SINE MIR -2 260 22 914 299 129 27 chr4 17781637 17782079 -184546268 - MLT1K LTR MaLR -1 587 101 1999 201 57 5 chr4 17782136 17782558 -184545789 + MLT1C LTR MaLR 22 465 -2 267 31 0 0 chr4 17782903 17782935 -184545412 + (TC)n Simple_repeat Simple_repeat 1 32 0 450 309 90 17 chr4 17783728 17784029 -184544318 - L1ME4a LINE L1 -268 5853 5531 2002 100 76 3 chr4 17784380 17784669 -184543678 - AluSx SINE Alu -2 310 1 716 142 8 37 chr4 17785019 17785153 -184543194 + MLT2B1 LTR ERVL 2 131 -389 4829 201 26 21 chr4 17785161 17785644 -184542703 + ERVL-B1 LTR ERVL 779 1258 -4506 2359 63 0 7 chr4 17785644 17785973 -184542374 + AluY SINE Alu 1 327 0 4829 201 26 21 chr4 17785973 17786492 -184541855 + ERVL-B1 LTR ERVL 1258 1787 -3977 16814 167 21 6 chr4 17786496 17789305 -184539042 + ERVL-B1 LTR ERVL 2907 5757 -7 1055 176 26 0 chr4 17789305 17789498 -184538849 + MLT2B1 LTR ERVL 1 198 -322 682 128 0 28 chr4 17789512 17789621 -184538726 + L1MD3 LINE L1 7862 7967 -28 445 310 125 27 chr4 17790828 17791162 -184537185 + L2 LINE L2 2726 3084 -229 1457 122 14 0 chr4 17791200 17791413 -184536934 + AluSp SINE Alu 93 308 -5 2300 52 39 30 chr4 17791440 17791745 -184536602 - AluY SINE Alu -3 308 1 470 297 134 10 chr4 17791984 17792274 -184536073 + L1MC/D LINE L1 5285 5610 -2198 239 316 9 18 chr4 17792299 17792413 -184535934 - L1ME4a LINE L1 -690 5431 5319 2318 83 144 35 chr4 17792583 17792980 -184535367 + LTR7 LTR ERV1 1 440 -10 240 196 20 0 chr4 17793088 17793139 -184535208 - L2 LINE L2 -1 3312 3261 2044 97 7 39 chr4 17793201 17793511 -184534836 - AluSg SINE Alu -8 302 3 225 0 0 0 chr4 17793739 17793764 -184534583 + (TG)n Simple_repeat Simple_repeat 2 26 0 228 232 0 0 chr4 17793776 17793832 -184534515 - L1MC4 LINE L1 -1339 6703 6648 396 252 32 96 chr4 17794000 17794250 -184534097 + MIR SINE MIR 9 242 -20 2320 96 7 0 chr4 17794589 17794892 -184533455 - AluY SINE Alu -5 306 2 311 287 75 23 chr4 17795026 17795200 -184533147 + L1MC4a LINE L1 3600 3782 -2364 2520 70 0 10 chr4 17795245 17795558 -184532789 + AluY SINE Alu 1 310 -1 304 281 10 10 chr4 17795602 17795698 -184532649 + L1MC4a LINE L1 3813 3908 -2238 472 268 43 112 chr4 17795706 17795982 -184532365 + L1MC4a LINE L1 5400 5656 -2152 234 91 0 0 chr4 17795997 17796030 -184532317 + (GGGA)n Simple_repeat Simple_repeat 4 36 0 357 82 0 0 chr4 17796072 17796121 -184532226 + (GGGA)n Simple_repeat Simple_repeat 4 52 0 822 279 48 24 chr4 17796133 17796470 -184531877 + L1MC4a LINE L1 5688 6032 -1776 325 328 70 67 chr4 17796495 17796836 -184531511 + L1MC4a LINE L1 6123 6464 -1344 1031 212 66 78 chr4 17796877 17797378 -184530969 + L1MC5 LINE L1 7437 7931 -30 190 283 19 0 chr4 17797623 17797676 -184530671 + MIR SINE MIR 20 73 -189 1769 204 68 52 chr4 17797920 17798435 -184529912 + MER39 LTR ERV1 1 703 -4 473 148 89 10 chr4 17798754 17798855 -184529492 + MER34B LTR ERV1 457 565 0 268 258 152 67 chr4 17799289 17799467 -184528880 - L2 LINE L2 -4 3309 3117 230 308 111 17 chr4 17800389 17800506 -184527841 - MER5B DNA MER1_type 0 178 51 718 154 24 12 chr4 17800629 17800798 -184527549 + CT-rich Low_complexity Low_complexity 4 174 0 463 137 0 0 chr4 17800798 17800871 -184527476 - MER41B LTR ERV1 -83 552 480 341 264 189 67 chr4 17801802 17801882 -184526465 + L1MC5 LINE L1 7258 7327 -634 1709 90 5 0 chr4 17801882 17802104 -184526243 + L1PA13 LINE L1 5935 6157 -6 341 264 189 67 chr4 17802104 17802425 -184525922 + L1MC5 LINE L1 7327 7708 -253 773 236 14 0 chr4 17802480 17802628 -184525719 + FRAM SINE Alu 1 150 -26 391 137 11 126 chr4 17802722 17802817 -184525530 + MER21B LTR ERV1 13 96 -767 911 229 21 30 chr4 17802859 17803095 -184525252 + MER21B LTR ERV1 102 335 -528 1005 240 66 60 chr4 17803124 17803490 -184524857 + MER21B LTR ERV1 408 775 -88 303 208 83 31 chr4 17803516 17803612 -184524735 + L1MC5 LINE L1 7832 7932 -29 612 247 7 7 chr4 17803665 17803815 -184524532 - L1ME LINE L1 -687 5475 5326 * 2153 224 21 25 chr4 17803798 17804324 -184524023 + L1ME2 LINE L1 5634 6157 -7 247 261 148 35 chr4 17804956 17805071 -184523276 - MIR SINE MIR -75 187 60 655 244 96 48 chr4 17805193 17805464 -184522883 + LTR16C LTR ERVL 176 459 -32 281 243 14 14 chr4 17805554 17805628 -184522719 + MER116 DNA Mariner 3 76 -4 369 321 57 25 chr4 17806104 17806263 -184522084 + L2 LINE L2 3108 3271 -1 567 273 19 7 chr4 17806467 17806621 -184521726 + MIR SINE MIR 29 184 -78 196 333 42 52 chr4 17806780 17806876 -184521471 - L2 LINE L2 -40 3232 3138 2406 91 0 0 chr4 17806934 17807243 -184521104 + AluY SINE Alu 1 309 -2 196 350 31 10 chr4 17807324 17807421 -184520926 - L2 LINE L2 -582 2732 2634 1276 193 159 52 chr4 17807482 17807902 -184520445 - MLT1C LTR MaLR 0 467 3 2276 101 7 7 chr4 17808358 17808666 -184519681 + AluSc SINE Alu 1 308 -1 1436 111 106 0 chr4 17808708 17808916 -184519431 - MER30 DNA MER1_type 0 230 1 276 231 38 42 chr4 17808981 17809112 -184519235 - MIR SINE MIR -58 204 24 477 253 13 53 chr4 17809715 17809865 -184518482 + MER103 DNA DNA 22 165 -1 241 288 34 0 chr4 17810086 17810145 -184518202 - L2 LINE L2 -4 3309 3249 203 313 53 61 chr4 17810308 17810439 -184517908 - MIR3 SINE MIR -31 177 48 704 168 0 9 chr4 17810457 17810570 -184517777 + FLAM_A SINE Alu 8 119 -23 1973 144 0 0 chr4 17810590 17810903 -184517444 - AluSx SINE Alu 0 313 1 270 381 24 0 chr4 17811104 17811230 -184517117 + MIR SINE MIR 34 162 -100 1729 130 10 31 chr4 17811549 17811842 -184516505 + AluJb SINE Alu 23 309 -3 295 208 83 0 chr4 17813183 17813255 -184515092 + L1ME4a LINE L1 5715 5792 -329 365 286 71 52 chr4 17813690 17813998 -184514349 + L1ME4a LINE L1 5789 6102 -19 253 330 55 0 chr4 17814514 17814605 -184513742 - MIR3 SINE MIR -46 162 67 225 322 25 58 chr4 17814626 17814747 -184513600 - L2 LINE L2 -5 3267 3151 196 256 0 0 chr4 17814914 17814957 -184513390 + L2 LINE L2 3267 3309 -4 27 62 0 0 chr4 17814963 17815011 -184513336 + AT_rich Low_complexity Low_complexity 1 48 0 27 87 0 0 chr4 17815053 17815122 -184513225 + AT_rich Low_complexity Low_complexity 1 69 0 523 315 79 47 chr4 17815265 17815519 -184512828 - MIR SINE MIR 0 262 1 404 134 104 0 chr4 17816393 17816460 -184511887 - MLT1C LTR MaLR 0 467 394 43834 30 21 1 chr4 17816607 17822633 -184505714 + L1HS LINE L1 3 6152 -3 2548 153 22 0 chr4 17822633 17823039 -184505308 - MLT1C LTR MaLR -52 415 1 2433 83 0 0 chr4 17823070 17823371 -184504976 - AluY SINE Alu -9 302 2 495 171 0 0 chr4 17823399 17823469 -184504878 + AluS SINE Alu 2 71 -239 1837 119 0 0 chr4 17823469 17823739 -184504608 + AluSx SINE Alu 42 311 0 2195 90 14 0 chr4 17823758 17824047 -184504300 - L1PA10 LINE L1 -248 5920 5628 2605 153 10 56 chr4 17824517 17825020 -184503327 + MLT1D LTR MaLR 26 505 0 187 138 0 22 chr4 17825900 17825936 -184502411 - L2 LINE L2 -13 3300 3225 204 40 0 0 chr4 17827021 17827046 -184501301 + (A)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr4 17827361 17827382 -184500965 + AT_rich Low_complexity Low_complexity 1 21 0 2190 157 58 62 chr4 17827949 17828383 -184499964 - MSTB1 LTR MaLR 0 432 1 1251 154 12 77 chr4 17828390 17828649 -184499698 - MSTB-int LTR MaLR -7 1644 1403 * 3213 219 17 3 chr4 17828646 17829307 -184499040 - MSTB-int LTR MaLR -981 670 1 523 172 21 0 chr4 17829311 17829404 -184498943 - MSTB1 LTR MaLR -335 97 3 2487 188 29 0 chr4 17829560 17829974 -184498373 - MSTB LTR MaLR 0 426 1 226 288 0 0 chr4 17830090 17830149 -184498198 + MIR SINE MIR 20 78 -130 488 284 22 0 chr4 17830183 17830317 -184498030 - MIR SINE MIR -35 227 91 214 282 70 14 chr4 17830387 17830458 -184497889 + MIR3 SINE MIR 120 194 -14 370 209 9 9 chr4 17830848 17830963 -184497384 + (TA)n Simple_repeat Simple_repeat 2 116 0 258 32 0 0 chr4 17831303 17831334 -184497013 + (T)n Simple_repeat Simple_repeat 1 31 0 364 245 49 10 chr4 17831398 17831500 -184496847 + MER46C DNA MER2_type 1 106 -232 269 333 31 0 chr4 17831570 17831666 -184496681 + MER46C DNA MER2_type 240 338 0 21 36 0 0 chr4 17831858 17831886 -184496461 + AT_rich Low_complexity Low_complexity 1 28 0 417 324 72 5 chr4 17832872 17833094 -184495253 + MIR SINE MIR 13 249 -13 304 173 0 0 chr4 17833470 17833522 -184494825 - L2 LINE L2 0 3313 3262 332 43 0 21 chr4 17833546 17833593 -184494754 + (CA)n Simple_repeat Simple_repeat 1 46 0 186 229 0 42 chr4 17833835 17833883 -184494464 + L2 LINE L2 3226 3271 -42 10997 128 12 3 chr4 17833892 17835496 -184492851 + Tigger1 DNA MER2_type 1 1619 -799 1911 142 153 26 chr4 17835496 17835701 -184492646 - MSTA LTR MaLR 0 428 250 3464 151 21 96 chr4 17835701 17835962 -184492385 - LTR8 LTR ERV1 0 691 412 2269 121 0 3 chr4 17835962 17836267 -184492080 - AluSx SINE Alu -8 304 1 3464 151 21 96 chr4 17836267 17836752 -184491595 - LTR8 LTR ERV1 -279 412 1 1911 142 153 26 chr4 17836752 17836926 -184491421 - MSTA LTR MaLR -178 250 1 * 4849 134 45 5 chr4 17836926 17837694 -184490653 + Tigger1 DNA MER2_type 1618 2416 -2 1777 155 22 40 chr4 17837704 17838026 -184490321 + MLT1B LTR MaLR 1 316 -74 189 318 23 34 chr4 17838491 17838579 -184489768 - L2 LINE L2 -185 3087 3001 189 313 76 30 chr4 17838953 17839084 -184489263 + L2 LINE L2 2146 2282 -1032 905 245 5 0 chr4 17839275 17839467 -184488880 + MER58A DNA MER1_type 1 193 -31 376 191 11 53 chr4 17839644 17839738 -184488609 - L2 LINE L2 -2 3311 3222 361 282 208 4 chr4 17839746 17839987 -184488360 + L2 LINE L2 2907 3196 -117 217 289 127 84 chr4 17840217 17840383 -184487964 + MIR3 SINE MIR 13 185 -23 442 270 101 28 chr4 17840498 17840676 -184487671 + MIR SINE MIR 66 256 -6 2464 70 0 3 chr4 17840718 17841019 -184487328 + AluY SINE Alu 1 300 -11 369 263 105 7 chr4 17841912 17842064 -184486283 - MIR3 SINE MIR -22 186 20 303 232 0 37 chr4 17842461 17842543 -184485804 + MER96 DNA MER1_type? 91 169 -6 221 336 56 16 chr4 17842573 17842698 -184485649 + L2 LINE L2 2684 2813 -501 221 231 115 0 chr4 17842821 17842873 -184485474 + MIR SINE MIR 97 154 -108 243 293 60 43 chr4 17843219 17843335 -184485012 + L2 LINE L2 3154 3271 -1 193 317 77 29 chr4 17843443 17843547 -184484800 + MIR SINE MIR 26 134 -128 1407 215 76 69 chr4 17843578 17844039 -184484308 + L1ME2 LINE L1 5659 6122 -42 421 193 105 0 chr4 17844052 17844166 -184484181 - L1MA4 LINE L1 0 6300 6175 2519 88 0 0 chr4 17844174 17844482 -184483865 + AluSx SINE Alu 1 308 -4 1900 150 33 0 chr4 17844486 17844786 -184483561 - MER21A LTR ERV1 -1 930 621 21 0 0 0 chr4 17844845 17844866 -184483481 + AT_rich Low_complexity Low_complexity 1 21 0 211 286 0 36 chr4 17846346 17846402 -184481945 - L2 LINE L2 -6 3266 3213 277 297 69 63 chr4 17847879 17848054 -184480293 + MIR SINE MIR 47 222 -40 198 305 63 68 chr4 17848176 17848345 -184480002 + L2 LINE L2 3125 3294 -19 3458 43 2 80 chr4 17848345 17848831 -184479516 + LTR7 LTR ERV1 1 448 -2 198 305 63 68 chr4 17848831 17848851 -184479496 + L2 LINE L2 3294 3313 0 426 214 95 8 chr4 17849520 17849646 -184478701 - L1ME2 LINE L1 -21 6143 6007 279 308 77 21 chr4 17849828 17849971 -184478376 - L2 LINE L2 0 3313 3163 1608 124 0 4 chr4 17850240 17850465 -184477882 + AluSc SINE Alu 1 224 -85 8200 228 60 35 chr4 17850545 17851405 -184476942 + L1MD1 LINE L1 2512 3349 -2893 1248 216 122 61 chr4 17851405 17851831 -184476516 + MSTB2 LTR MaLR 4 455 -2 8200 228 60 35 chr4 17851831 17852263 -184476084 + L1MD1 LINE L1 3349 3769 -2473 2327 85 0 13 chr4 17852263 17852569 -184475778 + AluY SINE Alu 1 302 -9 8200 228 60 35 chr4 17852569 17853367 -184474980 + L1MD1 LINE L1 3769 4546 -1696 2144 64 10 54 chr4 17853367 17853683 -184474664 + AluY SINE Alu 1 303 0 8200 228 60 35 chr4 17853683 17854928 -184473419 + L1MD1 LINE L1 4546 5920 -322 918 198 0 6 chr4 17855940 17856107 -184472240 - FRAM SINE Alu -12 164 1 258 293 73 0 chr4 17856425 17856507 -184471840 - MIR SINE MIR -112 150 63 229 204 0 0 chr4 17856767 17856811 -184471536 - L2 LINE L2 -8 3305 3262 381 293 89 71 chr4 17857415 17857912 -184470435 + L2 LINE L2 2548 3058 -255 184 413 22 11 chr4 17858070 17858162 -184470185 + L2 LINE L2 3142 3234 -38 2344 196 69 42 chr4 17858328 17858834 -184469513 + MLT2B1 LTR ERVL 1 520 0 415 288 131 6 chr4 17859312 17859472 -184468875 + MER91A DNA MER1_type 4 183 -13 2033 58 0 16 chr4 17859713 17859971 -184468376 + AluY SINE Alu 57 310 -1 228 211 211 0 chr4 17860473 17860549 -184467798 + MIR SINE MIR 77 168 -94 482 291 0 0 chr4 17860630 17860757 -184467590 - MIR SINE MIR -56 206 80 2325 110 0 0 chr4 17860757 17861056 -184467291 - AluSg SINE Alu -11 299 1 2661 198 20 46 chr4 17861317 17861509 -184466838 - L1MC3 LINE L1 0 7785 7589 1234 197 53 4 chr4 17861509 17861737 -184466610 - MER8 DNA MER2_type 0 239 1 2661 198 20 46 chr4 17861737 17862149 -184466198 - L1MC3 LINE L1 -196 7589 7197 281 161 125 40 chr4 17862158 17862255 -184466092 - MLT1F1 LTR MaLR -383 166 35 788 183 37 12 chr4 17862255 17862419 -184465928 - L1MC3 LINE L1 -700 7085 6918 439 199 21 9 chr4 17862417 17862503 -184465844 - L1MC3 LINE L1 -1082 6703 6631 * 1605 164 29 4 chr4 17862503 17862798 -184465549 - AluJb SINE Alu 0 302 1 439 199 21 9 chr4 17862798 17862812 -184465535 - L1MC3 LINE L1 -1154 6631 6619 255 320 53 53 chr4 17863187 17863337 -184465010 + L2 LINE L2 2629 2778 -536 387 244 134 8 chr4 17863338 17863457 -184464890 - MER96 DNA MER1_type? 0 175 42 289 265 165 45 chr4 17863457 17863718 -184464629 + L2 LINE L2 2776 3063 -209 233 292 15 0 chr4 17863931 17863996 -184464351 - L2 LINE L2 -203 3069 3004 236 219 110 27 chr4 17864032 17864105 -184464242 - MER116 DNA Mariner -1 79 1 620 250 41 51 chr4 17864132 17864328 -184464019 - MIR SINE MIR -44 218 25 227 192 53 72 chr4 17864916 17865009 -184463338 + MIR SINE MIR 117 201 -7 285 192 0 0 chr4 17865856 17865908 -184462439 - MIR SINE MIR -161 101 50 340 211 105 0 chr4 17866440 17866516 -184461831 + MIR SINE MIR 154 237 -25 2243 106 0 0 chr4 17867232 17867534 -184460813 - AluSg SINE Alu -8 302 1 210 37 0 0 chr4 17867534 17867561 -184460786 + (TTG)n Simple_repeat Simple_repeat 2 28 0 2265 82 0 20 chr4 17869283 17869588 -184458759 - AluSx SINE Alu -13 299 1 994 167 5 21 chr4 17870192 17870384 -184457963 - MER53 DNA DNA 0 189 1 928 221 142 12 chr4 17870643 17870974 -184457373 + LTR37A LTR ERV1 53 426 0 2500 55 0 3 chr4 17871100 17871410 -184456937 - AluY SINE Alu -2 309 1 299 288 27 55 chr4 17871712 17871858 -184456489 + L2 LINE L2 3172 3313 0 182 263 0 0 chr4 17872145 17872183 -184456164 - L2 LINE L2 -31 3241 3204 203 152 0 0 chr4 17872185 17872218 -184456129 + GA-rich Low_complexity Low_complexity 2 34 0 314 135 19 0 chr4 17872398 17872450 -184455897 - Charlie1b DNA MER1_type -2 521 469 2846 227 61 79 chr4 17872450 17872879 -184455468 + L1MD2 LINE L1 5051 5486 -2556 1644 186 3 17 chr4 17872879 17873170 -184455177 + AluJb SINE Alu 1 287 -25 2454 58 0 0 chr4 17873174 17873466 -184454881 + AluY SINE Alu 1 292 -19 2786 10 0 13 chr4 17873468 17873836 -184454511 + AluYb8 SINE Alu 1 318 0 2846 227 61 79 chr4 17873836 17874511 -184453836 + L1MD2 LINE L1 5490 6176 -1866 261 0 0 0 chr4 17874511 17874540 -184453807 + (CA)n Simple_repeat Simple_repeat 1 29 0 2846 227 61 79 chr4 17874540 17874718 -184453629 + L1MD2 LINE L1 6176 8021 -21 2225 203 23 11 chr4 17874723 17875197 -184453150 - Charlie1b DNA MER1_type -43 480 1 329 278 56 28 chr4 17875242 17875350 -184452997 + L2 LINE L2 3139 3249 -23 597 256 138 50 chr4 17876377 17876697 -184451650 + MER7A DNA MER2_type 1 346 0 226 0 59 0 chr4 17878118 17878152 -184450195 + (TTTTG)n Simple_repeat Simple_repeat 1 36 0 2184 65 7 11 chr4 17878152 17878431 -184449916 - AluY SINE Alu -33 278 1 200 264 42 28 chr4 17879153 17879225 -184449122 + MER5A DNA MER1_type 82 154 -35 2276 137 31 11 chr4 17879398 17879755 -184448592 + THE1B LTR MaLR 1 364 0 232 302 70 0 chr4 17880044 17880130 -184448217 + MIR SINE MIR 53 144 -118 207 0 0 0 chr4 17880387 17880410 -184447937 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 1286 219 120 23 chr4 17881125 17881509 -184446838 - MLT1C LTR MaLR -41 426 6 811 277 74 53 chr4 17882388 17882821 -184445526 + L2 LINE L2 2871 3312 -1 534 250 109 38 chr4 17883587 17883907 -184444440 + L1ME4a LINE L1 5725 6067 -54 662 336 82 11 chr4 17884036 17884560 -184443787 - L1ME4a LINE L1 -114 6007 5447 498 214 11 0 chr4 17885051 17885140 -184443207 + MER21B LTR ERV1 1 90 -773 478 156 131 31 chr4 17885147 17885327 -184443020 + L1PA16 LINE L1 5949 6166 0 4029 184 48 19 chr4 17885337 17886092 -184442255 + MER21B LTR ERV1 87 863 0 2261 107 0 3 chr4 17886140 17886438 -184441909 + AluSx SINE Alu 1 297 -15 227 185 93 0 chr4 17886618 17886672 -184441675 + MIR SINE MIR 86 144 -118 2439 97 0 0 chr4 17886913 17887222 -184441125 + AluSx SINE Alu 1 309 -3 331 294 153 44 chr4 17887433 17887773 -184440574 - L1MCc LINE L1 -6028 395 19 332 273 109 16 chr4 17887793 17887921 -184440426 - MIR SINE MIR -74 188 49 2170 106 7 0 chr4 17887951 17888256 -184440091 - AluSx SINE Alu 0 307 1 3015 90 44 23 chr4 17889370 17889416 -184438931 - MLT2A1 LTR ERVL 0 444 400 524 91 11 0 chr4 17889416 17889504 -184438843 + (TCTA)n Simple_repeat Simple_repeat 4 92 0 3015 90 44 23 chr4 17889504 17889892 -184438455 - MLT2A1 LTR ERVL -44 400 1 264 326 23 23 chr4 17889987 17890116 -184438231 - L3 LINE CR1 -13 1564 1436 411 183 0 0 chr4 17890301 17890372 -184437975 + MER5A DNA MER1_type 31 101 -88 194 282 59 12 chr4 17890438 17890523 -184437824 + MIR3 SINE MIR 99 187 -21 1810 143 58 3 chr4 17890697 17890991 -184437356 + AluJo SINE Alu 1 310 -2 247 270 28 7 chr4 17891468 17891550 -184436797 + GA-rich Low_complexity Low_complexity 3 144 0 3252 239 64 24 chr4 17891907 17892962 -184435385 + L1ME1 LINE L1 2449 3553 -2593 2264 101 3 0 chr4 17892962 17893258 -184435089 - AluSp SINE Alu -16 297 1 3252 239 64 24 chr4 17893258 17893320 -184435027 + L1ME1 LINE L1 3553 3611 -2535 556 213 137 11 chr4 17893315 17893498 -184434849 + L1ME1 LINE L1 4213 4418 -1728 * 792 206 33 5 chr4 17893503 17893687 -184434660 + MER96B DNA MER1_type? 6 194 -223 3214 231 57 19 chr4 17893739 17894902 -184433445 + L1ME1 LINE L1 4439 5645 -521 322 204 130 74 chr4 17894930 17895038 -184433309 - MER58B DNA MER1_type -36 305 192 1549 240 44 38 chr4 17895079 17895575 -184432772 + L1ME1 LINE L1 5663 6161 -5 327 308 129 8 chr4 17895806 17895977 -184432370 + MIR SINE MIR 3 192 -56 2165 195 38 5 chr4 17896045 17896445 -184431902 - MLT2D LTR ERVL 0 414 2 36 0 0 0 chr4 17896546 17896582 -184431765 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr4 17897045 17897067 -184431280 + AT_rich Low_complexity Low_complexity 1 22 0 2602 49 0 0 chr4 17897863 17898169 -184430178 - AluY SINE Alu -5 306 1 217 108 27 0 chr4 17898500 17898537 -184429810 + MIR SINE MIR 108 145 -117 709 239 28 17 chr4 17898560 17898736 -184429611 + MER63A DNA MER1_type 28 205 -5 24 32 0 0 chr4 17899411 17899442 -184428905 + AT_rich Low_complexity Low_complexity 1 31 0 1823 123 0 4 chr4 17899668 17899929 -184428418 + AluSq SINE Alu 1 260 -53 180 26 53 26 chr4 17899929 17899967 -184428380 + (CAA)n Simple_repeat Simple_repeat 1 39 0 2040 152 83 11 chr4 17900177 17900551 -184427796 - L1MA9 LINE L1 -5 6307 5907 2386 93 3 0 chr4 17900995 17901296 -184427051 + AluSc SINE Alu 1 302 -7 321 326 60 30 chr4 17901392 17901625 -184426722 - MLT1K LTR MaLR -32 556 317 246 333 39 45 chr4 17901741 17901897 -184426450 - MLT1K LTR MaLR -342 246 92 470 244 43 49 chr4 17902030 17902194 -184426153 - L1MC/D LINE L1 -2018 5790 5628 318 286 27 45 chr4 17902552 17902664 -184425683 - LTR67 LTR ERVL -363 194 85 327 49 0 0 chr4 17902770 17902811 -184425536 + (CA)n Simple_repeat Simple_repeat 2 42 0 2127 106 3 11 chr4 17903637 17903953 -184424394 - AluSg SINE Alu 0 314 1 607 288 80 9 chr4 17904310 17904522 -184423825 + MIR SINE MIR 2 228 -34 3164 146 52 2 chr4 17905081 17905615 -184422732 - MER34B LTR ERV1 0 565 5 3630 53 0 11 chr4 17905763 17906216 -184422131 - LTR7 LTR ERV1 -2 448 1 2493 84 45 13 chr4 17906216 17906596 -184421751 - HERVH LTR ERV1 0 7713 7322 1429 130 19 0 chr4 17906594 17906810 -184421537 - HERVH LTR ERV1 -1894 5819 5600 * 11426 88 27 40 chr4 17906811 17908490 -184419857 - HERVH LTR ERV1 -2564 5149 3492 960 133 7 0 chr4 17908480 17908630 -184419717 - HERVH LTR ERV1 -4423 3290 3140 * 16701 102 16 19 chr4 17908609 17911491 -184416856 - HERVH LTR ERV1 -4718 2995 1 3637 51 4 13 chr4 17911493 17911945 -184416402 - LTR7 LTR ERV1 -2 448 1 3658 90 59 0 chr4 17911945 17912456 -184415891 - MER41A LTR ERV1 -13 541 1 2073 108 42 0 chr4 17912752 17913038 -184415309 - AluSg SINE Alu -11 299 2 24 32 0 0 chr4 17913047 17913078 -184415269 + AT_rich Low_complexity Low_complexity 1 31 0 324 120 0 0 chr4 17913109 17913159 -184415188 + (TTCC)n Simple_repeat Simple_repeat 3 52 0 492 244 65 36 chr4 17913224 17913392 -184414955 - MIR SINE MIR -57 205 33 239 260 39 0 chr4 17915745 17915822 -184412525 - MIR SINE MIR 0 262 183 881 246 26 0 chr4 17916209 17916441 -184411906 + L1MD3 LINE L1 7748 7985 -10 326 276 94 8 chr4 17916686 17916813 -184411534 - MIR SINE MIR -70 192 55 186 235 0 0 chr4 17916957 17916991 -184411356 + L2 LINE L2 3208 3241 -31 233 233 0 0 chr4 17917542 17917585 -184410762 + MER39 LTR ERV1 4 46 -661 2743 116 8 3 chr4 17917615 17917977 -184410370 - THE1B LTR MaLR 0 364 1 992 234 33 71 chr4 17917978 17918345 -184410002 + MER39 LTR ERV1 257 609 -98 696 157 0 0 chr4 17918474 17918606 -184409741 - AluSg/x SINE Alu 0 312 181 372 322 26 9 chr4 17918645 17918760 -184409587 + MIR SINE MIR 19 135 -127 1622 217 41 49 chr4 17919043 17919567 -184408780 - MER39 LTR ERV1 0 707 4 501 240 184 28 chr4 17920638 17920888 -184407459 - MLT1H LTR MaLR -206 343 55 322 322 31 78 chr4 17920967 17921222 -184407125 + L2 LINE L2 2316 2558 -756 650 271 128 12 chr4 17921261 17921582 -184406765 + L2 LINE L2 2950 3307 -6 256 270 95 14 chr4 17921660 17921734 -184406613 - L2 LINE L2 -196 3076 2997 843 256 129 67 chr4 17921810 17922376 -184405971 + Charlie7 DNA MER1_type 78 678 -1934 318 210 0 0 chr4 17922453 17922515 -184405832 - L1ME3 LINE L1 -1 6230 6169 1895 211 111 33 chr4 17922516 17922596 -184405751 - L1ME3 LINE L1 -181 6050 5978 306 0 0 0 chr4 17922596 17922630 -184405717 + (TG)n Simple_repeat Simple_repeat 2 35 0 1895 211 111 33 chr4 17922630 17923249 -184405098 - L1ME3 LINE L1 -253 5978 5293 1709 180 52 0 chr4 17923253 17923558 -184404789 - MER2 DNA MER2_type -24 321 1 244 196 0 0 chr4 17923558 17923603 -184404744 + LTR66 LTR ERVL 395 439 -171 309 276 23 0 chr4 17923616 17923703 -184404644 + L1MC4 LINE L1 6615 6703 -1339 232 175 0 53 chr4 17923733 17923790 -184404557 - LTR66 LTR ERVL -171 439 386 5683 245 75 47 chr4 17923795 17924161 -184404186 - L1ME3 LINE L1 -933 5282 4928 1417 181 35 48 chr4 17924161 17924475 -184403872 + AluJb SINE Alu 3 312 0 5683 245 75 47 chr4 17924475 17926518 -184401829 - L1ME3 LINE L1 -1287 4928 2805 1985 109 0 8 chr4 17926551 17926816 -184401531 - AluSx SINE Alu -11 301 39 366 178 27 0 chr4 17926863 17926936 -184401411 - MLT1E LTR MaLR 0 593 519 1068 222 72 55 chr4 17926956 17927249 -184401098 - MLT1E1 LTR MaLR -52 602 305 263 27 0 27 chr4 17927261 17927298 -184401049 + (GA)n Simple_repeat Simple_repeat 1 36 0 202 328 0 0 chr4 17927308 17927369 -184400978 + (TA)n Simple_repeat Simple_repeat 1 61 0 524 241 9 0 chr4 17927369 17927477 -184400870 - MLT1E1 LTR MaLR -432 161 53 252 305 12 0 chr4 17927579 17927661 -184400686 - MLT1E1 LTR MaLR -571 83 1 570 224 82 66 chr4 17927683 17927987 -184400360 - L1ME3 LINE L1 -4753 1643 1335 4236 204 70 6 chr4 17927995 17929508 -184398839 - L1MD1 LINE L1 0 6242 4639 2324 61 11 0 chr4 17929560 17929860 -184398487 - AluY SINE Alu 0 303 1 1644 186 3 17 chr4 17929864 17930155 -184398192 - AluJb SINE Alu -25 287 1 998 205 82 34 chr4 17930156 17930584 -184397763 - L1MC/D LINE L1 -740 5502 5051 314 135 19 0 chr4 17930584 17930636 -184397711 + Charlie1 DNA MER1_type 2707 2759 -2 183 129 0 0 chr4 17930818 17930849 -184397498 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 182 263 0 0 chr4 17930851 17930889 -184397458 + L2 LINE L2 3204 3241 -31 555 265 135 39 chr4 17931333 17931682 -184396665 + MLT1J2 LTR MaLR 6 450 0 254 304 126 39 chr4 17932284 17932593 -184395754 + L2 LINE L2 2821 3156 -157 2298 94 0 3 chr4 17932595 17932892 -184395455 + AluSx SINE Alu 10 305 -7 290 339 101 0 chr4 17933043 17933152 -184395195 - L2 LINE L2 -16 3256 3137 230 348 59 8 chr4 17933399 17933517 -184394830 - L2 LINE L2 -236 3036 2913 28 48 0 0 chr4 17934458 17934500 -184393847 + AT_rich Low_complexity Low_complexity 1 42 0 292 250 139 0 chr4 17935200 17935308 -184393039 - LTR33 LTR ERVL -67 454 332 294 235 30 83 chr4 17935398 17935425 -184392922 - LTR33 LTR ERVL -335 188 161 1774 157 88 26 chr4 17935425 17935776 -184392571 - THE1C LTR MaLR -2 373 1 294 235 30 83 chr4 17935776 17935880 -184392467 - LTR33 LTR ERVL -362 161 64 2498 77 0 3 chr4 17936529 17936841 -184391506 - AluY SINE Alu 0 311 1 985 157 92 5 chr4 17936851 17937036 -184391311 - L1PB1 LINE L1 0 6151 5951 522 171 23 31 chr4 17938418 17938547 -184389800 - L1MC5 LINE L1 -30 7931 7804 1668 192 24 17 chr4 17938724 17939011 -184389336 + AluJb SINE Alu 1 289 -23 605 279 73 5 chr4 17939781 17939985 -184388362 - L2 LINE L2 -1 3312 3095 3492 191 33 2 chr4 17940126 17940759 -184387588 - MER82 DNA MER2_type 0 653 1 255 31 0 0 chr4 17940817 17940849 -184387498 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 2058 127 13 3 chr4 17940887 17941186 -184387161 - AluSc SINE Alu -7 302 1 561 298 69 0 chr4 17941191 17941379 -184386968 + MIR SINE MIR 48 248 -14 317 193 23 11 chr4 17941602 17941690 -184386657 + Charlie4a DNA MER1_type 70 158 -350 13676 117 40 88 chr4 17941747 17941937 -184386410 - Tigger1 DNA MER2_type -1 2417 2220 1760 194 0 0 chr4 17941937 17942231 -184386116 + AluJo SINE Alu 1 294 -18 13676 117 40 88 chr4 17942231 17942976 -184385371 - Tigger1 DNA MER2_type -198 2220 1441 2098 108 11 0 chr4 17942976 17943253 -184385094 - AluSp SINE Alu -33 280 1 13676 117 40 88 chr4 17943253 17944732 -184383615 - Tigger1 DNA MER2_type -977 1441 125 2186 132 3 0 chr4 17944732 17945042 -184383305 - AluSx SINE Alu 0 312 2 13676 117 40 88 chr4 17945042 17945162 -184383185 - Tigger1 DNA MER2_type -2293 125 1 645 223 133 9 chr4 17945165 17945376 -184382971 + Charlie4a DNA MER1_type 268 504 -4 272 287 90 30 chr4 17945999 17946166 -184382181 - L2 LINE L2 -254 3018 2842 324 315 69 65 chr4 17946284 17946764 -184381583 - L2 LINE L2 -578 2736 2255 297 135 0 0 chr4 17946819 17946871 -184381476 + (ATG)n Simple_repeat Simple_repeat 3 54 0 348 264 259 0 chr4 17946873 17947047 -184381300 - MIR SINE MIR -10 252 34 276 259 0 0 chr4 17947043 17947101 -184381246 + MIR SINE MIR 132 189 -73 * 708 239 144 18 chr4 17947109 17947331 -184381016 - MIR SINE MIR -1 261 12 221 167 24 0 chr4 17947518 17947560 -184380787 + L2 LINE L2 3271 3313 0 212 275 25 38 chr4 17947608 17947688 -184380659 + MIR SINE MIR 62 140 -68 262 258 10 52 chr4 17947712 17947809 -184380538 - MER117 DNA MER1_type -7 190 98 189 291 0 0 chr4 17947881 17947936 -184380411 + MIR3 SINE MIR 151 205 -3 355 279 27 36 chr4 17948753 17948864 -184379483 + MIR SINE MIR 37 146 -62 744 210 135 89 chr4 17949179 17949419 -184378928 - MLT1E LTR MaLR -305 288 1 265 393 53 0 chr4 17949706 17949856 -184378491 - MIR SINE MIR -70 192 35 332 288 118 20 chr4 17950469 17950622 -184377725 + MIR SINE MIR 94 261 -1 1063 166 102 39 chr4 17950884 17951089 -184377258 + MER20 DNA MER1_type 1 218 -1 355 247 93 10 chr4 17951101 17951198 -184377149 + MIR SINE MIR 42 146 -62 184 349 0 30 chr4 17951487 17951553 -184376794 + MIR3 SINE MIR 142 205 -3 285 266 173 22 chr4 17951808 17951947 -184376400 - MLT2E LTR ERVL -433 195 36 247 228 165 38 chr4 17953318 17953397 -184374950 - L2 LINE L2 0 3313 3225 247 297 14 14 chr4 17953872 17953946 -184374401 + MIR SINE MIR 48 121 -87 2382 136 19 21 chr4 17953975 17954351 -184373996 - THE1C LTR MaLR 0 375 1 195 321 146 0 chr4 17954659 17954796 -184373551 + MIR SINE MIR 93 249 -13 625 149 0 0 chr4 17954837 17954944 -184373403 + L1MA3 LINE L1 6198 6304 -1 476 205 0 0 chr4 17955875 17955958 -184372389 - MER81 DNA DNA 0 114 32 6637 91 6 24 chr4 17955983 17957183 -184371164 + L1PB1 LINE L1 4970 6151 0 379 203 0 0 chr4 17957208 17957272 -184371075 - MER81 DNA DNA -49 65 2 559 222 58 34 chr4 17957857 17958030 -184370317 - MER77 LTR ERV1 -4 601 408 692 265 66 70 chr4 17958060 17958362 -184369985 - MER77 LTR ERV1 -263 342 42 189 0 0 0 chr4 17958444 17958465 -184369882 + (TTA)n Simple_repeat Simple_repeat 2 22 0 319 243 168 19 chr4 17958477 17958584 -184369763 - MIR SINE MIR -131 131 9 1187 297 94 35 chr4 17958655 17959146 -184369201 - LTR33 LTR ERVL 0 521 2 205 343 61 10 chr4 17959588 17959687 -184368660 - L2 LINE L2 -610 2704 2601 240 283 0 0 chr4 17960248 17960301 -184368046 - L2 LINE L2 0 3272 3220 328 316 89 54 chr4 17960435 17960603 -184367744 + MER91A DNA MER1_type 1 174 -22 529 287 24 12 chr4 17961444 17961611 -184366736 + MIR SINE MIR 20 188 -74 692 122 0 9 chr4 17963161 17963276 -184365071 + (GGGGA)n Simple_repeat Simple_repeat 4 117 0 1240 228 70 98 chr4 17963502 17963959 -184364388 + MLT1H LTR MaLR 3 446 -103 2098 129 53 5 chr4 17965008 17965352 -184362995 + MLT2C1 LTR ERVL 3 424 -40 225 140 53 0 chr4 17965367 17965424 -184362923 + (TA)n Simple_repeat Simple_repeat 2 61 0 339 113 0 81 chr4 17965463 17965525 -184362822 + MLT2C1 LTR ERVL 464 520 0 599 280 207 4 chr4 17965881 17966113 -184362234 + LTR16A1 LTR ERVL 179 457 0 566 297 126 5 chr4 17966324 17966546 -184361801 - L3 LINE CR1 0 1577 1329 784 250 141 21 chr4 17967352 17967554 -184360793 + L2 LINE L2 2782 2958 -355 2028 138 67 25 chr4 17967554 17967910 -184360437 - THE1C LTR MaLR -4 371 1 784 250 141 21 chr4 17967910 17968147 -184360200 + L2 LINE L2 2958 3279 -34 1181 276 101 51 chr4 17968290 17969678 -184358669 - L1MC4a LINE L1 -747 5399 4577 450 310 89 9 chr4 17969766 17970181 -184358166 - L1MC4a LINE L1 -2167 3979 3526 1000 231 65 8 chr4 17970221 17970468 -184357879 + MER69 DNA AcHobo 7 267 -2259 284 318 138 14 chr4 17970469 17970686 -184357661 + LTR16A LTR ERVL 2 245 -205 271 305 119 0 chr4 17970728 17970846 -184357501 + LTR16A LTR ERVL 319 450 0 1864 244 117 61 chr4 17970846 17971616 -184356731 + MER69 DNA AcHobo 263 1075 -1451 1414 230 80 35 chr4 17971619 17972083 -184356264 + MER69 DNA AcHobo 1937 2432 -94 2291 92 0 23 chr4 17972083 17972387 -184355960 - AluSx SINE Alu -15 297 1 1414 230 80 35 chr4 17972387 17972487 -184355860 + MER69 DNA AcHobo 2432 2526 0 2312 108 10 0 chr4 17972801 17973106 -184355241 - AluSx SINE Alu -4 308 1 2449 228 16 53 chr4 17973106 17973202 -184355145 + L1M4 LINE L1 2234 2332 -3814 1745 168 3 3 chr4 17973202 17973493 -184354854 + AluSx SINE Alu 1 291 -21 2449 228 16 53 chr4 17973493 17974187 -184354160 + L1M4 LINE L1 2332 2995 -3151 887 169 11 22 chr4 17974706 17974884 -184353463 - THE1B LTR MaLR 0 364 189 430 157 20 0 chr4 17974928 17975030 -184353317 + (TA)n Simple_repeat Simple_repeat 2 105 0 6996 116 12 39 chr4 17975030 17976146 -184352201 + Tigger1 DNA MER2_type 393 1478 -940 2191 118 7 0 chr4 17976146 17976443 -184351904 + AluSx SINE Alu 1 299 -13 617 228 113 80 chr4 17976443 17976754 -184351593 - HAL1b LINE L1 -879 469 149 1725 278 100 2 chr4 17976757 17977627 -184350720 + L2 LINE L2 2224 3184 -129 1889 177 74 5 chr4 17977974 17978353 -184349994 + L1MA9 LINE L1 5907 6311 -1 2002 115 0 4 chr4 17978588 17978858 -184349489 - AluSx SINE Alu -43 269 1 227 185 93 0 chr4 17979099 17979153 -184349194 - MIR SINE MIR -118 144 86 384 241 8 55 chr4 17979255 17979618 -184348729 + CT-rich Low_complexity Low_complexity 1 346 0 213 241 0 35 chr4 17979620 17979678 -184348669 + C-rich Low_complexity Low_complexity 1 56 0 432 207 24 30 chr4 17979679 17979843 -184348504 + CT-rich Low_complexity Low_complexity 3 165 0 225 307 111 41 chr4 17980484 17980708 -184347639 - L2 LINE L2 -270 3002 2763 348 340 20 7 chr4 17981632 17981779 -184346568 + MLT1K LTR MaLR 22 170 -418 340 189 22 56 chr4 17982012 17982102 -184346245 + MLT1K LTR MaLR 485 571 -17 427 290 21 11 chr4 17982458 17982703 -184345644 + MER41B LTR ERV1 51 430 -205 183 217 33 50 chr4 17983105 17983165 -184345182 - L2 LINE L2 -568 2746 2688 879 130 18 6 chr4 17983470 17983639 -184344708 + GA-rich Low_complexity Low_complexity 3 173 0 227 314 123 34 chr4 17984781 17984985 -184343362 - L2 LINE L2 -405 2909 2688 207 100 0 0 chr4 17985269 17985299 -184343048 + (TCTCC)n Simple_repeat Simple_repeat 5 34 0 241 65 0 0 chr4 17985489 17985520 -184342827 + MLT1C LTR MaLR 389 419 -48 241 254 116 89 chr4 17985583 17985807 -184342540 - MER102a DNA MER1_type -9 321 92 1839 278 139 34 chr4 17985855 17986891 -184341456 - L2 LINE L2 -36 3277 2132 1415 291 41 24 chr4 17986891 17987399 -184340948 - L2 LINE L2 -2097 1217 701 364 250 34 0 chr4 17987459 17987547 -184340800 - MER5A DNA MER1_type -97 92 2 192 267 0 0 chr4 17987558 17987603 -184340744 - L2 LINE L2 -2612 702 658 434 297 10 74 chr4 17987683 17987885 -184340462 - MER5A DNA MER1_type 0 189 1 471 246 66 0 chr4 17987904 17988026 -184340321 + MIR SINE MIR 77 206 -56 205 256 39 39 chr4 17988162 17988240 -184340107 - MIR SINE MIR -12 250 173 1163 204 126 9 chr4 17988477 17989090 -184339257 + LTR50 LTR ERVL 1 771 -24 294 29 0 0 chr4 17989097 17989132 -184339215 + (TC)n Simple_repeat Simple_repeat 1 35 0 180 0 0 0 chr4 17989131 17989151 -184339196 + (CA)n Simple_repeat Simple_repeat 1 20 0 * 217 288 41 65 chr4 17989423 17989593 -184338754 + L2 LINE L2 3088 3253 -60 2083 154 55 13 chr4 17989594 17990048 -184338299 + Charlie4a DNA MER1_type 1 473 -35 1133 220 67 9 chr4 17990048 17990393 -184337954 + L1ME1 LINE L1 4955 5319 -827 1255 93 5 93 chr4 17990493 17990698 -184337649 + AluSg/x SINE Alu 105 291 -21 1305 252 27 6 chr4 17990814 17991151 -184337196 + L1ME1 LINE L1 5479 5822 -344 373 0 0 0 chr4 17991152 17991193 -184337154 + L1PA7 LINE L1 6099 6139 -15 21 0 0 0 chr4 17991811 17991832 -184336515 + AT_rich Low_complexity Low_complexity 1 21 0 1226 190 41 66 chr4 17991832 17992196 -184336151 + L1ME1 LINE L1 5810 6164 -2 2199 129 0 53 chr4 17992361 17992483 -184335864 + L1PA13 LINE L1 5750 5877 -286 2481 88 0 0 chr4 17992483 17992788 -184335559 - AluY SINE Alu -6 305 1 2199 129 0 53 chr4 17992788 17993076 -184335271 + L1PA13 LINE L1 5877 6138 -25 243 305 55 37 chr4 17993119 17993283 -184335064 - L2 LINE L2 -145 3168 3002 389 354 23 19 chr4 17993888 17994103 -184334244 + L3b LINE CR1 1236 1451 -132 187 308 0 0 chr4 17994178 17994217 -184334130 + L2 LINE L2 3245 3283 -30 740 234 196 26 chr4 17994413 17994725 -184333622 - MLT1H LTR MaLR -147 402 38 1009 152 217 68 chr4 17994732 17994949 -184333398 - MLT2B2 LTR ERVL -11 504 321 2191 112 3 7 chr4 17994949 17995244 -184333103 + AluSx SINE Alu 5 298 -14 1009 152 217 68 chr4 17995244 17995349 -184332998 - MLT2B2 LTR ERVL -194 321 134 1996 85 0 0 chr4 17995449 17995695 -184332652 + AluSc SINE Alu 40 285 -24 508 242 157 0 chr4 17995946 17996099 -184332248 + L2 LINE L2 3137 3313 0 272 260 26 0 chr4 17996701 17996778 -184331569 + MER5A DNA MER1_type 31 109 -80 226 270 29 88 chr4 17997155 17997292 -184331055 + MLT1H LTR MaLR 420 548 -1 374 321 99 11 chr4 17998030 17998199 -184330148 + MIR3 SINE MIR 3 177 -41 455 194 19 103 chr4 17998241 17998396 -184329951 - MIR SINE MIR -21 241 100 219 226 32 0 chr4 17998537 17998599 -184329748 + A-rich Low_complexity Low_complexity 4 67 0 2020 197 7 17 chr4 17998869 17999280 -184329067 - MLT2D LTR ERVL 0 414 8 232 300 44 33 chr4 17999981 18000071 -184328276 - MIR SINE MIR -143 119 29 243 292 26 56 chr4 18000263 18000458 -184327889 + L1ME1 LINE L1 5630 5818 -303 25 0 0 0 chr4 18000553 18000578 -184327769 + AT_rich Low_complexity Low_complexity 1 25 0 1918 163 3 3 chr4 18000578 18000872 -184327475 - AluSx SINE Alu -18 294 1 1779 198 40 6 chr4 18000938 18001291 -184327056 + MLT1A1 LTR MaLR 1 365 0 398 262 35 7 chr4 18001405 18001550 -184326797 + L1ME1 LINE L1 6013 6161 -5 202 233 23 0 chr4 18001567 18001610 -184326737 - MER5B DNA MER1_type -134 44 1 189 0 0 0 chr4 18001917 18001938 -184326409 + (A)n Simple_repeat Simple_repeat 1 21 0 2454 109 0 0 chr4 18002660 18002972 -184325375 + AluSx SINE Alu 1 312 0 258 220 296 45 chr4 18003032 18003164 -184325183 - MIR SINE MIR -96 166 2 327 324 0 9 chr4 18003737 18003845 -184324502 + MIR SINE MIR 37 143 -65 357 355 59 15 chr4 18004069 18004272 -184324075 - HAL1b LINE L1 -550 798 587 314 322 17 8 chr4 18004893 18005011 -184323336 + L2 LINE L2 2930 3048 -224 2070 125 20 3 chr4 18005158 18005462 -184322885 - AluSx SINE Alu -3 309 1 247 375 88 6 chr4 18006173 18006333 -184322014 + MIR SINE MIR 22 194 -68 2411 81 0 7 chr4 18006763 18007071 -184321276 + AluY SINE Alu 1 306 -5 348 304 9 0 chr4 18007717 18007829 -184320518 + L1ME LINE L1 5164 5276 -870 1002 73 8 0 chr4 18007849 18007973 -184320374 + AluSc SINE Alu 1 125 -184 399 291 44 39 chr4 18007975 18008178 -184320169 + L1ME LINE L1 5271 5474 -688 313 157 3 0 chr4 18008422 18008491 -184319856 + MSTD LTR MaLR 329 422 -6 981 240 128 44 chr4 18008673 18009145 -184319202 + MLT1G1 LTR MaLR 7 553 -2 2147 121 7 0 chr4 18009614 18009912 -184318435 + AluSx SINE Alu 12 311 -1 1682 201 201 25 chr4 18009970 18010526 -184317821 - MLT1E1 LTR MaLR 0 654 1 406 122 0 14 chr4 18010529 18010603 -184317744 - MER53 DNA DNA 0 189 117 567 297 61 40 chr4 18010650 18010977 -184317370 - MER102b DNA MER1_type -3 338 5 2120 119 44 33 chr4 18011936 18012296 -184316051 + THE1B LTR MaLR 1 364 0 258 160 0 0 chr4 18012738 18012788 -184315559 + A-rich Low_complexity Low_complexity 1 50 0 1730 144 4 4 chr4 18013266 18013558 -184314789 + AluSx SINE Alu 18 309 0 9716 214 22 14 chr4 18013560 18017532 -184310815 + L1MC1 LINE L1 2326 7993 -2 449 268 39 24 chr4 18017544 18017671 -184310676 + MER5B DNA MER1_type 50 178 0 1034 186 5 5 chr4 18017679 18017867 -184310480 + MER5A DNA MER1_type 1 188 -1 293 368 35 35 chr4 18018168 18018312 -184310035 + L2 LINE L2 3124 3267 -5 797 239 66 36 chr4 18018427 18018728 -184309619 + MER2 DNA MER2_type 35 344 -1 429 276 141 6 chr4 18018731 18018901 -184309446 - MIR SINE MIR -69 193 1 282 352 37 0 chr4 18018903 18019011 -184309336 + MIR SINE MIR 34 145 -63 303 245 21 43 chr4 18019206 18019300 -184309047 - L1MC4 LINE L1 -1339 6703 6612 30 0 0 0 chr4 18019300 18019330 -184309017 + AT_rich Low_complexity Low_complexity 1 30 0 1950 105 40 11 chr4 18019330 18019606 -184308741 - AluSg SINE Alu -26 284 1 557 257 70 23 chr4 18019615 18019786 -184308561 - MLT1J2 LTR MaLR 0 450 272 327 281 103 38 chr4 18020292 18020358 -184307989 + L1ME4a LINE L1 5836 5896 -225 273 119 0 0 chr4 18020358 18020400 -184307947 + (TG)n Simple_repeat Simple_repeat 2 43 0 327 281 103 38 chr4 18020400 18020518 -184307829 + L1ME4a LINE L1 5896 6032 -89 375 254 134 15 chr4 18020694 18020828 -184307519 + L1MC4a LINE L1 5512 5661 -460 325 316 68 0 chr4 18020874 18020991 -184307356 + L1MC4a LINE L1 5765 5889 -1919 244 237 0 42 chr4 18021245 18021363 -184306984 + (TATATG)n Simple_repeat Simple_repeat 5 117 0 269 250 0 15 chr4 18021844 18021912 -184306435 + CT-rich Low_complexity Low_complexity 4 70 0 335 262 98 33 chr4 18022780 18022902 -184305445 + MIR SINE MIR 16 145 -63 304 386 83 0 chr4 18023373 18023505 -184304842 - L2 LINE L2 -19 3253 3111 402 239 189 57 chr4 18023556 18023715 -184304632 + MER5A DNA MER1_type 9 188 -1 360 281 10 0 chr4 18023751 18023847 -184304500 + MER81 DNA DNA 18 114 0 356 318 34 47 chr4 18024448 18024574 -184303773 + MIR SINE MIR 19 144 -118 3191 177 3 51 chr4 18024574 18025207 -184303140 - MER77 LTR ERV1 -2 603 1 356 318 34 47 chr4 18025207 18025228 -184303119 + MIR SINE MIR 144 164 -98 23 0 0 0 chr4 18025493 18025516 -184302831 + AT_rich Low_complexity Low_complexity 1 23 0 2741 229 89 50 chr4 18025516 18026359 -184301988 - HAL1b LINE L1 0 1348 446 2170 125 3 0 chr4 18026359 18026656 -184301691 + AluY SINE Alu 1 298 -13 2741 229 89 50 chr4 18026656 18026967 -184301380 - HAL1b LINE L1 -902 446 149 1732 278 100 2 chr4 18026970 18027840 -184300507 + L2 LINE L2 2224 3184 -129 1719 176 15 43 chr4 18028884 18029276 -184299071 - MLT1B LTR MaLR -9 381 1 290 258 102 16 chr4 18030429 18030557 -184297790 + L2 LINE L2 2567 2705 -609 206 343 30 0 chr4 18030931 18030998 -184297349 + L2 LINE L2 3245 3313 0 225 368 82 35 chr4 18031233 18031404 -184296943 - L3 LINE CR1 -11 1566 1388 470 356 42 9 chr4 18031507 18031723 -184296624 - L3 LINE CR1 -215 1362 1140 1477 233 55 19 chr4 18031785 18032218 -184296129 - LTR40b LTR ERVL 0 462 14 486 233 113 27 chr4 18032774 18032924 -184295423 - L2 LINE L2 0 3313 3151 1757 236 89 44 chr4 18032952 18034224 -184294123 + L1M2a LINE L1 1 2311 -4787 970 301 39 9 chr4 18034784 18035116 -184293231 - LTR16C LTR ERVL 0 491 150 4295 74 18 6 chr4 18035388 18036408 -184291939 + MER11A LTR ERVK 1 1266 0 1934 162 0 19 chr4 18036570 18036878 -184291469 + AluJo SINE Alu 1 302 -10 414 0 0 0 chr4 18037339 18037385 -184290962 + (CA)n Simple_repeat Simple_repeat 2 47 0 409 405 75 15 chr4 18037924 18038575 -184289772 - L2 LINE L2 -2207 1107 418 507 270 109 49 chr4 18038932 18039188 -184289159 + MIR SINE MIR 3 262 0 209 268 0 36 chr4 18040527 18040583 -184287764 + GA-rich Low_complexity Low_complexity 2 55 0 1323 203 89 12 chr4 18040592 18040918 -184287429 - MER39 LTR ERV1 0 707 357 1901 166 58 37 chr4 18040967 18041486 -184286861 + MLT2A2 LTR ERVL 1 553 -1 383 239 0 11 chr4 18041496 18041588 -184286759 - MER39 LTR ERV1 -616 91 1 281 330 35 0 chr4 18042651 18042766 -184285581 - MIR SINE MIR -42 220 102 439 239 162 48 chr4 18042781 18042948 -184285399 - MER5A DNA MER1_type 0 189 4 378 301 102 93 chr4 18043168 18043610 -184284737 - L2 LINE L2 0 3272 2827 536 348 12 43 chr4 18043982 18044238 -184284109 - MIR SINE MIR -2 260 13 468 271 35 106 chr4 18044512 18044647 -184283700 - MLT1I LTR MaLR -3 406 263 2061 108 74 37 chr4 18044647 18044998 -184283349 + THE1B LTR MaLR 1 364 0 468 271 35 106 chr4 18044998 18045239 -184283108 - MLT1I LTR MaLR -146 263 57 263 195 26 80 chr4 18046657 18046714 -184281633 - L1ME4a LINE L1 -5 6116 6066 2247 99 0 23 chr4 18046714 18047016 -184281331 + AluSq SINE Alu 1 295 -18 263 195 26 80 chr4 18047016 18047071 -184281276 - L1ME4a LINE L1 -55 6066 6010 279 234 90 62 chr4 18047290 18047435 -184280912 + MLT1I LTR MaLR 70 218 -191 301 273 76 15 chr4 18047630 18047828 -184280519 - L1ME4a LINE L1 -262 5859 5650 371 190 134 35 chr4 18047999 18048141 -184280206 - L1ME4a LINE L1 -2337 5471 5316 28 48 0 0 chr4 18048346 18048388 -184279959 + AT_rich Low_complexity Low_complexity 1 42 0 620 224 58 54 chr4 18048450 18048655 -184279692 - L2 LINE L2 0 3313 3108 288 267 30 15 chr4 18048756 18048891 -184279456 + MER65A LTR ERV1 1 137 -308 472 285 29 24 chr4 18049383 18049590 -184278757 - LTR16B LTR ERVL -151 313 106 319 268 124 45 chr4 18049706 18049971 -184278376 - L1ME4a LINE L1 -1713 4433 4148 407 294 44 44 chr4 18050227 18050475 -184277872 - L1ME4a LINE L1 -2836 3310 3063 577 247 119 46 chr4 18050585 18050779 -184277568 + MIR SINE MIR 43 250 -12 289 393 0 9 chr4 18051211 18051323 -184277024 + MIR SINE MIR 36 146 -62 467 241 95 9 chr4 18052718 18052834 -184275513 + L2 LINE L2 3188 3313 0 225 282 201 40 chr4 18052842 18052991 -184275356 - MIR SINE MIR -87 175 3 214 323 111 10 chr4 18052995 18053094 -184275253 + L3 LINE CR1 1112 1220 -357 212 292 15 0 chr4 18053118 18053183 -184275164 + MIR3 SINE MIR 95 160 -48 473 301 68 0 chr4 18053183 18053359 -184274988 - MER117 DNA MER1_type 0 197 10 542 189 9 0 chr4 18053476 18053582 -184274765 + MER7A DNA MER2_type 1 105 -241 14134 175 60 18 chr4 18053604 18060192 -184268155 - L1PB3 LINE L1 0 6870 6 328 255 21 48 chr4 18060938 18061083 -184267264 - LTR67 LTR ERVL -5 552 412 368 292 161 18 chr4 18061577 18061745 -184266602 - MIR SINE MIR -70 192 1 545 236 19 0 chr4 18061981 18062087 -184266260 + L2 LINE L2 3164 3271 -1 227 241 0 0 chr4 18062084 18062138 -184266209 - MIR SINE MIR 0 262 209 * 240 217 54 33 chr4 18062360 18062452 -184265895 - MLT1L LTR MaLR -329 286 193 243 299 75 9 chr4 18062589 18062696 -184265651 - MLT1K LTR MaLR -443 145 32 584 241 64 32 chr4 18063200 18063387 -184264960 + L2 LINE L2 3117 3309 -4 186 43 0 0 chr4 18066251 18066274 -184262073 + (TC)n Simple_repeat Simple_repeat 2 24 0 315 169 84 14 chr4 18067091 18067162 -184261185 + MIR SINE MIR 66 141 -121 1117 174 38 5 chr4 18067536 18067748 -184260599 + MER20 DNA MER1_type 1 219 0 219 105 53 0 chr4 18069059 18069097 -184259250 + T-rich Low_complexity Low_complexity 3 42 0 2133 99 0 0 chr4 18069681 18069985 -184258362 + AluY SINE Alu 1 304 0 208 255 0 0 chr4 18070046 18070093 -184258254 + L2 LINE L2 3158 3204 -68 198 0 0 0 chr4 18070398 18070420 -184257927 + (TA)n Simple_repeat Simple_repeat 2 23 0 297 299 93 0 chr4 18070785 18070882 -184257465 + MIR SINE MIR 104 209 -53 377 290 91 8 chr4 18071023 18071162 -184257185 + MIR3 SINE MIR 15 161 -63 285 29 0 0 chr4 18072282 18072316 -184256031 + (TTG)n Simple_repeat Simple_repeat 2 35 0 390 239 268 7 chr4 18072626 18072768 -184255579 + MIR SINE MIR 84 262 0 493 295 44 13 chr4 18072882 18073150 -184255197 - L2 LINE L2 -223 3049 2782 249 284 47 71 chr4 18073491 18073554 -184254793 - L2 LINE L2 -1 3312 3252 1960 166 31 8 chr4 18073554 18073909 -184254438 - MLT1A1 LTR MaLR 0 365 3 249 284 47 71 chr4 18073909 18073972 -184254375 - L2 LINE L2 -61 3252 3189 215 211 70 42 chr4 18075520 18075591 -184252756 + MIR3 SINE MIR 130 202 -6 6206 136 63 24 chr4 18076471 18076741 -184251606 + Tigger3b DNA MER2_type 5 263 -2765 2532 57 0 0 chr4 18076741 18077038 -184251309 - AluY SINE Alu -14 297 1 6206 136 63 24 chr4 18077038 18077947 -184250400 + Tigger3b DNA MER2_type 263 1230 -1 2601 58 0 0 chr4 18077994 18078305 -184250042 - AluY SINE Alu 0 311 1 367 243 76 97 chr4 18078342 18078486 -184249861 + MIR3 SINE MIR 18 158 -50 317 283 167 45 chr4 18079136 18079694 -184248653 - L1ME4a LINE L1 -14 6107 5482 1012 44 0 22 chr4 18079749 18079886 -184248461 + L1PA4 LINE L1 6022 6155 0 490 204 128 76 chr4 18080170 18080538 -184247809 + MLT1C LTR MaLR 6 387 -3 297 282 0 24 chr4 18080682 18080767 -184247580 - L2 LINE L2 -4 3309 3227 2199 112 0 0 chr4 18081194 18081488 -184246859 - AluSg SINE Alu -16 294 1 1311 223 52 52 chr4 18081628 18082013 -184246334 - MLT1B LTR MaLR -5 385 1 231 366 38 15 chr4 18082139 18082270 -184246077 - L2 LINE L2 -277 2995 2862 182 321 24 24 chr4 18082597 18082681 -184245666 - MIR SINE MIR -106 102 19 280 302 23 0 chr4 18083877 18083963 -184244384 - MIR SINE MIR -12 250 163 263 324 64 6 chr4 18084337 18084510 -184243837 - Charlie8 DNA MER1_type -1957 460 278 830 240 11 6 chr4 18084705 18084884 -184243463 - MER5A DNA MER1_type -7 182 3 448 344 112 6 chr4 18085142 18085473 -184242874 + L3b LINE CR1 1108 1473 -110 966 261 66 3 chr4 18085513 18085877 -184242470 - MER113 DNA MER1_type? 0 521 135 1879 152 72 26 chr4 18086021 18086369 -184241978 - THE1B LTR MaLR 0 364 1 276 350 29 0 chr4 18086441 18086544 -184241803 - MIR3 SINE MIR -48 160 55 429 109 0 0 chr4 18088272 18088336 -184240011 + (TG)n Simple_repeat Simple_repeat 2 65 0 268 260 117 0 chr4 18088345 18088422 -184239925 + L3 LINE CR1 1242 1327 -250 264 373 0 0 chr4 18088409 18088484 -184239863 + MER91 DNA MER1_type 66 140 0 * 1231 291 87 6 chr4 18088514 18088999 -184239348 + MLT1H LTR MaLR 11 534 -15 355 299 137 0 chr4 18089707 18089824 -184238523 - MER5B DNA MER1_type -45 133 1 348 228 105 0 chr4 18090208 18090322 -184238025 - MLT1L LTR MaLR -72 543 418 696 215 27 7 chr4 18090489 18090638 -184237709 - MLT1L LTR MaLR -423 192 41 22 0 0 0 chr4 18090672 18090694 -184237653 + AT_rich Low_complexity Low_complexity 1 22 0 2237 104 3 7 chr4 18090731 18091029 -184237318 - AluSg SINE Alu -13 297 1 818 212 140 93 chr4 18091358 18091873 -184236474 + L1MC5 LINE L1 6695 7233 -728 1225 106 80 73 chr4 18091923 18092198 -184236149 + Tigger7 DNA MER2_type 2211 2487 0 312 311 68 44 chr4 18092241 18092447 -184235900 - HAL1 LINE L1 -1472 1035 825 845 149 144 45 chr4 18092499 18092700 -184235647 + ORSL DNA AcHobo 42 262 -13 2614 254 33 9 chr4 18093647 18094195 -184234152 - L1M4 LINE L1 -1384 4762 4229 2402 81 7 0 chr4 18094195 18094491 -184233856 + AluSc SINE Alu 1 298 -11 2614 254 33 9 chr4 18094491 18094715 -184233632 - L1M4 LINE L1 -1917 4229 3963 2598 111 0 11 chr4 18094715 18095083 -184233264 - THE1B LTR MaLR 0 364 1 2614 254 33 9 chr4 18095083 18095206 -184233141 - L1M4 LINE L1 -2183 3963 3844 1021 167 84 152 chr4 18095207 18095689 -184232658 - MLT2D LTR ERVL -8 512 1 1003 219 117 6 chr4 18095691 18096034 -184232313 - L1M4 LINE L1 -2291 3855 3475 713 232 171 37 chr4 18096031 18096492 -184231855 - L1MDa LINE L1 -4933 1607 1085 * 2514 39 0 13 chr4 18096897 18097202 -184231145 - AluY SINE Alu -10 301 1 445 323 32 0 chr4 18099162 18099317 -184229030 - MIR SINE MIR -71 191 32 280 358 156 0 chr4 18099328 18099437 -184228910 - L2 LINE L2 -18 3254 3129 2569 121 5 0 chr4 18101857 18102230 -184226117 - THE1C LTR MaLR 0 375 1 228 184 0 0 chr4 18102498 18102547 -184225800 + (CA)n Simple_repeat Simple_repeat 2 50 0 302 326 182 0 chr4 18103268 18103400 -184224947 + L2 LINE L2 3112 3267 -5 647 327 118 14 chr4 18103519 18103883 -184224464 - L3 LINE CR1 -218 1359 958 2733 93 3 3 chr4 18104109 18104473 -184223874 + THE1B LTR MaLR 1 364 0 590 308 61 66 chr4 18104476 18105116 -184223231 + L2 LINE L2 1806 2442 -872 1812 132 10 0 chr4 18105384 18105672 -184222675 + L1PA13 LINE L1 5864 6154 -9 23 0 0 0 chr4 18105673 18105696 -184222651 + AT_rich Low_complexity Low_complexity 1 23 0 308 336 29 7 chr4 18105882 18106019 -184222328 + MIR3 SINE MIR 69 208 0 311 280 8 8 chr4 18106754 18106886 -184221461 - HAL1 LINE L1 -109 2398 2267 1088 60 0 0 chr4 18107094 18107228 -184221119 + AluY SINE Alu 164 297 -14 383 310 76 0 chr4 18107249 18107394 -184220953 - MLT1J LTR MaLR -328 183 28 333 214 95 71 chr4 18107488 18107614 -184220733 - HAL1 LINE L1 -285 2222 2094 325 248 61 71 chr4 18107735 18107933 -184220414 - MLT1H LTR MaLR -237 312 117 336 314 78 16 chr4 18108189 18108434 -184219913 - HAL1 LINE L1 -1658 849 590 2022 142 0 3 chr4 18108463 18108751 -184219596 - AluSx SINE Alu -25 287 1 1892 145 46 25 chr4 18108937 18109303 -184219044 + THE1C LTR MaLR 2 375 0 313 295 96 0 chr4 18109317 18109473 -184218874 + L1ME3A LINE L1 5706 5876 -294 23 0 0 0 chr4 18109543 18109566 -184218781 + AT_rich Low_complexity Low_complexity 1 23 0 2041 142 31 25 chr4 18109844 18110204 -184218143 - THE1B LTR MaLR 0 364 3 10591 95 7 11 chr4 18110206 18111668 -184216679 - THE1B-int LTR MaLR 0 1580 123 2189 81 41 14 chr4 18111668 18111963 -184216384 - AluY SINE Alu -8 303 1 10591 95 7 11 chr4 18111963 18112023 -184216324 - THE1B-int LTR MaLR -1457 123 64 2141 133 36 25 chr4 18112048 18112408 -184215939 - THE1B LTR MaLR 0 364 1 255 288 105 26 chr4 18112727 18113071 -184215276 + L1M4 LINE L1 2112 2482 -3664 269 329 69 4 chr4 18113331 18113560 -184214787 + LTR33A LTR ERVL 269 512 -11 1760 236 43 52 chr4 18113560 18114140 -184214207 - MLT1E2 LTR MaLR 0 626 52 310 275 25 0 chr4 18114404 18114494 -184213853 - MIR SINE MIR -65 143 64 180 253 88 77 chr4 18114672 18114763 -184213584 + L2 LINE L2 321 412 -2902 313 257 92 46 chr4 18114807 18114916 -184213431 + MIR SINE MIR 148 261 -1 329 276 71 0 chr4 18114927 18115025 -184213322 + MIR SINE MIR 100 204 -58 357 234 113 10 chr4 18116168 18116291 -184212056 + MIR SINE MIR 34 168 -67 229 283 17 17 chr4 18118220 18118280 -184210067 - L2 LINE L2 -12 3260 3201 198 255 226 29 chr4 18118307 18118409 -184209938 + MIR SINE MIR 104 225 -37 353 323 8 23 chr4 18118647 18118780 -184209567 + MIR SINE MIR 11 141 -121 1075 273 53 28 chr4 18118805 18119013 -184209334 - MLT1J1 LTR MaLR 0 446 245 1528 186 0 58 chr4 18119013 18119324 -184209023 - AluJo SINE Alu -1 311 19 1075 273 53 28 chr4 18119324 18119511 -184208836 - MLT1J1 LTR MaLR -201 245 41 347 284 20 10 chr4 18119571 18119673 -184208674 + MIR SINE MIR 157 259 -3 1050 323 38 14 chr4 18119694 18120329 -184208018 + L1MEc LINE L1 1204 1995 -4568 4851 114 6 0 chr4 18120334 18121054 -184207293 - L1PA14 LINE L1 -3 6158 5435 4109 209 22 0 chr4 18121054 18121871 -184206476 - L1PA12 LINE L1 -6746 835 1 48 60 0 0 chr4 18121927 18122010 -184206337 + AT_rich Low_complexity Low_complexity 1 83 0 471 247 41 62 chr4 18122158 18122221 -184206126 + L1MEc LINE L1 2191 2254 -4309 9949 85 3 3 chr4 18122221 18124373 -184203974 - L1PA7 LINE L1 -11 6143 3995 471 247 41 62 chr4 18124373 18124677 -184203670 + L1MEc LINE L1 2254 2550 -4013 23 0 0 0 chr4 18124709 18124732 -184203615 + AT_rich Low_complexity Low_complexity 1 23 0 2176 247 49 22 chr4 18124739 18125619 -184202728 + L1MEc LINE L1 3356 4259 -2123 1994 147 0 0 chr4 18125938 18126223 -184202124 + AluSx SINE Alu 1 285 -27 260 252 151 8 chr4 18126836 18126955 -184201392 + MIR3 SINE MIR 5 140 -68 684 242 121 20 chr4 18127442 18127739 -184200608 + MER46C DNA MER2_type 6 332 -6 2272 116 0 3 chr4 18127751 18128062 -184200285 - AluSx SINE Alu -2 310 1 344 280 38 45 chr4 18129050 18129207 -184199140 - MIR SINE MIR -50 212 57 1985 140 3 0 chr4 18129224 18129524 -184198823 + AluSx SINE Alu 1 301 -11 306 209 30 0 chr4 18129799 18129866 -184198481 - L1ME4a LINE L1 -6 6115 6047 413 289 54 82 chr4 18129990 18130284 -184198063 - L1ME LINE L1 -571 5550 5265 308 345 50 47 chr4 18130319 18130577 -184197770 - L1ME LINE L1 -924 5222 4964 25 31 0 0 chr4 18131695 18131727 -184196620 + AT_rich Low_complexity Low_complexity 1 32 0 458 205 18 18 chr4 18131966 18132078 -184196269 + L1ME LINE L1 5616 5727 -394 1078 274 89 6 chr4 18132601 18132962 -184195385 - MLT1F1 LTR MaLR 0 567 177 286 77 0 0 chr4 18132998 18133037 -184195310 + MER53 DNA DNA 1 39 -150 1188 218 110 5 chr4 18133037 18133483 -184194864 + L1 LINE L1 2984 3476 -2670 2482 150 27 23 chr4 18133484 18133958 -184194389 + L1MB2 LINE L1 5678 6153 -18 809 182 6 0 chr4 18133986 18134156 -184194191 + MER53 DNA DNA 15 185 -4 576 260 7 13 chr4 18134171 18134325 -184194022 - MLT1F1 LTR MaLR -438 155 3 568 175 7 91 chr4 18134415 18134558 -184193789 + MER94 DNA DNA 1 131 -3 317 304 22 43 chr4 18134902 18135040 -184193307 + MIR SINE MIR 8 142 -120 197 109 65 87 chr4 18135082 18135128 -184193219 - L2 LINE L2 0 3313 3269 1661 211 49 51 chr4 18135742 18136229 -184192118 - MLT1D LTR MaLR 0 505 20 188 346 39 0 chr4 18136499 18136577 -184191770 + MIR SINE MIR 30 110 -98 318 343 49 7 chr4 18136688 18136831 -184191516 - L2 LINE L2 -9 3263 3115 656 178 27 0 chr4 18137121 18137267 -184191080 + L1MA4 LINE L1 6151 6300 0 215 286 112 31 chr4 18138794 18138892 -184189455 - MIR SINE MIR -71 137 32 2304 81 7 10 chr4 18139043 18139338 -184189009 + AluSx SINE Alu 5 298 -14 582 273 99 67 chr4 18140101 18140822 -184187525 + L1MC5 LINE L1 7101 7846 -196 2985 115 14 18 chr4 18140822 18141266 -184187081 + L1PB3 LINE L1 5711 6152 -2 582 273 99 67 chr4 18141266 18141425 -184186922 + L1MC5 LINE L1 7846 7998 -44 256 368 34 39 chr4 18141576 18141780 -184186567 - MIR3 SINE MIR -2 206 4 275 330 153 0 chr4 18142055 18142173 -184186174 + MIR3 SINE MIR 8 143 -65 2075 106 32 0 chr4 18143078 18143360 -184184987 + AluSx SINE Alu 1 291 -21 22 0 0 0 chr4 18143626 18143648 -184184699 + AT_rich Low_complexity Low_complexity 1 22 0 470 252 13 96 chr4 18143713 18143943 -184184404 - L1ME4a LINE L1 -76 6045 5835 251 281 49 12 chr4 18144304 18144386 -184183961 - MIR SINE MIR -48 214 130 765 319 95 11 chr4 18144387 18144766 -184183581 - LTR67 LTR ERVL -114 443 33 1479 172 0 47 chr4 18144793 18145113 -184183234 + AluJo SINE Alu 1 306 0 189 0 0 0 chr4 18145961 18145982 -184182365 + (CA)n Simple_repeat Simple_repeat 2 22 0 354 256 70 31 chr4 18146604 18146733 -184181614 + MIR3 SINE MIR 8 141 -67 514 328 50 17 chr4 18146981 18147222 -184181125 - MIR SINE MIR -6 256 8 23 0 0 0 chr4 18147371 18147394 -184180953 + AT_rich Low_complexity Low_complexity 1 23 0 615 193 52 62 chr4 18148216 18148408 -184179939 + MER112 DNA MER1_type 67 256 -4 529 73 0 0 chr4 18149224 18149292 -184179055 - L1PA11 LINE L1 -3 6171 6104 277 108 0 0 chr4 18149292 18149329 -184179018 + L1PA11 LINE L1 6071 6107 -67 1292 122 16 5 chr4 18149331 18149519 -184178828 + AluSp SINE Alu 108 297 -16 3897 139 12 47 chr4 18150339 18151017 -184177330 + L1MA10 LINE L1 5681 6334 0 270 233 0 55 chr4 18151129 18151202 -184177145 - L3 LINE CR1 -611 966 898 335 286 86 0 chr4 18151950 18152125 -184176222 + L2 LINE L2 2821 3010 -303 2419 77 0 10 chr4 18152134 18152446 -184175901 - AluSc SINE Alu 0 309 1 785 274 108 48 chr4 18152485 18152919 -184175428 - MLT1L LTR MaLR 0 615 156 565 252 26 32 chr4 18153153 18153308 -184175039 + L2 LINE L2 3160 3313 0 238 313 26 17 chr4 18153558 18153673 -184174674 + L2 LINE L2 2383 2498 -816 3465 38 10 2 chr4 18154889 18155289 -184173058 - L1PA4 LINE L1 -3 6152 5750 1044 0 0 0 chr4 18155289 18155400 -184172947 + L1P1 LINE L1 5546 5656 -499 1752 243 61 73 chr4 18155961 18156525 -184171822 - MLT1E LTR MaLR -4 569 1 231 188 0 0 chr4 18156531 18156579 -184171768 + CT-rich Low_complexity Low_complexity 1 48 0 1543 221 17 34 chr4 18156660 18157017 -184171330 - MLT1A1 LTR MaLR -14 351 1 257 280 44 110 chr4 18157032 18157214 -184171133 - L2 LINE L2 -109 3163 2994 192 306 0 0 chr4 18157227 18157276 -184171071 + L2 LINE L2 3219 3267 -5 1839 149 17 17 chr4 18157633 18157935 -184170412 - AluSx SINE Alu -5 307 6 524 309 68 19 chr4 18157951 18158158 -184170189 + Tigger8 DNA MER2_type 25 241 -425 3399 139 28 15 chr4 18158252 18158786 -184169561 - L1PB4 LINE L1 0 6156 5616 802 230 73 90 chr4 18158847 18159005 -184169342 + Tigger8 DNA MER2_type 205 364 -302 2561 63 0 3 chr4 18159005 18159308 -184169039 + AluY SINE Alu 1 302 -9 802 230 73 90 chr4 18159308 18159614 -184168733 + Tigger8 DNA MER2_type 364 661 -5 328 268 62 9 chr4 18160564 18160676 -184167671 - MIR SINE MIR -73 135 18 208 324 29 39 chr4 18160703 18160781 -184167566 - L2 LINE L2 -225 3047 2969 1874 163 64 14 chr4 18160781 18161125 -184167222 - MLT1A1 LTR MaLR 0 365 5 208 324 29 39 chr4 18161125 18161148 -184167199 - L2 LINE L2 -303 2969 2947 182 261 114 45 chr4 18161479 18161567 -184166780 - MIR SINE MIR -147 115 22 329 268 58 58 chr4 18162127 18162265 -184166082 - MIR SINE MIR -79 183 46 357 279 0 0 chr4 18162568 18162654 -184165693 - MIR SINE MIR -21 241 156 257 293 113 0 chr4 18162789 18162895 -184165452 - MIR SINE MIR -73 135 18 410 274 43 0 chr4 18162943 18163060 -184165287 + MIR SINE MIR 67 188 -74 458 277 36 0 chr4 18163752 18163889 -184164458 + MIR3 SINE MIR 60 201 -7 524 219 34 0 chr4 18164194 18164313 -184164034 - MER94 DNA DNA -8 126 4 387 241 65 80 chr4 18164337 18164536 -184163811 - MIR SINE MIR -18 244 49 263 315 28 9 chr4 18164919 18165027 -184163320 + MIR SINE MIR 28 137 -125 443 316 76 99 chr4 18165239 18165903 -184162444 + L2 LINE L2 2553 3214 -58 223 175 0 0 chr4 18165936 18165976 -184162371 + (TTCA)n Simple_repeat Simple_repeat 2 41 0 201 186 0 0 chr4 18166376 18166390 -184161957 + GA-rich Low_complexity Low_complexity 2 15 -29 2125 138 3 0 chr4 18166390 18166686 -184161661 + AluSx SINE Alu 1 297 -15 201 186 0 0 chr4 18166686 18166714 -184161633 + GA-rich Low_complexity Low_complexity 14 44 0 492 284 135 62 chr4 18166922 18167373 -184160974 + MLT1J LTR MaLR 5 488 -23 242 302 10 62 chr4 18167666 18167762 -184160585 + L2 LINE L2 3007 3097 -175 314 333 106 8 chr4 18167864 18167987 -184160360 - L2 LINE L2 -19 3253 3119 186 298 21 0 chr4 18168040 18168087 -184160260 - MIR SINE MIR -207 55 8 * 196 242 48 16 chr4 18168073 18168135 -184160212 + L2 LINE L2 2206 2269 -1045 482 119 24 0 chr4 18168227 18168311 -184160036 + L1MA10 LINE L1 6249 6334 0 255 160 20 20 chr4 18168760 18168810 -184159537 + L2 LINE L2 3215 3264 -8 2693 142 5 10 chr4 18169243 18169653 -184158694 + L1PA16 LINE L1 5759 6166 0 2161 122 0 10 chr4 18169957 18170260 -184158087 + AluJb SINE Alu 1 300 -12 706 200 36 0 chr4 18170725 18170865 -184157482 + MER5A DNA MER1_type 1 145 -44 1386 163 49 30 chr4 18171417 18171858 -184156489 + LTR54 LTR ERV1 1 403 0 686 201 71 19 chr4 18171878 18172032 -184156315 + MIR SINE MIR 67 228 -34 207 0 0 0 chr4 18172641 18172664 -184155683 + (T)n Simple_repeat Simple_repeat 1 23 0 201 39 0 0 chr4 18173610 18173636 -184154711 + (TG)n Simple_repeat Simple_repeat 2 27 0 304 294 34 42 chr4 18174371 18174490 -184153857 + LTR67 LTR ERVL 429 546 -11 497 290 90 25 chr4 18174670 18174870 -184153477 + MIR SINE MIR 7 219 -43 315 259 61 41 chr4 18174948 18175095 -184153252 - L1MEc LINE L1 -4066 2330 2181 638 156 40 0 chr4 18175136 18175309 -184153038 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 2236 122 55 12 chr4 18175326 18175669 -184152678 - THE1B LTR MaLR -6 358 1 587 71 12 0 chr4 18175685 18175770 -184152577 + (TAGA)n Simple_repeat Simple_repeat 1 86 0 248 327 6 42 chr4 18175779 18175944 -184152403 - L1MEc LINE L1 -4317 2079 1921 1160 189 38 9 chr4 18176122 18176334 -184152013 - MER20 DNA MER1_type -1 218 1 285 230 0 0 chr4 18176551 18176625 -184151722 + (TG)n Simple_repeat Simple_repeat 2 75 0 448 192 0 0 chr4 18176857 18176935 -184151412 - MER20 DNA MER1_type -30 189 112 180 237 165 41 chr4 18177138 18177235 -184151112 + MIR3 SINE MIR 81 189 -19 368 348 83 43 chr4 18177258 18177655 -184150692 + L3 LINE CR1 281 693 -884 2272 119 0 6 chr4 18177698 18178010 -184150337 + AluSq SINE Alu 1 310 -3 438 325 13 20 chr4 18179521 18179672 -184148675 - L2 LINE L2 -1 3312 3163 2531 200 95 25 chr4 18179673 18180314 -184148033 + MER76 LTR ERV 1 686 -2 397 272 238 19 chr4 18181524 18181931 -184146416 - L2 LINE L2 -183 3130 2624 215 139 0 23 chr4 18182068 18182111 -184146236 + (CAAA)n Simple_repeat Simple_repeat 3 44 0 372 238 38 38 chr4 18182642 18182747 -184145600 - MIR SINE MIR -3 259 155 2595 139 35 2 chr4 18182747 18183150 -184145197 + LTR45B LTR ERV1 3 418 -71 234 0 0 0 chr4 18183154 18183180 -184145167 + (A)n Simple_repeat Simple_repeat 1 26 0 321 238 36 0 chr4 18183246 18183330 -184145017 - MIR SINE MIR -106 156 70 745 277 85 0 chr4 18183618 18183806 -184144541 - MER63A DNA MER1_type -5 205 2 463 220 76 34 chr4 18184491 18184609 -184143738 - L2 LINE L2 -16 3297 3175 527 276 102 30 chr4 18184824 18185055 -184143292 + MIR SINE MIR 14 258 -4 21 0 0 0 chr4 18185069 18185090 -184143257 + AT_rich Low_complexity Low_complexity 1 21 0 413 319 7 22 chr4 18186165 18186303 -184142044 - MER5A DNA MER1_type 0 189 54 1151 197 62 97 chr4 18186358 18186515 -184141832 - L1MC4 LINE L1 -751 7291 7130 1942 146 10 10 chr4 18186515 18186816 -184141531 - AluSx SINE Alu -8 304 4 1151 197 62 97 chr4 18186816 18187124 -184141223 - L1MC4 LINE L1 -912 7130 6842 1425 212 8 79 chr4 18187161 18187653 -184140694 + L1MC4 LINE L1 7347 7808 0 21 36 0 0 chr4 18187752 18187780 -184140567 + AT_rich Low_complexity Low_complexity 1 28 0 285 261 36 18 chr4 18187829 18187940 -184140407 - MER113 DNA MER1_type? -401 120 8 2051 133 0 3 chr4 18188135 18188442 -184139905 + AluSx SINE Alu 1 306 0 704 163 98 0 chr4 18188455 18188578 -184139769 + AluJb SINE Alu 2 136 -176 1422 204 25 4 chr4 18188579 18188853 -184139494 + AluJb SINE Alu 3 282 -30 192 97 0 0 chr4 18188858 18188889 -184139458 + (CAA)n Simple_repeat Simple_repeat 2 32 0 385 170 170 11 chr4 18189507 18189601 -184138746 - MER5A DNA MER1_type -77 112 4 316 367 61 0 chr4 18190130 18190228 -184138119 + L2 LINE L2 3153 3256 -16 766 196 30 12 chr4 18190277 18190445 -184137902 - MER104 DNA Tc2 -4 176 6 4364 77 3 19 chr4 18190583 18191157 -184137190 - L1PB2 LINE L1 0 6151 5587 2950 94 11 3 chr4 18191519 18191891 -184136456 - THE1C LTR MaLR 0 375 1 477 252 113 0 chr4 18192164 18192323 -184136024 + MIR SINE MIR 86 262 0 199 81 0 108 chr4 18194225 18194262 -184134085 + MIR SINE MIR 220 252 -10 1744 102 4 0 chr4 18194340 18194565 -184133782 + AluSp SINE Alu 3 228 -85 247 353 33 27 chr4 18195174 18195324 -184133023 - L2 LINE L2 -190 3082 2932 1367 178 90 90 chr4 18195447 18195522 -184132825 + MLT1A1 LTR MaLR 1 75 -290 2409 82 0 3 chr4 18195522 18195826 -184132521 - AluY SINE Alu -6 305 3 1367 178 90 90 chr4 18195826 18196115 -184132232 + MLT1A1 LTR MaLR 74 365 0 2465 97 0 0 chr4 18196374 18196682 -184131665 + AluSq SINE Alu 1 308 -5 832 240 64 0 chr4 18197321 18197525 -184130822 + MIR SINE MIR 36 252 -10 1106 283 61 23 chr4 18197525 18197917 -184130430 - MLT1I LTR MaLR 0 409 3 229 274 0 0 chr4 18198096 18198147 -184130200 + (CA)n Simple_repeat Simple_repeat 2 52 0 2173 125 0 0 chr4 18198255 18198551 -184129796 + AluSx SINE Alu 1 296 -16 243 125 0 0 chr4 18198696 18198736 -184129611 + (CA)n Simple_repeat Simple_repeat 1 40 0 414 330 57 14 chr4 18198877 18199086 -184129261 + L2 LINE L2 2366 2583 -731 394 244 0 0 chr4 18199089 18199167 -184129180 - MER20 DNA MER1_type -1 218 141 3766 214 100 18 chr4 18199167 18200708 -184127639 + L1MCb LINE L1 273 1936 -4490 4058 149 32 11 chr4 18200709 18201372 -184126975 - L1PB4 LINE L1 0 6156 5480 5258 94 12 1 chr4 18201375 18202067 -184126280 + L1PA10 LINE L1 5465 6163 -5 1719 161 43 2 chr4 18202067 18202519 -184125828 - L1PB4 LINE L1 -677 5479 5017 * 4266 186 33 8 chr4 18202517 18203394 -184124953 + L1PB4 LINE L1 4132 5030 -1116 1761 211 114 13 chr4 18203393 18204026 -184124321 + L1MCb LINE L1 1935 2668 -3939 * 775 332 54 55 chr4 18204100 18204235 -184124112 + L2 LINE L2 2580 2714 -558 1785 150 26 0 chr4 18204235 18204501 -184123846 + AluSx SINE Alu 3 275 -37 238 78 20 20 chr4 18204509 18204560 -184123787 + (CAAAA)n Simple_repeat Simple_repeat 2 52 0 775 332 54 55 chr4 18204560 18205109 -184123238 + L2 LINE L2 2721 3272 0 279 271 42 8 chr4 18205120 18205238 -184123109 - L1ME LINE L1 -280 5841 5720 21 0 0 0 chr4 18205251 18205272 -184123075 + AT_rich Low_complexity Low_complexity 1 21 0 245 73 0 24 chr4 18205477 18205518 -184122829 + (GA)n Simple_repeat Simple_repeat 1 40 0 192 40 0 0 chr4 18205674 18205699 -184122648 + (TG)n Simple_repeat Simple_repeat 2 26 0 2675 137 24 18 chr4 18205759 18206443 -184121904 + L1PB1 LINE L1 4983 5668 -498 2865 95 3 0 chr4 18206453 18206822 -184121525 + L1PB1 LINE L1 5782 6151 0 3336 130 8 12 chr4 18206822 18207325 -184121022 + L1PA16 LINE L1 5652 6157 -9 345 109 0 0 chr4 18207439 18207494 -184120853 + (TC)n Simple_repeat Simple_repeat 1 55 0 225 67 0 0 chr4 18207494 18207539 -184120808 - LTR66 LTR ERVL -172 438 394 239 154 0 19 chr4 18207547 18207599 -184120748 + (TA)n Simple_repeat Simple_repeat 1 51 0 254 261 0 14 chr4 18207674 18207743 -184120604 - L1ME LINE L1 -457 5664 5597 2162 118 0 13 chr4 18208131 18208444 -184119903 - AluSc SINE Alu 0 309 1 6518 121 23 0 chr4 18208741 18209738 -184118609 - L1MA9 LINE L1 0 6312 5293 657 247 96 58 chr4 18209959 18210185 -184118162 + L1MC4a LINE L1 5622 5863 -1945 2357 70 0 0 chr4 18210185 18210470 -184117877 - AluY SINE Alu -26 285 1 657 247 96 58 chr4 18210470 18210535 -184117812 + L1MC4a LINE L1 5863 5924 -1884 1244 167 50 0 chr4 18210650 18210848 -184117499 - AluJb SINE Alu -19 293 86 339 345 81 39 chr4 18211105 18211605 -184116742 - L2 LINE L2 0 3272 2730 1678 231 58 22 chr4 18211606 18212052 -184116295 - MLT1C LTR MaLR 0 467 6 183 227 213 13 chr4 18212292 18212367 -184115980 - MIR SINE MIR -147 115 26 375 193 0 0 chr4 18213090 18213173 -184115174 + GA-rich Low_complexity Low_complexity 2 84 0 1997 125 3 10 chr4 18214626 18214929 -184113418 + L1MA5 LINE L1 5998 6298 -2 194 228 89 79 chr4 18215335 18215436 -184112911 - MIR SINE MIR -117 145 44 247 324 10 10 chr4 18215469 18215571 -184112776 + L3 LINE CR1 1315 1416 -161 200 290 45 71 chr4 18216272 18216427 -184111920 + L2 LINE L2 2909 3059 -213 187 238 24 0 chr4 18216742 18216784 -184111563 + L2 LINE L2 3211 3253 -19 345 272 136 43 chr4 18216790 18216906 -184111441 - L2 LINE L2 0 3313 3172 183 42 0 0 chr4 18216906 18216930 -184111417 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 345 272 136 43 chr4 18216930 18216997 -184111350 - L2 LINE L2 -141 3172 3113 829 284 29 16 chr4 18217292 18217535 -184110812 + MIR SINE MIR 8 253 -9 208 250 0 0 chr4 18217937 18217981 -184110366 - MIR SINE MIR -24 238 195 1350 168 50 50 chr4 18218163 18218485 -184109862 - MER33 DNA MER1_type -1 323 2 435 268 131 27 chr4 18218513 18218606 -184109741 - MIR SINE MIR -12 250 168 1379 144 0 106 chr4 18218606 18218870 -184109477 - MER46A DNA MER2_type 0 236 1 435 268 131 27 chr4 18218870 18218985 -184109362 - MIR SINE MIR -94 168 26 351 252 86 36 chr4 18220413 18220552 -184107795 - MIR3 SINE MIR -3 205 60 425 302 23 8 chr4 18220903 18221032 -184107315 - MIR SINE MIR -71 191 61 730 267 92 52 chr4 18222196 18222751 -184105596 + L1ME4a LINE L1 5545 6121 0 414 261 139 24 chr4 18223153 18223318 -184105029 - L2 LINE L2 -4 3309 3126 285 100 0 0 chr4 18223938 18223988 -184104359 + (CA)n Simple_repeat Simple_repeat 2 51 0 213 225 0 99 chr4 18224615 18224686 -184103661 + L2 LINE L2 3249 3312 -1 375 23 0 0 chr4 18225521 18225565 -184102782 + (TG)n Simple_repeat Simple_repeat 2 45 0 2273 118 0 3 chr4 18226075 18226388 -184101959 + AluSx SINE Alu 1 312 0 258 125 0 0 chr4 18227111 18227159 -184101188 + (TC)n Simple_repeat Simple_repeat 2 49 0 207 0 0 0 chr4 18227159 18227182 -184101165 + (CA)n Simple_repeat Simple_repeat 1 23 0 1369 202 6 56 chr4 18227733 18227968 -184100379 - MER33 DNA MER1_type -2261 324 110 2082 139 3 0 chr4 18227968 18228271 -184100076 + AluSx SINE Alu 1 304 -8 1369 202 6 56 chr4 18228271 18228376 -184099971 - MER33 DNA MER1_type -2475 110 1 208 237 92 150 chr4 18230096 18230497 -184097850 + L2 LINE L2 2818 3195 -77 2576 128 81 8 chr4 18230572 18230969 -184097378 + MSTA LTR MaLR 3 428 0 1464 224 33 57 chr4 18231040 18231465 -184096882 + MLT1C LTR MaLR 46 460 -7 280 249 83 35 chr4 18233180 18233349 -184094998 + L1MC4 LINE L1 7784 7960 -82 2142 118 3 0 chr4 18233773 18234061 -184094286 - AluSx SINE Alu -23 289 1 2167 80 11 14 chr4 18234904 18235191 -184093156 - L1PA10 LINE L1 -2 6166 5881 2472 201 56 20 chr4 18235426 18235928 -184092419 - MLT2B1 LTR ERVL 0 520 1 208 308 196 23 chr4 18235953 18236167 -184092180 - MIR SINE MIR 0 262 12 1854 148 0 46 chr4 18236401 18236725 -184091622 + AluSq SINE Alu 1 309 -4 951 234 11 80 chr4 18237387 18237661 -184090686 + MIR SINE MIR 8 262 0 2056 127 170 16 chr4 18237942 18238313 -184090034 + MSTA LTR MaLR 1 428 0 482 292 110 42 chr4 18239507 18239935 -184088412 - L1ME4a LINE L1 -21 6100 5644 385 258 76 0 chr4 18240252 18240384 -184087963 - MIR SINE MIR 0 262 121 51 58 0 0 chr4 18241775 18241861 -184086486 + AT_rich Low_complexity Low_complexity 1 86 0 2150 75 0 8 chr4 18241918 18242186 -184086161 + AluSg SINE Alu 37 302 -8 1116 193 111 57 chr4 18242337 18242705 -184085642 - LTR37A LTR ERV1 0 426 39 1349 278 78 15 chr4 18242954 18243350 -184084997 - LTR16C LTR ERVL 0 491 71 2128 125 23 0 chr4 18243961 18244266 -184084081 + AluSx SINE Alu 1 312 0 278 214 95 12 chr4 18244616 18244700 -184083647 - MIR SINE MIR -120 142 52 255 306 71 0 chr4 18244806 18244904 -184083443 - MIR SINE MIR -120 142 38 2377 142 113 10 chr4 18245359 18245747 -184082600 - MSTA LTR MaLR 0 428 1 2410 110 75 5 chr4 18245748 18246121 -184082226 - MSTA-int LTR MaLR -1 1650 1252 487 316 128 16 chr4 18246145 18246311 -184082036 - L2 LINE L2 0 3313 3167 2408 236 83 11 chr4 18246311 18246862 -184081485 + MLT1E LTR MaLR 1 591 -2 487 316 128 16 chr4 18246862 18247015 -184081332 - L2 LINE L2 -146 3167 2958 291 287 18 49 chr4 18247011 18247175 -184081172 + MIR SINE MIR 96 254 -8 * 2266 119 3 6 chr4 18247556 18247868 -184080479 + AluSx SINE Alu 1 311 -1 282 95 0 0 chr4 18247981 18248023 -184080324 + (CA)n Simple_repeat Simple_repeat 1 42 0 1937 204 13 21 chr4 18248487 18248864 -184079483 + MLT1A2 LTR MaLR 1 374 0 2316 101 7 7 chr4 18249426 18249734 -184078613 + AluSc SINE Alu 1 308 -1 226 186 14 114 chr4 18249755 18249825 -184078522 + MLT1K LTR MaLR 509 571 -17 1020 280 95 63 chr4 18249825 18250980 -184077367 + L2 LINE L2 2116 3313 0 193 348 80 0 chr4 18251402 18251514 -184076833 - MIR3 SINE MIR -1 207 87 228 339 0 0 chr4 18252754 18252819 -184075528 - L2 LINE L2 -6 3266 3202 1494 226 150 93 chr4 18252893 18253431 -184074916 + MLT1E LTR MaLR 1 593 0 1476 234 42 0 chr4 18253431 18253739 -184074608 + MER58B DNA MER1_type 6 326 -15 2274 87 13 3 chr4 18253905 18254204 -184074143 - AluSc SINE Alu -7 302 1 476 300 0 0 chr4 18255808 18255918 -184072429 + MER81 DNA DNA 5 114 0 990 208 81 120 chr4 18256315 18256723 -184071624 - MLT1A1 LTR MaLR -4 361 1 1705 198 78 58 chr4 18256893 18257342 -184071005 - MLT1C LTR MaLR -4 463 6 291 314 148 54 chr4 18257791 18258587 -184069760 + L2 LINE L2 1786 2656 -658 1195 168 53 10 chr4 18258612 18258820 -184069527 - MER20 DNA MER1_type 0 219 3 255 367 67 40 chr4 18258976 18259126 -184069221 + L2 LINE L2 3118 3271 -1 347 333 44 31 chr4 18259466 18259625 -184068722 + MIR SINE MIR 7 167 -95 330 278 66 81 chr4 18259620 18259711 -184068636 - L2 LINE L2 -1 3312 3221 * 2146 108 20 0 chr4 18259711 18260006 -184068341 + AluSx SINE Alu 1 301 -11 330 278 66 81 chr4 18260006 18260112 -184068235 - L2 LINE L2 -92 3221 3118 216 241 0 17 chr4 18260197 18260255 -184068092 + MIR SINE MIR 165 221 -41 552 218 128 62 chr4 18260325 18260573 -184067774 - MIR SINE MIR -6 256 2 962 217 19 28 chr4 18261487 18261699 -184066648 + MER63A DNA MER1_type 1 210 0 446 273 79 14 chr4 18261785 18261924 -184066423 + MIR3 SINE MIR 4 151 -57 1410 200 25 4 chr4 18261924 18262199 -184066148 + AluJo SINE Alu 1 281 -31 335 259 53 111 chr4 18262222 18262411 -184065936 - MER5B DNA MER1_type 0 178 1 2006 262 102 9 chr4 18262445 18262987 -184065360 + MLT1E LTR MaLR 1 592 -1 22 0 0 0 chr4 18263119 18263141 -184065206 + AT_rich Low_complexity Low_complexity 1 22 0 1954 208 94 84 chr4 18263269 18263333 -184065014 - MLT1E LTR MaLR 0 593 531 2496 164 20 18 chr4 18263333 18263777 -184064570 + L1MB2 LINE L1 5710 6157 -14 2907 83 11 3 chr4 18263777 18264138 -184064209 + THE1B LTR MaLR 1 364 0 2496 164 20 18 chr4 18264138 18264149 -184064198 + L1MB2 LINE L1 6157 6166 -5 1954 208 94 84 chr4 18264149 18264670 -184063677 - MLT1E LTR MaLR -62 531 2 381 220 76 0 chr4 18264679 18264784 -184063563 - MIR SINE MIR -62 146 28 1145 110 0 0 chr4 18264844 18264999 -184063348 + L1PA15 LINE L1 6011 6165 0 1430 186 16 86 chr4 18264999 18265035 -184063312 - MER93b LTR ERV1 -7 366 329 2307 94 0 10 chr4 18265035 18265333 -184063014 + AluSp SINE Alu 1 295 -18 1430 186 16 86 chr4 18265333 18265678 -184062669 - MER93b LTR ERV1 -44 329 12 588 42 0 0 chr4 18266043 18266115 -184062232 + AluSp/q SINE Alu 230 301 -12 24 0 0 0 chr4 18266289 18266313 -184062034 + AT_rich Low_complexity Low_complexity 1 24 0 608 254 88 19 chr4 18267340 18267545 -184060802 + MIR SINE MIR 3 221 -41 352 259 113 88 chr4 18267730 18267969 -184060378 + L2 LINE L2 3027 3271 -1 746 186 118 0 chr4 18268255 18268416 -184059931 + MER104 DNA MER2_type 1 180 0 195 100 0 0 chr4 18269215 18269245 -184059102 + (TC)n Simple_repeat Simple_repeat 2 31 0 198 71 0 0 chr4 18269245 18269273 -184059074 + (CA)n Simple_repeat Simple_repeat 1 28 0 412 273 40 13 chr4 18269868 18270018 -184058329 - MER103 DNA DNA -10 156 3 438 340 72 0 chr4 18270077 18270230 -184058117 + MIR3 SINE MIR 38 201 -7 28 0 0 0 chr4 18271489 18271517 -184056830 + AT_rich Low_complexity Low_complexity 1 28 0 249 271 0 0 chr4 18271793 18271852 -184056495 + MER3 DNA MER1_type 3 61 -148 811 152 97 14 chr4 18271935 18272080 -184056267 + MER3 DNA MER1_type 53 209 0 244 350 60 16 chr4 18272458 18272641 -184055706 + L3 LINE CR1 1064 1254 -323 2371 136 52 0 chr4 18273401 18273747 -184054600 - THE1B LTR MaLR 0 364 1 302 183 14 0 chr4 18274384 18274455 -184053892 + GA-rich Low_complexity Low_complexity 3 74 0 263 54 0 0 chr4 18274722 18274759 -184053588 + L1MA3 LINE L1 6269 6305 0 364 338 36 31 chr4 18275424 18275649 -184052698 + L1M4 LINE L1 2316 2541 -3605 4512 116 17 49 chr4 18275781 18276497 -184051850 - L1PA16 LINE L1 -9 6157 5465 462 271 106 85 chr4 18276585 18277057 -184051290 + L1M4 LINE L1 2811 3292 -2854 2208 97 3 3 chr4 18277057 18277345 -184051002 + AluSq SINE Alu 1 288 -25 649 237 143 18 chr4 18277452 18277676 -184050671 + MIR SINE MIR 11 262 0 227 292 78 70 chr4 18277700 18278083 -184050264 + L1M4 LINE L1 3386 3771 -2375 927 112 0 8 chr4 18278085 18278219 -184050128 - AluSq/x SINE Alu -179 133 1 343 297 76 63 chr4 18278261 18278594 -184049753 + L1M4 LINE L1 3826 4170 -1976 6540 34 3 0 chr4 18278594 18279328 -184049019 - L1PA4 LINE L1 0 6155 5420 343 297 76 63 chr4 18279328 18279549 -184048798 + L1M4 LINE L1 4170 4387 -1759 259 288 72 36 chr4 18279557 18279696 -184048651 - LTR67 LTR ERVL -21 536 393 1062 164 169 0 chr4 18279709 18279928 -184048419 + MSTB1-int LTR MaLR 1396 1651 0 1499 199 28 71 chr4 18279928 18280142 -184048205 + MSTB1 LTR MaLR 1 192 -240 2331 74 3 3 chr4 18280142 18280438 -184047909 + AluY SINE Alu 1 296 -15 1499 199 28 71 chr4 18280438 18280616 -184047731 + MSTB1 LTR MaLR 192 376 -56 1803 159 0 32 chr4 18280620 18280935 -184047412 - AluJb SINE Alu -7 305 1 323 248 60 130 chr4 18280958 18281017 -184047330 + L1MC4a LINE L1 5604 5666 -2142 1450 119 29 65 chr4 18281017 18281294 -184047053 + L1MA8 LINE L1 6020 6286 -5 323 248 60 130 chr4 18281294 18281375 -184046972 + L1MC4a LINE L1 5666 5751 -2057 1532 253 137 18 chr4 18281375 18281866 -184046481 - MLT1H LTR MaLR 0 549 1 323 248 60 130 chr4 18281866 18282023 -184046324 + L1MC4a LINE L1 5751 5881 -1927 2497 108 114 8 chr4 18282114 18282501 -184045846 - MSTA LTR MaLR 0 428 1 242 343 0 0 chr4 18282572 18282639 -184045708 - L2 LINE L2 -559 2755 2689 640 300 21 34 chr4 18282664 18282901 -184045446 - MIR SINE MIR 0 262 29 1582 156 102 25 chr4 18283093 18283376 -184044971 + AluSx SINE Alu 1 305 -7 283 280 102 0 chr4 18283682 18283800 -184044547 + MIR SINE MIR 77 206 -56 2798 107 3 3 chr4 18283808 18284172 -184044175 - THE1B LTR MaLR 0 364 1 190 393 98 9 chr4 18284649 18284761 -184043586 + MIR SINE MIR 1 122 -140 1867 203 61 16 chr4 18284767 18285146 -184043201 + MSTD LTR MaLR 1 396 0 282 366 28 7 chr4 18285155 18285297 -184043050 - LTR16A LTR ERVL -18 432 288 2212 115 0 34 chr4 18285481 18285802 -184042545 + AluSx SINE Alu 2 311 -1 320 342 26 0 chr4 18286060 18286174 -184042173 + L2 LINE L2 3192 3308 -5 7024 73 28 2 chr4 18286281 18287566 -184040781 - L1PA11 LINE L1 0 6174 4885 2006 157 44 49 chr4 18287729 18288117 -184040230 + MLT1B LTR MaLR 5 390 0 1242 185 73 31 chr4 18288119 18288378 -184039969 + AluJo SINE Alu 1 270 -42 201 108 0 0 chr4 18288378 18288415 -184039932 + (CAGA)n Simple_repeat Simple_repeat 2 38 0 303 196 41 10 chr4 18288419 18288516 -184039831 + GA-rich Low_complexity Low_complexity 1 100 0 1859 94 90 0 chr4 18288519 18288775 -184039572 + AluSq SINE Alu 1 279 -34 901 54 0 23 chr4 18288778 18288908 -184039439 + (GAAA)n Simple_repeat Simple_repeat 2 128 0 402 182 17 45 chr4 18288916 18289092 -184039255 + GA-rich Low_complexity Low_complexity 2 172 0 2142 130 0 0 chr4 18289092 18289384 -184038963 + AluSc SINE Alu 1 292 -17 213 121 0 0 chr4 18289384 18289417 -184038930 + (AGGGGG)n Simple_repeat Simple_repeat 2 34 0 255 61 0 0 chr4 18289769 18289802 -184038545 + (CA)n Simple_repeat Simple_repeat 1 33 0 192 232 63 63 chr4 18290018 18290113 -184038234 - L2 LINE L2 -22 3291 3197 2549 73 3 6 chr4 18290924 18291238 -184037109 + AluSp SINE Alu 1 313 0 21 57 0 0 chr4 18291475 18291510 -184036837 + AT_rich Low_complexity Low_complexity 1 35 0 224 224 0 0 chr4 18291889 18291938 -184036409 + T-rich Low_complexity Low_complexity 2 50 0 290 171 0 13 chr4 18292615 18292691 -184035656 + (ATG)n Simple_repeat Simple_repeat 1 75 0 1140 189 166 2 chr4 18294465 18294765 -184033582 - MSTB LTR MaLR -3 423 1 2116 137 0 7 chr4 18295259 18295559 -184032788 + AluJb SINE Alu 1 298 -14 3061 148 46 15 chr4 18295677 18296218 -184032129 - L1MB3 LINE L1 -6 6177 5620 2100 204 25 45 chr4 18297049 18297564 -184030783 - MLT1D LTR MaLR 0 505 1 374 174 79 85 chr4 18297606 18297742 -184030605 - Charlie8 DNA MER1_type -2268 149 2 828 309 36 0 chr4 18297989 18298241 -184030106 - MIR SINE MIR 0 262 2 2024 94 11 7 chr4 18298577 18298852 -184029495 + AluSx SINE Alu 1 276 -36 7075 52 10 16 chr4 18298854 18299860 -184028487 + L1PA7 LINE L1 5155 6154 0 222 186 47 0 chr4 18300317 18300360 -184027987 + GA-rich Low_complexity Low_complexity 3 47 0 1452 201 3 31 chr4 18300480 18300768 -184027579 + AluJo SINE Alu 5 284 -28 401 101 56 11 chr4 18301262 18301351 -184026996 + GA-rich Low_complexity Low_complexity 3 95 0 347 237 11 11 chr4 18301633 18301726 -184026621 + MLT1I LTR MaLR 317 409 0 21 0 0 0 chr4 18301767 18301788 -184026559 + AT_rich Low_complexity Low_complexity 1 21 0 2154 128 7 0 chr4 18301857 18302154 -184026193 + AluSx SINE Alu 2 300 -12 328 296 82 76 chr4 18302711 18303015 -184025332 + MLT1K LTR MaLR 131 436 -152 258 269 154 19 chr4 18304954 18305058 -184023289 + MIR3 SINE MIR 43 160 -48 4099 218 72 47 chr4 18305967 18307677 -184020670 + L1MB3 LINE L1 4969 6635 452 3623 165 51 56 chr4 18307677 18308466 -184019881 - LTR1 LTR ERV1 0 785 1 186 43 0 0 chr4 18308471 18308494 -184019853 + (CATA)n Simple_repeat Simple_repeat 2 24 0 4099 218 72 47 chr4 18308494 18308892 -184019455 + L1MB3 LINE L1 5794 6181 -2 1803 184 119 19 chr4 18308892 18309311 -184019036 + LOR1b LTR ERV1 1 461 0 371 266 44 9 chr4 18309324 18309437 -184018910 + L1MC4 LINE L1 7240 7356 -686 2996 152 170 48 chr4 18309440 18310470 -184017877 - pTR5 LTR ERV1 0 2438 1143 4300 168 126 55 chr4 18310620 18311926 -184016421 - pTR5 LTR ERV1 -236 2018 36 1511 246 118 4 chr4 18311926 18312410 -184015937 + L1MC4 LINE L1 7355 7893 -149 29 28 0 0 chr4 18312455 18312491 -184015856 + AT_rich Low_complexity Low_complexity 1 36 0 24 0 0 0 chr4 18312700 18312724 -184015623 + AT_rich Low_complexity Low_complexity 1 24 0 582 292 88 76 chr4 18312836 18313281 -184015066 - L1MEd LINE L1 -4921 1198 749 456 280 40 30 chr4 18313937 18314159 -184014188 - MIR SINE MIR -28 234 14 378 250 143 25 chr4 18315540 18315736 -184012611 - MIR SINE MIR -15 247 29 296 231 164 10 chr4 18316464 18316568 -184011779 - MER117 DNA MER1_type -74 123 4 706 257 11 11 chr4 18316583 18316758 -184011589 - MER5B DNA MER1_type -3 175 1 220 283 66 38 chr4 18317205 18317311 -184011036 + MIR SINE MIR 98 206 -56 490 217 25 57 chr4 18317559 18317716 -184010631 - L1ME3 LINE L1 -96 6066 5915 200 191 0 0 chr4 18318220 18318262 -184010085 + MIR SINE MIR 81 122 -140 578 221 80 49 chr4 18318383 18318609 -184009738 + MIR SINE MIR 30 262 0 227 330 96 0 chr4 18318779 18318894 -184009453 + L2 LINE L2 3138 3263 -9 275 299 0 0 chr4 18318994 18319061 -184009286 - L2 LINE L2 -233 3039 2973 1811 141 113 3 chr4 18319295 18319622 -184008725 - MER47A DNA MER2_type -2 364 2 827 150 0 8 chr4 18319948 18320081 -184008266 + MER3 DNA MER1_type 1 132 -77 1892 148 137 6 chr4 18320115 18320459 -184007888 - MSTA LTR MaLR 0 428 40 1654 100 12 16 chr4 18320465 18320714 -184007633 + MSTA-int LTR MaLR 1333 1580 0 2047 131 141 24 chr4 18320714 18321060 -184007287 + MSTA LTR MaLR 1 398 -30 2142 106 3 7 chr4 18321060 18321371 -184006976 - AluSx SINE Alu 0 310 1 2047 131 141 24 chr4 18321371 18321406 -184006941 + MSTA LTR MaLR 398 428 0 1203 243 73 24 chr4 18321417 18321953 -184006394 - HsTC2 DNA Tc2 -122 1776 5 862 272 34 13 chr4 18322564 18322799 -184005548 + MIR SINE MIR 2 241 -21 1682 173 23 20 chr4 18324230 18324530 -184003817 - AluJo SINE Alu -11 301 1 2002 106 3 31 chr4 18326071 18326364 -184001983 + AluY SINE Alu 1 285 -26 2070 131 0 0 chr4 18326605 18326924 -184001423 - AluSx SINE Alu 0 319 1 413 285 23 23 chr4 18327760 18327890 -184000457 + MLT1K LTR MaLR 142 271 -317 1129 84 0 0 chr4 18327893 18328035 -184000312 - AluSg/x SINE Alu -12 300 159 6999 166 23 14 chr4 18328219 18328802 -183999545 + L1PB3 LINE L1 3819 4395 -1759 2359 94 0 0 chr4 18328802 18329090 -183999257 + AluSc SINE Alu 1 288 -21 6999 166 23 14 chr4 18329090 18330817 -183997530 + L1PB3 LINE L1 4395 6152 -2 231 133 0 0 chr4 18330923 18330968 -183997379 + (A)n Simple_repeat Simple_repeat 1 45 0 1204 162 26 13 chr4 18330990 18331224 -183997123 - MSTD LTR MaLR -159 237 1 257 262 244 18 chr4 18331882 18332046 -183996301 - L2 LINE L2 0 3313 3113 1802 141 61 7 chr4 18332428 18332725 -183995622 - LTR1 LTR ERV1 0 785 473 3644 119 38 144 chr4 18332727 18334152 -183994195 - LTR12 LTR ERV1 -23 1641 6 1137 248 52 16 chr4 18334152 18334489 -183993858 - LTR1 LTR ERV1 -293 533 189 * 1397 151 15 19 chr4 18334479 18334738 -183993609 - LTR1 LTR ERV1 -527 258 1 359 239 28 9 chr4 18335056 18335165 -183993182 + MER103 DNA DNA 36 146 -20 2374 91 0 3 chr4 18335165 18335463 -183992884 - AluSg SINE Alu -13 297 1 510 276 106 68 chr4 18335565 18335829 -183992518 + MLT1I LTR MaLR 121 394 -15 2243 197 108 86 chr4 18335830 18335911 -183992436 + Charlie1a DNA MER1_type 3 81 -2680 1911 135 0 55 chr4 18335911 18336223 -183992124 - AluSx SINE Alu -17 295 1 2243 197 108 86 chr4 18336223 18336309 -183992038 + Charlie1a DNA MER1_type 81 164 -2597 2473 148 33 7 chr4 18336309 18336729 -183991618 - MSTB1 LTR MaLR -1 431 1 2243 197 108 86 chr4 18336729 18336841 -183991506 + Charlie1a DNA MER1_type 164 272 -2489 1602 186 31 7 chr4 18336841 18337132 -183991215 + AluJo SINE Alu 2 299 -13 2243 197 108 86 chr4 18337132 18337602 -183990745 + Charlie1a DNA MER1_type 272 770 -685 2116 133 3 22 chr4 18337602 18337919 -183990428 + AluSx SINE Alu 1 311 -1 6075 208 9 22 chr4 18337925 18339313 -183989034 + L1 LINE L1 3957 5326 -820 1097 174 0 112 chr4 18339313 18339554 -183988793 + AluJb SINE Alu 80 293 -19 4214 113 26 6 chr4 18339555 18340199 -183988148 + L1PA16 LINE L1 5321 5977 -189 2311 125 16 21 chr4 18340199 18340576 -183987771 - THE1C LTR MaLR 0 375 1 1148 159 13 29 chr4 18340576 18340815 -183987532 - THE1C-int LTR MaLR 0 1580 1346 2203 136 39 8 chr4 18340922 18341283 -183987064 + L1PA16 LINE L1 5606 5977 -189 2355 119 16 24 chr4 18341283 18341661 -183986686 - THE1C LTR MaLR 0 375 1 10576 112 12 36 chr4 18341661 18343280 -183985067 - THE1C-int LTR MaLR 0 1580 1 1519 134 17 13 chr4 18343280 18343519 -183984828 - THE1C LTR MaLR 0 375 136 2297 96 0 0 chr4 18343553 18343867 -183984480 + AluSx SINE Alu 1 314 0 795 175 66 18 chr4 18344018 18344184 -183984163 - LTR41 LTR ERVL -599 174 1 1849 119 0 95 chr4 18344262 18344589 -183983758 - AluY SINE Alu -15 296 1 299 223 116 27 chr4 18345220 18345332 -183983015 + L2 LINE L2 3141 3262 -10 359 272 24 39 chr4 18345770 18345958 -183982389 - MLT1I LTR MaLR -3 406 266 299 208 26 26 chr4 18346036 18346113 -183982234 - MLT1J1 LTR MaLR -339 107 31 1287 189 6 102 chr4 18346158 18346492 -183981855 - AluJo SINE Alu -10 302 1 2464 141 18 2 chr4 18346943 18347340 -183981007 - MER57A LTR ERV1 0 403 1 21 0 0 0 chr4 18347354 18347375 -183980972 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr4 18347516 18347546 -183980801 + AT_rich Low_complexity Low_complexity 1 30 0 277 338 45 13 chr4 18347560 18347714 -183980633 - MIR SINE MIR -67 195 37 955 295 36 29 chr4 18348114 18348531 -183979816 + Tigger8 DNA MER2_type 245 664 -2 371 253 35 0 chr4 18348558 18348645 -183979702 + L2 LINE L2 3183 3272 0 1331 199 4 19 chr4 18348752 18349023 -183979324 + MLT2B1 LTR ERVL 1 267 -253 759 138 22 14 chr4 18349070 18349208 -183979139 - L1MA5A LINE L1 -3 6294 6156 953 204 144 82 chr4 18349281 18349781 -183978566 - LTR1B LTR ERV1 -237 589 59 4830 106 35 7 chr4 18349801 18350537 -183977810 - L1MA5A LINE L1 -130 6167 5411 2492 92 0 9 chr4 18350537 18350864 -183977483 + THE1B LTR MaLR 1 324 -40 1882 125 6 61 chr4 18350864 18351191 -183977156 + AluSp SINE Alu 1 309 -4 1272 100 24 0 chr4 18351191 18351361 -183976986 + AluSc SINE Alu 132 305 -4 479 96 55 0 chr4 18351361 18351434 -183976913 - L1MA5A LINE L1 -925 5221 5145 825 211 0 69 chr4 18351470 18351688 -183976659 + MLT2B1 LTR ERVL 318 520 0 283 304 24 48 chr4 18351698 18351866 -183976481 + L1MEd LINE L1 299 462 -5954 15507 118 40 9 chr4 18352057 18352988 -183975359 + Tigger1 DNA MER2_type 2 903 -1515 1754 47 0 0 chr4 18352988 18353202 -183975145 - L1PA6 LINE L1 0 6154 5941 15507 118 40 9 chr4 18353202 18354615 -183973732 + Tigger1 DNA MER2_type 903 2417 -1 21 0 0 0 chr4 18355429 18355450 -183972897 + AT_rich Low_complexity Low_complexity 1 21 0 369 209 65 86 chr4 18355521 18355650 -183972697 - L1ME3A LINE L1 0 6162 6038 450 220 88 55 chr4 18355789 18355971 -183972376 - MIR SINE MIR -73 189 2 1664 179 19 56 chr4 18356025 18356400 -183971947 + MLT1A1 LTR MaLR 1 361 -4 3621 163 20 99 chr4 18356400 18357284 -183971063 - LTR1B LTR ERV1 0 826 13 223 184 58 0 chr4 18357336 18357423 -183970924 + (TA)n Simple_repeat Simple_repeat 1 92 0 397 226 34 68 chr4 18357496 18357673 -183970674 + (TA)n Simple_repeat Simple_repeat 1 171 0 391 249 45 34 chr4 18357720 18357897 -183970450 + (TA)n Simple_repeat Simple_repeat 2 180 0 230 192 0 19 chr4 18357973 18358025 -183970322 + L1MEd LINE L1 2013 2063 -4363 324 194 62 0 chr4 18358040 18358184 -183970163 + (TA)n Simple_repeat Simple_repeat 1 153 0 23 0 0 0 chr4 18358191 18358214 -183970133 + AT_rich Low_complexity Low_complexity 1 23 0 458 216 60 0 chr4 18358224 18358358 -183969989 - MIR SINE MIR -49 213 72 4740 102 16 34 chr4 18358723 18359165 -183969182 - LTR8 LTR ERV1 0 691 265 1829 125 25 69 chr4 18359165 18359484 -183968863 - AluSx SINE Alu -7 305 1 4740 102 16 34 chr4 18359484 18359744 -183968603 - LTR8 LTR ERV1 -426 265 2 545 294 47 19 chr4 18359771 18359985 -183968362 - MIR SINE MIR -15 247 28 208 267 0 0 chr4 18361025 18361070 -183967277 + L2 LINE L2 3251 3295 -18 2419 103 0 0 chr4 18361095 18361397 -183966950 + AluSq SINE Alu 1 302 -11 209 148 0 111 chr4 18361530 18361584 -183966763 - L2 LINE L2 -1 3271 3224 279 146 125 0 chr4 18361620 18361668 -183966679 - MER103 DNA DNA -46 120 67 470 17 17 0 chr4 18361687 18361746 -183966601 + (TAGA)n Simple_repeat Simple_repeat 3 62 0 2433 150 49 28 chr4 18361886 18362359 -183965988 + MER67A LTR ERV1 1 483 -60 1288 213 23 11 chr4 18362359 18362622 -183965725 + Tigger7 DNA MER2_type 2 267 -2220 571 148 10 50 chr4 18362620 18362638 -183965709 + Tigger7 DNA MER2_type 2491 2508 -79 * 2372 88 59 34 chr4 18362638 18362992 -183965355 + THE1B LTR MaLR 1 363 -1 571 148 10 50 chr4 18362992 18363074 -183965273 + Tigger7 DNA MER2_type 2508 2587 0 388 154 0 0 chr4 18363074 18363137 -183965210 + MER67A LTR ERV1 481 543 0 1930 150 31 3 chr4 18363584 18363877 -183964470 + AluJo SINE Alu 1 301 -11 1855 115 100 0 chr4 18363885 18364154 -183964193 + AluSx SINE Alu 1 296 -16 252 0 0 0 chr4 18364200 18364228 -183964119 + (CA)n Simple_repeat Simple_repeat 1 28 0 1295 162 25 26 chr4 18364697 18365036 -183963311 + MLT1D LTR MaLR 12 395 -110 2197 119 0 16 chr4 18365036 18365346 -183963001 - AluSx SINE Alu -7 305 1 1295 162 25 26 chr4 18365346 18365457 -183962890 + MLT1D LTR MaLR 395 505 0 334 322 27 7 chr4 18366292 18366438 -183961909 + MIR SINE MIR 103 251 -11 576 101 0 0 chr4 18366673 18366752 -183961595 + MADE1 DNA Mariner 1 79 -1 315 0 0 0 chr4 18367045 18367080 -183961267 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 533 248 8 103 chr4 18367286 18367386 -183960961 + MIR SINE MIR 13 80 -182 2325 107 3 7 chr4 18367386 18367695 -183960652 + AluSx SINE Alu 1 308 -4 533 248 8 103 chr4 18367695 18367828 -183960519 + MIR SINE MIR 80 224 -38 2675 20 7 0 chr4 18367887 18368193 -183960154 - L1PA4 LINE L1 0 6155 5848 366 298 43 80 chr4 18368372 18368523 -183959824 - LTR16C LTR ERVL -5 486 331 549 115 0 0 chr4 18368523 18368601 -183959746 + MADE1 DNA Mariner 1 78 -2 366 298 43 80 chr4 18368601 18368798 -183959549 - LTR16C LTR ERVL -160 331 151 1261 150 68 13 chr4 18370122 18370356 -183957991 + MLT1F LTR MaLR 296 542 0 200 308 64 0 chr4 18370357 18370435 -183957912 + MER5A DNA MER1_type 78 160 -29 2649 42 0 7 chr4 18370955 18371261 -183957086 + AluY SINE Alu 1 304 -7 1961 163 10 0 chr4 18371348 18371648 -183956699 + AluJb SINE Alu 5 307 -5 365 264 157 0 chr4 18372273 18372432 -183955915 - MIR SINE MIR -10 252 69 189 256 0 85 chr4 18372415 18372497 -183955850 - L2 LINE L2 -16 3256 3182 * 1781 156 7 7 chr4 18372501 18372790 -183955557 + AluSx SINE Alu 1 289 -23 1560 163 97 0 chr4 18372883 18373169 -183955178 - AluJb SINE Alu 0 311 1 598 249 153 5 chr4 18373334 18373543 -183954804 + MIR SINE MIR 4 243 -19 378 286 168 30 chr4 18373743 18374113 -183954234 - L1ME LINE L1 -316 5805 5385 2369 91 13 0 chr4 18374317 18374625 -183953722 + AluSx SINE Alu 1 312 0 275 161 18 0 chr4 18374638 18374694 -183953653 + A-rich Low_complexity Low_complexity 4 60 0 874 257 122 27 chr4 18375439 18375913 -183952434 - LTR33A LTR ERVL -3 520 2 2767 70 3 17 chr4 18376735 18377093 -183951254 - THE1A LTR MaLR 0 355 3 1643 143 57 8 chr4 18377093 18377358 -183950989 - AluJb SINE Alu -34 278 1 270 261 122 17 chr4 18377420 18377535 -183950812 + MIR SINE MIR 40 166 -96 1205 155 73 0 chr4 18377591 18377925 -183950422 + L1MB8 LINE L1 5138 5489 -695 1574 207 18 18 chr4 18378117 18378451 -183949896 + L1MB8 LINE L1 5508 5841 -337 382 298 187 0 chr4 18378512 18378710 -183949637 - MIR SINE MIR 0 262 28 920 243 60 13 chr4 18379189 18379489 -183948858 + L2 LINE L2 1785 2098 -1216 716 193 94 12 chr4 18379545 18379716 -183948631 + LTR41 LTR ERVL 3 187 -586 309 223 54 27 chr4 18380003 18380115 -183948232 + LTR41 LTR ERVL 649 763 -10 1269 214 182 27 chr4 18380121 18380677 -183947670 + L2 LINE L2 2169 2810 -504 306 256 90 0 chr4 18380679 18380757 -183947590 + MER119 DNA MER1_type 3 87 -496 543 233 15 23 chr4 18380780 18380913 -183947434 + MER119 DNA MER1_type 451 582 -1 909 256 27 72 chr4 18380924 18381161 -183947186 + L2 LINE L2 2824 3027 -286 1345 225 48 61 chr4 18381161 18381556 -183946791 - MLT1B LTR MaLR 0 390 1 909 256 27 72 chr4 18381556 18381830 -183946517 + L2 LINE L2 3027 3312 -1 29 0 0 0 chr4 18381978 18382007 -183946340 + AT_rich Low_complexity Low_complexity 1 29 0 2291 82 0 7 chr4 18382133 18382424 -183945923 + AluSc SINE Alu 1 289 -20 292 325 70 0 chr4 18382636 18382750 -183945597 + MIR3 SINE MIR 45 166 -42 2595 168 40 72 chr4 18382772 18382793 -183945554 + L1MB5 LINE L1 5588 5608 -566 2025 121 0 66 chr4 18382793 18383125 -183945222 + AluSx SINE Alu 1 310 -2 2595 168 40 72 chr4 18383125 18383442 -183944905 + L1MB5 LINE L1 5608 5934 -240 1775 161 18 3 chr4 18383442 18383727 -183944620 + AluJo SINE Alu 1 289 -23 2595 168 40 72 chr4 18383727 18383966 -183944381 + L1MB5 LINE L1 5934 6148 -26 2557 60 0 7 chr4 18383966 18384267 -183944080 + AluY SINE Alu 1 299 -12 2595 168 40 72 chr4 18384267 18384294 -183944053 + L1MB5 LINE L1 6148 6174 0 388 224 131 0 chr4 18384335 18384442 -183943905 + MIR3 SINE MIR 39 159 -49 1984 121 36 0 chr4 18385537 18385840 -183942507 + AluSx SINE Alu 1 313 0 744 203 0 0 chr4 18385850 18385983 -183942364 + FLAM_C SINE Alu 1 133 0 265 250 14 0 chr4 18386054 18386126 -183942221 + HAL1b LINE L1 1248 1320 -28 1935 136 14 7 chr4 18386150 18386444 -183941903 + AluJb SINE Alu 1 296 -16 645 96 0 0 chr4 18387164 18387258 -183941089 - L1PA6 LINE L1 -1 6153 6060 560 270 104 14 chr4 18387690 18387912 -183940435 + MIR SINE MIR 8 249 -13 251 278 44 0 chr4 18388093 18388183 -183940164 + L2 LINE L2 3202 3295 -18 320 284 154 18 chr4 18388445 18388614 -183939733 - MIR SINE MIR -15 247 56 255 350 32 0 chr4 18389476 18389633 -183938714 - L3 LINE CR1 -1 1576 1415 206 217 33 17 chr4 18389794 18389854 -183938493 + GA-rich Low_complexity Low_complexity 2 62 0 1593 215 73 0 chr4 18389915 18390255 -183938092 + MLT1A1 LTR MaLR 1 365 0 350 285 21 24 chr4 18391126 18391267 -183937080 + MIR SINE MIR 22 169 -39 1411 175 36 12 chr4 18391330 18391582 -183936765 + AluJo SINE Alu 1 258 -54 1286 255 64 9 chr4 18391584 18392074 -183936273 - MER21B LTR ERV1 -199 664 98 425 260 58 23 chr4 18392200 18392373 -183935974 + MIR SINE MIR 31 209 -53 307 229 0 0 chr4 18393804 18393865 -183934482 + L2 LINE L2 3193 3253 -60 1958 140 0 7 chr4 18393896 18394189 -183934158 + AluJb SINE Alu 1 291 -21 261 0 0 0 chr4 18394192 18394221 -183934126 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 2263 107 13 0 chr4 18394333 18394642 -183933705 + AluSp SINE Alu 1 313 0 760 149 16 0 chr4 18394807 18394928 -183933419 - AluJb SINE Alu -12 300 178 2069 103 31 3 chr4 18394928 18395218 -183933129 - AluSx SINE Alu -14 298 1 21 0 0 0 chr4 18395452 18395473 -183932874 + AT_rich Low_complexity Low_complexity 1 21 0 268 320 40 0 chr4 18395665 18395765 -183932582 + MIR SINE MIR 66 169 -93 289 273 10 20 chr4 18395845 18395944 -183932403 - L1MA10 LINE L1 0 6334 6237 476 225 73 33 chr4 18397207 18397358 -183930989 - MIR SINE MIR -94 168 12 1734 169 35 0 chr4 18397699 18397983 -183930364 + AluJo SINE Alu 1 294 -18 1956 82 112 4 chr4 18398046 18398315 -183930032 - AluY SINE Alu -13 298 1 2034 151 74 3 chr4 18398437 18398801 -183929546 + MLT1B LTR MaLR 1 390 0 288 263 171 10 chr4 18398862 18399015 -183929332 + MIR SINE MIR 51 224 -38 218 267 137 56 chr4 18399055 18399216 -183929131 - MIR SINE MIR -12 250 77 886 104 15 22 chr4 18399249 18399383 -183928964 - FLAM_C SINE Alu -10 133 1 928 248 75 119 chr4 18400764 18401719 -183926628 + L1MC4 LINE L1 7130 8042 0 2206 100 3 3 chr4 18401730 18402020 -183926327 + AluSx SINE Alu 1 290 -22 213 132 0 0 chr4 18402020 18402058 -183926289 + (GGGGA)n Simple_repeat Simple_repeat 1 38 0 302 276 102 0 chr4 18402824 18402922 -183925425 - L1ME4a LINE L1 -49 6072 5965 2291 101 7 0 chr4 18403302 18403608 -183924739 - AluSq SINE Alu -5 308 1 824 136 0 0 chr4 18403631 18403749 -183924598 + FLAM_C SINE Alu 1 118 -15 1924 167 0 3 chr4 18404180 18404492 -183923855 - AluJb SINE Alu -1 311 1 647 302 13 4 chr4 18404540 18404765 -183923582 + MIR SINE MIR 2 228 -34 303 230 87 40 chr4 18404985 18405111 -183923236 + L1ME4a LINE L1 5938 6069 -52 547 220 8 0 chr4 18405470 18405588 -183922759 + FLAM_A SINE Alu 1 119 -14 2467 91 0 3 chr4 18405654 18405963 -183922384 - AluSc SINE Alu -1 308 1 534 236 153 51 chr4 18406172 18406216 -183922131 + L1ME4a LINE L1 5626 5664 -457 1873 164 7 7 chr4 18406216 18406509 -183921838 + AluSx SINE Alu 1 293 -19 534 236 153 51 chr4 18406509 18406914 -183921433 + L1ME4a LINE L1 5664 6121 0 2263 110 0 3 chr4 18406938 18407246 -183921101 + AluSg SINE Alu 1 307 -3 1680 163 57 20 chr4 18407506 18407807 -183920540 + AluJo SINE Alu 1 312 0 1419 206 57 0 chr4 18407952 18408253 -183920094 - MER58B DNA MER1_type 0 341 24 192 154 31 138 chr4 18408271 18408336 -183920011 + MIR SINE MIR 16 73 -135 784 108 47 0 chr4 18409002 18409131 -183919216 + L1PB4 LINE L1 6015 6149 -7 267 338 159 5 chr4 18409481 18409682 -183918665 - MIR SINE MIR -2 260 29 25 0 0 0 chr4 18410165 18410190 -183918157 + GC_rich Low_complexity Low_complexity 1 25 0 25 31 0 0 chr4 18410208 18410240 -183918107 + GC_rich Low_complexity Low_complexity 1 32 0 273 132 0 19 chr4 18410617 18410670 -183917677 - L1MA4 LINE L1 -226 6074 6023 838 243 19 9 chr4 18410769 18410983 -183917364 - MER20 DNA MER1_type 0 219 4 292 246 305 21 chr4 18411227 18411414 -183916933 - MIR SINE MIR -9 253 14 264 169 51 0 chr4 18411606 18411665 -183916682 - MIR SINE MIR -6 256 195 1031 176 64 21 chr4 18411914 18412102 -183916245 - AluJo SINE Alu -30 282 87 653 294 20 0 chr4 18413853 18414050 -183914297 - MIR SINE MIR -16 246 46 204 365 0 21 chr4 18414174 18414270 -183914077 + MIR SINE MIR 24 117 -145 246 256 117 88 chr4 18414806 18414896 -183913451 + L1MC4 LINE L1 7613 7710 -332 2033 202 116 19 chr4 18414896 18415481 -183912866 - LTR48B LTR ERV1 -2 642 1 246 256 117 88 chr4 18415481 18415527 -183912820 + L1MC4 LINE L1 7710 7753 -289 2428 103 0 0 chr4 18416540 18416851 -183911496 + AluSq SINE Alu 1 311 -2 216 152 22 22 chr4 18416973 18417019 -183911328 - MIR SINE MIR -110 152 107 335 221 0 14 chr4 18417496 18417580 -183910767 + MIR SINE MIR 67 149 -59 649 168 17 8 chr4 18417950 18418069 -183910278 - FLAM_C SINE Alu -13 120 1 22 0 0 0 chr4 18418089 18418111 -183910236 + AT_rich Low_complexity Low_complexity 1 22 0 310 239 82 60 chr4 18418194 18418318 -183910029 - HAL1 LINE L1 -203 2304 2181 501 274 164 34 chr4 18418318 18418701 -183909646 - L1MC4a LINE L1 -1927 5881 2117 1751 153 56 3 chr4 18418812 18419099 -183909248 + AluSx SINE Alu 1 302 -10 2712 164 39 2 chr4 18419619 18420076 -183908271 - MER101 LTR ERV1 0 474 1 295 206 16 0 chr4 18420282 18420345 -183908002 - MIR SINE MIR -109 153 90 1944 136 4 4 chr4 18421264 18421544 -183906803 - AluJb SINE Alu 0 312 33 555 292 87 9 chr4 18421988 18422207 -183906140 - MIR SINE MIR -13 249 14 288 0 0 0 chr4 18422266 18422298 -183906049 + (TG)n Simple_repeat Simple_repeat 1 32 0 1136 147 4 101 chr4 18422787 18423025 -183905322 + AluJb SINE Alu 87 301 -11 522 281 30 0 chr4 18423132 18423299 -183905048 + L1ME LINE L1 5611 5782 -339 2066 118 0 45 chr4 18423415 18423728 -183904619 + AluJb SINE Alu 1 299 -13 24 0 0 0 chr4 18423995 18424019 -183904328 + AT_rich Low_complexity Low_complexity 1 24 0 198 143 0 0 chr4 18424025 18424060 -183904287 + (GA)n Simple_repeat Simple_repeat 2 36 0 2235 117 0 0 chr4 18424339 18424639 -183903708 + AluSx SINE Alu 1 300 -12 449 211 31 77 chr4 18425341 18425493 -183902854 + MIR SINE MIR 46 193 -63 304 149 90 0 chr4 18425716 18425783 -183902564 - MIR SINE MIR -3 259 187 310 26 0 0 chr4 18425789 18425827 -183902520 - MADE1 DNA Mariner -42 38 1 243 203 0 101 chr4 18425909 18425988 -183902359 - L2 LINE L2 -245 3027 2957 2383 100 0 0 chr4 18426035 18426334 -183902013 + AluSg SINE Alu 1 299 -11 1800 190 37 32 chr4 18426447 18426813 -183901534 + MLT2D LTR ERVL 5 375 -39 372 22 0 0 chr4 18426813 18426858 -183901489 + (CA)n Simple_repeat Simple_repeat 2 46 0 1800 190 37 32 chr4 18426858 18426897 -183901450 + MLT2D LTR ERVL 375 412 -2 551 204 0 0 chr4 18426998 18427101 -183901246 + U13 snRNA snRNA 1 103 -1 2118 124 14 0 chr4 18427126 18427416 -183900931 - AluSq SINE Alu -19 294 1 292 300 121 49 chr4 18427610 18427833 -183900514 + L3 LINE CR1 684 922 -655 242 239 70 0 chr4 18427856 18427927 -183900420 - L2 LINE L2 -45 3268 3193 754 137 43 58 chr4 18427997 18428136 -183900211 + FLAM_C SINE Alu 4 140 -3 2303 96 10 0 chr4 18428215 18428508 -183899839 + AluSq SINE Alu 1 296 -17 2358 103 0 3 chr4 18428580 18428882 -183899465 - AluSx SINE Alu -11 301 1 3651 172 49 29 chr4 18429241 18429939 -183898408 + MER21B LTR ERV1 135 846 -17 275 308 175 0 chr4 18429970 18430113 -183898234 - MIR SINE MIR -30 232 65 2248 89 3 3 chr4 18430659 18430951 -183897396 + AluSq SINE Alu 2 293 -20 597 203 0 8 chr4 18431285 18431403 -183896944 - MLT1D LTR MaLR 0 505 389 829 198 46 9 chr4 18431403 18431706 -183896641 + MSTD LTR MaLR 1 396 0 1550 195 47 7 chr4 18431732 18432030 -183896317 + AluJo SINE Alu 1 310 -2 918 241 91 13 chr4 18432044 18432276 -183896071 - MLT1D LTR MaLR -125 380 131 2203 104 7 3 chr4 18432450 18432749 -183895598 + AluSc SINE Alu 1 300 -9 1956 134 0 31 chr4 18432936 18433295 -183895052 - AluSx SINE Alu 0 350 1 649 82 0 0 chr4 18433678 18433763 -183894584 - MER101 LTR ERV1 -2 472 388 267 118 0 0 chr4 18433859 18433893 -183894454 - MER101 LTR ERV1 -56 418 385 2999 113 14 49 chr4 18433894 18434383 -183893964 - MER101 LTR ERV1 0 474 3 190 350 0 0 chr4 18434417 18434497 -183893850 + MIR3 SINE MIR 122 201 -7 1949 106 84 0 chr4 18434999 18435273 -183893074 + AluSg SINE Alu 1 297 -13 823 81 0 57 chr4 18435423 18435546 -183892801 + FLAM_C SINE Alu 24 139 -4 2190 92 0 54 chr4 18436432 18436748 -183891599 + AluSg SINE Alu 1 299 -11 254 221 62 97 chr4 18437120 18437265 -183891082 + L2 LINE L2 3078 3217 -96 2388 84 14 0 chr4 18437266 18437563 -183890784 - AluSp SINE Alu -12 301 1 220 216 0 20 chr4 18437693 18437744 -183890603 + (TATG)n Simple_repeat Simple_repeat 2 51 0 3219 123 8 0 chr4 18437746 18438227 -183890120 - L1MC1 LINE L1 -421 5912 5428 464 181 0 0 chr4 18438533 18438616 -183889731 - L1MC/D LINE L1 -647 5686 5604 1700 143 11 29 chr4 18438639 18438919 -183889428 - MER1B DNA MER1_type -64 275 1 192 244 0 115 chr4 18439004 18439082 -183889265 - MIR SINE MIR -21 241 173 467 236 9 0 chr4 18439092 18439202 -183889145 - L1MC4 LINE L1 0 8042 7932 925 154 0 0 chr4 18439202 18439338 -183889009 + AluJo SINE Alu 1 136 -176 31 0 0 0 chr4 18439338 18439369 -183888978 + AT_rich Low_complexity Low_complexity 1 31 0 3767 219 69 31 chr4 18439428 18439828 -183888519 - L1MC4 LINE L1 -122 7920 7536 2587 43 3 0 chr4 18439828 18440129 -183888218 - AluY SINE Alu -9 302 1 3767 219 69 31 chr4 18440129 18440776 -183887571 - L1MC4 LINE L1 -506 7536 6834 1688 165 20 37 chr4 18441434 18441786 -183886561 - L1MB8 LINE L1 -1 6177 5832 2365 73 0 30 chr4 18441799 18442102 -183886245 - AluY SINE Alu -17 294 1 375 252 52 17 chr4 18442728 18442843 -183885504 - L1MC5 LINE L1 -60 7901 7783 244 256 26 26 chr4 18442942 18443020 -183885327 - L2 LINE L2 -9 3263 3186 2042 93 54 0 chr4 18443171 18443450 -183884897 + AluSp SINE Alu 1 294 -19 383 134 75 0 chr4 18444606 18444673 -183883674 + MLT1B LTR MaLR 19 90 -300 1057 99 13 0 chr4 18444674 18444826 -183883521 - AluSg/x SINE Alu -15 295 142 1139 194 12 70 chr4 18444838 18445028 -183883319 + MSTB LTR MaLR 91 290 -136 2031 104 4 4 chr4 18445028 18445308 -183883039 + AluSc SINE Alu 1 280 -29 221 0 35 0 chr4 18445311 18445340 -183883007 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1139 194 12 70 chr4 18445340 18445383 -183882964 + MSTB LTR MaLR 292 314 -112 2003 154 0 0 chr4 18445383 18445695 -183882652 - AluSx SINE Alu 0 312 1 1139 194 12 70 chr4 18445695 18445714 -183882633 + MSTB LTR MaLR 314 333 -93 604 142 7 20 chr4 18445727 18445837 -183882510 + MSTB1 LTR MaLR 249 432 0 1000 107 94 0 chr4 18445837 18445986 -183882361 + MLT1B LTR MaLR 228 390 0 247 235 15 44 chr4 18446163 18446231 -183882116 - L2 LINE L2 -990 2324 2259 229 154 0 0 chr4 18446283 18446322 -183882025 + MIR SINE MIR 110 148 -114 1610 146 0 0 chr4 18446324 18446577 -183881770 + AluSx SINE Alu 1 253 -59 43 0 0 0 chr4 18446694 18446737 -183881610 + AT_rich Low_complexity Low_complexity 1 43 0 198 258 0 76 chr4 18447383 18447449 -183880898 + MIR3 SINE MIR 148 208 0 2400 41 7 0 chr4 18447585 18447877 -183880470 + AluY SINE Alu 1 294 -17 1922 151 3 0 chr4 18448057 18448368 -183879979 - AluJb SINE Alu 0 312 1 232 241 0 19 chr4 18448616 18448670 -183879677 + MER5B DNA MER1_type 1 53 -125 2198 106 0 0 chr4 18449188 18449524 -183878823 + AluSc SINE Alu 3 338 0 502 145 0 24 chr4 18449617 18449700 -183878647 - AluJo SINE Alu -16 296 216 961 170 0 6 chr4 18449701 18449866 -183878481 - AluJo SINE Alu -148 164 1 2159 125 0 0 chr4 18450897 18451209 -183877138 + AluSx SINE Alu 1 312 0 1520 178 22 47 chr4 18451232 18451553 -183876794 + L1MD2 LINE L1 5595 5907 -452 843 104 0 0 chr4 18451553 18451668 -183876679 + AluSg/x SINE Alu 163 277 -35 953 231 64 8 chr4 18451671 18451905 -183876442 + L1MD2 LINE L1 5896 6142 -217 389 233 33 67 chr4 18451910 18452033 -183876314 + L1MD2 LINE L1 6199 6325 -34 216 97 0 0 chr4 18452033 18452064 -183876283 + (TA)n Simple_repeat Simple_repeat 1 31 0 2234 73 0 54 chr4 18452064 18452380 -183875967 - AluSg SINE Alu -11 299 1 389 233 33 67 chr4 18452380 18452405 -183875942 + L1MD2 LINE L1 6323 6343 -16 1928 142 13 10 chr4 18452459 18452770 -183875577 + AluSx SINE Alu 1 312 0 810 293 81 66 chr4 18452802 18453664 -183874683 + L2 LINE L2 2213 3271 -1 442 243 29 19 chr4 18453787 18453890 -183874457 + L2 LINE L2 3210 3313 0 1074 272 35 80 chr4 18454111 18454532 -183873815 + HAL1 LINE L1 427 813 -1694 814 133 16 85 chr4 18454532 18454720 -183873627 - L1PA16 LINE L1 0 6166 5992 1074 272 35 80 chr4 18454720 18454920 -183873427 + HAL1 LINE L1 813 1020 -1487 1961 123 3 10 chr4 18455035 18455337 -183873010 + AluSx SINE Alu 13 312 0 1630 192 0 19 chr4 18455447 18455755 -183872592 - AluJo SINE Alu -10 302 1 1073 127 66 28 chr4 18456169 18456381 -183871966 + L1PA15 LINE L1 5935 6154 -11 294 83 0 0 chr4 18457094 18457130 -183871217 - U2 snRNA snRNA -152 36 1 300 321 36 9 chr4 18457401 18457513 -183870834 + MIR SINE MIR 8 122 -140 576 324 25 12 chr4 18457523 18457764 -183870583 - MLT1J LTR MaLR -10 501 258 728 263 132 18 chr4 18457887 18458168 -183870179 - L2 LINE L2 -2 3311 2999 818 206 0 7 chr4 18458265 18458411 -183869936 - FRAM SINE Alu -31 145 1 290 142 113 142 chr4 18458483 18458589 -183869758 + MLT1J LTR MaLR 155 257 -254 2023 118 0 7 chr4 18458713 18459002 -183869345 + AluSx SINE Alu 13 299 -13 1976 123 7 0 chr4 18459048 18459348 -183868999 + AluSp SINE Alu 1 302 -11 760 239 0 0 chr4 18460077 18460236 -183868111 + MER70-int LTR ERVL 421 579 -4444 * 5102 238 41 21 chr4 18460232 18461629 -183866718 + MER70-int LTR ERVL 1808 3879 -1651 1060 122 0 0 chr4 18461632 18461780 -183866567 - AluSp SINE Alu -19 294 147 3695 211 27 23 chr4 18461782 18462101 -183866246 + MER70-int LTR ERVL 2842 3158 -1865 273 29 0 0 chr4 18462101 18462135 -183866212 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 3695 211 27 23 chr4 18462135 18462603 -183865744 + MER70-int LTR ERVL 3158 3632 -1391 2102 116 0 3 chr4 18462874 18463177 -183865170 - AluSx SINE Alu -6 306 5 503 277 57 50 chr4 18464154 18464537 -183863810 + MER70-int LTR ERVL 4471 4856 -167 2791 129 21 46 chr4 18465194 18465673 -183862674 - LTR24 LTR ERV1 0 467 1 314 291 58 0 chr4 18465699 18465785 -183862562 + MLT1J LTR MaLR 323 413 -98 2481 55 3 0 chr4 18465823 18466131 -183862216 - AluY SINE Alu -2 309 1 2046 109 10 3 chr4 18466131 18466433 -183861914 - AluSx SINE Alu -8 304 1 1560 154 0 29 chr4 18466521 18466801 -183861546 + AluJb SINE Alu 1 272 -40 1294 92 0 6 chr4 18466801 18466974 -183861373 - AluSp SINE Alu -141 172 1 448 126 57 151 chr4 18467299 18467362 -183860985 - LTR37A LTR ERV1 0 426 359 1812 142 10 0 chr4 18467362 18467639 -183860708 + AluSx SINE Alu 3 285 -27 198 0 0 0 chr4 18467639 18467661 -183860686 + (CA)n Simple_repeat Simple_repeat 1 22 0 1812 142 10 0 chr4 18467661 18467678 -183860669 + AluSx SINE Alu 285 300 -12 448 126 57 151 chr4 18467678 18467773 -183860574 - LTR37A LTR ERV1 -67 359 283 841 135 0 43 chr4 18467785 18467887 -183860460 + AluJ SINE Alu 2 98 -214 3932 130 29 8 chr4 18467887 18468518 -183859829 - LTR9B LTR ERV1 0 644 1 841 135 0 43 chr4 18468518 18468556 -183859791 + AluJ SINE Alu 98 136 -176 1017 167 6 0 chr4 18468556 18468718 -183859629 + AluJ SINE Alu 137 299 -3 678 191 57 127 chr4 18468720 18468965 -183859382 - LTR37A LTR ERV1 -148 278 56 1578 169 43 0 chr4 18468965 18469087 -183859260 + AluJo SINE Alu 1 116 -196 201 74 0 0 chr4 18469087 18469114 -183859233 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1578 169 43 0 chr4 18469114 18469269 -183859078 + AluJo SINE Alu 116 290 -22 678 191 57 127 chr4 18469269 18469322 -183859025 - LTR37A LTR ERV1 -370 56 1 189 160 43 160 chr4 18469721 18469815 -183858532 - L2 LINE L2 -4 3268 3186 279 137 11 158 chr4 18469854 18469900 -183858447 + LTR8A LTR ERV1 1 28 -699 2061 97 3 16 chr4 18469900 18470211 -183858136 + AluSc SINE Alu 1 307 -2 279 137 11 158 chr4 18470211 18470259 -183858088 + LTR8A LTR ERV1 28 81 -646 198 0 0 0 chr4 18470279 18470301 -183858046 + (CTG)n Simple_repeat Simple_repeat 2 23 0 2131 105 0 16 chr4 18470301 18470479 -183857868 - AluSx SINE Alu -2 310 138 2317 71 0 16 chr4 18470479 18470789 -183857558 - AluY SINE Alu -5 306 2 2131 105 0 16 chr4 18470789 18470925 -183857422 - AluSx SINE Alu -174 138 1 1252 194 14 9 chr4 18470925 18471142 -183857205 + LTR8 LTR ERV1 474 691 0 190 277 64 21 chr4 18471180 18471274 -183857073 - L2 LINE L2 -181 3091 2994 1349 262 51 41 chr4 18471384 18471764 -183856583 + MER34 LTR ERV1 26 401 -141 261 0 0 0 chr4 18471764 18471793 -183856554 + (TG)n Simple_repeat Simple_repeat 2 30 0 1349 262 51 41 chr4 18471793 18471822 -183856525 + MER34 LTR ERV1 401 428 -114 1859 145 0 7 chr4 18471822 18472112 -183856235 - AluJb SINE Alu -24 288 1 1349 262 51 41 chr4 18472112 18472213 -183856134 + MER34 LTR ERV1 428 542 0 1447 178 31 21 chr4 18472997 18473283 -183855064 - AluJb SINE Alu -23 289 1 2038 114 10 0 chr4 18473390 18473689 -183854658 + AluSx SINE Alu 1 302 -10 24 0 0 0 chr4 18473721 18473745 -183854602 + AT_rich Low_complexity Low_complexity 1 24 0 3171 116 38 41 chr4 18473769 18474302 -183854045 + LTR26B LTR ERV1 1 531 0 1912 113 0 38 chr4 18474374 18474508 -183853839 + AluSg SINE Alu 1 139 -171 2118 98 0 22 chr4 18474508 18474825 -183853522 + AluSq SINE Alu 2 311 -2 1912 113 0 38 chr4 18474825 18475008 -183853339 + AluSg SINE Alu 139 306 -4 200 339 0 0 chr4 18475246 18475311 -183853036 + (CG)n Simple_repeat Simple_repeat 1 65 0 238 279 85 47 chr4 18476634 18476763 -183851584 + MIR SINE MIR 113 246 -16 2102 213 29 42 chr4 18477003 18477552 -183850795 - MER34 LTR ERV1 0 542 1 1593 141 3 71 chr4 18478055 18478381 -183849966 - AluSx SINE Alu -8 304 1 818 134 0 24 chr4 18479534 18479661 -183848686 + FLAM_C SINE Alu 17 140 -3 221 135 27 0 chr4 18481376 18481413 -183846934 - MIR SINE MIR -58 150 113 474 283 38 25 chr4 18482225 18482384 -183845963 + MIR SINE MIR 13 173 -89 393 348 28 0 chr4 18483214 18483355 -183844992 - MIR3 SINE MIR -3 205 61 1022 145 0 40 chr4 18483424 18483497 -183844850 - L1MB8 LINE L1 -3 6175 6101 1434 169 74 14 chr4 18483497 18483781 -183844566 - AluJo SINE Alu -1 301 1 1022 145 0 40 chr4 18483781 18483907 -183844440 - L1MB8 LINE L1 -77 6101 5984 444 140 33 0 chr4 18483928 18484028 -183844319 - L1MB8 LINE L1 -494 5680 5573 563 227 25 0 chr4 18484743 18484862 -183843485 + FLAM_A SINE Alu 5 126 -7 2018 125 0 0 chr4 18484885 18485174 -183843173 + AluSx SINE Alu 1 289 -23 1151 196 4 27 chr4 18486094 18486354 -183841993 - AluJb SINE Alu -16 296 43 810 148 16 0 chr4 18486383 18486505 -183841842 - FLAM_C SINE Alu -18 125 2 323 265 81 33 chr4 18486595 18486757 -183841590 - MIR SINE MIR -39 223 51 2102 139 0 0 chr4 18487112 18487422 -183840925 - AluSx SINE Alu -2 310 1 500 312 127 0 chr4 18487501 18487674 -183840673 - MIR SINE MIR -21 241 47 690 203 8 0 chr4 18487701 18487819 -183840528 - FLAM_C SINE Alu -23 120 2 210 295 62 27 chr4 18488393 18488505 -183839842 - L3 LINE CR1 -156 1421 1306 356 172 17 133 chr4 18488505 18488631 -183839716 - Charlie7 DNA MER1_type 0 2612 2512 2240 77 3 0 chr4 18488631 18488931 -183839416 - AluY SINE Alu -10 301 1 356 172 17 133 chr4 18488931 18488984 -183839363 - Charlie7 DNA MER1_type -100 2512 2454 951 118 0 15 chr4 18488995 18489130 -183839217 - AluJo/FLAM SINE Alu -169 133 1 1177 108 0 44 chr4 18489130 18489324 -183839023 - AluSg/x SINE Alu -8 304 118 * 1213 112 0 11 chr4 18489323 18489502 -183838845 - AluSg SINE Alu -133 177 1 407 324 53 27 chr4 18489639 18489960 -183838387 - L2 LINE L2 -219 3053 2721 360 171 71 0 chr4 18489961 18490031 -183838316 - L1ME1 LINE L1 -10 6156 6082 718 210 0 0 chr4 18490039 18490163 -183838184 + FLAM_A SINE Alu 4 127 -6 2832 217 73 31 chr4 18490208 18490875 -183837472 - L1ME1 LINE L1 -72 6094 5387 1964 106 39 0 chr4 18490875 18491159 -183837188 - AluSx SINE Alu -17 295 1 2832 217 73 31 chr4 18491159 18491288 -183837059 - L1ME1 LINE L1 -779 5387 5265 1210 217 99 56 chr4 18491282 18491671 -183836676 - L1ME1 LINE L1 -1094 5052 4640 * 2099 120 0 3 chr4 18491671 18491972 -183836375 - AluJb SINE Alu -10 302 3 1210 217 99 56 chr4 18491972 18492025 -183836322 - L1ME1 LINE L1 -1506 4640 4591 217 309 72 22 chr4 18492088 18492227 -183836120 - L2 LINE L2 -667 2647 2502 717 158 15 15 chr4 18493078 18493211 -183835136 + FLAM_C SINE Alu 1 133 0 1330 42 6 6 chr4 18493229 18493395 -183834952 - AluY SINE Alu -141 170 5 753 251 191 39 chr4 18494220 18494393 -183833954 - L1MC4 LINE L1 -140 7902 7757 2345 85 3 0 chr4 18494393 18494700 -183833647 - AluSp SINE Alu -5 308 1 753 251 191 39 chr4 18494700 18495009 -183833338 - L1MC4 LINE L1 -285 7757 7347 1500 196 27 3 chr4 18495334 18495630 -183832717 - AluJb SINE Alu -9 303 1 596 161 0 27 chr4 18496225 18496337 -183832010 - AluJb SINE Alu -178 134 26 1855 112 58 4 chr4 18496823 18497099 -183831248 - AluSx SINE Alu -21 291 1 826 113 14 56 chr4 18497099 18497241 -183831106 - AluSq/x SINE Alu -176 136 1 2048 111 4 0 chr4 18497318 18497621 -183830726 + AluSc SINE Alu 1 304 0 278 341 33 0 chr4 18497881 18497972 -183830375 + MIR SINE MIR 31 124 -138 362 289 67 30 chr4 18498914 18499049 -183829298 + MIR SINE MIR 113 252 -10 1708 127 11 4 chr4 18499631 18499891 -183828456 + MER2 DNA MER2_type 4 265 -80 340 128 0 0 chr4 18499967 18500014 -183828333 + MER2 DNA MER2_type 298 344 -1 214 257 159 35 chr4 18500274 18500387 -183827960 - L2 LINE L2 -9 3263 3137 2139 89 28 0 chr4 18500752 18501043 -183827304 - AluSx SINE Alu -13 299 1 2091 90 3 7 chr4 18501087 18501375 -183826972 + AluY SINE Alu 1 287 -24 1624 153 16 66 chr4 18501437 18501567 -183826780 + AluJo SINE Alu 1 136 -176 2177 75 7 36 chr4 18501567 18501875 -183826472 - AluSp SINE Alu -14 299 1 1995 86 76 3 chr4 18501876 18502167 -183826180 - AluSx SINE Alu 0 312 1 1624 153 16 66 chr4 18502167 18502354 -183825993 + AluJo SINE Alu 135 304 -8 279 0 0 0 chr4 18503180 18503211 -183825136 + (CA)n Simple_repeat Simple_repeat 1 31 0 239 196 0 0 chr4 18503560 18503606 -183824741 - L2 LINE L2 0 3313 3268 518 156 90 8 chr4 18503931 18504053 -183824294 - HAL1 LINE L1 -110 2397 2266 182 365 19 0 chr4 18504054 18504106 -183824241 + L2 LINE L2 3112 3164 -108 214 196 43 0 chr4 18504159 18504205 -183824142 + (TGAG)n Simple_repeat Simple_repeat 3 50 0 2017 83 7 10 chr4 18504385 18504699 -183823648 - AluSc SINE Alu 0 309 1 855 212 80 14 chr4 18506263 18506475 -183821872 - MIR SINE MIR 0 262 37 1132 156 12 131 chr4 18506569 18506890 -183821457 + AluJo SINE Alu 1 283 -19 2228 81 0 10 chr4 18506890 18507187 -183821160 + AluSg SINE Alu 1 294 -16 1461 152 13 56 chr4 18507212 18507337 -183821010 + AluJo SINE Alu 9 138 -174 2054 90 38 0 chr4 18507337 18507626 -183820721 + AluSx SINE Alu 1 300 -12 1461 152 13 56 chr4 18507626 18507803 -183820544 + AluJo SINE Alu 138 298 -14 1936 131 10 0 chr4 18508406 18508696 -183819651 - AluSx SINE Alu -19 293 1 1192 128 0 36 chr4 18508752 18508948 -183819399 + AluSg/x SINE Alu 106 294 -18 450 250 90 80 chr4 18509011 18509170 -183819177 + L2 LINE L2 2544 2707 -607 836 147 0 16 chr4 18509170 18509299 -183819048 + FLAM_C SINE Alu 1 127 -6 450 250 90 80 chr4 18509299 18509327 -183819020 + L2 LINE L2 2707 2733 -581 1629 171 32 0 chr4 18509568 18509849 -183818498 + AluJb SINE Alu 1 290 -22 1078 157 73 33 chr4 18509862 18510004 -183818343 + Charlie1 DNA MER1_type 2477 2612 -149 2160 92 7 0 chr4 18510004 18510297 -183818050 - AluY SINE Alu -16 295 1 1078 157 73 33 chr4 18510297 18510428 -183817919 + Charlie1 DNA MER1_type 2612 2761 0 386 229 52 143 chr4 18510463 18510694 -183817653 - L2 LINE L2 -1 3312 3103 480 299 256 11 chr4 18510769 18511144 -183817203 + L2 LINE L2 2830 3296 -17 1978 94 17 3 chr4 18511213 18511501 -183816846 + AluSx SINE Alu 1 292 -20 2481 38 0 0 chr4 18511554 18511846 -183816501 + AluY SINE Alu 2 293 -18 1056 207 114 4 chr4 18511852 18512123 -183816224 + AluJb SINE Alu 2 302 0 324 272 35 18 chr4 18512316 18512430 -183815917 - MIR SINE MIR -58 150 35 221 235 78 0 chr4 18512969 18513020 -183815327 - MIR SINE MIR -119 143 89 2268 73 0 13 chr4 18513592 18513905 -183814442 + AluSg SINE Alu 2 310 0 2040 82 18 4 chr4 18514037 18514316 -183814031 - AluSg SINE Alu -27 283 1 233 388 10 0 chr4 18514515 18514618 -183813729 + L2 LINE L2 2723 2826 -488 285 206 52 125 chr4 18514757 18514893 -183813454 + L2 LINE L2 3188 3313 0 417 341 16 0 chr4 18515502 18515631 -183812716 - MIR3 SINE MIR -28 180 50 1962 102 7 3 chr4 18515694 18515977 -183812370 + AluSx SINE Alu 9 292 -20 1813 160 16 0 chr4 18516061 18516368 -183811979 - AluJb SINE Alu 0 312 1 1813 102 0 77 chr4 18516588 18516901 -183811446 - AluY SINE Alu -22 289 1 486 276 138 40 chr4 18517345 18517642 -183810705 - L2 LINE L2 -3 3310 2985 25 0 0 0 chr4 18518285 18518310 -183810037 + AT_rich Low_complexity Low_complexity 1 25 0 1673 140 72 0 chr4 18518416 18518694 -183809653 - AluSq SINE Alu -15 298 1 1586 159 6 41 chr4 18518754 18519069 -183809278 - AluJo SINE Alu -8 304 1 2105 106 3 0 chr4 18519080 18519373 -183808974 - AluSc SINE Alu -15 294 1 2438 118 31 14 chr4 18520752 18521107 -183807240 - THE1B LTR MaLR -3 361 1 2112 121 7 0 chr4 18521180 18521477 -183806870 + AluSx SINE Alu 1 299 -13 277 238 0 16 chr4 18524081 18524144 -183804203 + MIR SINE MIR 131 192 -70 1077 132 0 0 chr4 18524152 18524311 -183804036 + AluSp SINE Alu 137 295 -18 406 86 0 17 chr4 18524740 18524798 -183803549 - Alu SINE Alu -20 292 236 1233 125 115 10 chr4 18524963 18525025 -183803322 - AluSx SINE Alu -91 221 167 2027 100 31 0 chr4 18525025 18525314 -183803033 - AluSc SINE Alu -11 298 1 1233 125 115 10 chr4 18525314 18525451 -183802896 - AluSx SINE Alu -145 167 1 953 85 0 0 chr4 18525782 18525911 -183802436 + AluSg/x SINE Alu 173 301 -9 510 255 121 38 chr4 18526077 18526316 -183802031 + MER90 LTR ERV1 1 259 -316 534 152 0 0 chr4 18526317 18526409 -183801938 + (TG)n Simple_repeat Simple_repeat 2 93 0 904 208 212 4 chr4 18526422 18526677 -183801670 + MER90 LTR ERV1 307 614 0 1667 82 21 4 chr4 18527070 18527303 -183801044 + AluSx SINE Alu 55 291 -21 663 309 127 37 chr4 18527307 18527686 -183800661 + ERVL LTR ERVL 2310 2722 -3042 379 246 60 60 chr4 18527893 18528076 -183800271 + L1ME LINE L1 5525 5707 -414 1803 175 33 19 chr4 18528314 18528674 -183799673 + MLT1A1 LTR MaLR 1 365 0 956 173 226 12 chr4 18529282 18529525 -183798822 - AluJo SINE Alu -7 295 1 1904 152 0 13 chr4 18530120 18530435 -183797912 - AluJb SINE Alu 0 312 2 2019 111 3 3 chr4 18530985 18531283 -183797064 - AluSx SINE Alu -14 298 1 676 296 28 9 chr4 18531342 18531555 -183796792 - MIR SINE MIR 0 262 46 396 296 117 39 chr4 18532145 18532392 -183795955 - MER46C DNA MER2_type -3 335 58 2052 130 0 0 chr4 18532392 18532685 -183795662 - AluSx SINE Alu -19 293 1 396 296 117 39 chr4 18532685 18532744 -183795603 - MER46C DNA MER2_type -280 58 5 291 187 88 0 chr4 18532843 18532934 -183795413 - L1ME4a LINE L1 -15 6106 6008 541 223 79 60 chr4 18533547 18533812 -183794535 - L1MC5 LINE L1 -60 7901 7632 1957 109 18 0 chr4 18534178 18534463 -183793884 - AluSx SINE Alu -21 291 2 2038 91 0 7 chr4 18535090 18535388 -183792959 - AluSg SINE Alu -14 296 1 519 221 195 15 chr4 18535475 18535670 -183792677 + MIR SINE MIR 13 242 -20 674 237 190 37 chr4 18535794 18536196 -183792151 + L2 LINE L2 2570 2909 -404 1877 112 3 86 chr4 18536196 18536238 -183792109 - AluJb SINE Alu -1 311 267 228 35 0 0 chr4 18536238 18536267 -183792080 + (TTTTG)n Simple_repeat Simple_repeat 1 29 0 1877 112 3 86 chr4 18536267 18536563 -183791784 - AluJb SINE Alu -45 267 1 674 237 190 37 chr4 18536563 18536712 -183791635 + L2 LINE L2 2909 3313 0 1629 138 15 0 chr4 18536926 18537194 -183791153 - AluSx SINE Alu -40 272 1 263 284 15 0 chr4 18537194 18537261 -183791086 + MER81 DNA DNA 47 114 0 2149 97 0 10 chr4 18537893 18538193 -183790154 - AluSq SINE Alu -16 297 1 2151 83 6 41 chr4 18538252 18538566 -183789781 + AluSg SINE Alu 1 303 -7 509 236 50 45 chr4 18538653 18538852 -183789495 + L1M4 LINE L1 3317 3516 -2630 318 288 52 63 chr4 18538898 18538986 -183789361 - MIR SINE MIR -13 249 162 1850 158 0 0 chr4 18538986 18539290 -183789057 - AluSx SINE Alu -3 309 6 318 288 52 63 chr4 18539290 18539392 -183788955 - MIR SINE MIR -100 162 61 2116 85 0 63 chr4 18539528 18539859 -183788488 - AluSg SINE Alu 0 310 1 186 355 108 64 chr4 18540622 18540873 -183787474 + L2 LINE L2 3007 3268 -4 14418 35 0 2 chr4 18542307 18544804 -183783543 + L1PA5 LINE L1 3650 6154 0 1641 166 20 7 chr4 18545314 18545610 -183782737 - AluJo SINE Alu -12 300 1 454 275 8 67 chr4 18546036 18546226 -183782121 - MIR SINE MIR -55 153 16 2137 105 7 33 chr4 18546410 18546716 -183781631 - AluSx SINE Alu -14 298 1 247 296 74 0 chr4 18547136 18547217 -183781130 + L2 LINE L2 3227 3313 0 2433 87 0 0 chr4 18547364 18547662 -183780685 + AluY SINE Alu 1 298 -13 735 241 7 0 chr4 18547849 18548270 -183780077 + (TCCA)n Simple_repeat Simple_repeat 1 424 0 776 144 0 38 chr4 18548964 18549096 -183779251 - FLAM_C SINE Alu -5 128 2 2720 48 0 3 chr4 18549317 18549628 -183778719 + AluY SINE Alu 1 310 -1 969 225 5 14 chr4 18549674 18549883 -183778464 - MIR SINE MIR -25 237 31 553 256 44 30 chr4 18550130 18550191 -183778156 - MIR SINE MIR 0 262 203 2437 61 20 0 chr4 18550191 18550485 -183777862 - AluY SINE Alu -11 300 1 553 256 44 30 chr4 18550485 18550626 -183777721 - MIR SINE MIR -59 203 57 237 219 47 16 chr4 18551231 18551295 -183777052 + MLT1K LTR MaLR 183 248 -340 180 204 0 82 chr4 18551635 18551684 -183776663 - L2 LINE L2 -5 3267 3223 2284 141 100 50 chr4 18551766 18552247 -183776100 + MLT1D LTR MaLR 1 505 0 194 189 14 95 chr4 18552296 18552370 -183775977 - MIR SINE MIR -114 148 81 749 181 16 0 chr4 18552413 18552540 -183775807 - FLAM_C SINE Alu -10 133 5 1668 179 24 0 chr4 18552913 18553204 -183775143 - AluJo SINE Alu -11 301 4 750 246 22 6 chr4 18553892 18554075 -183774272 - MIR SINE MIR -35 227 42 2085 155 0 0 chr4 18554453 18554763 -183773584 - AluSx SINE Alu -2 310 1 1212 278 116 44 chr4 18554784 18555553 -183772794 - HAL1 LINE L1 0 2507 1684 2343 115 0 0 chr4 18555714 18556018 -183772329 - AluSx SINE Alu -8 304 1 474 238 33 0 chr4 18556202 18556324 -183772023 + MIR SINE MIR 65 190 -72 222 263 28 164 chr4 18556881 18557170 -183771177 + L2 LINE L2 2972 3299 -14 2014 141 3 7 chr4 18557170 18557468 -183770879 - AluJo SINE Alu -15 297 1 222 263 28 164 chr4 18557468 18557549 -183770798 + L2 LINE L2 3299 3288 -25 2452 77 3 0 chr4 18557549 18557847 -183770500 - AluSx SINE Alu -13 299 1 222 263 28 164 chr4 18557847 18557871 -183770476 + L2 LINE L2 3287 3313 0 449 300 96 23 chr4 18559087 18559307 -183769040 + MIR SINE MIR 2 237 -25 2272 98 0 7 chr4 18559330 18559635 -183768712 + AluSq SINE Alu 1 303 -10 3516 219 57 19 chr4 18559935 18560398 -183767949 - L1ME2 LINE L1 -1 6163 5719 2266 113 0 0 chr4 18560398 18560698 -183767649 - AluSx SINE Alu -11 301 2 3516 219 57 19 chr4 18560698 18560996 -183767351 - L1ME2 LINE L1 -445 5719 5366 2076 152 0 3 chr4 18560996 18561298 -183767049 - AluJb SINE Alu -11 301 1 3516 219 57 19 chr4 18561298 18561360 -183766987 - L1ME2 LINE L1 -798 5366 5308 1925 134 13 10 chr4 18561364 18561677 -183766670 + L1P LINE L1 4076 4389 -1757 261 0 0 0 chr4 18561677 18561706 -183766641 + (CA)n Simple_repeat Simple_repeat 2 30 0 2111 145 27 19 chr4 18561774 18562146 -183766201 + THE1C LTR MaLR 1 375 0 208 328 160 0 chr4 18562356 18562481 -183765866 + MIR SINE MIR 88 232 -30 201 74 0 0 chr4 18562729 18562756 -183765591 + (A)n Simple_repeat Simple_repeat 1 27 0 253 386 0 15 chr4 18562967 18563099 -183765248 - MIR SINE MIR -120 142 13 357 295 11 0 chr4 18563554 18563649 -183764698 + MIR3 SINE MIR 65 160 -48 414 278 132 5 chr4 18563815 18564020 -183764327 + L2 LINE L2 1886 2116 -1198 290 216 165 0 chr4 18564056 18564153 -183764194 + L2 LINE L2 2899 3011 -302 359 271 371 6 chr4 18564174 18564344 -183764003 + MIR SINE MIR 15 246 -16 1926 144 0 63 chr4 18564364 18564683 -183763664 - AluSx SINE Alu -11 301 3 578 260 119 22 chr4 18564700 18564927 -183763420 + L2 LINE L2 3047 3295 -18 1688 196 10 3 chr4 18565011 18565317 -183763030 - AluJo SINE Alu 0 312 5 817 291 63 29 chr4 18565708 18566024 -183762323 + MLT2F LTR ERVL 1 327 -336 1088 269 70 36 chr4 18566024 18566437 -183761910 + MLT2F LTR ERVL 237 663 0 225 265 44 0 chr4 18566438 18566506 -183761841 + L2 LINE L2 2978 3048 -224 2242 118 0 9 chr4 18566582 18566897 -183761450 - AluSx SINE Alu 0 312 1 347 186 93 35 chr4 18566916 18567002 -183761345 - L2 LINE L2 -13 3300 3210 337 274 94 18 chr4 18567689 18567912 -183760435 + L1M4 LINE L1 2405 2644 -3502 382 246 156 24 chr4 18568183 18568517 -183759830 + L1M4 LINE L1 2961 3338 -2808 236 352 29 9 chr4 18568783 18568888 -183759459 - MIR SINE MIR -68 140 34 1972 269 28 10 chr4 18569044 18569546 -183758801 + L1PB1 LINE L1 1 511 -5380 2176 206 64 13 chr4 18569548 18570381 -183757966 + L1PB1 LINE L1 684 1244 -4677 * 3142 202 1 22 chr4 18570374 18571023 -183757324 - L1 LINE L1 -1941 4205 3570 6205 96 18 3 chr4 18571023 18571985 -183756362 + L1PB1 LINE L1 5177 6151 0 862 261 28 4 chr4 18572003 18572256 -183756091 + L1PB1 LINE L1 1305 1563 -4407 14143 125 32 25 chr4 18572270 18574540 -183753807 - Tigger1 DNA MER2_type 0 2418 132 1180 143 26 0 chr4 18574539 18574728 -183753619 + Tigger1 DNA MER2_type 2224 2417 -1 * 413 192 0 0 chr4 18574728 18574801 -183753546 + Tigger3(Golem) DNA MER2_type 69 141 -2888 * 1600 149 4 19 chr4 18574799 18575061 -183753286 + Tigger3(Golem) DNA MER2_type 2771 3028 -1 1922 158 0 7 chr4 18575117 18575409 -183752938 - AluJb SINE Alu -22 290 1 9953 156 17 11 chr4 18575450 18578198 -183750149 + L1PB1 LINE L1 3172 5927 -48 467 187 60 22 chr4 18578176 18578310 -183750037 + L1MA8 LINE L1 5972 6110 -5 * 407 63 0 16 chr4 18578484 18578547 -183749800 + L1PB1 LINE L1 6090 6151 0 1870 158 7 7 chr4 18580542 18580858 -183747489 - AluSx SINE Alu 0 312 3 282 328 175 11 chr4 18581212 18581389 -183746958 + L1MC4a LINE L1 5427 5632 -2176 665 293 99 9 chr4 18581412 18581634 -183746713 - MIR SINE MIR -20 242 1 389 227 37 49 chr4 18581647 18581850 -183746497 + L1MC4a LINE L1 5692 5798 -323 1687 161 32 4 chr4 18581855 18582134 -183746213 + AluJb SINE Alu 1 287 -25 253 90 41 49 chr4 18582159 18582281 -183746066 + (TATAA)n Simple_repeat Simple_repeat 1 121 0 198 71 0 0 chr4 18582275 18582303 -183746044 + (TTA)n Simple_repeat Simple_repeat 2 29 0 * 210 356 11 0 chr4 18582622 18582712 -183745635 + L2 LINE L2 3182 3272 0 3371 75 17 9 chr4 18582812 18583278 -183745069 + L1PA10 LINE L1 5699 6168 0 2373 90 0 32 chr4 18583330 18583641 -183744706 + AluSg SINE Alu 1 301 -9 790 155 210 55 chr4 18583732 18583913 -183744434 + MER20 DNA MER1_type 3 211 -8 311 260 145 41 chr4 18584576 18584721 -183743626 + MIR SINE MIR 20 200 -62 1919 153 3 0 chr4 18584721 18585015 -183743332 + AluJb SINE Alu 1 295 -17 311 260 145 41 chr4 18585015 18585086 -183743261 + MIR SINE MIR 200 262 0 1712 218 43 41 chr4 18585528 18585992 -183742355 + MLT1C LTR MaLR 3 467 0 2350 109 0 3 chr4 18586742 18587054 -183741293 - AluSx SINE Alu -1 311 1 853 133 0 52 chr4 18587709 18587844 -183740503 - FLAM_C SINE Alu -5 128 1 295 123 18 18 chr4 18587850 18587907 -183740440 - MIR SINE MIR -55 207 151 2315 110 3 0 chr4 18587928 18588228 -183740119 + AluSx SINE Alu 1 301 -11 202 262 79 37 chr4 18588276 18588440 -183739907 - L2 LINE L2 -261 3011 2841 927 259 28 4 chr4 18589189 18589444 -183738903 + MIR SINE MIR 2 262 0 2315 106 3 3 chr4 18589465 18589777 -183738570 + AluSx SINE Alu 1 312 0 2296 75 0 0 chr4 18589854 18590132 -183738215 + AluSc SINE Alu 21 298 -11 207 224 20 10 chr4 18590227 18590325 -183738022 + GA-rich Low_complexity Low_complexity 4 102 0 183 295 49 0 chr4 18590663 18590724 -183737623 + MER5B DNA MER1_type 115 178 0 648 159 6 99 chr4 18590886 18591068 -183737279 - ORSL DNA AcHobo -110 165 1 263 257 76 0 chr4 18591125 18591230 -183737117 + MLT1L LTR MaLR 489 601 -14 813 157 0 43 chr4 18591891 18592031 -183736316 + AluJo SINE Alu 1 134 -178 2473 71 0 0 chr4 18592303 18592599 -183735748 + AluY SINE Alu 1 296 -15 632 264 155 27 chr4 18592719 18593125 -183735222 - L2 LINE L2 0 3313 2856 884 256 155 43 chr4 18593166 18593211 -183735136 - L2 LINE L2 -584 2730 2691 1847 165 3 25 chr4 18593211 18593527 -183734820 - AluJo SINE Alu -3 309 1 884 256 155 43 chr4 18593527 18594035 -183734312 - L2 LINE L2 -623 2691 2115 367 325 92 6 chr4 18594133 18594296 -183734051 - MIR SINE MIR 0 262 86 1662 182 0 4 chr4 18594605 18594920 -183733427 + AluJo SINE Alu 15 328 0 273 351 115 32 chr4 18594925 18595367 -183732980 - L2 LINE L2 -429 2885 2407 189 132 0 0 chr4 18596139 18596177 -183732170 + (CAAAAA)n Simple_repeat Simple_repeat 2 39 0 240 293 0 12 chr4 18596718 18596800 -183731547 + L1MEc LINE L1 610 690 -5706 3107 235 120 17 chr4 18596870 18598950 -183729397 + L1MEc LINE L1 661 2956 -3259 227 243 171 79 chr4 18599359 18599499 -183728848 + MIR SINE MIR 5 157 -105 435 322 48 35 chr4 18599526 18599756 -183728591 + LTR67 LTR ERVL 2 234 -323 233 186 23 0 chr4 18599805 18599848 -183728499 + MER3 DNA MER1_type 3 46 -163 1049 163 6 0 chr4 18599902 18600074 -183728273 + MER3 DNA MER1_type 37 209 0 604 236 156 5 chr4 18600121 18600320 -183728027 + LTR67 LTR ERVL 329 557 0 486 258 126 0 chr4 18601033 18601184 -183727163 + MIR SINE MIR 25 194 -68 1906 139 3 7 chr4 18601278 18601580 -183726767 + AluJb SINE Alu 3 303 -9 408 273 58 88 chr4 18601582 18601712 -183726635 - MIR SINE MIR 0 262 134 2325 91 0 0 chr4 18601712 18602020 -183726327 + AluSc SINE Alu 1 308 -1 408 273 58 88 chr4 18602020 18602124 -183726223 - MIR SINE MIR -128 134 28 394 282 39 77 chr4 18602468 18602702 -183725645 - MIR SINE MIR -5 257 33 245 229 20 144 chr4 18602833 18602986 -183725361 + L2 LINE L2 3138 3271 -1 404 239 23 0 chr4 18604648 18604736 -183723611 + MIR SINE MIR 64 153 -55 565 155 0 0 chr4 18604749 18604833 -183723514 + AluJ/FLAM SINE Alu 2 85 -227 1845 149 0 7 chr4 18604854 18605149 -183723198 - AluSq SINE Alu -20 293 1 806 144 8 0 chr4 18605163 18605288 -183723059 - AluJo SINE Alu -176 136 11 312 293 121 56 chr4 18606204 18606419 -183721928 + MIR SINE MIR 23 251 -11 2020 128 0 0 chr4 18606428 18606724 -183721623 + AluSx SINE Alu 5 300 -12 414 0 0 0 chr4 18606725 18606771 -183721576 + (TA)n Simple_repeat Simple_repeat 1 46 0 273 29 0 0 chr4 18606771 18606805 -183721542 + (TG)n Simple_repeat Simple_repeat 2 35 0 233 238 0 0 chr4 18606859 18606901 -183721446 + L2 LINE L2 3210 3251 -21 247 323 31 36 chr4 18607804 18607996 -183720351 - LTR16C LTR ERVL -20 471 281 280 235 44 15 chr4 18607996 18608064 -183720283 - L2 LINE L2 -559 2755 2686 1948 113 7 3 chr4 18608105 18608416 -183719931 + AluSq SINE Alu 1 312 0 1116 256 10 7 chr4 18608439 18608728 -183719619 + L1M4 LINE L1 3821 4110 -2036 605 297 50 14 chr4 18608806 18609025 -183719322 - L2 LINE L2 -843 2471 2245 422 302 144 62 chr4 18609025 18609132 -183719215 - L2 LINE L2 -1578 1736 1639 1716 164 7 17 chr4 18609132 18609261 -183719086 + AluJb SINE Alu 1 130 -182 1995 123 7 0 chr4 18609261 18609569 -183718778 + AluSg SINE Alu 1 310 0 1716 164 7 17 chr4 18609569 18609738 -183718609 + AluJb SINE Alu 130 296 -16 422 302 144 62 chr4 18609738 18610270 -183718077 - L2 LINE L2 -1675 1639 1045 351 252 47 9 chr4 18610284 18610391 -183717956 - L2 LINE L2 -2488 826 716 438 271 114 12 chr4 18611092 18611258 -183717089 + L2 LINE L2 3131 3313 0 266 303 133 36 chr4 18611577 18611742 -183716605 - MIR SINE MIR 0 262 82 370 318 63 91 chr4 18611817 18612069 -183716278 - L2 LINE L2 0 3272 3028 191 388 39 10 chr4 18612111 18612214 -183716133 + L2 LINE L2 3196 3301 -12 603 269 107 43 chr4 18612286 18612644 -183715703 + MLT1J2 LTR MaLR 70 438 -12 813 232 66 6 chr4 18612644 18612825 -183715522 - MER68 LTR ERV1 -2 560 369 300 244 0 26 chr4 18613164 18613242 -183715105 - L1MC4a LINE L1 -1903 5905 5830 2065 134 0 3 chr4 18613254 18613567 -183714780 + AluSx SINE Alu 1 312 0 1639 140 22 0 chr4 18613580 18613851 -183714496 + L1MA8 LINE L1 6015 6291 0 1630 171 13 10 chr4 18614402 18614707 -183713640 - AluJb SINE Alu -6 306 1 237 65 0 0 chr4 18614869 18614900 -183713447 + (TTTTA)n Simple_repeat Simple_repeat 4 34 0 1619 162 11 4 chr4 18614900 18615172 -183713175 - AluSx SINE Alu -38 274 1 508 231 172 0 chr4 18615197 18615331 -183713016 + MIR SINE MIR 96 252 -10 294 364 0 23 chr4 18615871 18615945 -183712402 - MIR SINE MIR -10 252 181 365 195 39 0 chr4 18615945 18616022 -183712325 - MADE1 DNA Mariner 0 80 1 294 364 0 23 chr4 18616022 18616076 -183712271 - MIR SINE MIR -81 181 127 245 295 137 55 chr4 18616108 18616291 -183712056 + MIR SINE MIR 65 262 0 251 290 0 14 chr4 18616311 18616380 -183711967 - MIR SINE MIR -165 97 30 246 297 119 10 chr4 18616438 18616539 -183711808 - L2 LINE L2 -16 3297 3186 372 254 63 130 chr4 18616584 18616946 -183711401 + MLT1H LTR MaLR 39 376 -33 3014 159 18 25 chr4 18617015 18617569 -183710778 - MER44D DNA MER2_type 0 605 1 2362 261 107 14 chr4 18617641 18618437 -183709910 + L2 LINE L2 1591 2460 -854 1530 120 28 99 chr4 18618440 18618667 -183709680 + L1M3 LINE L1 5374 5579 -604 2081 127 0 0 chr4 18618667 18618975 -183709372 + AluSc SINE Alu 1 308 -1 1530 120 28 99 chr4 18618975 18619031 -183709316 + L1M3 LINE L1 5579 5637 -546 350 306 89 8 chr4 18619033 18619157 -183709190 + L2 LINE L2 3179 3312 -1 2365 69 3 3 chr4 18619164 18619468 -183708879 + AluY SINE Alu 1 304 -7 263 290 46 11 chr4 18619799 18619910 -183708437 + MER5A DNA MER1_type 63 175 -3 437 147 0 0 chr4 18622064 18622139 -183706208 + L1PB3 LINE L1 6073 6147 -7 291 104 0 0 chr4 18622173 18622221 -183706126 + (CA)n Simple_repeat Simple_repeat 1 48 0 523 238 50 12 chr4 18622221 18622381 -183705966 + L1ME4a LINE L1 5947 6112 -9 227 299 26 86 chr4 18623212 18623329 -183705018 + L2 LINE L2 3160 3269 -3 2261 77 0 3 chr4 18623988 18624285 -183704062 - AluY SINE Alu -15 296 1 1370 296 66 28 chr4 18624286 18624422 -183703925 - MLT1K LTR MaLR -3 585 456 183 42 0 0 chr4 18624422 18624446 -183703901 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2021 126 0 0 chr4 18624448 18624733 -183703614 - AluSq SINE Alu -28 285 1 1370 296 66 28 chr4 18624733 18625063 -183703284 - MLT1K LTR MaLR -132 456 98 352 245 13 86 chr4 18625360 18625485 -183702862 + MIR3 SINE MIR 18 132 -76 1791 131 40 96 chr4 18625485 18625882 -183702465 - THE1C LTR MaLR 0 375 1 352 245 13 86 chr4 18625882 18625907 -183702440 + MIR3 SINE MIR 132 157 -51 773 206 7 14 chr4 18626059 18626200 -183702147 + AluJo SINE Alu 3 142 -170 293 269 0 0 chr4 18626201 18626279 -183702068 + (ATG)n Simple_repeat Simple_repeat 1 78 0 944 124 0 0 chr4 18626322 18626459 -183701888 + FRAM SINE Alu 21 157 -19 24 0 0 0 chr4 18626802 18626826 -183701521 + AT_rich Low_complexity Low_complexity 1 24 0 15266 54 0 9 chr4 18626830 18628692 -183699655 + L1P LINE L1 8 1852 -4294 * 30548 34 86 3 chr4 18628687 18633408 -183694939 + L1PA4 LINE L1 1026 6155 0 26 30 0 0 chr4 18633431 18633464 -183694883 + AT_rich Low_complexity Low_complexity 1 33 0 23 0 0 0 chr4 18633513 18633536 -183694811 + AT_rich Low_complexity Low_complexity 1 23 0 727 353 25 0 chr4 18634099 18634340 -183694007 - MIR SINE MIR -6 256 10 554 224 25 31 chr4 18634763 18634924 -183693423 - MLT1J LTR MaLR -313 198 39 2187 107 3 0 chr4 18634924 18635224 -183693123 + AluSq SINE Alu 1 301 -12 323 342 34 8 chr4 18635319 18635436 -183692911 - MIR SINE MIR -70 138 19 199 323 75 11 chr4 18635610 18635703 -183692644 - MIR3 SINE MIR -11 197 99 241 237 110 42 chr4 18635915 18636033 -183692314 - L2 LINE L2 -44 3269 3144 668 269 45 74 chr4 18636110 18636422 -183691925 + MLT1K LTR MaLR 124 426 -162 197 319 125 60 chr4 18636480 18636696 -183691651 - MIR SINE MIR -1 261 32 2289 139 68 12 chr4 18636735 18637144 -183691203 + MSTB1 LTR MaLR 1 432 0 471 251 20 96 chr4 18637551 18637617 -183690730 + MLT1J LTR MaLR 326 395 -116 1893 135 0 7 chr4 18637617 18637913 -183690434 - AluSx SINE Alu -14 298 5 471 251 20 96 chr4 18637913 18638045 -183690302 + MLT1J LTR MaLR 395 509 -2 327 233 0 41 chr4 18638056 18638129 -183690218 + L2 LINE L2 3189 3258 -14 2053 135 0 0 chr4 18638131 18638435 -183689912 + AluSx SINE Alu 1 304 -8 1073 278 60 14 chr4 18639108 18639472 -183688875 - L2 LINE L2 -1 3312 2932 2296 86 3 0 chr4 18639473 18639777 -183688570 + AluSx SINE Alu 1 305 -7 823 222 10 24 chr4 18639781 18639988 -183688359 + L1MB1 LINE L1 5825 6028 -140 818 161 39 7 chr4 18640020 18640175 -183688172 + L1MB1 LINE L1 6007 6166 -2 387 89 0 0 chr4 18640175 18640231 -183688116 + (TA)n Simple_repeat Simple_repeat 2 57 0 615 160 0 10 chr4 18640247 18640484 -183687863 + AluJo SINE Alu 1 271 -41 975 249 145 60 chr4 18640491 18641223 -183687124 + LTR1B LTR ERV1 33 826 0 558 269 130 4 chr4 18641302 18641540 -183686807 - L2 LINE L2 -424 2890 2623 1708 204 184 37 chr4 18641849 18642393 -183685954 - MLT1E3 LTR MaLR 0 624 1 446 0 19 0 chr4 18642523 18642577 -183685770 + (CA)n Simple_repeat Simple_repeat 1 55 0 1133 96 0 0 chr4 18642652 18642808 -183685539 + AluSg/x SINE Alu 152 307 -3 286 303 124 28 chr4 18643271 18643318 -183685029 + MIR3 SINE MIR 49 90 -118 974 326 10 59 chr4 18643318 18643806 -183684541 + LTR16B LTR ERVL 1 464 0 286 303 124 28 chr4 18643806 18643903 -183684444 + MIR3 SINE MIR 90 207 -1 2123 108 0 10 chr4 18644024 18644320 -183684027 - AluSx SINE Alu -19 293 1 207 277 31 31 chr4 18644443 18644508 -183683839 - MER5A DNA MER1_type 0 189 125 2176 88 0 7 chr4 18644510 18644807 -183683540 + AluY SINE Alu 1 295 -16 2226 94 0 23 chr4 18644817 18645125 -183683222 + AluSx SINE Alu 1 301 -11 1980 118 7 20 chr4 18645580 18645701 -183682646 + AluSx SINE Alu 10 131 -181 2702 19 0 0 chr4 18645701 18646010 -183682337 + AluY SINE Alu 1 309 -2 1980 118 7 20 chr4 18646010 18646194 -183682153 + AluSx SINE Alu 131 311 -1 1761 167 0 10 chr4 18646567 18646878 -183681469 - AluJb SINE Alu -4 308 1 1307 207 13 26 chr4 18646889 18647194 -183681153 - AluJo SINE Alu -11 301 1 794 158 0 16 chr4 18647364 18647491 -183680856 + FLAM_C SINE Alu 4 128 -5 659 310 69 38 chr4 18647761 18648342 -183680005 - L1ME4a LINE L1 -56 6065 5467 1019 217 58 0 chr4 18648537 18648744 -183679603 - MER20 DNA MER1_type 0 219 1 741 289 159 56 chr4 18648829 18649087 -183679260 + MLT1L LTR MaLR 21 251 -364 2298 106 3 0 chr4 18649087 18649390 -183678957 + AluSx SINE Alu 1 304 -8 741 289 159 56 chr4 18649390 18649664 -183678683 + MLT1L LTR MaLR 251 608 -7 396 0 0 0 chr4 18649885 18649929 -183678418 + (CA)n Simple_repeat Simple_repeat 1 44 0 214 196 0 22 chr4 18650004 18650050 -183678297 + A-rich Low_complexity Low_complexity 4 48 0 312 372 0 7 chr4 18650348 18650493 -183677854 + (TGGG)n Simple_repeat Simple_repeat 1 144 0 219 268 125 9 chr4 18651250 18651362 -183676985 + L2 LINE L2 3139 3263 -50 181 294 44 0 chr4 18651606 18651674 -183676673 + L3b LINE CR1 1397 1467 -116 1834 184 35 111 chr4 18651710 18652189 -183676158 - LTR47B LTR ERVL 0 443 1 2294 108 3 9 chr4 18652331 18652646 -183675701 + AluSp SINE Alu 1 313 0 23 0 0 0 chr4 18652917 18652940 -183675407 + AT_rich Low_complexity Low_complexity 1 23 0 1562 190 54 0 chr4 18652941 18653220 -183675127 - AluJo SINE Alu -18 294 1 6098 84 15 1 chr4 18653329 18654137 -183674210 + L1PA11 LINE L1 5351 6169 -5 1101 202 22 101 chr4 18654132 18654489 -183673858 + L1MC5 LINE L1 6643 6971 -990 * 2640 214 39 82 chr4 18654510 18654713 -183673634 + L1MC5 LINE L1 6956 7166 -795 2078 128 7 0 chr4 18654713 18655002 -183673345 + AluSx SINE Alu 10 300 -12 2640 214 39 82 chr4 18655002 18655797 -183672550 + L1MC5 LINE L1 7166 7911 -50 482 231 32 39 chr4 18655985 18656141 -183672206 + L2 LINE L2 2231 2385 -929 321 268 116 18 chr4 18656134 18656246 -183672101 + MIR3 SINE MIR 62 184 -24 * 1362 134 140 32 chr4 18657238 18657553 -183670794 + MSTA LTR MaLR 1 398 -30 2133 109 36 13 chr4 18657553 18657857 -183670490 - AluSx SINE Alu -1 311 1 2239 106 0 19 chr4 18658246 18658558 -183669789 + AluSg SINE Alu 2 307 -3 577 153 14 10 chr4 18659057 18659197 -183669150 + MER20B DNA MER1_type 33 216 -3 950 184 69 56 chr4 18659274 18659305 -183669042 + MLT1B LTR MaLR 155 184 -206 186 43 0 0 chr4 18659305 18659328 -183669019 + (TC)n Simple_repeat Simple_repeat 2 24 0 950 184 69 56 chr4 18659328 18659529 -183668818 + MLT1B LTR MaLR 184 390 0 1906 108 24 0 chr4 18659623 18659874 -183668473 - AluSq SINE Alu -48 265 9 277 323 8 8 chr4 18659898 18660028 -183668319 + L2 LINE L2 1932 2061 -1253 225 0 0 0 chr4 18660081 18660106 -183668241 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 199 314 0 0 chr4 18660209 18660260 -183668087 + L2 LINE L2 3263 3313 0 210 375 0 0 chr4 18660286 18660350 -183667997 + L2 LINE L2 2217 2280 -1034 222 128 0 0 chr4 18661454 18661493 -183666854 + (CA)n Simple_repeat Simple_repeat 1 39 0 195 333 86 0 chr4 18662592 18662673 -183665674 - L2 LINE L2 -27 3286 3199 241 51 26 51 chr4 18662805 18662844 -183665503 + MER5A DNA MER1_type 39 76 -113 2062 131 13 3 chr4 18662844 18663142 -183665205 + AluJo SINE Alu 1 301 -11 28 48 0 0 chr4 18663460 18663502 -183664845 + AT_rich Low_complexity Low_complexity 1 42 0 8818 134 67 43 chr4 18663773 18665432 -183662915 - pTR5 LTR ERV1 0 2438 741 299 207 0 0 chr4 18665784 18665842 -183662505 - MER94 DNA DNA -76 58 1 1098 186 51 140 chr4 18665969 18666340 -183662007 - MER58B DNA MER1_type -1 340 3 2003 117 18 7 chr4 18666349 18666631 -183661716 - AluSx SINE Alu -22 290 6 197 200 0 0 chr4 18666817 18666847 -183661500 + L2 LINE L2 3224 3253 -19 2400 94 7 0 chr4 18666856 18667164 -183661183 - AluSp SINE Alu -3 310 1 239 210 202 48 chr4 18667191 18667315 -183661032 + L1ME LINE L1 5772 5914 -207 506 194 0 20 chr4 18667843 18667941 -183660406 - L2 LINE L2 -10 3303 3208 539 314 102 46 chr4 18668055 18668488 -183659859 - L2 LINE L2 -352 2962 2506 2232 93 0 7 chr4 18668498 18668827 -183659520 - AluSx SINE Alu 0 327 1 849 172 35 12 chr4 18668879 18669048 -183659299 - L1MB8 LINE L1 -2 6176 6004 966 161 180 9 chr4 18669073 18669295 -183659052 - L1MB8 LINE L1 -402 5776 5517 251 188 62 0 chr4 18669297 18669361 -183658986 - L2 LINE L2 -608 2706 2639 250 315 206 0 chr4 18670042 18670134 -183658213 - L2 LINE L2 -245 3068 2958 219 300 39 78 chr4 18671152 18671332 -183657015 + MIR SINE MIR 48 220 -42 2416 91 3 0 chr4 18671631 18671938 -183656409 - AluSp SINE Alu -5 308 1 1607 163 36 4 chr4 18672156 18672462 -183655885 + AluJb SINE Alu 1 315 0 329 203 25 38 chr4 18672671 18672750 -183655597 - MER5B DNA MER1_type 0 178 101 587 208 57 158 chr4 18672807 18673049 -183655298 - L1MC4 LINE L1 -5 8037 7772 1509 85 0 0 chr4 18673049 18673237 -183655110 - AluSc SINE Alu -2 307 120 587 208 57 158 chr4 18673237 18673255 -183655092 - L1MC4 LINE L1 -270 7772 7754 2087 110 0 7 chr4 18673255 18673546 -183654801 - AluSc SINE Alu -20 289 1 587 208 57 158 chr4 18673546 18673741 -183654606 - L1MC4 LINE L1 -288 7754 7627 1806 160 14 0 chr4 18673772 18674066 -183654281 + L1PB4 LINE L1 5858 6155 -1 246 264 69 14 chr4 18674348 18674420 -183653927 - L2 LINE L2 -8 3264 3189 2342 85 0 10 chr4 18674458 18674753 -183653594 - AluSp SINE Alu -21 292 1 1408 235 128 42 chr4 18674991 18675562 -183652785 + L1ME2 LINE L1 5546 6334 0 660 290 85 43 chr4 18675603 18675894 -183652453 + L1MEd LINE L1 913 1190 -1300 1525 145 118 12 chr4 18675894 18676149 -183652198 + AluJo SINE Alu 18 299 -13 660 290 85 43 chr4 18676149 18676558 -183651789 + L1MEd LINE L1 1190 1749 -741 25 65 0 0 chr4 18676581 18676627 -183651720 + AT_rich Low_complexity Low_complexity 1 46 0 1562 157 36 39 chr4 18676647 18676952 -183651395 + AluJo SINE Alu 9 312 0 241 281 207 0 chr4 18677515 18677597 -183650750 + L2 LINE L2 3214 3312 -1 242 365 59 0 chr4 18677644 18677729 -183650618 + L2 LINE L2 3205 3294 -19 225 213 25 113 chr4 18678742 18678822 -183649525 + L2 LINE L2 3200 3272 0 223 327 71 26 chr4 18680342 18680455 -183647892 - MIR3 SINE MIR -78 130 13 1084 235 58 8 chr4 18681004 18681184 -183647163 + MER20B DNA MER1_type 283 481 -302 2121 147 0 0 chr4 18681184 18681490 -183646857 - AluSx SINE Alu -6 306 1 1084 235 58 8 chr4 18681490 18681569 -183646778 + MER20B DNA MER1_type 481 555 -228 * 1989 161 24 9 chr4 18681557 18681892 -183646455 + MER2 DNA MER2_type 6 345 0 244 196 178 56 chr4 18681953 18682060 -183646287 + MER20B DNA MER1_type 664 783 0 355 231 191 36 chr4 18682409 18682577 -183645770 - MIR SINE MIR -11 251 57 842 156 15 30 chr4 18682679 18682814 -183645533 - AluJo SINE Alu -177 135 3 307 254 24 71 chr4 18682903 18683029 -183645318 - L1ME4a LINE L1 -51 6070 5951 2073 95 42 18 chr4 18683106 18683391 -183644956 - AluSx SINE Alu -20 292 1 1902 125 62 0 chr4 18683396 18683684 -183644663 - AluSx SINE Alu -6 306 1 1023 171 0 0 chr4 18684238 18684390 -183643957 + FRAM SINE Alu 1 152 -14 207 0 0 0 chr4 18684393 18684416 -183643931 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 322 292 31 10 chr4 18685525 18685621 -183642726 + L2 LINE L2 2955 3052 -220 254 313 112 15 chr4 18686279 18686413 -183641934 - MER5A DNA MER1_type -41 148 2 715 255 102 18 chr4 18686630 18686963 -183641384 - Charlie7 DNA MER1_type -240 2372 2012 408 267 153 35 chr4 18687689 18687891 -183640456 - MLT1J2 LTR MaLR -157 293 68 1668 109 0 9 chr4 18687947 18688176 -183640171 - AluSc SINE Alu -19 290 64 216 0 0 0 chr4 18688247 18688271 -183640076 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1330 171 116 27 chr4 18688274 18688532 -183639815 - AluJo SINE Alu -31 281 1 520 211 105 9 chr4 18688602 18688716 -183639631 + L2 LINE L2 3189 3313 0 26 0 0 0 chr4 18688916 18688942 -183639405 + AT_rich Low_complexity Low_complexity 1 26 0 2179 227 108 55 chr4 18689324 18689507 -183638840 + L1ME3 LINE L1 5007 5179 -983 2033 119 3 55 chr4 18689507 18689818 -183638529 + AluSx SINE Alu 1 295 -17 2179 227 108 55 chr4 18689818 18689897 -183638450 + L1ME3 LINE L1 5179 5252 -910 700 191 15 44 chr4 18689897 18690033 -183638314 + FLAM_C SINE Alu 1 132 -1 2179 227 108 55 chr4 18690033 18690164 -183638183 + L1ME3 LINE L1 5252 5375 -787 317 61 0 20 chr4 18690164 18690213 -183638134 + (TTAAA)n Simple_repeat Simple_repeat 3 50 0 2179 227 108 55 chr4 18690213 18690366 -183637981 + L1ME3 LINE L1 5375 5518 -644 8028 26 10 1 chr4 18690366 18691382 -183636965 + L1PA4 LINE L1 5131 6154 -1 2179 227 108 55 chr4 18691382 18691923 -183636424 + L1ME3 LINE L1 5518 6162 0 2112 115 97 6 chr4 18692225 18692556 -183635791 - MER46B DNA MER2_type 0 236 1 2344 245 166 17 chr4 18693004 18693927 -183634420 - HAL1 LINE L1 -698 1809 750 625 319 125 12 chr4 18693991 18694327 -183634020 - HAL1 LINE L1 -1873 634 261 703 168 91 131 chr4 18694333 18694490 -183633857 + Charlie7 DNA MER1_type 1631 1772 -840 2006 115 11 4 chr4 18694490 18694768 -183633579 + AluSc SINE Alu 1 280 -29 703 168 91 131 chr4 18694768 18694907 -183633440 + Charlie7 DNA MER1_type 1772 1915 -697 22 0 0 0 chr4 18694946 18694968 -183633379 + AT_rich Low_complexity Low_complexity 1 22 0 846 214 0 19 chr4 18695037 18695191 -183633156 - FRAM SINE Alu -15 151 1 540 154 282 13 chr4 18695310 18695459 -183632888 - MER53 DNA DNA 0 189 1 201 74 0 0 chr4 18696366 18696393 -183631954 + (T)n Simple_repeat Simple_repeat 1 27 0 1539 137 49 8 chr4 18696407 18696670 -183631677 + AluJb SINE Alu 24 297 -15 307 276 13 0 chr4 18697336 18697412 -183630935 + L3 LINE CR1 1244 1320 -257 2422 70 20 0 chr4 18697929 18698227 -183630120 + AluSp SINE Alu 1 304 -9 2226 102 7 3 chr4 18699198 18699491 -183628856 - AluSx SINE Alu -18 294 1 2234 69 4 0 chr4 18699909 18700185 -183628162 + AluY SINE Alu 27 303 -8 189 74 0 0 chr4 18700702 18700729 -183627618 + (A)n Simple_repeat Simple_repeat 1 27 0 2153 129 0 0 chr4 18701092 18701386 -183626961 - AluSx SINE Alu -18 294 1 180 0 0 0 chr4 18703146 18703166 -183625181 + (T)n Simple_repeat Simple_repeat 1 20 0 277 259 168 0 chr4 18703371 18703502 -183624845 + L1ME LINE L1 3681 3833 -2313 1790 150 3 18 chr4 18703741 18704027 -183624320 + AluJo SINE Alu 1 282 -30 502 263 129 18 chr4 18704292 18704463 -183623884 - MIR SINE MIR -28 234 45 408 299 124 25 chr4 18704641 18705045 -183623302 + L1ME LINE L1 4509 4952 -1194 281 302 77 6 chr4 18705151 18705320 -183623027 + L1ME LINE L1 4988 5168 -978 336 268 119 49 chr4 18705438 18705652 -183622695 + L1ME LINE L1 5433 5660 -699 247 150 0 0 chr4 18705998 18706038 -183622309 + L2 LINE L2 3214 3253 -19 183 42 0 0 chr4 18706661 18706685 -183621662 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2357 77 3 3 chr4 18706808 18707108 -183621239 + AluSx SINE Alu 1 300 -12 231 137 118 0 chr4 18707206 18707257 -183621090 + L1ME LINE L1 5756 5812 -352 479 221 140 0 chr4 18707257 18707393 -183620954 + MIR SINE MIR 108 262 0 306 209 55 33 chr4 18707689 18707780 -183620567 - MER34 LTR ERV1 0 542 450 906 219 145 37 chr4 18707883 18708207 -183620140 - MER34C LTR ERV1 -226 359 1 23 54 0 0 chr4 18709259 18709296 -183619051 + GC_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr4 18711462 18711484 -183616863 + AT_rich Low_complexity Low_complexity 1 22 0 403 278 83 89 chr4 18711547 18711874 -183616473 - L1M4 LINE L1 -762 5384 5060 339 118 430 21 chr4 18712383 18712476 -183615871 + FLAM_C SINE Alu 1 131 -2 1089 178 105 40 chr4 18712558 18712805 -183615542 - AluJo SINE Alu -49 263 1 2094 133 3 0 chr4 18713599 18713885 -183614462 - AluSx SINE Alu -25 287 1 2127 143 12 12 chr4 18714149 18714484 -183613863 - MER1B DNA MER1_type -1 338 4 2076 75 75 0 chr4 18714914 18715179 -183613168 + AluSc SINE Alu 1 285 -24 814 213 129 52 chr4 18716434 18716744 -183611603 - MER58B DNA MER1_type -4 337 4 408 232 139 60 chr4 18717133 18717435 -183610912 - L1MC4a LINE L1 -1902 5906 5581 2468 68 0 0 chr4 18717465 18717761 -183610586 - AluSc SINE Alu -13 296 1 25 0 0 0 chr4 18718117 18718142 -183610205 + AT_rich Low_complexity Low_complexity 1 25 0 2464 76 0 3 chr4 18718381 18718685 -183609662 + AluY SINE Alu 1 303 -8 2031 134 3 10 chr4 18719519 18719825 -183608522 - AluSq SINE Alu -8 305 2 2173 104 13 7 chr4 18720252 18720551 -183607796 - AluSg SINE Alu -9 301 1 288 167 19 19 chr4 18720672 18720726 -183607621 - Tigger5 DNA MER2_type -2269 54 1 293 238 158 20 chr4 18722160 18722261 -183606086 + MIR SINE MIR 50 164 -98 461 290 83 10 chr4 18722407 18722600 -183605747 - L3 LINE CR1 -3 1574 1368 763 263 129 4 chr4 18724900 18725132 -183603215 - MIR SINE MIR -1 261 1 926 323 145 24 chr4 18725150 18725821 -183602526 - L2 LINE L2 -339 2975 2224 1969 153 17 0 chr4 18725867 18726162 -183602185 - AluSx SINE Alu -12 300 1 200 194 0 0 chr4 18726175 18726211 -183602136 + MIR SINE MIR 53 88 -174 201 149 191 0 chr4 18726588 18726635 -183601712 + MIR SINE MIR 152 207 -55 21 0 0 0 chr4 18726823 18726844 -183601503 + AT_rich Low_complexity Low_complexity 1 21 0 886 141 105 144 chr4 18726924 18727237 -183601110 - MER33 DNA MER1_type -14 310 10 328 276 155 17 chr4 18727802 18727918 -183600429 - L2 LINE L2 -2 3270 3139 910 198 71 89 chr4 18728087 18728174 -183600173 + MER33 DNA MER1_type 7 94 -2491 2017 142 10 3 chr4 18728174 18728483 -183599864 + AluJb SINE Alu 1 311 -1 910 198 71 89 chr4 18728483 18728719 -183599628 + MER33 DNA MER1_type 94 324 0 286 348 67 43 chr4 18728724 18728934 -183599413 - L2 LINE L2 -424 2890 2676 1059 283 99 33 chr4 18729389 18729956 -183598391 - L2 LINE L2 -2 3311 2710 1322 189 129 7 chr4 18729981 18730283 -183598064 - MER58B DNA MER1_type -1 340 2 1474 274 95 36 chr4 18730291 18730956 -183597391 - L2 LINE L2 -650 2664 1961 1231 131 0 6 chr4 18731163 18731339 -183597008 + AluSg SINE Alu 13 187 -123 1391 114 10 0 chr4 18731339 18731532 -183596815 + AluSp SINE Alu 101 295 -18 234 0 0 0 chr4 18731547 18731573 -183596774 + (TTG)n Simple_repeat Simple_repeat 2 27 0 21 57 0 0 chr4 18731617 18731652 -183596695 + AT_rich Low_complexity Low_complexity 1 35 0 23 33 0 0 chr4 18731684 18731714 -183596633 + AT_rich Low_complexity Low_complexity 1 30 0 26 50 0 0 chr4 18732169 18732209 -183596138 + AT_rich Low_complexity Low_complexity 1 40 0 857 199 23 23 chr4 18732652 18732868 -183595479 - L1PA2 LINE L1 -4 6151 5936 22 56 0 0 chr4 18732894 18732930 -183595417 + AT_rich Low_complexity Low_complexity 1 36 0 4034 183 61 21 chr4 18733244 18733275 -183595072 - L1MB5 LINE L1 -8 6166 6138 1688 144 58 0 chr4 18733275 18733553 -183594794 - AluJo SINE Alu -18 294 1 4034 183 61 21 chr4 18733553 18734720 -183593627 - L1MB5 LINE L1 -36 6138 4922 185 301 66 52 chr4 18736777 18736913 -183591434 - L2 LINE L2 -491 2823 2686 667 289 63 57 chr4 18737170 18737537 -183590810 - LTR16A LTR ERVL -58 392 24 249 279 78 26 chr4 18739279 18739433 -183588914 - L1ME4a LINE L1 -4 6117 5956 247 247 49 25 chr4 18741701 18741782 -183586565 + MER5A DNA MER1_type 100 182 -7 413 305 111 22 chr4 18744324 18744550 -183583797 - MIR SINE MIR -7 255 5 22 0 0 0 chr4 18745657 18745679 -183582668 + AT_rich Low_complexity Low_complexity 1 22 0 1214 144 0 6 chr4 18746424 18746605 -183581742 - AluJo SINE Alu -25 287 108 9241 44 2 0 chr4 18746607 18747732 -183580615 + L1P LINE L1 7 1133 -5013 7594 26 5 0 chr4 18747732 18749353 -183578994 + L1PA3 LINE L1 4531 6155 0 904 274 105 11 chr4 18749521 18750044 -183578303 - L1MC4a LINE L1 -344 5822 5320 329 252 78 40 chr4 18750370 18750515 -183577832 + MIR SINE MIR 45 192 -60 185 289 0 0 chr4 18751063 18751108 -183577239 - L2 LINE L2 -18 3254 3210 207 0 0 0 chr4 18751111 18751134 -183577213 + (T)n Simple_repeat Simple_repeat 1 23 0 264 246 18 0 chr4 18751166 18751223 -183577124 - MIR SINE MIR -83 125 68 282 322 199 7 chr4 18752207 18752353 -183575994 + MIR SINE MIR 46 219 -43 231 290 0 14 chr4 18752360 18752429 -183575918 + MIR SINE MIR 195 262 0 265 330 31 10 chr4 18752893 18752990 -183575357 + MIR SINE MIR 8 106 -156 466 231 91 28 chr4 18753805 18753948 -183574399 + MLT1H LTR MaLR 382 533 -16 641 330 138 32 chr4 18753974 18754287 -183574060 + L2 LINE L2 1640 1918 -1396 1152 203 132 26 chr4 18754287 18754636 -183573711 + MLT1B LTR MaLR 1 386 -4 641 330 138 32 chr4 18754636 18754859 -183573488 + L2 LINE L2 1918 2233 -1081 286 333 167 10 chr4 18754881 18755085 -183573262 + L2 LINE L2 3028 3263 -50 247 220 17 0 chr4 18755097 18755156 -183573191 + L1MEc LINE L1 10 69 -6327 577 275 125 72 chr4 18755176 18755576 -183572771 + L1MEc LINE L1 216 636 -5760 463 221 42 0 chr4 18755579 18755674 -183572673 - MER20 DNA MER1_type 0 219 121 885 234 43 0 chr4 18755674 18755858 -183572489 - MER20 DNA MER1_type -27 192 1 2817 280 65 13 chr4 18755862 18756504 -183571843 + L1MEc LINE L1 636 1243 -5153 2020 94 17 28 chr4 18756504 18756819 -183571528 + AluSp SINE Alu 1 312 0 2817 280 65 13 chr4 18756819 18757074 -183571273 + L1MEc LINE L1 1243 1483 -4913 2030 172 17 0 chr4 18757074 18757429 -183570918 + MER47A DNA MER2_type 4 364 -2 2817 280 65 13 chr4 18757429 18757807 -183570540 + L1MEc LINE L1 1483 1979 -4417 * 5423 141 58 41 chr4 18757805 18758284 -183570063 + L1PA15 LINE L1 4276 4745 -1420 2130 124 86 12 chr4 18758284 18758623 -183569724 - THE1B LTR MaLR 0 364 1 11669 83 9 5 chr4 18758623 18760196 -183568151 - THE1B-int LTR MaLR 0 1580 1 2047 135 72 26 chr4 18760196 18760544 -183567803 - THE1B LTR MaLR 0 364 1 5423 141 58 41 chr4 18760544 18761095 -183567252 + L1PA15 LINE L1 4745 5285 -880 2155 119 0 0 chr4 18761095 18761389 -183566958 + AluSx SINE Alu 1 294 -18 5423 141 58 41 chr4 18761389 18762205 -183566142 + L1PA15 LINE L1 5285 6160 -5 2474 240 57 23 chr4 18762217 18762295 -183566052 + L1MEc LINE L1 1995 2069 -4146 1543 160 86 0 chr4 18762295 18762563 -183565784 - AluJb SINE Alu -21 291 1 2474 240 57 23 chr4 18762563 18763440 -183564907 + L1MEc LINE L1 2069 2948 -3267 756 140 9 0 chr4 18763440 18763554 -183564793 - FLAM_C SINE Alu -28 115 1 694 194 26 0 chr4 18763562 18763717 -183564630 + L1MEc LINE L1 2946 3104 -3111 607 166 191 0 chr4 18763755 18763912 -183564435 + MER5A DNA MER1_type 1 187 -2 485 320 77 78 chr4 18763936 18764554 -183563793 + L2 LINE L2 2652 3271 -1 928 200 43 11 chr4 18765379 18765564 -183562783 - MER58A DNA MER1_type -3 221 31 862 298 147 45 chr4 18766935 18767896 -183560451 + L2 LINE L2 1293 2351 -963 420 169 0 0 chr4 18768239 18768304 -183560043 - AluJ SINE Alu -52 260 196 392 173 13 38 chr4 18768304 18768400 -183559947 - AluJo SINE Alu -144 158 86 241 298 23 76 chr4 18768443 18768574 -183559773 + L2 LINE L2 2990 3113 -159 215 226 0 57 chr4 18768802 18768855 -183559492 + L2 LINE L2 3255 3304 -9 23 97 0 0 chr4 18769216 18769288 -183559059 + AT_rich Low_complexity Low_complexity 1 72 0 1413 104 25 67 chr4 18770377 18770617 -183557730 + MER30 DNA MER1_type 1 230 0 24 0 0 0 chr4 18771174 18771198 -183557149 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr4 18776829 18776857 -183551490 + AT_rich Low_complexity Low_complexity 1 28 0 194 33 67 0 chr4 18778660 18778690 -183549657 + T-rich Low_complexity Low_complexity 2 33 0 22 0 0 0 chr4 18779220 18779242 -183549105 + AT_rich Low_complexity Low_complexity 1 22 0 36 0 0 0 chr4 18780992 18781028 -183547319 + AT_rich Low_complexity Low_complexity 1 36 0 309 174 0 0 chr4 18781695 18781764 -183546583 + (CA)n Simple_repeat Simple_repeat 2 70 0 22 56 0 0 chr4 18783352 18783388 -183544959 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr4 18783783 18783804 -183544543 + AT_rich Low_complexity Low_complexity 1 21 0 30 0 0 0 chr4 18784083 18784113 -183544234 + AT_rich Low_complexity Low_complexity 1 30 0 971 298 67 28 chr4 18785224 18785891 -183542456 - L2 LINE L2 -9 3304 2620 589 301 58 108 chr4 18785886 18786265 -183542082 + L2 LINE L2 2909 3268 -4 * 300 345 113 47 chr4 18786475 18786794 -183541553 + L2 LINE L2 2887 3226 -46 302 277 71 0 chr4 18788117 18788258 -183540089 - L1MC/D LINE L1 -2028 5780 5630 348 273 39 31 chr4 18789177 18789305 -183539042 - MIR SINE MIR -14 248 120 537 185 9 9 chr4 18789320 18789428 -183538919 + FLAM_A SINE Alu 31 138 -4 269 274 218 6 chr4 18789428 18789607 -183538740 + L1ME4a LINE L1 5573 5789 -332 304 224 77 84 chr4 18789762 18789905 -183538442 + L1ME4a LINE L1 5880 6021 -100 2427 87 0 3 chr4 18790259 18790569 -183537778 - AluSx SINE Alu -1 311 3 344 263 152 70 chr4 18791114 18791285 -183537062 - L1ME3A LINE L1 -31 6139 5955 287 308 11 0 chr4 18791289 18791380 -183536967 + L1ME LINE L1 5610 5701 -420 2193 117 0 0 chr4 18791861 18792160 -183536187 - AluSx SINE Alu -13 299 1 419 172 0 86 chr4 18792186 18792279 -183536068 - Tigger5 DNA MER2_type -7 2316 2232 326 200 0 0 chr4 18792276 18792331 -183536016 - Tigger5 DNA MER2_type -2268 55 1 * 1635 196 138 22 chr4 18792422 18792880 -183535467 - Charlie1b DNA MER1_type -8 515 5 234 283 193 7 chr4 18792894 18793039 -183535308 - L1MC4 LINE L1 -547 7495 7324 203 61 30 0 chr4 18793071 18793104 -183535243 + (TA)n Simple_repeat Simple_repeat 1 34 0 2558 131 86 22 chr4 18793111 18793659 -183534688 - L1MA6 LINE L1 0 6300 5718 3297 184 45 3 chr4 18793659 18794310 -183534037 - L1MB8 LINE L1 -61 6117 5440 2059 119 7 0 chr4 18794310 18794643 -183533704 - AluSq SINE Alu 0 335 1 4538 89 50 51 chr4 18794660 18795420 -183532927 - L1MA3 LINE L1 -1 6304 5546 1162 269 129 48 chr4 18795433 18797229 -183531118 - L1MC4 LINE L1 -762 7199 5263 328 345 102 35 chr4 18797380 18797661 -183530686 - L2 LINE L2 -280 3033 2741 1422 113 18 5 chr4 18797871 18798092 -183530255 + Tigger4(Zombi) DNA MER2_type 2506 2729 -2 527 344 27 54 chr4 18798388 18798612 -183529735 + L2 LINE L2 2889 3106 -207 878 257 67 6 chr4 18798659 18799001 -183529346 + L1MEd LINE L1 895 1257 -4862 201 213 21 0 chr4 18799417 18799464 -183528883 + A-rich Low_complexity Low_complexity 1 48 0 184 409 151 5 chr4 18800139 18800325 -183528022 - L2 LINE L2 -379 2935 2723 221 226 94 0 chr4 18801131 18801184 -183527163 + L2 LINE L2 1915 1972 -1342 22 0 0 0 chr4 18801195 18801217 -183527130 + AT_rich Low_complexity Low_complexity 1 22 0 199 349 45 0 chr4 18801220 18801286 -183527061 - L2 LINE L2 -37 3276 3208 265 342 121 9 chr4 18801791 18802022 -183526325 + L3 LINE CR1 1084 1340 -237 191 236 73 0 chr4 18802035 18802090 -183526257 + L3 LINE CR1 1207 1265 -312 230 356 10 20 chr4 18802195 18802296 -183526051 + L3 LINE CR1 1453 1552 -25 300 331 139 7 chr4 18802552 18803150 -183525197 - L1MC4 LINE L1 -1082 5064 4388 280 297 194 3 chr4 18803301 18803584 -183524763 - L1MC4 LINE L1 -2158 3988 3652 1054 240 100 14 chr4 18803775 18804134 -183524213 + Charlie7 DNA MER1_type 334 723 -1889 204 345 0 12 chr4 18804393 18804477 -183523870 + L2 LINE L2 2808 2890 -424 344 152 76 0 chr4 18804505 18804584 -183523763 + Charlie7 DNA MER1_type 548 632 -1980 2403 75 10 0 chr4 18804749 18805042 -183523305 - AluSc SINE Alu -13 296 1 568 257 84 26 chr4 18805078 18805304 -183523043 - L3 LINE CR1 -118 1459 1221 21 0 0 0 chr4 18805769 18805790 -183522557 + AT_rich Low_complexity Low_complexity 1 21 0 347 311 72 48 chr4 18807136 18807192 -183521155 - MER5B DNA MER1_type -7 171 118 1988 119 3 13 chr4 18807192 18807529 -183520818 + AluSc SINE Alu 1 309 0 347 311 72 48 chr4 18807529 18807639 -183520708 - MER5B DNA MER1_type -60 118 1 27 0 0 0 chr4 18807745 18807772 -183520575 + AT_rich Low_complexity Low_complexity 1 27 0 25 51 0 0 chr4 18807913 18807952 -183520395 + AT_rich Low_complexity Low_complexity 1 39 0 228 283 0 33 chr4 18808177 18808237 -183520110 - MIR SINE MIR -184 78 21 897 136 15 80 chr4 18808380 18808579 -183519768 - MER30B DNA MER1_type -4 186 1 2211 100 3 7 chr4 18808781 18809080 -183519267 - AluSp SINE Alu -15 298 1 24 53 0 0 chr4 18809533 18809571 -183518776 + AT_rich Low_complexity Low_complexity 1 38 0 22 35 0 0 chr4 18810150 18810179 -183518168 + AT_rich Low_complexity Low_complexity 1 29 0 25 51 0 0 chr4 18810607 18810646 -183517701 + AT_rich Low_complexity Low_complexity 1 39 0 416 231 137 8 chr4 18811507 18811624 -183516723 + MER46C DNA MER2_type 172 303 -35 489 267 25 91 chr4 18811735 18811965 -183516382 + MIR SINE MIR 42 260 -2 2036 127 16 0 chr4 18812049 18812372 -183515975 + HSMAR2 DNA Mariner 1 328 -974 6272 124 32 3 chr4 18813790 18814749 -183513598 + HSMAR2 DNA Mariner 315 1301 -1 441 262 51 50 chr4 18815603 18815796 -183512551 + MLT1F LTR MaLR 14 208 -382 326 350 0 8 chr4 18815800 18815917 -183512430 + CT-rich Low_complexity Low_complexity 1 116 0 713 280 123 8 chr4 18815944 18816212 -183512135 + MLT1F LTR MaLR 236 534 -8 233 308 0 0 chr4 18816216 18816294 -183512053 + MLT1F-int LTR MaLR 1 78 -1293 396 272 44 7 chr4 18816457 18816593 -183511754 + MLT1F-int LTR MaLR 399 539 -832 2104 137 42 65 chr4 18816593 18816689 -183511658 + MSTB LTR MaLR 1 98 -328 2110 172 69 14 chr4 18816689 18817126 -183511221 + LOR1b LTR ERV1 1 461 0 2104 137 42 65 chr4 18817126 18817392 -183510955 + MSTB LTR MaLR 98 356 -70 1747 161 45 0 chr4 18817392 18817684 -183510663 - AluSx SINE Alu -7 305 1 2104 137 42 65 chr4 18817684 18817721 -183510626 + MSTB LTR MaLR 356 392 -34 1433 126 28 0 chr4 18817721 18817936 -183510411 - AluSg/x SINE Alu -6 304 84 197 33 33 0 chr4 18817937 18817967 -183510380 + (TTTTG)n Simple_repeat Simple_repeat 1 31 0 1969 108 26 0 chr4 18817967 18818236 -183510111 - AluSx SINE Alu -31 281 6 244 191 0 0 chr4 18818238 18818280 -183510067 + MSTB LTR MaLR 387 428 0 300 254 0 0 chr4 18818281 18818352 -183509995 + MLT1F-int LTR MaLR 536 606 -765 485 144 8 136 chr4 18818528 18818660 -183509687 + L1M4 LINE L1 101 215 -6327 324 0 0 0 chr4 18818689 18818725 -183509622 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 3211 219 55 24 chr4 18818770 18819712 -183508635 + L1M4 LINE L1 784 1836 -4808 1061 289 24 17 chr4 18819735 18820199 -183508148 + L1M4 LINE L1 3728 4194 -2450 897 142 34 0 chr4 18820223 18820371 -183507976 - Tigger1 DNA MER2_type -14 2404 2252 1265 169 59 24 chr4 18820382 18820637 -183507710 + MER21A LTR ERV1 1 264 -667 2059 164 221 15 chr4 18820642 18821098 -183507249 + MER21A LTR ERV1 376 925 -6 6173 116 19 22 chr4 18821105 18821760 -183506587 - Tigger1 DNA MER2_type -175 2243 1590 2073 114 3 32 chr4 18821760 18822075 -183506272 - AluSc SINE Alu -3 306 1 6173 116 19 22 chr4 18822075 18822397 -183505950 - Tigger1 DNA MER2_type -828 1590 1269 1911 167 63 35 chr4 18822398 18822929 -183505418 + MLT2A2 LTR ERVL 1 554 0 6135 143 44 43 chr4 18822929 18823831 -183504516 + HERVL-A2 LTR ERVL 1 901 -4863 180 196 87 120 chr4 18823831 18823923 -183504424 + MER5C DNA MER1_type 10 98 -226 6135 143 44 43 chr4 18823923 18824109 -183504238 + HERVL-A2 LTR ERVL 901 1085 -4679 2123 109 0 0 chr4 18824109 18824385 -183503962 + AluSx SINE Alu 1 276 -36 6135 143 44 43 chr4 18824385 18824608 -183503739 + HERVL-A2 LTR ERVL 1085 1401 -4363 381 89 0 0 chr4 18824612 18824668 -183503679 - HERVL LTR ERVL -1725 3929 3874 13797 94 14 7 chr4 18824696 18826333 -183502014 + HERVL-A2 LTR ERVL 3741 5395 -259 2357 88 0 31 chr4 18826333 18826652 -183501695 + AluSc SINE Alu 1 309 0 13797 94 14 7 chr4 18826652 18826914 -183501433 + HERVL-A2 LTR ERVL 5395 5654 0 2062 176 31 52 chr4 18826914 18827492 -183500855 + MLT2A2 LTR ERVL 1 554 0 * 7060 154 43 19 chr4 18827492 18828731 -183499616 - Tigger1 DNA MER2_type -1146 1272 3 5330 200 38 56 chr4 18828746 18828867 -183499480 + L1M4 LINE L1 4234 4356 -2326 1746 172 0 20 chr4 18828867 18829170 -183499177 + AluJb SINE Alu 1 297 -15 5330 200 38 56 chr4 18829170 18830962 -183497385 + L1M4 LINE L1 4356 6105 -577 585 216 0 9 chr4 18830963 18831079 -183497268 + FLAM_A SINE Alu 1 115 -18 371 258 30 23 chr4 18831103 18831235 -183497112 - L1P LINE L1 -1989 4157 4025 329 309 155 10 chr4 18831281 18831475 -183496872 - L1MDa LINE L1 -2230 4196 3975 284 118 59 0 chr4 18831482 18831533 -183496814 + L1M4 LINE L1 5400 5453 -725 524 300 90 50 chr4 18831588 18832597 -183495750 - L1MDa LINE L1 -2504 3922 2873 816 259 10 5 chr4 18833398 18833591 -183494756 + MER58A DNA MER1_type 26 219 -5 362 309 97 26 chr4 18833597 18833908 -183494439 - HAL1b LINE L1 -731 617 285 351 256 80 144 chr4 18833947 18834426 -183493921 - L1MDa LINE L1 -1173 1614 976 1172 205 39 11 chr4 18834841 18835124 -183493223 + L1MC2 LINE L1 6025 6315 -29 2073 166 35 53 chr4 18836123 18836557 -183491790 + MSTB LTR MaLR 1 426 0 205 365 61 50 chr4 18837042 18837223 -183491124 - MIR3 SINE MIR -7 201 19 27 49 0 0 chr4 18838634 18838675 -183489672 + AT_rich Low_complexity Low_complexity 1 41 0 2433 72 0 7 chr4 18838742 18839049 -183489298 - AluSp SINE Alu -8 305 1 2406 76 13 0 chr4 18839152 18839455 -183488892 - AluSp SINE Alu -6 307 1 1282 221 43 37 chr4 18839770 18840285 -183488062 + L1ME LINE L1 5236 5597 -567 430 193 0 47 chr4 18840636 18840807 -183487540 + (TA)n Simple_repeat Simple_repeat 1 163 0 235 205 115 0 chr4 18840810 18840888 -183487459 + L1MC4 LINE L1 6617 6703 -1339 240 130 0 0 chr4 18840894 18840940 -183487407 - LTR66 LTR ERVL -171 439 394 1181 221 70 92 chr4 18841044 18841542 -183486805 - Charlie4a DNA MER1_type -3 505 19 1494 85 0 0 chr4 18841837 18842025 -183486322 + AluY SINE Alu 1 188 -123 226 213 0 33 chr4 18842026 18842087 -183486260 + (TA)n Simple_repeat Simple_repeat 1 59 0 959 126 0 0 chr4 18842087 18842214 -183486133 + AluY SINE Alu 168 294 -17 2189 143 6 18 chr4 18843514 18843856 -183484491 + MER1B DNA MER1_type 2 339 0 704 83 16 25 chr4 18844961 18845082 -183483265 - L1MA2 LINE L1 -158 6146 6027 * 1547 157 69 50 chr4 18845068 18845431 -183482916 - L1MC4a LINE L1 -728 7080 6711 687 138 0 9 chr4 18845533 18845642 -183482705 - MLT1A1 LTR MaLR 0 365 258 3478 172 28 77 chr4 18847617 18848438 -183479909 + L1MA7 LINE L1 5509 6289 -2 246 327 133 0 chr4 18849092 18849205 -183479142 - L2 LINE L2 -7 3265 3138 253 314 48 48 chr4 18849527 18849737 -183478610 - L2 LINE L2 -1201 2113 1904 550 228 118 121 chr4 18852216 18852572 -183475775 + L2 LINE L2 2958 3312 -1 2456 50 0 0 chr4 18853157 18853457 -183474890 - AluY SINE Alu -11 300 1 4063 131 0 29 chr4 18853465 18854153 -183474194 - L1PA13 LINE L1 -5 6158 5491 2678 299 126 22 chr4 18854459 18854624 -183473723 - L2 LINE L2 -4 3309 3163 2324 64 0 0 chr4 18854624 18854940 -183473407 + AluY SINE Alu 1 316 0 2678 299 126 22 chr4 18854940 18856157 -183472190 - L2 LINE L2 -150 3163 1789 412 241 129 41 chr4 18856158 18856328 -183472019 - L2 LINE L2 -12 3301 3117 643 357 33 7 chr4 18856420 18856692 -183471655 - L2 LINE L2 -2111 1203 925 5687 126 42 11 chr4 18856706 18857675 -183470672 + L1MA4A LINE L1 5302 6300 -3 766 318 193 12 chr4 18857686 18858324 -183470023 - L2 LINE L2 -2405 909 157 392 252 70 9 chr4 18859507 18859622 -183468725 - L2 LINE L2 0 3313 3192 248 245 137 20 chr4 18860167 18860269 -183468078 + MIR SINE MIR 101 214 -48 533 216 45 0 chr4 18861385 18861496 -183466851 - FLAM_A SINE Alu -17 116 1 21 0 0 0 chr4 18863874 18863895 -183464452 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr4 18864358 18864393 -183463954 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr4 18865244 18865266 -183463081 + AT_rich Low_complexity Low_complexity 1 22 0 272 313 125 0 chr4 18866426 18866538 -183461809 + MIR SINE MIR 63 188 -74 300 226 108 0 chr4 18866839 18866932 -183461415 - L1ME4a LINE L1 -58 6063 5961 973 240 39 35 chr4 18866952 18867290 -183461057 + L1MC2 LINE L1 3199 3537 -2609 4266 182 85 8 chr4 18867377 18868306 -183460041 + L1MC2 LINE L1 5334 7995 0 278 234 32 43 chr4 18868378 18868472 -183459875 - L1ME4a LINE L1 -2007 5801 5709 273 167 3 6 chr4 18868526 18868586 -183459761 + MADE1 DNA Mariner 1 49 -31 2324 109 3 0 chr4 18868588 18868899 -183459448 - AluSq SINE Alu -1 312 1 344 111 0 0 chr4 18868943 18868997 -183459350 - MADE1 DNA Mariner -26 54 1 1021 196 80 5 chr4 18869334 18869644 -183458703 - MER58B DNA MER1_type 0 341 1 986 172 48 5 chr4 18870789 18870998 -183457349 + AluSx SINE Alu 1 218 -94 22 35 0 0 chr4 18872951 18872980 -183455367 + AT_rich Low_complexity Low_complexity 1 29 0 246 263 12 12 chr4 18873013 18873093 -183455254 - L1ME4a LINE L1 -71 6050 5971 25 0 0 0 chr4 18873250 18873275 -183455072 + AT_rich Low_complexity Low_complexity 1 25 0 26 30 0 0 chr4 18873612 18873645 -183454702 + AT_rich Low_complexity Low_complexity 1 33 0 22 35 0 0 chr4 18873692 18873721 -183454626 + AT_rich Low_complexity Low_complexity 1 29 0 244 198 52 52 chr4 18874269 18874385 -183453962 + (TTTAA)n Simple_repeat Simple_repeat 1 116 0 28 105 0 0 chr4 18874453 18874558 -183453789 + AT_rich Low_complexity Low_complexity 1 105 0 24 0 0 0 chr4 18874638 18874662 -183453685 + AT_rich Low_complexity Low_complexity 1 24 0 350 288 53 12 chr4 18875609 18875779 -183452568 + MER104 DNA MER2_type 4 180 0 227 287 73 20 chr4 18876068 18876218 -183452129 - L1MEd LINE L1 -4992 1127 970 459 234 63 13 chr4 18876251 18876409 -183451938 - L1ME1 LINE L1 -5 6161 5996 2177 249 104 34 chr4 18876437 18877238 -183451109 - L1MEc LINE L1 -2454 3761 2869 2186 110 3 3 chr4 18877238 18877539 -183450808 - AluSx SINE Alu -11 301 1 2177 249 104 34 chr4 18877539 18877776 -183450571 - L1MEc LINE L1 -3346 2869 2650 1037 253 89 21 chr4 18877793 18878371 -183449976 - L1MEc LINE L1 -3667 2548 1980 21 71 0 0 chr4 18878404 18878446 -183449901 + AT_rich Low_complexity Low_complexity 1 42 0 329 299 86 33 chr4 18878549 18878793 -183449554 - L1MEc LINE L1 -4755 1641 1385 1026 207 173 95 chr4 18878849 18879836 -183448511 - L1ME1 LINE L1 -187 5977 4906 938 350 65 73 chr4 18879827 18880157 -183448190 - L1MEc LINE L1 -5370 1026 695 * 1256 199 67 11 chr4 18880157 18880439 -183447908 + AluJo SINE Alu 1 298 -14 938 350 65 73 chr4 18880439 18880859 -183447488 - L1MEc LINE L1 -5701 695 283 1890 36 76 0 chr4 18880859 18881108 -183447239 - L1PA4 LINE L1 0 6155 5888 938 350 65 73 chr4 18881108 18881354 -183446993 - L1MEc LINE L1 -6113 283 37 23 54 0 0 chr4 18881462 18881499 -183446848 + AT_rich Low_complexity Low_complexity 1 37 0 1552 214 84 41 chr4 18881679 18882142 -183446205 + MLT1D LTR MaLR 22 504 -1 1922 143 56 6 chr4 18882628 18882949 -183445398 + MER1B DNA MER1_type 1 337 0 360 303 119 27 chr4 18883010 18883380 -183444967 - L1MC/D LINE L1 -2005 5803 5400 1278 159 99 44 chr4 18883419 18883671 -183444676 + AluJb SINE Alu 1 266 -46 18669 200 17 7 chr4 18883688 18884044 -183444303 - L1PA13 LINE L1 -2 6864 6513 414 0 0 0 chr4 18884044 18884090 -183444257 + (TG)n Simple_repeat Simple_repeat 2 47 0 18669 200 17 7 chr4 18884090 18888721 -183439626 - L1PA13 LINE L1 -353 6513 1852 240 245 109 34 chr4 18888723 18888870 -183439477 - L1MC/D LINE L1 -815 5331 5174 2660 176 121 3 chr4 18889159 18889891 -183438456 - L1MB7 LINE L1 -11 6173 5184 1952 110 75 23 chr4 18889896 18890242 -183438105 + THE1B LTR MaLR 1 364 0 882 183 39 22 chr4 18890242 18890422 -183437925 - AluJo SINE Alu -34 278 96 2042 115 10 0 chr4 18890649 18890937 -183437410 + AluSx SINE Alu 1 291 -21 1176 202 143 75 chr4 18891666 18892042 -183436305 - MLT1E3 LTR MaLR 0 624 210 2409 66 0 3 chr4 18892042 18892344 -183436003 - AluY SINE Alu -10 301 1 1176 202 143 75 chr4 18892344 18892422 -183435925 - MLT1E3 LTR MaLR -414 210 139 288 289 0 0 chr4 18892513 18892589 -183435758 - Charlie7 DNA MER1_type -1949 663 588 25 0 0 0 chr4 18893044 18893069 -183435278 + AT_rich Low_complexity Low_complexity 1 25 0 2086 138 47 14 chr4 18894016 18894379 -183433968 - THE1C LTR MaLR 0 375 1 275 348 28 35 chr4 18894924 18895065 -183433282 - L2 LINE L2 -241 3031 2892 23 24 0 24 chr4 18895133 18895157 -183433190 + AT_rich Low_complexity Low_complexity 1 25 -15 1992 116 10 10 chr4 18895157 18895450 -183432897 - AluSx SINE Alu -19 293 1 23 24 0 24 chr4 18895450 18895466 -183432881 + AT_rich Low_complexity Low_complexity 25 40 0 231 355 113 38 chr4 18895557 18895948 -183432399 - L2 LINE L2 -498 2816 2397 244 233 196 38 chr4 18896610 18896743 -183431604 - L2 LINE L2 -2 3311 3158 320 309 122 7 chr4 18896745 18896884 -183431463 + L2 LINE L2 3156 3310 -3 518 212 88 0 chr4 18897312 18897425 -183430922 + MER20 DNA MER1_type 95 217 -2 233 231 118 91 chr4 18897769 18897955 -183430392 + MIR SINE MIR 29 219 -43 2988 122 160 29 chr4 18899874 18900635 -183427712 - Tigger3b DNA MER2_type -1803 1226 566 1687 177 13 3 chr4 18900635 18900935 -183427412 + AluJb SINE Alu 4 306 -6 342 67 0 0 chr4 18900935 18900980 -183427367 + (TA)n Simple_repeat Simple_repeat 2 46 0 2988 122 160 29 chr4 18900980 18901140 -183427207 - Tigger3b DNA MER2_type -2463 566 428 2262 67 7 3 chr4 18901140 18901439 -183426908 + AluY SINE Alu 1 300 -11 2988 122 160 29 chr4 18901439 18901558 -183426789 - Tigger3b DNA MER2_type -2601 428 2 215 186 70 0 chr4 18902137 18902180 -183426167 - L2 LINE L2 0 3313 3268 1129 243 116 32 chr4 18902446 18902879 -183425468 + L1ME3A LINE L1 5685 6153 -17 896 212 0 0 chr4 18902993 18903158 -183425189 + FRAM SINE Alu 1 165 -1 315 234 99 54 chr4 18903180 18903291 -183425056 + MIR SINE MIR 147 262 0 181 442 18 6 chr4 18903346 18903511 -183424836 - L2 LINE L2 -459 2855 2689 200 347 42 0 chr4 18903660 18903732 -183424615 - MIR SINE MIR -159 103 29 21 36 0 0 chr4 18903802 18903830 -183424517 + AT_rich Low_complexity Low_complexity 1 28 0 205 321 0 0 chr4 18903868 18903949 -183424398 + (TA)n Simple_repeat Simple_repeat 2 82 0 24 53 0 0 chr4 18904602 18904640 -183423707 + AT_rich Low_complexity Low_complexity 1 38 0 407 327 170 28 chr4 18905128 18905492 -183422855 - L2 LINE L2 -560 2754 2339 401 57 0 0 chr4 18905496 18905549 -183422798 - MADE1 DNA Mariner 0 80 28 2107 164 28 17 chr4 18906236 18906596 -183421751 - THE1B LTR MaLR 0 364 1 11179 92 20 13 chr4 18906596 18906896 -183421451 - THE1B-int LTR MaLR 0 1580 1284 2214 96 17 3 chr4 18906896 18907187 -183421160 - AluSq SINE Alu -18 295 1 11179 92 20 13 chr4 18907187 18908455 -183419892 - THE1B-int LTR MaLR -296 1284 1 2286 136 28 17 chr4 18908455 18908815 -183419532 - THE1B LTR MaLR 0 364 1 315 258 32 32 chr4 18909077 18909170 -183419177 + L2 LINE L2 2669 2761 -553 21 0 0 0 chr4 18909292 18909313 -183419034 + AT_rich Low_complexity Low_complexity 1 21 0 737 251 64 5 chr4 18910500 18910703 -183417644 + MIR SINE MIR 48 262 0 283 232 192 0 chr4 18910887 18911012 -183417335 - L1MC4 LINE L1 -141 7901 7753 * 685 219 202 8 chr4 18911010 18911248 -183417099 - L1MC4 LINE L1 -1278 6764 6481 22 0 0 0 chr4 18911986 18912008 -183416339 + AT_rich Low_complexity Low_complexity 1 22 0 495 186 0 0 chr4 18912331 18912433 -183415914 + (TATG)n Simple_repeat Simple_repeat 2 103 0 2162 94 3 11 chr4 18912434 18912721 -183415626 - AluSx SINE Alu -27 285 1 21 0 0 0 chr4 18913394 18913415 -183414932 + AT_rich Low_complexity Low_complexity 1 21 0 1005 205 93 0 chr4 18913616 18913821 -183414526 + MER58A DNA MER1_type 1 224 0 770 289 81 78 chr4 18914842 18915409 -183412938 + L2 LINE L2 1689 2257 -1057 1938 138 17 0 chr4 18915787 18916078 -183412269 - AluSx SINE Alu -16 296 1 516 290 172 0 chr4 18918148 18918369 -183409978 - MIR SINE MIR -1 261 3 675 188 196 30 chr4 18918488 18918766 -183409581 + MER33 DNA MER1_type 1 363 0 2842 215 117 26 chr4 18918910 18920053 -183408294 + L1MC4 LINE L1 6707 8042 0 244 238 0 48 chr4 18920829 18920892 -183407455 + (CATATA)n Simple_repeat Simple_repeat 3 62 0 1613 121 9 0 chr4 18921100 18921331 -183407016 + AluSg/x SINE Alu 74 306 -6 205 161 0 0 chr4 18922712 18922743 -183405604 + (TG)n Simple_repeat Simple_repeat 2 32 0 21 89 0 0 chr4 18922964 18923020 -183405327 + GC_rich Low_complexity Low_complexity 1 56 0 26 0 0 0 chr4 18923418 18923444 -183404903 + GC_rich Low_complexity Low_complexity 1 26 0 24 32 0 0 chr4 18923531 18923562 -183404785 + GC_rich Low_complexity Low_complexity 1 31 0 306 73 0 0 chr4 18923661 18923702 -183404645 + (CGG)n Simple_repeat Simple_repeat 3 43 0 230 271 8 82 chr4 18924738 18924860 -183403487 + L2 LINE L2 3156 3268 -4 894 266 76 58 chr4 18925424 18925819 -183402528 - MLT1I LTR MaLR -3 406 5 224 91 23 0 chr4 18926040 18926084 -183402263 + (TC)n Simple_repeat Simple_repeat 2 46 0 216 67 0 0 chr4 18926084 18926114 -183402233 + (CA)n Simple_repeat Simple_repeat 1 30 0 1813 199 50 11 chr4 18926143 18926524 -183401823 - MSTD LTR MaLR 0 396 1 422 251 87 135 chr4 18926723 18927070 -183401277 - MLT1I LTR MaLR 0 409 80 1172 266 87 42 chr4 18927073 18927592 -183400755 - MLT1H LTR MaLR 0 549 8 2336 102 0 0 chr4 18927955 18928258 -183400089 + AluSq SINE Alu 1 303 -10 280 264 73 9 chr4 18928400 18928510 -183399837 - MLT1G LTR MaLR 0 590 433 24 0 0 0 chr4 18929271 18929295 -183399052 + AT_rich Low_complexity Low_complexity 1 24 0 588 309 39 0 chr4 18930468 18930649 -183397698 - MIR3 SINE MIR -5 203 16 354 280 6 95 chr4 18930683 18930851 -183397496 - MIR SINE MIR -59 203 51 23 33 0 0 chr4 18932067 18932097 -183396250 + AT_rich Low_complexity Low_complexity 1 30 0 1508 106 59 75 chr4 18932247 18932569 -183395778 + THE1C LTR MaLR 4 320 -55 479 108 0 155 chr4 18932584 18932713 -183395634 - MSTA LTR MaLR -319 109 1 486 324 134 56 chr4 18932802 18933123 -183395224 + HAL1 LINE L1 306 651 -1856 2245 259 111 37 chr4 18933125 18934247 -183394100 + HAL1 LINE L1 743 1947 -560 242 235 39 0 chr4 18934375 18934426 -183393921 + L2 LINE L2 3205 3257 -15 186 103 0 0 chr4 18934428 18934457 -183393890 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 241 203 29 43 chr4 18934488 18934557 -183393790 + L2 LINE L2 3205 3272 0 644 282 180 53 chr4 18934585 18934673 -183393674 - MLT1K LTR MaLR 0 588 513 1582 142 75 19 chr4 18934673 18934940 -183393407 + AluSx SINE Alu 1 282 -30 261 0 0 0 chr4 18934949 18934978 -183393369 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 644 282 180 53 chr4 18934978 18935390 -183392957 - MLT1K LTR MaLR -81 507 13 893 188 109 43 chr4 18935569 18935872 -183392475 - MER33 DNA MER1_type -1 323 1 23 0 0 0 chr4 18936612 18936635 -183391712 + AT_rich Low_complexity Low_complexity 1 23 0 212 352 42 0 chr4 18936917 18936988 -183391359 - L2 LINE L2 -8 3264 3191 484 331 23 0 chr4 18937092 18937267 -183391080 + MLT1K LTR MaLR 84 262 -326 2188 127 36 33 chr4 18937308 18937671 -183390676 - THE1B LTR MaLR 0 364 1 318 326 27 48 chr4 18938299 18938446 -183389901 - HAL1 LINE L1 -3 2504 2361 2130 113 0 3 chr4 18938465 18938773 -183389574 + AluSx SINE Alu 1 307 0 2144 155 26 5 chr4 18938993 18939374 -183388973 + MLT1B LTR MaLR 1 389 -1 249 262 71 44 chr4 18939397 18939580 -183388767 - HAL1b LINE L1 -412 936 749 539 296 84 37 chr4 18939913 18940158 -183388189 - HAL1 LINE L1 -757 1750 1518 1741 191 74 29 chr4 18940158 18940535 -183387812 - MSTD LTR MaLR -2 394 1 539 296 84 37 chr4 18940535 18941229 -183387118 - HAL1 LINE L1 -989 1518 733 367 77 15 15 chr4 18941336 18941401 -183386946 + (TC)n Simple_repeat Simple_repeat 1 65 0 236 163 0 0 chr4 18941590 18941633 -183386714 - MLT1I LTR MaLR -267 142 100 802 171 43 0 chr4 18941836 18941976 -183386371 + FRAM SINE Alu 1 146 -30 339 65 0 0 chr4 18941978 18942024 -183386323 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 957 204 0 0 chr4 18942415 18942582 -183385765 + AluJb SINE Alu 130 296 -16 1171 236 57 9 chr4 18943107 18943438 -183384909 - MLT1C LTR MaLR 0 467 121 451 311 102 11 chr4 18943535 18943712 -183384635 - MER91A DNA MER1_type -1 195 3 232 235 12 99 chr4 18943833 18943914 -183384433 - L2 LINE L2 0 3313 3240 259 277 30 10 chr4 18944293 18944394 -183383953 + MARNA DNA Mariner 477 579 -7 344 219 86 33 chr4 18944639 18944798 -183383549 + L1M4 LINE L1 4357 4539 -1607 413 287 79 30 chr4 18945301 18945503 -183382844 - L2 LINE L2 -94 3219 3008 24 0 0 0 chr4 18945737 18945761 -183382586 + AT_rich Low_complexity Low_complexity 1 24 0 2535 202 86 17 chr4 18946045 18946629 -183381718 + MLT1E3 LTR MaLR 1 624 0 574 278 129 31 chr4 18947060 18947599 -183380748 - L1ME3A LINE L1 -219 5951 5317 2144 111 7 7 chr4 18947599 18947896 -183380451 - AluSx SINE Alu -15 297 1 574 278 129 31 chr4 18947896 18948052 -183380295 - L1ME3A LINE L1 -853 5317 5178 1487 220 11 35 chr4 18948062 18948434 -183379913 + MLT1A2 LTR MaLR 12 374 0 827 256 57 60 chr4 18948434 18949016 -183379331 - L1ME3A LINE L1 -963 5183 4604 469 275 58 34 chr4 18949039 18949453 -183378894 - L1MC5 LINE L1 -49 7912 7489 634 344 113 40 chr4 18949883 18950701 -183377646 - L2 LINE L2 -452 2862 1986 832 198 8 16 chr4 18950701 18950885 -183377462 - MLT1B LTR MaLR -1 395 207 288 141 118 118 chr4 18950876 18950961 -183377386 - MLT1B LTR MaLR -305 85 1 * 301 384 25 12 chr4 18950961 18951206 -183377141 - L2 LINE L2 -1323 1991 1744 2112 119 46 98 chr4 18951438 18951790 -183376557 - MLT1C LTR MaLR -12 455 133 1798 170 0 3 chr4 18951790 18952079 -183376268 - AluSx SINE Alu -24 288 1 2112 119 46 98 chr4 18952079 18952206 -183376141 - MLT1C LTR MaLR -334 133 1 288 316 105 8 chr4 18952214 18952347 -183376000 - L2 LINE L2 -493 2821 2676 1773 164 7 11 chr4 18952402 18952689 -183375658 + AluJb SINE Alu 5 290 -22 1814 184 105 77 chr4 18953310 18953814 -183374533 + MLT2B1 LTR ERVL 1 518 -2 239 244 44 49 chr4 18954076 18954265 -183374082 + LTR67 LTR ERVL 356 534 -23 272 332 121 36 chr4 18954321 18954710 -183373637 - L2 LINE L2 -962 2352 1931 214 298 0 0 chr4 18954859 18954916 -183373431 - MIR SINE MIR -148 114 58 1803 131 45 63 chr4 18954951 18955333 -183373014 + THE1C LTR MaLR 1 375 0 587 317 18 22 chr4 18955909 18956133 -183372214 + MIR SINE MIR 31 253 -9 24 0 0 0 chr4 18956944 18956968 -183371379 + AT_rich Low_complexity Low_complexity 1 24 0 444 180 40 0 chr4 18957180 18957280 -183371067 - L1MA9 LINE L1 -2 6310 6207 518 124 11 0 chr4 18957329 18957418 -183370929 + (TTCC)n Simple_repeat Simple_repeat 3 92 0 191 317 49 12 chr4 18958217 18958299 -183370048 - L2 LINE L2 -50 3263 3179 289 291 103 34 chr4 18958632 18958807 -183369540 - MIR SINE MIR -56 206 20 2049 130 0 13 chr4 18959236 18959536 -183368811 + AluSx SINE Alu 1 296 -16 30 27 0 0 chr4 18960079 18960116 -183368231 + AT_rich Low_complexity Low_complexity 1 37 0 25 65 0 0 chr4 18960501 18960547 -183367800 + AT_rich Low_complexity Low_complexity 1 46 0 22 0 0 0 chr4 18960671 18960693 -183367654 + AT_rich Low_complexity Low_complexity 1 22 0 279 156 0 0 chr4 18960815 18960860 -183367487 - MLT2B2 LTR ERVL -1 514 470 2065 227 45 22 chr4 18960910 18961373 -183366974 - MLT2B2 LTR ERVL -41 474 1 26 30 0 0 chr4 18961409 18961442 -183366905 + AT_rich Low_complexity Low_complexity 1 33 0 27 29 0 0 chr4 18961647 18961681 -183366666 + AT_rich Low_complexity Low_complexity 1 34 0 2585 207 81 7 chr4 18961711 18962314 -183366033 + MER82 DNA MER2_type 2 649 -4 392 288 131 38 chr4 18962567 18962880 -183365467 - HAL1 LINE L1 -936 1571 1230 1956 189 57 47 chr4 18963065 18963454 -183364893 - L1M4 LINE L1 -1150 5494 5097 1904 149 28 0 chr4 18963454 18963736 -183364611 - AluSx SINE Alu -22 290 1 1956 189 57 47 chr4 18963736 18963837 -183364510 - L1M4 LINE L1 -1547 5097 4999 1013 285 12 12 chr4 18963816 18964146 -183364201 - L1M4 LINE L1 -2039 4605 4276 * 1266 188 59 49 chr4 18964162 18964450 -183363897 - AluJo SINE Alu -21 291 1 1580 218 69 17 chr4 18964450 18964972 -183363375 - L1M4 LINE L1 -3106 3538 2990 5584 225 62 40 chr4 18964987 18965831 -183362516 - L1M4 LINE L1 -4584 2062 1238 3003 187 21 44 chr4 18965831 18966445 -183361902 + MER77 LTR ERV1 2 601 -4 5584 225 62 40 chr4 18966445 18967607 -183360740 - L1M4 LINE L1 -5408 1238 16 2305 75 0 0 chr4 18968102 18968443 -183359904 - AluY SINE Alu 0 341 1 243 289 22 11 chr4 18968513 18968603 -183359744 + CT-rich Low_complexity Low_complexity 5 95 0 294 323 32 0 chr4 18968726 18968884 -183359463 + L1ME4a LINE L1 5758 5920 -201 1041 298 133 13 chr4 18969039 18969504 -183358843 + L2 LINE L2 2792 3311 -2 432 336 98 1 chr4 18969785 18970003 -183358344 - MIR SINE MIR -13 249 13 1221 239 91 48 chr4 18970007 18970619 -183357728 - L2 LINE L2 0 3313 2677 1385 251 89 8 chr4 18970622 18971017 -183357330 - L2 LINE L2 -929 2385 1959 1223 204 12 69 chr4 18971711 18972044 -183356303 + MLT2C1 LTR ERVL 36 349 -48 231 36 0 0 chr4 18972069 18972097 -183356250 + (CA)n Simple_repeat Simple_repeat 2 29 0 292 143 0 20 chr4 18972115 18972164 -183356183 + MLT2C1 LTR ERVL 350 397 0 310 402 96 4 chr4 18972309 18972558 -183355789 + L2 LINE L2 3001 3272 0 4585 133 81 83 chr4 18973368 18973715 -183354632 + L1MC3 LINE L1 6766 7112 -673 245 270 16 0 chr4 18973715 18973778 -183354569 + MLT1F1 LTR MaLR 35 98 -469 4585 133 81 83 chr4 18973778 18974389 -183353958 + L1MC3 LINE L1 7112 7784 -1 5272 88 58 11 chr4 18974394 18975214 -183353133 - L1MA3 LINE L1 0 6305 5447 5218 143 24 0 chr4 18975231 18976239 -183352108 + L1PA16 LINE L1 5130 6157 -9 1292 202 16 4 chr4 18976262 18976514 -183351833 - L1MB3 LINE L1 -147 6036 5782 194 128 26 0 chr4 18976772 18976811 -183351536 + GA-rich Low_complexity Low_complexity 5 44 0 279 0 0 0 chr4 18977561 18977592 -183350755 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 212 290 16 0 chr4 18977684 18977746 -183350601 + MIR SINE MIR 200 262 0 1507 228 171 16 chr4 18977809 18978354 -183349993 + LTR50 LTR ERVL 1 629 -166 342 274 69 0 chr4 18978496 18978598 -183349749 - MER63 DNA MER1_type -326 736 2 1888 153 0 17 chr4 18978792 18979080 -183349267 - AluJb SINE Alu -21 291 9 229 333 0 0 chr4 18979991 18980051 -183348296 - MIR SINE MIR -143 119 60 458 246 200 16 chr4 18980863 18981054 -183347293 + MIR SINE MIR 38 260 -2 709 185 7 174 chr4 18981510 18981780 -183346567 + MIR SINE MIR 13 237 -25 227 310 133 9 chr4 18981916 18982029 -183346318 - L2 LINE L2 -435 2879 2753 310 311 19 9 chr4 18982030 18982136 -183346211 - MER63A DNA MER1_type 0 210 104 1169 286 37 13 chr4 18982147 18982521 -183345826 - L2 LINE L2 -555 2759 2377 1992 158 21 34 chr4 18982614 18982993 -183345354 - MLT1A2 LTR MaLR 0 374 1 2330 84 0 10 chr4 18983216 18983513 -183344834 + AluY SINE Alu 4 297 -14 320 150 17 17 chr4 18983690 18983750 -183344597 + MIR SINE MIR 3 62 -200 633 281 35 30 chr4 18983751 18983954 -183344393 - MLT1I LTR MaLR -121 288 85 238 302 47 47 chr4 18984421 18984550 -183343797 + MIR SINE MIR 109 237 -25 345 318 27 18 chr4 18985913 18986023 -183342324 + MIR SINE MIR 81 191 -71 450 299 64 11 chr4 18986040 18986227 -183342120 - L2 LINE L2 -13 3300 3104 1942 163 46 14 chr4 18986230 18986652 -183341695 + MER31A LTR ERV1 1 447 -19 830 337 140 38 chr4 18986794 18987695 -183340652 - L2 LINE L2 -339 2975 1983 398 267 8 0 chr4 18987712 18987843 -183340504 + L1MB7 LINE L1 6035 6166 -18 6544 100 8 11 chr4 18987958 18990269 -183338078 + L1PA10 LINE L1 3781 6167 -1 23 0 0 0 chr4 18990420 18990443 -183337904 + AT_rich Low_complexity Low_complexity 1 23 0 1400 126 3 116 chr4 18990444 18990663 -183337684 - L1PB4 LINE L1 -15 6141 5962 1899 119 10 38 chr4 18990663 18990956 -183337391 - AluY SINE Alu -26 285 1 1400 126 3 116 chr4 18990956 18991030 -183337317 - L1PB4 LINE L1 -194 5962 5881 885 308 83 9 chr4 18991090 18991522 -183336825 + Charlie7 DNA MER1_type 56 519 -2093 567 224 32 68 chr4 18991632 18991851 -183336496 + Charlie7 DNA MER1_type 2170 2380 -232 21148 76 1 0 chr4 18992214 18994974 -183333373 + L1PA5 LINE L1 11 2773 -3373 21257 39 3 0 chr4 18995392 18998765 -183329582 + L1PA5 LINE L1 2777 6152 -2 361 298 100 32 chr4 18998790 18999069 -183329278 + L1ME4a LINE L1 5600 5897 -224 1679 271 48 57 chr4 18999485 19000153 -183328194 - L2 LINE L2 -41 3272 2622 2970 116 38 59 chr4 19000153 19000613 -183327734 + L1MB4 LINE L1 5608 6055 -125 2902 74 0 11 chr4 19000613 19000992 -183327355 - THE1C LTR MaLR 0 375 1 2970 116 38 59 chr4 19000992 19001110 -183327237 + L1MB4 LINE L1 6055 6174 -6 1679 271 48 57 chr4 19001110 19001434 -183326913 - L2 LINE L2 -691 2622 2297 207 209 0 0 chr4 19001585 19001628 -183326719 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 3758 204 52 17 chr4 19003228 19004235 -183324112 - MER69 DNA AcHobo -34 2492 1451 1411 211 31 3 chr4 19004336 19004630 -183323717 - MER69 DNA AcHobo -2224 302 1 253 267 129 0 chr4 19005021 19005122 -183323225 + L2 LINE L2 3191 3304 -9 1124 244 50 0 chr4 19005193 19005435 -183322912 + MIR SINE MIR 8 261 -1 324 269 21 11 chr4 19005535 19005628 -183322719 - MIR3 SINE MIR -20 188 95 34 42 0 0 chr4 19006142 19006190 -183322157 + AT_rich Low_complexity Low_complexity 1 48 0 254 29 29 0 chr4 19006711 19006746 -183321601 + (TAGA)n Simple_repeat Simple_repeat 2 37 0 32 0 0 0 chr4 19006850 19006882 -183321465 + AT_rich Low_complexity Low_complexity 1 32 0 319 24 0 0 chr4 19006882 19006924 -183321423 - L1PA6 LINE L1 -3 6151 6110 23 0 0 0 chr4 19006988 19007011 -183321336 + AT_rich Low_complexity Low_complexity 1 23 0 2276 119 0 0 chr4 19007922 19008232 -183320115 - AluSx SINE Alu -2 310 1 770 298 105 46 chr4 19008409 19008912 -183319435 + MLT1K LTR MaLR 20 552 -36 2017 166 49 32 chr4 19009075 19009597 -183318750 - MLT2A2 LTR ERVL -23 531 1 11286 86 5 5 chr4 19009597 19011069 -183317278 - HERVL-A2 LTR ERVL 0 5654 4183 300 317 0 0 chr4 19011108 19011190 -183317157 + L2 LINE L2 2891 2972 -300 496 256 60 8 chr4 19011532 19011665 -183316682 - MIR SINE MIR -73 189 50 635 311 27 23 chr4 19012955 19013215 -183315132 - MIR SINE MIR 0 262 2 452 258 129 54 chr4 19013314 19013500 -183314847 - MIR SINE MIR -44 218 19 23 0 0 0 chr4 19014074 19014097 -183314250 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr4 19014199 19014224 -183314123 + AT_rich Low_complexity Low_complexity 1 25 0 195 367 63 13 chr4 19015542 19015700 -183312647 + L2 LINE L2 3107 3272 0 251 157 20 0 chr4 19015796 19015847 -183312500 + GA-rich Low_complexity Low_complexity 6 57 0 600 243 85 23 chr4 19015857 19016034 -183312313 - MIR SINE MIR -16 246 59 398 248 26 26 chr4 19017240 19017353 -183310994 - LTR67 LTR ERVL -419 138 26 190 227 23 0 chr4 19017605 19017649 -183310698 - L2 LINE L2 -12 3260 3216 332 299 104 19 chr4 19017654 19017808 -183310539 + MIR SINE MIR 13 179 -83 229 289 134 0 chr4 19017915 19018012 -183310335 - MIR SINE MIR -131 131 22 426 39 0 0 chr4 19018378 19018430 -183309917 + (TA)n Simple_repeat Simple_repeat 1 52 0 2124 148 0 66 chr4 19019156 19019594 -183308753 + L1MA5 LINE L1 5892 6300 0 5231 41 6 0 chr4 19021840 19022500 -183305847 + L1PA5 LINE L1 5498 6161 0 469 244 0 0 chr4 19022943 19023058 -183305289 + L1MA9 LINE L1 6174 6288 -24 1062 308 113 31 chr4 19023360 19024188 -183304159 - L2 LINE L2 0 3313 2397 2302 147 36 5 chr4 19024578 19024965 -183303382 - MSTA LTR MaLR -29 399 1 894 267 18 13 chr4 19025154 19025379 -183302968 + MIR SINE MIR 11 236 -26 539 276 83 24 chr4 19025443 19025697 -183302650 + L1ME LINE L1 5474 5742 -379 27 29 0 0 chr4 19025773 19025807 -183302540 + AT_rich Low_complexity Low_complexity 1 34 0 2617 194 65 76 chr4 19025807 19026608 -183301739 - L1ME2 LINE L1 -19 6145 5354 1388 235 68 7 chr4 19026618 19027043 -183301304 - L1ME2 LINE L1 -1070 5076 4626 634 278 27 44 chr4 19027055 19027350 -183300997 + L1MC4a LINE L1 5647 5936 -1872 208 191 0 21 chr4 19027350 19027397 -183300950 + (TA)n Simple_repeat Simple_repeat 1 46 0 698 271 143 40 chr4 19027403 19027754 -183300593 - MLT1K LTR MaLR -75 513 127 716 217 5 26 chr4 19028427 19028616 -183299731 + L1MA2 LINE L1 6117 6301 -3 21 0 0 0 chr4 19029326 19029347 -183299000 + AT_rich Low_complexity Low_complexity 1 21 0 1442 247 48 10 chr4 19029472 19029618 -183298729 - HsTC2 DNA Tc2 2 1900 1761 1607 167 33 25 chr4 19029618 19029893 -183298454 + AluJb SINE Alu 1 277 -35 1442 247 48 10 chr4 19029893 19030159 -183298188 - HsTC2 DNA Tc2 -137 1761 1296 658 304 86 52 chr4 19030150 19030571 -183297776 + MLT1J LTR MaLR 31 465 -46 * 32 43 0 0 chr4 19031662 19031708 -183296639 + AT_rich Low_complexity Low_complexity 1 46 0 554 168 22 36 chr4 19032884 19033021 -183295326 - L1MC1 LINE L1 0 6333 6199 321 235 20 41 chr4 19033292 19033390 -183294957 + L3 LINE CR1 1481 1576 -1 28 0 0 0 chr4 19033499 19033527 -183294820 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr4 19034641 19034669 -183293678 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr4 19035379 19035402 -183292945 + AT_rich Low_complexity Low_complexity 1 23 0 7745 19 0 3 chr4 19037158 19038735 -183289612 + L1PA2 LINE L1 4579 6152 -3 889 288 94 38 chr4 19039436 19039896 -183288451 + HAL1b LINE L1 41 541 -807 1692 192 79 84 chr4 19039896 19040452 -183287895 + MLT2B3 LTR ERVL 1 553 -1 889 288 94 38 chr4 19040452 19040564 -183287783 + HAL1b LINE L1 541 645 -703 2579 215 9 40 chr4 19040715 19040962 -183287385 + MER68 LTR ERV1 25 278 -284 2588 45 0 13 chr4 19040962 19041273 -183287074 + AluY SINE Alu 1 307 -4 2579 215 9 40 chr4 19041273 19041579 -183286768 + MER68 LTR ERV1 278 561 -1 2225 196 99 4 chr4 19042003 19042477 -183285870 + MLT2B1 LTR ERVL 2 520 0 249 226 121 40 chr4 19042942 19043066 -183285281 + L1 LINE L1 2896 3029 -3117 300 316 82 39 chr4 19043297 19043503 -183284844 + L1 LINE L1 3085 3299 -2847 1125 118 0 64 chr4 19043647 19043850 -183284497 - L1PA8 LINE L1 0 6172 5983 499 258 96 65 chr4 19043911 19044433 -183283914 + LTR50 LTR ERVL 18 506 -17 329 269 35 0 chr4 19044434 19044612 -183283735 + MIR SINE MIR 107 249 -13 241 317 70 39 chr4 19044651 19044935 -183283412 + L1 LINE L1 3512 3804 -2342 247 145 133 60 chr4 19045012 19045095 -183283252 + L2 LINE L2 2118 2206 -1108 578 253 27 50 chr4 19045095 19045274 -183283073 + MER58C DNA MER1_type 30 214 -1 568 215 8 0 chr4 19045325 19045455 -183282892 - L1ME3A LINE L1 -13 6157 6027 2097 105 10 3 chr4 19046081 19046375 -183281972 - AluSx SINE Alu -16 296 1 31 26 0 0 chr4 19046376 19046414 -183281933 + AT_rich Low_complexity Low_complexity 1 38 0 24 0 0 0 chr4 19046456 19046480 -183281867 + AT_rich Low_complexity Low_complexity 1 24 0 466 297 162 38 chr4 19046677 19047017 -183281330 - L2 LINE L2 -5 3308 2927 842 113 7 0 chr4 19047309 19047451 -183280896 + (TTCC)n Simple_repeat Simple_repeat 1 143 0 254 311 0 71 chr4 19048797 19048980 -183279367 + L2 LINE L2 2804 2973 -341 542 299 116 37 chr4 19049137 19049219 -183279128 - MLT1J2 LTR MaLR -3 447 373 1646 201 58 48 chr4 19049219 19049681 -183278666 - MLT1C LTR MaLR 0 467 1 542 299 116 37 chr4 19049681 19049953 -183278394 - MLT1J2 LTR MaLR -77 373 65 1027 201 114 27 chr4 19049962 19050260 -183278087 - MER5C DNA MER1_type 0 324 1 439 306 9 46 chr4 19050291 19050510 -183277837 + L2 LINE L2 3089 3299 -14 484 251 64 59 chr4 19051241 19051292 -183277055 - MIR SINE MIR -4 258 209 1928 136 44 0 chr4 19051292 19051586 -183276761 - AluSx SINE Alu -4 308 2 484 251 64 59 chr4 19051586 19051721 -183276626 - MIR SINE MIR -53 209 71 189 226 0 0 chr4 19051874 19051927 -183276420 + (TTATG)n Simple_repeat Simple_repeat 3 55 0 342 273 55 27 chr4 19052687 19052797 -183275550 + L2 LINE L2 3160 3272 0 262 349 41 14 chr4 19052873 19053019 -183275328 + MIR SINE MIR 59 208 -54 342 45 0 0 chr4 19053019 19053063 -183275284 + (CA)n Simple_repeat Simple_repeat 1 44 0 5726 229 12 11 chr4 19053063 19054498 -183273849 + L1 LINE L1 2956 4393 -1753 282 29 0 0 chr4 19054498 19054533 -183273814 + (CA)n Simple_repeat Simple_repeat 2 36 0 1121 223 54 11 chr4 19054536 19054638 -183273709 + AluJo SINE Alu 19 115 -197 293 0 0 26 chr4 19054638 19054676 -183273671 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 1121 223 54 11 chr4 19054676 19054833 -183273514 + AluJo SINE Alu 115 289 -23 30 27 0 0 chr4 19054833 19054870 -183273477 + AT_rich Low_complexity Low_complexity 1 37 0 565 191 0 0 chr4 19054952 19055041 -183273306 - MER7A DNA MER2_type -259 87 1 6473 169 34 15 chr4 19055128 19056574 -183271773 + L1M2 LINE L1 3956 5431 -743 1043 248 98 40 chr4 19057127 19057656 -183270691 + MLT1E3 LTR MaLR 10 616 -8 832 256 104 16 chr4 19058140 19058457 -183269890 + MLT1J LTR MaLR 17 361 -150 470 242 54 65 chr4 19058482 19058668 -183269679 + MLT1J LTR MaLR 1 184 -327 386 374 34 0 chr4 19058925 19059072 -183269275 + L2 LINE L2 3121 3272 0 2204 127 0 0 chr4 19059316 19059615 -183268732 - AluSx SINE Alu -13 299 1 2105 123 45 31 chr4 19059703 19060062 -183268285 + THE1B LTR MaLR 1 364 0 401 273 8 15 chr4 19060108 19060240 -183268107 + MLT1H LTR MaLR 30 160 -389 4004 120 176 93 chr4 19060385 19061806 -183266541 - pTR5 LTR ERV1 0 2438 743 2415 108 0 0 chr4 19062719 19063025 -183265322 - AluSx SINE Alu -6 306 1 413 299 61 70 chr4 19063188 19063646 -183264701 - MLT1J LTR MaLR -50 461 8 1207 170 62 0 chr4 19064273 19064514 -183263833 - L1PB4 LINE L1 -4 6152 5897 193 0 0 86 chr4 19064517 19064552 -183263795 + (TTAA)n Simple_repeat Simple_repeat 1 32 0 419 190 0 25 chr4 19064553 19064632 -183263715 - FLAM_A SINE Alu -19 123 47 3602 151 32 1 chr4 19064646 19065607 -183262740 - L1PB4 LINE L1 -277 5879 4891 762 240 15 10 chr4 19065712 19065912 -183262435 - L1PB4 LINE L1 0 6156 5956 523 238 11 33 chr4 19066012 19066193 -183262154 - L1ME1 LINE L1 -193 5973 5797 2386 228 74 14 chr4 19066206 19067083 -183261264 - L1M4 LINE L1 -2769 3377 2448 594 230 46 5 chr4 19067082 19067278 -183261069 + L1ME1 LINE L1 5004 5207 -939 * 1170 237 62 25 chr4 19067283 19067637 -183260710 - MLT1A2 LTR MaLR 0 374 8 1639 218 56 126 chr4 19067654 19068364 -183259983 + L1ME1 LINE L1 5218 5844 -322 5110 97 12 0 chr4 19068364 19069047 -183259300 + LTR8 LTR ERV1 1 691 0 1639 218 56 126 chr4 19069047 19069345 -183259002 + L1ME1 LINE L1 5844 6161 -5 625 245 245 19 chr4 19069383 19069746 -183258601 - LTR50 LTR ERVL -349 446 2 242 385 59 30 chr4 19069747 19069882 -183258465 - L2 LINE L2 -31 3241 3103 184 402 0 24 chr4 19070306 19070388 -183257959 + MER5B DNA MER1_type 2 81 -97 504 302 57 60 chr4 19070409 19070707 -183257640 + L2 LINE L2 3016 3312 -1 21 0 0 0 chr4 19070931 19070952 -183257395 + AT_rich Low_complexity Low_complexity 1 21 0 415 293 127 28 chr4 19071136 19071348 -183256999 - MIR SINE MIR 0 262 30 222 353 12 0 chr4 19071472 19071557 -183256790 + L2 LINE L2 3228 3313 0 401 292 64 30 chr4 19071640 19071842 -183256505 - LTR33A LTR ERVL 0 523 315 307 310 86 20 chr4 19071893 19072090 -183256257 - LTR33A LTR ERVL -310 213 4 1387 140 108 7 chr4 19072277 19072626 -183255721 - Ricksha DNA DNA 0 3254 2812 * 2375 195 38 15 chr4 19072617 19072725 -183255622 - Ricksha DNA DNA -2636 610 506 2331 125 5 35 chr4 19072725 19073100 -183255247 + THE1B LTR MaLR 1 364 0 2375 195 38 15 chr4 19073100 19073520 -183254827 - Ricksha DNA DNA -2740 506 70 621 242 57 32 chr4 19073558 19073824 -183254523 + MLT1H LTR MaLR 221 547 -2 708 276 31 16 chr4 19073827 19074019 -183254328 + MIR SINE MIR 57 251 -11 33 25 0 0 chr4 19075021 19075061 -183253286 + AT_rich Low_complexity Low_complexity 1 40 0 608 299 134 0 chr4 19075080 19075304 -183253043 + MIR SINE MIR 3 256 -6 231 204 204 11 chr4 19075304 19075397 -183252950 - L1ME4a LINE L1 -33 6088 5978 387 245 121 58 chr4 19075656 19075979 -183252368 + L1MC/D LINE L1 5491 5832 -303 2362 117 19 19 chr4 19076059 19076434 -183251913 - THE1C LTR MaLR 0 375 1 23 0 0 0 chr4 19076702 19076725 -183251622 + AT_rich Low_complexity Low_complexity 1 23 0 7779 21 0 0 chr4 19076936 19078181 -183250166 - L1PA2 LINE L1 0 6155 4911 8790 26 1 0 chr4 19078183 19079271 -183249076 + L1PA2 LINE L1 3822 4910 -1236 377 222 44 11 chr4 19079484 19079574 -183248773 + MER5A DNA MER1_type 2 94 -95 260 157 0 39 chr4 19080251 19080302 -183248045 - L2 LINE L2 0 3313 3265 1739 93 4 8 chr4 19080636 19080893 -183247454 + L1PA6 LINE L1 5894 6149 -5 1707 213 42 8 chr4 19081826 19082179 -183246168 - MLT1A1 LTR MaLR 0 365 1 300 341 239 16 chr4 19082512 19082767 -183245580 + L2 LINE L2 2961 3272 0 432 262 16 8 chr4 19083101 19083227 -183245120 - MIR SINE MIR -55 207 81 276 352 0 0 chr4 19083341 19083429 -183244918 - MIR SINE MIR 0 262 175 5405 143 19 4 chr4 19083454 19084413 -183243934 + L1MA4 LINE L1 5328 6300 0 22 0 0 0 chr4 19084707 19084729 -183243618 + AT_rich Low_complexity Low_complexity 1 22 0 366 166 1 0 chr4 19084746 19084823 -183243524 + MSTD LTR MaLR 328 396 0 615 314 0 0 chr4 19084823 19084976 -183243371 - MIR SINE MIR -109 153 1 533 296 0 0 chr4 19084981 19085106 -183243241 + MIR SINE MIR 20 144 -118 181 270 0 0 chr4 19085134 19085171 -183243176 + MIR SINE MIR 223 259 -3 301 289 138 28 chr4 19085556 19085809 -183242538 - MLT1J LTR MaLR -3 508 228 2327 108 3 0 chr4 19085862 19086168 -183242179 - AluSq SINE Alu -6 307 1 381 297 69 14 chr4 19086287 19086593 -183241754 + LTR33 LTR ERVL 19 367 -154 213 264 57 0 chr4 19086804 19086857 -183241490 - L2 LINE L2 -2 3311 3256 239 284 0 0 chr4 19087070 19087137 -183241210 - MLT1L LTR MaLR -340 275 209 467 295 81 43 chr4 19087287 19087497 -183240850 + MIR SINE MIR 7 224 -38 200 205 0 77 chr4 19088410 19088488 -183239859 - MIR SINE MIR -46 216 145 968 205 38 0 chr4 19088592 19088802 -183239545 - MER89 LTR ERV1 -7 552 335 463 202 13 58 chr4 19088941 19089152 -183239195 - MER89 LTR ERV1 -259 300 1 277 314 40 65 chr4 19089218 19089342 -183239005 - MIR3 SINE MIR -74 134 14 997 277 68 43 chr4 19089800 19090241 -183238106 - L2 LINE L2 -5 3308 2857 1131 128 6 0 chr4 19091248 19091420 -183236927 + MER2 DNA MER2_type 1 173 -172 369 182 15 0 chr4 19091467 19091533 -183236814 + MER2 DNA MER2_type 279 345 0 519 277 151 0 chr4 19091576 19091735 -183236612 - MER5A DNA MER1_type 0 189 7 188 280 100 0 chr4 19092678 19092728 -183235619 - L2 LINE L2 -9 3304 3250 817 55 18 9 chr4 19092736 19092845 -183235502 - AluY SINE Alu -7 304 195 1872 98 0 0 chr4 19093190 19093426 -183234921 - AluSx SINE Alu -24 288 53 302 309 32 11 chr4 19096674 19096768 -183231579 - MIR SINE MIR -132 130 35 198 316 53 0 chr4 19096862 19096938 -183231409 + MIR SINE MIR 178 257 -5 503 240 156 13 chr4 19096976 19097130 -183231217 + MER5A DNA MER1_type 14 189 0 292 246 14 0 chr4 19097235 19097304 -183231043 - L1MC4a LINE L1 -1067 6741 6672 * 339 241 74 0 chr4 19097301 19097409 -183230938 - L1MC4 LINE L1 -1468 6574 6459 260 393 8 0 chr4 19097508 19097630 -183230717 - L3 LINE CR1 -132 1445 1323 211 213 64 96 chr4 19097739 19097833 -183230514 + MIR SINE MIR 91 181 -81 735 252 64 6 chr4 19097941 19098198 -183230149 + Tigger5 DNA MER2_type 120 2323 0 226 286 16 0 chr4 19098293 19098356 -183229991 + CT-rich Low_complexity Low_complexity 1 64 0 228 279 221 10 chr4 19098356 19098460 -183229887 - L2 LINE L2 -1 3312 3187 21 0 0 0 chr4 19098468 19098489 -183229858 + AT_rich Low_complexity Low_complexity 1 21 0 387 274 41 48 chr4 19098523 19098669 -183229678 - L2 LINE L2 -50 3263 3119 754 243 21 5 chr4 19099735 19099924 -183228423 + LTR33 LTR ERVL 3 194 -327 305 290 63 63 chr4 19099976 19100183 -183228164 + LTR33 LTR ERVL 304 510 -11 247 288 170 26 chr4 19100276 19100429 -183227918 + MIR SINE MIR 52 226 -36 1383 212 12 12 chr4 19100765 19101110 -183227237 - MLT1A1 LTR MaLR -16 349 5 421 271 25 25 chr4 19101883 19102001 -183226346 - L2 LINE L2 -2 3311 3194 186 43 0 0 chr4 19102036 19102059 -183226288 + (CAAAG)n Simple_repeat Simple_repeat 2 24 0 1833 142 69 28 chr4 19103216 19103576 -183224771 - THE1C LTR MaLR 0 375 1 275 286 16 0 chr4 19103991 19104054 -183224293 + L2 LINE L2 3246 3309 -4 264 193 18 37 chr4 19105062 19105171 -183223176 + (TA)n Simple_repeat Simple_repeat 2 108 0 878 288 0 9 chr4 19107108 19107320 -183221027 + MIR SINE MIR 51 260 -2 192 319 115 92 chr4 19107503 19107763 -183220584 + L2 LINE L2 3007 3272 0 3560 209 15 24 chr4 19107907 19108908 -183219439 + L1MB2 LINE L1 4436 5431 -740 1230 160 5 19 chr4 19108908 19109106 -183219241 + AluJb SINE Alu 90 286 -26 360 0 0 0 chr4 19109106 19109146 -183219201 + (CA)n Simple_repeat Simple_repeat 2 41 0 1230 160 5 19 chr4 19109146 19109159 -183219188 + AluJb SINE Alu 286 298 -14 1462 180 33 0 chr4 19109163 19109463 -183218884 + L1MB2 LINE L1 5431 5740 -428 5038 132 13 13 chr4 19109494 19111202 -183217145 - L1PA15 LINE L1 -1 6815 5058 10770 229 25 11 chr4 19111309 19115039 -183213308 - L1PA15 LINE L1 -1722 5075 1280 1290 251 16 39 chr4 19115405 19115791 -183212556 - L1PA15 LINE L1 -6063 724 348 2104 143 47 19 chr4 19115793 19116218 -183212129 + L1MB2 LINE L1 5733 6169 -2 238 272 88 44 chr4 19116569 19116683 -183211664 - MIR SINE MIR -123 139 21 204 182 0 0 chr4 19117030 19117074 -183211273 + (TG)n Simple_repeat Simple_repeat 2 45 0 64 14 0 0 chr4 19117375 19117446 -183210901 + AT_rich Low_complexity Low_complexity 1 71 0 238 309 25 113 chr4 19117657 19117834 -183210513 + L2 LINE L2 2432 2576 -738 1296 180 90 51 chr4 19117834 19118190 -183210157 + MLT1A2 LTR MaLR 1 370 -4 238 309 25 113 chr4 19118190 19118294 -183210053 + L2 LINE L2 2576 2688 -626 1912 219 38 11 chr4 19118298 19118829 -183209518 + L1ME2 LINE L1 5618 6162 -2 978 171 40 11 chr4 19119072 19119248 -183209099 - AluJo SINE Alu -5 307 127 983 293 75 16 chr4 19119674 19120060 -183208287 - LTR16C LTR ERVL -9 482 74 22 0 0 0 chr4 19120322 19120344 -183208003 + AT_rich Low_complexity Low_complexity 1 22 0 211 227 0 23 chr4 19120532 19120576 -183207771 + MIR SINE MIR 107 149 -59 210 326 21 11 chr4 19120641 19120736 -183207611 - L2 LINE L2 -211 3061 2966 240 329 71 34 chr4 19120889 19121184 -183207163 + L2 LINE L2 2670 2975 -339 24 0 0 0 chr4 19121223 19121247 -183207100 + AT_rich Low_complexity Low_complexity 1 24 0 32606 98 16 25 chr4 19121252 19127441 -183200906 - L1PA6 LINE L1 -3 6151 11 210 370 9 76 chr4 19127451 19127662 -183200685 + L2 LINE L2 2990 3186 -86 1902 136 0 0 chr4 19127810 19128087 -183200260 - AluSx SINE Alu 0 302 26 24 0 0 0 chr4 19128761 19128785 -183199562 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr4 19128807 19128831 -183199516 + AT_rich Low_complexity Low_complexity 1 24 0 228 342 47 80 chr4 19129301 19129576 -183198771 - L2 LINE L2 -40 3232 2967 2455 124 13 5 chr4 19130679 19131051 -183197296 - THE1C LTR MaLR 0 375 1 4885 117 30 7 chr4 19131052 19131812 -183196535 - THE1C-int LTR MaLR -1 1579 802 364 265 6 77 chr4 19131812 19131982 -183196365 + L2 LINE L2 3154 3311 -2 180 0 0 0 chr4 19132007 19132027 -183196320 + (T)n Simple_repeat Simple_repeat 1 20 0 1104 159 0 0 chr4 19132049 19132219 -183196128 + THE1-int LTR MaLR 1087 1256 -324 1895 113 0 0 chr4 19132219 19132467 -183195880 - AluSq SINE Alu -65 248 1 217 225 0 0 chr4 19132474 19132514 -183195833 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 973 293 39 81 chr4 19132525 19133041 -183195306 + L2 LINE L2 2807 3300 -13 387 321 29 0 chr4 19133095 19133235 -183195112 + MIR SINE MIR 43 186 -76 769 291 84 4 chr4 19133255 19133492 -183194855 - MIR SINE MIR 0 262 7 230 209 0 0 chr4 19133486 19133529 -183194818 + MIR SINE MIR 219 261 -1 * 38 39 0 0 chr4 19133700 19133752 -183194595 + AT_rich Low_complexity Low_complexity 1 52 0 716 273 16 16 chr4 19134349 19134532 -183193815 - MIR3 SINE MIR -3 205 23 229 254 79 0 chr4 19134747 19134861 -183193486 - L1ME4a LINE L1 -3 6118 5996 23 33 0 0 chr4 19135046 19135076 -183193271 + AT_rich Low_complexity Low_complexity 1 30 0 340 320 162 28 chr4 19135077 19135465 -183192882 - L1M4 LINE L1 -2510 3636 3197 1228 293 54 19 chr4 19135468 19135891 -183192456 + LTR16A LTR ERVL 7 444 -6 3508 287 57 24 chr4 19135900 19137221 -183191126 + HERV16 LTR ERVL 20 1384 -3612 182 200 50 50 chr4 19137238 19137298 -183191049 - L2 LINE L2 -2828 486 427 305 219 27 14 chr4 19137311 19137384 -183190963 + HERV16 LTR ERVL 1477 1550 -3446 550 189 19 9 chr4 19137436 19137542 -183190805 + HERV16 LTR ERVL 1688 1794 -3202 267 235 24 0 chr4 19137566 19137651 -183190696 + L1ME3A LINE L1 3431 3517 -2629 962 155 109 0 chr4 19137707 19137881 -183190466 + MLT1D LTR MaLR 313 505 0 255 219 24 12 chr4 19137945 19138027 -183190320 + L1ME3A LINE L1 4472 4554 -1592 1168 232 92 41 chr4 19138056 19138492 -183189855 + MLT1C LTR MaLR 10 467 0 318 301 20 105 chr4 19138496 19138649 -183189698 + MIR SINE MIR 2 141 -121 241 287 39 78 chr4 19138822 19139052 -183189295 + L1ME3A LINE L1 4674 4894 -1252 1936 100 100 0 chr4 19139141 19139400 -183188947 + AluSg SINE Alu 6 290 -20 661 305 72 21 chr4 19139725 19140037 -183188310 + L1ME3A LINE L1 5280 5575 -595 2301 205 72 33 chr4 19140037 19140607 -183187740 + MLT1E LTR MaLR 2 593 0 661 305 72 21 chr4 19140607 19140944 -183187403 + L1ME3A LINE L1 5575 5962 -208 290 273 58 7 chr4 19141639 19141778 -183186569 + HAL1 LINE L1 1407 1552 -955 2192 191 34 32 chr4 19141949 19142446 -183185901 - MLT1D LTR MaLR -7 498 1 253 227 0 118 chr4 19142514 19142624 -183185723 + MIR SINE MIR 39 135 -73 207 317 0 0 chr4 19142633 19142693 -183185654 - L2 LINE L2 -4 3309 3250 227 246 0 35 chr4 19142735 19142792 -183185555 + MIR SINE MIR 196 250 -12 272 305 110 0 chr4 19142901 19142983 -183185364 - L2 LINE L2 -20 3252 3162 4173 123 5 2 chr4 19143157 19143769 -183184578 - L1PA16 LINE L1 -9 6157 5544 729 205 0 0 chr4 19144145 19144272 -183184075 - FLAM_A SINE Alu -6 127 1 21 0 0 0 chr4 19144701 19144722 -183183625 + AT_rich Low_complexity Low_complexity 1 21 0 598 279 79 6 chr4 19144730 19144895 -183183452 - MIR SINE MIR -55 207 31 283 388 7 7 chr4 19145388 19145540 -183182807 - L2 LINE L2 -594 2720 2569 264 227 0 30 chr4 19145687 19145753 -183182594 - L2 LINE L2 0 3313 3250 251 408 8 0 chr4 19146175 19146295 -183182052 + MIR SINE MIR 34 153 -75 21 0 0 0 chr4 19146369 19146390 -183181957 + AT_rich Low_complexity Low_complexity 1 21 0 509 270 223 9 chr4 19146518 19146733 -183181614 - MIR SINE MIR 0 262 2 313 318 153 11 chr4 19146810 19146999 -183181348 + MIR SINE MIR 3 218 -44 514 253 100 7 chr4 19147496 19147646 -183180701 + MIR SINE MIR 33 196 -66 604 129 0 10 chr4 19147971 19148072 -183180275 - LTR12 LTR ERV1 0 714 615 287 241 23 0 chr4 19148094 19148181 -183180166 - LTR30 LTR ERV1 -110 612 524 681 128 5 5 chr4 19148268 19148388 -183179959 - LTR12 LTR ERV1 -480 234 1 290 277 57 7 chr4 19148412 19148553 -183179794 + L1MC5 LINE L1 7272 7419 -542 * 378 290 38 1 chr4 19148551 19148704 -183179643 + L1MC4 LINE L1 7526 7775 -220 1996 148 33 33 chr4 19148725 19149089 -183179258 - THE1B LTR MaLR 0 364 1 250 282 0 14 chr4 19149208 19149279 -183179068 - MER5B DNA MER1_type -88 90 21 407 222 51 8 chr4 19149307 19149424 -183178923 + L1ME LINE L1 5670 5791 -379 835 228 96 28 chr4 19150626 19150876 -183177471 - MLT1H LTR MaLR 0 549 283 465 247 78 0 chr4 19151283 19151437 -183176910 + MER103 DNA DNA 1 166 0 200 339 30 55 chr4 19152028 19152193 -183176154 + MIR SINE MIR 88 248 -14 493 258 136 72 chr4 19152326 19152702 -183175645 + L2 LINE L2 2901 3300 -13 214 267 100 92 chr4 19153037 19153157 -183175190 + L2 LINE L2 2976 3096 -176 180 0 0 0 chr4 19153231 19153251 -183175096 + (T)n Simple_repeat Simple_repeat 1 20 0 1052 306 92 4 chr4 19153259 19153713 -183174634 + MLT1K LTR MaLR 95 588 0 693 351 39 9 chr4 19154921 19155251 -183173096 + L2 LINE L2 2636 2975 -339 962 194 35 31 chr4 19155277 19155504 -183172843 + MLT1D LTR MaLR 5 232 -273 478 315 165 30 chr4 19155544 19156197 -183172150 - L2 LINE L2 -163 3109 2366 13689 188 32 8 chr4 19156468 19158230 -183170117 - L1PB1 LINE L1 0 6867 5149 234 0 0 0 chr4 19158230 19158256 -183170091 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 13689 188 32 8 chr4 19158256 19162009 -183166338 - L1PB1 LINE L1 -1718 5149 1094 3112 233 70 15 chr4 19162013 19162987 -183165360 - L1PB1 LINE L1 -5817 1046 20 1953 160 7 0 chr4 19162992 19163298 -183165049 - AluSx SINE Alu -4 308 1 1116 120 0 25 chr4 19163300 19163500 -183164847 - L1MA8 LINE L1 -4 6287 6093 722 348 32 32 chr4 19163512 19163917 -183164430 + L3 LINE CR1 947 1351 -226 720 330 48 0 chr4 19165659 19166011 -183162336 - L1MC4a LINE L1 -1934 5857 5489 1929 172 44 6 chr4 19166026 19166387 -183161960 - THE1C LTR MaLR 0 375 1 9298 142 14 44 chr4 19166387 19167618 -183160729 - THE1C-int LTR MaLR 0 1580 408 1991 153 0 0 chr4 19167618 19167905 -183160442 + AluSx SINE Alu 18 304 -8 9298 142 14 44 chr4 19167905 19168300 -183160047 - THE1C-int LTR MaLR -1172 408 3 786 179 40 35 chr4 19168302 19168475 -183159872 - THE1C LTR MaLR 0 375 202 21786 30 1 0 chr4 19168475 19171887 -183156460 + L1PA3 LINE L1 2735 6153 -2 955 152 54 11 chr4 19171995 19172179 -183156168 - THE1C LTR MaLR -183 192 1 358 319 106 24 chr4 19172194 19172401 -183155946 - L1MC4a LINE L1 -2330 5461 5238 346 311 61 17 chr4 19172817 19172997 -183155350 - L1MC4a LINE L1 -1553 4576 4389 680 292 39 34 chr4 19173163 19173629 -183154718 - HAL1 LINE L1 -873 1634 1167 342 253 25 19 chr4 19173985 19174147 -183154200 + L1M4 LINE L1 2251 2413 -3733 238 248 44 80 chr4 19174169 19174282 -183154065 - L1MC4a LINE L1 -5692 427 319 327 283 133 17 chr4 19174658 19174778 -183153569 + MIR SINE MIR 35 168 -94 562 267 149 0 chr4 19174907 19175102 -183153245 + MER58A DNA MER1_type 1 224 0 1559 195 59 49 chr4 19175358 19175748 -183152599 - MSTD LTR MaLR -2 394 1 336 343 47 83 chr4 19176032 19176478 -183151869 + L2 LINE L2 2838 3267 -5 331 292 97 26 chr4 19177444 19177557 -183150790 - MIR SINE MIR -117 145 25 1414 91 10 5 chr4 19177557 19177755 -183150592 - AluY SINE Alu -8 303 105 513 0 0 0 chr4 19177822 19177879 -183150468 + (CA)n Simple_repeat Simple_repeat 2 58 0 1319 230 113 57 chr4 19177967 19178480 -183149867 - MLT1F LTR MaLR 0 542 1 433 194 163 0 chr4 19178870 19178968 -183149379 + MIR3 SINE MIR 42 155 -53 1458 106 0 0 chr4 19179099 19179288 -183149059 + AluSg/x SINE Alu 114 302 -8 315 304 0 0 chr4 19179293 19179372 -183148975 - Charlie8 DNA MER1_type -2217 200 122 3255 115 4 10 chr4 19180375 19180878 -183147469 - LTR3b LTR ERVK 0 500 1 757 252 59 27 chr4 19180931 19181153 -183147194 + MIR SINE MIR 32 260 -2 236 275 14 29 chr4 19181799 19181868 -183146479 + L2 LINE L2 3244 3311 -2 640 287 36 15 chr4 19182892 19183087 -183145260 + MIR SINE MIR 2 200 -62 413 353 58 21 chr4 19183879 19184205 -183144142 - L2 LINE L2 -21 3292 2955 588 266 198 16 chr4 19185016 19185264 -183143083 - MLT1J2 LTR MaLR -120 330 38 255 299 78 66 chr4 19185368 19185702 -183142645 + MLT1K LTR MaLR 209 546 -42 369 0 0 0 chr4 19186360 19186401 -183141946 + (TTA)n Simple_repeat Simple_repeat 2 42 0 712 145 17 0 chr4 19186401 19186518 -183141829 - AluJb SINE Alu -192 120 2 737 275 111 30 chr4 19186532 19186738 -183141609 - MLT1J LTR MaLR -54 457 212 590 259 232 24 chr4 19186738 19187074 -183141273 - MLT1I LTR MaLR -3 406 1 737 275 111 30 chr4 19187074 19187201 -183141146 - MLT1J LTR MaLR -299 212 97 3192 238 55 58 chr4 19187217 19188411 -183139936 - L1MCb LINE L1 -4854 1191 1 304 248 34 34 chr4 19188460 19188577 -183139770 - MLT1J LTR MaLR -394 117 1 212 0 36 0 chr4 19189055 19189083 -183139264 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 574 275 101 52 chr4 19189110 19189455 -183138892 + MLT1J LTR MaLR 117 478 -33 1137 306 33 13 chr4 19189709 19190164 -183138183 - LTR16B LTR ERVL 0 464 1 28 29 0 0 chr4 19190632 19190667 -183137680 + AT_rich Low_complexity Low_complexity 1 35 0 39 50 0 0 chr4 19190700 19190760 -183137587 + AT_rich Low_complexity Low_complexity 1 60 0 1772 193 88 18 chr4 19191333 19191372 -183136975 - MSTA LTR MaLR 0 428 393 2085 128 0 0 chr4 19191372 19191697 -183136650 + AluSx SINE Alu 1 325 0 1772 193 88 18 chr4 19191697 19192056 -183136291 - MSTA LTR MaLR -35 393 1 295 275 132 0 chr4 19192181 19192272 -183136075 - MIR SINE MIR -5 257 155 2333 105 3 13 chr4 19192536 19192849 -183135498 + AluSg SINE Alu 1 310 0 434 279 103 7 chr4 19192860 19192996 -183135351 - MIR SINE MIR -102 160 12 328 323 82 0 chr4 19193006 19193164 -183135183 + MIR SINE MIR 77 247 -15 409 199 87 63 chr4 19193680 19193836 -183134511 + MIR SINE MIR 30 190 -62 237 279 64 109 chr4 19193972 19194232 -183134115 - L2 LINE L2 -167 3105 2857 336 24 0 0 chr4 19194232 19194273 -183134074 + (TG)n Simple_repeat Simple_repeat 2 42 0 237 279 64 109 chr4 19194273 19194295 -183134052 - L2 LINE L2 -415 2857 2836 1344 161 31 85 chr4 19194346 19194663 -183133684 - AluSx SINE Alu 0 312 13 295 327 110 36 chr4 19194720 19195056 -183133291 - L2 LINE L2 -683 2631 2271 193 333 109 14 chr4 19195303 19195441 -183132906 + MIR3 SINE MIR 16 166 -42 2506 63 0 0 chr4 19195444 19195744 -183132603 - AluY SINE Alu -11 300 1 615 274 25 19 chr4 19196446 19196603 -183131744 + MIR3 SINE MIR 30 187 -21 248 295 177 34 chr4 19196690 19196824 -183131523 - MIR SINE MIR -62 146 5 188 316 158 14 chr4 19197499 19197638 -183130709 - MIR SINE MIR -5 257 99 424 284 206 15 chr4 19198150 19198354 -183129993 + MIR SINE MIR 20 262 0 456 216 64 39 chr4 19199436 19199591 -183128756 - L1ME2 LINE L1 -11 6323 5998 22 35 0 0 chr4 19199913 19199942 -183128405 + AT_rich Low_complexity Low_complexity 1 29 0 577 310 73 52 chr4 19199956 19200565 -183127782 + L1M4c LINE L1 1007 3497 -2885 259 369 15 0 chr4 19200574 19200704 -183127643 + LTR16A LTR ERVL 18 149 -301 422 277 78 6 chr4 19200827 19200993 -183127354 + LTR16A LTR ERVL 261 438 -12 579 241 62 20 chr4 19201117 19201312 -183127035 - L1ME1 LINE L1 -5 6161 5959 351 284 31 86 chr4 19201336 19201498 -183126849 + MIR3 SINE MIR 11 163 -45 252 345 14 0 chr4 19201606 19201751 -183126596 - L1MEc LINE L1 -6188 208 62 1493 151 84 57 chr4 19201934 19202233 -183126114 + AluJo SINE Alu 6 312 0 359 328 21 42 chr4 19202290 19202482 -183125865 + L1M4c LINE L1 4516 4703 -1679 833 262 31 0 chr4 19202508 19202699 -183125648 - MIR SINE MIR -19 243 47 214 349 93 0 chr4 19203251 19203337 -183125010 - L3 LINE CR1 -932 645 552 503 249 120 60 chr4 19203488 19203705 -183124642 + MIR SINE MIR 33 262 0 700 168 14 7 chr4 19203864 19204007 -183124340 - L1MB4 LINE L1 -1 6179 6036 1080 261 45 45 chr4 19205597 19206199 -183122148 - L1MEd LINE L1 -4919 1200 599 436 325 102 41 chr4 19206411 19206725 -183121622 - L1MEd LINE L1 -5771 348 16 1073 152 0 0 chr4 19207571 19207736 -183120611 + THE1C LTR MaLR 1 165 -210 1549 70 0 14 chr4 19207830 19208043 -183120304 + THE1C LTR MaLR 166 375 0 312 247 11 0 chr4 19208254 19208347 -183120000 + MLT2D LTR ERVL 1 94 -320 34 24 0 0 chr4 19208349 19208390 -183119957 + AT_rich Low_complexity Low_complexity 1 41 0 1426 190 10 33 chr4 19208392 19208697 -183119650 + MLT2D LTR ERVL 109 406 -8 358 299 112 74 chr4 19208744 19209109 -183119238 + L2 LINE L2 2002 2380 -934 478 226 161 8 chr4 19209135 19209259 -183119088 + MIR SINE MIR 90 232 -30 382 235 214 0 chr4 19209318 19209416 -183118931 + L2 LINE L2 3191 3309 -4 461 312 78 34 chr4 19209431 19209636 -183118711 + L2 LINE L2 2435 2648 -666 193 323 111 0 chr4 19211599 19211698 -183116649 + MIR SINE MIR 37 146 -62 1401 164 95 29 chr4 19211716 19212063 -183116284 + L1MA7 LINE L1 5919 6288 -3 2070 121 13 16 chr4 19212900 19213213 -183115134 + AluSx SINE Alu 1 312 0 2137 127 3 3 chr4 19213295 19213625 -183114722 - THE1B LTR MaLR -33 331 2 5895 109 21 1 chr4 19213625 19214484 -183113863 - THE1B-int LTR MaLR 0 1580 705 2417 110 5 32 chr4 19214505 19214878 -183113469 - THE1B LTR MaLR -1 363 1 22 56 0 0 chr4 19214919 19214955 -183113392 + AT_rich Low_complexity Low_complexity 1 36 0 360 287 42 28 chr4 19215201 19215344 -183113003 + MER5A DNA MER1_type 21 165 -24 180 0 0 0 chr4 19215443 19215463 -183112884 + (CA)n Simple_repeat Simple_repeat 1 20 0 1774 156 20 7 chr4 19215687 19215989 -183112358 - AluJb SINE Alu -2 310 5 180 234 16 47 chr4 19216543 19216607 -183111740 + L2 LINE L2 3179 3240 -73 224 339 106 42 chr4 19216707 19217394 -183110953 + L2 LINE L2 976 1706 -1608 770 128 35 6 chr4 19217655 19217827 -183110520 + Charlie5 DNA MER1_type 2387 2563 -49 1155 196 113 38 chr4 19218678 19219122 -183109225 - Charlie1 DNA MER1_type 0 2761 2285 283 239 68 11 chr4 19219118 19219206 -183109141 - Charlie1 DNA MER1_type -2611 150 58 * 255 289 0 12 chr4 19219729 19219812 -183108535 + CT-rich Low_complexity Low_complexity 2 83 0 1827 146 10 10 chr4 19220157 19220451 -183107896 - AluJo SINE Alu -13 299 6 235 328 120 88 chr4 19220464 19220805 -183107542 + L2 LINE L2 2920 3271 -1 1027 218 74 11 chr4 19221647 19221931 -183106416 + MER58B DNA MER1_type 40 341 0 297 277 128 0 chr4 19222496 19222590 -183105757 + L2 LINE L2 3150 3255 -17 996 194 72 14 chr4 19222729 19222951 -183105396 + MER46A DNA MER2_type 1 235 -1 1044 211 0 0 chr4 19224562 19224770 -183103577 + MER3 DNA MER1_type 2 209 0 364 274 203 39 chr4 19224790 19224943 -183103404 + MER5A DNA MER1_type 12 189 0 1081 255 95 33 chr4 19224992 19225360 -183102987 - MLT1I LTR MaLR -18 391 1 312 280 173 13 chr4 19225411 19225561 -183102786 + L2 LINE L2 2591 2764 -550 396 281 42 30 chr4 19225609 19225776 -183102571 + MIR SINE MIR 68 236 -26 286 272 123 26 chr4 19225868 19225982 -183102365 + L2 LINE L2 3133 3257 -15 248 379 45 11 chr4 19226056 19226233 -183102114 + L2 LINE L2 2875 3057 -215 222 183 154 101 chr4 19226430 19226599 -183101748 - L2 LINE L2 -449 2865 2688 237 241 35 0 chr4 19226890 19226948 -183101399 - MLT1J LTR MaLR -49 462 403 340 294 88 7 chr4 19227157 19227293 -183101054 - MLT1J LTR MaLR -309 202 56 275 299 0 0 chr4 19227938 19228005 -183100342 - Charlie8 DNA MER1_type 0 2417 2351 2155 125 6 10 chr4 19228831 19229142 -183099205 + AluSg SINE Alu 1 310 0 228 369 48 0 chr4 19230651 19230754 -183097593 - L3 LINE CR1 -3 1574 1467 371 356 85 54 chr4 19231163 19232048 -183096299 - L2 LINE L2 -463 2851 1940 335 233 118 80 chr4 19232933 19233220 -183095127 + L1ME3A LINE L1 5873 6170 0 761 183 0 0 chr4 19233229 19233355 -183094992 + FLAM_C SINE Alu 1 126 -17 240 82 49 16 chr4 19233654 19233715 -183094632 + (TTATA)n Simple_repeat Simple_repeat 5 67 0 950 194 48 16 chr4 19233719 19233971 -183094376 + L1MB7 LINE L1 5906 6165 -19 1013 67 0 0 chr4 19234298 19234433 -183093914 - L1MA4A LINE L1 -532 5771 5637 * 1188 138 30 13 chr4 19234417 19234648 -183093699 + L1MA4A LINE L1 5764 5998 -305 2002 182 75 15 chr4 19234664 19235065 -183093282 - MSTB LTR MaLR 0 426 2 4346 185 27 1 chr4 19235071 19235918 -183092429 - MSTB-int LTR MaLR -5 1646 778 1856 141 73 102 chr4 19235922 19236363 -183091984 + MSTA LTR MaLR 1 428 0 3474 181 66 1 chr4 19236363 19237059 -183091288 + MSTA-int LTR MaLR 1 741 -910 334 186 0 0 chr4 19237059 19237118 -183091229 - MSTB LTR MaLR -367 59 1 1498 142 47 0 chr4 19237121 19237396 -183090951 + L1MA4A LINE L1 6012 6299 -4 435 292 119 37 chr4 19237574 19237942 -183090405 + L1MDa LINE L1 1715 2083 -839 22 0 0 0 chr4 19238065 19238087 -183090260 + AT_rich Low_complexity Low_complexity 1 22 0 450 269 91 53 chr4 19238372 19239174 -183089173 + L1MDa LINE L1 2493 3323 -3217 24114 136 22 11 chr4 19239231 19245543 -183082804 - L1PA8A LINE L1 -3 6443 1 1762 200 0 0 chr4 19245546 19245851 -183082496 - AluJb SINE Alu -7 305 1 656 280 86 79 chr4 19245904 19247370 -183080977 + L1MDa LINE L1 3468 4923 -1635 817 240 162 3 chr4 19247370 19247666 -183080681 + MER2 DNA MER2_type 1 343 -1 656 280 86 79 chr4 19247666 19247865 -183080482 + L1MDa LINE L1 4923 5119 -1439 2640 42 7 0 chr4 19247865 19248174 -183080173 - AluY SINE Alu 0 311 1 656 280 86 79 chr4 19248174 19248461 -183079886 + L1MDa LINE L1 5119 5403 -1155 3795 74 6 8 chr4 19248461 19248972 -183079375 + L1PA10 LINE L1 5657 6166 -2 656 280 86 79 chr4 19248972 19249041 -183079306 + L1MDa LINE L1 5403 5470 -1088 2103 121 0 10 chr4 19249041 19249381 -183078966 + AluSq SINE Alu 1 313 0 656 280 86 79 chr4 19249381 19249856 -183078491 + L1MDa LINE L1 5470 5981 -577 396 269 81 49 chr4 19249892 19250115 -183078232 - LTR16A1 LTR ERVL -12 445 216 8879 165 36 44 chr4 19250399 19252746 -183075601 - L1M2 LINE L1 -729 5471 3163 695 54 0 0 chr4 19252751 19252843 -183075504 - L1MA1 LINE L1 0 6302 6211 9609 184 19 5 chr4 19252845 19254919 -183073428 - L1 LINE L1 -790 6775 4672 10690 186 71 10 chr4 19254927 19257102 -183071245 - L1 LINE L1 -5241 2324 16 2662 221 30 9 chr4 19257114 19257893 -183070454 - L1M2 LINE L1 -2861 3173 2379 934 219 33 111 chr4 19257893 19258254 -183070093 + MER2 DNA MER2_type 2 334 -11 1094 248 69 29 chr4 19258256 19259067 -183069280 - L1M2 LINE L1 -3643 2391 1537 * 2604 262 62 13 chr4 19259061 19260330 -183068017 - L1M2 LINE L1 -4385 1650 331 1632 298 20 7 chr4 19260341 19260781 -183067566 - L1M2 LINE L1 -5506 449 4 279 302 11 37 chr4 19261173 19261281 -183067066 - MIR SINE MIR -73 135 54 2886 193 22 0 chr4 19262556 19263135 -183065212 - L1MC3 LINE L1 0 7785 7194 231 352 23 0 chr4 19263142 19263230 -183065117 - MLT1F1 LTR MaLR -443 124 35 378 169 39 85 chr4 19263230 19263329 -183065018 - L1MC3 LINE L1 -688 7166 7064 198 0 0 0 chr4 19263329 19263351 -183064996 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 2138 116 0 0 chr4 19263351 19263636 -183064711 - AluSg SINE Alu -25 285 1 378 169 39 85 chr4 19263636 19263665 -183064682 - L1MC3 LINE L1 -788 7066 7043 1157 217 59 28 chr4 19263665 19264016 -183064331 - MSTD LTR MaLR 0 396 1 7018 203 67 26 chr4 19264025 19265294 -183063053 - L1MC3 LINE L1 -750 5465 5646 2209 110 67 14 chr4 19265294 19265640 -183062707 + THE1B LTR MaLR 1 364 0 7018 203 67 26 chr4 19265640 19266480 -183061867 - L1MC3 LINE L1 -568 5647 4843 1416 251 7 2 chr4 19266486 19266904 -183061443 - L1MC3 LINE L1 -1329 4886 4467 * 2893 257 29 23 chr4 19266899 19268104 -183060243 - L1MC3 LINE L1 -3010 3205 2040 1294 150 5 0 chr4 19268120 19268320 -183060027 + L1PA16 LINE L1 2 202 -6647 11776 165 31 42 chr4 19268320 19270783 -183057564 + L1PA16 LINE L1 734 3157 -3692 468 51 0 0 chr4 19270783 19270842 -183057505 + (CA)n Simple_repeat Simple_repeat 2 60 0 305 130 0 0 chr4 19270843 19270889 -183057458 + L1 LINE L1 4302 4347 -2502 227 232 0 53 chr4 19270959 19271054 -183057293 - L1MC4 LINE L1 -1339 6703 6614 638 211 0 13 chr4 19271057 19271213 -183057134 + (TATATG)n Simple_repeat Simple_repeat 3 156 0 304 267 0 0 chr4 19271217 19271307 -183057040 + L1MC4 LINE L1 6614 6703 -1339 396 200 0 0 chr4 19271307 19271392 -183056955 + (TA)n Simple_repeat Simple_repeat 2 86 0 242 278 0 0 chr4 19271393 19271483 -183056864 + L1MC4 LINE L1 6614 6703 -1339 369 232 0 0 chr4 19271483 19271578 -183056769 + (TA)n Simple_repeat Simple_repeat 2 96 0 312 228 0 22 chr4 19271583 19271675 -183056672 - L1MC4 LINE L1 -1339 6703 6614 360 210 0 0 chr4 19271676 19271757 -183056590 + (TA)n Simple_repeat Simple_repeat 2 82 0 257 228 22 43 chr4 19271757 19271849 -183056498 + L1MC4 LINE L1 6614 6703 -1339 8808 192 20 99 chr4 19271880 19272917 -183055430 + L1PA16 LINE L1 3151 4269 -2600 180 0 0 0 chr4 19272917 19272937 -183055410 + (CAA)n Simple_repeat Simple_repeat 2 21 0 8808 192 20 99 chr4 19272937 19275798 -183052549 + L1PA16 LINE L1 4269 6715 -154 1235 217 54 13 chr4 19275808 19276184 -183052163 - L1MDb LINE L1 -4992 1437 1046 186 289 246 0 chr4 19276223 19276337 -183052010 - MIR3 SINE MIR -31 177 36 1589 197 42 36 chr4 19276497 19276835 -183051512 + MLT1B LTR MaLR 28 370 -20 1862 175 55 40 chr4 19276835 19277257 -183051090 + MSTC LTR MaLR 1 428 0 1589 197 42 36 chr4 19277257 19277279 -183051068 + MLT1B LTR MaLR 370 390 0 917 219 10 26 chr4 19278123 19278315 -183050032 - MER5A DNA MER1_type 0 189 1 228 326 22 11 chr4 19278352 19278441 -183049906 + CT-rich Low_complexity Low_complexity 5 94 0 192 40 0 0 chr4 19278442 19278467 -183049880 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 4747 48 7 2 chr4 19278475 19279062 -183049285 - L1PA7 LINE L1 -17 6137 5548 489 318 39 13 chr4 19279979 19280133 -183048214 + MIR3 SINE MIR 42 199 -9 420 270 17 9 chr4 19280653 19280768 -183047579 - MIR SINE MIR -1 261 146 368 249 76 104 chr4 19280779 19281068 -183047279 - L2 LINE L2 -12 3301 3021 278 323 140 27 chr4 19281849 19282035 -183046312 + LTR67 LTR ERVL 98 304 -253 787 193 0 0 chr4 19282248 19282393 -183045954 + AluJb SINE Alu 162 306 -6 209 328 0 0 chr4 19283104 19283171 -183045176 + CT-rich Low_complexity Low_complexity 2 68 0 21 36 0 0 chr4 19283473 19283501 -183044846 + AT_rich Low_complexity Low_complexity 1 28 0 268 294 110 48 chr4 19284133 19284279 -183044068 + MIR3 SINE MIR 3 157 -51 25 31 0 0 chr4 19284465 19284497 -183043850 + AT_rich Low_complexity Low_complexity 1 32 0 1129 263 57 15 chr4 19284675 19285226 -183043121 + L1ME3A LINE L1 5559 6160 -2 1214 299 71 43 chr4 19285544 19286202 -183042145 + L1MEc LINE L1 39 715 -5681 1118 219 29 13 chr4 19286212 19286656 -183041691 + MLT1D LTR MaLR 1 505 0 2784 241 88 26 chr4 19286660 19287755 -183040592 + L1MEc LINE L1 724 1885 -4511 233 210 0 74 chr4 19288350 19288431 -183039916 + L1ME1 LINE L1 5927 6001 -165 664 196 12 37 chr4 19288451 19288614 -183039733 + L1MA10 LINE L1 6169 6327 -7 1482 173 0 64 chr4 19289065 19289390 -183038957 - AluJb SINE Alu 0 311 6 292 297 80 85 chr4 19289574 19289786 -183038561 + MIR SINE MIR 28 238 -24 267 241 159 0 chr4 19290615 19290725 -183037622 + MIR SINE MIR 4 132 -105 535 209 27 91 chr4 19290726 19290913 -183037434 - MLT1D LTR MaLR -310 195 21 352 305 205 35 chr4 19292280 19292539 -183035808 + L2 LINE L2 2472 2774 -540 788 266 54 48 chr4 19292576 19292911 -183035436 - MLT1I LTR MaLR -72 337 1 250 139 0 0 chr4 19293009 19293052 -183035295 + L2 LINE L2 2933 2975 -339 1338 206 4 0 chr4 19293071 19293328 -183035019 + L1MB7 LINE L1 5884 6141 -43 1978 107 76 3 chr4 19293691 19293982 -183034365 - AluSq SINE Alu -1 312 1 368 366 101 21 chr4 19294070 19294535 -183033812 + L2 LINE L2 2807 3308 -5 447 289 81 55 chr4 19294553 19294788 -183033559 + MIR SINE MIR 18 258 -4 370 290 71 19 chr4 19295453 19295633 -183032714 + MIR SINE MIR 18 198 -57 306 252 148 58 chr4 19295747 19295874 -183032473 - MIR SINE MIR -70 192 47 2574 94 14 3 chr4 19295874 19296234 -183032113 + THE1B LTR MaLR 1 364 0 306 252 148 58 chr4 19296234 19296261 -183032086 - MIR SINE MIR -215 47 24 249 237 134 31 chr4 19297163 19297260 -183031087 + MIR SINE MIR 48 154 -108 * 716 226 161 5 chr4 19297253 19297439 -183030908 - MIR SINE MIR 0 262 48 207 351 135 0 chr4 19298111 19298296 -183030051 + MIR SINE MIR 37 246 -16 372 301 98 54 chr4 19298305 19298508 -183029839 + LTR67 LTR ERVL 5 216 -341 1255 111 0 0 chr4 19298957 19299128 -183029219 - AluSc SINE Alu -11 298 128 326 291 108 25 chr4 19299271 19299429 -183028918 - MIR SINE MIR -89 173 3 40540 55 2 7 chr4 19299935 19305895 -183022452 + L1PA4 LINE L1 221 6154 -1 192 217 0 0 chr4 19306075 19306121 -183022226 + CT-rich Low_complexity Low_complexity 3 48 0 237 152 0 0 chr4 19306699 19306745 -183021602 - LTR66 LTR ERVL -171 439 394 * 238 152 0 0 chr4 19306705 19306751 -183021596 + LTR66 LTR ERVL 394 439 -171 768 196 14 7 chr4 19306972 19307115 -183021232 + AluSc SINE Alu 137 280 -29 409 291 89 30 chr4 19307468 19307705 -183020642 - L1ME LINE L1 -341 5780 5530 1714 175 3 29 chr4 19308142 19308451 -183019896 + AluJb SINE Alu 3 303 -9 377 284 146 44 chr4 19308685 19309138 -183019209 - L1ME LINE L1 -367 5754 5255 250 255 94 38 chr4 19309173 19309279 -183019068 - L2 LINE L2 -589 2725 2614 25 65 0 0 chr4 19309390 19309436 -183018911 + AT_rich Low_complexity Low_complexity 1 46 0 301 281 219 6 chr4 19310003 19310163 -183018184 + MIR SINE MIR 43 236 -26 754 282 23 14 chr4 19310195 19310411 -183017936 - MIR SINE MIR -32 230 13 530 263 15 0 chr4 19310475 19310608 -183017739 - MIR3 SINE MIR -38 170 36 2360 91 0 25 chr4 19310858 19311176 -183017171 - AluSg SINE Alu 0 310 1 185 333 15 0 chr4 19311794 19311860 -183016487 - L3 LINE CR1 -83 1494 1428 243 318 136 0 chr4 19311894 19312026 -183016321 - MIR SINE MIR -13 249 100 686 256 143 42 chr4 19312338 19312406 -183015941 + MIR SINE MIR 1 61 -201 2561 189 35 21 chr4 19312406 19312873 -183015474 + MLT2B1 LTR ERVL 1 460 -60 252 0 0 0 chr4 19312873 19312901 -183015446 + (TC)n Simple_repeat Simple_repeat 2 29 0 225 0 0 0 chr4 19312900 19312925 -183015422 + (TA)n Simple_repeat Simple_repeat 1 25 0 * 2561 189 35 21 chr4 19312901 19312929 -183015418 + MLT2B1 LTR ERVL 460 486 -34 180 0 0 0 chr4 19312929 19312949 -183015398 + (TC)n Simple_repeat Simple_repeat 2 21 0 * 207 114 0 0 chr4 19312948 19312983 -183015364 + (TA)n Simple_repeat Simple_repeat 2 36 0 2561 189 35 21 chr4 19312949 19313023 -183015324 + MLT2B1 LTR ERVL 486 520 0 686 256 143 42 chr4 19313023 19313192 -183015155 + MIR SINE MIR 61 262 0 567 337 28 31 chr4 19313880 19314135 -183014212 + MIR SINE MIR 7 260 -2 572 90 0 11 chr4 19314299 19314388 -183013959 + (TCCC)n Simple_repeat Simple_repeat 3 90 0 615 238 5 16 chr4 19315218 19315407 -183012940 - MER53 DNA DNA -2 187 1 183 135 27 27 chr4 19315504 19315541 -183012806 + L2 LINE L2 3228 3264 -8 3327 161 38 10 chr4 19316229 19316911 -183011436 - L1MA8 LINE L1 -22 6269 5569 268 282 0 105 chr4 19317254 19317378 -183010969 + L2 LINE L2 3201 3311 -2 199 286 16 16 chr4 19317935 19317998 -183010349 + L2 LINE L2 3209 3271 -1 1980 137 135 5 chr4 19318401 19318780 -183009567 + MSTA LTR MaLR 1 428 0 736 309 17 4 chr4 19319134 19319367 -183008980 + MIR SINE MIR 13 248 -14 210 229 169 0 chr4 19319621 19319704 -183008643 + L2 LINE L2 3217 3313 0 495 274 185 2 chr4 19320854 19321054 -183007293 - MIR SINE MIR -14 248 11 23 0 0 0 chr4 19321435 19321458 -183006889 + AT_rich Low_complexity Low_complexity 1 23 0 196 337 20 20 chr4 19322083 19322184 -183006163 + L3 LINE CR1 1187 1287 -290 372 314 176 0 chr4 19322280 19322433 -183005914 + L3 LINE CR1 1295 1474 -103 4505 185 49 11 chr4 19324225 19324691 -183003656 - L1MA9 LINE L1 -17 6295 5848 198 0 0 0 chr4 19324691 19324713 -183003634 + (TG)n Simple_repeat Simple_repeat 2 23 0 4505 185 49 11 chr4 19324713 19326246 -183002101 - L1MA9 LINE L1 -464 5848 4216 12606 32 1 0 chr4 19326247 19327823 -183000524 - L1PA3 LINE L1 -1269 4877 3300 7534 33 5 0 chr4 19327826 19329099 -182999248 + L1PA3 LINE L1 4879 6155 0 4318 183 64 43 chr4 19329103 19330335 -182998012 - L1MA9 LINE L1 -1926 4220 2963 242 253 98 16 chr4 19330327 19330521 -182997826 - L1M4c LINE L1 -4140 2072 1863 * 345 316 24 42 chr4 19330587 19330755 -182997592 - L1M4c LINE L1 -4161 2050 1532 447 137 0 0 chr4 19330755 19330828 -182997519 - AluS SINE Alu -239 73 1 2939 242 101 19 chr4 19330828 19331442 -182996905 - L1M4c LINE L1 -4567 1574 853 2551 138 33 2 chr4 19331442 19331861 -182996486 + MER57B LTR ERV1 3 434 0 2939 242 101 19 chr4 19331861 19332195 -182996152 - L1M4c LINE L1 -5288 853 548 1549 261 61 0 chr4 19332210 19332605 -182995742 - L1M4c LINE L1 -5680 461 43 225 0 0 0 chr4 19332778 19332803 -182995544 + (T)n Simple_repeat Simple_repeat 1 25 0 248 300 50 33 chr4 19335152 19335272 -182993075 - L2 LINE L2 -217 3055 2934 270 373 113 10 chr4 19335646 19335850 -182992497 + L2 LINE L2 2184 2408 -906 353 296 7 0 chr4 19336121 19336256 -182992091 + MER103 DNA DNA 21 156 -10 21 0 0 0 chr4 19337055 19337076 -182991271 + AT_rich Low_complexity Low_complexity 1 21 0 27383 120 30 66 chr4 19337175 19343573 -182984774 + L1PA8 LINE L1 12 6169 -3 450 235 72 48 chr4 19345133 19345394 -182982953 - MER52A LTR ERV1 -44 750 579 748 268 0 6 chr4 19345452 19345631 -182982716 - LTR28 LTR ERV1 -842 178 1 356 287 91 7 chr4 19345664 19345807 -182982540 + MIR SINE MIR 12 166 -96 * 371 273 83 16 chr4 19345801 19345922 -182982425 + L2 LINE L2 3144 3272 0 201 296 0 42 chr4 19346079 19346150 -182982197 + L2 LINE L2 3020 3087 -185 265 331 147 12 chr4 19347068 19347319 -182981028 + MLT1J2 LTR MaLR 45 329 -121 878 276 77 84 chr4 19348170 19348767 -182979580 + MLT1E LTR MaLR 1 593 0 402 313 28 34 chr4 19349937 19350116 -182978231 + MIR SINE MIR 3 180 -82 485 234 13 84 chr4 19350153 19350307 -182978040 + MIR SINE MIR 13 155 -107 180 0 0 0 chr4 19350307 19350327 -182978020 + (TAA)n Simple_repeat Simple_repeat 2 21 0 218 330 116 42 chr4 19350349 19350564 -182977783 - L2 LINE L2 0 3313 3083 997 289 28 33 chr4 19350634 19350953 -182977394 - L2 LINE L2 -248 3065 2750 2070 87 10 7 chr4 19350953 19351241 -182977106 - AluY SINE Alu -13 298 10 997 289 28 33 chr4 19351241 19351355 -182976992 - L2 LINE L2 -563 2750 2637 311 250 24 0 chr4 19351388 19351472 -182976875 + MLT1J2 LTR MaLR 67 152 -298 1140 214 36 50 chr4 19351472 19351914 -182976433 - LTR47B LTR ERVL 0 443 9 997 289 28 35 chr4 19352483 19352781 -182975566 - L2 LINE L2 -269 3044 2750 2403 65 0 3 chr4 19352781 19353071 -182975276 - AluY SINE Alu -13 298 10 997 289 28 35 chr4 19353071 19353185 -182975162 - L2 LINE L2 -563 2750 2637 495 247 43 52 chr4 19353218 19353302 -182975045 + MLT1J2 LTR MaLR 67 150 -300 1397 202 49 64 chr4 19353302 19353752 -182974595 - LTR47B LTR ERVL 0 443 1 495 247 43 52 chr4 19353752 19353972 -182974375 + MLT1J2 LTR MaLR 150 450 0 2377 295 110 15 chr4 19353972 19354918 -182973429 - L2 LINE L2 -678 2636 1601 600 85 0 12 chr4 19354986 19355068 -182973279 - 7SLRNA srpRNA srpRNA -10 310 230 189 132 0 0 chr4 19355227 19355265 -182973082 + (CA)n Simple_repeat Simple_repeat 1 38 0 234 215 42 125 chr4 19355463 19355607 -182972740 - L1ME2 LINE L1 -9 6155 6024 296 237 84 5 chr4 19355610 19355740 -182972607 - L1MB7 LINE L1 -226 5938 5803 302 378 13 19 chr4 19356833 19356989 -182971358 - MIR SINE MIR -41 221 67 239 317 125 9 chr4 19358172 19358595 -182969752 + HAL1 LINE L1 1109 1580 -927 1066 229 16 29 chr4 19358661 19358906 -182969441 + AluJo SINE Alu 67 308 -4 243 243 144 33 chr4 19359056 19359451 -182968896 + L1ME LINE L1 2861 3299 -2847 29 0 0 0 chr4 19359716 19359745 -182968602 + AT_rich Low_complexity Low_complexity 1 29 0 356 303 76 14 chr4 19359767 19359912 -182968435 + L1ME LINE L1 3697 3850 -2296 1678 117 12 4 chr4 19359965 19360205 -182968142 + AluSq SINE Alu 16 257 -56 250 45 45 0 chr4 19360210 19360254 -182968093 + (CAAA)n Simple_repeat Simple_repeat 4 49 0 470 238 50 0 chr4 19360365 19360466 -182967881 - MER81 DNA DNA 0 114 9 659 313 89 72 chr4 19360670 19361693 -182966654 + L1ME LINE L1 4258 5335 -811 382 344 75 24 chr4 19361723 19362139 -182966208 + L1ME LINE L1 5374 5810 -360 2876 210 45 22 chr4 19362167 19362457 -182965890 - MER82 DNA MER2_type 0 653 371 5729 41 26 4 chr4 19362457 19363184 -182965163 - L1PA4 LINE L1 0 6155 5413 2876 210 45 22 chr4 19363184 19363530 -182964817 - MER82 DNA MER2_type -282 371 2 263 143 0 36 chr4 19363531 19363587 -182964760 + (TATATG)n Simple_repeat Simple_repeat 1 54 0 23 0 0 0 chr4 19363895 19363918 -182964429 + AT_rich Low_complexity Low_complexity 1 23 0 1910 160 7 0 chr4 19364033 19364327 -182964020 - AluSx SINE Alu -11 301 6 590 162 73 7 chr4 19364476 19364612 -182963735 + L1MC3 LINE L1 7610 7754 -31 288 305 217 18 chr4 19364790 19365016 -182963331 + L3 LINE CR1 1232 1502 -75 296 319 7 58 chr4 19365143 19365281 -182963066 - L2 LINE L2 0 3313 3183 187 258 72 103 chr4 19365883 19365980 -182962367 - MIR SINE MIR -141 121 28 277 364 7 49 chr4 19366040 19366183 -182962164 - L2 LINE L2 0 3272 3136 1476 209 0 0 chr4 19366241 19366494 -182961853 + AluJo SINE Alu 22 274 -38 960 266 70 3 chr4 19366702 19367029 -182961318 - L1M4 LINE L1 -1128 5018 4670 1050 132 24 0 chr4 19367053 19367220 -182961127 - THE1C LTR MaLR -202 173 3 8129 116 48 15 chr4 19367226 19368457 -182959890 - THE1C-int LTR MaLR -11 1569 299 1769 226 39 20 chr4 19368454 19368945 -182959402 + L1M4 LINE L1 4550 5049 -1097 * 22 0 0 0 chr4 19369097 19369119 -182959228 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr4 19369215 19369235 -182959112 + (TAAAAA)n Simple_repeat Simple_repeat 2 21 0 225 0 0 0 chr4 19370795 19370820 -182957527 + (T)n Simple_repeat Simple_repeat 1 25 0 24 0 0 0 chr4 19370921 19370945 -182957402 + AT_rich Low_complexity Low_complexity 1 24 0 361 341 34 23 chr4 19371106 19371282 -182957065 + MIR SINE MIR 50 227 -35 22 35 0 0 chr4 19371304 19371333 -182957014 + AT_rich Low_complexity Low_complexity 1 29 0 203 255 39 0 chr4 19371902 19371953 -182956394 - MIR SINE MIR -54 208 156 226 268 18 0 chr4 19372328 19372384 -182955963 - L2 LINE L2 0 3313 3257 6095 95 36 2 chr4 19372427 19372882 -182955465 - L1PA14 LINE L1 -3 6158 5720 2527 123 0 3 chr4 19372882 19373247 -182955100 - THE1B LTR MaLR 0 364 1 6095 95 36 2 chr4 19373247 19374757 -182953590 - L1PA14 LINE L1 -441 5720 4157 8110 154 18 29 chr4 19374757 19376201 -182952146 + L1PA12 LINE L1 1826 3241 -4343 5901 25 33 1 chr4 19376201 19376781 -182951566 + L1PA4 LINE L1 5411 6020 -135 189 0 0 0 chr4 19376781 19376802 -182951545 + (AGGGGG)n Simple_repeat Simple_repeat 2 22 0 5901 25 33 1 chr4 19376802 19376940 -182951407 + L1PA4 LINE L1 6020 6152 -3 8110 154 18 29 chr4 19376940 19377278 -182951069 + L1PA12 LINE L1 3241 3581 -4003 801 132 85 58 chr4 19377278 19377467 -182950880 + MER3 DNA MER1_type 10 203 -6 21 57 0 0 chr4 19377851 19377886 -182950461 + AT_rich Low_complexity Low_complexity 1 35 0 314 348 66 6 chr4 19377993 19378174 -182950173 + L2 LINE L2 2768 2959 -355 474 248 102 39 chr4 19378235 19378441 -182949906 + L2 LINE L2 3095 3313 0 311 286 82 53 chr4 19378834 19379005 -182949342 + MIR SINE MIR 12 187 -75 8062 176 34 28 chr4 19379460 19382331 -182946016 + L1PA8 LINE L1 11 3826 -3758 32801 40 2 1 chr4 19382334 19387176 -182941171 + L1PA4 LINE L1 1336 6182 0 19079 111 5 2 chr4 19387177 19390928 -182937419 + L1PA8 LINE L1 3818 7596 -14 561 288 41 54 chr4 19391283 19391578 -182936769 + L2 LINE L2 2947 3237 -76 261 0 0 0 chr4 19391626 19391655 -182936692 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 424 304 27 20 chr4 19392593 19392741 -182935606 - MIR SINE MIR -100 162 14 272 288 120 33 chr4 19393686 19393870 -182934477 + MIR SINE MIR 63 262 0 580 282 40 83 chr4 19393946 19394073 -182934274 - L2 LINE L2 0 3313 3182 2248 196 34 16 chr4 19394073 19394569 -182933778 - MLT1D LTR MaLR 0 505 1 580 282 40 83 chr4 19394569 19394767 -182933580 - L2 LINE L2 -131 3182 3002 1232 202 108 38 chr4 19394797 19395138 -182933209 + MLT1A1 LTR MaLR 1 365 0 306 131 0 0 chr4 19395904 19395965 -182932382 - L1PA16 LINE L1 -8 6158 6098 4550 134 3 8 chr4 19395966 19396677 -182931670 - L1PA16 LINE L1 -105 6061 5355 614 264 18 6 chr4 19396696 19396863 -182931484 + MIR SINE MIR 89 257 -5 2305 96 3 6 chr4 19397050 19397362 -182930985 + AluSq SINE Alu 3 313 0 24 32 0 0 chr4 19397608 19397639 -182930708 + AT_rich Low_complexity Low_complexity 1 31 0 513 279 81 25 chr4 19398116 19398439 -182929908 + L1M4 LINE L1 2231 2571 -3575 21 0 0 0 chr4 19398439 19398460 -182929887 + AT_rich Low_complexity Low_complexity 1 21 0 211 409 0 11 chr4 19398511 19398599 -182929748 - L3 LINE CR1 -102 1475 1389 215 338 0 0 chr4 19398663 19398737 -182929610 - MIR SINE MIR -105 103 30 402 354 51 29 chr4 19400159 19400475 -182927872 - L2 LINE L2 -2571 743 421 290 333 38 38 chr4 19400998 19401130 -182927217 + MIR3 SINE MIR 2 133 -75 213 282 24 89 chr4 19401481 19401605 -182926742 + MIR SINE MIR 92 207 -55 251 275 9 0 chr4 19402855 19402964 -182925383 + CT-rich Low_complexity Low_complexity 2 111 0 2238 175 60 38 chr4 19403356 19403859 -182924488 - MER67D LTR ERV1 0 514 1 888 285 50 42 chr4 19403923 19404284 -182924063 - MLT1K LTR MaLR -44 544 181 3198 34 3 0 chr4 19404998 19405380 -182922967 - L1PA3 LINE L1 -3 6152 5770 239 283 20 71 chr4 19405754 19405853 -182922494 + MIR SINE MIR 54 147 -61 282 29 0 0 chr4 19406526 19406561 -182921786 + (TG)n Simple_repeat Simple_repeat 2 36 0 1849 142 26 29 chr4 19406595 19406906 -182921441 + AluSx SINE Alu 3 312 0 353 312 101 17 chr4 19406960 19407200 -182921147 - MLT1J2 LTR MaLR -170 276 1 536 309 39 11 chr4 19408457 19408638 -182919709 - MIR SINE MIR -6 256 71 838 288 75 69 chr4 19409182 19410048 -182918299 + L1MEc LINE L1 311 1181 -5215 271 143 0 36 chr4 19410116 19410172 -182918175 + L1MC1 LINE L1 6280 6333 0 2040 229 65 22 chr4 19410173 19410851 -182917496 + L1MEc LINE L1 2343 3049 -3166 1182 231 61 26 chr4 19410853 19411195 -182917152 - MLT1A2 LTR MaLR -2 372 19 3883 190 14 1 chr4 19411258 19411989 -182916358 - L1MB3 LINE L1 -124 6059 5320 443 243 32 11 chr4 19411985 19412174 -182916173 + L1MEc LINE L1 3072 3264 -2951 * 218 363 0 0 chr4 19412243 19412323 -182916024 + L2 LINE L2 3230 3309 -4 216 324 78 29 chr4 19414503 19414605 -182913742 - MIR SINE MIR -70 138 32 240 309 167 29 chr4 19414883 19415086 -182913261 - MIR SINE MIR -22 240 6 322 318 11 0 chr4 19415110 19415198 -182913149 - MIR SINE MIR -116 146 58 288 263 53 84 chr4 19416753 19416943 -182911404 - L1ME LINE L1 -336 5785 5602 258 312 56 91 chr4 19417177 19417338 -182911009 - MIR SINE MIR -20 242 90 906 172 60 51 chr4 19417338 19417553 -182910794 - MER20 DNA MER1_type 0 219 3 258 312 56 91 chr4 19417553 19417622 -182910725 - MIR SINE MIR -172 90 20 493 263 26 26 chr4 19417927 19418079 -182910268 + MIR SINE MIR 9 160 -102 1694 175 38 56 chr4 19418079 19418474 -182909873 - MLT1B LTR MaLR -2 388 1 2009 73 0 0 chr4 19418520 19418779 -182909568 - L1PA12 LINE L1 -2 6166 5908 1277 60 18 0 chr4 19418779 19418946 -182909401 + L1P4 LINE L1 5424 5593 -575 1574 136 4 4 chr4 19419034 19419291 -182909056 - L1PA16 LINE L1 -9 6157 5901 230 298 0 0 chr4 19419646 19419730 -182908617 + (TA)n Simple_repeat Simple_repeat 2 85 0 410 285 111 31 chr4 19419820 19420171 -182908176 - L1ME4a LINE L1 -213 5908 5530 1694 166 3 30 chr4 19420616 19420917 -182907430 + AluJb SINE Alu 12 304 -8 377 284 146 44 chr4 19421151 19421604 -182906743 - L1ME LINE L1 -367 5754 5255 250 255 94 38 chr4 19421639 19421745 -182906602 - L2 LINE L2 -589 2725 2614 25 65 0 0 chr4 19421856 19421902 -182906445 + AT_rich Low_complexity Low_complexity 1 46 0 1332 273 69 34 chr4 19422097 19422244 -182906103 - MLT1J LTR MaLR 0 511 371 2177 129 0 3 chr4 19422244 19422547 -182905800 - AluSq SINE Alu -11 302 1 1332 273 69 34 chr4 19422547 19422893 -182905454 - MLT1J LTR MaLR -140 371 1 254 313 12 0 chr4 19423047 19423127 -182905220 + MIR3 SINE MIR 114 194 -14 416 165 13 0 chr4 19424052 19424131 -182904216 - MER116 DNA Mariner 0 80 1 363 78 0 0 chr4 19424266 19424317 -182904030 + (TA)n Simple_repeat Simple_repeat 2 52 0 26 50 0 0 chr4 19424356 19424396 -182903951 + AT_rich Low_complexity Low_complexity 1 40 0 320 0 25 0 chr4 19424797 19424837 -182903510 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 237 312 70 21 chr4 19426032 19426132 -182902215 + MIR SINE MIR 3 107 -101 2425 64 0 0 chr4 19426318 19426615 -182901732 - AluY SINE Alu -14 297 1 248 394 43 22 chr4 19426710 19426941 -182901406 - L2 LINE L2 -89 3183 2948 235 204 56 0 chr4 19427116 19427170 -182901177 - MER58 DNA MER1_type -2140 280 224 448 172 11 23 chr4 19427232 19427319 -182901028 + MIR SINE MIR 69 154 -108 1821 268 82 30 chr4 19427956 19428819 -182899528 + L1ME1 LINE L1 36 943 -5453 4624 244 75 39 chr4 19428825 19430191 -182898156 + L1ME1 LINE L1 989 2305 -3910 469 139 13 0 chr4 19430191 19430270 -182898077 + MADE1 DNA Mariner 1 80 0 4624 244 75 39 chr4 19430270 19431963 -182896384 + L1ME1 LINE L1 2305 4142 -2073 2484 119 17 6 chr4 19431963 19432323 -182896024 - THE1B LTR MaLR 0 364 1 4624 244 75 39 chr4 19432323 19432482 -182895865 + L1ME1 LINE L1 4142 4294 -1921 2436 208 127 51 chr4 19432478 19432496 -182895851 + L1ME1 LINE L1 5399 5414 -821 * 2089 160 20 3 chr4 19432496 19432852 -182895495 + MLT1A1 LTR MaLR 3 364 -1 2436 208 127 51 chr4 19432852 19433603 -182894744 + L1ME1 LINE L1 5414 6227 -8 230 274 147 11 chr4 19435179 19435274 -182893073 - L2 LINE L2 -2 3311 3204 444 343 11 17 chr4 19436192 19436373 -182891974 - MIR SINE MIR -34 228 49 616 289 83 4 chr4 19436523 19436765 -182891582 + MIR SINE MIR 2 262 0 24 32 0 0 chr4 19437008 19437039 -182891308 + AT_rich Low_complexity Low_complexity 1 31 0 2254 98 0 0 chr4 19437094 19437403 -182890944 - AluSq SINE Alu 0 309 1 388 306 20 48 chr4 19437578 19437725 -182890622 - MIR3 SINE MIR -10 198 56 310 278 0 0 chr4 19437925 19437997 -182890350 - MIR SINE MIR 0 262 191 1891 190 35 47 chr4 19438319 19438783 -182889564 + LTR55 LTR ERV 1 458 -90 3132 171 23 18 chr4 19440532 19441133 -182887214 + MER6A DNA MER2_type 1 604 -1 422 307 58 54 chr4 19441192 19441397 -182886950 + MIR SINE MIR 21 228 -34 441 284 139 29 chr4 19441676 19441884 -182886463 - MIR SINE MIR -18 244 14 339 338 15 15 chr4 19442280 19442416 -182885931 - MIR3 SINE MIR -4 204 69 474 233 94 19 chr4 19443310 19443469 -182884878 + MLT1J2 LTR MaLR 5 175 -275 265 266 38 0 chr4 19443618 19443697 -182884650 + MLT1I LTR MaLR 305 386 -23 851 272 16 20 chr4 19444329 19444579 -182883768 - MIR SINE MIR -13 249 1 500 272 94 19 chr4 19444611 19444824 -182883523 - MIR SINE MIR -3 259 31 187 315 9 117 chr4 19444984 19445095 -182883252 + L2 LINE L2 2944 3042 -230 215 267 33 0 chr4 19445853 19445913 -182882434 + CT-rich Low_complexity Low_complexity 4 65 0 2203 180 64 104 chr4 19446520 19447193 -182881154 - MLT1E1 LTR MaLR 0 654 9 1305 262 69 10 chr4 19447470 19448140 -182880207 - L2 LINE L2 0 3313 2598 730 251 80 42 chr4 19448164 19448550 -182879797 - MER65A LTR ERV1 -44 401 1 828 294 83 65 chr4 19448551 19449010 -182879337 - MLT1E2 LTR MaLR -156 470 4 255 152 0 0 chr4 19449016 19449062 -182879285 + (CA)n Simple_repeat Simple_repeat 1 46 0 2243 208 64 17 chr4 19449154 19449688 -182878659 - MER21B LTR ERV1 -58 805 247 351 223 5 10 chr4 19449925 19450141 -182878206 + A-rich Low_complexity Low_complexity 1 214 0 6983 173 14 31 chr4 19450159 19451659 -182876688 + L1P LINE L1 847 2321 -3825 23 0 0 0 chr4 19453148 19453171 -182875176 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr4 19453259 19453287 -182875060 + AT_rich Low_complexity Low_complexity 1 28 0 201 147 0 0 chr4 19453397 19453431 -182874916 + (TTCC)n Simple_repeat Simple_repeat 3 36 0 3909 132 58 0 chr4 19453646 19454282 -182874065 + L1PA14 LINE L1 5484 6156 -5 2170 118 0 3 chr4 19454284 19454581 -182873766 + AluSc SINE Alu 1 296 -13 734 219 85 0 chr4 19454641 19454805 -182873542 + AluJo SINE Alu 118 295 -17 33156 69 82 2 chr4 19455719 19460195 -182868152 - L1P LINE L1 -1308 4838 2 248 331 13 7 chr4 19460370 19460524 -182867823 + L1M4 LINE L1 4456 4610 -1536 659 320 71 56 chr4 19460537 19461018 -182867329 + L2 LINE L2 2824 3311 -2 1364 165 112 8 chr4 19461239 19461499 -182866848 - L1MC1 LINE L1 -17 6316 6030 980 198 26 0 chr4 19461499 19461691 -182866656 + MIR SINE MIR 66 262 0 988 231 30 0 chr4 19461819 19462083 -182866264 + L1MA4 LINE L1 6024 6295 -5 217 323 20 20 chr4 19462379 19462478 -182865869 - L2 LINE L2 -5 3267 3169 205 313 227 23 chr4 19462955 19463083 -182865264 - L2 LINE L2 -5 3267 3114 344 257 59 20 chr4 19463358 19463459 -182864888 + L2 LINE L2 2425 2529 -785 316 305 0 0 chr4 19463499 19463581 -182864766 - MER5B DNA MER1_type -89 89 8 1491 178 36 7 chr4 19463681 19463957 -182864390 - MER67A LTR ERV1 -251 292 9 436 216 57 0 chr4 19464096 19464184 -182864163 - MER5A DNA MER1_type -83 106 14 377 376 93 26 chr4 19464199 19464814 -182863533 + L2 LINE L2 2607 3270 -2 236 259 35 0 chr4 19465398 19465456 -182862891 + L2 LINE L2 2910 2969 -303 251 270 16 0 chr4 19465523 19465586 -182862761 + CT-rich Low_complexity Low_complexity 2 65 0 257 354 0 0 chr4 19465594 19465693 -182862654 + MIR SINE MIR 163 261 -1 1244 159 48 0 chr4 19466382 19466589 -182861758 + Tigger5 DNA MER2_type 2107 2323 0 23 0 0 0 chr4 19466868 19466891 -182861456 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr4 19467263 19467292 -182861055 + AT_rich Low_complexity Low_complexity 1 29 0 2258 113 3 0 chr4 19467293 19467595 -182860752 - AluSq SINE Alu -10 303 1 275 241 90 35 chr4 19467925 19468070 -182860277 + HAL1 LINE L1 2241 2393 -114 947 115 11 22 chr4 19468227 19468277 -182860070 + (GGAA)n Simple_repeat Simple_repeat 1 229 0 947 115 11 22 chr4 19468277 19468459 -182859888 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 195 204 0 0 chr4 19469783 19469827 -182858520 + GA-rich Low_complexity Low_complexity 2 45 0 490 248 135 55 chr4 19469909 19470183 -182858164 - Charlie7 DNA MER1_type -1947 665 370 1813 146 25 0 chr4 19470812 19471129 -182857218 + AluSq SINE Alu 1 324 0 472 367 57 64 chr4 19471891 19472330 -182856017 - L2 LINE L2 0 3272 2837 1921 134 0 7 chr4 19473090 19473374 -182854973 - AluSx SINE Alu -17 295 14 187 333 83 19 chr4 19473392 19473500 -182854847 + MIR SINE MIR 119 233 -29 1616 224 25 25 chr4 19474671 19475037 -182853310 + MLT1A2 LTR MaLR 1 366 -8 193 336 9 56 chr4 19475531 19475638 -182852709 - MIR SINE MIR -59 149 48 280 231 37 37 chr4 19476039 19476147 -182852200 + L1M4 LINE L1 2476 2583 -3563 437 275 146 61 chr4 19476212 19476444 -182851903 + L1M4 LINE L1 2672 2950 -3196 2173 108 0 19 chr4 19476444 19476751 -182851596 - AluSx SINE Alu -11 301 1 437 275 146 61 chr4 19476751 19476896 -182851451 + L1M4 LINE L1 2950 3081 -3065 575 323 46 13 chr4 19477849 19478147 -182850200 + L2 LINE L2 2751 3057 -256 2297 70 3 3 chr4 19478196 19478482 -182849865 + AluY SINE Alu 1 286 -25 1727 215 71 24 chr4 19478693 19479074 -182849273 - MER74A LTR ERVL -39 519 121 1784 170 6 25 chr4 19479241 19479558 -182848789 - AluSx SINE Alu -1 311 1 400 245 64 75 chr4 19479558 19479746 -182848601 + L2 LINE L2 3123 3308 -5 332 274 69 0 chr4 19482193 19482295 -182846052 - MIR SINE MIR -32 230 122 245 239 55 46 chr4 19482836 19482945 -182845402 - MIR SINE MIR -136 126 17 5085 156 37 32 chr4 19483268 19484837 -182843510 - pTR5 LTR ERV1 0 2438 731 232 222 0 0 chr4 19485849 19485894 -182842453 - L2 LINE L2 -15 3298 3254 357 317 27 60 chr4 19488076 19488259 -182840088 - MIR SINE MIR -56 206 30 319 360 57 35 chr4 19489003 19489317 -182839030 - MARNA DNA Mariner -144 442 122 2197 102 0 7 chr4 19489352 19489645 -182838702 + AluSx SINE Alu 1 291 -21 21 0 0 0 chr4 19489658 19489679 -182838668 + AT_rich Low_complexity Low_complexity 1 21 0 351 0 0 0 chr4 19489693 19489732 -182838615 + (TCTA)n Simple_repeat Simple_repeat 4 42 0 555 273 0 0 chr4 19489911 19490039 -182838308 + MIR SINE MIR 50 177 -85 350 257 66 40 chr4 19490060 19490212 -182838135 - L2 LINE L2 0 3313 3158 1137 266 41 25 chr4 19490257 19490577 -182837770 - LTR40a LTR ERVL -194 325 1 490 239 22 30 chr4 19490579 19490713 -182837634 + MER5A DNA MER1_type 57 189 0 236 98 0 24 chr4 19491958 19491999 -182836348 + (GA)n Simple_repeat Simple_repeat 1 40 0 595 283 35 33 chr4 19492855 19493167 -182835180 - MLT1H LTR MaLR -195 354 8 286 321 152 24 chr4 19494013 19494246 -182834101 - MIR SINE MIR -6 256 3 508 260 43 58 chr4 19494886 19495094 -182833253 + MIR SINE MIR 2 206 -56 248 267 33 0 chr4 19495134 19495194 -182833153 - MER91 DNA MER1_type -1 139 78 306 292 124 7 chr4 19496248 19496385 -182831962 - MIR SINE MIR -26 236 84 774 228 7 0 chr4 19496552 19496701 -182831646 - MER58A DNA MER1_type -32 192 43 189 425 8 24 chr4 19497624 19497751 -182830596 - L2 LINE L2 -679 2635 2511 230 250 29 15 chr4 19498030 19498098 -182830249 + MLT1H LTR MaLR 21 89 -460 1657 146 101 51 chr4 19498167 19498523 -182829824 + THE1C LTR MaLR 2 375 0 372 247 65 111 chr4 19498523 19498847 -182829500 + MLT1H LTR MaLR 209 517 -32 184 273 36 0 chr4 19499222 19499277 -182829070 + L2 LINE L2 3221 3277 -36 183 129 0 0 chr4 19499978 19500009 -182828338 + (TCCC)n Simple_repeat Simple_repeat 2 32 0 630 141 13 32 chr4 19500018 19500174 -182828173 + CT-rich Low_complexity Low_complexity 3 155 0 980 107 6 17 chr4 19500174 19500352 -182827995 + (TTTC)n Simple_repeat Simple_repeat 1 176 0 1493 155 12 8 chr4 19500384 19500629 -182827718 + L1PA16 LINE L1 5905 6150 -16 528 300 30 35 chr4 19500773 19500973 -182827374 - MIR SINE MIR -42 220 22 498 279 61 37 chr4 19501073 19501468 -182826879 - MLT1H LTR MaLR -17 578 61 2063 118 3 22 chr4 19501709 19502024 -182826323 + AluSc SINE Alu 1 309 0 192 158 0 0 chr4 19502106 19502144 -182826203 + (TTA)n Simple_repeat Simple_repeat 1 38 0 2336 97 0 0 chr4 19502929 19503228 -182825119 + AluSg SINE Alu 1 299 -11 257 263 53 18 chr4 19503322 19503436 -182824911 + MIR SINE MIR 89 206 -56 519 246 364 30 chr4 19503662 19504134 -182824213 + L2 LINE L2 1886 2515 -799 517 224 26 0 chr4 19504180 19504296 -182824051 + MLT1H LTR MaLR 43 161 -388 2144 188 10 3 chr4 19504329 19504712 -182823635 + MER89 LTR ERV1 172 557 -2 322 240 0 164 chr4 19504720 19504891 -182823456 + MLT1H LTR MaLR 165 307 -242 898 168 27 0 chr4 19505343 19505492 -182822855 - Tigger3b DNA MER2_type 0 1231 1079 4372 116 96 113 chr4 19505494 19506916 -182821431 - pTR5 LTR ERV1 0 2438 750 4451 156 181 2 chr4 19506916 19507841 -182820506 - Tigger3b DNA MER2_type -141 1090 1 189 290 87 0 chr4 19508652 19508721 -182819626 + MIR SINE MIR 78 152 -56 221 309 52 41 chr4 19508845 19508942 -182819405 - L2 LINE L2 -3 3269 3172 256 346 10 10 chr4 19508970 19509071 -182819276 - MIR SINE MIR -161 101 1 224 269 0 19 chr4 19509631 19509683 -182818664 + L2 LINE L2 3210 3260 -12 185 255 0 20 chr4 19509856 19509907 -182818440 - MIR SINE MIR -111 151 102 304 309 89 18 chr4 19510425 19510593 -182817754 - MIR SINE MIR -32 230 51 200 333 72 69 chr4 19511398 19511746 -182816601 + L2 LINE L2 2396 2744 -570 701 211 8 8 chr4 19511782 19511915 -182816432 + FLAM_C SINE Alu 1 133 0 5749 157 17 11 chr4 19511963 19513236 -182815111 + L1PA16 LINE L1 4885 6166 0 452 399 47 39 chr4 19513287 19513693 -182814654 + L2 LINE L2 2863 3271 -1 283 327 96 19 chr4 19513787 19513943 -182814404 + L2 LINE L2 2926 3093 -179 4081 73 68 9 chr4 19514021 19514597 -182813750 + L1PA7 LINE L1 5544 6153 -1 271 259 114 30 chr4 19514734 19514865 -182813482 + L2 LINE L2 3168 3309 -4 1638 114 9 0 chr4 19515391 19515610 -182812737 - AluSg/x SINE Alu -17 295 75 493 296 122 14 chr4 19515667 19515880 -182812467 + MIR SINE MIR 2 237 -25 201 241 0 56 chr4 19515852 19515906 -182812441 + L2 LINE L2 3255 3305 -8 * 39 68 0 0 chr4 19516390 19516464 -182811883 + AT_rich Low_complexity Low_complexity 1 74 0 1600 160 26 3 chr4 19516707 19517019 -182811328 + MER33 DNA MER1_type 2 320 -4 206 353 0 35 chr4 19517048 19517133 -182811214 - L2 LINE L2 -13 3259 3178 222 358 63 34 chr4 19517196 19517345 -182811002 + MIR SINE MIR 2 153 -65 777 271 33 9 chr4 19517621 19517835 -182810512 - MIR SINE MIR -41 221 3 520 330 89 44 chr4 19517940 19518301 -182810046 - L2 LINE L2 -438 2876 2500 30 0 0 0 chr4 19519026 19519056 -182809291 + AT_rich Low_complexity Low_complexity 1 30 0 2331 99 0 10 chr4 19519203 19519506 -182808841 - AluSq SINE Alu -13 300 1 347 307 101 11 chr4 19519600 19519779 -182808568 + L3 LINE CR1 670 864 -713 734 259 23 0 chr4 19520876 19521050 -182807297 - MER45A DNA AcHobo 0 178 1 1989 125 71 48 chr4 19521464 19521816 -182806531 + THE1B LTR MaLR 1 360 -4 353 259 43 58 chr4 19521824 19521963 -182806384 + MIR SINE MIR 60 196 -66 345 320 63 46 chr4 19522564 19522739 -182805608 + L2 LINE L2 2214 2391 -923 191 328 45 15 chr4 19523134 19523201 -182805146 - L2 LINE L2 -183 3089 3021 623 289 146 36 chr4 19523487 19523843 -182804504 - L2 LINE L2 0 3313 2919 303 383 35 0 chr4 19523895 19524036 -182804311 - L2 LINE L2 -589 2725 2580 201 74 0 0 chr4 19525252 19525279 -182803068 + (CA)n Simple_repeat Simple_repeat 2 28 0 * 459 0 0 0 chr4 19525278 19525329 -182803018 + (GA)n Simple_repeat Simple_repeat 2 52 0 1732 163 11 22 chr4 19525330 19525606 -182802741 - AluJo SINE Alu -37 275 3 1199 268 71 39 chr4 19526102 19526249 -182802098 - MLT1J LTR MaLR 0 511 370 2212 129 0 3 chr4 19526249 19526552 -182801795 - AluSq SINE Alu -11 302 1 1199 268 71 39 chr4 19526552 19526871 -182801476 - MLT1J LTR MaLR -141 370 30 1069 329 101 14 chr4 19527020 19527592 -182800755 - L2 LINE L2 -1092 2222 1601 600 85 0 12 chr4 19527660 19527742 -182800605 - 7SLRNA srpRNA srpRNA -10 310 230 189 132 0 0 chr4 19527901 19527939 -182800408 + (CA)n Simple_repeat Simple_repeat 1 38 0 259 212 40 119 chr4 19528130 19528281 -182800066 - L1ME2 LINE L1 -2 6162 6024 1114 259 47 8 chr4 19528284 19528666 -182799681 - L1ME2 LINE L1 -226 5938 5542 513 324 75 24 chr4 19528719 19529507 -182798840 - L1ME2 LINE L1 -1786 4360 3533 258 105 0 0 chr4 19529511 19529549 -182798798 + (TG)n Simple_repeat Simple_repeat 2 39 0 212 68 0 68 chr4 19529663 19529707 -182798640 + (TG)n Simple_repeat Simple_repeat 1 41 0 27 0 0 0 chr4 19529784 19529811 -182798536 + AT_rich Low_complexity Low_complexity 1 27 0 1070 243 39 50 chr4 19529886 19530248 -182798099 + L2 LINE L2 1327 1684 -1630 545 97 62 9 chr4 19530450 19530563 -182797784 + CT-rich Low_complexity Low_complexity 1 119 0 234 302 71 40 chr4 19530664 19530790 -182797557 + MLT1J2 LTR MaLR 284 413 -37 355 375 27 0 chr4 19530879 19530991 -182797356 - L2 LINE L2 -167 3105 2991 200 204 74 0 chr4 19530997 19531051 -182797296 + L2 LINE L2 3255 3312 -1 189 0 0 0 chr4 19532138 19532159 -182796188 + (TC)n Simple_repeat Simple_repeat 1 21 0 * 243 0 0 0 chr4 19532158 19532185 -182796162 + (CA)n Simple_repeat Simple_repeat 1 27 0 303 122 0 0 chr4 19532288 19532337 -182796010 + (TG)n Simple_repeat Simple_repeat 1 49 0 198 291 91 36 chr4 19532614 19532724 -182795623 - L2 LINE L2 -5 3308 3193 3639 82 56 0 chr4 19533305 19533819 -182794528 - L1PA8 LINE L1 -15 6157 5615 25 31 0 0 chr4 19533936 19533968 -182794379 + AT_rich Low_complexity Low_complexity 1 32 0 792 286 103 11 chr4 19533977 19534344 -182794003 - MLT1J2 LTR MaLR 0 450 50 189 353 131 13 chr4 19534493 19534646 -182793701 + MIR SINE MIR 58 228 -34 214 308 68 15 chr4 19535786 19535897 -182792450 + MIR SINE MIR 49 146 -62 193 107 0 0 chr4 19536025 19536053 -182792294 - L2 LINE L2 -17 3255 3228 305 292 11 0 chr4 19536429 19536518 -182791829 - MLT1K LTR MaLR -342 246 157 202 309 54 54 chr4 19536596 19536764 -182791583 - L2 LINE L2 -213 3059 2892 249 355 50 16 chr4 19536894 19537015 -182791332 + L2 LINE L2 3143 3267 -5 278 303 78 35 chr4 19537039 19537181 -182791166 - MIR SINE MIR 0 262 115 371 350 56 6 chr4 19537327 19537487 -182790860 - MIR SINE MIR -75 187 20 23 0 0 0 chr4 19537562 19537585 -182790762 + AT_rich Low_complexity Low_complexity 1 23 0 1242 103 49 5 chr4 19537801 19538004 -182790343 - L1PB1 LINE L1 0 6151 5940 1860 126 95 31 chr4 19538087 19538436 -182789911 + THE1C LTR MaLR 5 375 0 203 344 0 0 chr4 19538698 19538759 -182789588 - MIR SINE MIR -3 259 199 378 310 18 58 chr4 19540149 19540320 -182788027 - MIR SINE MIR -52 210 47 191 353 68 45 chr4 19540471 19540692 -182787655 + L2 LINE L2 2817 3042 -230 323 288 188 0 chr4 19540721 19540891 -182787456 + MIR SINE MIR 58 259 -3 234 0 0 0 chr4 19541007 19541033 -182787314 + (CA)n Simple_repeat Simple_repeat 2 27 0 5430 37 0 0 chr4 19541736 19542386 -182785961 - L1PA4 LINE L1 -3 6152 5503 1170 33 0 0 chr4 19542386 19542537 -182785810 + L1PA4 LINE L1 5337 5487 -668 299 345 31 5 chr4 19542682 19542873 -182785474 + HERV16 LTR ERVL 731 926 -4070 2348 103 3 0 chr4 19542927 19543239 -182785108 - AluSp SINE Alu 0 313 1 497 336 93 28 chr4 19543576 19544156 -182784191 + HERV16 LTR ERVL 2159 2776 -2988 359 356 17 11 chr4 19544265 19544442 -182783905 + HERV16 LTR ERVL 3545 3722 -1932 1757 167 6 35 chr4 19545112 19545423 -182782924 + AluSx SINE Alu 1 302 -10 33 43 0 0 chr4 19545463 19545510 -182782837 + AT_rich Low_complexity Low_complexity 1 47 0 218 373 45 8 chr4 19545581 19545715 -182782632 + MIR SINE MIR 59 197 -65 190 351 0 13 chr4 19546684 19546761 -182781586 + MIR SINE MIR 68 143 -65 2144 62 0 0 chr4 19546775 19547031 -182781316 - AluSc SINE Alu -15 294 39 201 328 15 15 chr4 19547173 19547240 -182781107 + MIR SINE MIR 37 103 -105 429 20 0 0 chr4 19548040 19548090 -182780257 + (CA)n Simple_repeat Simple_repeat 1 50 0 194 208 19 0 chr4 19548358 19548411 -182779936 + (TA)n Simple_repeat Simple_repeat 2 55 0 2177 118 0 0 chr4 19548472 19548768 -182779579 - AluSc SINE Alu -13 296 1 234 0 0 0 chr4 19548798 19548824 -182779523 + (TG)n Simple_repeat Simple_repeat 2 27 0 339 44 0 0 chr4 19549502 19549547 -182778800 + (CA)n Simple_repeat Simple_repeat 1 45 0 546 297 28 7 chr4 19549704 19549849 -182778498 - MIR SINE MIR -92 170 23 197 371 82 0 chr4 19551165 19551262 -182777085 - MIR3 SINE MIR -11 197 93 499 237 11 0 chr4 19552188 19552365 -182775982 + (TG)n Simple_repeat Simple_repeat 2 180 0 219 303 45 68 chr4 19553654 19553786 -182774561 - MIR3 SINE MIR -73 135 7 * 418 336 72 24 chr4 19553782 19553990 -182774357 - L2 LINE L2 -4 3309 3092 1867 216 76 2 chr4 19555299 19555734 -182772613 + MLT1C LTR MaLR 1 467 0 2237 119 0 0 chr4 19557419 19557714 -182770633 + AluSx SINE Alu 1 295 -17 262 281 16 0 chr4 19557722 19557786 -182770561 + MIR SINE MIR 53 117 -145 579 354 196 20 chr4 19558240 19558796 -182769551 + L2 LINE L2 2063 2716 -598 1051 280 22 73 chr4 19558938 19559431 -182768916 - LTR33 LTR ERVL 0 521 54 3306 143 30 0 chr4 19559738 19560276 -182768071 - MER41C LTR ERV1 0 554 1 264 259 12 49 chr4 19560351 19560432 -182767915 + L2 LINE L2 3236 3313 0 198 329 29 0 chr4 19561531 19561601 -182766746 - MIR SINE MIR -3 259 188 333 294 155 45 chr4 19561608 19562091 -182766256 - MLT1H LTR MaLR -13 536 1 252 258 0 0 chr4 19562093 19562155 -182766192 - MIR SINE MIR -52 210 149 457 172 35 0 chr4 19562161 19562248 -182766099 + MLT1A1 LTR MaLR 6 95 -333 648 233 79 26 chr4 19562293 19562482 -182765865 + MLT1A1 LTR MaLR 167 365 0 1174 112 62 0 chr4 19562507 19562731 -182765616 + L1MA3 LINE L1 2488 2725 -4840 5535 163 28 17 chr4 19562733 19562923 -182765424 + L1MA3 LINE L1 5811 5997 -1727 1534 126 31 0 chr4 19562923 19563146 -182765201 - MER30 DNA MER1_type 0 230 1 5535 163 28 17 chr4 19563146 19564847 -182763500 + L1MA3 LINE L1 5997 7724 0 6209 200 31 42 chr4 19564868 19566588 -182761759 + L1M4c LINE L1 922 2622 -3760 944 260 34 44 chr4 19566647 19567058 -182761289 + L1MC4 LINE L1 7636 8042 0 570 124 0 0 chr4 19567294 19567383 -182760964 + (TATTG)n Simple_repeat Simple_repeat 2 90 0 234 311 0 0 chr4 19567411 19567472 -182760875 + MER112 DNA MER1_type 191 251 -9 544 307 26 16 chr4 19567993 19568182 -182760165 - MIR SINE MIR -25 237 47 691 205 30 18 chr4 19568236 19568402 -182759945 + MLT1C LTR MaLR 300 467 0 245 277 84 24 chr4 19569089 19569172 -182759175 - Charlie8 DNA MER1_type -2305 112 25 997 171 80 59 chr4 19569796 19570082 -182758265 + MER33 DNA MER1_type 27 318 -6 185 287 89 69 chr4 19571494 19571595 -182756752 + MIR SINE MIR 9 111 -151 744 254 100 0 chr4 19571879 19572099 -182756248 + MIR SINE MIR 8 249 -13 21 0 0 0 chr4 19572873 19572894 -182755453 + AT_rich Low_complexity Low_complexity 1 21 0 262 283 33 0 chr4 19574955 19575047 -182753300 + (TA)n Simple_repeat Simple_repeat 2 96 0 626 111 0 0 chr4 19575321 19575402 -182752945 - AluY SINE Alu -216 95 15 2539 61 0 0 chr4 19575782 19576092 -182752255 + AluY SINE Alu 2 311 0 249 242 16 0 chr4 19576681 19576743 -182751604 + (CATA)n Simple_repeat Simple_repeat 2 64 0 1517 135 25 41 chr4 19576844 19577225 -182751122 + L1M2 LINE L1 5180 5546 -743 464 318 41 82 chr4 19577320 19577685 -182750662 + L2 LINE L2 2923 3272 0 234 0 0 0 chr4 19578030 19578056 -182750291 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2116 107 40 7 chr4 19578348 19578648 -182749699 + AluSg SINE Alu 1 310 0 183 244 233 0 chr4 19579215 19579301 -182749046 + L2 LINE L2 3192 3297 -16 1509 199 44 39 chr4 19580038 19580377 -182747970 + MLT1B LTR MaLR 27 370 -20 1862 175 55 40 chr4 19580377 19580799 -182747548 + MSTC LTR MaLR 1 428 0 1509 199 44 39 chr4 19580799 19580821 -182747526 + MLT1B LTR MaLR 370 390 0 21 36 0 0 chr4 19581948 19581976 -182746371 + AT_rich Low_complexity Low_complexity 1 28 0 209 328 0 0 chr4 19582278 19582345 -182746002 + GA-rich Low_complexity Low_complexity 2 68 0 6241 182 16 27 chr4 19582968 19584334 -182744013 - L1P3 LINE L1 -4056 2405 1012 625 267 24 6 chr4 19584327 19584492 -182743855 + L1P3 LINE L1 564 731 -5730 * 201 355 0 40 chr4 19684885 19684961 -182643386 - MIR SINE MIR -170 92 20 4576 179 11 6 chr4 19685004 19686304 -182642043 - L1PA16 LINE L1 -152 6014 4710 6494 204 11 12 chr4 19686304 19687744 -182640603 + L1PA16 LINE L1 3266 4703 -1443 239 315 0 33 chr4 19688098 19688190 -182640157 - MLT1K LTR MaLR -56 532 444 414 299 40 40 chr4 19688259 19688433 -182639914 - MLT1K LTR MaLR -158 430 257 625 265 20 60 chr4 19688442 19688642 -182639705 + MER82 DNA MER2_type 1 192 -461 193 151 12 47 chr4 19688673 19688759 -182639588 + (TA)n Simple_repeat Simple_repeat 2 84 0 1830 204 46 59 chr4 19688776 19689237 -182639110 + MER82 DNA MER2_type 199 653 0 278 340 19 39 chr4 19689248 19689404 -182638943 - MLT1K LTR MaLR -409 179 27 2022 105 26 36 chr4 19690660 19690964 -182637383 - AluY SINE Alu -10 301 1 224 349 47 9 chr4 19691042 19691148 -182637199 + L2 LINE L2 1903 2012 -1302 244 316 20 31 chr4 19691185 19691283 -182637064 - L2 LINE L2 -18 3295 3199 310 303 73 9 chr4 19691773 19691882 -182636465 + L2 LINE L2 3156 3271 -1 213 309 0 0 chr4 19691966 19692021 -182636326 - MER5A DNA MER1_type 0 189 135 216 0 0 0 chr4 19692241 19692265 -182636082 + (TC)n Simple_repeat Simple_repeat 1 24 0 1976 80 4 36 chr4 19693063 19693338 -182635009 + AluSp SINE Alu 1 266 -47 30 27 0 0 chr4 19693682 19693719 -182634628 + AT_rich Low_complexity Low_complexity 1 37 0 1419 252 75 23 chr4 19695352 19695793 -182632554 - MLT1D LTR MaLR -4 501 38 420 143 0 14 chr4 19695811 19695881 -182632466 - MLT1D LTR MaLR -423 82 14 271 298 0 0 chr4 19696924 19697008 -182631339 + (TTCA)n Simple_repeat Simple_repeat 1 84 0 484 307 166 0 chr4 19698500 19698705 -182629642 - MIR SINE MIR -12 250 12 1879 255 10 2 chr4 19699276 19699770 -182628577 - L1M4 LINE L1 -1082 5064 4567 1955 140 10 0 chr4 19700081 19700374 -182627973 - AluSx SINE Alu -16 296 1 270 0 0 0 chr4 19700396 19700426 -182627921 + (TTA)n Simple_repeat Simple_repeat 2 31 0 198 365 27 0 chr4 19700627 19700701 -182627646 + L2 LINE L2 3227 3302 -11 213 65 0 0 chr4 19702033 19702064 -182626283 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 374 300 81 19 chr4 19702600 19702760 -182625587 + MIR SINE MIR 59 228 -34 2210 139 28 0 chr4 19703179 19703532 -182624815 - THE1B LTR MaLR -1 363 1 294 362 34 34 chr4 19704457 19704664 -182623683 + MIR3 SINE MIR 1 207 -1 627 286 132 0 chr4 19704930 19705143 -182623204 - MIR SINE MIR -13 249 9 28 29 0 0 chr4 19705186 19705221 -182623126 + AT_rich Low_complexity Low_complexity 1 35 0 367 287 30 10 chr4 19705231 19705332 -182623015 + MIR SINE MIR 49 151 -111 197 197 49 115 chr4 19705398 19705520 -182622827 - L2 LINE L2 -64 3249 3136 237 309 173 31 chr4 19705565 19705756 -182622591 - MLT1G LTR MaLR -94 496 279 276 322 95 19 chr4 19705826 19706101 -182622246 - L2 LINE L2 -252 3061 2714 876 124 0 0 chr4 19706561 19706698 -182621649 + (TTTC)n Simple_repeat Simple_repeat 1 137 0 569 113 0 10 chr4 19706698 19706795 -182621552 + (TTCC)n Simple_repeat Simple_repeat 3 98 0 417 333 116 44 chr4 19708044 19708708 -182619639 - L2 LINE L2 -864 2450 1739 381 93 0 0 chr4 19709682 19709736 -182618611 + (GA)n Simple_repeat Simple_repeat 1 54 0 2288 125 23 3 chr4 19709901 19710245 -182618102 + THE1B LTR MaLR 14 364 0 3342 72 26 78 chr4 19710245 19710784 -182617563 + THE1B-int LTR MaLR 1 511 -1069 2173 162 44 32 chr4 19710817 19711363 -182616984 + MLT2A2 LTR ERVL 1 554 0 22 56 0 0 chr4 19712131 19712167 -182616180 + AT_rich Low_complexity Low_complexity 1 36 0 1410 291 74 13 chr4 19712721 19713181 -182615166 + Zaphod DNA AcHobo 21 508 -3523 45 55 0 0 chr4 19713320 19713393 -182614954 + AT_rich Low_complexity Low_complexity 1 73 0 1730 143 137 16 chr4 19713617 19713938 -182614409 - THE1B LTR MaLR -4 360 1 418 192 75 25 chr4 19713959 19714079 -182614268 + Zaphod DNA AcHobo 3737 3862 -169 7472 188 20 36 chr4 19714100 19715940 -182612407 + L1PB4 LINE L1 3462 5253 -903 216 0 0 0 chr4 19715940 19715964 -182612383 + (CAA)n Simple_repeat Simple_repeat 1 24 0 7472 188 20 36 chr4 19715964 19716852 -182611495 + L1PB4 LINE L1 5253 6154 -2 294 170 10 140 chr4 19716867 19716895 -182611452 + MER115 DNA AcHobo 607 637 -56 2849 0 0 3 chr4 19716895 19717204 -182611143 - AluYa5 SINE Alu -3 308 1 294 170 10 140 chr4 19717204 19717275 -182611072 + MER115 DNA AcHobo 637 693 0 347 357 42 65 chr4 19717333 19717686 -182610661 - L2 LINE L2 -40 3232 2888 873 127 0 33 chr4 19717816 19717969 -182610378 + AluJb SINE Alu 1 138 -174 14192 33 0 0 chr4 19717969 19719679 -182608668 + L1P LINE L1 3649 5358 -788 1590 220 65 44 chr4 19720519 19721014 -182607333 - MLT1D LTR MaLR 0 505 1 540 187 53 64 chr4 19721032 19721219 -182607128 - MER53 DNA DNA -1 188 4 2342 80 3 19 chr4 19721500 19721812 -182606535 - AluSg SINE Alu 0 310 4 842 126 0 0 chr4 19721814 19721949 -182606398 - L1 LINE L1 -1493 4653 4519 180 176 0 0 chr4 19722788 19722822 -182605525 + A-rich Low_complexity Low_complexity 1 34 0 183 80 0 0 chr4 19723542 19723567 -182604780 + (CA)n Simple_repeat Simple_repeat 2 26 0 228 200 20 0 chr4 19723574 19723624 -182604723 + (TA)n Simple_repeat Simple_repeat 2 52 0 1958 247 84 38 chr4 19723630 19724959 -182603388 - L1ME2 LINE L1 -10 6414 5028 1570 259 36 54 chr4 19724980 19725347 -182603000 - L1ME2 LINE L1 -4987 1422 1073 1162 258 24 40 chr4 19725347 19725727 -182602620 - MLT1A2 LTR MaLR 0 374 1 1570 259 36 54 chr4 19725727 19726080 -182602267 - L1ME2 LINE L1 -5336 1073 715 308 258 70 16 chr4 19726514 19726809 -182601538 - L1ME LINE L1 -4973 1399 1031 2427 73 0 19 chr4 19727200 19727517 -182600830 - AluY SINE Alu 0 311 1 215 360 100 34 chr4 19729025 19729264 -182599083 - L3b LINE CR1 -221 1362 1108 285 340 57 21 chr4 19730029 19730203 -182598144 + MIR SINE MIR 9 181 -63 22 0 0 0 chr4 19730890 19730912 -182597435 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4 19730927 19730948 -182597399 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr4 19731100 19731123 -182597224 + AT_rich Low_complexity Low_complexity 1 23 0 242 304 171 32 chr4 19731452 19731610 -182596737 - MIR3 SINE MIR -13 195 16 253 337 63 34 chr4 19731618 19731793 -182596554 - MIR3 SINE MIR -10 198 19 2544 58 0 6 chr4 19732515 19732828 -182595519 - AluY SINE Alu 0 311 1 668 334 33 66 chr4 19733425 19733967 -182594380 + L2 LINE L2 2779 3312 -1 229 246 0 0 chr4 19733968 19733990 -182594357 + (TGAA)n Simple_repeat Simple_repeat 2 23 -35 2016 125 0 14 chr4 19733990 19734285 -182594062 + AluSx SINE Alu 1 291 -21 229 246 0 0 chr4 19734285 19734319 -182594028 + (TGAA)n Simple_repeat Simple_repeat 22 58 0 461 184 26 9 chr4 19735558 19735672 -182592675 + L1MA4 LINE L1 6185 6300 0 1768 166 10 0 chr4 19735753 19736055 -182592292 - AluSp SINE Alu -8 305 1 10506 148 41 64 chr4 19736202 19738407 -182589940 - L1P LINE L1 -3825 2321 167 195 370 43 14 chr4 19738852 19738990 -182589357 + L2 LINE L2 2910 3051 -221 450 320 171 0 chr4 19740237 19740418 -182587929 + L3 LINE CR1 609 820 -757 261 370 46 0 chr4 19740473 19740581 -182587766 + L3 LINE CR1 1011 1123 -454 3347 115 8 14 chr4 19741023 19741537 -182586810 - MER9 LTR ERVK 0 511 1 1463 238 106 64 chr4 19742055 19742897 -182585450 - L1MC5 LINE L1 -435 7526 6650 241 285 106 55 chr4 19743359 19743794 -182584553 - HAL1b LINE L1 -826 522 66 21 0 0 0 chr4 19744155 19744176 -182584171 + AT_rich Low_complexity Low_complexity 1 21 0 236 221 0 47 chr4 19744590 19744676 -182583671 + T-rich Low_complexity Low_complexity 2 83 0 793 274 56 94 chr4 19745670 19746173 -182582174 - MER102b DNA MER1_type -43 298 29 498 227 46 8 chr4 19746444 19746589 -182581758 + MLT1C LTR MaLR 1 150 -355 786 246 94 39 chr4 19747094 19747403 -182580944 + MLT1C LTR MaLR 138 463 -4 265 374 174 0 chr4 19747951 19748066 -182580281 + L2 LINE L2 3134 3268 -4 2084 68 5 2 chr4 19748879 19749443 -182578904 + L1PA7 LINE L1 5479 6147 -7 2241 105 3 0 chr4 19749630 19749926 -182578421 + AluY SINE Alu 1 297 -14 219 256 98 24 chr4 19750658 19750740 -182577607 + MIR SINE MIR 21 108 -154 181 69 0 35 chr4 19750811 19750840 -182577507 + L3 LINE CR1 1234 1261 -316 772 165 6 98 chr4 19751118 19751282 -182577065 + MER5A DNA MER1_type 1 149 -40 227 274 0 0 chr4 19751491 19751542 -182576805 - L2 LINE L2 -5 3267 3217 21 0 0 0 chr4 19751603 19751624 -182576723 + AT_rich Low_complexity Low_complexity 1 21 0 1741 225 35 72 chr4 19752811 19753326 -182575021 + MLT2B1 LTR ERVL 17 512 -8 313 240 27 0 chr4 19753330 19753405 -182574942 - MIR SINE MIR -89 173 97 885 220 53 104 chr4 19753410 19753728 -182574619 + MLT1F1 LTR MaLR 3 304 -263 664 208 40 20 chr4 19753699 19753889 -182574458 + MLT1F1 LTR MaLR 432 567 0 * 24 0 0 0 chr4 19754106 19754130 -182574217 + AT_rich Low_complexity Low_complexity 1 24 0 385 92 0 2 chr4 19754139 19754199 -182574148 - Alu SINE Alu -256 52 1 3181 151 0 26 chr4 19754199 19754668 -182573679 - L1PA15 LINE L1 -125 6040 5584 1935 135 0 11 chr4 19754668 19754986 -182573361 + AluSc SINE Alu 1 315 0 3181 151 0 26 chr4 19754986 19755051 -182573296 - L1PA15 LINE L1 -581 5584 5519 1095 197 9 0 chr4 19755049 19755272 -182573075 + L1P LINE L1 4842 5066 -1080 * 292 236 29 132 chr4 19755575 19755749 -182572598 + L2 LINE L2 2891 3046 -226 287 308 172 40 chr4 19755800 19756027 -182572320 + MIR SINE MIR 6 262 0 21 57 0 0 chr4 19756285 19756320 -182572027 + AT_rich Low_complexity Low_complexity 1 35 0 7257 93 4 3 chr4 19756320 19758146 -182570201 - L1PA7 LINE L1 -3 6151 4329 1791 92 8 0 chr4 19758149 19758411 -182569936 - L1PA7 LINE L1 -3573 2573 2310 388 282 0 27 chr4 19758728 19758838 -182569509 + MIR SINE MIR 9 115 -147 1002 212 5 14 chr4 19759645 19759862 -182568485 + MER20 DNA MER1_type 3 217 -2 5522 115 11 23 chr4 19759922 19761007 -182567340 + L1PA13 LINE L1 4555 5631 -532 1642 151 97 31 chr4 19761007 19761359 -182566988 - THE1C LTR MaLR 0 375 1 5522 115 11 23 chr4 19761359 19761886 -182566461 + L1PA13 LINE L1 5631 6163 0 459 266 22 0 chr4 19762067 19762206 -182566141 + L1MA8 LINE L1 6140 6281 -10 24 0 0 0 chr4 19762206 19762230 -182566117 + AT_rich Low_complexity Low_complexity 1 24 0 1385 222 30 6 chr4 19763272 19763606 -182564741 - L1MB3 LINE L1 -255 5928 5587 1040 158 24 57 chr4 19763629 19763875 -182564472 - L1MA4A LINE L1 -13 6290 6053 3782 150 36 15 chr4 19763905 19764351 -182563996 - L1MA4A LINE L1 -215 6088 5620 2047 139 48 17 chr4 19764351 19764704 -182563643 - THE1B LTR MaLR 0 364 1 3782 150 36 15 chr4 19764704 19764970 -182563377 - L1MA4A LINE L1 -683 5620 5361 5885 203 35 19 chr4 19765001 19767345 -182561002 - L1PB4 LINE L1 -1 6155 3776 1251 245 69 48 chr4 19767783 19768264 -182560083 + MLT1D LTR MaLR 7 497 -8 484 304 20 14 chr4 19768272 19768420 -182559927 + MIR SINE MIR 107 255 -7 1152 226 30 27 chr4 19768807 19769104 -182559243 + MLT1A1 LTR MaLR 61 358 -7 1927 34 0 0 chr4 19769164 19769397 -182558950 - L1PA3 LINE L1 0 6155 5923 2886 18 0 0 chr4 19769397 19769727 -182558620 + L1PA3 LINE L1 5567 5896 -259 193 250 183 10 chr4 19769727 19769831 -182558516 + MIR SINE MIR 125 246 -16 439 177 0 0 chr4 19769979 19770058 -182558289 + L1PB4 LINE L1 5897 5975 -181 1639 183 174 11 chr4 19770066 19770427 -182557920 + MSTA LTR MaLR 9 428 0 565 228 28 56 chr4 19770432 19770612 -182557735 + L1PB4 LINE L1 5980 6154 -2 213 339 83 28 chr4 19772515 19772695 -182555652 + MIR SINE MIR 73 262 0 216 86 0 0 chr4 19773515 19773550 -182554797 + (A)n Simple_repeat Simple_repeat 1 35 0 1884 66 0 0 chr4 19773895 19774122 -182554225 - AluY SINE Alu -84 227 1 623 184 16 0 chr4 19774122 19774247 -182554100 + L1M4 LINE L1 5161 5287 -859 23 33 0 0 chr4 19774266 19774296 -182554051 + AT_rich Low_complexity Low_complexity 1 30 0 694 229 23 0 chr4 19774309 19774440 -182553907 + MER2 DNA MER2_type 1 134 -211 1993 109 25 0 chr4 19774453 19774729 -182553618 - AluSx SINE Alu -26 286 4 3122 241 40 49 chr4 19774732 19776402 -182551945 - L1M4 LINE L1 -2358 4490 2878 28 48 0 0 chr4 19776402 19776444 -182551903 + AT_rich Low_complexity Low_complexity 1 42 0 12816 209 66 11 chr4 19776449 19779179 -182549168 - L1M4 LINE L1 -3971 2878 1 22 35 0 0 chr4 19779659 19779688 -182548659 + AT_rich Low_complexity Low_complexity 1 29 0 1938 141 7 23 chr4 19780302 19780608 -182547739 - AluSq SINE Alu -12 301 1 396 0 0 0 chr4 19781502 19781546 -182546801 + (TA)n Simple_repeat Simple_repeat 1 44 0 9042 32 11 0 chr4 19781550 19783404 -182544943 - L1PA4 LINE L1 -5 6150 4284 2047 205 35 6 chr4 19783404 19783885 -182544462 - L1MC2 LINE L1 -16 6328 5823 26 64 0 0 chr4 19784100 19784147 -182544200 + AT_rich Low_complexity Low_complexity 1 47 0 2106 118 0 10 chr4 19784459 19784763 -182543584 + AluSx SINE Alu 5 305 -7 1583 217 31 14 chr4 19785770 19786129 -182542218 + MLT1A1 LTR MaLR 1 365 0 889 207 107 48 chr4 19786620 19786910 -182541437 + MLT1B LTR MaLR 3 309 -81 186 43 0 0 chr4 19787098 19787121 -182541226 + (TA)n Simple_repeat Simple_repeat 1 23 0 322 328 144 10 chr4 19787664 19787865 -182540482 + MIR SINE MIR 35 262 0 256 358 113 54 chr4 19788066 19788306 -182540041 - L2 LINE L2 -21 3251 2998 234 298 206 21 chr4 19788305 19788446 -182539901 - MIR3 SINE MIR -18 190 24 * 351 78 0 0 chr4 19789098 19789149 -182539198 + (TG)n Simple_repeat Simple_repeat 1 51 0 371 133 60 0 chr4 19790150 19790233 -182538114 - L1MA7 LINE L1 -3 6288 6201 494 89 0 0 chr4 19790271 19790350 -182537997 - Alu SINE Alu 0 310 232 715 213 0 6 chr4 19890351 19890515 -182437832 - L1 LINE L1 -1607 5958 5796 * 1430 270 29 20 chr4 19890508 19891060 -182437287 - L1 LINE L1 -4242 3324 2558 6418 167 20 14 chr4 19891062 19892158 -182436189 + L1P3 LINE L1 8 1110 -5351 947 157 87 0 chr4 19892159 19892331 -182436016 + MSTA LTR MaLR 234 420 -8 1311 184 32 8 chr4 19892334 19892584 -182435763 + L1PA15 LINE L1 5906 6161 -4 9901 226 58 15 chr4 19892586 19894614 -182433733 + L1 LINE L1 2182 4377 -1769 1586 224 0 0 chr4 19894614 19894917 -182433430 + AluJo SINE Alu 1 303 -9 9901 226 58 15 chr4 19894917 19895805 -182432542 + L1 LINE L1 4377 5225 -921 1911 160 21 24 chr4 19895810 19896186 -182432161 + THE1C LTR MaLR 1 375 0 7578 122 13 36 chr4 19896186 19897373 -182430974 + THE1C-int LTR MaLR 1 1159 -421 264 204 0 0 chr4 19897368 19897417 -182430930 + L1MA9 LINE L1 6108 6156 -156 * 662 179 32 6 chr4 19897439 19897595 -182430752 + L1MA9 LINE L1 6146 6305 -7 2029 247 80 33 chr4 19900046 19900138 -182428209 + L1ME1 LINE L1 4790 4876 -1290 2183 143 57 40 chr4 19900138 19900559 -182427788 + MSTA LTR MaLR 1 428 0 2029 247 80 33 chr4 19900559 19901774 -182426573 + L1ME1 LINE L1 4876 6166 0 210 71 0 0 chr4 19901909 19901937 -182426410 + (TC)n Simple_repeat Simple_repeat 1 28 0 185 128 21 0 chr4 19901950 19901997 -182426350 + (TG)n Simple_repeat Simple_repeat 2 49 0 4150 310 105 16 chr4 19902826 19904592 -182423755 - L2 LINE L2 -338 2976 1054 182 213 123 107 chr4 19904859 19904981 -182423366 - MIR3 SINE MIR -72 136 13 494 304 42 37 chr4 19905889 19906080 -182422267 + MIR SINE MIR 6 197 -65 * 497 306 118 51 chr4 19906078 19906646 -182421701 - L2 LINE L2 -4 3309 2686 273 342 69 45 chr4 19906691 19906893 -182421454 + L2 LINE L2 3107 3313 0 268 234 55 94 chr4 19906961 19907162 -182421185 - L2 LINE L2 -878 2436 2244 808 267 61 18 chr4 19907185 19907553 -182420794 - MLT1E LTR MaLR -118 475 1 6345 268 78 28 chr4 19907583 19912054 -182416293 + L1ME3 LINE L1 1853 6549 -7 331 311 69 69 chr4 19912100 19912171 -182416176 + L1MC4a LINE L1 5508 5578 -2230 2326 97 0 0 chr4 19912171 19912479 -182415868 - AluSq SINE Alu -5 308 1 331 311 69 69 chr4 19912479 19912815 -182415532 + L1MC4a LINE L1 5577 5915 -1893 35 24 0 0 chr4 19912918 19912960 -182415387 + AT_rich Low_complexity Low_complexity 1 42 0 258 262 0 0 chr4 19913175 19913236 -182415111 + (TATATG)n Simple_repeat Simple_repeat 1 61 0 22 0 0 0 chr4 19913428 19913450 -182414897 + AT_rich Low_complexity Low_complexity 1 22 0 1228 238 94 25 chr4 19913614 19914060 -182414287 + Charlie4a DNA MER1_type 32 508 0 319 347 81 33 chr4 19915122 19915393 -182412954 + Tigger8 DNA MER2_type 8 291 -375 467 205 16 63 chr4 19915746 19915873 -182412474 + MIR3 SINE MIR 61 181 -27 207 0 0 0 chr4 19917811 19917834 -182410513 + (CA)n Simple_repeat Simple_repeat 1 23 0 229 315 46 9 chr4 19918786 19918894 -182409453 + MER5A DNA MER1_type 2 113 -76 189 237 0 0 chr4 19919035 19919073 -182409274 - L2 LINE L2 -7 3306 3269 970 47 0 31 chr4 19920124 19920253 -182408094 - L1PA8 LINE L1 -3 6169 6045 1924 128 6 64 chr4 19920253 19920611 -182407736 + L1P LINE L1 2010 2346 -3800 510 327 100 5 chr4 19920982 19921202 -182407145 + L2 LINE L2 2992 3232 -40 343 323 87 16 chr4 19921237 19921364 -182406983 + L2 LINE L2 3137 3272 0 818 134 65 126 chr4 19921385 19921616 -182406731 - MER20 DNA MER1_type 0 219 3 26 0 0 0 chr4 19921702 19921728 -182406619 + AT_rich Low_complexity Low_complexity 1 26 0 186 43 0 0 chr4 19922006 19922029 -182406318 + (CA)n Simple_repeat Simple_repeat 2 24 0 309 280 59 42 chr4 19923089 19923207 -182405140 + MIR3 SINE MIR 69 188 -20 187 342 92 0 chr4 19923482 19923558 -182404789 + MIR SINE MIR 66 148 -114 550 45 0 91 chr4 19923891 19923979 -182404368 + MADE1 DNA Mariner 1 80 0 1480 208 63 22 chr4 19923995 19924360 -182403987 - MLT1B LTR MaLR -10 380 1 216 250 34 68 chr4 19924617 19924705 -182403642 + MIR SINE MIR 81 165 -97 1912 177 43 30 chr4 19924880 19925423 -182402924 + MLT2A2 LTR ERVL 1 554 0 193 357 56 7 chr4 19925724 19925867 -182402480 + L2 LINE L2 3159 3308 -5 312 381 26 5 chr4 19926184 19926373 -182401974 + L2 LINE L2 2868 3060 -212 462 164 0 0 chr4 19926414 19926487 -182401860 - AluJ/FRAM SINE Alu -21 291 219 317 349 62 8 chr4 19926564 19926693 -182401654 + L2 LINE L2 3134 3269 -3 22 0 0 0 chr4 19926922 19926944 -182401403 + AT_rich Low_complexity Low_complexity 1 22 0 294 210 48 0 chr4 19927715 19927777 -182400570 - MIR SINE MIR -70 192 128 251 319 198 19 chr4 19929925 19930132 -182398215 - MIR SINE MIR 0 262 19 2334 96 0 3 chr4 19930730 19931042 -182397305 - AluY SINE Alu 0 311 1 5063 132 28 7 chr4 19931045 19931896 -182396451 - L1PA16 LINE L1 0 6166 5298 549 261 6 0 chr4 19931991 19932148 -182396199 - L1M4 LINE L1 -2136 4010 3853 461 302 132 101 chr4 19932156 19932649 -182395698 + L2 LINE L2 2804 3311 -2 297 0 0 0 chr4 19932885 19932918 -182395429 + (CA)n Simple_repeat Simple_repeat 2 34 0 * 369 0 0 0 chr4 19932917 19932958 -182395389 + (GA)n Simple_repeat Simple_repeat 2 42 0 24 91 0 0 chr4 19933728 19933794 -182394553 + AT_rich Low_complexity Low_complexity 1 66 0 210 349 60 49 chr4 19933799 19933986 -182394361 - MIR SINE MIR -65 143 10 208 280 40 27 chr4 19934717 19934792 -182393555 + MIR SINE MIR 71 146 -62 1781 95 0 0 chr4 19934911 19935142 -182393205 - AluSg/x SINE Alu -5 305 75 189 325 125 25 chr4 19936706 19936866 -182391481 - L2 LINE L2 -703 2611 2436 558 239 0 0 chr4 19937386 19937547 -182390800 - FLAM_A SINE Alu 0 165 5 1022 175 0 0 chr4 19938924 19939084 -182389263 - FRAM SINE Alu -16 160 1 312 374 65 16 chr4 19939152 19939398 -182388949 - L2 LINE L2 -588 2726 2469 525 349 105 19 chr4 19939409 19939733 -182388614 - MLT1J2 LTR MaLR 0 450 99 503 206 10 0 chr4 19939744 19939841 -182388506 - Tigger7 DNA MER2_type -1 2490 2393 * 1126 283 35 0 chr4 19939839 19940097 -182388250 - Tigger7 DNA MER2_type -2220 267 1 796 199 0 0 chr4 19940592 19940738 -182387609 + MER3 DNA MER1_type 24 122 -87 416 322 0 33 chr4 19940807 19940959 -182387388 - MIR SINE MIR 0 262 116 585 278 90 67 chr4 19942194 19942582 -182385765 - MLT1J2 LTR MaLR -49 401 5 1972 147 39 30 chr4 19942863 19943224 -182385123 - THE1B LTR MaLR 0 364 1 1086 219 64 122 chr4 19943575 19943643 -182384704 - MLT1D LTR MaLR -2 503 433 2118 129 0 3 chr4 19943643 19943952 -182384395 + AluSx SINE Alu 1 308 -4 1086 219 64 122 chr4 19943952 19944417 -182383930 - MLT1D LTR MaLR -72 433 1 531 176 182 61 chr4 19945637 19945785 -182382562 - MER5A DNA MER1_type -3 186 21 199 143 0 0 chr4 19945899 19945934 -182382413 - L2 LINE L2 0 3313 3279 188 269 179 0 chr4 19946101 19946168 -182382179 - L2 LINE L2 -8 3305 3227 24 32 0 0 chr4 19946530 19946561 -182381786 + AT_rich Low_complexity Low_complexity 1 31 0 225 203 0 34 chr4 19946573 19946632 -182381715 - L1MB4 LINE L1 -38 6142 6086 * 2910 190 8 0 chr4 19946631 19947158 -182381189 - L1MA4 LINE L1 -282 6018 5488 1361 145 79 11 chr4 19947162 19947521 -182380826 + L1MA4 LINE L1 5101 5483 -743 257 279 0 0 chr4 19947620 19947688 -182380659 + (TG)n Simple_repeat Simple_repeat 1 68 0 1314 212 36 51 chr4 19948596 19948988 -182379359 + MLT1B LTR MaLR 1 386 -4 7804 18 0 0 chr4 19949217 19950160 -182378187 + L1PA3 LINE L1 5213 6155 0 211 242 16 32 chr4 19950984 19951046 -182377301 + L2 LINE L2 3250 3310 -3 255 331 101 14 chr4 19951073 19951212 -182377135 + MIR SINE MIR 57 207 -55 2007 169 14 19 chr4 19951416 19951436 -182376911 + MLT1A1 LTR MaLR 1 20 -345 969 219 135 42 chr4 19951436 19951770 -182376577 + MLT1A1 LTR MaLR 1 365 0 2007 169 14 19 chr4 19951770 19952116 -182376231 + MLT1A1 LTR MaLR 20 365 0 225 262 214 48 chr4 19952369 19952537 -182375810 + L2 LINE L2 2367 2562 -752 4291 161 70 50 chr4 19954033 19955084 -182373263 - MER11C LTR ERVK 0 1071 1 275 191 0 0 chr4 19955819 19955866 -182372481 + MER5A DNA MER1_type 59 105 -84 390 294 175 0 chr4 19956358 19956518 -182371829 + MLT1K LTR MaLR 96 283 -305 258 269 146 31 chr4 19956929 19957081 -182371266 + MER5A DNA MER1_type 2 179 -10 203 0 44 67 chr4 19957270 19957315 -182371032 + (TTTTTG)n Simple_repeat Simple_repeat 3 46 0 542 214 48 37 chr4 19957418 19957605 -182370742 - MER53 DNA DNA 0 189 1 26 64 0 0 chr4 19957942 19957989 -182370358 + AT_rich Low_complexity Low_complexity 1 47 0 2070 136 10 0 chr4 19957992 19958287 -182370060 + AluSx SINE Alu 1 298 -14 715 317 54 8 chr4 19958516 19958756 -182369591 + MIR SINE MIR 12 262 0 209 176 0 0 chr4 19960130 19960164 -182368183 + CT-rich Low_complexity Low_complexity 2 35 0 983 116 27 14 chr4 19961157 19961304 -182367043 + AluSg SINE Alu 3 151 -159 320 303 158 21 chr4 19961524 19961759 -182366588 - L1M4 LINE L1 -753 5393 5124 31 0 0 0 chr4 19961812 19961843 -182366504 + AT_rich Low_complexity Low_complexity 1 31 0 408 315 82 30 chr4 19962125 19962455 -182365892 - L1M4 LINE L1 -1344 4802 4456 24 53 0 0 chr4 19962896 19962934 -182365413 + AT_rich Low_complexity Low_complexity 1 38 0 22 35 0 0 chr4 19963019 19963048 -182365299 + AT_rich Low_complexity Low_complexity 1 29 0 234 336 67 16 chr4 19963302 19963555 -182364792 - L1M4 LINE L1 -2683 3463 3198 1922 264 49 31 chr4 19964073 19964160 -182364187 + MLT1E LTR MaLR 4 88 -505 2732 178 12 0 chr4 19964160 19964650 -182363697 + LOR1a LTR ERV1 2 497 0 1922 264 49 31 chr4 19964650 19965133 -182363214 + MLT1E LTR MaLR 88 584 -9 44 0 0 0 chr4 19965295 19965339 -182363008 + AT_rich Low_complexity Low_complexity 1 44 0 210 167 0 0 chr4 19965341 19965377 -182362970 + (TA)n Simple_repeat Simple_repeat 2 37 0 1654 197 33 9 chr4 19965378 19965708 -182362639 + MER2 DNA MER2_type 1 338 -7 186 281 0 47 chr4 19966032 19966096 -182362251 - L2 LINE L2 -18 3254 3194 1501 88 93 0 chr4 19966144 19966359 -182361988 - LTR12 LTR ERV1 0 714 480 349 248 34 17 chr4 19966360 19966477 -182361870 - LTR30 LTR ERV1 -80 642 524 1588 86 102 45 chr4 19966477 19966721 -182361626 - LTR12 LTR ERV1 -456 258 1 238 335 52 61 chr4 19966955 19967171 -182361176 - MIR SINE MIR -35 227 16 256 373 59 17 chr4 19968203 19968321 -182360026 + L2 LINE L2 3112 3234 -38 208 418 37 0 chr4 19968449 19968583 -182359764 - L2 LINE L2 -777 2537 2399 271 366 58 12 chr4 19968697 19968869 -182359478 + L2 LINE L2 2935 3114 -158 3500 157 72 19 chr4 19970881 19971610 -182356737 + LTR1B LTR ERV1 1 785 0 764 232 27 58 chr4 19971622 19971846 -182356501 - MIR SINE MIR -10 252 36 1322 239 42 24 chr4 19972017 19972397 -182355950 - MLT1B LTR MaLR -3 387 1 653 309 98 24 chr4 19972439 19972776 -182355571 - MLT1I LTR MaLR -2 407 46 28 29 0 0 chr4 19973844 19973879 -182354468 + AT_rich Low_complexity Low_complexity 1 35 0 23 54 0 0 chr4 19973908 19973945 -182354402 + AT_rich Low_complexity Low_complexity 1 37 0 21 36 0 0 chr4 19973967 19973995 -182354352 + AT_rich Low_complexity Low_complexity 1 28 0 297 251 97 50 chr4 19974037 19974316 -182354031 + L1M4 LINE L1 4330 4621 -1525 22 35 0 0 chr4 19974339 19974368 -182353979 + AT_rich Low_complexity Low_complexity 1 29 0 1135 263 86 21 chr4 19974442 19974826 -182353521 - MLT1I LTR MaLR 0 409 1 308 303 0 74 chr4 19974975 19975097 -182353250 - L2 LINE L2 -2 3311 3199 1929 199 48 30 chr4 19975289 19975799 -182352548 + MER39 LTR ERV1 4 707 0 1786 154 8 63 chr4 19976091 19976454 -182351893 + MER61A LTR ERV1 1 343 0 1774 188 16 21 chr4 19976597 19976974 -182351373 - L1MC1 LINE L1 -17 6316 5942 1594 144 8 0 chr4 19976974 19977237 -182351110 - MER34C LTR ERV1 -293 292 28 429 291 0 0 chr4 19977252 19977393 -182350954 - L1M4 LINE L1 -1303 4843 4703 1492 239 42 26 chr4 19977401 19977778 -182350569 + MSTD LTR MaLR 14 396 0 5622 259 52 32 chr4 19977780 19979480 -182348867 + MSTD-int LTR MaLR 2 1735 0 1224 227 55 47 chr4 19979480 19979841 -182348506 + MSTD LTR MaLR 1 364 -32 2446 121 22 0 chr4 19979841 19980197 -182348150 - THE1B LTR MaLR 0 364 1 10116 123 4 46 chr4 19980201 19981830 -182346517 - THE1B-int LTR MaLR -6 1574 14 2149 154 23 0 chr4 19981832 19982183 -182346164 - THE1B LTR MaLR -3 361 3 3293 170 107 32 chr4 19982581 19982982 -182345365 + MER72 LTR ERV1 8 480 -242 2416 82 0 0 chr4 19982982 19983286 -182345061 - AluY SINE Alu -7 304 1 3293 170 107 32 chr4 19983286 19983549 -182344798 + MER72 LTR ERV1 480 722 0 246 288 0 0 chr4 19983635 19983708 -182344639 + MIR SINE MIR 134 206 -56 221 159 0 0 chr4 19983733 19983777 -182344570 + T-rich Low_complexity Low_complexity 2 45 0 28 71 0 0 chr4 19983777 19983833 -182344514 + AT_rich Low_complexity Low_complexity 1 56 0 22 35 0 0 chr4 19983895 19983924 -182344423 + AT_rich Low_complexity Low_complexity 1 29 0 1898 127 3 59 chr4 19983933 19984257 -182344090 - AluSc SINE Alu -3 306 1 547 248 34 20 chr4 19984457 19984606 -182343741 + MER58B DNA MER1_type 188 338 -3 25 0 0 0 chr4 19985022 19985047 -182343300 + AT_rich Low_complexity Low_complexity 1 25 0 5228 155 31 34 chr4 19985551 19986626 -182341721 - MER11C LTR ERVK 0 1071 1 397 339 75 55 chr4 19986903 19987319 -182341028 - L2 LINE L2 -64 3249 2826 223 325 43 43 chr4 19987367 19987484 -182340863 - L2 LINE L2 -679 2635 2519 21 0 0 0 chr4 19987538 19987559 -182340788 + AT_rich Low_complexity Low_complexity 1 21 0 280 336 46 23 chr4 19988044 19988175 -182340172 - MIR SINE MIR -30 232 99 2344 83 20 0 chr4 19989319 19989620 -182338727 - AluY SINE Alu -4 307 1 259 318 23 11 chr4 19990306 19990394 -182337953 + L2 LINE L2 3184 3272 0 801 231 17 132 chr4 19990553 19990908 -182337439 + MLT1A1 LTR MaLR 52 365 0 6282 18 0 0 chr4 19991682 19992399 -182335948 + L1PA3 LINE L1 5439 6155 0 400 273 73 13 chr4 19992486 19992636 -182335711 - MIR SINE MIR -68 194 36 1333 186 126 60 chr4 19992703 19993085 -182335262 - LTR8A LTR ERV1 0 727 321 676 98 0 0 chr4 19993081 19993173 -182335174 - LTR8A LTR ERV1 -635 92 1 * 242 304 118 10 chr4 19993175 19993277 -182335070 + MIR SINE MIR 44 156 -106 3990 116 21 68 chr4 19993319 19994035 -182334312 - LTR8 LTR ERV1 -9 682 1 270 247 26 0 chr4 19994857 19994934 -182333413 + MIR SINE MIR 140 218 -44 221 227 45 15 chr4 19995022 19995088 -182333259 - MIR SINE MIR -75 187 120 192 152 0 0 chr4 19995210 19995243 -182333104 + T-rich Low_complexity Low_complexity 1 33 0 21 36 0 0 chr4 19995317 19995345 -182333002 + AT_rich Low_complexity Low_complexity 1 28 0 311 253 11 11 chr4 19995451 19995546 -182332801 + (TAA)n Simple_repeat Simple_repeat 1 95 0 672 296 69 0 chr4 19995554 19995770 -182332577 - MIR SINE MIR -12 250 20 26 64 0 0 chr4 19996477 19996524 -182331823 + AT_rich Low_complexity Low_complexity 1 47 0 455 87 14 0 chr4 19997820 19997889 -182330458 + (TG)n Simple_repeat Simple_repeat 1 70 0 198 283 0 0 chr4 19998335 19998381 -182329966 + L2 LINE L2 3227 3272 0 1937 57 0 0 chr4 19998709 19998956 -182329391 - L1PA5 LINE L1 -4 6150 5904 1678 131 4 4 chr4 19999333 19999592 -182328755 + AluSg SINE Alu 49 307 -3 860 223 51 102 chr4 19999629 19999961 -182328386 - L1MA10 LINE L1 -2 6332 6018 2250 97 49 5 chr4 19999981 20000358 -182327989 + LTR7 LTR ERV1 1 450 0 2159 101 3 0 chr4 20000358 20000665 -182327682 + HERVH LTR ERV1 1 308 -7405 218 294 43 43 chr4 20000723 20000815 -182327532 + MIR SINE MIR 122 213 -49 1079 197 34 5 chr4 20001092 20001300 -182327047 - MER20 DNA MER1_type -5 214 1 530 259 90 90 chr4 20001334 20001589 -182326758 - MIR SINE MIR -5 257 3 27 29 0 0 chr4 20001683 20001717 -182326630 + AT_rich Low_complexity Low_complexity 1 34 0 301 298 65 24 chr4 20001916 20002040 -182326307 - MIR SINE MIR -119 143 15 22 35 0 0 chr4 20002564 20002593 -182325754 + AT_rich Low_complexity Low_complexity 1 29 0 374 242 33 64 chr4 20002878 20003040 -182325307 + MIR SINE MIR 54 212 -50 351 0 0 0 chr4 20004269 20004308 -182324039 + (TTCA)n Simple_repeat Simple_repeat 2 40 0 2000 217 98 38 chr4 20004896 20005722 -182322625 - L1MD3 LINE L1 0 7990 6902 203 255 157 0 chr4 20005872 20005923 -182322424 + L2 LINE L2 3200 3258 -55 284 325 50 0 chr4 20005959 20006039 -182322308 + L2 LINE L2 3217 3300 -13 224 289 0 0 chr4 20006519 20006571 -182321776 - L2 LINE L2 -2 3270 3219 249 339 62 9 chr4 20007156 20007268 -182321079 + MIR SINE MIR 89 206 -56 1840 153 3 34 chr4 20007283 20007609 -182320738 + Tigger1 DNA MER2_type 1 316 -2102 1907 123 4 0 chr4 20007609 20007877 -182320470 + AluSc SINE Alu 1 269 -40 506 287 11 80 chr4 20009318 20009506 -182318841 - MER5A DNA MER1_type -6 183 9 277 322 67 61 chr4 20009496 20009676 -182318671 - MIR SINE MIR -69 193 13 * 672 208 198 43 chr4 20010907 20011114 -182317233 + MIR SINE MIR 24 262 0 1018 118 44 44 chr4 20011464 20011537 -182316810 + L1PA16 LINE L1 5963 6035 -131 1292 150 87 113 chr4 20011537 20011997 -182316350 - LTR7 LTR ERV1 -2 448 1 1018 118 44 44 chr4 20011997 20012127 -182316220 + L1PA16 LINE L1 6034 6166 0 24 67 0 0 chr4 20014124 20014169 -182314178 + AT_rich Low_complexity Low_complexity 1 45 0 269 297 85 8 chr4 20014215 20014333 -182314014 - L2 LINE L2 0 3272 3146 284 294 71 0 chr4 20014608 20014693 -182313654 + MIR SINE MIR 90 180 -82 411 217 57 74 chr4 20015004 20015179 -182313168 + Charlie7 DNA MER1_type 2440 2611 -1 1693 149 64 10 chr4 20015320 20015615 -182312732 - AluSx SINE Alu -1 311 1 715 303 149 20 chr4 20015757 20016199 -182312148 + LTR33 LTR ERVL 16 514 -7 566 189 14 81 chr4 20016315 20016463 -182311884 - MLT2A2 LTR ERVL -47 406 269 470 238 191 0 chr4 20016862 20017009 -182311338 - MIR SINE MIR 0 262 88 209 210 16 0 chr4 20018939 20019001 -182309346 + (TAG)n Simple_repeat Simple_repeat 1 63 0 542 315 33 6 chr4 20019043 20019224 -182309123 - MIR SINE MIR -64 198 13 1083 237 63 47 chr4 20019944 20020307 -182308040 + MLT1B LTR MaLR 22 390 0 186 43 0 0 chr4 20020416 20020439 -182307908 + (T)n Simple_repeat Simple_repeat 1 23 0 1476 198 33 63 chr4 20020764 20021163 -182307184 + MLT1B LTR MaLR 3 389 -1 477 311 107 6 chr4 20021313 20021490 -182306857 - MIR3 SINE MIR -6 202 8 216 67 0 0 chr4 20021889 20021919 -182306428 + (CCA)n Simple_repeat Simple_repeat 3 32 0 185 365 0 0 chr4 20022974 20023059 -182305288 + MIR SINE MIR 137 221 -41 797 213 19 53 chr4 20023462 20023669 -182304678 - MLT2B1 LTR ERVL -320 200 1 27 0 0 0 chr4 20023876 20023903 -182304444 + AT_rich Low_complexity Low_complexity 1 27 0 1767 157 3 11 chr4 20023967 20024281 -182304066 + AluSx SINE Alu 1 312 0 196 298 60 0 chr4 20024482 20024566 -182303781 + MIR SINE MIR 101 189 -73 1810 235 85 66 chr4 20024901 20025549 -182302798 + MLT2F LTR ERVL 1 660 -3 1962 152 0 0 chr4 20025649 20025938 -182302409 - AluSx SINE Alu -13 299 11 2876 118 9 5 chr4 20026351 20026782 -182301565 + MER57B LTR ERV1 1 433 -1 29 0 0 0 chr4 20026859 20026888 -182301459 + AT_rich Low_complexity Low_complexity 1 29 0 687 303 56 25 chr4 20027600 20027923 -182300424 + L2 LINE L2 2298 2630 -684 298 294 104 50 chr4 20027937 20028138 -182300209 + L2 LINE L2 3085 3296 -17 42 20 0 0 chr4 20028169 20028218 -182300129 + AT_rich Low_complexity Low_complexity 1 49 0 2359 62 10 23 chr4 20028314 20028618 -182299729 + AluY SINE Alu 1 300 -11 636 311 48 12 chr4 20028738 20028986 -182299361 + LTR16C LTR ERVL 144 400 -91 1804 75 0 16 chr4 20029260 20029512 -182298835 - L1PA13 LINE L1 0 6163 5916 403 247 40 20 chr4 20029827 20029977 -182298370 + MER103 DNA DNA 4 156 -10 1323 98 0 0 chr4 20030313 20030532 -182297815 + AluY SINE Alu 127 311 0 181 293 91 40 chr4 20031380 20031479 -182296868 - L2 LINE L2 -4 3309 3206 734 191 30 0 chr4 20031749 20031880 -182296467 - AluJo SINE Alu -177 135 1 21 71 0 0 chr4 20031935 20031977 -182296370 + AT_rich Low_complexity Low_complexity 1 42 0 399 21 0 0 chr4 20032467 20032515 -182295832 + (TAGA)n Simple_repeat Simple_repeat 2 49 0 36 40 0 0 chr4 20033624 20033674 -182294673 + AT_rich Low_complexity Low_complexity 1 50 0 367 361 18 12 chr4 20034178 20034344 -182294003 - MIR SINE MIR -94 168 2 180 0 0 0 chr4 20034569 20034589 -182293758 + (CAA)n Simple_repeat Simple_repeat 2 21 0 198 103 0 0 chr4 20035323 20035352 -182292995 + (GAA)n Simple_repeat Simple_repeat 2 30 0 194 326 0 0 chr4 20035948 20035997 -182292350 + L2 LINE L2 3210 3258 -14 * 322 335 108 7 chr4 20035981 20036196 -182292151 + MIR SINE MIR 17 245 -17 305 211 37 37 chr4 20036380 20036541 -182291806 + (TA)n Simple_repeat Simple_repeat 2 162 0 1805 189 35 9 chr4 20037198 20037536 -182290811 + MLT1A1 LTR MaLR 19 365 0 788 47 0 0 chr4 20037724 20037874 -182290473 + L1PA4 LINE L1 6036 6166 0 220 389 62 35 chr4 20038855 20039112 -182289235 + L2 LINE L2 2804 3067 -205 928 43 0 0 chr4 20040953 20041070 -182287277 - L1PA4 LINE L1 -3 6152 6036 310 50 0 0 chr4 20041076 20041116 -182287231 + tRNA-Pro-CCT tRNA tRNA 1 40 -35 2046 171 0 3 chr4 20041301 20041658 -182286689 - MER46B DNA MER2_type -1 235 5 273 272 19 29 chr4 20042060 20042163 -182286184 + GA-rich Low_complexity Low_complexity 2 103 0 206 313 151 11 chr4 20042437 20042616 -182285731 + MIR SINE MIR 32 235 -27 335 212 92 115 chr4 20043204 20043421 -182284926 - MIR SINE MIR -4 258 47 30983 114 11 56 chr4 20043443 20047362 -182280985 + L1PA7 LINE L1 3 3515 -2639 2188 188 11 30 chr4 20047362 20047829 -182280518 - LTR22A LTR ERVK 0 458 1 30983 114 11 56 chr4 20047829 20050347 -182278000 + L1PA7 LINE L1 3515 6143 -11 278 247 19 43 chr4 20050357 20050496 -182277851 - L1MD2 LINE L1 -17 6149 6016 661 221 0 51 chr4 20050551 20050734 -182277613 - L1MD2 LINE L1 -274 5880 5726 735 300 40 0 chr4 20050884 20051107 -182277240 + MIR SINE MIR 3 234 -28 21 36 0 0 chr4 20051151 20051179 -182277168 + AT_rich Low_complexity Low_complexity 1 28 0 2062 141 33 25 chr4 20052480 20052841 -182275506 - THE1B LTR MaLR 0 364 1 253 306 50 58 chr4 20052841 20053083 -182275264 + L2 LINE L2 2380 2619 -695 539 250 130 76 chr4 20053093 20053517 -182274830 - MLT1G3 LTR MaLR -26 523 75 998 314 63 10 chr4 20053568 20054017 -182274330 + L2 LINE L2 2617 3084 -229 699 164 16 0 chr4 20054058 20054180 -182274167 - AluSg/x SINE Alu -6 304 181 275 329 0 0 chr4 20054644 20054729 -182273618 + Charlie1 DNA MER1_type 42 126 -2635 190 336 196 7 chr4 20055750 20055893 -182272454 + MIR3 SINE MIR 33 202 -6 2133 113 0 3 chr4 20056301 20056585 -182271762 + AluSx SINE Alu 1 283 -29 21 0 0 0 chr4 20056594 20056615 -182271732 + AT_rich Low_complexity Low_complexity 1 21 0 206 304 14 0 chr4 20058525 20058594 -182269753 + (TATATG)n Simple_repeat Simple_repeat 3 72 0 288 209 20 20 chr4 20058966 20059116 -182269231 + GA-rich Low_complexity Low_complexity 1 150 0 212 0 36 0 chr4 20059847 20059875 -182268472 + (CAA)n Simple_repeat Simple_repeat 2 30 0 360 183 39 33 chr4 20060513 20060666 -182267681 + (TATAA)n Simple_repeat Simple_repeat 5 158 0 236 100 0 20 chr4 20060707 20060757 -182267590 + (TA)n Simple_repeat Simple_repeat 1 49 0 213 225 14 14 chr4 20060758 20060829 -182267518 + (TAGA)n Simple_repeat Simple_repeat 2 72 0 22 70 0 0 chr4 20060836 20060879 -182267468 + AT_rich Low_complexity Low_complexity 1 43 0 213 329 49 12 chr4 20060979 20061061 -182267286 + L2 LINE L2 3187 3271 -1 613 256 19 0 chr4 20061209 20061220 -182267127 - L1MA10 LINE L1 -3 6331 6321 533 265 14 68 chr4 20061220 20061439 -182266908 - L1ME1 LINE L1 -5 6161 5955 414 39 0 0 chr4 20061439 20061491 -182266856 + (T)n Simple_repeat Simple_repeat 1 52 0 43111 30 21 1 chr4 20061493 20067524 -182260823 - L1HS LINE L1 0 6155 3 335 174 116 0 chr4 20067573 20067659 -182260688 - L1ME1 LINE L1 -280 5886 5791 1822 188 29 9 chr4 20068529 20068869 -182259478 + MER7A DNA MER2_type 1 345 -1 412 48 32 0 chr4 20069619 20069682 -182258665 + (CA)n Simple_repeat Simple_repeat 2 66 0 323 338 59 15 chr4 20070990 20071126 -182257221 + MER5A DNA MER1_type 47 188 -1 2471 172 23 79 chr4 20071165 20071771 -182256576 - LTR8 LTR ERV1 -8 683 112 8473 110 8 7 chr4 20071774 20072985 -182255362 + HERVL-B3 LTR ERVL 4442 5654 0 2031 211 50 67 chr4 20072985 20073549 -182254798 + MLT2B3 LTR ERVL 1 554 0 5563 124 11 21 chr4 20073564 20073822 -182254525 + L1PA15 LINE L1 5254 5513 -652 2464 139 61 5 chr4 20073822 20074233 -182254114 + MER61C LTR ERV1 1 434 0 5563 124 11 21 chr4 20074233 20074890 -182253457 + L1PA15 LINE L1 5513 6160 -5 969 189 9 48 chr4 20075237 20075464 -182252883 + MER20 DNA MER1_type 2 219 0 224 154 39 39 chr4 20075614 20075666 -182252681 + L2 LINE L2 2737 2788 -526 656 286 11 0 chr4 20075669 20075854 -182252493 - MER5A DNA MER1_type -2 187 1 21 0 0 0 chr4 20076272 20076293 -182252054 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr4 20076352 20076380 -182251967 + AT_rich Low_complexity Low_complexity 1 28 0 338 312 43 66 chr4 20076685 20076986 -182251361 - L1ME1 LINE L1 -448 5722 5429 234 0 0 0 chr4 20077001 20077027 -182251320 + (T)n Simple_repeat Simple_repeat 1 26 0 183 100 0 0 chr4 20077110 20077140 -182251207 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 237 206 41 14 chr4 20077186 20077259 -182251088 - L1ME1 LINE L1 -953 5193 5119 242 223 49 0 chr4 20078067 20078151 -182250196 + MIR3 SINE MIR 98 190 -18 242 286 32 0 chr4 20078331 20078394 -182249953 + L2 LINE L2 3241 3305 -8 213 269 26 13 chr4 20078664 20078742 -182249605 + GA-rich Low_complexity Low_complexity 4 82 0 302 252 69 38 chr4 20078742 20078901 -182249446 + MLT1K LTR MaLR 399 562 -26 221 217 17 50 chr4 20079124 20079184 -182249163 + L2 LINE L2 3254 3311 -2 337 121 15 15 chr4 20079410 20079476 -182248871 + GA-rich Low_complexity Low_complexity 3 68 0 451 314 74 54 chr4 20080639 20080881 -182247466 + MIR SINE MIR 2 248 -14 184 343 62 45 chr4 20081294 20081472 -182246875 + L2 LINE L2 2796 2976 -338 364 229 47 106 chr4 20081788 20081958 -182246389 - MLT1H1 LTR MaLR -340 206 43 216 313 209 28 chr4 20082104 20082286 -182246061 + MIR SINE MIR 48 262 0 284 299 81 0 chr4 20082729 20082816 -182245531 - MIR SINE MIR -60 148 55 1846 124 118 24 chr4 20083391 20083722 -182244625 + THE1B LTR MaLR 1 362 -2 246 373 73 0 chr4 20083838 20083948 -182244399 + L2 LINE L2 3155 3272 0 447 309 96 50 chr4 20084519 20084959 -182243388 + MER90 LTR ERV1 78 576 -38 865 146 0 0 chr4 20085164 20085308 -182243039 - L1MA3 LINE L1 -317 5988 5845 1857 114 29 7 chr4 20085308 20085616 -182242731 + L1MA3 LINE L1 5991 6305 0 1276 204 31 28 chr4 20085619 20085942 -182242405 - MLT1A1 LTR MaLR -32 333 10 1395 181 126 6 chr4 20086794 20087120 -182241227 + MLT1A1 LTR MaLR 1 365 0 303 93 0 0 chr4 20087298 20087341 -182241006 + (TC)n Simple_repeat Simple_repeat 2 44 0 402 292 90 7 chr4 20087612 20087756 -182240591 + MIR SINE MIR 97 252 -10 1834 129 7 11 chr4 20088002 20088308 -182240039 + AluSq SINE Alu 34 338 0 232 250 88 0 chr4 20088369 20088449 -182239898 + MLT1K LTR MaLR 371 457 -131 350 274 92 49 chr4 20089405 20089569 -182238778 + MIR SINE MIR 18 188 -74 2209 102 3 3 chr4 20090855 20091150 -182237197 - AluSx SINE Alu -17 295 1 1559 215 31 111 chr4 20091227 20091776 -182236571 + MLT1D LTR MaLR 1 505 0 978 198 62 5 chr4 20091783 20091975 -182236372 - MER58A DNA MER1_type -15 209 7 195 259 111 0 chr4 20092021 20092075 -182236272 + MIR SINE MIR 84 143 -119 251 329 111 33 chr4 20092217 20092460 -182235887 + MLT1J1 LTR MaLR 114 375 -71 199 253 158 21 chr4 20092506 20092601 -182235746 + MIR SINE MIR 151 258 -4 191 273 0 23 chr4 20093286 20093330 -182235017 + L2 LINE L2 3256 3298 -15 384 254 9 9 chr4 20094423 20094533 -182233814 - HAL1 LINE L1 -856 1651 1542 241 214 29 0 chr4 20094535 20094605 -182233742 - Charlie8 DNA MER1_type -1928 489 418 555 250 45 100 chr4 20094946 20095146 -182233201 - MER5A DNA MER1_type 0 189 1 377 314 0 64 chr4 20095146 20095350 -182232997 - HAL1 LINE L1 -333 2174 1984 24 0 0 0 chr4 20095368 20095392 -182232955 + AT_rich Low_complexity Low_complexity 1 24 0 737 280 110 3 chr4 20095462 20095762 -182232585 - HAL1 LINE L1 -708 1799 1468 387 0 0 0 chr4 20095774 20095817 -182232530 + (TG)n Simple_repeat Simple_repeat 2 44 0 255 152 0 0 chr4 20096003 20096049 -182232298 + (TG)n Simple_repeat Simple_repeat 1 46 0 228 254 0 0 chr4 20096760 20096819 -182231528 + (TTA)n Simple_repeat Simple_repeat 3 61 0 181 267 0 22 chr4 20097000 20097045 -182231302 + L3 LINE CR1 605 648 -929 312 198 45 18 chr4 20097359 20097470 -182230877 + (TA)n Simple_repeat Simple_repeat 2 115 0 261 285 66 73 chr4 20098210 20098495 -182229852 - L1ME4a LINE L1 -16 6105 5820 890 205 88 86 chr4 20098495 20098797 -182229550 - MLT1B LTR MaLR -2 388 83 2099 126 0 3 chr4 20098797 20099090 -182229257 + AluSx SINE Alu 1 292 -20 890 205 88 86 chr4 20099090 20099173 -182229174 - MLT1B LTR MaLR -307 83 2 261 285 66 73 chr4 20099173 20099616 -182228731 - L1ME4a LINE L1 -301 5820 5382 212 342 102 21 chr4 20099772 20099959 -182228388 + L2 LINE L2 2857 3058 -214 1601 209 55 10 chr4 20100505 20100903 -182227444 - L1MC3 LINE L1 -7 7778 7363 778 227 135 5 chr4 20100903 20101088 -182227259 - MLT1A1 LTR MaLR 0 365 157 484 232 10 0 chr4 20101088 20101187 -182227160 - L1MC4a LINE L1 -1036 6772 6673 244 309 198 19 chr4 20102642 20102849 -182225498 - MIR SINE MIR 0 262 19 1783 167 0 3 chr4 20103465 20103777 -182224570 - AluY SINE Alu 0 311 1 29 78 0 0 chr4 20203996 20204060 -182124287 + AT_rich Low_complexity Low_complexity 1 64 0 395 281 117 29 chr4 20204123 20204294 -182124053 - MER5A DNA MER1_type -3 186 1 24 67 0 0 chr4 20206173 20206218 -182122129 + AT_rich Low_complexity Low_complexity 1 45 0 22 35 0 0 chr4 20206384 20206413 -182121934 + AT_rich Low_complexity Low_complexity 1 29 0 279 0 0 0 chr4 20206583 20206614 -182121733 + (TG)n Simple_repeat Simple_repeat 2 32 0 276 344 62 23 chr4 20206858 20206986 -182121361 - L2 LINE L2 -2 3311 3179 887 18 18 9 chr4 20207068 20207182 -182121165 - L1PA4 LINE L1 0 6155 6041 23 33 0 0 chr4 20207566 20207596 -182120751 + AT_rich Low_complexity Low_complexity 1 30 0 2280 104 0 3 chr4 20207666 20207973 -182120374 - AluSc SINE Alu -1 308 3 180 0 0 0 chr4 20208735 20208755 -182119592 + (TG)n Simple_repeat Simple_repeat 1 20 0 527 72 0 0 chr4 20208911 20208980 -182119367 + MER41B LTR ERV1 567 635 0 866 197 34 0 chr4 20208999 20209207 -182119140 - L1MA8 LINE L1 -4 6287 6073 1178 147 5 10 chr4 20209214 20209411 -182118936 + L1MA8 LINE L1 5885 6080 -211 1492 124 0 18 chr4 20209659 20209877 -182118470 - AluSx SINE Alu -9 303 90 4927 129 18 7 chr4 20209877 20210647 -182117700 - MER4E LTR ERV1 0 779 1 619 161 0 0 chr4 20210647 20210740 -182117607 - AluSx SINE Alu -220 93 1 213 371 34 0 chr4 20211599 20211688 -182116659 + MIR SINE MIR 86 177 -85 23 0 0 0 chr4 20212352 20212375 -182115972 + AT_rich Low_complexity Low_complexity 1 23 0 569 278 120 29 chr4 20214330 20214539 -182113808 + MIR SINE MIR 32 259 -3 2003 110 3 7 chr4 20215098 20215380 -182112967 + AluY SINE Alu 1 281 -30 251 170 21 0 chr4 20215480 20215527 -182112820 - MER5B DNA MER1_type -124 54 7 597 272 53 6 chr4 20215540 20215709 -182112638 + MER5A DNA MER1_type 2 178 -11 24 53 0 0 chr4 20215943 20215981 -182112366 + AT_rich Low_complexity Low_complexity 1 38 0 315 364 8 8 chr4 20216107 20216225 -182112122 - MIR SINE MIR -129 133 16 1251 199 19 0 chr4 20216790 20217056 -182111291 - L1PA16 LINE L1 -10 6156 5886 306 0 0 0 chr4 20217305 20217339 -182111008 + (CA)n Simple_repeat Simple_repeat 2 35 0 180 0 0 0 chr4 20217380 20217400 -182110947 + (TTCA)n Simple_repeat Simple_repeat 1 20 0 2366 133 66 15 chr4 20217836 20218243 -182110104 - MSTA LTR MaLR 0 428 1 2582 158 25 27 chr4 20218243 20218729 -182109618 - MSTA-int LTR MaLR 0 1651 1167 8530 85 19 0 chr4 20218730 20219456 -182108891 + HERVL-A2 LTR ERVL 4489 5246 -408 212 0 36 0 chr4 20219456 20219484 -182108863 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 8530 85 19 0 chr4 20219484 20219900 -182108447 + HERVL-A2 LTR ERVL 5246 5653 -1 2999 90 51 5 chr4 20219901 20220334 -182108013 + MLT2A2 LTR ERVL 1 453 0 610 261 61 87 chr4 20220337 20220648 -182107699 - MLT1C LTR MaLR -164 303 1 2304 95 7 3 chr4 20220968 20221274 -182107073 - AluSx SINE Alu 0 312 6 28 48 0 0 chr4 20221389 20221431 -182106916 + AT_rich Low_complexity Low_complexity 1 42 0 289 263 25 75 chr4 20221507 20221667 -182106680 - MER103 DNA DNA -13 153 2 25 99 0 0 chr4 20221994 20222075 -182106272 + AT_rich Low_complexity Low_complexity 1 81 0 388 136 0 0 chr4 20222178 20222237 -182106110 + THE1B LTR MaLR 306 364 0 4872 217 21 65 chr4 20222237 20222364 -182105983 - L1MC/D LINE L1 -692 5491 5360 635 65 11 0 chr4 20222364 20222456 -182105891 - L1MA1 LINE L1 0 6302 6210 4872 217 21 65 chr4 20222456 20222493 -182105854 - L1MC/D LINE L1 -823 5360 5323 221 0 0 33 chr4 20222493 20222523 -182105824 + (TTTTA)n Simple_repeat Simple_repeat 1 29 0 2414 81 3 12 chr4 20222525 20222860 -182105487 - L1PA7 LINE L1 -4 6150 5819 4872 217 21 65 chr4 20222860 20224659 -182103688 - L1MC/D LINE L1 -861 5322 3725 1991 167 108 15 chr4 20224666 20225056 -182103291 - MSTB LTR MaLR 0 426 1 3961 209 116 26 chr4 20225062 20226159 -182102188 - MSTB-int LTR MaLR -7 1644 317 2286 82 4 0 chr4 20226159 20226439 -182101908 - AluSp SINE Alu -32 281 1 3961 209 116 26 chr4 20226439 20226786 -182101561 - MSTB-int LTR MaLR -1334 317 3 1913 183 80 10 chr4 20226786 20227184 -182101163 - MSTB LTR MaLR 0 426 1 641 243 88 20 chr4 20227186 20227437 -182100910 - L1 LINE L1 -2424 3722 3455 974 223 19 28 chr4 20227456 20227775 -182100572 - L1 LINE L1 -2772 3374 3059 1009 294 137 4 chr4 20228168 20228634 -182099713 - L1ME3A LINE L1 -5 6165 5638 269 272 0 22 chr4 20228624 20228716 -182099631 + L1MC4 LINE L1 6614 6703 -1339 * 250 200 0 25 chr4 20228720 20228800 -182099547 + (TA)n Simple_repeat Simple_repeat 2 79 0 23 33 0 0 chr4 20228825 20228855 -182099492 + AT_rich Low_complexity Low_complexity 1 30 0 492 376 32 29 chr4 20228979 20229322 -182099025 - L3 LINE CR1 -6 1571 1228 340 328 55 45 chr4 20229594 20229795 -182098552 - L3 LINE CR1 -477 1100 898 1043 221 84 58 chr4 20231419 20231799 -182096548 + MLT1B LTR MaLR 1 390 0 180 111 0 0 chr4 20231959 20231986 -182096361 + (CTA)n Simple_repeat Simple_repeat 1 27 0 1392 129 0 0 chr4 20231993 20232186 -182096161 - AluSg/x SINE Alu -22 290 98 236 343 0 0 chr4 20232812 20232885 -182095462 - L2 LINE L2 0 3313 3241 273 178 9 84 chr4 20233053 20233160 -182095187 + (CATATA)n Simple_repeat Simple_repeat 4 102 0 1235 237 41 109 chr4 20233205 20233598 -182094749 - MLT2B1 LTR ERVL -48 366 1 230 205 0 60 chr4 20233621 20233704 -182094643 + (CATATA)n Simple_repeat Simple_repeat 4 81 0 4993 167 65 11 chr4 20233704 20234663 -182093684 - ERVL-B1 LTR ERVL -51 5713 4704 879 240 77 28 chr4 20234663 20235007 -182093340 - MSTD LTR MaLR 0 396 6 2442 241 31 22 chr4 20235042 20235586 -182092761 - MSTD-int LTR MaLR 0 1735 1187 662 279 0 0 chr4 20235602 20235763 -182092584 - HERVL-B1 LTR ERVL -5491 163 3 1032 152 0 0 chr4 20235783 20235948 -182092399 - MER65A LTR ERV1 -47 398 234 320 50 0 0 chr4 20235987 20236027 -182092320 + HERVL LTR ERVL 1 40 -5614 233 147 53 27 chr4 20236027 20236102 -182092245 + (TATAA)n Simple_repeat Simple_repeat 3 79 0 1442 241 111 24 chr4 20236106 20236136 -182092211 - MLT2B1 LTR ERVL -31 453 427 276 30 0 0 chr4 20236136 20236169 -182092178 + (CA)n Simple_repeat Simple_repeat 2 34 0 1442 241 111 24 chr4 20236169 20236588 -182091759 - MLT2B1 LTR ERVL -57 427 1 344 222 29 8 chr4 20236629 20236880 -182091467 + (TA)n Simple_repeat Simple_repeat 1 256 0 3037 121 104 105 chr4 20236880 20237632 -182090715 - Tigger3(Golem) DNA MER2_type -2 3027 2277 575 252 17 0 chr4 20237609 20237728 -182090619 - Tigger3(Golem) DNA MER2_type -2907 122 2 * 316 271 8 45 chr4 20237728 20237861 -182090486 + (CATATA)n Simple_repeat Simple_repeat 2 129 0 299 176 0 15 chr4 20237861 20237929 -182090418 + (CA)n Simple_repeat Simple_repeat 2 68 0 848 210 6 0 chr4 20237954 20238116 -182090231 - MLT2B1 LTR ERVL -357 163 1 269 383 27 13 chr4 20238250 20238399 -182089948 + MIR3 SINE MIR 30 180 -28 227 307 44 51 chr4 20238546 20238683 -182089664 - MIR SINE MIR -3 259 124 711 280 105 52 chr4 20238779 20239218 -182089129 + MLT1C LTR MaLR 6 467 0 219 293 0 89 chr4 20239977 20240100 -182088247 + MIR SINE MIR 121 232 -30 436 258 174 24 chr4 20240933 20241100 -182087247 - MIR SINE MIR 0 262 71 1388 248 98 21 chr4 20241399 20241826 -182086521 - MLT1E LTR MaLR -7 586 127 1517 167 12 0 chr4 20242153 20242410 -182085937 - L1MC1 LINE L1 0 6333 6074 1233 127 25 15 chr4 20242511 20242708 -182085639 - THE1B LTR MaLR -152 212 14 2911 182 10 17 chr4 20242712 20243311 -182085036 + L1MB2 LINE L1 5573 6167 -4 1155 251 92 8 chr4 20243518 20244116 -182084231 - MER114 LTR ERV 0 648 1 655 285 77 59 chr4 20244838 20245161 -182083186 - LTR16A LTR ERVL -27 423 95 187 330 90 20 chr4 20246034 20246134 -182082213 + MIR SINE MIR 1 107 -155 5512 184 32 30 chr4 20246452 20247879 -182080468 - L1PA16 LINE L1 -338 5828 4401 221 0 35 0 chr4 20247879 20247908 -182080439 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 5512 184 32 30 chr4 20247908 20248325 -182080022 - L1PA16 LINE L1 -1765 4401 3986 227 281 62 31 chr4 20248404 20248500 -182079847 - MER103 DNA DNA -11 155 57 548 206 63 8 chr4 20248668 20248794 -182079553 - MLT1A1 LTR MaLR -229 136 4 25 51 0 0 chr4 20248810 20248849 -182079498 + AT_rich Low_complexity Low_complexity 1 39 0 187 311 122 14 chr4 20248941 20249015 -182079332 + L2 LINE L2 3179 3260 -12 375 317 120 0 chr4 20249272 20249414 -182078933 + L2 LINE L2 3106 3264 -8 657 238 17 28 chr4 20249984 20250164 -182078183 - MLT1A1 LTR MaLR -54 311 134 1862 211 29 93 chr4 20250164 20250714 -182077633 - MLT2B2 LTR ERVL 0 515 1 691 183 53 8 chr4 20250715 20250846 -182077501 - MLT1A1 LTR MaLR -228 137 1 1781 315 37 60 chr4 20251071 20251962 -182076385 + L1PA16 LINE L1 1 871 -5916 13146 227 30 47 chr4 20251985 20255535 -182072812 + L1PA16 LINE L1 1341 4780 -2037 638 37 0 0 chr4 20255535 20255611 -182072736 + L1PA7 LINE L1 6072 6152 -2 13146 227 30 47 chr4 20255611 20257610 -182070737 + L1PA16 LINE L1 4780 6812 -5 88 46 0 0 chr4 20257628 20257758 -182070589 + AT_rich Low_complexity Low_complexity 1 130 0 1071 214 88 13 chr4 20259419 20259737 -182068610 + MER2 DNA MER2_type 3 344 0 405 0 0 0 chr4 20259753 20259798 -182068549 + (TG)n Simple_repeat Simple_repeat 2 46 0 365 316 18 96 chr4 20260033 20260305 -182068042 + LTR67 LTR ERVL 12 262 -295 27 29 0 0 chr4 20261018 20261052 -182067295 + AT_rich Low_complexity Low_complexity 1 34 0 2639 116 5 13 chr4 20261072 20261083 -182067264 + THE1C LTR MaLR 1 11 -364 4821 82 25 23 chr4 20261083 20261770 -182066577 + LTR12 LTR ERV1 1 688 0 2639 116 5 13 chr4 20261770 20262136 -182066211 + THE1C LTR MaLR 11 375 0 1064 226 5 0 chr4 20262136 20262348 -182065999 - MER58A DNA MER1_type 0 224 12 180 77 0 0 chr4 20262379 20262405 -182065942 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 780 279 40 5 chr4 20262777 20262999 -182065348 + MIR SINE MIR 7 236 -26 1238 288 119 34 chr4 20263143 20263696 -182064651 - MLT1E2 LTR MaLR -5 621 22 5102 237 40 26 chr4 20264011 20264383 -182063964 - L1 LINE L1 -2338 5227 4862 1768 63 9 0 chr4 20264383 20264604 -182063743 - AluSp SINE Alu -2 311 89 5102 237 40 26 chr4 20264604 20264962 -182063385 - L1 LINE L1 -2703 4862 4510 2216 87 3 16 chr4 20264962 20265271 -182063076 - AluSx SINE Alu -7 305 1 5102 237 40 26 chr4 20265271 20266074 -182062273 - L1 LINE L1 -3055 4510 3672 1160 198 17 139 chr4 20266096 20266505 -182061842 - MLT1A1 LTR MaLR -6 359 1 618 239 28 23 chr4 20266505 20266719 -182061628 - L1 LINE L1 -3917 3648 3434 1722 83 31 10 chr4 20266743 20267001 -182061346 - LTR12 LTR ERV1 0 714 349 561 72 0 0 chr4 20266998 20267067 -182061280 - LTR12 LTR ERV1 -593 121 53 * 239 250 0 0 chr4 20267067 20267119 -182061228 - LTR30 LTR ERV1 -670 52 1 503 255 76 11 chr4 20267120 20267380 -182060967 - L1 LINE L1 -4130 3435 3155 644 303 46 20 chr4 20267800 20268114 -182060233 + MLT1I LTR MaLR 64 409 0 385 331 0 8 chr4 20269254 20269375 -182058972 + MIR SINE MIR 15 134 -128 686 220 29 23 chr4 20269645 20269818 -182058529 - MIR SINE MIR 0 262 89 270 253 0 76 chr4 20270057 20270136 -182058211 - L2 LINE L2 -2 3311 3239 182 297 47 70 chr4 20270810 20270938 -182057409 + L2 LINE L2 3186 3310 -3 2790 123 34 0 chr4 20271484 20271892 -182056455 - MER57B LTR ERV1 0 434 13 255 152 38 0 chr4 20272016 20272095 -182056252 + (TAGA)n Simple_repeat Simple_repeat 4 85 0 239 317 19 0 chr4 20272098 20272202 -182056145 - L1MC4 LINE L1 -1324 6718 6613 223 226 0 19 chr4 20272203 20272256 -182056091 + (TA)n Simple_repeat Simple_repeat 1 52 0 325 186 0 0 chr4 20273023 20273082 -182055265 + L1MB5 LINE L1 6108 6166 -8 192 77 0 0 chr4 20273105 20273131 -182055216 + (A)n Simple_repeat Simple_repeat 1 26 0 180 321 62 12 chr4 20273142 20273223 -182055124 - MIR SINE MIR -156 106 22 260 250 125 36 chr4 20273348 20273460 -182054887 - MIR SINE MIR -121 141 20 2109 111 14 0 chr4 20274136 20274433 -182053914 - AluSc SINE Alu -8 301 1 289 307 47 31 chr4 20274471 20274598 -182053749 - MIR SINE MIR -98 164 36 231 322 42 106 chr4 20274796 20275060 -182053287 - L2 LINE L2 -4 3268 3022 234 128 0 0 chr4 20275301 20275340 -182053007 + (TG)n Simple_repeat Simple_repeat 1 39 0 219 342 5 14 chr4 20275370 20275465 -182052882 - MER91 DNA MER1_type -3 187 101 23 0 0 0 chr4 20275761 20275784 -182052563 + AT_rich Low_complexity Low_complexity 1 23 0 406 268 8 49 chr4 20276071 20276194 -182052153 - L2 LINE L2 -4 3309 3192 470 209 8 0 chr4 20276866 20276881 -182051466 + (TA)n Simple_repeat Simple_repeat 2 15 -116 316 138 0 0 chr4 20276881 20276946 -182051401 - L1PB3 LINE L1 -1 6153 6089 470 209 8 0 chr4 20276946 20276988 -182051359 + (TA)n Simple_repeat Simple_repeat 15 55 -76 4576 128 19 26 chr4 20276988 20277779 -182050568 - LTR1 LTR ERV1 0 785 1 219 69 0 0 chr4 20277782 20277811 -182050536 + (TG)n Simple_repeat Simple_repeat 2 30 0 470 209 8 0 chr4 20277811 20277849 -182050498 + (TA)n Simple_repeat Simple_repeat 56 131 0 3721 148 42 2 chr4 20277934 20278549 -182049798 - MER39B LTR ERV1 0 653 14 1034 208 105 68 chr4 20278667 20279095 -182049252 - MER39 LTR ERV1 -3 704 261 561 164 78 8 chr4 20279256 20279384 -182048963 - LTR48 LTR ERV1 -42 745 609 1480 203 121 34 chr4 20279411 20279850 -182048497 - LTR48 LTR ERV1 -310 477 1 548 146 0 24 chr4 20280759 20280882 -182047465 + (GGAA)n Simple_repeat Simple_repeat 1 120 0 486 333 45 5 chr4 20281032 20281233 -182047114 + MIR SINE MIR 47 255 -7 530 264 63 55 chr4 20281348 20281731 -182046616 - Charlie2 DNA MER1_type -249 2613 2228 480 315 113 0 chr4 20281769 20281991 -182046356 - Charlie2 DNA MER1_type -2467 315 69 5725 60 10 7 chr4 20282230 20283370 -182044977 - L1PA7 LINE L1 0 6154 4995 1373 248 15 24 chr4 20283470 20283528 -182044819 - L1M4 LINE L1 -3035 2999 2942 2566 129 44 2 chr4 20283528 20283939 -182044408 + MSTA LTR MaLR 1 428 0 1373 248 15 24 chr4 20283939 20284343 -182044004 - L1M4 LINE L1 -3092 2942 2541 294 212 12 12 chr4 20284348 20284433 -182043914 - L1M4 LINE L1 -4887 1068 984 28 48 0 0 chr4 20284610 20284652 -182043695 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr4 20285282 20285303 -182043044 + AT_rich Low_complexity Low_complexity 1 21 0 531 66 0 0 chr4 20285854 20285930 -182042417 + (TCTA)n Simple_repeat Simple_repeat 1 76 0 2029 124 6 39 chr4 20286813 20287168 -182041179 - L1M3 LINE L1 -416 5752 5410 1768 167 128 34 chr4 20287180 20287397 -182040950 - MSTB1 LTR MaLR -13 419 224 2202 101 7 0 chr4 20287397 20287694 -182040653 - AluSp SINE Alu -13 300 2 1768 167 128 34 chr4 20287694 20287859 -182040488 - MSTB1 LTR MaLR -208 224 1 7437 219 16 25 chr4 20287871 20289522 -182038825 - MSTB1-int LTR MaLR -14 1637 2 1087 170 81 18 chr4 20289525 20289881 -182038466 - MSTB1 LTR MaLR -2 430 1 394 214 0 12 chr4 20289994 20290078 -182038269 - MSTB LTR MaLR -336 90 8 1001 195 9 4 chr4 20290092 20290318 -182038029 - L1M3 LINE L1 -762 5384 5158 1874 196 7 19 chr4 20290320 20290743 -182037604 + L1MB2 LINE L1 5752 6169 -2 185 250 236 57 chr4 20292948 20293160 -182035187 + L2 LINE L2 1795 2044 -1270 214 262 98 0 chr4 20293281 20293342 -182035005 + MIR SINE MIR 186 252 -10 238 344 81 38 chr4 20293647 20293833 -182034514 + L2 LINE L2 2767 2960 -354 234 169 108 72 chr4 20293919 20294002 -182034345 - MIR SINE MIR -117 145 60 1410 128 11 92 chr4 20294291 20294564 -182033783 + MSTC LTR MaLR 1 251 -177 2510 258 57 51 chr4 20294781 20295427 -182032920 - L1ME1 LINE L1 -3 6163 5522 1790 165 131 28 chr4 20295427 20295815 -182032532 + MSTA LTR MaLR 1 428 0 2510 258 57 51 chr4 20295815 20296339 -182032008 - L1ME1 LINE L1 -644 5522 4975 180 0 0 0 chr4 20296339 20296359 -182031988 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 2510 258 57 51 chr4 20296359 20296842 -182031505 - L1ME1 LINE L1 -1191 4975 4496 24 32 0 0 chr4 20296912 20296943 -182031404 + AT_rich Low_complexity Low_complexity 1 31 0 319 290 40 0 chr4 20296961 20297072 -182031275 + MLT2A2 LTR ERVL 281 461 -93 4045 199 23 10 chr4 20297172 20298400 -182029947 - L1M2 LINE L1 -694 5597 4348 * 5251 199 24 7 chr4 20298382 20299702 -182028645 - L1PB2 LINE L1 -2 6149 4795 189 0 0 0 chr4 20299702 20299723 -182028624 + (CTATT)n Simple_repeat Simple_repeat 5 25 0 5251 199 24 7 chr4 20299723 20300001 -182028346 - L1PB2 LINE L1 -1356 4795 4523 1444 278 23 23 chr4 20300393 20300832 -182027515 - L1M3b LINE L1 -5829 452 14 * 1507 269 22 22 chr4 20300814 20301398 -182026949 - L1ME1 LINE L1 -1773 4373 3790 202 244 0 0 chr4 20301833 20301878 -182026469 + (TA)n Simple_repeat Simple_repeat 2 46 0 238 378 28 21 chr4 20302194 20302337 -182026010 + L3 LINE CR1 1384 1527 -50 293 325 68 86 chr4 20303988 20304501 -182023846 - L2 LINE L2 -369 2945 2442 249 361 8 34 chr4 20304555 20304674 -182023673 + MER5A DNA MER1_type 9 124 -65 350 311 140 6 chr4 20305725 20305889 -182022458 + MIR SINE MIR 17 202 -60 1102 195 186 30 chr4 20305942 20306312 -182022035 + MSTC LTR MaLR 1 428 0 202 203 0 85 chr4 20306340 20306399 -182021948 + MIR SINE MIR 208 261 -1 2340 113 3 51 chr4 20306573 20306946 -182021401 + THE1A LTR MaLR 1 355 0 411 356 27 11 chr4 20307207 20307395 -182020952 + MIR SINE MIR 2 192 -70 29 47 0 0 chr4 20307924 20307967 -182020380 + AT_rich Low_complexity Low_complexity 1 43 0 211 292 208 21 chr4 20309830 20310022 -182018325 + MIR SINE MIR 3 230 -32 186 374 69 30 chr4 20310766 20310969 -182017378 - MIR SINE MIR -38 224 14 216 200 0 46 chr4 20311066 20311131 -182017216 + (TAA)n Simple_repeat Simple_repeat 1 62 0 231 349 94 0 chr4 20312056 20312162 -182016185 + L2 LINE L2 2934 3049 -264 568 292 0 60 chr4 20312329 20312514 -182015833 - MER58B DNA MER1_type 0 341 168 2173 116 3 0 chr4 20312518 20312812 -182015535 + AluSp SINE Alu 8 302 -11 252 316 13 0 chr4 20312898 20312977 -182015370 + L2 LINE L2 3193 3272 0 245 299 238 19 chr4 20313459 20313673 -182014674 - MIR SINE MIR 0 262 2 323 345 74 7 chr4 20313943 20314091 -182014256 - MIR3 SINE MIR -17 191 34 270 0 0 0 chr4 20314190 20314220 -182014127 + (TG)n Simple_repeat Simple_repeat 2 31 0 680 279 54 20 chr4 20314274 20314478 -182013869 - MIR SINE MIR -32 230 20 1751 114 55 4 chr4 20314977 20315249 -182013098 - L1PA13 LINE L1 -7 6156 5871 811 57 0 0 chr4 20315249 20315354 -182012993 + L1P4 LINE L1 5673 5777 -386 3504 158 45 2 chr4 20315455 20316100 -182012247 - L1MC1 LINE L1 -405 5928 5256 1990 240 55 50 chr4 20316139 20316240 -182012107 - L1MC1 LINE L1 -880 5266 5167 192 40 0 0 chr4 20316240 20316265 -182012082 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1990 240 55 50 chr4 20316265 20316289 -182012058 - L1MC1 LINE L1 -979 5167 5145 1570 133 0 40 chr4 20316289 20316537 -182011810 - AluSx SINE Alu -74 238 1 1990 240 55 50 chr4 20316537 20317192 -182011155 - L1MC1 LINE L1 -1001 5145 4481 2167 114 76 12 chr4 20319801 20320143 -182008204 - THE1B LTR MaLR 0 364 1 272 240 52 31 chr4 20321210 20321306 -182007041 + MLT1J2 LTR MaLR 68 165 -285 334 186 0 17 chr4 20321450 20321509 -182006838 + MLT1I LTR MaLR 352 409 0 1925 179 144 2 chr4 20321802 20322198 -182006149 - LTR47A LTR ERVL 0 452 1 218 372 54 23 chr4 20322606 20322735 -182005612 + L2 LINE L2 2928 3060 -212 234 128 0 0 chr4 20323304 20323343 -182005004 + (T)n Simple_repeat Simple_repeat 1 39 0 754 320 37 10 chr4 20323788 20324085 -182004262 + L1M3c LINE L1 523 827 -5836 261 292 31 42 chr4 20324052 20324148 -182004199 + L1M3c LINE L1 1290 1384 -5269 * 284 264 64 18 chr4 20324176 20324286 -182004061 + L1M3c LINE L1 1315 1429 -5234 2517 254 32 4 chr4 20324348 20325077 -182003270 + L1M3c LINE L1 1342 2090 -4573 398 301 65 0 chr4 20325161 20325284 -182003063 - MIR SINE MIR -72 190 60 248 306 0 0 chr4 20325428 20325500 -182002847 + CT-rich Low_complexity Low_complexity 1 72 0 441 265 27 138 chr4 20327312 20327372 -182000975 - MLT1J LTR MaLR -140 371 306 2068 125 24 0 chr4 20327372 20327660 -182000687 + AluSq SINE Alu 1 295 -18 441 265 27 138 chr4 20327660 20327897 -182000450 - MLT1J LTR MaLR -205 306 107 36 0 0 0 chr4 20327899 20327935 -182000412 + AT_rich Low_complexity Low_complexity 1 36 0 467 298 147 31 chr4 20328162 20328554 -181999793 - LTR33A LTR ERVL -47 476 66 331 298 25 63 chr4 20328712 20328870 -181999477 + MIR SINE MIR 49 200 -62 242 312 47 53 chr4 20328982 20329152 -181999195 - L2 LINE L2 -31 3282 3114 868 329 40 3 chr4 20330979 20331353 -181996994 + LTR16B LTR ERVL 3 390 -74 214 250 0 33 chr4 20331534 20331594 -181996753 + MIR SINE MIR 104 161 -101 206 307 27 0 chr4 20331849 20331924 -181996423 + MIR SINE MIR 186 262 0 490 227 13 39 chr4 20331978 20332132 -181996215 - MER58 DNA MER1_type -108 233 84 2052 156 84 17 chr4 20332324 20332728 -181995619 - MSTB1 LTR MaLR -1 431 1 1360 220 72 0 chr4 20332853 20333171 -181995176 + MER58B DNA MER1_type 1 341 0 447 255 37 81 chr4 20334871 20335108 -181993239 + MLT1H1 LTR MaLR 39 266 -289 230 216 108 14 chr4 20335288 20335362 -181992985 + MLT1G1 LTR MaLR 515 595 0 1236 34 0 0 chr4 20335651 20335800 -181992547 + (TTC)n Simple_repeat Simple_repeat 2 150 0 429 81 0 0 chr4 20335801 20335863 -181992484 + (TC)n Simple_repeat Simple_repeat 1 62 0 2306 91 0 0 chr4 20337576 20337883 -181990464 + AluSx SINE Alu 1 307 -5 749 303 31 18 chr4 20337910 20338138 -181990209 + MIR SINE MIR 3 233 -29 252 0 0 0 chr4 20338542 20338570 -181989777 + (T)n Simple_repeat Simple_repeat 1 28 0 23 54 0 0 chr4 20338675 20338712 -181989635 + AT_rich Low_complexity Low_complexity 1 37 0 522 303 20 10 chr4 20338767 20338965 -181989382 + MIR SINE MIR 17 216 -46 25 0 0 0 chr4 20339299 20339324 -181989023 + AT_rich Low_complexity Low_complexity 1 25 0 234 0 0 0 chr4 20339371 20339397 -181988950 + (T)n Simple_repeat Simple_repeat 1 26 0 841 256 18 9 chr4 20339581 20339808 -181988539 + MIR SINE MIR 4 232 -30 279 324 109 61 chr4 20339898 20340275 -181988072 + L2 LINE L2 2834 3228 -85 397 400 5 5 chr4 20340488 20340673 -181987674 - MIR3 SINE MIR -4 204 20 674 277 109 5 chr4 20340905 20341125 -181987222 - MIR SINE MIR -14 248 6 2266 237 79 102 chr4 20341756 20342878 -181985469 - MER52A LTR ERV1 0 1755 660 664 222 98 35 chr4 20342879 20343045 -181985302 + MLT2B1 LTR ERVL 297 480 -40 602 49 12 0 chr4 20343045 20343127 -181985220 + (TCTA)n Simple_repeat Simple_repeat 3 85 0 664 222 98 35 chr4 20343127 20343163 -181985184 + MLT2B1 LTR ERVL 480 512 -8 258 252 53 139 chr4 20343951 20344102 -181984245 - MIR3 SINE MIR -41 167 30 241 376 37 31 chr4 20345224 20345386 -181982961 - L2 LINE L2 -22 3250 3088 666 222 18 7 chr4 20345632 20345940 -181982407 - MLT1A1 LTR MaLR 0 365 1 331 240 171 8 chr4 20346179 20346308 -181982039 + MIR SINE MIR 49 198 -64 411 201 13 31 chr4 20346871 20347030 -181981317 + GA-rich Low_complexity Low_complexity 4 159 0 298 247 21 21 chr4 20347047 20347078 -181981269 + GA-rich Low_complexity Low_complexity 4 34 -62 1871 157 3 11 chr4 20347078 20347388 -181980959 + AluSx SINE Alu 1 308 0 298 247 21 21 chr4 20347388 20347448 -181980899 + GA-rich Low_complexity Low_complexity 33 96 0 30 27 0 0 chr4 20347479 20347516 -181980831 + AT_rich Low_complexity Low_complexity 1 37 0 1335 86 0 0 chr4 20347530 20347692 -181980655 - AluSq SINE Alu -151 162 1 333 253 126 41 chr4 20347934 20348203 -181980144 - HAL1 LINE L1 -105 2402 2111 240 288 105 37 chr4 20348383 20348574 -181979773 - HAL1 LINE L1 -193 2314 2111 957 359 53 33 chr4 20348841 20349984 -181978363 - ERVL LTR ERVL -435 5329 4164 253 200 0 0 chr4 20349998 20350053 -181978294 - MLT1B LTR MaLR -139 251 197 567 251 66 6 chr4 20350069 20350252 -181978095 + MLT1B LTR MaLR 195 388 -2 2827 221 24 14 chr4 20350256 20350967 -181977380 + MLT1B-int LTR MaLR 3 720 -651 278 204 72 90 chr4 20351141 20351264 -181977083 + MLT1A2 LTR MaLR 260 367 -7 730 328 81 30 chr4 20351388 20352029 -181976318 + L1MC4a LINE L1 4567 5240 -906 672 318 63 36 chr4 20352082 20352715 -181975632 + L1MC4a LINE L1 5310 5959 -1849 321 309 85 42 chr4 20352869 20353199 -181975148 + L1M4 LINE L1 3117 3460 -2686 397 312 78 56 chr4 20353473 20353832 -181974515 + MLT1I LTR MaLR 43 409 0 369 109 0 0 chr4 20354134 20354189 -181974158 + MLT1A1 LTR MaLR 1 55 -310 1803 175 24 0 chr4 20354191 20354633 -181973714 + AluJb SINE Alu 3 451 0 223 129 0 0 chr4 20354633 20354664 -181973683 + (GGGA)n Simple_repeat Simple_repeat 1 31 0 1493 189 29 3 chr4 20354666 20354979 -181973368 + MLT1A1 LTR MaLR 45 365 0 376 289 94 8 chr4 20355204 20355332 -181973015 - L2 LINE L2 -2 3311 3173 30 27 0 0 chr4 20355558 20355595 -181972752 + AT_rich Low_complexity Low_complexity 1 37 0 263 299 80 76 chr4 20355957 20356375 -181971972 - L2 LINE L2 -158 3155 2724 308 250 38 30 chr4 20356419 20356551 -181971796 + MER104 DNA Tc2 31 163 -17 398 177 16 8 chr4 20356649 20356773 -181971574 + L1M4 LINE L1 2847 2971 -3175 23 0 0 0 chr4 20356783 20356806 -181971541 + AT_rich Low_complexity Low_complexity 1 23 0 1385 102 0 0 chr4 20356895 20357101 -181971246 + L1P LINE L1 4833 5038 -1108 1806 175 75 34 chr4 20357653 20358092 -181970255 - LTR2B LTR ERV1 0 490 34 219 280 0 0 chr4 20358171 20358221 -181970126 + L2 LINE L2 3262 3311 -2 198 0 0 0 chr4 20359987 20360009 -181968338 + (CAA)n Simple_repeat Simple_repeat 3 24 0 591 195 207 6 chr4 20360430 20360599 -181967748 + Tigger3(Golem) DNA MER2_type 2835 3037 0 300 223 11 64 chr4 20360599 20360693 -181967654 - L1MC4 LINE L1 -1339 6703 6615 293 202 17 17 chr4 20360731 20360850 -181967497 + (TA)n Simple_repeat Simple_repeat 2 120 0 1302 238 122 19 chr4 20360891 20361302 -181967045 + MLT2B1 LTR ERVL 1 453 -67 276 30 0 0 chr4 20361310 20361343 -181967004 + (TG)n Simple_repeat Simple_repeat 2 34 0 256 167 59 20 chr4 20361350 20361452 -181966895 + (TTATA)n Simple_repeat Simple_repeat 3 108 0 307 50 0 0 chr4 20361452 20361492 -181966855 - HERVL LTR ERVL -5614 40 1 898 176 0 0 chr4 20361531 20361696 -181966651 + MER65A LTR ERV1 234 398 -47 2028 99 46 3 chr4 20362191 20362474 -181965873 + AluSg SINE Alu 1 295 -15 216 346 75 27 chr4 20362666 20362854 -181965493 + L2 LINE L2 1598 1794 -1520 997 213 43 3 chr4 20362883 20363212 -181965135 + L1P LINE L1 4960 5301 -845 916 245 90 97 chr4 20363351 20363465 -181964882 - L1M4 LINE L1 -1057 5089 4976 180 0 0 0 chr4 20363465 20363485 -181964862 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 916 245 90 97 chr4 20363485 20363971 -181964376 - L1M4 LINE L1 -1170 4976 4493 840 138 51 66 chr4 20364088 20364300 -181964047 + MLT2A2 LTR ERVL 298 453 0 1369 177 3 36 chr4 20364300 20364633 -181963714 - L1M2 LINE L1 -672 5619 5298 2452 266 38 2 chr4 20364868 20365654 -181962693 + L1 LINE L1 2270 3083 -3063 2075 128 24 0 chr4 20365654 20365942 -181962405 + AluSq SINE Alu 1 295 -18 385 243 0 0 chr4 20366105 20366179 -181962168 - MLT1J1 LTR MaLR -305 141 68 29 28 0 0 chr4 20366181 20366217 -181962130 + AT_rich Low_complexity Low_complexity 1 36 0 528 278 98 23 chr4 20366569 20366742 -181961605 + MIR SINE MIR 74 259 -3 2281 93 0 0 chr4 20367301 20367592 -181960755 + AluY SINE Alu 1 291 -20 410 234 73 44 chr4 20367646 20367783 -181960564 - MER5B DNA MER1_type -31 147 7 256 263 25 75 chr4 20368035 20368195 -181960152 + MER103 DNA DNA 2 153 -13 28 48 0 0 chr4 20368271 20368313 -181960034 + AT_rich Low_complexity Low_complexity 1 42 0 2198 110 0 7 chr4 20368428 20368737 -181959610 + AluSx SINE Alu 6 312 0 481 277 19 6 chr4 20369051 20369210 -181959137 + MLT1C LTR MaLR 1 161 -306 250 133 0 22 chr4 20369285 20369330 -181959017 + MLT1C LTR MaLR 226 269 -198 378 184 114 38 chr4 20369367 20369525 -181958822 - MLT2A2 LTR ERVL -1 452 283 2034 177 5 60 chr4 20369877 20370313 -181958034 + MLT2D LTR ERVL 3 414 0 2329 130 66 17 chr4 20371546 20371954 -181956393 - MSTA LTR MaLR 0 428 1 1930 129 31 34 chr4 20371954 20372335 -181956012 - MSTA-int LTR MaLR 0 1651 1272 21 0 0 0 chr4 20373217 20373238 -181955109 + AT_rich Low_complexity Low_complexity 1 21 0 297 346 41 60 chr4 20373715 20373981 -181954366 - L2 LINE L2 0 3272 3012 683 221 121 53 chr4 20374544 20374866 -181953481 + MER39 LTR ERV1 361 704 -3 3476 151 42 2 chr4 20374984 20375599 -181952748 + MER39B LTR ERV1 14 653 0 237 65 0 0 chr4 20375702 20375733 -181952614 + (CA)n Simple_repeat Simple_repeat 2 32 0 1424 115 12 16 chr4 20375736 20375988 -181952359 + LTR1 LTR ERV1 1 251 -534 411 262 36 91 chr4 20376595 20376816 -181951531 + MER58C DNA MER1_type 5 213 -2 311 274 97 32 chr4 20377106 20377230 -181951117 + L1ME3A LINE L1 6030 6161 -9 303 308 69 8 chr4 20378274 20378404 -181949943 + MIR SINE MIR 13 150 -112 512 248 215 0 chr4 20378874 20379023 -181949324 - MER5A DNA MER1_type 0 189 9 263 312 55 28 chr4 20379057 20379166 -181949181 - MER5B DNA MER1_type -41 137 26 254 254 33 160 chr4 20379407 20379448 -181948899 + L2 LINE L2 3025 3070 -202 962 207 42 42 chr4 20379448 20379665 -181948682 + MER20 DNA MER1_type 3 219 0 254 254 33 160 chr4 20379665 20379804 -181948543 + L2 LINE L2 3070 3182 -90 363 169 0 0 chr4 20379836 20379907 -181948440 + (TG)n Simple_repeat Simple_repeat 2 72 0 28 0 0 0 chr4 20379910 20379938 -181948409 + AT_rich Low_complexity Low_complexity 1 28 0 2102 296 64 58 chr4 20380870 20381255 -181947092 + L2 LINE L2 785 1166 -2148 303 28 0 0 chr4 20381255 20381291 -181947056 + (CA)n Simple_repeat Simple_repeat 1 36 0 2102 296 64 58 chr4 20381291 20381379 -181946968 + L2 LINE L2 1166 1252 -2062 809 216 66 33 chr4 20381379 20381592 -181946755 - MER58A DNA MER1_type 0 224 5 2102 296 64 58 chr4 20381592 20381673 -181946674 + L2 LINE L2 1252 1331 -1983 2579 138 2 0 chr4 20381673 20382073 -181946274 - MER57A LTR ERV1 -1 402 2 2102 296 64 58 chr4 20382073 20382798 -181945549 + L2 LINE L2 1331 2074 -1240 744 246 125 37 chr4 20382820 20383092 -181945255 + L2 LINE L2 3017 3312 -1 1761 139 89 4 chr4 20383102 20383382 -181944965 - AluSc SINE Alu -5 304 1 241 300 117 39 chr4 20383458 20383638 -181944709 - L3 LINE CR1 -8 1569 1376 388 93 0 0 chr4 20383778 20383832 -181944515 + THE1B LTR MaLR 1 54 -310 367 133 193 24 chr4 20383833 20383916 -181944431 + THE1B LTR MaLR 169 265 -99 315 345 44 34 chr4 20384034 20384240 -181944107 - MIR SINE MIR -52 210 3 605 277 98 13 chr4 20384534 20384769 -181943578 + MIR SINE MIR 3 257 -5 1913 130 53 20 chr4 20385803 20386104 -181942243 - AluSx SINE Alu -1 311 1 402 287 213 7 chr4 20386368 20386518 -181941829 + MER5A DNA MER1_type 9 189 0 813 286 69 13 chr4 20386574 20387036 -181941311 - MER113 DNA MER1_type? -33 488 1 287 200 0 100 chr4 20387112 20387192 -181941155 - MER5A DNA MER1_type -83 106 35 696 257 33 0 chr4 20387385 20387568 -181940779 - MER5A DNA MER1_type 0 189 1 249 287 46 35 chr4 20388164 20388251 -181940096 + L2 LINE L2 3222 3309 -4 21 36 0 0 chr4 20388577 20388605 -181939742 + AT_rich Low_complexity Low_complexity 1 28 0 250 59 78 0 chr4 20388699 20388750 -181939597 + A-rich Low_complexity Low_complexity 1 55 0 948 206 57 14 chr4 20388965 20389174 -181939173 - MER20 DNA MER1_type 0 219 2 219 233 0 0 chr4 20389277 20389320 -181939027 + CT-rich Low_complexity Low_complexity 4 46 0 1184 160 82 10 chr4 20389644 20389850 -181938497 + AluSq SINE Alu 1 221 -92 400 171 0 0 chr4 20389955 20390025 -181938322 + AluSq SINE Alu 226 295 -18 1261 317 88 25 chr4 20390149 20390856 -181937491 - L2 LINE L2 -411 2903 2153 22 88 0 0 chr4 20391638 20391695 -181936652 + AT_rich Low_complexity Low_complexity 1 57 0 203 200 18 36 chr4 20391808 20391884 -181936463 + GA-rich Low_complexity Low_complexity 1 74 0 297 309 66 20 chr4 20392019 20392171 -181936176 + MIR SINE MIR 30 188 -74 545 304 84 21 chr4 20392181 20392418 -181935929 - MIR SINE MIR -4 258 7 195 42 0 0 chr4 20393368 20393392 -181934955 + (TTTTC)n Simple_repeat Simple_repeat 4 27 0 353 169 101 0 chr4 20395881 20395970 -181932377 - MLT2C2 LTR ERVL -321 143 46 252 318 0 0 chr4 20395970 20396036 -181932311 + L2 LINE L2 3234 3299 -14 339 113 0 0 chr4 20396685 20396738 -181931609 + (A)n Simple_repeat Simple_repeat 1 53 0 323 308 58 8 chr4 20397325 20397445 -181930902 + MIR SINE MIR 40 165 -97 674 305 156 19 chr4 20397551 20397980 -181930367 - L2 LINE L2 -2214 1100 613 195 350 58 19 chr4 20398014 20398117 -181930230 + MIR SINE MIR 38 144 -64 2064 132 30 0 chr4 20398125 20398420 -181929927 + AluSx SINE Alu 1 304 -8 204 267 0 0 chr4 20398768 20398813 -181929534 - L2 LINE L2 -5 3267 3223 247 368 105 0 chr4 20399272 20399386 -181928961 + L2 LINE L2 3136 3261 -11 27 0 0 0 chr4 20399806 20399833 -181928514 + AT_rich Low_complexity Low_complexity 1 27 0 340 330 63 10 chr4 20399901 20400107 -181928240 - MIR SINE MIR 0 262 46 265 250 297 16 chr4 20400204 20400332 -181928015 - MIR SINE MIR -26 236 73 196 277 0 0 chr4 20400385 20400432 -181927915 + L2 LINE L2 3209 3255 -17 2214 105 0 20 chr4 20400952 20401256 -181927091 - AluSg SINE Alu -12 298 1 24 0 0 0 chr4 20401300 20401324 -181927023 + AT_rich Low_complexity Low_complexity 1 24 0 191 225 25 0 chr4 20401592 20401632 -181926715 + L2 LINE L2 3252 3292 -21 229 297 16 0 chr4 20401714 20401778 -181926569 + MIR SINE MIR 47 111 -151 187 263 0 70 chr4 20401886 20401943 -181926404 - L2 LINE L2 -15 3257 3205 207 245 0 20 chr4 20402390 20402439 -181925908 + MIR SINE MIR 97 144 -118 259 298 50 41 chr4 20402718 20402839 -181925508 - MLT1J LTR MaLR -64 447 326 433 152 0 95 chr4 20402995 20403100 -181925247 + L1M2 LINE L1 5452 5546 -754 471 318 41 82 chr4 20403195 20403560 -181924787 + L2 LINE L2 2923 3272 0 234 0 0 0 chr4 20403905 20403931 -181924416 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2008 123 40 7 chr4 20404223 20404523 -181923824 + AluSg SINE Alu 1 310 0 21 36 0 0 chr4 20405894 20405922 -181922425 + AT_rich Low_complexity Low_complexity 1 28 0 616 328 43 17 chr4 20406045 20406280 -181922067 + MIR SINE MIR 11 251 -11 217 368 0 0 chr4 20406311 20406387 -181921960 + L3 LINE CR1 1495 1570 -7 257 305 168 30 chr4 20406668 20406835 -181921512 + MIR SINE MIR 21 210 -52 868 246 24 5 chr4 20407034 20407241 -181921106 - MER58A DNA MER1_type -13 211 1 205 330 21 21 chr4 20407525 20407619 -181920728 - L2 LINE L2 -349 2964 2871 388 326 71 52 chr4 20407867 20408192 -181920155 - L2 LINE L2 -610 2704 2374 21 36 0 0 chr4 20409340 20409368 -181918979 + AT_rich Low_complexity Low_complexity 1 28 0 2038 125 0 27 chr4 20410823 20411118 -181917229 + AluSx SINE Alu 9 295 -17 387 105 40 26 chr4 20411699 20411775 -181916572 + MER116 DNA Mariner 4 80 0 198 167 0 0 chr4 20412249 20412285 -181916062 + CT-rich Low_complexity Low_complexity 2 37 0 1965 154 7 0 chr4 20412454 20412752 -181915595 + AluSx SINE Alu 1 300 -12 220 256 80 51 chr4 20413052 20413189 -181915158 + L3 LINE CR1 974 1114 -463 850 190 36 137 chr4 20413392 20413620 -181914727 - MLT1A1 LTR MaLR -38 327 148 536 115 0 0 chr4 20413620 20413698 -181914649 - MADE1 DNA Mariner -2 78 1 850 190 36 137 chr4 20413698 20413833 -181914514 - MLT1A1 LTR MaLR -217 148 1 1713 198 23 5 chr4 20414250 20414634 -181913713 - MER57A LTR ERV1 -2 401 11 200 369 138 0 chr4 20415637 20415767 -181912580 - L2 LINE L2 0 3313 3166 304 342 61 77 chr4 20415772 20416164 -181912183 - L2 LINE L2 -8 3264 2879 380 292 124 27 chr4 20416193 20416450 -181911897 - L2 LINE L2 -483 2831 2550 2033 229 21 6 chr4 20416816 20417283 -181911064 + MLT1D LTR MaLR 3 476 -29 303 28 0 0 chr4 20417283 20417319 -181911028 + (TG)n Simple_repeat Simple_repeat 1 36 0 5448 123 22 9 chr4 20417343 20418289 -181910058 - L1PA13 LINE L1 0 6163 5210 454 240 20 20 chr4 20518475 20518575 -181809772 + MER41E LTR ERV1 413 512 0 * 3829 139 28 51 chr4 20518575 20518788 -181809559 + MER4D LTR ERV1 197 414 -489 2199 123 0 7 chr4 20518788 20519097 -181809250 - AluSq SINE Alu -6 307 1 3829 139 28 51 chr4 20519097 20519607 -181808740 + MER4D LTR ERV1 414 903 0 1793 191 21 0 chr4 20519690 20520025 -181808322 - MER7A DNA MER2_type -4 342 3 189 0 0 0 chr4 20520025 20520046 -181808301 + (TG)n Simple_repeat Simple_repeat 2 22 0 2640 155 27 31 chr4 20520157 20520673 -181807674 - L1MC1 LINE L1 -186 6147 5634 216 0 0 0 chr4 20520747 20520771 -181807576 + (TTTTTG)n Simple_repeat Simple_repeat 3 26 0 2424 80 6 3 chr4 20521588 20521913 -181806434 + MLT2A2 LTR ERVL 1 326 -127 398 147 29 10 chr4 20522023 20522125 -181806222 + (TA)n Simple_repeat Simple_repeat 2 105 0 229 250 60 0 chr4 20522138 20522222 -181806125 - L1MC4 LINE L1 -1339 6703 6615 347 192 13 0 chr4 20522227 20522305 -181806042 + (TA)n Simple_repeat Simple_repeat 2 80 0 299 127 0 18 chr4 20522305 20522360 -181805987 + MLT2A1 LTR ERVL 390 443 -1 5639 132 6 7 chr4 20523000 20524087 -181804260 + L1PA14 LINE L1 5069 6154 -7 189 0 0 0 chr4 20524229 20524250 -181804097 + (CA)n Simple_repeat Simple_repeat 2 22 0 2060 244 59 19 chr4 20525514 20526042 -181802305 + MLT2B3 LTR ERVL 6 554 0 22 35 0 0 chr4 20526571 20526600 -181801747 + AT_rich Low_complexity Low_complexity 1 29 0 742 181 16 11 chr4 20527178 20527265 -181801082 + MER53 DNA DNA 5 90 -99 393 95 0 0 chr4 20527265 20527328 -181801019 + (TCTA)n Simple_repeat Simple_repeat 2 64 0 742 181 16 11 chr4 20527328 20527422 -181800925 + MER53 DNA DNA 90 187 -2 1607 200 7 10 chr4 20527548 20527843 -181800504 + AluJo SINE Alu 3 296 -16 489 189 38 0 chr4 20527854 20527986 -181800361 + GA-rich Low_complexity Low_complexity 2 138 0 25 0 0 0 chr4 20529577 20529602 -181798745 + AT_rich Low_complexity Low_complexity 1 25 0 689 111 0 0 chr4 20529734 20529833 -181798514 + AluS SINE Alu 1 99 -214 540 222 44 72 chr4 20530207 20530387 -181797960 - MER97b DNA MER1_type? -874 179 5 245 329 132 20 chr4 20530398 20530550 -181797797 - MLT1J2 LTR MaLR -12 438 270 180 179 0 0 chr4 20531441 20531480 -181796867 + (TG)n Simple_repeat Simple_repeat 2 40 0 941 211 105 8 chr4 20531518 20531939 -181796408 - MLT1D LTR MaLR -18 487 1 198 0 0 0 chr4 20531954 20531976 -181796371 + (A)n Simple_repeat Simple_repeat 1 22 0 199 192 39 19 chr4 20532316 20532368 -181795979 - MIR SINE MIR -103 159 107 1035 211 98 92 chr4 20533418 20533865 -181794482 + MER66A LTR ERV1 59 467 -11 227 298 30 23 chr4 20534109 20534240 -181794107 + L1ME LINE L1 5608 5739 -382 2083 115 30 7 chr4 20534258 20534563 -181793784 - AluSx SINE Alu 0 312 1 28 29 0 0 chr4 20534710 20534745 -181793602 + AT_rich Low_complexity Low_complexity 1 35 0 438 319 136 8 chr4 20535143 20535378 -181792969 + MLT1K LTR MaLR 7 271 -317 1275 233 31 85 chr4 20535549 20536089 -181792258 - MER21B LTR ERV1 -56 807 384 236 247 59 71 chr4 20536097 20536182 -181792165 - MER21B LTR ERV1 -675 188 105 5229 111 42 1 chr4 20536212 20536990 -181791357 - L1PA13 LINE L1 -3 6160 5351 436 179 26 0 chr4 20536980 20537058 -181791289 - L1P LINE L1 -2457 3689 3610 * 476 311 70 18 chr4 20537381 20537609 -181790738 - L2 LINE L2 -337 2977 2738 351 0 0 0 chr4 20537769 20537808 -181790539 + (CA)n Simple_repeat Simple_repeat 2 40 0 444 286 8 8 chr4 20537855 20537974 -181790373 + L2 LINE L2 3190 3308 -5 469 341 16 6 chr4 20538749 20538931 -181789416 - MIR3 SINE MIR -13 195 12 334 269 41 112 chr4 20539288 20539556 -181788791 + MIR SINE MIR 13 261 -1 240 324 59 47 chr4 20539669 20539839 -181788508 + MIR SINE MIR 59 230 -32 2218 49 59 0 chr4 20540368 20540655 -181787692 + AluY SINE Alu 1 304 -7 1006 198 0 34 chr4 20542633 20542840 -181785507 - MER3 DNA MER1_type -7 202 3 221 392 30 6 chr4 20543605 20543771 -181784576 - MIR SINE MIR -3 259 90 1421 229 44 7 chr4 20544274 20544729 -181783618 - L1M4 LINE L1 -2884 3262 2791 4966 213 39 71 chr4 20544989 20546943 -181781404 + L1MB7 LINE L1 3587 5459 -719 2623 225 8 8 chr4 20546952 20547600 -181780747 + L1MB7 LINE L1 5518 6165 -19 497 299 32 6 chr4 20549119 20549276 -181779071 + MER97b DNA MER1_type? 19 179 -874 345 254 9 70 chr4 20549366 20549480 -181778867 + L2 LINE L2 3204 3310 -3 198 319 167 29 chr4 20549887 20550025 -181778322 - MIR SINE MIR -46 216 60 336 143 18 0 chr4 20550085 20550141 -181778206 + Alu SINE Alu 235 291 -11 332 268 24 16 chr4 20550271 20550394 -181777953 + (TA)n Simple_repeat Simple_repeat 2 125 0 495 73 0 0 chr4 20551601 20551669 -181776678 + (CA)n Simple_repeat Simple_repeat 1 68 0 255 329 0 13 chr4 20551933 20552009 -181776338 - MLT1K LTR MaLR -324 264 190 726 308 75 39 chr4 20553237 20553649 -181774698 + MLT1J2 LTR MaLR 2 428 -22 206 233 0 0 chr4 20554096 20554139 -181774208 + (CATTT)n Simple_repeat Simple_repeat 2 44 0 484 286 79 26 chr4 20554139 20554366 -181773981 - L1MD1 LINE L1 -397 5845 5607 * 4179 196 36 24 chr4 20554365 20555303 -181773044 - L1MA10 LINE L1 -103 6231 5282 4526 219 16 20 chr4 20555309 20556419 -181771928 + L1 LINE L1 4125 5232 -914 2569 154 9 2 chr4 20556419 20556841 -181771506 - MSTA LTR MaLR 0 428 4 4526 219 16 20 chr4 20556841 20556887 -181771460 + L1 LINE L1 5232 5277 -869 362 202 75 11 chr4 20556938 20557032 -181771315 - L1MC1 LINE L1 0 6333 6234 9158 196 17 59 chr4 20557138 20557624 -181770723 - L1PA13 LINE L1 -2523 4274 3769 2153 105 7 0 chr4 20557624 20557918 -181770429 - AluSg SINE Alu -14 296 1 9158 196 17 59 chr4 20557918 20558259 -181770088 - L1PA13 LINE L1 -3028 3769 3415 489 37 0 98 chr4 20558259 20558311 -181770036 - MADE1 DNA Mariner -1 79 36 2189 121 0 3 chr4 20558311 20558617 -181769730 + AluSq SINE Alu 1 305 -8 489 37 0 98 chr4 20558617 20558646 -181769701 - MADE1 DNA Mariner -44 36 6 9158 196 17 59 chr4 20558646 20560766 -181767581 - L1PA13 LINE L1 -3382 3415 1396 374 298 90 22 chr4 20560769 20560947 -181767400 - L1PA13 LINE L1 -5529 1258 1069 361 247 24 102 chr4 20560987 20561153 -181767194 - MER21B LTR ERV1 -710 153 1 202 322 44 11 chr4 20563581 20563671 -181764676 + MIR3 SINE MIR 106 198 -10 675 270 34 39 chr4 20563774 20564007 -181764340 - MIR SINE MIR -30 232 1 2069 88 3 61 chr4 20564748 20565076 -181763271 + AluSg SINE Alu 1 309 -1 282 232 0 0 chr4 20565167 20565223 -181763124 + MIR SINE MIR 92 147 -115 501 195 0 0 chr4 20565848 20565925 -181762422 + MER2 DNA MER2_type 269 345 0 28 0 0 0 chr4 20566295 20566323 -181762024 + AT_rich Low_complexity Low_complexity 1 28 0 305 206 0 128 chr4 20566370 20566472 -181761875 + L1MC4 LINE L1 6614 6702 -1340 30 69 0 0 chr4 20566533 20566591 -181761756 + AT_rich Low_complexity Low_complexity 1 58 0 205 352 14 14 chr4 20566626 20566697 -181761650 + L2 LINE L2 3193 3263 -9 1804 97 8 0 chr4 20566702 20566960 -181761387 - L1PA13 LINE L1 -9 6154 5895 35 24 0 0 chr4 20567063 20567105 -181761242 + AT_rich Low_complexity Low_complexity 1 42 0 3868 87 9 9 chr4 20567140 20567702 -181760645 - L1MA1 LINE L1 0 6302 5741 200 293 10 101 chr4 20567797 20567896 -181760451 + L3 LINE CR1 13 102 -1475 507 253 19 136 chr4 20567929 20568113 -181760234 - L2 LINE L2 0 3313 3166 1904 145 23 54 chr4 20568113 20568500 -181759847 + THE1C LTR MaLR 1 375 0 507 253 19 136 chr4 20568500 20568572 -181759775 - L2 LINE L2 -147 3166 3087 481 299 7 21 chr4 20568929 20569073 -181759274 + MER58B DNA MER1_type 174 315 -26 369 62 0 0 chr4 20569080 20569128 -181759219 + (CA)n Simple_repeat Simple_repeat 1 48 0 504 261 103 69 chr4 20569447 20569837 -181758510 + MLT1L LTR MaLR 194 596 -19 24 32 0 0 chr4 20570077 20570108 -181758239 + AT_rich Low_complexity Low_complexity 1 31 0 2213 119 0 0 chr4 20570635 20570938 -181757409 + AluSq SINE Alu 1 303 -10 277 361 94 11 chr4 20571191 20571371 -181756976 + MIR SINE MIR 32 226 -36 337 217 14 0 chr4 20572063 20572132 -181756215 + L2 LINE L2 3244 3313 0 6585 11 0 3 chr4 20572349 20573098 -181755249 + L1HS LINE L1 5409 6155 0 270 81 0 0 chr4 20573101 20573138 -181755209 + (A)n Simple_repeat Simple_repeat 1 37 0 304 379 35 6 chr4 20573543 20573717 -181754630 + MIR SINE MIR 36 214 -48 540 292 33 53 chr4 20573759 20574060 -181754287 - MLT1L LTR MaLR 0 615 321 2097 79 4 0 chr4 20574406 20574671 -181753676 - AluSg SINE Alu -32 278 13 225 0 0 0 chr4 20576837 20576862 -181751485 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 21 36 0 0 chr4 20577114 20577142 -181751205 + AT_rich Low_complexity Low_complexity 1 28 0 1026 117 17 22 chr4 20577247 20577426 -181750921 + L1PA11 LINE L1 5995 6172 -2 25 0 0 0 chr4 20577948 20577973 -181750374 + AT_rich Low_complexity Low_complexity 1 25 0 2130 92 16 0 chr4 20578125 20578431 -181749916 + L1PA13 LINE L1 5850 6160 -3 21 0 0 0 chr4 20578433 20578454 -181749893 + AT_rich Low_complexity Low_complexity 1 21 0 198 0 0 0 chr4 20578496 20578518 -181749829 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 377 254 76 17 chr4 20579829 20579947 -181748400 + MER20B DNA MER1_type 65 189 -594 225 108 0 0 chr4 20580088 20580125 -181748222 + (CA)n Simple_repeat Simple_repeat 2 38 0 834 261 11 70 chr4 20581947 20582304 -181746043 - MER58B DNA MER1_type 0 341 6 393 216 57 0 chr4 20582316 20582404 -181745943 + Charlie5 DNA MER1_type 13 105 -2507 1434 202 29 13 chr4 20582418 20582794 -181745553 + Charlie5 DNA MER1_type 2242 2623 0 821 310 64 42 chr4 20582796 20583157 -181745190 + MLT1J2 LTR MaLR 49 417 -33 1340 306 66 44 chr4 20583204 20584023 -181744324 + L1MC4a LINE L1 44 880 -5516 1509 247 90 66 chr4 20584023 20584868 -181743479 + L1MC4a LINE L1 2428 3292 -2923 897 234 40 45 chr4 20584854 20585208 -181743139 + L1MC4a LINE L1 5082 5433 -782 * 529 299 69 35 chr4 20585351 20585582 -181742765 + L1ME1 LINE L1 5909 6147 -19 427 148 0 0 chr4 20585593 20585654 -181742693 - 5S rRNA rRNA -29 92 32 6552 77 17 2 chr4 20585655 20586734 -181741613 + L1PA7 LINE L1 5067 6154 0 23 33 0 0 chr4 20587299 20587329 -181741018 + AT_rich Low_complexity Low_complexity 1 30 0 681 393 33 24 chr4 20588367 20588914 -181739433 + MLT1K LTR MaLR 37 588 0 227 266 63 13 chr4 20590200 20590279 -181738068 + MIR SINE MIR 82 164 -98 347 338 82 21 chr4 20590481 20590821 -181737526 + L1MC4a LINE L1 5580 5940 -1937 207 336 76 25 chr4 20591984 20592103 -181736244 - MIR3 SINE MIR -1 207 83 537 183 9 0 chr4 20592690 20592805 -181735542 - L1MA4 LINE L1 -139 6161 6046 532 252 0 0 chr4 20592806 20592941 -181735406 + L1MA4 LINE L1 6155 6289 -11 209 348 101 14 chr4 20592955 20593093 -181735254 + L3 LINE CR1 829 978 -599 40 21 0 0 chr4 20593154 20593201 -181735146 + AT_rich Low_complexity Low_complexity 1 47 0 22 0 0 0 chr4 20593658 20593680 -181734667 + AT_rich Low_complexity Low_complexity 1 22 0 234 309 47 50 chr4 20593802 20593976 -181734371 - MIR SINE MIR -67 141 20 292 319 29 30 chr4 20594146 20594296 -181734051 + MIR SINE MIR 16 157 -65 228 237 68 0 chr4 20595818 20595877 -181732470 + L2 LINE L2 3209 3271 -1 224 368 77 7 chr4 20596160 20596315 -181732032 + MIR3 SINE MIR 20 185 -23 197 231 0 183 chr4 20596374 20596478 -181731869 + L2 LINE L2 3229 3313 0 1895 182 50 40 chr4 20596939 20597418 -181730929 - LTR2B LTR ERV1 0 490 7 1572 218 77 48 chr4 20598308 20598826 -181729521 + LTR55 LTR ERV 6 538 -10 286 333 16 8 chr4 20600033 20600159 -181728188 - MIR SINE MIR -16 246 120 300 269 54 11 chr4 20600326 20600419 -181727928 + L1MC4 LINE L1 6616 6712 -1330 256 187 32 5 chr4 20601546 20601621 -181726726 + AluSx SINE Alu 1 45 -263 5764 66 0 4 chr4 20601621 20602351 -181725996 - LTR17 LTR ERV1 -53 727 1 1686 108 29 0 chr4 20602351 20602591 -181725756 + AluSx SINE Alu 42 288 -24 377 322 93 37 chr4 20602717 20602931 -181725416 + LTR33 LTR ERVL 59 284 -237 651 309 77 26 chr4 20604529 20604918 -181723429 - MLT1I LTR MaLR 0 409 1 21 0 0 0 chr4 20604994 20605015 -181723332 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr4 20605442 20605466 -181722881 + AT_rich Low_complexity Low_complexity 1 24 0 25 31 0 0 chr4 20606126 20606158 -181722189 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr4 20606360 20606382 -181721965 + AT_rich Low_complexity Low_complexity 1 22 0 363 311 57 0 chr4 20606388 20606510 -181721837 - MIR SINE MIR -22 240 112 6351 86 6 9 chr4 20606520 20608298 -181720049 + L1PA10 LINE L1 4376 6156 -12 25 31 0 0 chr4 20608630 20608662 -181719685 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr4 20608951 20608973 -181719374 + AT_rich Low_complexity Low_complexity 1 22 0 442 198 0 0 chr4 20609211 20609292 -181719055 + Charlie7 DNA MER1_type 1670 1750 -862 349 281 96 7 chr4 20609753 20609888 -181718459 + MIR SINE MIR 98 244 -18 208 89 133 0 chr4 20610351 20610396 -181717951 + (TGAA)n Simple_repeat Simple_repeat 1 51 0 227 209 0 0 chr4 20611193 20611236 -181717111 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 531 102 0 0 chr4 20611442 20611530 -181716817 + (CA)n Simple_repeat Simple_repeat 1 88 0 256 138 0 103 chr4 20612144 20612202 -181716145 + L2 LINE L2 3262 3313 0 613 241 86 0 chr4 20612316 20612478 -181715869 + MIR SINE MIR 3 178 -84 220 26 0 51 chr4 20612541 20612580 -181715767 + (TTA)n Simple_repeat Simple_repeat 3 39 0 668 0 0 0 chr4 20612580 20612655 -181715692 - L1PA4 LINE L1 -18 6137 6063 2095 123 150 5 chr4 20613209 20613583 -181714764 - MSTA LTR MaLR 0 428 1 6706 127 16 3 chr4 20613661 20614769 -181713578 + L1MA3 LINE L1 5175 6297 -8 1781 204 44 3 chr4 20615594 20615961 -181712386 - MLT1B LTR MaLR -8 382 1 256 336 15 0 chr4 20618140 20618277 -181710070 + (TA)n Simple_repeat Simple_repeat 2 140 0 23 0 0 0 chr4 20619172 20619195 -181709152 + AT_rich Low_complexity Low_complexity 1 23 0 195 100 0 0 chr4 20619400 20619430 -181708917 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 21 0 0 0 chr4 20619988 20620009 -181708338 + AT_rich Low_complexity Low_complexity 1 21 0 2248 146 8 6 chr4 20620065 20620428 -181707919 + THE1B LTR MaLR 1 364 0 444 299 87 43 chr4 20620790 20621345 -181707002 - L1ME4a LINE L1 -18 6103 5525 1595 151 107 20 chr4 20621524 20621869 -181706478 + THE1C LTR MaLR 1 375 0 351 324 108 32 chr4 20622143 20622458 -181705889 - L1ME4a LINE L1 -2155 3991 3653 873 276 14 5 chr4 20622538 20622759 -181705588 + L2 LINE L2 2558 2780 -534 213 281 0 0 chr4 20623083 20623140 -181705207 + (TATG)n Simple_repeat Simple_repeat 4 60 0 21 57 0 0 chr4 20623665 20623700 -181704647 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr4 20623996 20624019 -181704328 + AT_rich Low_complexity Low_complexity 1 23 0 1288 80 0 114 chr4 20624326 20624563 -181703784 - L1MA1 LINE L1 -4 6298 6089 2058 96 3 17 chr4 20625545 20625846 -181702501 + AluSp SINE Alu 1 297 -16 192 40 0 0 chr4 20625846 20625871 -181702476 + (CA)n Simple_repeat Simple_repeat 2 26 0 230 102 34 17 chr4 20625895 20625954 -181702393 - LTR66 LTR ERVL -159 451 392 377 385 39 0 chr4 20626404 20626560 -181701787 + MIR SINE MIR 12 173 -89 2375 78 7 0 chr4 20626608 20626914 -181701433 + AluSg SINE Alu 1 308 -2 216 292 0 0 chr4 20626952 20627000 -181701347 - L2 LINE L2 -40 3232 3185 282 248 20 20 chr4 20627024 20627125 -181701222 - L1MB7 LINE L1 -11 6173 6073 4613 181 31 31 chr4 20627144 20627540 -181700807 - L1MA10 LINE L1 -10 6324 5929 284 47 0 23 chr4 20627540 20627583 -181700764 + (TTA)n Simple_repeat Simple_repeat 2 43 0 2055 120 0 7 chr4 20627585 20627869 -181700478 - AluSx SINE Alu -30 282 1 4613 181 31 31 chr4 20627869 20628516 -181699831 - L1MA10 LINE L1 -405 5929 5278 367 343 44 36 chr4 20629256 20629504 -181698843 - MIR SINE MIR 0 262 13 195 100 0 0 chr4 20629637 20629667 -181698680 + (CAAA)n Simple_repeat Simple_repeat 4 33 0 710 58 101 6 chr4 20629999 20630546 -181697801 + (TA)n Simple_repeat Simple_repeat 1 599 0 1937 85 0 0 chr4 20630546 20630793 -181697554 - AluY SINE Alu -24 287 41 848 299 67 26 chr4 20631066 20631601 -181696746 - L1ME4a LINE L1 -237 5884 5328 1127 196 0 10 chr4 20632257 20632456 -181695891 + MER4D LTR ERV1 1 197 -706 2859 150 11 0 chr4 20632539 20632985 -181695362 + MER41E LTR ERV1 1 451 -61 21 0 0 0 chr4 20633593 20633614 -181694733 + AT_rich Low_complexity Low_complexity 1 21 0 182 342 13 26 chr4 20633630 20633706 -181694641 + MIR SINE MIR 168 242 -20 394 298 7 7 chr4 20634723 20634864 -181693483 + MARNA DNA Mariner 241 381 -205 201 226 97 0 chr4 20635312 20635374 -181692973 - MIR SINE MIR -114 148 81 192 143 0 0 chr4 20635583 20635625 -181692722 + (GA)n Simple_repeat Simple_repeat 2 43 0 512 192 33 0 chr4 20636114 20636234 -181692113 - L1MA6 LINE L1 -3 7716 7593 4113 181 86 11 chr4 20636249 20637800 -181690547 - L1MA6 LINE L1 -326 7393 5728 3591 239 47 39 chr4 20637803 20638269 -181690078 - L1MA6 LINE L1 -2885 4680 4219 2229 78 4 0 chr4 20638269 20638599 -181689748 + AluY SINE Alu 1 331 0 3591 239 47 39 chr4 20638599 20639604 -181688743 - L1MA6 LINE L1 -3346 4219 3177 1602 145 69 4 chr4 20639604 20639866 -181688481 - AluSq SINE Alu -2 311 33 3591 239 47 39 chr4 20639866 20640624 -181687723 - L1MA6 LINE L1 -4388 3177 2427 186 43 0 0 chr4 20640660 20640683 -181687664 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 828 204 80 32 chr4 20641011 20641324 -181687023 - L1M2c LINE L1 -4865 1924 1597 2750 79 3 0 chr4 20641577 20641931 -181686416 + THE1A LTR MaLR 1 355 0 10410 101 62 1 chr4 20641931 20643421 -181684926 + THE1A-int LTR MaLR 1 1580 0 2711 78 3 8 chr4 20643421 20643778 -181684569 + THE1A LTR MaLR 1 355 0 1252 314 73 34 chr4 20644027 20644641 -181683706 - L1M2c LINE L1 -6132 657 20 23 0 0 0 chr4 20644852 20644875 -181683472 + AT_rich Low_complexity Low_complexity 1 23 0 1747 179 0 29 chr4 20645267 20645575 -181682772 - AluJb SINE Alu -13 299 1 276 354 15 8 chr4 20646300 20646430 -181681917 - MIR3 SINE MIR -1 207 77 2638 108 3 16 chr4 20647197 20647399 -181680948 + THE1B LTR MaLR 1 197 -167 6473 112 41 17 chr4 20647399 20648445 -181679902 - MER11C LTR ERVK 0 1071 1 2638 108 3 16 chr4 20648445 20648611 -181679736 + THE1B LTR MaLR 197 364 0 502 292 173 7 chr4 20648759 20649093 -181679254 + MLT1G1 LTR MaLR 176 594 -1 268 292 33 58 chr4 20649480 20649600 -181678747 + MLT1H1 LTR MaLR 32 148 -407 1114 252 78 20 chr4 20649639 20649913 -181678434 - MLT1A1 LTR MaLR 0 365 65 1116 206 93 44 chr4 20649913 20650234 -181678113 + MER44D DNA MER2_type 1 607 -2 1114 252 78 20 chr4 20650234 20650304 -181678043 - MLT1A1 LTR MaLR -300 65 1 276 285 106 22 chr4 20650425 20650604 -181677743 + MLT1H1 LTR MaLR 362 555 0 5323 142 58 45 chr4 20650893 20651437 -181676910 + Tigger3b DNA MER2_type 142 677 -2351 1715 170 10 3 chr4 20651437 20651731 -181676616 + AluJb SINE Alu 1 296 -16 5323 142 58 45 chr4 20651731 20652262 -181676085 + Tigger3b DNA MER2_type 677 1231 0 253 305 24 0 chr4 20652912 20652994 -181675353 - L2 LINE L2 -5 3308 3225 198 103 0 0 chr4 20653017 20653046 -181675301 + (T)n Simple_repeat Simple_repeat 1 29 0 344 355 41 17 chr4 20654426 20654598 -181673749 + MIR SINE MIR 6 181 -81 192 163 143 41 chr4 20655278 20655327 -181673020 - MIR SINE MIR -89 173 120 305 354 0 0 chr4 20655881 20656025 -181672322 + L1ME3A LINE L1 6027 6170 0 266 216 155 0 chr4 20656301 20656398 -181671949 + MLT1L LTR MaLR 439 550 -65 1514 164 14 0 chr4 20656422 20656703 -181671644 - L1MA5 LINE L1 -6 6294 6010 401 159 28 19 chr4 20656727 20656834 -181671513 + CT-rich Low_complexity Low_complexity 2 109 0 697 271 201 23 chr4 20657395 20657970 -181670377 + L2 LINE L2 2401 3073 -240 382 289 72 48 chr4 20658009 20658258 -181670089 + L2 LINE L2 2985 3239 -74 2216 88 7 39 chr4 20658278 20658585 -181669762 + AluSg SINE Alu 1 297 -13 227 255 0 0 chr4 20659269 20659320 -181669027 + (CA)n Simple_repeat Simple_repeat 1 51 0 192 349 75 0 chr4 20659974 20660080 -181668267 - MIR SINE MIR -34 228 115 266 316 76 0 chr4 20660815 20660894 -181667453 - L2 LINE L2 -52 3220 3136 409 295 91 54 chr4 20661767 20662008 -181666339 + MIR SINE MIR 13 262 0 5071 181 26 8 chr4 20662638 20664342 -181664005 + L1PB4 LINE L1 4415 6152 -4 286 274 80 35 chr4 20665193 20665306 -181663041 - MIR SINE MIR -41 221 104 1749 181 62 41 chr4 20665326 20665745 -181662602 + MLT2C2 LTR ERVL 5 432 -32 1898 152 3 14 chr4 20666500 20666797 -181661550 - AluJb SINE Alu -18 294 1 235 289 10 10 chr4 20666848 20666945 -181661402 + MLT1J1 LTR MaLR 346 442 -4 1650 97 0 4 chr4 20667518 20667744 -181660603 - AluY SINE Alu -5 306 82 2312 201 10 0 chr4 20667785 20668192 -181660155 + MSTB LTR MaLR 3 413 -13 1995 130 20 0 chr4 20669030 20669330 -181659017 + AluSx SINE Alu 7 312 0 29 47 0 0 chr4 20669667 20669710 -181658637 + AT_rich Low_complexity Low_complexity 1 43 0 31 44 0 0 chr4 20670193 20670238 -181658109 + AT_rich Low_complexity Low_complexity 1 45 0 229 288 30 0 chr4 20670554 20670620 -181657727 - MIR SINE MIR -38 224 157 1715 251 31 46 chr4 20670629 20671091 -181657256 - MLT1E LTR MaLR -3 590 134 2504 108 78 8 chr4 20671091 20671491 -181656856 - MSTA LTR MaLR 0 428 1 1715 251 31 46 chr4 20671491 20671507 -181656840 - MLT1E LTR MaLR -459 134 119 393 304 9 0 chr4 20671508 20671620 -181656727 - MLT1E LTR MaLR -430 163 51 573 308 7 0 chr4 20671656 20671802 -181656545 - MIR SINE MIR -106 156 10 273 346 48 86 chr4 20671853 20672168 -181656179 - L2 LINE L2 -17 3255 2953 261 364 23 0 chr4 20672424 20672512 -181655835 - L2 LINE L2 -652 2662 2573 1943 162 126 5 chr4 20672689 20673071 -181655276 - MSTA LTR MaLR 0 428 1 4599 163 28 9 chr4 20673071 20673862 -181654485 - MSTA-int LTR MaLR 0 1580 775 262 161 128 0 chr4 20673864 20673926 -181654421 - AluS SINE Alu -246 57 1 1688 180 131 13 chr4 20673935 20674318 -181654029 - MSTA LTR MaLR 0 428 1 6754 61 5 6 chr4 20674517 20676193 -181652154 + L1PA7 LINE L1 4493 6167 0 1339 244 148 23 chr4 20676658 20677097 -181651250 + MLT1D LTR MaLR 12 505 0 387 355 65 18 chr4 20677115 20677284 -181651063 - MER91A DNA MER1_type -19 177 1 21 36 0 0 chr4 20677783 20677811 -181650536 + AT_rich Low_complexity Low_complexity 1 28 0 208 272 256 24 chr4 20678363 20678488 -181649859 + MIR SINE MIR 107 260 -2 215 374 10 10 chr4 20678721 20678820 -181649527 + MIR SINE MIR 54 152 -110 189 321 90 8 chr4 20678857 20678991 -181649356 - MIR SINE MIR 0 262 118 296 318 24 38 chr4 20679537 20679702 -181648645 + MIR SINE MIR 27 187 -62 315 287 23 23 chr4 20679983 20680070 -181648277 - L2 LINE L2 -16 3256 3170 26 0 0 0 chr4 20680415 20680441 -181647906 + AT_rich Low_complexity Low_complexity 1 26 0 2019 106 0 7 chr4 20680499 20680954 -181647393 + AluSc SINE Alu 1 453 0 26 50 0 0 chr4 20681356 20681396 -181646951 + AT_rich Low_complexity Low_complexity 1 40 0 13308 195 16 12 chr4 20681397 20686123 -181642224 - L1PA14 LINE L1 -2 7597 2868 759 103 9 0 chr4 20686128 20686235 -181642112 - AluSx SINE Alu -11 299 192 1024 101 0 7 chr4 20686236 20686375 -181641972 - AluSx SINE Alu -171 141 4 3456 118 77 2 chr4 20686379 20686936 -181641411 - L1PA14 LINE L1 -4725 2856 2258 351 261 65 11 chr4 20687424 20687516 -181640831 + MIR SINE MIR 89 185 -77 410 304 47 26 chr4 20687751 20687942 -181640405 + L2 LINE L2 3117 3311 -2 1187 199 109 55 chr4 20689232 20689689 -181638658 - LTR54B LTR ERV1 -16 482 1 27 49 0 0 chr4 20689837 20689878 -181638469 + AT_rich Low_complexity Low_complexity 1 41 0 2731 13 0 0 chr4 20690332 20690635 -181637712 + AluYa5 SINE Alu 1 303 -8 203 378 77 35 chr4 20691160 20691303 -181637044 - L2 LINE L2 -2 3270 3122 820 268 63 26 chr4 20694362 20694713 -181633634 + L1ME2 LINE L1 5757 6120 -44 507 240 12 18 chr4 20694746 20694917 -181633430 + L1MC4a LINE L1 6345 6514 -1294 524 150 0 10 chr4 20694922 20695022 -181633325 + (CA)n Simple_repeat Simple_repeat 2 100 0 255 267 85 34 chr4 20695039 20695176 -181633171 + L1MC4a LINE L1 6537 6593 -1215 21 36 0 0 chr4 20695177 20695205 -181633142 + AT_rich Low_complexity Low_complexity 1 28 0 1975 261 196 15 chr4 20695276 20696192 -181632155 + L1MC4 LINE L1 6658 7739 -303 652 292 12 0 chr4 20696217 20696385 -181631962 - MER58A DNA MER1_type -13 211 42 2555 248 105 51 chr4 20696419 20696978 -181631369 - L1MCb LINE L1 -4085 2479 1952 1811 188 17 12 chr4 20696978 20697323 -181631024 - MER7A DNA MER2_type 0 346 2 2555 248 105 51 chr4 20697323 20698939 -181629408 - L1MCb LINE L1 -4612 1952 129 180 316 95 11 chr4 20698965 20699060 -181629287 + L3 LINE CR1 1461 1563 -14 226 323 0 11 chr4 20699462 20699555 -181628792 + T-rich Low_complexity Low_complexity 2 93 0 2041 131 60 20 chr4 20699561 20699911 -181628436 + THE1B LTR MaLR 1 364 0 205 296 29 93 chr4 20700777 20700949 -181627398 - L2 LINE L2 -829 2485 2325 926 100 87 0 chr4 20701085 20701235 -181627112 - L1P LINE L1 -3113 3033 2871 326 109 0 0 chr4 20701256 20701302 -181627045 + L1P LINE L1 2819 2864 -3282 22 0 0 0 chr4 20701392 20701414 -181626933 + AT_rich Low_complexity Low_complexity 1 22 0 222 338 150 10 chr4 20702035 20702242 -181626105 + L2 LINE L2 1710 1945 -1369 235 319 116 65 chr4 20702271 20702487 -181625860 + MLT1L LTR MaLR 18 244 -371 2627 149 12 14 chr4 20702670 20703099 -181625248 + MSTA LTR MaLR 1 428 0 202 436 39 8 chr4 20703289 20703546 -181624801 + L2 LINE L2 2854 3118 -154 325 341 29 29 chr4 20703996 20704204 -181624143 + L1M4 LINE L1 4626 4833 -1313 275 246 0 0 chr4 20704210 20704275 -181624072 + (TA)n Simple_repeat Simple_repeat 1 65 0 29 28 0 0 chr4 20704380 20704416 -181623931 + AT_rich Low_complexity Low_complexity 1 36 0 420 297 78 60 chr4 20704718 20704950 -181623397 + MIR SINE MIR 5 240 -22 2287 81 7 3 chr4 20705387 20705682 -181622665 + AluY SINE Alu 1 296 -15 1745 161 73 14 chr4 20705800 20706154 -181622193 + THE1C LTR MaLR 1 375 0 21 71 0 0 chr4 20706514 20706556 -181621791 + AT_rich Low_complexity Low_complexity 1 42 0 25 65 0 0 chr4 20707055 20707101 -181621246 + AT_rich Low_complexity Low_complexity 1 46 0 1605 296 57 29 chr4 20708712 20709273 -181619074 + MLT1E LTR MaLR 3 579 -14 288 364 23 23 chr4 20709642 20709771 -181618576 + Charlie8 DNA MER1_type 152 280 -2137 299 277 158 103 chr4 20710241 20710660 -181617687 - MLT1H LTR MaLR -107 442 1 361 316 21 0 chr4 20711974 20712069 -181616278 - MIR SINE MIR -62 146 50 23 54 0 0 chr4 20712258 20712295 -181616052 + AT_rich Low_complexity Low_complexity 1 37 0 264 268 24 12 chr4 20712762 20712844 -181615503 + L1MC4 LINE L1 7325 7407 -635 2281 152 8 0 chr4 20712844 20713205 -181615142 - THE1B LTR MaLR 0 364 1 246 62 0 0 chr4 20713354 20713386 -181614961 + (TA)n Simple_repeat Simple_repeat 2 33 0 413 289 26 26 chr4 20713386 20713576 -181614771 + L1MC4 LINE L1 7698 7887 -155 648 260 35 111 chr4 20713775 20713880 -181614467 + L1MC5 LINE L1 6617 6728 -1233 2108 125 0 0 chr4 20713880 20714177 -181614170 - AluSc SINE Alu -7 302 6 648 260 35 111 chr4 20714177 20714529 -181613818 + L1MC5 LINE L1 6728 7039 -922 4801 232 66 38 chr4 20714533 20717520 -181610827 + L1MD1 LINE L1 3175 6242 0 1615 187 21 9 chr4 20717523 20717849 -181610498 + L1MC1 LINE L1 6004 6333 0 242 368 17 8 chr4 20718320 20718437 -181609910 - L2 LINE L2 -16 3256 3139 313 293 144 29 chr4 20719391 20719565 -181608782 - MLT1I LTR MaLR -123 286 93 10676 162 24 13 chr4 20720001 20721911 -181606436 + Tigger1 DNA MER2_type 1 1932 -486 367 133 0 0 chr4 20721945 20722005 -181606342 + Tigger1 DNA MER2_type 2113 2172 -246 587 163 10 0 chr4 20722005 20722103 -181606244 + Tigger1 DNA MER2_type 2320 2418 0 3884 258 70 37 chr4 20722393 20722903 -181605444 + L1MB8 LINE L1 3497 3989 -2189 1918 114 34 20 chr4 20722903 20723201 -181605146 - AluSx SINE Alu 0 312 11 3884 258 70 37 chr4 20723201 20725288 -181603059 + L1MB8 LINE L1 3989 6178 0 255 304 101 40 chr4 20725420 20725568 -181602779 - MIR3 SINE MIR -12 196 40 225 397 26 17 chr4 20726673 20726789 -181601558 + MIR SINE MIR 32 148 -114 1906 127 3 48 chr4 20727018 20727333 -181601014 + AluSc SINE Alu 1 301 -8 536 341 45 8 chr4 20727503 20727749 -181600598 - MIR SINE MIR -1 261 7 21 0 0 0 chr4 20730228 20730249 -181598098 + AT_rich Low_complexity Low_complexity 1 21 0 191 302 47 66 chr4 20730443 20730549 -181597798 - MER5B DNA MER1_type -72 106 3 1904 98 26 4 chr4 20730671 20730935 -181597412 + AluSp SINE Alu 14 283 -30 681 288 75 12 chr4 20731081 20731321 -181597026 - MIR SINE MIR -6 256 2 2202 168 71 24 chr4 20731518 20731988 -181596359 + MLT2A2 LTR ERVL 1 447 -107 405 0 0 0 chr4 20731988 20732033 -181596314 + (TG)n Simple_repeat Simple_repeat 2 46 0 279 0 0 0 chr4 20732032 20732063 -181596284 + (TA)n Simple_repeat Simple_repeat 1 31 0 * 2202 168 71 24 chr4 20732033 20732101 -181596246 + MLT2A2 LTR ERVL 447 554 0 202 361 67 0 chr4 20732410 20732529 -181595818 + L2 LINE L2 3146 3272 0 332 230 0 70 chr4 20733236 20733387 -181594960 - MIR SINE MIR -71 191 16 1398 250 32 20 chr4 20734693 20735101 -181593246 + LTR52 LTR ERVL 4 416 -5 4397 180 15 15 chr4 20735150 20736013 -181592334 + MER6 DNA MER2_type 1 863 -2 260 353 60 37 chr4 20736366 20736666 -181591681 + L2 LINE L2 673 979 -2335 336 332 91 85 chr4 20737884 20738530 -181589817 + L2 LINE L2 2609 3264 -8 223 295 114 9 chr4 20738615 20738720 -181589627 + MIR3 SINE MIR 82 197 -11 528 297 26 31 chr4 20739255 20739447 -181588900 + MIR SINE MIR 15 205 -57 390 333 98 0 chr4 20739728 20739851 -181588496 - L2 LINE L2 -4 3268 3134 265 111 0 0 chr4 20739901 20739937 -181588410 - U2 snRNA snRNA -152 36 1 1140 322 94 13 chr4 20740622 20741433 -181586914 - L2 LINE L2 -2 3311 2448 180 381 124 9 chr4 20742403 20742508 -181585839 + MIR3 SINE MIR 43 159 -49 21 0 0 0 chr4 20742637 20742658 -181585689 + AT_rich Low_complexity Low_complexity 1 21 0 438 20 0 0 chr4 20742737 20742788 -181585559 + (TCTA)n Simple_repeat Simple_repeat 3 53 0 2041 147 42 20 chr4 20743594 20743948 -181584399 - THE1B LTR MaLR -2 362 1 25 65 0 0 chr4 20744721 20744767 -181583580 + AT_rich Low_complexity Low_complexity 1 46 0 433 300 85 39 chr4 20745036 20745319 -181583028 + L1MA9 LINE L1 5966 6261 -30 21 0 0 0 chr4 20745363 20745384 -181582963 + AT_rich Low_complexity Low_complexity 1 21 0 478 314 8 0 chr4 20745423 20745547 -181582800 - L2 LINE L2 -1 3312 3188 260 314 84 52 chr4 20745648 20745839 -181582508 - L2 LINE L2 -133 3180 2984 271 273 23 0 chr4 20745924 20746012 -181582335 + GA-rich Low_complexity Low_complexity 5 94 0 287 274 66 28 chr4 20746087 20746193 -181582154 + MLT1H1 LTR MaLR 446 555 0 341 297 88 0 chr4 20746296 20746444 -181581903 + MIR SINE MIR 74 234 -28 2353 254 36 36 chr4 20746629 20747365 -181580982 + L1M2 LINE L1 1177 1918 -4931 2058 122 6 6 chr4 20747365 20747677 -181580670 + AluSx SINE Alu 1 312 0 2353 254 36 36 chr4 20747677 20747813 -181580534 + L1M2 LINE L1 1918 2052 -4797 1658 211 6 0 chr4 20747794 20748154 -181580193 + L1M2 LINE L1 2513 2874 -3975 * 30 0 0 0 chr4 20749867 20749897 -181578450 + AT_rich Low_complexity Low_complexity 1 30 0 2309 123 123 5 chr4 20751487 20751870 -181576477 + MSTA LTR MaLR 1 428 0 200 189 0 38 chr4 20751974 20751989 -181576358 + A-rich Low_complexity Low_complexity 5 55 0 2187 78 35 0 chr4 20751989 20752310 -181576037 + AluY SINE Alu 1 331 0 24 32 0 0 chr4 20753727 20753758 -181574589 + AT_rich Low_complexity Low_complexity 1 31 0 307 206 0 22 chr4 20753965 20754057 -181574290 + (TA)n Simple_repeat Simple_repeat 2 91 0 770 253 52 13 chr4 20754849 20755082 -181573265 - MIR SINE MIR 0 262 21 236 294 73 0 chr4 20756077 20756145 -181572202 + MIR SINE MIR 3 75 -187 1122 214 49 106 chr4 20756157 20756648 -181571699 - MER39 LTR ERV1 -2 705 243 259 241 276 0 chr4 20756620 20756707 -181571640 - MER34 LTR ERV1 -431 111 1 * 183 286 0 24 chr4 20756707 20756749 -181571598 + L2 LINE L2 3199 3239 -33 2132 93 0 7 chr4 20757178 20757458 -181570889 + AluY SINE Alu 20 297 -14 234 287 23 93 chr4 20758089 20758218 -181570129 + MIR SINE MIR 117 236 -26 251 296 12 12 chr4 20758282 20758363 -181569984 + Charlie1 DNA MER1_type 2 82 -2679 1056 138 110 0 chr4 20758381 20758603 -181569744 + L1MB2 LINE L1 5729 5976 -195 2378 162 91 29 chr4 20758663 20759189 -181569158 - MER34B LTR ERV1 -6 559 1 418 204 31 130 chr4 20759189 20759240 -181569107 - MLT1B LTR MaLR -26 364 308 1959 126 0 63 chr4 20759240 20759574 -181568773 - AluSq SINE Alu 0 313 1 418 204 31 130 chr4 20759574 20759673 -181568674 - MLT1B LTR MaLR -82 308 230 754 222 72 25 chr4 20759817 20759951 -181568396 + Charlie1 DNA MER1_type 2465 2591 -170 472 24 61 0 chr4 20759951 20760033 -181568314 + (TA)n Simple_repeat Simple_repeat 2 88 0 2330 81 3 0 chr4 20760034 20760330 -181568017 - AluY SINE Alu -14 297 1 754 222 72 25 chr4 20760330 20760472 -181567875 + Charlie1 DNA MER1_type 2590 2756 -5 645 197 7 7 chr4 20760695 20760847 -181567500 + MER53 DNA DNA 38 189 0 256 259 0 0 chr4 20761245 20761303 -181567044 - MER94 DNA DNA -2 132 75 22 0 0 0 chr4 20761526 20761548 -181566799 + AT_rich Low_complexity Low_complexity 1 22 0 299 289 18 0 chr4 20761829 20761943 -181566404 + MER20B DNA MER1_type 667 782 -1 563 268 21 0 chr4 20761990 20762132 -181566215 - MIR SINE MIR -21 241 97 259 160 0 20 chr4 20762187 20762237 -181566110 - L2 LINE L2 0 3313 3265 217 339 58 37 chr4 20762242 20762484 -181565863 + L2 LINE L2 1230 1476 -1838 762 203 140 0 chr4 20762694 20762916 -181565431 + MER33 DNA MER1_type 5 257 -67 2860 214 65 3 chr4 20762935 20763608 -181564739 - L1MB2 LINE L1 -10 6161 5447 281 318 17 29 chr4 20763662 20763835 -181564512 - HAL1 LINE L1 -952 1555 1385 1146 343 147 23 chr4 20763842 20765112 -181563235 + L2 LINE L2 1869 3309 -4 429 293 55 114 chr4 20766021 20766563 -181561784 - L2 LINE L2 0 3313 2804 21 36 0 0 chr4 20767228 20767256 -181561091 + AT_rich Low_complexity Low_complexity 1 28 0 230 380 50 0 chr4 20767445 20767545 -181560802 - L3 LINE CR1 -454 1123 1019 2087 100 55 0 chr4 20767659 20767949 -181560398 - AluSp SINE Alu -7 306 1 627 285 47 5 chr4 20769034 20769248 -181559099 + L3b LINE CR1 1226 1448 -135 187 394 64 0 chr4 20769455 20769549 -181558798 + MIR SINE MIR 5 104 -158 365 233 133 25 chr4 20769699 20769819 -181558528 - MIR SINE MIR -56 206 74 624 286 5 10 chr4 20770464 20770667 -181557680 - MER105 DNA DNA -2 202 1 215 169 39 13 chr4 20771271 20771348 -181556999 + (TA)n Simple_repeat Simple_repeat 2 80 0 2394 81 0 0 chr4 20772193 20772489 -181555858 + AluSc SINE Alu 1 296 -13 291 85 0 0 chr4 20772489 20772536 -181555811 + (TA)n Simple_repeat Simple_repeat 2 48 0 369 0 0 0 chr4 20772758 20772799 -181555548 + (TA)n Simple_repeat Simple_repeat 1 41 0 1488 211 195 10 chr4 20773748 20773934 -181554413 + MLT1C LTR MaLR 1 151 -316 297 0 0 0 chr4 20773934 20773967 -181554380 + (CA)n Simple_repeat Simple_repeat 2 34 0 1488 211 195 10 chr4 20773967 20774135 -181554212 + MLT1C LTR MaLR 151 287 -180 18071 28 1 0 chr4 20774135 20777058 -181551289 - L1PA2 LINE L1 0 6155 3232 1488 211 195 10 chr4 20777058 20777096 -181551251 + MLT1C LTR MaLR 287 467 0 294 261 45 27 chr4 20777306 20777417 -181550930 - L3 LINE CR1 -86 1491 1379 4967 163 51 12 chr4 20777614 20779148 -181549199 - L1MA5 LINE L1 -54 6246 4666 2411 244 59 23 chr4 20779343 20780305 -181548042 + L1 LINE L1 2387 3383 -2763 2597 189 68 41 chr4 20780305 20781013 -181547334 + L1 LINE L1 3910 4636 -1510 410 365 90 28 chr4 20781250 20781748 -181546599 - L2 LINE L2 -346 2968 2440 424 256 8 25 chr4 20781993 20782114 -181546233 - MLT1H LTR MaLR -306 243 125 944 231 63 72 chr4 20782914 20783277 -181545070 + MLT1D LTR MaLR 1 360 -145 29328 33 5 1 chr4 20783277 20787672 -181540675 + L1PA3 LINE L1 1741 6155 0 804 188 7 0 chr4 20787676 20787825 -181540522 + MLT1D LTR MaLR 353 502 -3 23 0 0 0 chr4 20787939 20787962 -181540385 + AT_rich Low_complexity Low_complexity 1 23 0 25 51 0 0 chr4 20788055 20788094 -181540253 + AT_rich Low_complexity Low_complexity 1 39 0 82 44 0 7 chr4 20788259 20788310 -181540037 + AT_rich Low_complexity Low_complexity 1 51 -83 180 0 0 0 chr4 20788310 20788330 -181540017 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 82 44 0 7 chr4 20788330 20788413 -181539934 + AT_rich Low_complexity Low_complexity 51 134 0 222 267 27 13 chr4 20790666 20790741 -181537606 - MER5A DNA MER1_type -1 188 113 184 218 13 26 chr4 20790929 20791007 -181537340 + GA-rich Low_complexity Low_complexity 1 77 0 487 301 48 5 chr4 20791204 20791390 -181536957 + MIR SINE MIR 44 237 -25 433 312 38 0 chr4 20791386 20791543 -181536804 + L2 LINE L2 2708 2870 -444 * 1274 169 16 4 chr4 20791712 20791961 -181536386 - L1PA16 LINE L1 -156 6010 5759 306 175 0 0 chr4 20791959 20792016 -181536331 + L1P4 LINE L1 5666 5722 -444 * 1065 215 79 21 chr4 20792917 20793257 -181535090 + L1MB7 LINE L1 5823 6182 -2 26 30 0 0 chr4 20793293 20793326 -181535021 + AT_rich Low_complexity Low_complexity 1 33 0 206 359 76 89 chr4 20793977 20794370 -181533977 - L2 LINE L2 -45 3227 2840 278 412 38 0 chr4 20794704 20794835 -181533512 - L2 LINE L2 0 3272 3137 1987 121 10 0 chr4 20795443 20795732 -181532615 + AluSx SINE Alu 1 292 -20 22 35 0 0 chr4 20796729 20796758 -181531589 + AT_rich Low_complexity Low_complexity 1 29 0 457 143 31 10 chr4 20796968 20797066 -181531281 + GA-rich Low_complexity Low_complexity 3 102 0 270 0 0 0 chr4 20797066 20797096 -181531251 + (TG)n Simple_repeat Simple_repeat 2 31 0 243 0 0 0 chr4 20797098 20797125 -181531222 + (GA)n Simple_repeat Simple_repeat 2 28 0 396 332 62 14 chr4 20797371 20797582 -181530765 + MLT1I LTR MaLR 1 221 -188 410 236 94 31 chr4 20798251 20798378 -181529969 + L2 LINE L2 3179 3313 0 363 23 0 0 chr4 20798427 20798471 -181529876 + (CA)n Simple_repeat Simple_repeat 2 45 0 264 114 0 23 chr4 20798536 20798580 -181529767 - MADE1 DNA Mariner -37 43 1 464 357 51 0 chr4 20799888 20800084 -181528263 - MIR SINE MIR 0 262 57 386 269 48 35 chr4 20800206 20800351 -181527996 - MIR SINE MIR -32 230 84 390 169 0 0 chr4 20800565 20800636 -181527711 - L1PA16 LINE L1 -3 6163 6093 11503 104 13 2 chr4 20800761 20801193 -181527154 + L1P LINE L1 3072 3498 -2648 216 0 0 0 chr4 20801193 20801217 -181527130 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 11503 104 13 2 chr4 20801217 20802519 -181525828 + L1P LINE L1 3498 4826 -1320 180 85 106 64 chr4 20802776 20802823 -181525524 - L3b LINE CR1 -330 1253 1205 522 214 71 0 chr4 20802837 20802963 -181525384 - MER5A DNA MER1_type -3 186 52 6899 130 104 1 chr4 20803091 20804211 -181524136 - THE1B-int LTR MaLR -344 1236 1 2343 116 55 0 chr4 20804211 20804556 -181523791 - THE1B LTR MaLR 0 364 1 646 215 67 99 chr4 20804556 20804840 -181523507 + L1MC4 LINE L1 7403 7677 -365 276 30 0 0 chr4 20804880 20804913 -181523434 + (TA)n Simple_repeat Simple_repeat 2 34 0 467 269 70 78 chr4 20905149 20905420 -181422927 - HAL1b LINE L1 -1014 334 66 21 0 0 0 chr4 20905781 20905802 -181422545 + AT_rich Low_complexity Low_complexity 1 21 0 220 208 0 0 chr4 20906216 20906269 -181422078 + T-rich Low_complexity Low_complexity 1 53 0 793 274 56 94 chr4 20907344 20907847 -181420500 - MER102b DNA MER1_type -43 298 29 924 167 9 71 chr4 20907953 20908226 -181420121 - L1M LINE L1 -745 5401 5161 1358 229 8 11 chr4 20908556 20908909 -181419438 + L1M4 LINE L1 4918 5269 -877 931 256 0 31 chr4 20908910 20909137 -181419210 + Tigger5 DNA MER2_type 1 220 -2103 3685 47 0 8 chr4 20909239 20909711 -181418636 - L1P LINE L1 -893 5253 4786 6713 28 1 0 chr4 20909711 20910504 -181417843 + L1P LINE L1 3992 4785 -1361 259 281 0 0 chr4 20910546 20910610 -181417737 + MIR SINE MIR 164 227 -35 23 40 0 0 chr4 20910818 20910843 -181417504 + AT_rich Low_complexity Low_complexity 1 25 0 180 0 0 0 chr4 20910868 20910888 -181417459 + (T)n Simple_repeat Simple_repeat 1 20 0 810 284 4 6 chr4 20911441 20911677 -181416670 + MIR SINE MIR 30 262 0 207 309 72 42 chr4 20911730 20911966 -181416381 - L2 LINE L2 -220 3052 2810 5522 115 11 23 chr4 20912486 20912904 -181415443 + L1PA13 LINE L1 5229 5650 -513 1625 153 97 31 chr4 20912904 20913256 -181415091 - THE1C LTR MaLR 0 375 1 5522 115 11 23 chr4 20913256 20913783 -181414564 + L1PA13 LINE L1 5650 6163 0 459 266 22 0 chr4 20913964 20914103 -181414244 + L1MA8 LINE L1 6140 6281 -10 201 341 62 47 chr4 20914213 20914342 -181414005 - MIR3 SINE MIR -69 139 9 215 360 100 34 chr4 20915161 20915400 -181412947 + L3b LINE CR1 1108 1362 -221 2427 73 0 19 chr4 20916908 20917225 -181411122 + AluY SINE Alu 1 311 0 308 261 93 20 chr4 20917616 20917911 -181410436 + L1M4c LINE L1 1031 1354 -5030 14605 28 0 0 chr4 20918433 20920304 -181408043 - L1P1 LINE L1 -636 5519 3649 873 119 0 35 chr4 20920304 20920447 -181407900 - AluJb SINE Alu -174 138 1 347 357 42 65 chr4 20920587 20920940 -181407407 + L2 LINE L2 2888 3232 -40 228 282 14 14 chr4 20920998 20921069 -181407278 - Zaphod DNA AcHobo 0 4031 3961 2860 3 0 3 chr4 20921069 20921381 -181406966 + AluYa5 SINE Alu 1 311 0 1907 189 31 3 chr4 20922562 20922917 -181405430 - MLT1A1 LTR MaLR 0 365 1 1869 130 25 7 chr4 20923797 20924082 -181404265 + AluSg SINE Alu 21 310 0 21 36 0 0 chr4 20924386 20924414 -181403933 + AT_rich Low_complexity Low_complexity 1 28 0 1044 238 102 0 chr4 20924948 20925242 -181403105 - L1MA9 LINE L1 -39 6273 5950 254 194 194 0 chr4 20925458 20925525 -181402822 - MER65A LTR ERV1 -365 80 1 244 230 11 92 chr4 20925953 20926040 -181402307 - MIR SINE MIR -1 261 182 1781 171 0 23 chr4 20926044 20926230 -181402117 - AluJb SINE Alu -20 292 114 2469 122 14 3 chr4 20926230 20926590 -181401757 - THE1B LTR MaLR 0 364 1 1781 171 0 23 chr4 20926590 20926702 -181401645 - AluJb SINE Alu -198 114 1 1999 119 9 41 chr4 20926704 20927024 -181401323 - AluSx SINE Alu -2 310 1 331 264 11 11 chr4 20927263 20927350 -181400997 + L2 LINE L2 3184 3270 -2 21 57 0 0 chr4 20928039 20928074 -181400273 + AT_rich Low_complexity Low_complexity 1 35 0 1994 135 26 34 chr4 20928209 20928587 -181399760 + THE1C LTR MaLR 1 375 0 188 317 85 24 chr4 20928588 20928670 -181399677 + MIR SINE MIR 1 87 -175 7093 32 2 0 chr4 20928730 20929576 -181398771 - L1PA4 LINE L1 0 6155 5308 247 196 22 0 chr4 20929676 20929722 -181398625 + Tigger5 DNA MER2_type 2276 2322 -1 5073 183 24 19 chr4 20929727 20930770 -181397577 + L1MC1 LINE L1 5273 6320 -13 316 291 11 116 chr4 20931835 20931982 -181396365 + MER5B DNA MER1_type 4 128 -50 216 0 0 0 chr4 20931982 20932006 -181396341 + (GA)n Simple_repeat Simple_repeat 1 24 0 316 291 11 116 chr4 20932006 20932047 -181396300 + MER5B DNA MER1_type 128 172 -6 213 309 0 0 chr4 20932226 20932281 -181396066 + MER5A DNA MER1_type 135 189 0 310 303 73 9 chr4 20932365 20932474 -181395873 - L2 LINE L2 -1 3271 3156 244 316 20 31 chr4 20932964 20933062 -181395285 + L2 LINE L2 3199 3295 -18 224 349 47 9 chr4 20933099 20933205 -181395142 - L2 LINE L2 -1302 2012 1903 2022 105 26 36 chr4 20933283 20933587 -181394760 + AluY SINE Alu 1 301 -10 278 340 19 39 chr4 20934843 20934999 -181393348 + MLT1K LTR MaLR 27 179 -409 1388 206 55 70 chr4 20935010 20935393 -181392954 - MER82 DNA MER2_type 0 653 277 3348 20 10 0 chr4 20935496 20935890 -181392457 + L1PA3 LINE L1 5758 6155 0 1139 149 0 17 chr4 20935891 20936066 -181392281 + AluJb SINE Alu 129 300 -12 339 113 0 0 chr4 20936082 20936135 -181392212 + (GGGGA)n Simple_repeat Simple_repeat 5 57 0 537 327 15 29 chr4 20936185 20936390 -181391957 - MIR SINE MIR -29 233 32 205 143 0 41 chr4 20936417 20936466 -181391881 + (TTATA)n Simple_repeat Simple_repeat 1 47 0 47 53 0 0 chr4 20936485 20936560 -181391787 + AT_rich Low_complexity Low_complexity 1 75 0 370 313 163 0 chr4 20936560 20936741 -181391606 - MIR SINE MIR -15 247 39 180 0 0 0 chr4 20937370 20937390 -181390957 + (TTG)n Simple_repeat Simple_repeat 2 21 0 262 335 42 38 chr4 20937666 20937902 -181390445 - MIR SINE MIR -1 261 25 26 64 0 0 chr4 20937909 20937956 -181390391 + AT_rich Low_complexity Low_complexity 1 47 0 29 28 0 0 chr4 20938079 20938115 -181390232 + AT_rich Low_complexity Low_complexity 1 36 0 450 320 171 0 chr4 20938624 20938805 -181389542 + L3 LINE CR1 609 820 -757 261 370 46 0 chr4 20938860 20938968 -181389379 + L3 LINE CR1 1011 1123 -454 3347 115 8 14 chr4 20939410 20939924 -181388423 - MER9 LTR ERVK 0 511 1 1463 238 106 64 chr4 20940442 20941284 -181387063 - L1MC5 LINE L1 -435 7526 6650 498 227 46 8 chr4 20941930 20942075 -181386272 + MLT1C LTR MaLR 1 150 -355 769 253 91 32 chr4 20942580 20942888 -181385459 + MLT1C LTR MaLR 138 463 -4 391 273 0 27 chr4 20943314 20943424 -181384923 + MIR SINE MIR 9 115 -147 1013 208 5 14 chr4 20944231 20944447 -181383900 + MER20 DNA MER1_type 3 216 -3 3334 198 16 6 chr4 20944507 20945210 -181383137 + L1P LINE L1 4555 5264 -882 1385 222 30 6 chr4 20946287 20946621 -181381726 - L1MB3 LINE L1 -255 5928 5587 1040 158 24 57 chr4 20946644 20946890 -181381457 - L1MA4A LINE L1 -13 6290 6053 3782 150 36 15 chr4 20946920 20947366 -181380981 - L1MA4A LINE L1 -215 6088 5620 2047 139 48 17 chr4 20947366 20947719 -181380628 - THE1B LTR MaLR 0 364 1 3782 150 36 15 chr4 20947719 20947985 -181380362 - L1MA4A LINE L1 -683 5620 5361 4205 231 102 31 chr4 20948016 20950068 -181378279 - L1PB4 LINE L1 -1 6155 3745 2111 119 3 0 chr4 20950068 20950361 -181377986 - AluSx SINE Alu -15 297 4 4205 231 102 31 chr4 20950361 20950931 -181377416 - L1PB4 LINE L1 -2411 3745 3217 2154 117 3 0 chr4 20952042 20952349 -181375998 - AluSc SINE Alu -1 308 1 25 0 0 0 chr4 20952357 20952382 -181375965 + AT_rich Low_complexity Low_complexity 1 25 0 1813 126 7 11 chr4 20954053 20954330 -181374017 - AluSx SINE Alu -7 305 30 488 293 84 29 chr4 20954674 20954913 -181373434 + MLT1I LTR MaLR 156 407 -2 746 340 135 15 chr4 20954930 20955597 -181372750 + L2 LINE L2 1327 2073 -1241 250 250 47 0 chr4 20955624 20955688 -181372659 + L2 LINE L2 3247 3313 0 249 33 0 0 chr4 20955929 20955959 -181372388 + (TGAA)n Simple_repeat Simple_repeat 4 33 0 552 318 62 49 chr4 20955965 20956352 -181371995 - L3 LINE CR1 -630 947 556 30 27 0 0 chr4 20956429 20956466 -181371881 + AT_rich Low_complexity Low_complexity 1 37 0 4697 62 11 2 chr4 20956637 20957277 -181371070 + L1PA8 LINE L1 5541 6186 0 189 308 0 0 chr4 20957977 20958029 -181370318 + L2 LINE L2 3262 3313 0 285 340 57 21 chr4 20958786 20958960 -181369387 + MIR SINE MIR 9 181 -63 22 0 0 0 chr4 20959647 20959669 -181368678 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4 20959684 20959705 -181368642 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr4 20959857 20959880 -181368467 + AT_rich Low_complexity Low_complexity 1 23 0 242 304 171 32 chr4 20960209 20960367 -181367980 - MIR3 SINE MIR -13 195 16 253 337 63 34 chr4 20960375 20960550 -181367797 - MIR3 SINE MIR -10 198 19 2544 58 0 6 chr4 20961271 20961584 -181366763 - AluY SINE Alu 0 311 1 668 334 33 66 chr4 20962181 20962723 -181365624 + L2 LINE L2 2779 3312 -1 229 246 0 0 chr4 20962724 20962746 -181365601 + (TGAA)n Simple_repeat Simple_repeat 2 23 -35 2016 125 0 14 chr4 20962746 20963041 -181365306 + AluSx SINE Alu 1 291 -21 229 246 0 0 chr4 20963041 20963075 -181365272 + (TGAA)n Simple_repeat Simple_repeat 22 58 0 288 136 0 0 chr4 20964317 20964361 -181363986 + L1MA4 LINE L1 6185 6228 -72 1900 233 48 33 chr4 20964465 20965101 -181363246 - L1 LINE L1 -3322 3526 2878 28 48 0 0 chr4 20965101 20965143 -181363204 + AT_rich Low_complexity Low_complexity 1 42 0 12824 209 66 11 chr4 20965148 20967878 -181360469 - L1 LINE L1 -3971 2878 1 22 35 0 0 chr4 20968358 20968387 -181359960 + AT_rich Low_complexity Low_complexity 1 29 0 1963 141 7 23 chr4 20969001 20969307 -181359040 - AluSq SINE Alu -12 301 1 414 0 0 0 chr4 20970201 20970247 -181358100 + (TA)n Simple_repeat Simple_repeat 1 46 0 9054 32 11 0 chr4 20970251 20972105 -181356242 - L1PA4 LINE L1 -5 6150 4284 2043 205 35 6 chr4 20972105 20972586 -181355761 - L1MC2 LINE L1 -16 6328 5823 212 0 36 0 chr4 20972931 20972959 -181355388 + (TC)n Simple_repeat Simple_repeat 2 30 0 776 309 75 75 chr4 20973062 20973437 -181354910 + LTR16C LTR ERVL 113 487 -4 219 359 38 50 chr4 20975692 20975851 -181352496 - L2 LINE L2 -31 3241 3085 306 272 142 24 chr4 20975999 20976139 -181352208 - MER58B DNA MER1_type -1 340 180 322 291 80 34 chr4 20976741 20976916 -181351431 + L2 LINE L2 3116 3298 -15 3801 24 0 0 chr4 20977044 20977500 -181350847 - L1PA3 LINE L1 -794 5352 4897 7114 19 1 0 chr4 20977500 20978321 -181350026 + L1PA3 LINE L1 5331 6155 0 244 268 72 0 chr4 20978618 20978715 -181349632 - L1MC4 LINE L1 -1341 6701 6598 269 275 56 56 chr4 20978912 20979054 -181349293 - L2 LINE L2 -1 3312 3171 275 396 80 0 chr4 20979369 20979556 -181348791 - L2 LINE L2 -612 2702 2501 347 300 7 47 chr4 20980925 20981075 -181347272 - L2 LINE L2 -1 3312 3169 487 282 150 29 chr4 20981077 20981360 -181346987 - L2 LINE L2 -247 3066 2752 856 271 136 71 chr4 20981361 20981879 -181346468 + MLT1G1 LTR MaLR 1 595 0 2766 304 148 36 chr4 20981909 20982090 -181346257 - L2 LINE L2 -600 2714 2555 2091 120 3 0 chr4 20982090 20982389 -181345958 - AluSg SINE Alu -10 300 1 2766 304 148 36 chr4 20982389 20983736 -181344611 - L2 LINE L2 -759 2555 1015 207 0 0 0 chr4 20983776 20983799 -181344548 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 844 181 12 0 chr4 20984619 20984785 -181343562 + L1P LINE L1 4899 5066 -1080 292 236 29 132 chr4 20985088 20985262 -181343085 + L2 LINE L2 2891 3046 -226 268 317 172 40 chr4 20985313 20985540 -181342807 + MIR SINE MIR 6 262 0 21 57 0 0 chr4 20985798 20985833 -181342514 + AT_rich Low_complexity Low_complexity 1 35 0 7017 92 4 3 chr4 20985833 20987622 -181340725 - L1PA7 LINE L1 -3 6151 4366 26 64 0 0 chr4 20987754 20987801 -181340546 + AT_rich Low_complexity Low_complexity 1 47 0 2134 118 0 10 chr4 20988113 20988417 -181339930 + AluSx SINE Alu 5 305 -7 1593 217 31 14 chr4 20989424 20989783 -181338564 + MLT1A1 LTR MaLR 1 365 0 1364 187 83 48 chr4 20990274 20990649 -181337698 + MLT1B LTR MaLR 3 390 0 1339 331 68 25 chr4 20990911 20991482 -181336865 + MER115 DNA AcHobo 90 685 -8 207 157 20 20 chr4 20992080 20992131 -181336216 + (TTATA)n Simple_repeat Simple_repeat 4 54 0 431 149 0 0 chr4 20992494 20992568 -181335779 + L1PB4 LINE L1 6080 6153 -3 1251 245 69 48 chr4 20993214 20993695 -181334652 + MLT1D LTR MaLR 7 497 -8 484 304 20 14 chr4 20993703 20993851 -181334496 + MIR SINE MIR 107 255 -7 1209 220 30 26 chr4 20994238 20994542 -181333805 + MLT1A1 LTR MaLR 61 365 0 1927 34 0 0 chr4 20994594 20994827 -181333520 - L1PA3 LINE L1 0 6155 5923 2886 18 0 0 chr4 20994827 20995157 -181333190 + L1PA3 LINE L1 5567 5896 -259 193 250 183 10 chr4 20995157 20995261 -181333086 + MIR SINE MIR 125 246 -16 439 177 0 0 chr4 20995409 20995488 -181332859 + L1PB4 LINE L1 5897 5975 -181 1639 183 174 11 chr4 20995496 20995857 -181332490 + MSTA LTR MaLR 9 428 0 716 213 11 55 chr4 20995862 20996045 -181332302 + L1PB4 LINE L1 5980 6154 -2 213 339 83 28 chr4 20997948 20998128 -181330219 + MIR SINE MIR 73 262 0 216 86 0 0 chr4 20998948 20998983 -181329364 + (A)n Simple_repeat Simple_repeat 1 35 0 186 43 0 0 chr4 20999268 20999291 -181329056 + (TA)n Simple_repeat Simple_repeat 2 24 0 322 328 144 10 chr4 20999847 21000048 -181328299 + MIR SINE MIR 35 262 0 256 358 113 54 chr4 21000249 21000489 -181327858 - L2 LINE L2 -21 3251 2998 234 298 206 21 chr4 21000488 21000629 -181327718 - MIR3 SINE MIR -18 190 24 * 351 78 0 0 chr4 21001325 21001376 -181326971 + (TG)n Simple_repeat Simple_repeat 1 51 0 371 133 60 0 chr4 21002377 21002460 -181325887 - L1MA7 LINE L1 -3 6288 6201 2180 122 3 3 chr4 21002498 21002809 -181325538 - AluSq SINE Alu 0 313 3 5465 41 3 0 chr4 21003064 21003729 -181324618 - L1PA3 LINE L1 0 6155 5489 351 351 82 34 chr4 21003729 21003937 -181324410 - MIR SINE MIR -42 220 3 195 42 0 0 chr4 21004264 21004288 -181324059 + (TAAAAA)n Simple_repeat Simple_repeat 3 26 0 209 254 56 58 chr4 21004463 21004571 -181323776 + MIR3 SINE MIR 86 203 -5 289 244 71 54 chr4 21004708 21004876 -181323471 - MLT1J1 LTR MaLR 0 446 276 544 231 98 40 chr4 21004917 21005090 -181323257 - MLT1J2 LTR MaLR -261 189 7 645 14 0 0 chr4 21005208 21005282 -181323065 + (TTCC)n Simple_repeat Simple_repeat 4 77 0 294 87 0 0 chr4 21005282 21005328 -181323019 + (TC)n Simple_repeat Simple_repeat 2 47 0 1366 131 0 19 chr4 21005328 21005534 -181322813 - AluSc SINE Alu -37 272 71 464 129 0 0 chr4 21005580 21005650 -181322697 - AluSc SINE Alu -240 70 1 4657 101 5 0 chr4 21005804 21006457 -181321890 - L1PA13 LINE L1 -3 6160 5505 486 274 51 0 chr4 21006471 21006588 -181321759 + L2 LINE L2 3187 3309 -4 1784 159 130 16 chr4 21006659 21007043 -181321304 + MSTA LTR MaLR 1 428 0 892 121 34 0 chr4 21007936 21008085 -181320262 - L1MA4 LINE L1 -8 6292 6139 209 318 12 24 chr4 21008505 21008590 -181319757 - MIR SINE MIR -27 235 152 202 264 19 0 chr4 21008668 21008721 -181319626 + L2 LINE L2 3255 3308 -5 1331 267 94 40 chr4 21008752 21009272 -181319075 - MLT1E LTR MaLR 0 593 46 452 301 19 62 chr4 21010067 21010276 -181318071 + MIR SINE MIR 57 256 -6 212 283 0 0 chr4 21010660 21010713 -181317634 - L2 LINE L2 -1 3271 3219 806 278 48 0 chr4 21010762 21010971 -181317376 - MIR SINE MIR -16 246 28 980 141 19 19 chr4 21011149 21011305 -181317042 + FRAM SINE Alu 1 156 -20 1709 167 43 56 chr4 21011784 21012179 -181316168 - MLT1B LTR MaLR 0 390 1 497 278 158 5 chr4 21012335 21012544 -181315803 - MIR SINE MIR 0 262 22 2154 136 3 0 chr4 21012780 21013090 -181315257 + AluSx SINE Alu 1 311 -1 23 54 0 0 chr4 21013702 21013739 -181314608 + AT_rich Low_complexity Low_complexity 1 37 0 431 259 69 0 chr4 21014087 21014203 -181314144 - MIR SINE MIR -59 203 80 1004 264 136 29 chr4 21014238 21014693 -181313654 - MLT1D LTR MaLR 0 505 2 564 298 50 33 chr4 21015814 21016113 -181312234 + L1ME3A LINE L1 5653 5956 -214 204 231 0 0 chr4 21016685 21016737 -181311610 + CT-rich Low_complexity Low_complexity 1 52 0 556 187 53 64 chr4 21017171 21017358 -181310989 + MER53 DNA DNA 4 188 -1 1570 220 65 44 chr4 21017376 21017871 -181310476 + MLT1D LTR MaLR 1 505 0 434 333 116 44 chr4 21019201 21019865 -181308482 - L2 LINE L2 -864 2450 1739 363 96 0 0 chr4 21020839 21020891 -181307456 + (GA)n Simple_repeat Simple_repeat 1 52 0 2295 122 23 3 chr4 21021056 21021400 -181306947 + THE1B LTR MaLR 14 364 0 3327 72 26 78 chr4 21021400 21021939 -181306408 + THE1B-int LTR MaLR 1 511 -1069 2156 165 44 30 chr4 21021972 21022516 -181305831 + MLT2A2 LTR ERVL 1 554 0 22 56 0 0 chr4 21023284 21023320 -181305027 + AT_rich Low_complexity Low_complexity 1 36 0 1423 291 74 13 chr4 21023874 21024334 -181304013 + Zaphod DNA AcHobo 21 508 -3523 45 55 0 0 chr4 21024473 21024546 -181303801 + AT_rich Low_complexity Low_complexity 1 73 0 1713 143 137 16 chr4 21024770 21025091 -181303256 - THE1B LTR MaLR -4 360 1 428 192 75 25 chr4 21025112 21025232 -181303115 + Zaphod DNA AcHobo 3737 3862 -169 7125 188 24 52 chr4 21025253 21027153 -181301194 + L1PB4 LINE L1 3462 5242 -914 216 0 0 0 chr4 21027153 21027177 -181301170 + (CAA)n Simple_repeat Simple_repeat 1 24 0 7125 188 24 52 chr4 21027177 21028065 -181300282 + L1PB4 LINE L1 5242 6154 -2 414 0 0 0 chr4 21028107 21028153 -181300194 + (T)n Simple_repeat Simple_repeat 1 46 0 21 36 0 0 chr4 21028170 21028198 -181300149 + GC_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr4 21028297 21028320 -181300027 + AT_rich Low_complexity Low_complexity 1 23 0 604 260 21 62 chr4 21028648 21028840 -181299507 - MER82 DNA MER2_type -469 184 1 421 299 40 40 chr4 21028849 21029023 -181299324 + MLT1K LTR MaLR 257 430 -158 244 315 0 33 chr4 21029092 21029184 -181299163 + MLT1K LTR MaLR 444 532 -56 6557 204 11 12 chr4 21029538 21030978 -181297369 - L1PA16 LINE L1 -1443 4703 3266 4605 179 11 6 chr4 21030978 21032278 -181296069 + L1PA16 LINE L1 4710 6014 -152 295 270 60 151 chr4 21032321 21032573 -181295774 + MIR SINE MIR 20 248 -14 1937 80 4 36 chr4 21033216 21033491 -181294856 + AluSp SINE Alu 1 266 -47 30 27 0 0 chr4 21033835 21033872 -181294475 + AT_rich Low_complexity Low_complexity 1 37 0 1428 252 75 23 chr4 21035505 21035946 -181292401 - MLT1D LTR MaLR -4 501 38 418 143 0 14 chr4 21035964 21036034 -181292313 - MLT1D LTR MaLR -423 82 14 271 298 0 0 chr4 21037077 21037161 -181291186 + (TTCA)n Simple_repeat Simple_repeat 1 84 0 501 302 166 0 chr4 21038658 21038863 -181289484 - MIR SINE MIR -12 250 12 569 113 0 10 chr4 21039745 21039842 -181288505 + (GGAA)n Simple_repeat Simple_repeat 3 98 0 1020 111 0 0 chr4 21039842 21039995 -181288352 + (GAAA)n Simple_repeat Simple_repeat 1 153 0 276 322 95 19 chr4 21040456 21040731 -181287616 + L2 LINE L2 2714 3061 -252 237 309 173 31 chr4 21040801 21040992 -181287355 + MLT1G LTR MaLR 279 496 -94 199 197 49 115 chr4 21041037 21041159 -181287188 + L2 LINE L2 3136 3249 -64 376 287 30 10 chr4 21041225 21041326 -181287021 - MIR SINE MIR -111 151 49 28 29 0 0 chr4 21041336 21041371 -181286976 + AT_rich Low_complexity Low_complexity 1 35 0 627 286 132 0 chr4 21041414 21041627 -181286720 + MIR SINE MIR 9 249 -13 294 362 34 34 chr4 21041893 21042100 -181286247 - MIR3 SINE MIR -1 207 1 2210 139 28 0 chr4 21043025 21043378 -181284969 + THE1B LTR MaLR 1 363 -1 374 300 81 19 chr4 21043797 21043957 -181284390 - MIR SINE MIR -34 228 59 213 65 0 0 chr4 21044493 21044524 -181283823 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 198 365 27 0 chr4 21045855 21045929 -181282418 - L2 LINE L2 -11 3302 3227 270 0 0 0 chr4 21046130 21046160 -181282187 + (TAA)n Simple_repeat Simple_repeat 2 31 0 2002 130 10 0 chr4 21046182 21046475 -181281872 + AluSx SINE Alu 1 296 -16 1877 255 10 2 chr4 21046786 21047280 -181281067 + L1M4 LINE L1 4567 5064 -1082 265 374 174 0 chr4 21047737 21047852 -181280495 + L2 LINE L2 3134 3268 -4 2084 68 5 2 chr4 21048665 21049229 -181279118 + L1PA7 LINE L1 5479 6147 -7 2241 105 3 0 chr4 21049416 21049712 -181278635 + AluY SINE Alu 1 297 -14 219 256 98 24 chr4 21050444 21050526 -181277821 + MIR SINE MIR 21 108 -154 181 69 0 35 chr4 21050597 21050626 -181277721 + L3 LINE CR1 1234 1261 -316 772 165 6 98 chr4 21050904 21051068 -181277279 + MER5A DNA MER1_type 1 149 -40 227 274 0 0 chr4 21051277 21051328 -181277019 - L2 LINE L2 -5 3267 3217 21 0 0 0 chr4 21051389 21051410 -181276937 + AT_rich Low_complexity Low_complexity 1 21 0 1741 225 35 72 chr4 21052597 21053112 -181275235 + MLT2B1 LTR ERVL 17 512 -8 313 240 27 0 chr4 21053116 21053191 -181275156 - MIR SINE MIR -89 173 97 885 220 53 104 chr4 21053196 21053514 -181274833 + MLT1F1 LTR MaLR 3 304 -263 664 208 40 20 chr4 21053485 21053675 -181274672 + MLT1F1 LTR MaLR 432 567 0 * 24 0 0 0 chr4 21053892 21053916 -181274431 + AT_rich Low_complexity Low_complexity 1 24 0 385 92 0 2 chr4 21053925 21053985 -181274362 - Alu SINE Alu -250 52 1 2842 156 2 6 chr4 21053985 21054453 -181273894 - L1PA15 LINE L1 -125 6040 5575 351 148 59 30 chr4 21054454 21054555 -181273792 + AluSc SINE Alu 2 105 -194 11782 143 38 64 chr4 21054655 21057080 -181271267 - L1P LINE L1 -3617 2529 167 195 370 43 14 chr4 21057525 21057663 -181270684 + L2 LINE L2 2910 3051 -221 180 176 0 0 chr4 21059169 21059203 -181269144 + A-rich Low_complexity Low_complexity 1 34 0 183 80 0 0 chr4 21059923 21059948 -181268399 + (CA)n Simple_repeat Simple_repeat 2 26 0 228 200 20 0 chr4 21059955 21060005 -181268342 + (TA)n Simple_repeat Simple_repeat 1 51 0 1868 244 87 42 chr4 21060011 21061276 -181267071 - L1ME2 LINE L1 -10 6154 4835 635 254 60 10 chr4 21161283 21161484 -181166863 - HAL1 LINE L1 -1106 1401 1191 26 30 0 0 chr4 21161491 21161524 -181166823 + AT_rich Low_complexity Low_complexity 1 33 0 21 57 0 0 chr4 21161637 21161672 -181166675 + AT_rich Low_complexity Low_complexity 1 35 0 900 296 79 50 chr4 21161905 21162406 -181165941 - HAL1 LINE L1 -1908 599 77 1850 106 102 7 chr4 21162406 21162690 -181165657 - AluSx SINE Alu -1 311 1 900 296 79 50 chr4 21162690 21162770 -181165577 - HAL1 LINE L1 -2430 77 1 250 191 105 182 chr4 21163132 21163341 -181165006 + L2 LINE L2 3116 3308 -5 254 336 55 45 chr4 21164514 21164624 -181163723 + L2 LINE L2 3156 3266 -6 9510 89 15 1 chr4 21164681 21165732 -181162615 - L1P LINE L1 -1568 4578 3503 201 39 0 0 chr4 21165732 21165758 -181162589 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 9510 89 15 1 chr4 21165758 21166072 -181162275 - L1P LINE L1 -2643 3503 3195 6489 65 33 9 chr4 21166072 21167578 -181160769 + L1PA7 LINE L1 4624 6152 -2 864 89 0 0 chr4 21167662 21167785 -181160562 + (TA)n Simple_repeat Simple_repeat 1 123 0 1143 151 122 0 chr4 21168053 21168258 -181160089 + MSTA LTR MaLR 1 230 -198 25 0 0 0 chr4 21168744 21168769 -181159578 + AT_rich Low_complexity Low_complexity 1 25 0 437 182 68 0 chr4 21168769 21168857 -181159490 - FLAM_A SINE Alu -47 95 2 2067 144 0 6 chr4 21169018 21169331 -181159016 - AluSx SINE Alu -1 311 1 2083 113 7 7 chr4 21169400 21169701 -181158646 + AluSq SINE Alu 1 301 -12 642 315 83 15 chr4 21169704 21170223 -181158124 + L2 LINE L2 2682 3313 0 309 282 109 23 chr4 21170419 21170593 -181157754 + MIR SINE MIR 72 260 -2 1212 166 38 8 chr4 21171663 21171898 -181156449 - Tigger2 DNA MER2_type 0 2718 2477 1622 190 6 19 chr4 21171898 21172170 -181156177 + AluJo SINE Alu 1 270 -42 2204 126 36 14 chr4 21172170 21172526 -181155821 - THE1B LTR MaLR 0 364 1 1622 190 6 19 chr4 21172526 21172564 -181155783 + AluJo SINE Alu 270 307 -5 526 103 121 52 chr4 21172568 21172623 -181155724 - Tigger2 DNA MER2_type -225 2493 2443 2059 142 19 16 chr4 21172623 21172997 -181155350 - THE1C LTR MaLR 0 375 1 526 103 121 52 chr4 21172997 21173057 -181155290 - Tigger2 DNA MER2_type -275 2443 2370 20601 112 19 14 chr4 21173157 21176787 -181151560 - L1P3 LINE L1 -551 5672 2058 1091 200 0 0 chr4 21176810 21177000 -181151347 - AluSg/x SINE Alu -18 292 103 2308 95 3 0 chr4 21177103 21177398 -181150949 + AluSp SINE Alu 12 307 -6 1301 193 80 80 chr4 21177700 21177775 -181150572 - MER31B LTR ERV1 -2 659 586 1811 165 131 11 chr4 21177775 21178157 -181150190 + MSTA LTR MaLR 1 428 0 1301 193 80 80 chr4 21178157 21178456 -181149891 - MER31B LTR ERV1 -75 586 87 2019 173 72 22 chr4 21178456 21178860 -181149487 - MSTB LTR MaLR -2 424 1 1301 193 80 80 chr4 21178860 21178948 -181149399 - MER31B LTR ERV1 -574 87 1 21 0 0 0 chr4 21179113 21179134 -181149213 + AT_rich Low_complexity Low_complexity 1 21 0 420 271 62 39 chr4 21179293 21179523 -181148824 + MLT1J LTR MaLR 5 322 -189 220 275 14 0 chr4 21179629 21179698 -181148649 + (ATG)n Simple_repeat Simple_repeat 3 72 0 2261 115 0 10 chr4 21180019 21180332 -181148015 + AluSx SINE Alu 1 310 -2 481 299 42 6 chr4 21181319 21181486 -181146861 - MIR SINE MIR -37 225 53 1103 97 58 11 chr4 21181606 21181784 -181146563 - THE1B LTR MaLR -2 362 183 4217 236 61 40 chr4 21181903 21182868 -181145479 - L1MEc LINE L1 -3242 2973 2030 2199 135 0 0 chr4 21182868 21183180 -181145167 - AluSx SINE Alu 0 312 1 4217 236 61 40 chr4 21183180 21185101 -181143246 - L1MEc LINE L1 -4185 2030 59 1082 332 32 16 chr4 21185357 21185860 -181142487 - ERVL LTR ERVL -2574 3190 2680 665 220 8 8 chr4 21185971 21186103 -181142244 - MER5A DNA MER1_type -32 157 26 370 306 48 27 chr4 21186192 21186425 -181141922 - ERVL LTR ERVL -3224 2430 2203 1052 345 42 24 chr4 21186453 21187079 -181141268 - ERVL LTR ERVL -3636 2128 1492 358 291 0 0 chr4 21187243 21187322 -181141025 + MER5B DNA MER1_type 100 178 0 825 237 6 0 chr4 21188016 21188189 -181140158 - LTR33 LTR ERVL -4 517 344 225 363 39 0 chr4 21188352 21188454 -181139893 + L2 LINE L2 2247 2352 -962 461 270 57 52 chr4 21188705 21188916 -181139431 - L1ME3A LINE L1 -14 6156 5945 1452 219 42 26 chr4 21188965 21189348 -181138999 - L1MB8 LINE L1 -110 6068 5680 189 0 0 0 chr4 21189348 21189369 -181138978 + (TG)n Simple_repeat Simple_repeat 2 22 0 679 147 0 9 chr4 21189522 21189631 -181138716 + MLT1D LTR MaLR 58 165 -340 397 332 65 35 chr4 21189646 21189878 -181138469 + LTR33 LTR ERVL 11 249 -272 1836 219 70 65 chr4 21189887 21190543 -181137804 - L1MB8 LINE L1 -1225 4921 4263 294 103 0 0 chr4 21190644 21190683 -181137664 - THE1C LTR MaLR -336 39 1 262 235 153 41 chr4 21190755 21190925 -181137422 - Charlie8 DNA MER1_type -2153 264 76 277 308 83 0 chr4 21191070 21191190 -181137157 + MIR SINE MIR 100 229 -33 673 284 124 20 chr4 21191705 21192148 -181136199 - LTR33A LTR ERVL 0 523 35 344 343 47 24 chr4 21192430 21192599 -181135748 + MIR SINE MIR 65 237 -25 373 22 0 0 chr4 21193378 21193423 -181134924 + (TTA)n Simple_repeat Simple_repeat 1 180 0 2758 61 56 5 chr4 21193423 21193789 -181134558 - L1PA8 LINE L1 -18 6154 5767 554 303 87 80 chr4 21193908 21194494 -181133853 + L2 LINE L2 2730 3313 0 1972 55 63 0 chr4 21194559 21194814 -181133533 + L1P3 LINE L1 5441 5711 -443 291 363 27 0 chr4 21194900 21195046 -181133301 - L2 LINE L2 -12 3301 3152 192 261 87 0 chr4 21195447 21195516 -181132831 - MIR SINE MIR -71 191 117 400 348 53 18 chr4 21195995 21196222 -181132125 - MIR SINE MIR 0 262 28 268 317 197 7 chr4 21196707 21196849 -181131498 + MIR SINE MIR 21 189 -73 219 69 0 0 chr4 21196888 21196917 -181131430 + (TC)n Simple_repeat Simple_repeat 2 30 0 296 327 69 0 chr4 21197194 21197295 -181131052 - MIR3 SINE MIR -16 192 85 198 264 191 18 chr4 21198312 21198422 -181129925 - MIR SINE MIR -37 225 97 615 205 25 0 chr4 21201405 21201527 -181126820 + MLT1B LTR MaLR 1 125 -265 1141 29 0 7 chr4 21201527 21201666 -181126681 - L1PA5 LINE L1 -245 5910 5773 1760 48 0 4 chr4 21201666 21201882 -181126465 + L1PA5 LINE L1 5928 6145 -9 189 0 0 0 chr4 21201882 21201903 -181126444 + (TA)n Simple_repeat Simple_repeat 1 21 0 1281 220 7 22 chr4 21201913 21202190 -181126157 + MLT1B LTR MaLR 117 389 -1 2448 133 48 7 chr4 21202640 21203055 -181125292 - MSTB1 LTR MaLR 0 432 1 265 284 0 37 chr4 21203542 21203623 -181124724 - MER2 DNA MER2_type -1 344 267 727 148 16 0 chr4 21203768 21203896 -181124451 - MER2 DNA MER2_type -162 183 54 409 248 37 0 chr4 21203946 21204055 -181124292 - MER81 DNA DNA -1 113 1 787 189 54 49 chr4 21204390 21204575 -181123772 + MER5A DNA MER1_type 4 189 0 336 313 60 12 chr4 21204595 21204761 -181123586 - MER5B DNA MER1_type -3 175 2 22 0 0 0 chr4 21208471 21208493 -181119854 + AT_rich Low_complexity Low_complexity 1 22 0 228 241 80 0 chr4 21208558 21208627 -181119720 - MIR SINE MIR -63 145 69 1143 197 62 55 chr4 21209141 21209466 -181118881 + L1MA10 LINE L1 6005 6331 -3 1786 141 32 60 chr4 21209880 21210227 -181118120 - MER1B DNA MER1_type 0 337 1 1016 220 47 99 chr4 21210499 21210976 -181117371 - THE1C LTR MaLR 0 428 1 706 130 109 7 chr4 21210976 21211114 -181117233 - Tigger2 DNA MER2_type -275 2443 2292 268 196 0 0 chr4 21211140 21211186 -181117161 - Tigger2 DNA MER2_type -2672 46 1 239 329 26 0 chr4 21211823 21211899 -181116448 + L2 LINE L2 3182 3259 -54 21 36 0 0 chr4 21213003 21213031 -181115316 + AT_rich Low_complexity Low_complexity 1 28 0 432 292 23 8 chr4 21213066 21213196 -181115151 + MIR SINE MIR 110 241 -21 25 31 0 0 chr4 21213315 21213347 -181115000 + AT_rich Low_complexity Low_complexity 1 32 0 1882 172 3 0 chr4 21213423 21213726 -181114621 - AluSx SINE Alu -8 304 1 384 59 0 0 chr4 21213765 21213816 -181114531 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 309 347 47 24 chr4 21214063 21214360 -181113987 - HAL1b LINE L1 -673 675 372 21 36 0 0 chr4 21214392 21214420 -181113927 + AT_rich Low_complexity Low_complexity 1 28 0 934 247 59 52 chr4 21217664 21218089 -181110258 - MER69B DNA AcHobo -89 1137 710 235 286 133 19 chr4 21218393 21218498 -181109849 - MIR SINE MIR -110 152 36 2633 252 42 17 chr4 21220218 21221251 -181107096 - L1MC/D LINE L1 -743 5683 4657 428 175 21 0 chr4 21221306 21221403 -181106944 - L1M4 LINE L1 -1068 5078 4980 936 168 10 0 chr4 21221427 21221624 -181106723 - L1MA4 LINE L1 -11 6289 6091 3102 173 29 24 chr4 21221624 21222773 -181105574 + L1M1 LINE L1 4653 5793 -507 307 214 0 14 chr4 21222774 21222844 -181105503 - L1MC/D LINE L1 -4363 2063 1995 * 336 231 35 8 chr4 21222816 21222940 -181105407 - L1MC4 LINE L1 -1339 6983 1995 258 156 0 0 chr4 21222940 21222985 -181105362 + (TA)n Simple_repeat Simple_repeat 1 45 0 2048 257 62 21 chr4 21223115 21223874 -181104473 - L1MEc LINE L1 -1986 4229 3440 1339 242 47 85 chr4 21223877 21224621 -181103726 - L1MEc LINE L1 -4002 2394 1679 628 279 104 17 chr4 21224694 21225174 -181103173 - L1MEc LINE L1 -1741 4474 3953 * 911 242 56 78 chr4 21225170 21225616 -181102731 - L1MEc LINE L1 -3381 2834 2399 2599 167 82 34 chr4 21225631 21226374 -181101973 + LTR1B LTR ERV1 1 826 0 412 260 27 81 chr4 21226390 21226613 -181101734 - L1MEc LINE L1 -3985 2411 2201 783 231 117 36 chr4 21226615 21226896 -181101451 - L1MC3 LINE L1 -1419 6366 6063 202 182 36 0 chr4 21226955 21227010 -181101337 + (TA)n Simple_repeat Simple_repeat 1 57 0 1166 314 90 24 chr4 21227028 21228189 -181100158 - L1MEc LINE L1 -4331 2065 829 1651 135 0 4 chr4 21228917 21229154 -181099193 - AluSq SINE Alu -77 236 1 183 326 39 62 chr4 21229337 21229466 -181098881 + L2 LINE L2 2590 2715 -599 1280 229 83 47 chr4 21229682 21230044 -181098303 - MLT1B LTR MaLR -15 375 1 352 289 50 8 chr4 21230550 21230671 -181097676 + MLT1L LTR MaLR 141 266 -349 1743 180 44 0 chr4 21231052 21231369 -181096978 - MER44D DNA MER2_type 0 609 9 2008 131 0 13 chr4 21231412 21231725 -181096622 - AluSg SINE Alu -1 309 1 289 355 30 105 chr4 21231854 21232186 -181096161 + L2 LINE L2 2966 3272 0 3672 306 89 18 chr4 21232311 21233979 -181094368 - L2 LINE L2 -532 2782 996 528 155 17 43 chr4 21234137 21234253 -181094094 + L1MA4 LINE L1 5890 6002 -298 23 0 0 0 chr4 21234598 21234621 -181093726 + AT_rich Low_complexity Low_complexity 1 23 0 476 236 71 0 chr4 21235265 21235392 -181092955 + L1MA5 LINE L1 5953 6088 -212 2191 276 73 41 chr4 21235396 21236572 -181091775 - L1MDa LINE L1 -1773 4767 3554 1036 167 0 0 chr4 21236574 21236736 -181091611 - AluJb SINE Alu -9 303 142 7107 258 63 32 chr4 21236831 21239489 -181088858 - L1MDa LINE L1 -3041 3499 710 2019 157 40 0 chr4 21239489 21239839 -181088508 - THE1B LTR MaLR 0 364 1 7107 258 63 32 chr4 21239839 21240557 -181087790 - L1MDa LINE L1 -5830 710 16 311 164 100 64 chr4 21240793 21240903 -181087444 - MER110 LTR ERV1 0 491 378 638 316 26 7 chr4 21241003 21241275 -181087072 - MER110 LTR ERV1 0 491 215 185 254 16 79 chr4 21241969 21242032 -181086315 + L2 LINE L2 3199 3257 -15 338 282 0 13 chr4 21243097 21243175 -181085172 + MLT1H LTR MaLR 75 151 -398 437 227 49 47 chr4 21244068 21244227 -181084120 + MLT1H LTR MaLR 386 547 -8 343 362 71 21 chr4 21244460 21244742 -181083605 + MLT1K LTR MaLR 18 313 -275 371 287 64 19 chr4 21244799 21244956 -181083391 + MLT1K LTR MaLR 423 586 -2 238 183 0 50 chr4 21245458 21245518 -181082829 - LTR33A LTR ERVL -22 501 445 708 236 162 82 chr4 21245917 21246319 -181082028 - MLT2B1 LTR ERVL 0 520 87 414 211 256 0 chr4 21246447 21246580 -181081767 + MER33 DNA MER1_type 6 172 -152 1141 222 65 37 chr4 21246892 21247243 -181081104 + MLT1A1 LTR MaLR 1 361 -4 1362 86 111 82 chr4 21247243 21247538 -181080809 + AluSg SINE Alu 29 330 0 618 267 14 74 chr4 21247569 21247786 -181080561 + MLT-int LTR MaLR 811 1014 -721 2392 236 102 0 chr4 21247801 21248330 -181080017 + MLT1A1-int LTR MaLR 1153 1735 0 396 217 60 0 chr4 21248331 21248414 -181079933 + MLT1A1 LTR MaLR 2 89 -276 21 36 0 0 chr4 21250261 21250289 -181078058 + AT_rich Low_complexity Low_complexity 1 28 0 386 324 41 29 chr4 21250455 21250625 -181077722 - MIR SINE MIR -1 261 90 25 31 0 0 chr4 21250847 21250879 -181077468 + AT_rich Low_complexity Low_complexity 1 32 0 192 331 93 26 chr4 21251224 21251375 -181076972 + MIR SINE MIR 73 233 -29 22 35 0 0 chr4 21251680 21251709 -181076638 + AT_rich Low_complexity Low_complexity 1 29 0 2394 156 18 10 chr4 21253023 21253420 -181074927 + MSTA LTR MaLR 27 426 -2 236 389 159 0 chr4 21253607 21253764 -181074583 - L2 LINE L2 -75 3197 3016 210 71 0 0 chr4 21253843 21253871 -181074476 + (TTG)n Simple_repeat Simple_repeat 2 29 0 942 247 60 7 chr4 21255245 21255786 -181072561 + MLT1E1 LTR MaLR 1 631 -22 242 266 137 16 chr4 21255786 21255910 -181072437 + L1ME LINE L1 4272 4410 -1736 519 299 53 13 chr4 21255914 21256232 -181072115 + L1ME LINE L1 4488 4818 -1328 481 309 102 50 chr4 21256315 21257054 -181071293 + L1ME LINE L1 4907 5684 -478 333 248 9 44 chr4 21257337 21257450 -181070897 + GA-rich Low_complexity Low_complexity 2 110 0 7551 31 0 1 chr4 21257450 21258450 -181069897 + L1PA3 LINE L1 5157 6155 0 355 263 71 86 chr4 21258585 21258644 -181069703 - L1MEd LINE L1 -3642 2740 2682 1959 134 0 3 chr4 21258644 21258928 -181069419 - AluSx SINE Alu -20 292 10 215 30 0 30 chr4 21258929 21258962 -181069385 + (TTTTG)n Simple_repeat Simple_repeat 4 35 0 1633 152 70 7 chr4 21258969 21259239 -181069108 - AluSx SINE Alu -25 287 1 355 263 71 86 chr4 21259239 21259424 -181068923 - L1MEd LINE L1 -3706 2676 2490 436 230 144 66 chr4 21260196 21260453 -181067894 - LTR37B LTR ERV1 -181 287 11 360 300 144 15 chr4 21260535 21260805 -181067542 - L1MEd LINE L1 -4710 1674 1370 619 330 72 25 chr4 21260890 21261321 -181067026 - L1MEd LINE L1 -4963 1409 959 328 304 28 56 chr4 21261421 21261635 -181066712 - L1MEd LINE L1 -5636 736 529 395 321 108 47 chr4 21261911 21262123 -181066224 + HAL1 LINE L1 1676 1900 -607 25 31 0 0 chr4 21262261 21262293 -181066054 + AT_rich Low_complexity Low_complexity 1 32 0 317 106 0 0 chr4 21262308 21262355 -181065992 - MLT2A1 LTR ERVL -8 436 390 23 33 0 0 chr4 21262355 21262385 -181065962 + AT_rich Low_complexity Low_complexity 1 30 0 3088 68 5 2 chr4 21262406 21262804 -181065543 - MLT2A1 LTR ERVL -45 399 1 368 280 19 85 chr4 21262806 21263124 -181065223 + HAL1 LINE L1 2049 2345 -162 23 0 0 0 chr4 21263274 21263297 -181065050 + AT_rich Low_complexity Low_complexity 1 23 0 2040 143 40 27 chr4 21263811 21264181 -181064166 - THE1C LTR MaLR 0 375 1 4521 35 4 0 chr4 21265010 21265556 -181062791 - L1PA4 LINE L1 -1691 4455 3908 7742 26 5 0 chr4 21265556 21267240 -181061107 + L1PA4 LINE L1 4464 6152 -3 180 0 0 0 chr4 21267441 21267461 -181060886 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 22 0 0 0 chr4 21267719 21267741 -181060606 + AT_rich Low_complexity Low_complexity 1 22 0 184 273 61 0 chr4 21268122 21268188 -181060159 + L2 LINE L2 3229 3298 -15 1803 144 33 0 chr4 21269233 21269538 -181058809 + AluSg SINE Alu 1 314 0 1612 216 28 37 chr4 21270987 21271418 -181056929 - MSTC LTR MaLR 0 428 2 2086 133 7 0 chr4 21271509 21271810 -181056537 - AluSx SINE Alu -9 303 1 879 322 86 47 chr4 21271923 21272579 -181055768 + L2 LINE L2 2370 3061 -252 1585 163 31 0 chr4 21272605 21272862 -181055485 - AluSx SINE Alu -36 276 12 664 290 112 74 chr4 21273716 21274342 -181054005 + L2 LINE L2 2594 3239 -74 421 246 8 63 chr4 21274332 21274458 -181053889 - L2 LINE L2 -1 3312 3194 * 361 289 0 0 chr4 21274477 21274567 -181053780 + L2 LINE L2 3221 3310 -3 2630 81 2 81 chr4 21275316 21275725 -181052622 - MER51B LTR ERV1 0 377 1 317 316 11 0 chr4 21275726 21275821 -181052526 + MIR SINE MIR 150 245 -17 2188 86 0 43 chr4 21276330 21276634 -181051713 + AluY SINE Alu 1 291 -20 1977 180 11 6 chr4 21276842 21277203 -181051144 - MLT1A1 LTR MaLR 0 365 3 201 178 0 0 chr4 21277359 21277404 -181050943 + (CA)n Simple_repeat Simple_repeat 2 46 0 447 164 18 18 chr4 21278231 21278341 -181050006 + CT-rich Low_complexity Low_complexity 2 111 0 181 359 136 0 chr4 21278931 21279115 -181049232 + L2 LINE L2 2979 3187 -126 359 234 65 28 chr4 21280464 21280571 -181047776 + MIR SINE MIR 152 262 0 324 311 97 60 chr4 21280704 21281003 -181047344 - L2 LINE L2 -55 3258 2949 621 274 132 5 chr4 21281434 21281631 -181046716 + MIR SINE MIR 32 253 -9 260 304 36 18 chr4 21281696 21281808 -181046539 + MIR SINE MIR 138 251 -11 1752 134 106 3 chr4 21282089 21282373 -181045974 + AluSp SINE Alu 1 313 0 543 304 119 60 chr4 21282699 21282743 -181045604 - L2 LINE L2 0 3313 3273 796 224 293 36 chr4 21282743 21283374 -181044973 - LTR50 LTR ERVL 0 795 3 543 304 119 60 chr4 21283374 21283889 -181044458 - L2 LINE L2 -40 3273 2646 571 271 80 73 chr4 21283897 21284199 -181044148 + MER102a DNA MER1_type 27 330 0 266 138 62 15 chr4 21284682 21284747 -181043600 - MLT2B1 LTR ERVL -2 518 451 453 96 84 6 chr4 21284748 21284914 -181043433 + (TA)n Simple_repeat Simple_repeat 2 180 0 21 0 0 0 chr4 21284929 21284950 -181043397 + AT_rich Low_complexity Low_complexity 1 21 0 340 103 109 0 chr4 21284955 21285111 -181043236 + (TA)n Simple_repeat Simple_repeat 1 173 0 606 154 138 15 chr4 21285358 21285488 -181042859 - MLT1A1 LTR MaLR -218 147 2 766 159 53 36 chr4 21285497 21285670 -181042677 + MLT1A1 LTR MaLR 226 365 0 2258 110 51 25 chr4 21285787 21286142 -181042205 - THE1B LTR MaLR 0 364 1 2021 130 3 15 chr4 21286142 21286466 -181041881 - MER44D DNA MER2_type -9 600 11 315 207 12 61 chr4 21287187 21287269 -181041078 - MIR SINE MIR -19 243 166 1648 43 0 0 chr4 21287342 21287551 -181040796 - L1P LINE L1 -909 5237 5029 2941 37 0 0 chr4 21287551 21287900 -181040447 + L1PA5 LINE L1 5803 6152 -2 330 45 0 0 chr4 21288425 21288469 -181039878 + (TG)n Simple_repeat Simple_repeat 2 45 0 1540 201 7 3 chr4 21288469 21288753 -181039594 - AluJb SINE Alu -27 285 1 1108 212 0 0 chr4 21288817 21289015 -181039332 + Tigger3(Golem) DNA MER2_type 4 201 -2828 * 3498 142 32 14 chr4 21289008 21289672 -181038675 + Tigger3(Golem) DNA MER2_type 2353 3028 -1 3418 64 11 2 chr4 21289739 21290191 -181038156 - L1PA7 LINE L1 -5 6149 5694 239 83 28 0 chr4 21290191 21290227 -181038120 + L1PA7 LINE L1 5678 5714 -417 801 272 28 101 chr4 21292165 21292457 -181035890 - MLT1I LTR MaLR 0 409 158 2453 68 0 10 chr4 21292457 21292766 -181035581 + AluY SINE Alu 1 306 -5 801 272 28 101 chr4 21292766 21292910 -181035437 - MLT1I LTR MaLR -251 158 5 1618 166 3 11 chr4 21293032 21293316 -181035031 - Tigger3(Golem) DNA MER2_type -1 3028 2747 1065 287 226 6 chr4 21293608 21294131 -181034216 - L2 LINE L2 -316 2997 2365 948 127 27 7 chr4 21294193 21294343 -181034004 + L1PA15 LINE L1 6007 6159 -6 281 217 17 0 chr4 21294422 21294482 -181033865 + MER99 DNA DNA 2 62 -766 1432 175 79 10 chr4 21294482 21294601 -181033746 + AluSx SINE Alu 1 110 -202 234 62 0 0 chr4 21294601 21294633 -181033714 + (TAA)n Simple_repeat Simple_repeat 1 32 0 1432 175 79 10 chr4 21294633 21294761 -181033586 + AluSx SINE Alu 110 273 -39 1645 169 83 17 chr4 21294761 21295111 -181033236 - THE1C LTR MaLR -2 373 1 1432 175 79 10 chr4 21295111 21295153 -181033194 + AluSx SINE Alu 273 311 -1 257 186 0 0 chr4 21295152 21295195 -181033152 + MER99 DNA DNA 50 92 -736 * 2373 232 63 3 chr4 21295902 21296502 -181031845 + MER99 DNA DNA 192 827 -1 873 232 6 6 chr4 21296633 21296810 -181031537 + MER5A DNA MER1_type 4 180 -9 207 281 0 0 chr4 21297424 21297506 -181030841 + (TA)n Simple_repeat Simple_repeat 2 83 0 1977 131 0 0 chr4 21298247 21298514 -181029833 + AluSc SINE Alu 7 273 -36 183 42 0 0 chr4 21298521 21298545 -181029802 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 834 226 95 50 chr4 21299019 21299257 -181029090 + MER58B DNA MER1_type 37 291 -2129 629 305 9 27 chr4 21299257 21299480 -181028867 + MER20 DNA MER1_type 1 219 0 834 226 95 50 chr4 21299480 21299524 -181028823 + MER58B DNA MER1_type 291 332 -9 486 272 114 27 chr4 21300712 21300896 -181027451 + MIR SINE MIR 29 228 -34 226 306 0 31 chr4 21301242 21301340 -181027007 + T-rich Low_complexity Low_complexity 3 97 0 213 121 0 0 chr4 21301344 21301377 -181026970 + (TCC)n Simple_repeat Simple_repeat 3 35 0 235 200 170 16 chr4 21301935 21301992 -181026355 + MIR SINE MIR 20 67 -141 1604 279 56 28 chr4 21301992 21302601 -181025746 - MLT2E LTR ERVL 0 628 3 235 200 170 16 chr4 21302601 21302654 -181025693 + MIR SINE MIR 67 154 -54 475 223 0 0 chr4 21303804 21303907 -181024440 - MER58 DNA MER1_type 0 2420 2318 2367 96 3 0 chr4 21304094 21304427 -181023920 - pTR5 LTR ERV1 -2046 392 59 313 242 33 0 chr4 21304427 21304518 -181023829 - LTR30 LTR ERV1 -85 637 544 3160 143 47 33 chr4 21304522 21305315 -181023032 - pTR5 LTR ERV1 -417 2021 743 24 0 0 0 chr4 21305593 21305617 -181022730 + AT_rich Low_complexity Low_complexity 1 24 0 382 390 70 18 chr4 21305681 21306012 -181022335 - L2 LINE L2 0 3272 2925 263 329 129 50 chr4 21306143 21306423 -181021924 - L2 LINE L2 -460 2854 2553 2104 138 48 20 chr4 21307203 21307557 -181020790 - THE1B LTR MaLR 0 364 1 844 300 81 3 chr4 21308235 21308568 -181019779 + L2 LINE L2 2954 3312 -1 216 122 0 0 chr4 21309276 21309317 -181019030 + (TC)n Simple_repeat Simple_repeat 1 41 0 448 210 31 0 chr4 21309348 21309510 -181018837 + (TA)n Simple_repeat Simple_repeat 2 168 0 23 86 0 0 chr4 21310430 21310488 -181017859 + AT_rich Low_complexity Low_complexity 1 58 0 421 216 31 74 chr4 21310518 21310680 -181017667 - L2 LINE L2 0 3313 3159 264 197 26 26 chr4 21310695 21310771 -181017576 - MER116 DNA Mariner -1 79 4 1145 266 75 44 chr4 21311565 21312245 -181016102 - HAL1 LINE L1 -4 2503 1803 983 228 46 3 chr4 21312257 21312542 -181015805 - MER33 DNA MER1_type -6 318 22 300 175 18 0 chr4 21312591 21312648 -181015699 - HAL1 LINE L1 -917 1590 1533 376 298 73 49 chr4 21313182 21313387 -181014960 + MIR SINE MIR 32 241 -21 23 68 0 0 chr4 21314476 21314520 -181013827 + AT_rich Low_complexity Low_complexity 1 44 0 2093 310 32 22 chr4 21314520 21315523 -181012824 - L2 LINE L2 0 3313 2302 400 345 57 57 chr4 21315686 21315932 -181012415 + MIR SINE MIR 11 256 -6 420 164 0 0 chr4 21317275 21317342 -181011005 + AluJ/FLAM SINE Alu 2 68 -244 968 146 0 13 chr4 21317452 21317610 -181010737 + L1PA7 LINE L1 5986 6141 -13 3572 264 60 45 chr4 21317698 21319518 -181008829 + L1ME LINE L1 2205 4051 -2095 1473 226 41 62 chr4 21319530 21319860 -181008487 + L1ME LINE L1 4795 5131 -1035 4664 26 0 2 chr4 21319860 21320407 -181007940 + L1PA4 LINE L1 5610 6155 0 1473 226 41 62 chr4 21320407 21320975 -181007372 + L1ME LINE L1 5131 5673 -493 1926 214 33 70 chr4 21320982 21321500 -181006847 - MLT1D LTR MaLR -6 499 1 271 281 11 0 chr4 21321500 21321589 -181006758 + L1ME LINE L1 5670 5759 -407 1177 89 24 18 chr4 21321589 21321758 -181006589 - THE1C LTR MaLR -205 170 1 389 282 24 59 chr4 21321840 21322010 -181006337 + HERVL LTR ERVL 3468 3631 -2023 588 313 46 11 chr4 21322458 21322720 -181005627 + HERVL LTR ERVL 4323 4593 -1061 330 403 22 0 chr4 21323306 21323445 -181004902 + LTR33 LTR ERVL 86 227 -294 551 317 165 17 chr4 21323571 21323984 -181004363 - LTR33 LTR ERVL 0 521 48 265 273 163 66 chr4 21325223 21325424 -181002923 + MIR SINE MIR 36 252 -10 240 269 39 87 chr4 21326135 21326239 -181002108 + MLT1H1 LTR MaLR 140 238 -292 261 270 145 50 chr4 21326266 21326425 -181001922 + MLT1H1 LTR MaLR 382 555 0 3658 160 70 57 chr4 21326475 21327252 -181001095 - MER54B LTR ERVL 0 793 7 2133 134 111 28 chr4 21327498 21327893 -181000454 + MSTA LTR MaLR 1 428 0 1964 134 113 3 chr4 21327962 21328290 -181000057 - THE1B LTR MaLR 0 364 1 1806 131 136 60 chr4 21329700 21330097 -180998250 + MSTA LTR MaLR 2 428 0 1442 35 0 6 chr4 21330186 21330359 -180997988 - AluY SINE Alu -11 300 129 183 80 0 0 chr4 21330656 21330681 -180997666 + (TG)n Simple_repeat Simple_repeat 1 25 0 1604 239 92 10 chr4 21330687 21331088 -180997259 + MLT2B1 LTR ERVL 83 516 -4 868 253 59 10 chr4 21331093 21331398 -180996949 + HERVL-B1 LTR ERVL 2 321 -5333 * 3277 184 20 17 chr4 21331396 21331983 -180996364 + HERVL-B1 LTR ERVL 1151 1739 -4025 7464 185 17 18 chr4 21331987 21334724 -180993623 + HERVL-B1 LTR ERVL 2921 5757 -7 1204 251 27 13 chr4 21334724 21335023 -180993324 + MLT2B1 LTR ERVL 1 303 -217 21 0 0 0 chr4 21335080 21335101 -180993246 + AT_rich Low_complexity Low_complexity 1 21 0 274 119 24 0 chr4 21335227 21335269 -180993078 + MER4E LTR ERV1 654 696 -70 442 316 109 57 chr4 21335387 21335967 -180992380 + L1M4 LINE L1 3047 3656 -2490 21 36 0 0 chr4 21336449 21336477 -180991870 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr4 21336624 21336654 -180991693 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr4 21336722 21336751 -180991596 + AT_rich Low_complexity Low_complexity 1 29 0 246 304 173 24 chr4 21336791 21336959 -180991388 - MIR SINE MIR -48 214 22 950 278 160 29 chr4 21337784 21338370 -180989977 - MLT2F LTR ERVL 0 663 1 262 294 29 39 chr4 21338569 21338671 -180989676 + L3 LINE CR1 1471 1571 -6 2280 68 0 39 chr4 21339170 21339478 -180988869 + AluY SINE Alu 5 300 -11 284 83 21 0 chr4 21339735 21339783 -180988564 + (TG)n Simple_repeat Simple_repeat 2 50 0 270 378 52 7 chr4 21341162 21341297 -180987050 - MIR SINE MIR -98 164 24 23 33 0 0 chr4 21341637 21341667 -180986680 + AT_rich Low_complexity Low_complexity 1 30 0 241 202 0 135 chr4 21342147 21342251 -180986096 - L1MC4 LINE L1 -1339 6703 6614 225 178 0 0 chr4 21342270 21342315 -180986032 + (TA)n Simple_repeat Simple_repeat 1 45 0 25 51 0 0 chr4 21342352 21342391 -180985956 + AT_rich Low_complexity Low_complexity 1 39 0 194 327 0 0 chr4 21344191 21344246 -180984101 + L2 LINE L2 2589 2643 -671 240 279 15 0 chr4 21345033 21345101 -180983246 + GA-rich Low_complexity Low_complexity 3 71 0 190 342 56 94 chr4 21346135 21346369 -180981978 - L2 LINE L2 -47 3225 3001 23 108 0 0 chr4 21346617 21346710 -180981637 + AT_rich Low_complexity Low_complexity 1 93 0 513 289 141 16 chr4 21346972 21347276 -180981071 - MLT1I LTR MaLR -38 371 30 970 234 60 37 chr4 21347373 21347642 -180980705 - MLT2B1 LTR ERVL -244 276 2 1763 124 65 50 chr4 21347673 21348012 -180980335 - Tigger7 DNA MER2_type -1 2586 2243 661 192 294 0 chr4 21348010 21348187 -180980160 + Tigger7 DNA MER2_type 76 304 -2183 * 428 216 0 0 chr4 21348210 21348284 -180980063 - Tigger7 DNA MER2_type -265 74 1 212 194 0 0 chr4 21348987 21349023 -180979324 + (TA)n Simple_repeat Simple_repeat 2 37 0 469 184 0 0 chr4 21349041 21349117 -180979230 + AluSx SINE Alu 1 76 -236 5255 127 101 85 chr4 21349121 21350672 -180977675 - pTR5 LTR ERV1 -1 2437 743 1421 126 51 9 chr4 21350672 21350886 -180977461 + AluSx SINE Alu 73 295 -17 22 0 0 0 chr4 21350889 21350911 -180977436 + AT_rich Low_complexity Low_complexity 1 22 0 432 313 84 84 chr4 21350911 21351662 -180976685 - L1M4 LINE L1 -3240 2970 2220 263 241 0 0 chr4 21351692 21351746 -180976601 - Tigger5 DNA MER2_type -2269 54 1 405 292 7 45 chr4 21351764 21351918 -180976429 - HAL1 LINE L1 -1196 1311 1164 908 305 76 27 chr4 21353609 21354058 -180974289 + L2 LINE L2 2843 3313 0 313 172 0 0 chr4 21354141 21354199 -180974148 + Tigger4(Zombi) DNA MER2_type 1 58 -2673 237 33 0 0 chr4 21354199 21354229 -180974118 + (ATTG)n Simple_repeat Simple_repeat 2 31 0 2432 110 14 0 chr4 21354229 21354585 -180973762 - L1PB1 LINE L1 -10 6141 5781 212 100 25 0 chr4 21354585 21354625 -180973722 + (TA)n Simple_repeat Simple_repeat 1 41 0 198 103 0 0 chr4 21354624 21354653 -180973694 + (CA)n Simple_repeat Simple_repeat 2 30 0 * 2333 110 9 3 chr4 21354653 21354998 -180973349 - L1PB1 LINE L1 -360 5791 5445 4318 205 18 12 chr4 21355000 21356024 -180972323 + L1 LINE L1 3893 4922 -1224 403 304 141 48 chr4 21356403 21356758 -180971589 - L2 LINE L2 -5 3308 2921 437 295 0 22 chr4 21356884 21357023 -180971324 - MER45 DNA AcHobo -2 1579 1444 754 242 28 6 chr4 21357411 21357593 -180970754 - MER20 DNA MER1_type 0 219 34 258 274 226 0 chr4 21358095 21358201 -180970146 + L2 LINE L2 3184 3313 0 1605 186 94 3 chr4 21358210 21358517 -180969830 - MLT1A1 LTR MaLR 0 365 31 638 159 0 0 chr4 21359897 21360010 -180968337 + L1M4 LINE L1 4705 4817 -1329 2354 279 52 16 chr4 21360111 21361221 -180967126 - L1M4 LINE L1 -4644 1497 288 2143 123 53 17 chr4 21361221 21361580 -180966767 + THE1C LTR MaLR 1 372 -3 2354 279 52 16 chr4 21361580 21361733 -180966614 - L1M4 LINE L1 -5853 288 142 506 195 9 9 chr4 21361843 21361956 -180966391 + Tigger4(Zombi) DNA MER2_type 155 267 -2464 * 1288 147 37 0 chr4 21361955 21362173 -180966174 + Tigger4(Zombi) DNA MER2_type 2506 2731 0 1640 199 152 39 chr4 21362443 21362910 -180965437 + MLT2B1 LTR ERVL 1 520 0 456 194 0 31 chr4 21363028 21363126 -180965221 - MER94 DNA DNA -1 133 39 214 372 11 0 chr4 21363367 21363461 -180964886 + L2 LINE L2 2537 2631 -683 2876 110 30 0 chr4 21363464 21363864 -180964483 + MLT2A2 LTR ERVL 42 453 0 200 224 53 53 chr4 21364600 21364676 -180963671 + MIR SINE MIR 187 262 0 1076 114 24 0 chr4 21365125 21365291 -180963056 - MSTA LTR MaLR -258 170 1 212 274 24 36 chr4 21365296 21365380 -180962967 + L2 LINE L2 1611 1693 -1621 2183 151 22 6 chr4 21366060 21366418 -180961929 + THE1B LTR MaLR 1 364 0 10086 109 35 39 chr4 21366418 21368003 -180960344 + THE1B-int LTR MaLR 1 1580 0 2089 159 31 6 chr4 21368007 21368358 -180959989 + THE1B LTR MaLR 5 364 0 2194 133 6 11 chr4 21368468 21368820 -180959527 - Tigger7 DNA MER2_type 0 2487 2138 744 195 0 0 chr4 21368817 21368935 -180959412 - Tigger7 DNA MER2_type -615 118 1 * 404 280 15 38 chr4 21369327 21369459 -180958888 - MIR SINE MIR -74 188 60 1854 171 52 19 chr4 21369459 21369827 -180958520 + MLT2B1 LTR ERVL 1 380 -140 233 37 0 0 chr4 21369818 21369845 -180958502 + MLT2B1 LTR ERVL 489 515 0 * 234 268 31 52 chr4 21371127 21371224 -180957123 - MIR SINE MIR -86 176 82 244 353 46 46 chr4 21372067 21372240 -180956107 + L2 LINE L2 2417 2589 -725 15993 181 3 9 chr4 21372240 21375163 -180953184 + HERVH LTR ERV1 4660 7565 -148 21 0 0 0 chr4 21375269 21375290 -180953057 + AT_rich Low_complexity Low_complexity 1 21 0 206 32 32 0 chr4 21376143 21376174 -180952173 + (CAAAAA)n Simple_repeat Simple_repeat 4 35 0 495 317 73 19 chr4 21377051 21377256 -180951091 + MIR SINE MIR 24 239 -23 2552 62 0 0 chr4 21377564 21377868 -180950479 + AluY SINE Alu 1 304 -7 183 380 14 0 chr4 21378000 21378071 -180950276 + L2 LINE L2 3198 3269 -44 2371 90 0 0 chr4 21378347 21378646 -180949701 - AluSp SINE Alu -14 299 1 22 56 0 0 chr4 21380018 21380054 -180948293 + AT_rich Low_complexity Low_complexity 1 36 0 263 283 79 13 chr4 21380103 21380255 -180948092 - MER103 DNA DNA -1 165 4 216 0 0 0 chr4 21380634 21380658 -180947689 + (CA)n Simple_repeat Simple_repeat 1 24 0 21 36 0 0 chr4 21381264 21381292 -180947055 + AT_rich Low_complexity Low_complexity 1 28 0 1727 192 14 0 chr4 21383064 21383361 -180944986 - AluJb SINE Alu -11 301 1 257 248 248 46 chr4 21383476 21383629 -180944718 - MIR SINE MIR -36 226 43 2061 121 4 4 chr4 21384033 21384314 -180944033 + AluSx SINE Alu 1 281 -31 255 340 0 47 chr4 21384431 21384537 -180943810 - MIR SINE MIR -99 163 63 284 279 39 47 chr4 21385240 21385369 -180942978 + L2 LINE L2 3182 3309 -4 281 267 172 0 chr4 21385790 21385906 -180942441 + MIR SINE MIR 117 252 -10 262 259 24 12 chr4 21386167 21386252 -180942095 - MLT1L LTR MaLR -23 592 507 192 254 51 0 chr4 21387092 21387151 -180941196 - MIR SINE MIR -70 192 131 461 267 30 67 chr4 21387155 21387290 -180941057 + L2 LINE L2 3179 3308 -5 333 273 62 150 chr4 21387415 21387763 -180940584 + L2 LINE L2 2825 3119 -153 1262 181 96 63 chr4 21387763 21388095 -180940252 - MER2 DNA MER2_type 0 344 2 333 273 62 150 chr4 21388095 21388234 -180940113 + L2 LINE L2 3119 3269 -3 364 314 138 42 chr4 21388429 21388690 -180939657 + L2 LINE L2 2987 3272 0 316 280 0 40 chr4 21388853 21388928 -180939419 + MER91A DNA MER1_type 22 93 -103 288 0 0 0 chr4 21388961 21388993 -180939354 + (TA)n Simple_repeat Simple_repeat 2 33 0 261 0 0 0 chr4 21388993 21389022 -180939325 + (T)n Simple_repeat Simple_repeat 1 29 0 235 264 14 43 chr4 21389122 21389262 -180939085 + Charlie7 DNA MER1_type 2471 2606 -6 354 45 0 0 chr4 21389403 21389447 -180938900 + (TG)n Simple_repeat Simple_repeat 1 44 0 309 304 81 20 chr4 21389750 21389898 -180938449 + MIR SINE MIR 20 176 -86 485 170 10 30 chr4 21389899 21389999 -180938348 + FLAM_A SINE Alu 31 128 -14 2062 147 0 3 chr4 21391564 21391863 -180936484 + AluSx SINE Alu 3 300 -12 311 389 15 15 chr4 21392319 21392517 -180935830 + L3 LINE CR1 1094 1291 -286 27 0 0 0 chr4 21393234 21393261 -180935086 + AT_rich Low_complexity Low_complexity 1 27 0 27 29 0 0 chr4 21394672 21394706 -180933641 + AT_rich Low_complexity Low_complexity 1 34 0 2431 88 0 0 chr4 21395579 21395885 -180932462 - AluSp SINE Alu -7 306 1 21 57 0 0 chr4 21396775 21396810 -180931537 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr4 21397628 21397650 -180930697 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr4 21397957 21397979 -180930368 + AT_rich Low_complexity Low_complexity 1 22 0 222 278 0 0 chr4 21398075 21398129 -180930218 + (CA)n Simple_repeat Simple_repeat 1 54 0 28 29 0 0 chr4 21398676 21398711 -180929636 + AT_rich Low_complexity Low_complexity 1 35 0 190 255 64 0 chr4 21399882 21399929 -180928418 - L2 LINE L2 -2 3270 3221 21 36 0 0 chr4 21400532 21400560 -180927787 + AT_rich Low_complexity Low_complexity 1 28 0 210 267 107 69 chr4 21401580 21401711 -180926636 + L2 LINE L2 3178 3313 0 223 204 20 0 chr4 21401765 21401814 -180926533 + GA-rich Low_complexity Low_complexity 2 51 0 243 273 78 7 chr4 21401924 21402051 -180926296 + MLT1I LTR MaLR 22 168 -241 327 315 19 9 chr4 21402114 21402222 -180926125 + MLT1G1 LTR MaLR 246 354 -241 261 238 4 26 chr4 21402309 21402397 -180925950 + MLT1H1 LTR MaLR 491 584 -6 2188 100 7 0 chr4 21403089 21403414 -180924933 + AluSx SINE Alu 3 329 0 180 333 48 38 chr4 21404182 21404287 -180924060 + L2 LINE L2 2920 3025 -247 28 29 0 0 chr4 21404401 21404436 -180923911 + AT_rich Low_complexity Low_complexity 1 35 0 251 178 0 14 chr4 21404504 21404577 -180923770 + CT-rich Low_complexity Low_complexity 1 72 0 891 174 0 0 chr4 21404614 21404792 -180923555 + CT-rich Low_complexity Low_complexity 3 180 0 1383 188 29 11 chr4 21404798 21405070 -180923277 - AluJo SINE Alu -35 277 1 494 261 75 49 chr4 21405191 21405417 -180922930 - MIR SINE MIR -6 256 25 189 371 52 21 chr4 21405444 21405541 -180922806 - L2 LINE L2 -32 3281 3182 456 297 51 29 chr4 21405981 21406156 -180922191 + MIR SINE MIR 14 192 -70 2525 58 0 6 chr4 21407261 21407572 -180920775 - AluY SINE Alu -2 309 1 1465 209 3 17 chr4 21408404 21408700 -180919647 - AluJo SINE Alu -20 292 1 23 68 0 0 chr4 21409949 21409993 -180918354 + AT_rich Low_complexity Low_complexity 1 44 0 2228 119 3 7 chr4 21410003 21410313 -180918034 + AluSc SINE Alu 1 309 0 2458 173 9 2 chr4 21410630 21411051 -180917296 - MSTB LTR MaLR 0 426 3 1748 151 63 3 chr4 21411128 21411446 -180916901 - MER1B DNA MER1_type 0 337 1 298 326 118 7 chr4 21411626 21411761 -180916586 + MIR SINE MIR 1 150 -112 331 273 71 10 chr4 21411942 21412041 -180916306 - L2 LINE L2 -18 3295 3191 345 292 79 39 chr4 21412202 21412507 -180915840 + L1M4 LINE L1 5266 5582 -596 38 0 0 0 chr4 21412516 21412554 -180915793 + AT_rich Low_complexity Low_complexity 1 38 0 31 26 0 0 chr4 21414141 21414179 -180914168 + AT_rich Low_complexity Low_complexity 1 38 0 352 263 139 7 chr4 21415022 21415159 -180913188 + MIR SINE MIR 37 191 -71 230 246 18 0 chr4 21417149 21417206 -180911141 + L2 LINE L2 3256 3313 0 201 59 88 0 chr4 21417312 21417346 -180911001 + A-rich Low_complexity Low_complexity 2 38 0 302 257 51 105 chr4 21417829 21417982 -180910365 + MIR SINE MIR 16 158 -61 1516 142 150 0 chr4 21418392 21418672 -180909675 + AluSx SINE Alu 1 317 0 573 207 25 0 chr4 21419383 21419504 -180908843 + MER5A DNA MER1_type 1 124 -65 1531 142 40 98 chr4 21419665 21420011 -180908336 - MER4A LTR ERV1 0 664 339 311 292 10 10 chr4 21420489 21420585 -180907762 - MIR SINE MIR -50 212 117 222 302 0 16 chr4 21421345 21421408 -180906939 + L2 LINE L2 3203 3264 -8 796 205 49 19 chr4 21422063 21422268 -180906079 + L1MA8 LINE L1 6059 6269 -22 620 182 12 73 chr4 21422272 21422379 -180905968 + L1MA10 LINE L1 6170 6265 -69 331 66 279 0 chr4 21422379 21422440 -180905907 + MADE1 DNA Mariner 3 80 0 620 182 12 73 chr4 21422440 21422497 -180905850 + L1MA10 LINE L1 6265 6324 -10 305 285 32 32 chr4 21422527 21422650 -180905697 + CT-rich Low_complexity Low_complexity 5 127 0 216 0 0 0 chr4 21424258 21424282 -180904065 + (T)n Simple_repeat Simple_repeat 1 24 0 184 352 0 0 chr4 21424631 21424702 -180903645 + L2 LINE L2 2200 2270 -1044 21 57 0 0 chr4 21425203 21425238 -180903109 + AT_rich Low_complexity Low_complexity 1 35 0 251 226 0 65 chr4 21426368 21426430 -180901917 + MER4-int LTR ERV1 1105 1162 -5436 287 297 38 65 chr4 21426651 21426836 -180901511 - L2 LINE L2 0 3313 3134 21 89 0 0 chr4 21426862 21426918 -180901429 + AT_rich Low_complexity Low_complexity 1 56 0 203 316 0 0 chr4 21427490 21427569 -180900778 + T-rich Low_complexity Low_complexity 1 79 0 225 242 53 53 chr4 21429019 21429114 -180899233 - MIR SINE MIR 0 262 168 1880 200 38 2 chr4 21429124 21429544 -180898803 - L1MB7 LINE L1 0 6184 5750 248 290 130 20 chr4 21429647 21429747 -180898600 - L2 LINE L2 -500 2814 2704 2159 109 7 10 chr4 21429764 21430066 -180898281 + AluSg SINE Alu 5 305 -5 2428 83 0 13 chr4 21430070 21430382 -180897965 + AluY SINE Alu 3 310 -1 239 321 68 39 chr4 21430441 21430796 -180897551 - L2 LINE L2 -907 2407 2043 2726 168 34 57 chr4 21430821 21431315 -180897032 - MER34C LTR ERV1 0 585 81 212 0 36 0 chr4 21431315 21431343 -180897004 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2726 168 34 57 chr4 21431343 21431409 -180896938 - MER34C LTR ERV1 -504 81 37 4441 72 7 93 chr4 21431409 21431542 -180896805 - MER4A LTR ERV1 0 664 521 2058 137 3 0 chr4 21431542 21431841 -180896506 - AluSx SINE Alu -12 300 1 4441 72 7 93 chr4 21431841 21432434 -180895913 - MER4A LTR ERV1 -143 521 1 2726 168 34 57 chr4 21432434 21432467 -180895880 - MER34C LTR ERV1 -548 37 5 404 222 9 19 chr4 21432762 21432870 -180895477 + MIR SINE MIR 150 256 -6 279 314 157 0 chr4 21432904 21433006 -180895341 + MIR3 SINE MIR 68 185 -23 216 0 0 0 chr4 21433192 21433216 -180895131 + (T)n Simple_repeat Simple_repeat 1 24 0 23 54 0 0 chr4 21434975 21435012 -180893335 + AT_rich Low_complexity Low_complexity 1 37 0 27 62 0 0 chr4 21435126 21435174 -180893173 + AT_rich Low_complexity Low_complexity 1 48 0 2182 114 0 7 chr4 21435490 21435787 -180892560 - AluSx SINE Alu -17 295 1 206 265 41 61 chr4 21436275 21436373 -180891974 + MER5A DNA MER1_type 3 98 -91 231 323 0 0 chr4 21436435 21436497 -180891850 + tRNA-Ser(Sec) tRNA tRNA 1 62 -28 380 261 185 32 chr4 21437102 21437259 -180891088 - MER91A DNA MER1_type -14 182 2 461 89 41 27 chr4 21438101 21438247 -180890100 + (TA)n Simple_repeat Simple_repeat 1 148 0 1658 177 6 22 chr4 21440697 21441013 -180887334 - AluJb SINE Alu -1 311 1 189 0 0 0 chr4 21441312 21441333 -180887014 + (TCTG)n Simple_repeat Simple_repeat 2 22 0 183 326 0 0 chr4 21441563 21441609 -180886738 - L3 LINE CR1 -11 1566 1521 1904 166 0 10 chr4 21443202 21443498 -180884849 - AluJb SINE Alu -18 294 2 2217 113 0 0 chr4 21443523 21443816 -180884531 - AluSg SINE Alu -17 293 1 23 0 0 0 chr4 21443865 21443888 -180884459 + AT_rich Low_complexity Low_complexity 1 23 0 649 280 90 25 chr4 21444137 21444496 -180883851 - L1MC4a LINE L1 -360 5804 5518 1853 124 0 22 chr4 21444544 21444817 -180883530 - AluSx SINE Alu -45 267 1 210 207 35 0 chr4 21444892 21444950 -180883397 + T-rich Low_complexity Low_complexity 4 63 0 305 312 113 87 chr4 21445658 21446049 -180882298 - L2 LINE L2 -53 3219 2819 873 141 0 15 chr4 21446255 21446390 -180881957 - FLAM_C SINE Alu 0 133 1 2062 137 3 7 chr4 21446442 21446741 -180881606 - AluSx SINE Alu -14 298 1 281 253 91 30 chr4 21446779 21446878 -180881469 - L2 LINE L2 -7 3306 3202 346 165 25 0 chr4 21446931 21447010 -180881337 + CT-rich Low_complexity Low_complexity 3 83 0 2369 62 7 0 chr4 21447053 21447343 -180881004 - AluY SINE Alu -19 292 1 391 335 38 29 chr4 21448110 21448319 -180880028 - MIR SINE MIR -46 216 6 247 258 106 68 chr4 21449281 21449413 -180878934 + L2 LINE L2 3136 3272 0 1499 187 23 40 chr4 21449931 21450231 -180878116 - AluJo SINE Alu -17 295 1 877 164 8 0 chr4 21450297 21450431 -180877916 - AluJo SINE Alu -177 135 1 1268 240 25 21 chr4 21451170 21451495 -180876852 - MLT1A2 LTR MaLR -48 326 1 205 290 0 0 chr4 21451786 21451854 -180876493 - MIR SINE MIR -65 143 86 2476 81 0 3 chr4 21451867 21452177 -180876170 - AluSc SINE Alu 0 309 1 2204 91 0 20 chr4 21452386 21452684 -180875663 - AluY SINE Alu -19 292 1 1971 168 3 0 chr4 21454782 21455092 -180873255 - AluSx SINE Alu -1 311 1 3234 199 24 30 chr4 21455327 21455514 -180872833 + L1MB7 LINE L1 3153 3340 -2806 1573 187 28 11 chr4 21455514 21455647 -180872700 + AluJb SINE Alu 1 130 -182 2343 96 10 0 chr4 21455647 21455940 -180872407 + AluSx SINE Alu 1 296 -16 1573 187 28 11 chr4 21455940 21456090 -180872257 + AluJb SINE Alu 130 289 -23 3234 199 24 30 chr4 21456090 21456709 -180871638 + L1MB7 LINE L1 3340 3954 -2192 1359 185 37 63 chr4 21456718 21457127 -180871220 + MLT1C LTR MaLR 6 390 0 5061 145 30 1 chr4 21457127 21457941 -180870406 + L1MB7 LINE L1 5332 6168 -16 485 200 25 58 chr4 21458025 21458145 -180870202 - MER21B LTR ERV1 -364 499 384 441 76 0 0 chr4 21459242 21459308 -180869039 + (TCTA)n Simple_repeat Simple_repeat 1 66 0 559 128 186 0 chr4 21459416 21459518 -180868829 - AluSq/x SINE Alu -191 122 2 355 255 136 66 chr4 21459529 21459759 -180868588 - L1ME4a LINE L1 0 6121 5909 698 183 0 23 chr4 21459759 21459890 -180868457 + FLAM_A SINE Alu 1 128 -5 355 255 136 66 chr4 21459890 21460065 -180868282 - L1ME4a LINE L1 -212 5909 5681 1936 138 0 10 chr4 21460143 21460434 -180867913 - AluSx SINE Alu -24 288 1 2002 96 0 0 chr4 21460441 21460691 -180867656 - AluSc SINE Alu -21 288 39 324 140 0 35 chr4 21461128 21461185 -180867162 + AluJo/FLAM SINE Alu 78 132 -170 1091 189 177 4 chr4 21461188 21461442 -180866905 + AluJo SINE Alu 2 299 -3 273 98 0 0 chr4 21461450 21461491 -180866856 + (GGGGA)n Simple_repeat Simple_repeat 3 43 0 204 231 0 0 chr4 21461494 21461533 -180866814 + GA-rich Low_complexity Low_complexity 1 39 0 2316 115 0 0 chr4 21462134 21462438 -180865909 - AluSx SINE Alu -8 304 1 3441 144 91 125 chr4 21463382 21464296 -180864051 - MER21A LTR ERV1 -36 895 13 226 100 20 0 chr4 21464292 21464311 -180864036 - LTR66 LTR ERVL -169 441 424 * 348 24 0 0 chr4 21464311 21464352 -180863995 + (TG)n Simple_repeat Simple_repeat 2 42 0 226 100 20 0 chr4 21464352 21464382 -180863965 - LTR66 LTR ERVL -186 424 391 2163 115 3 0 chr4 21464742 21465030 -180863317 + AluSp SINE Alu 3 291 -22 602 255 37 30 chr4 21465256 21465459 -180862888 - MIR SINE MIR 0 262 59 1772 119 51 34 chr4 21466371 21466666 -180861681 + AluSx SINE Alu 1 300 -12 243 250 80 20 chr4 21467309 21467409 -180860938 - L2 LINE L2 -25 3247 3142 647 281 30 0 chr4 21467871 21468070 -180860277 - MIR SINE MIR 0 262 58 1396 171 150 34 chr4 21468105 21468299 -180860048 - MLT1A1 LTR MaLR 0 365 195 2250 114 0 13 chr4 21468299 21468607 -180859740 - AluSx SINE Alu -8 304 1 1396 171 150 34 chr4 21468607 21468739 -180859608 - MLT1A1 LTR MaLR -170 195 1 2724 140 17 9 chr4 21469040 21469462 -180858885 + MER61B LTR ERV1 1 425 0 976 214 0 0 chr4 21469585 21469763 -180858584 - FRAM SINE Alu -1 175 1 621 298 18 22 chr4 21469912 21470140 -180858207 - MIR SINE MIR -12 250 24 429 264 134 19 chr4 21472262 21472478 -180855869 - MIR SINE MIR -10 252 12 1289 183 87 21 chr4 21473385 21473674 -180854673 + MER58B DNA MER1_type 28 335 -6 573 183 127 31 chr4 21473900 21473913 -180854434 - L1MA10 LINE L1 0 6317 6307 1692 161 24 13 chr4 21473913 21474211 -180854136 + AluJb SINE Alu 1 301 -11 573 183 127 31 chr4 21474211 21474418 -180853929 - L1MA10 LINE L1 -10 6307 5919 2603 141 12 73 chr4 21474501 21474916 -180853431 - MER101 LTR ERV1 0 474 94 1535 142 78 25 chr4 21474916 21475197 -180853150 - AluJb SINE Alu -16 296 1 2603 141 12 73 chr4 21475197 21475286 -180853061 - MER101 LTR ERV1 -380 94 1 1935 153 10 7 chr4 21475487 21475787 -180852560 - AluSx SINE Alu -11 301 1 2162 115 0 0 chr4 21475842 21476129 -180852218 - AluSx SINE Alu -25 287 1 1475 126 25 107 chr4 21476138 21476456 -180851891 + MLT1B LTR MaLR 13 496 -91 1001 202 68 65 chr4 21476571 21476893 -180851454 + L1MD2 LINE L1 6027 6349 -10 2975 141 69 20 chr4 21477190 21477529 -180850818 + Tigger3(Golem) DNA MER2_type 1 378 -2651 1912 150 0 14 chr4 21477529 21477844 -180850503 + AluJb SINE Alu 1 311 0 2975 141 69 20 chr4 21477844 21478041 -180850306 + Tigger3(Golem) DNA MER2_type 378 564 -2465 * 9527 107 64 12 chr4 21478037 21478735 -180849612 + Tigger3(Golem) DNA MER2_type 1470 2130 -899 2193 122 0 0 chr4 21478735 21479031 -180849316 - AluJb SINE Alu -16 296 1 9527 107 64 12 chr4 21479031 21479815 -180848532 + Tigger3(Golem) DNA MER2_type 2130 3029 0 1164 196 0 14 chr4 21479894 21480108 -180848239 + AluJo SINE Alu 1 211 -101 1981 180 24 3 chr4 21481116 21481450 -180846897 - MER58B DNA MER1_type 0 341 1 2348 82 0 7 chr4 21481821 21482114 -180846233 - AluY SINE Alu -20 291 1 232 326 65 11 chr4 21486217 21486309 -180842038 - MIR SINE MIR -157 105 9 247 256 128 96 chr4 21487509 21487674 -180840673 + HAL1 LINE L1 1161 1319 -1188 2343 92 7 0 chr4 21487674 21487977 -180840370 + AluSx SINE Alu 1 305 -7 247 256 128 96 chr4 21487977 21488181 -180840166 + HAL1 LINE L1 1319 1550 -957 2352 119 0 0 chr4 21488181 21488493 -180839854 + AluSx SINE Alu 1 312 0 247 256 128 96 chr4 21488493 21488582 -180839765 + HAL1 LINE L1 1550 1635 -872 1573 103 121 40 chr4 21488673 21488945 -180839402 + AluSg1 SINE Alu 3 296 -13 2103 118 14 3 chr4 21488987 21489283 -180839064 + AluSq SINE Alu 1 299 -14 452 284 129 64 chr4 21489890 21490058 -180838289 - HAL1 LINE L1 -629 1878 1722 2318 98 0 0 chr4 21490058 21490355 -180837992 - AluSg SINE Alu -13 297 1 452 284 129 64 chr4 21490355 21490636 -180837711 - HAL1 LINE L1 -785 1722 1400 513 83 42 21 chr4 21490638 21490782 -180837565 + (TA)n Simple_repeat Simple_repeat 2 148 0 418 274 47 102 chr4 21490786 21491384 -180836963 - HAL1 LINE L1 -1133 1374 810 1676 131 3 53 chr4 21491910 21492192 -180836155 - AluSq SINE Alu -45 268 1 23 0 0 0 chr4 21492353 21492376 -180835971 + AT_rich Low_complexity Low_complexity 1 23 0 304 311 15 8 chr4 21492659 21492791 -180835556 + MER5B DNA MER1_type 2 134 -44 2174 103 7 3 chr4 21493329 21493631 -180834716 + AluSx SINE Alu 6 308 -4 1217 142 18 36 chr4 21494383 21494602 -180833745 - L1MA5 LINE L1 -85 6215 6001 234 0 0 0 chr4 21495103 21495129 -180833218 + (CA)n Simple_repeat Simple_repeat 2 27 0 1828 139 20 20 chr4 21495290 21495462 -180832885 - AluJb SINE Alu -18 294 120 2121 97 73 0 chr4 21495462 21495750 -180832597 + AluSx SINE Alu 1 309 -3 1828 139 20 20 chr4 21495750 21495871 -180832476 - AluJb SINE Alu -191 121 1 327 232 22 103 chr4 21496188 21496373 -180831974 + MIR3 SINE MIR 30 199 -9 512 120 0 11 chr4 21496946 21497038 -180831309 + (CA)n Simple_repeat Simple_repeat 2 92 0 332 212 61 38 chr4 21497290 21497405 -180830942 + L1MC4a LINE L1 5874 5994 -1814 694 203 0 15 chr4 21497405 21497538 -180830809 + FLAM_A SINE Alu 1 131 -2 332 212 61 38 chr4 21497538 21497554 -180830793 + L1MC4a LINE L1 5994 6008 -1800 259 260 50 44 chr4 21497718 21497899 -180830448 - L1ME4a LINE L1 -58 6063 5882 545 263 20 40 chr4 21497953 21498026 -180830321 - L1ME4a LINE L1 -225 5896 5823 2173 133 0 0 chr4 21498026 21498327 -180830020 - AluSx SINE Alu -11 301 1 545 263 20 40 chr4 21498327 21498451 -180829896 - L1ME4a LINE L1 -298 5823 5703 494 91 0 0 chr4 21498451 21498528 -180829819 + Alu SINE Alu 234 310 -2 24 32 0 0 chr4 21499024 21499055 -180829292 + AT_rich Low_complexity Low_complexity 1 31 0 365 118 9 173 chr4 21499400 21499510 -180828837 - LTR9 LTR ERV1 -83 529 438 1926 139 17 0 chr4 21500304 21500592 -180827755 + AluSx SINE Alu 1 293 -19 1803 150 59 3 chr4 21500664 21500950 -180827397 - AluJb SINE Alu -8 304 3 33 0 0 0 chr4 21501117 21501150 -180827197 + AT_rich Low_complexity Low_complexity 1 33 0 2019 73 0 19 chr4 21501150 21501409 -180826938 - AluY SINE Alu -9 302 49 562 77 13 0 chr4 21501409 21501487 -180826860 - MSTA LTR MaLR -349 79 1 212 274 24 36 chr4 21501492 21501576 -180826771 + L2 LINE L2 1611 1693 -1621 2164 154 22 6 chr4 21502256 21502614 -180825733 + THE1B LTR MaLR 1 364 0 10105 108 35 39 chr4 21502614 21504199 -180824148 + THE1B-int LTR MaLR 1 1580 0 2089 159 31 6 chr4 21504203 21504554 -180823793 + THE1B LTR MaLR 5 364 0 2216 131 6 11 chr4 21504664 21505016 -180823331 - Tigger7 DNA MER2_type 0 2587 2238 744 195 0 0 chr4 21505013 21505131 -180823216 - Tigger7 DNA MER2_type -615 118 1 * 404 280 15 38 chr4 21505523 21505655 -180822692 - MIR SINE MIR -74 188 60 1853 161 49 20 chr4 21505658 21506041 -180822306 + MLT2B1 LTR ERVL 4 464 0 234 268 31 52 chr4 21507323 21507420 -180820927 - MIR SINE MIR -86 176 82 244 353 46 46 chr4 21508262 21508435 -180819912 + L2 LINE L2 2417 2589 -725 16554 181 5 11 chr4 21508435 21511508 -180816839 + HERVH LTR ERV1 4660 7713 0 579 219 0 39 chr4 21511842 21511997 -180816350 + LTR7 LTR ERV1 302 450 0 398 307 17 28 chr4 21512401 21512577 -180815770 + L2 LINE L2 3117 3290 -23 662 290 81 36 chr4 21512595 21512840 -180815507 - MIR SINE MIR -1 261 4 1141 235 24 8 chr4 21513048 21513299 -180815048 - AluJo SINE Alu -57 255 1 24 67 0 0 chr4 21513908 21513953 -180814394 + AT_rich Low_complexity Low_complexity 1 45 0 480 285 181 14 chr4 21514503 21514724 -180813623 + MIR SINE MIR 4 261 -1 2016 107 7 0 chr4 21515213 21515484 -180812863 + AluSq SINE Alu 38 310 -3 367 294 14 41 chr4 21515779 21515925 -180812422 + L1ME LINE L1 5518 5659 -462 420 223 48 0 chr4 21516592 21516695 -180811652 + MIR SINE MIR 82 189 -73 453 303 25 0 chr4 21516881 21517000 -180811347 - LTR16A LTR ERVL -88 362 241 4037 171 23 8 chr4 21517532 21518236 -180810111 - MER72 LTR ERV1 0 722 9 406 139 14 14 chr4 21518664 21518736 -180809611 + AluS SINE Alu 3 74 -237 2672 205 8 17 chr4 21518760 21519286 -180809061 - Tigger3b DNA MER2_type -703 528 8 27 62 0 0 chr4 21519754 21519802 -180808545 + AT_rich Low_complexity Low_complexity 1 48 0 337 293 98 46 chr4 21520198 21520505 -180807842 + L1M4 LINE L1 3166 3488 -2658 198 0 0 0 chr4 21520853 21520875 -180807472 + (T)n Simple_repeat Simple_repeat 1 22 0 420 323 35 28 chr4 21521106 21521360 -180806987 + L1M4 LINE L1 3589 3844 -2302 208 196 36 0 chr4 21521361 21521417 -180806930 + (TAGA)n Simple_repeat Simple_repeat 3 60 0 230 264 184 24 chr4 21521428 21521500 -180806847 + L1M4 LINE L1 3859 3918 -2228 1365 241 22 17 chr4 21521500 21521857 -180806490 + MLT1A1 LTR MaLR 3 361 -4 230 264 184 24 chr4 21521857 21521996 -180806351 + L1M4 LINE L1 3918 4104 -2042 242 333 0 11 chr4 21522756 21522843 -180805504 + GA-rich Low_complexity Low_complexity 3 88 0 648 316 53 19 chr4 21523139 21523550 -180804797 - L1ME LINE L1 -417 5822 5398 320 315 98 33 chr4 21523553 21524004 -180804343 - L1ME LINE L1 -3265 2950 2471 349 271 113 30 chr4 21524236 21524439 -180803908 - L1ME LINE L1 -4144 2252 2033 288 0 0 0 chr4 21524512 21524544 -180803803 + (TC)n Simple_repeat Simple_repeat 1 32 0 35 24 0 0 chr4 21524979 21525021 -180803326 + AT_rich Low_complexity Low_complexity 1 42 0 369 329 27 27 chr4 21525040 21525162 -180803185 + MIR SINE MIR 19 143 -119 276 30 0 0 chr4 21525162 21525195 -180803152 + (TAA)n Simple_repeat Simple_repeat 3 35 0 369 329 27 27 chr4 21525195 21525218 -180803129 + MIR SINE MIR 142 164 -98 2409 116 50 31 chr4 21525463 21525885 -180802462 - MER57B LTR ERV1 0 434 5 301 295 9 0 chr4 21525889 21525994 -180802353 - L1ME LINE L1 -5308 897 792 487 372 26 50 chr4 21526236 21526618 -180801729 - L1ME LINE L1 -5746 459 87 828 264 98 37 chr4 21528811 21529159 -180799188 - L2 LINE L2 -56 3257 2889 658 313 48 46 chr4 21529156 21529407 -180798940 - L2 LINE L2 -861 2453 2199 * 225 0 0 0 chr4 21529407 21529432 -180798915 + (TG)n Simple_repeat Simple_repeat 2 26 0 658 313 48 46 chr4 21529432 21529531 -180798816 - L2 LINE L2 -1115 2199 2102 650 273 18 67 chr4 21529532 21529862 -180798485 + Charlie2 DNA MER1_type 9 322 -2540 592 264 124 8 chr4 21529869 21530119 -180798228 + Charlie2 DNA MER1_type 1870 2148 -714 695 240 77 139 chr4 21530130 21530647 -180797700 - L2 LINE L2 -1794 1520 1036 14645 167 19 11 chr4 21530740 21532478 -180795869 - L1MA3 LINE L1 0 7724 6002 2806 77 40 64 chr4 21532478 21532564 -180795783 - MLT2A1 LTR ERVL 0 444 357 207 0 0 0 chr4 21532564 21532587 -180795760 + (TA)n Simple_repeat Simple_repeat 2 24 0 2806 77 40 64 chr4 21532587 21532955 -180795392 - MLT2A1 LTR ERVL -87 357 1 14645 167 19 11 chr4 21532955 21536913 -180791434 - L1MA3 LINE L1 -1722 6002 1977 461 314 81 23 chr4 21536978 21537150 -180791197 + MIR SINE MIR 81 262 0 192 320 0 0 chr4 21537342 21537392 -180790955 - L2 LINE L2 -245 3027 2978 1693 194 3 3 chr4 21537482 21537776 -180790571 + AluJb SINE Alu 1 294 -18 21 36 0 0 chr4 21537781 21537809 -180790538 + AT_rich Low_complexity Low_complexity 1 28 0 1682 229 62 33 chr4 21538723 21539208 -180789139 + MLT1D LTR MaLR 5 503 -2 353 200 64 91 chr4 21540596 21540706 -180787641 - MLT1H LTR MaLR -27 522 409 904 269 9 0 chr4 21541033 21541249 -180787098 + MER8 DNA MER2_type 1 218 -21 1147 224 107 68 chr4 21542083 21542829 -180785518 + Zaphod DNA AcHobo 544 1318 -2713 1139 83 7 0 chr4 21542877 21543021 -180785326 - AluSp SINE Alu -168 145 1 1187 236 89 126 chr4 21543024 21543431 -180784916 + Zaphod DNA AcHobo 1545 1965 -2066 2127 112 0 3 chr4 21543431 21543740 -180784607 + AluY SINE Alu 1 308 0 1187 236 89 126 chr4 21543740 21544286 -180784061 + Zaphod DNA AcHobo 1965 2453 -1578 2430 72 0 0 chr4 21544286 21544579 -180783768 + AluSp SINE Alu 1 293 -20 1187 236 89 126 chr4 21544579 21544768 -180783579 + Zaphod DNA AcHobo 2453 2647 -1384 297 288 75 14 chr4 21544806 21544952 -180783395 + Zaphod DNA AcHobo 3005 3159 -872 547 109 16 78 chr4 21544952 21545080 -180783267 - L1MB8 LINE L1 0 6178 6059 2376 90 0 7 chr4 21545088 21545398 -180782949 - AluSp SINE Alu -5 308 1 3680 176 60 41 chr4 21545411 21546241 -180782106 - L1MB7 LINE L1 -7 6177 5332 1355 184 20 44 chr4 21546261 21546554 -180781793 - AluJo SINE Alu -26 286 1 1612 232 106 23 chr4 21546574 21547307 -180781040 + Zaphod DNA AcHobo 3150 3943 -88 24 53 0 0 chr4 21547307 21547345 -180781002 + AT_rich Low_complexity Low_complexity 1 38 0 959 284 113 11 chr4 21548345 21548715 -180779632 + MLT1I LTR MaLR 2 409 0 197 176 0 20 chr4 21549522 21549573 -180778774 + (TA)n Simple_repeat Simple_repeat 2 51 0 402 247 10 0 chr4 21550278 21550375 -180777972 - L1MD2 LINE L1 -14 6345 6248 383 232 24 0 chr4 21550431 21550513 -180777834 + MER5B DNA MER1_type 2 85 -93 1232 249 76 32 chr4 21550525 21550935 -180777412 + MLT2B1 LTR ERVL 1 428 -92 30 97 0 0 chr4 21551004 21551097 -180777250 + AT_rich Low_complexity Low_complexity 1 93 0 235 191 29 15 chr4 21551101 21551169 -180777178 + MLT2A1 LTR ERVL 368 436 -8 253 299 30 0 chr4 21551173 21551240 -180777107 + MER5B DNA MER1_type 103 171 -7 300 102 0 0 chr4 21551286 21551335 -180777012 + (TG)n Simple_repeat Simple_repeat 2 50 0 324 260 73 0 chr4 21551983 21552079 -180776268 - MLT1J2 LTR MaLR -323 127 25 756 252 128 4 chr4 21552515 21552741 -180775606 - MIR SINE MIR -4 258 5 472 242 67 0 chr4 21552777 21552897 -180775450 - L1MD2 LINE L1 -16 6343 6216 2513 243 23 17 chr4 21552964 21553609 -180774738 - L1MD2 LINE L1 -279 6080 5432 243 322 34 35 chr4 21553662 21553853 -180774494 + MIR SINE MIR 34 222 -40 1155 179 40 10 chr4 21553891 21554056 -180774291 - AluJb SINE Alu -17 295 121 243 0 0 0 chr4 21554056 21554083 -180774264 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1155 179 40 10 chr4 21554083 21554118 -180774229 - AluJb SINE Alu -191 121 89 322 302 24 8 chr4 21554335 21554461 -180773886 - MIR3 SINE MIR -5 203 76 1164 263 76 3 chr4 21555057 21555251 -180773096 - L1MD2 LINE L1 -21 6338 6160 231 36 0 0 chr4 21555251 21555279 -180773068 + (TG)n Simple_repeat Simple_repeat 2 29 0 1164 263 76 3 chr4 21555279 21555453 -180772894 - L1MD2 LINE L1 -199 6160 5943 1647 134 46 31 chr4 21555538 21555799 -180772548 - AluSx SINE Alu -6 306 42 2848 190 48 17 chr4 21555801 21556582 -180771765 - L1MDa LINE L1 -3819 2721 1917 1375 246 33 33 chr4 21556579 21556978 -180771369 - L1MDa LINE L1 -5359 1184 786 * 291 289 117 0 chr4 21557159 21557287 -180771060 - L1MDa LINE L1 -6319 221 79 194 197 43 128 chr4 21557327 21557444 -180770903 - MIR SINE MIR -32 230 124 620 249 122 33 chr4 21558274 21558487 -180769860 + MIR SINE MIR 31 262 0 181 138 0 0 chr4 21558480 21558509 -180769838 - MIR SINE MIR -108 154 126 * 1112 229 62 43 chr4 21558819 21559190 -180769157 + MER58D DNA MER1_type 1 378 -8 615 341 67 5 chr4 21559975 21560198 -180768149 + MIR SINE MIR 26 262 0 254 308 84 42 chr4 21560198 21560341 -180768006 - MIR3 SINE MIR -17 191 43 212 313 40 10 chr4 21560678 21560777 -180767570 - MIR SINE MIR -3 259 158 776 246 11 11 chr4 21561129 21561316 -180767031 - MER5A DNA MER1_type -1 188 2 242 281 18 18 chr4 21561563 21561620 -180766727 + MIR SINE MIR 30 86 -122 23 0 0 0 chr4 21562759 21562782 -180765565 + AT_rich Low_complexity Low_complexity 1 23 0 181 171 171 0 chr4 21563409 21563444 -180764903 - L2 LINE L2 -31 3282 3242 240 100 0 0 chr4 21564697 21564737 -180763610 + (CGG)n Simple_repeat Simple_repeat 2 41 0 21 0 0 0 chr4 21569460 21569481 -180758866 + AT_rich Low_complexity Low_complexity 1 21 0 222 233 192 0 chr4 21570322 21570395 -180757952 - MER5A DNA MER1_type -77 112 26 24 67 0 0 chr4 21571068 21571113 -180757234 + AT_rich Low_complexity Low_complexity 1 45 0 25 31 0 0 chr4 21571550 21571582 -180756765 + AT_rich Low_complexity Low_complexity 1 32 0 23 33 0 0 chr4 21572714 21572744 -180755603 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr4 21573159 21573187 -180755160 + AT_rich Low_complexity Low_complexity 1 28 0 295 345 18 0 chr4 21573556 21573669 -180754678 + CT-rich Low_complexity Low_complexity 5 119 0 340 302 124 7 chr4 21576348 21576517 -180751830 + MIR SINE MIR 66 252 -10 24 53 0 0 chr4 21576872 21576910 -180751437 + AT_rich Low_complexity Low_complexity 1 38 0 22 35 0 0 chr4 21577934 21577963 -180750384 + AT_rich Low_complexity Low_complexity 1 29 0 300 315 28 0 chr4 21578681 21578789 -180749558 + MIR SINE MIR 128 238 -24 286 314 132 66 chr4 21579344 21579678 -180748669 - L2 LINE L2 -36 3236 2881 450 347 139 24 chr4 21580179 21580467 -180747880 - L3 LINE CR1 -15 1562 1242 347 132 59 7 chr4 21584056 21584208 -180744139 + (TA)n Simple_repeat Simple_repeat 1 160 0 423 250 23 17 chr4 21585898 21586070 -180742277 - L1ME4a LINE L1 0 6121 5949 215 290 14 14 chr4 21586109 21586178 -180742169 + L2 LINE L2 3203 3271 -1 254 348 25 8 chr4 21587966 21588084 -180740263 + MIR SINE MIR 52 171 -91 32 0 0 0 chr4 21588691 21588723 -180739624 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr4 21589055 21589076 -180739271 + AT_rich Low_complexity Low_complexity 1 21 0 35 0 0 0 chr4 21590059 21590094 -180738253 + AT_rich Low_complexity Low_complexity 1 35 0 700 223 13 6 chr4 21590428 21590585 -180737762 + Tigger3(Golem) DNA MER2_type 128 285 -2744 503 148 159 0 chr4 21590687 21590775 -180737572 - AluJb SINE Alu -208 104 3 2502 53 0 28 chr4 21590960 21591280 -180737067 - AluY SINE Alu 0 311 1 1939 136 14 0 chr4 21591706 21591992 -180736355 - AluSx SINE Alu -22 290 1 210 118 0 0 chr4 21592313 21592347 -180736000 + (A)n Simple_repeat Simple_repeat 1 34 0 839 194 0 0 chr4 21592499 21592667 -180735680 + AluJb SINE Alu 138 305 0 2000 122 37 0 chr4 21592683 21592978 -180735369 - AluSx SINE Alu -6 306 1 223 229 76 28 chr4 21593130 21593307 -180735040 - MIR SINE MIR -12 250 20 380 99 254 0 chr4 21593587 21593658 -180734689 + AluJb SINE Alu 213 301 -1 2034 134 0 0 chr4 21593745 21594057 -180734290 + AluSq SINE Alu 1 312 0 897 220 5 0 chr4 21594330 21594521 -180733826 + L1PBa LINE L1 6 197 -6666 * 9063 156 46 4 chr4 21594518 21595844 -180732503 + L1PBa LINE L1 1392 2661 -4201 180 0 0 0 chr4 21595844 21595864 -180732483 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 9063 156 46 4 chr4 21595864 21597285 -180731062 + L1PBa LINE L1 2661 4258 -2604 476 163 38 3 chr4 21647482 21647586 -180680761 - L1MC2 LINE L1 0 6333 6226 193 262 0 0 chr4 21647605 21647647 -180680700 - L3 LINE CR1 -480 1097 1056 40 37 0 0 chr4 21648880 21648934 -180679413 + AT_rich Low_complexity Low_complexity 1 54 0 25 65 0 0 chr4 21649007 21649053 -180679294 + AT_rich Low_complexity Low_complexity 1 46 0 744 262 37 0 chr4 21649121 21649308 -180679039 + MIR SINE MIR 32 225 -37 408 353 140 39 chr4 21649986 21650558 -180677789 - L2 LINE L2 -618 2696 2067 456 252 129 7 chr4 21651497 21651652 -180676695 + MIR SINE MIR 83 256 -6 35 41 0 0 chr4 21651708 21651757 -180676590 + AT_rich Low_complexity Low_complexity 1 49 0 180 322 35 35 chr4 21651941 21652028 -180676319 - MIR SINE MIR -156 106 20 22 56 0 0 chr4 21652689 21652725 -180675622 + AT_rich Low_complexity Low_complexity 1 36 0 213 65 0 0 chr4 21653397 21653428 -180674919 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 180 77 0 0 chr4 21653676 21653702 -180674645 + (CAAAAA)n Simple_repeat Simple_repeat 3 28 0 427 289 223 9 chr4 21654123 21654334 -180674013 + MIR SINE MIR 7 262 0 32 0 0 0 chr4 21655207 21655239 -180673108 + AT_rich Low_complexity Low_complexity 1 32 0 1144 264 53 52 chr4 21655483 21656345 -180672002 + L1ME LINE L1 4888 5759 -411 6469 84 10 37 chr4 21657670 21658840 -180669507 - L1PA11 LINE L1 -8 6166 5029 2420 76 6 22 chr4 21658840 21659155 -180669192 - AluSx SINE Alu -2 310 1 6469 84 10 37 chr4 21659155 21659772 -180668575 - L1PA11 LINE L1 -1145 5029 4397 506 280 33 22 chr4 21659914 21660096 -180668251 - MIR SINE MIR -64 198 15 434 296 43 37 chr4 21660149 21660311 -180668036 - MIR SINE MIR -93 169 7 180 154 0 0 chr4 21660319 21660345 -180668002 + L2 LINE L2 3263 3288 -25 709 199 11 11 chr4 21661249 21661425 -180666922 - L1MB7 LINE L1 -1 6183 6008 264 260 65 0 chr4 21661428 21661505 -180666842 - L1M4 LINE L1 -1242 5140 5059 746 253 12 8 chr4 21661512 21661757 -180666590 - L1M4 LINE L1 -1437 4945 4700 * 1812 234 111 61 chr4 21661726 21663641 -180664706 - L1M4 LINE L1 -3143 3239 1221 2502 59 0 0 chr4 21663731 21664035 -180664312 + AluY SINE Alu 1 304 -7 296 166 0 70 chr4 21664337 21664428 -180663919 - MIR SINE MIR -23 185 106 1472 182 101 46 chr4 21664746 21665114 -180663233 - MLT1B LTR MaLR 0 390 3 232 328 39 42 chr4 21665605 21665741 -180662606 + MIR SINE MIR 14 153 -55 183 156 0 0 chr4 21666019 21666051 -180662296 + (TA)n Simple_repeat Simple_repeat 2 33 0 229 300 0 0 chr4 21666051 21666141 -180662206 - L1MC4 LINE L1 -1339 6703 6614 1904 100 8 0 chr4 21666148 21666397 -180661950 - AluSc SINE Alu -36 273 23 189 296 93 68 chr4 21666398 21666678 -180661669 + L2 LINE L2 2946 3232 -81 31 26 0 0 chr4 21667873 21667911 -180660436 + AT_rich Low_complexity Low_complexity 1 38 0 475 338 48 13 chr4 21668095 21668269 -180660078 + MIR SINE MIR 21 206 -56 387 0 0 0 chr4 21668269 21668312 -180660035 + (TG)n Simple_repeat Simple_repeat 2 44 0 475 338 48 13 chr4 21668312 21668365 -180659982 + MIR SINE MIR 206 256 -6 243 270 48 0 chr4 21668982 21669045 -180659302 - L2 LINE L2 0 3313 3248 25 0 0 0 chr4 21669076 21669101 -180659246 + AT_rich Low_complexity Low_complexity 1 25 0 261 295 124 0 chr4 21669116 21669221 -180659126 - MIR SINE MIR -50 212 95 277 207 24 12 chr4 21669225 21669307 -180659040 + GA-rich Low_complexity Low_complexity 3 85 0 1451 234 39 12 chr4 21669309 21669642 -180658705 + MLT1A2 LTR MaLR 33 374 0 283 159 0 58 chr4 21671049 21671118 -180657229 + MER116 DNA Mariner 11 75 -5 358 291 250 16 chr4 21671130 21671446 -180656901 - L2 LINE L2 -94 3219 2830 28 0 0 0 chr4 21672026 21672054 -180656293 + AT_rich Low_complexity Low_complexity 1 28 0 229 147 0 0 chr4 21673932 21673993 -180654354 + Alu SINE Alu 247 307 0 372 269 65 0 chr4 21674660 21674753 -180653594 + L2 LINE L2 3142 3240 -32 439 322 71 0 chr4 21675412 21675595 -180652752 - MIR SINE MIR -62 200 5 536 310 132 53 chr4 21677992 21678530 -180649817 - L2 LINE L2 -1 3312 2734 252 0 0 0 chr4 21679981 21680009 -180648338 + (TTTTTA)n Simple_repeat Simple_repeat 2 29 0 201 74 0 0 chr4 21680537 21680564 -180647783 + (TC)n Simple_repeat Simple_repeat 2 28 0 201 197 0 0 chr4 21680563 21680629 -180647718 + (TG)n Simple_repeat Simple_repeat 1 66 0 213 65 0 0 chr4 21680662 21680693 -180647654 + (GGAA)n Simple_repeat Simple_repeat 2 32 0 21 0 0 0 chr4 21681124 21681145 -180647202 + AT_rich Low_complexity Low_complexity 1 21 0 2300 92 7 3 chr4 21682806 21683112 -180645235 + AluSp SINE Alu 1 307 -6 197 402 10 0 chr4 21683351 21683448 -180644899 - L2 LINE L2 -666 2648 2551 312 281 96 15 chr4 21683607 21683742 -180644605 - L1ME LINE L1 -336 5785 5640 187 295 144 22 chr4 21683887 21684026 -180644321 - L2 LINE L2 -11 3302 3147 197 200 0 0 chr4 21684594 21684634 -180643713 - L2 LINE L2 -20 3252 3213 785 284 18 0 chr4 21685208 21685426 -180642921 + MER58A DNA MER1_type 3 224 0 385 230 11 11 chr4 21685564 21685651 -180642696 + MIR SINE MIR 165 251 -11 2076 268 73 39 chr4 21685662 21685933 -180642414 + L2 LINE L2 2170 2430 -883 1561 204 3 3 chr4 21685933 21686222 -180642125 + AluJb SINE Alu 1 289 -23 2529 67 0 10 chr4 21686231 21686544 -180641803 + AluY SINE Alu 1 310 -1 2076 268 73 39 chr4 21686544 21686835 -180641512 + L2 LINE L2 2437 2717 -596 2216 129 25 25 chr4 21686835 21687199 -180641148 - THE1B LTR MaLR 0 364 1 2076 268 73 39 chr4 21687199 21687715 -180640632 + L2 LINE L2 2717 3309 -4 1987 184 54 31 chr4 21687843 21688289 -180640058 - MLT1C LTR MaLR 0 467 12 279 360 117 9 chr4 21688392 21688503 -180639844 - L2 LINE L2 -16 3256 3134 374 114 14 0 chr4 21690085 21690155 -180638192 + (TC)n Simple_repeat Simple_repeat 2 72 0 21 36 0 0 chr4 21690537 21690565 -180637782 + AT_rich Low_complexity Low_complexity 1 28 0 2482 59 0 16 chr4 21690838 21691144 -180637203 + AluY SINE Alu 1 301 -10 243 0 0 0 chr4 21692183 21692210 -180636137 + (A)n Simple_repeat Simple_repeat 1 27 0 213 267 44 0 chr4 21692265 21692310 -180636037 - L2 LINE L2 -23 3290 3244 189 346 0 0 chr4 21694381 21694433 -180633914 + MIR SINE MIR 49 100 -162 315 261 134 28 chr4 21694593 21694735 -180633612 - L3b LINE CR1 -248 1335 1179 1789 147 3 64 chr4 21696907 21697221 -180631126 - AluSx SINE Alu -17 295 1 2280 104 0 0 chr4 21697238 21697536 -180630811 - AluSc SINE Alu -11 298 1 33 56 0 0 chr4 21697657 21697711 -180630636 + AT_rich Low_complexity Low_complexity 1 54 0 2340 94 7 0 chr4 21698000 21698307 -180630040 - AluSg SINE Alu -1 309 1 195 213 85 0 chr4 21700826 21700873 -180627474 + L2 LINE L2 3201 3251 -62 * 376 287 84 6 chr4 21700859 21701026 -180627321 + MIR SINE MIR 61 240 -22 566 246 69 69 chr4 21702058 21702261 -180626086 - MIR SINE MIR -2 260 58 518 299 161 0 chr4 21702362 21702579 -180625768 - MIR SINE MIR -8 254 3 23 0 0 0 chr4 21703359 21703382 -180624965 + AT_rich Low_complexity Low_complexity 1 23 0 757 163 36 18 chr4 21704143 21704417 -180623930 + L1MB7 LINE L1 5748 6172 -12 266 385 37 15 chr4 21705949 21706084 -180622263 - L2 LINE L2 -219 3053 2916 22 0 0 0 chr4 21706101 21706123 -180622224 + AT_rich Low_complexity Low_complexity 1 22 0 183 354 131 8 chr4 21706259 21706389 -180621958 + L2 LINE L2 3118 3263 -9 229 275 37 64 chr4 21706491 21706600 -180621747 - MIR SINE MIR -72 190 85 538 143 0 0 chr4 21706742 21706826 -180621521 + L1MB3 LINE L1 6075 6158 -25 381 286 36 54 chr4 21707015 21707183 -180621164 + MER5A DNA MER1_type 1 165 -24 * 450 301 31 25 chr4 21707050 21707213 -180621134 - MER5A DNA MER1_type -23 166 3 483 281 156 18 chr4 21707288 21707512 -180620835 + MIR SINE MIR 2 256 -6 2210 107 3 3 chr4 21708464 21708763 -180619584 - AluSx SINE Alu -13 299 1 28 48 0 0 chr4 21708923 21708965 -180619382 + AT_rich Low_complexity Low_complexity 1 42 0 1420 169 31 36 chr4 21708968 21709339 -180619008 - L1MA8 LINE L1 -22 6269 5912 697 92 10 0 chr4 21709337 21709435 -180618912 + L1MA7 LINE L1 5853 5951 -340 * 279 319 73 5 chr4 21709598 21709721 -180618626 - MIR SINE MIR -64 144 49 1000 320 131 16 chr4 21709892 21710463 -180617884 - L2 LINE L2 -353 2961 2325 238 319 117 33 chr4 21710463 21710676 -180617671 - L2 LINE L2 -649 2665 2435 911 309 8 4 chr4 21711548 21711794 -180616553 - MIR SINE MIR -6 256 10 435 231 0 0 chr4 21712049 21712157 -180616190 + (TA)n Simple_repeat Simple_repeat 2 109 0 2277 90 0 7 chr4 21712193 21712494 -180615853 + AluY SINE Alu 1 299 -12 310 279 31 93 chr4 21713865 21714026 -180614321 + MIR SINE MIR 106 256 -6 23 33 0 0 chr4 21714809 21714839 -180613508 + AT_rich Low_complexity Low_complexity 1 30 0 31 26 0 0 chr4 21716163 21716201 -180612146 + AT_rich Low_complexity Low_complexity 1 38 0 2138 108 7 3 chr4 21718357 21718654 -180609693 - AluSx SINE Alu -14 298 1 387 0 0 0 chr4 21719084 21719127 -180609220 + (TG)n Simple_repeat Simple_repeat 2 44 0 1966 108 0 0 chr4 21719158 21719444 -180608903 - AluSx SINE Alu 0 311 26 188 331 66 70 chr4 21720385 21720627 -180607720 - L3b LINE CR1 -57 1526 1286 540 97 0 0 chr4 21720821 21720914 -180607433 + (TA)n Simple_repeat Simple_repeat 2 94 0 2018 106 10 30 chr4 21725458 21725761 -180602586 - AluSq SINE Alu -16 297 1 22 0 0 0 chr4 21729433 21729455 -180598892 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr4 21731044 21731071 -180597276 + AT_rich Low_complexity Low_complexity 1 27 0 32 0 0 0 chr4 21732163 21732195 -180596152 + AT_rich Low_complexity Low_complexity 1 32 0 351 332 96 5 chr4 21732944 21733143 -180595204 + Charlie8 DNA MER1_type 59 275 -2142 260 345 109 0 chr4 21733530 21733649 -180594698 + L2 LINE L2 3141 3272 0 188 108 0 27 chr4 21733651 21733688 -180594659 + (TAA)n Simple_repeat Simple_repeat 1 36 0 27 29 0 0 chr4 21735344 21735378 -180592969 + AT_rich Low_complexity Low_complexity 1 34 0 2010 149 0 0 chr4 21737763 21738065 -180590282 + AluSp SINE Alu 1 302 -11 2311 67 0 3 chr4 21738067 21738391 -180589956 + AluY SINE Alu 1 323 0 230 234 0 0 chr4 21738626 21738673 -180589674 + (CA)n Simple_repeat Simple_repeat 2 48 0 209 179 0 36 chr4 21738679 21738735 -180589612 + (TATATG)n Simple_repeat Simple_repeat 1 54 0 21 0 0 0 chr4 21738977 21738998 -180589349 + AT_rich Low_complexity Low_complexity 1 21 0 344 266 35 35 chr4 21741860 21741973 -180586374 + MIR SINE MIR 33 145 -117 386 342 118 57 chr4 21742234 21742756 -180585591 - L2 LINE L2 -456 2858 2284 2250 81 3 10 chr4 21742756 21743054 -180585293 + AluY SINE Alu 1 296 -15 386 342 118 57 chr4 21743054 21743210 -180585137 - L2 LINE L2 -1030 2284 2139 510 268 12 42 chr4 21744885 21745053 -180583294 + L2 LINE L2 3150 3312 -1 216 0 0 0 chr4 21746127 21746151 -180582196 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2120 107 0 7 chr4 21746153 21746461 -180581886 + AluSc SINE Alu 4 309 0 3041 135 85 19 chr4 21746966 21747600 -180580747 - L1PB4 LINE L1 -291 5865 5184 1983 96 22 0 chr4 21747738 21748036 -180580311 - AluY SINE Alu 0 309 6 23 54 0 0 chr4 21748871 21748908 -180579439 + AT_rich Low_complexity Low_complexity 1 37 0 1692 156 25 0 chr4 21749565 21749841 -180578506 - AluSx SINE Alu -28 284 2 187 273 23 0 chr4 21750640 21750684 -180577663 - L2 LINE L2 -8 3305 3261 1346 146 204 0 chr4 21753016 21753296 -180575051 + MER44D DNA MER2_type 1 607 -2 452 322 40 17 chr4 21753424 21753601 -180574746 - MIR SINE MIR -70 192 12 25 0 0 0 chr4 21755016 21755041 -180573306 + AT_rich Low_complexity Low_complexity 1 25 0 22 35 0 0 chr4 21755617 21755646 -180572701 + AT_rich Low_complexity Low_complexity 1 29 0 182 360 45 54 chr4 21755820 21755931 -180572416 + L2 LINE L2 3163 3272 0 341 328 23 0 chr4 21756660 21756837 -180571510 + L1ME4a LINE L1 5742 5922 -199 222 118 0 0 chr4 21757273 21757307 -180571040 + (TG)n Simple_repeat Simple_repeat 2 35 0 281 174 14 0 chr4 21757378 21757447 -180570900 + (TA)n Simple_repeat Simple_repeat 2 71 0 397 264 66 84 chr4 21757570 21757894 -180570453 - LTR33A LTR ERVL -174 347 23 25 65 0 0 chr4 21759486 21759532 -180568815 + AT_rich Low_complexity Low_complexity 1 46 0 2153 81 3 75 chr4 21759666 21760000 -180568347 - AluY SINE Alu -1 310 1 207 0 0 0 chr4 21760638 21760661 -180567686 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 624 299 73 59 chr4 21761781 21762219 -180566128 - L2 LINE L2 -9 3304 2861 279 0 0 0 chr4 21762516 21762547 -180565800 + (TA)n Simple_repeat Simple_repeat 2 32 0 2683 13 0 6 chr4 21762552 21762864 -180565483 - AluY SINE Alu -1 310 1 240 162 73 29 chr4 21763121 21763189 -180565158 + L1ME4a LINE L1 6051 6121 0 21 36 0 0 chr4 21763309 21763337 -180565010 + AT_rich Low_complexity Low_complexity 1 28 0 2160 51 4 11 chr4 21763743 21764017 -180564330 + AluY SINE Alu 35 306 -5 427 258 131 35 chr4 21764603 21764832 -180563515 + MER112 DNA MER1_type 8 258 -2 291 188 135 21 chr4 21766650 21766746 -180561601 + MER103 DNA DNA 13 119 -47 242 189 0 57 chr4 21766755 21766808 -180561539 - L2 LINE L2 -4 3268 3219 614 296 86 0 chr4 21767098 21767341 -180561006 - L2 LINE L2 -389 2925 2662 2017 107 10 3 chr4 21771254 21771545 -180556802 - AluY SINE Alu -18 293 1 23 0 0 0 chr4 21771635 21771658 -180556689 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr4 21772580 21772610 -180555737 + AT_rich Low_complexity Low_complexity 1 30 0 25 51 0 0 chr4 21773138 21773177 -180555170 + AT_rich Low_complexity Low_complexity 1 39 0 196 255 78 0 chr4 21773615 21773666 -180554681 + L2 LINE L2 3209 3263 -9 217 246 73 64 chr4 21773856 21773966 -180554381 + L2 LINE L2 3160 3270 -43 1637 169 3 45 chr4 21774235 21774543 -180553804 - AluJb SINE Alu -17 295 1 31 0 0 0 chr4 21774634 21774665 -180553682 + AT_rich Low_complexity Low_complexity 1 31 0 3672 220 57 7 chr4 21774669 21775590 -180552757 + L1MB7 LINE L1 5213 6179 -5 235 200 0 31 chr4 21775611 21775676 -180552671 + MER106B DNA MER1_type 992 1054 -5 212 167 0 0 chr4 21776819 21776855 -180551492 - L2 LINE L2 -7 3306 3271 227 58 39 39 chr4 21777811 21777863 -180550484 + (CA)n Simple_repeat Simple_repeat 2 53 0 2208 117 0 0 chr4 21779000 21779300 -180549047 + AluSg SINE Alu 3 302 -8 881 255 8 35 chr4 21779526 21779839 -180548508 - MLT1B LTR MaLR -12 374 71 6112 127 56 56 chr4 21779846 21780166 -180548181 - Tigger3b DNA MER2_type -1824 1204 885 188 67 33 0 chr4 21780166 21780196 -180548151 + (TGAG)n Simple_repeat Simple_repeat 1 31 0 6112 127 56 56 chr4 21780196 21780253 -180548094 - Tigger3b DNA MER2_type -2143 885 829 2308 97 0 6 chr4 21780253 21780564 -180547783 + AluSq SINE Alu 1 309 -4 6112 127 56 56 chr4 21780564 21781390 -180546957 - Tigger3b DNA MER2_type -2199 829 1 350 147 132 0 chr4 21781390 21781458 -180546889 - MLT1B LTR MaLR -313 77 1 2192 75 0 4 chr4 21781934 21782238 -180546109 - AluY SINE Alu 0 304 2 24 53 0 0 chr4 21783605 21783643 -180544704 + AT_rich Low_complexity Low_complexity 1 38 0 30 0 0 0 chr4 21783705 21783735 -180544612 + AT_rich Low_complexity Low_complexity 1 30 0 2074 128 0 13 chr4 21783980 21784286 -180544061 + AluSx SINE Alu 1 302 -10 186 43 0 0 chr4 21784471 21784494 -180543853 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 202 192 50 101 chr4 21785971 21786070 -180542277 - MIR SINE MIR -41 221 128 378 0 0 0 chr4 21786791 21786833 -180541514 + (TG)n Simple_repeat Simple_repeat 1 42 0 329 287 0 11 chr4 21786833 21786927 -180541420 + MER103 DNA DNA 63 155 -11 1482 81 0 0 chr4 21787956 21788154 -180540193 + L1PA6 LINE L1 5956 6153 -1 21 0 0 0 chr4 21788170 21788191 -180540156 + AT_rich Low_complexity Low_complexity 1 21 0 234 62 0 0 chr4 21789424 21789456 -180538891 + (TA)n Simple_repeat Simple_repeat 1 32 0 260 179 36 24 chr4 21791653 21791737 -180536610 + (TA)n Simple_repeat Simple_repeat 2 86 0 281 188 29 14 chr4 21791849 21791918 -180536429 - L2 LINE L2 -3 3310 3241 231 246 90 57 chr4 21792143 21792265 -180536082 - MLT1I LTR MaLR -199 210 85 254 297 101 34 chr4 21792580 21792728 -180535619 - L2 LINE L2 -44 3269 3112 259 194 16 0 chr4 21793705 21793767 -180534580 + (TA)n Simple_repeat Simple_repeat 1 63 0 250 301 63 26 chr4 21794048 21794317 -180534030 - L1MC/D LINE L1 -2264 5544 5266 254 259 125 35 chr4 21794458 21794701 -180533646 - L1MC/D LINE L1 -1013 5133 4883 24 53 0 0 chr4 21796338 21796376 -180531971 + AT_rich Low_complexity Low_complexity 1 38 0 424 51 0 0 chr4 21796376 21796435 -180531912 - L1PA6 LINE L1 -2 6152 6094 418 294 14 7 chr4 21796848 21796991 -180531356 + MIR SINE MIR 117 260 -2 390 42 0 0 chr4 21797708 21797756 -180530591 + (TG)n Simple_repeat Simple_repeat 1 48 0 2300 86 0 22 chr4 21798728 21799043 -180529304 - AluSg SINE Alu -2 308 1 188 345 0 0 chr4 21799121 21799179 -180529168 - L2 LINE L2 -10 3303 3246 427 350 94 5 chr4 21799301 21799524 -180528823 + MIR SINE MIR 14 256 -6 772 212 208 26 chr4 21799597 21800088 -180528259 - Charlie2 DNA MER1_type -36 2826 2247 476 290 29 14 chr4 21800155 21800362 -180527985 - Charlie2 DNA MER1_type -2515 267 58 229 306 12 12 chr4 21800450 21800535 -180527812 - MER103 DNA DNA -14 152 68 13129 123 26 7 chr4 21800543 21800704 -180527643 + Tigger1 DNA MER2_type 341 497 -1921 180 0 0 0 chr4 21800704 21800724 -180527623 + (CAA)n Simple_repeat Simple_repeat 2 21 0 13129 123 26 7 chr4 21800724 21802600 -180525747 + Tigger1 DNA MER2_type 497 2418 0 872 201 44 20 chr4 21802746 21802950 -180525397 + MER3 DNA MER1_type 1 209 0 418 317 101 22 chr4 21803550 21803777 -180524570 - MIR SINE MIR 0 262 18 23 68 0 0 chr4 21803778 21803822 -180524525 + AT_rich Low_complexity Low_complexity 1 44 0 522 272 22 22 chr4 21804788 21804968 -180523379 - L2 LINE L2 0 3313 3134 197 316 68 30 chr4 21806358 21806491 -180521856 + L2 LINE L2 2239 2376 -938 362 333 68 23 chr4 21806509 21806641 -180521706 + L2 LINE L2 3133 3270 -2 23 0 0 0 chr4 21814105 21814128 -180514219 + AT_rich Low_complexity Low_complexity 1 23 0 375 23 0 0 chr4 21814686 21814730 -180513617 + (TA)n Simple_repeat Simple_repeat 2 45 0 24 0 0 0 chr4 21816356 21816380 -180511967 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr4 21817502 21817524 -180510823 + AT_rich Low_complexity Low_complexity 1 22 0 2276 92 0 0 chr4 21817905 21818220 -180510127 - AluY SINE Alu 0 315 1 2006 141 3 0 chr4 21818473 21818777 -180509570 + AluSx SINE Alu 3 307 -5 23 54 0 0 chr4 21822444 21822481 -180505866 + AT_rich Low_complexity Low_complexity 1 37 0 2035 131 3 20 chr4 21822983 21823280 -180505067 + AluSg SINE Alu 5 296 -14 32 26 0 0 chr4 21823383 21823422 -180504925 + AT_rich Low_complexity Low_complexity 1 39 0 22 0 0 0 chr4 21823638 21823660 -180504687 + AT_rich Low_complexity Low_complexity 1 22 0 2121 134 0 13 chr4 21823832 21824139 -180504208 + AluSx SINE Alu 1 303 -9 201 159 32 48 chr4 21824273 21824336 -180504011 + (TATAA)n Simple_repeat Simple_repeat 1 62 0 459 292 62 11 chr4 21824544 21824722 -180503625 + MIR SINE MIR 2 188 -74 2120 107 0 3 chr4 21825297 21825588 -180502759 - AluSg SINE Alu -20 290 1 265 258 15 0 chr4 21826776 21826842 -180501505 + L2 LINE L2 3247 3313 0 996 144 0 0 chr4 21827557 21827730 -180500617 + (TA)n Simple_repeat Simple_repeat 2 174 0 1161 61 14 7 chr4 21827730 21827878 -180500469 - AluY SINE Alu -16 295 147 410 89 54 139 chr4 21827978 21828129 -180500218 + L1PA12 LINE L1 6049 6163 0 2325 93 0 3 chr4 21828289 21828589 -180499758 - AluSq SINE Alu -14 299 1 246 105 0 0 chr4 21828823 21828861 -180499486 + (ATTG)n Simple_repeat Simple_repeat 2 39 0 2245 96 3 3 chr4 21828912 21829213 -180499134 + AluSp SINE Alu 1 301 -12 235 320 62 56 chr4 21829770 21829948 -180498399 + MER5A DNA MER1_type 10 188 -1 244 279 13 25 chr4 21829950 21830029 -180498318 - MIR3 SINE MIR -49 159 82 450 35 96 9 chr4 21830425 21830540 -180497807 + (TA)n Simple_repeat Simple_repeat 1 125 0 1602 131 123 0 chr4 21830540 21830792 -180497555 - AluSx SINE Alu -27 285 3 240 35 0 0 chr4 21830867 21830896 -180497451 + (TG)n Simple_repeat Simple_repeat 1 29 0 201 278 0 41 chr4 21831339 21831436 -180496911 + A-rich Low_complexity Low_complexity 2 94 0 1484 175 64 59 chr4 21831500 21831888 -180496459 - MLT1B LTR MaLR 0 390 1 192 315 161 35 chr4 21831924 21832191 -180496156 + L2 LINE L2 2376 2608 -706 2053 125 13 16 chr4 21832191 21832504 -180495843 - AluSq SINE Alu -1 312 1 192 315 161 35 chr4 21832504 21832696 -180495651 + L2 LINE L2 2608 2893 -421 4130 173 7 9 chr4 21832862 21833595 -180494752 - MER44D DNA MER2_type -1 604 2 207 0 0 0 chr4 21833670 21833693 -180494654 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1640 96 5 5 chr4 21833996 21834252 -180494095 + AluSc SINE Alu 67 322 0 229 325 24 0 chr4 21834538 21834621 -180493726 - MIR3 SINE MIR -21 187 103 420 281 16 8 chr4 21834812 21834940 -180493407 + MER94 DNA DNA 2 130 -4 2129 113 0 0 chr4 21835194 21835485 -180492862 + AluSx SINE Alu 22 312 0 265 307 20 30 chr4 21836965 21837066 -180491281 + MIR SINE MIR 158 257 -5 2118 94 35 0 chr4 21837432 21837718 -180490629 - AluSq SINE Alu -17 296 1 199 405 76 8 chr4 21838080 21838211 -180490136 + L2 LINE L2 3133 3272 0 742 215 119 9 chr4 21839456 21839675 -180488672 + L1ME3A LINE L1 5861 6103 -67 2569 49 3 0 chr4 21840301 21840605 -180487742 - AluY SINE Alu -6 305 1 248 321 0 12 chr4 21840874 21840958 -180487389 - MER94 DNA DNA 0 134 52 463 255 108 13 chr4 21841160 21841317 -180487030 - MIR3 SINE MIR -21 187 16 211 200 20 20 chr4 21841457 21841507 -180486840 - L2 LINE L2 0 3313 3264 344 331 65 6 chr4 21843578 21843747 -180484600 - MIR SINE MIR -2 260 82 2405 141 23 9 chr4 21843748 21844188 -180484159 + L1MA9 LINE L1 5864 6309 -3 234 136 34 17 chr4 21844300 21844359 -180483988 + (CATA)n Simple_repeat Simple_repeat 1 60 0 332 247 21 0 chr4 21844366 21844459 -180483888 + L1MC4 LINE L1 6614 6708 -1334 292 253 0 22 chr4 21844503 21844594 -180483753 + L1MC4 LINE L1 6614 6702 -1340 201 74 0 0 chr4 21844596 21844623 -180483724 + (TATG)n Simple_repeat Simple_repeat 2 28 0 253 211 18 83 chr4 21844623 21844732 -180483615 - L1MC4 LINE L1 -1339 6703 6602 288 170 0 0 chr4 21844762 21844815 -180483532 + (TATATG)n Simple_repeat Simple_repeat 2 54 0 653 296 32 9 chr4 21845080 21845300 -180483047 + MIR SINE MIR 38 262 0 23 68 0 0 chr4 21845539 21845583 -180482764 + AT_rich Low_complexity Low_complexity 1 44 0 1664 81 4 28 chr4 21846143 21846391 -180481956 + L1MA2 LINE L1 6063 6304 0 673 191 17 40 chr4 21846409 21846598 -180481749 + L1MA7 LINE L1 5936 6122 -169 2283 115 0 6 chr4 21847351 21847665 -180480682 - AluSx SINE Alu 0 312 1 184 345 71 36 chr4 21847707 21847791 -180480556 + MIR SINE MIR 31 117 -91 858 278 115 47 chr4 21848818 21849304 -180479043 - LTR33 LTR ERVL -1 520 2 314 239 228 0 chr4 21849324 21849416 -180478931 - L2 LINE L2 -3 3310 3198 21 57 0 0 chr4 21849789 21849824 -180478523 + AT_rich Low_complexity Low_complexity 1 35 0 32 0 0 0 chr4 21850440 21850472 -180477875 + AT_rich Low_complexity Low_complexity 1 32 0 1934 86 4 8 chr4 21850712 21850968 -180477379 - AluY SINE Alu -3 308 54 29 78 0 0 chr4 21851191 21851255 -180477092 + AT_rich Low_complexity Low_complexity 1 64 0 212 175 35 0 chr4 21851255 21851312 -180477035 + GA-rich Low_complexity Low_complexity 2 60 0 568 325 55 20 chr4 21851509 21851709 -180476638 + MIR SINE MIR 32 238 -24 285 286 19 29 chr4 21851712 21851817 -180476530 + L2 LINE L2 2315 2418 -896 295 330 21 0 chr4 21853422 21853519 -180474828 + MIR3 SINE MIR 61 159 -49 288 53 0 0 chr4 21854319 21854357 -180473990 + (GGGGA)n Simple_repeat Simple_repeat 5 42 0 218 299 26 0 chr4 21854757 21854834 -180473513 + GA-rich Low_complexity Low_complexity 2 80 0 769 216 88 0 chr4 21857202 21857373 -180470974 - MER5A DNA MER1_type -2 187 2 659 235 5 70 chr4 21857396 21857583 -180470764 - MER63A DNA MER1_type -35 175 1 2098 111 99 41 chr4 21857709 21858053 -180470294 - THE1B LTR MaLR 0 364 1 483 236 96 51 chr4 21858627 21858805 -180469542 + MIR SINE MIR 74 259 -3 2257 93 7 0 chr4 21859036 21859326 -180469021 - AluY SINE Alu -19 292 1 2236 105 0 0 chr4 21859518 21859813 -180468534 - AluSg SINE Alu -15 295 1 227 0 91 0 chr4 21860376 21860409 -180467938 + T-rich Low_complexity Low_complexity 5 40 0 2016 109 7 11 chr4 21860444 21860728 -180467619 - AluSq SINE Alu -30 283 1 1671 178 50 4 chr4 21860892 21861173 -180467174 + AluJb SINE Alu 1 294 -18 399 231 370 0 chr4 21861638 21861811 -180466536 + MIR SINE MIR 3 239 -23 468 300 126 9 chr4 21862811 21863034 -180465313 - MIR SINE MIR -2 260 12 188 326 76 22 chr4 21864979 21865071 -180463276 + MIR3 SINE MIR 2 98 -110 207 114 0 0 chr4 21865371 21865406 -180462941 + (TGAA)n Simple_repeat Simple_repeat 3 37 0 222 208 0 0 chr4 21865730 21865778 -180462569 + (AATTG)n Simple_repeat Simple_repeat 5 52 0 192 279 0 0 chr4 21866045 21866088 -180462259 - L2 LINE L2 -8 3305 3263 377 318 98 19 chr4 21866373 21866587 -180461760 - MIR SINE MIR -3 259 29 884 213 0 0 chr4 21866776 21866945 -180461402 + AluJb SINE Alu 137 305 -7 2418 76 0 3 chr4 21867317 21867618 -180460729 + AluY SINE Alu 1 300 -11 3533 105 4 8 chr4 21867624 21868139 -180460208 + L1PA13 LINE L1 5432 5944 -219 186 43 0 0 chr4 21869153 21869176 -180459171 + (CA)n Simple_repeat Simple_repeat 1 23 0 285 277 43 0 chr4 21869392 21869486 -180458861 - MIR SINE MIR -4 258 161 503 310 35 100 chr4 21870601 21871052 -180457295 - L2 LINE L2 -17 3296 2875 254 75 528 0 chr4 21872675 21872728 -180455619 - MIR SINE MIR -92 116 36 226 209 0 0 chr4 21873852 21873895 -180454452 + (CA)n Simple_repeat Simple_repeat 2 44 0 1045 276 59 28 chr4 21874287 21874642 -180453705 + LTR16A LTR ERVL 38 403 -47 1764 132 38 25 chr4 21874844 21875185 -180453162 - MER4A LTR ERV1 0 664 261 632 131 0 10 chr4 21875185 21875284 -180453063 - MER4A LTR ERV1 -566 98 1 7283 107 46 12 chr4 21875296 21876419 -180451928 - MER4A-int LTR ERV1 -5 6593 5432 582 160 134 0 chr4 21876419 21876538 -180451809 + LTR8 LTR ERV1 123 257 -434 4598 67 59 9 chr4 21876538 21877235 -180451112 - MER4-int LTR ERV1 -4103 2495 1764 489 34 0 0 chr4 21877251 21877310 -180451037 + (CA)n Simple_repeat Simple_repeat 2 60 0 3281 124 120 25 chr4 21877315 21877881 -180450466 - MER4-int LTR ERV1 -5608 1150 531 2988 91 95 0 chr4 21877882 21878291 -180450056 - LTR7 LTR ERV1 -2 448 1 2467 90 50 13 chr4 21878291 21878669 -180449678 - HERVH LTR ERV1 0 7713 7322 1386 127 38 0 chr4 21878667 21878879 -180449468 - HERVH LTR ERV1 -1894 5819 5600 * 8268 130 6 7 chr4 21878880 21880603 -180447744 - HERVH LTR ERV1 -2287 4242 3492 824 162 20 0 chr4 21880593 21880741 -180447606 - HERVH LTR ERV1 -4423 3290 3140 * 20147 102 21 7 chr4 21880735 21883681 -180444666 - HERVH LTR ERV1 -4726 2987 1 3081 81 93 0 chr4 21883683 21884093 -180444254 - LTR7 LTR ERV1 -2 448 1 2357 127 12 6 chr4 21884093 21884439 -180443908 - MER4A-int LTR ERV1 -6222 536 189 951 258 119 51 chr4 21884438 21884680 -180443667 - MER4A-int LTR ERV1 -4107 2224 1949 * 2233 90 10 0 chr4 21884680 21884969 -180443378 + AluY SINE Alu 1 292 -19 951 258 119 51 chr4 21884969 21885079 -180443268 - MER4A-int LTR ERV1 -4382 1949 1848 2548 118 86 31 chr4 21885108 21885731 -180442616 - MER4A-int LTR ERV1 -5745 853 3 1666 129 16 22 chr4 21885736 21886046 -180442301 - MER4A LTR ERV1 0 664 261 672 121 0 10 chr4 21886046 21886145 -180442202 - MER4A LTR ERV1 -566 98 1 868 235 20 15 chr4 21886475 21886658 -180441689 - MLT1A2 LTR MaLR 0 374 191 713 176 69 8 chr4 21886658 21886789 -180441558 + MLT1A1 LTR MaLR 1 139 -226 787 148 0 16 chr4 21886789 21886917 -180441430 - FLAM_C SINE Alu 0 143 18 732 234 60 5 chr4 21886920 21887104 -180441243 + MLT1A1 LTR MaLR 171 364 -1 313 227 0 13 chr4 21887171 21887246 -180441101 - MLT1A2 LTR MaLR -213 161 88 1411 120 0 0 chr4 21887251 21887460 -180440887 + L1P3 LINE L1 949 1157 -5304 805 186 18 36 chr4 21887460 21887627 -180440720 - MER58 DNA MER1_type -176 165 2 23 0 0 0 chr4 21887817 21887840 -180440507 + AT_rich Low_complexity Low_complexity 1 23 0 198 341 80 0 chr4 21887880 21887968 -180440379 + L2 LINE L2 3178 3272 0 6218 134 12 7 chr4 21888672 21890174 -180438173 - L1PB2 LINE L1 -2 6149 4639 341 339 8 0 chr4 21890195 21890325 -180438022 + L1MEd LINE L1 42 172 -5947 * 592 206 206 0 chr4 21890323 21890459 -180437888 + L1MEd LINE L1 466 629 -5490 632 234 74 69 chr4 21890551 21890785 -180437562 + L1MEd LINE L1 796 1034 -5085 679 231 0 30 chr4 21890785 21890919 -180437428 + FLAM_C SINE Alu 1 130 -3 632 234 74 69 chr4 21890919 21891103 -180437244 + L1MEd LINE L1 1034 1216 -4903 307 97 32 16 chr4 21891111 21891173 -180437174 + L1PB1 LINE L1 5957 6019 -132 215 335 60 37 chr4 21891215 21891430 -180436917 + MIR SINE MIR 4 223 -39 341 236 0 0 chr4 21891591 21891663 -180436684 - L2 LINE L2 0 3272 3201 189 316 0 0 chr4 21891691 21891748 -180436599 + MIR SINE MIR 169 225 -37 202 284 60 15 chr4 21891891 21891958 -180436389 + MIR SINE MIR 15 84 -178 693 294 60 7 chr4 21891965 21892247 -180436100 - LTR16C LTR ERVL -4 487 191 207 180 98 16 chr4 21892389 21892450 -180435897 + MIR SINE MIR 99 164 -98 590 238 65 92 chr4 21892537 21892940 -180435407 + MLT1J2 LTR MaLR 59 450 0 278 222 0 49 chr4 21892960 21893041 -180435306 + MIR SINE MIR 186 262 0 1016 254 152 6 chr4 21894248 21894610 -180433737 + MER31B LTR ERV1 1 415 -51 2835 141 19 23 chr4 21894626 21895102 -180433245 + MER31A LTR ERV1 12 485 0 287 266 60 47 chr4 21895170 21895265 -180433082 + MIR SINE MIR 24 121 -87 1243 124 5 5 chr4 21895265 21895451 -180432896 - MER83C-int LTR ERV1 -982 3898 3713 304 106 0 0 chr4 21895461 21895508 -180432839 + MER83B-int LTR ERV1 3666 3712 -1168 7164 192 46 21 chr4 21895509 21897059 -180431288 - MER83C-int LTR ERV1 -1176 3704 48 2027 139 78 6 chr4 21897118 21897450 -180430897 - MER83C LTR ERV1 0 373 18 1791 211 15 0 chr4 21897464 21897791 -180430556 + MSTA LTR MaLR 97 428 0 2726 123 5 3 chr4 21898339 21898713 -180429634 - THE1C LTR MaLR 0 375 1 2696 123 5 5 chr4 21899637 21900012 -180428335 - THE1C LTR MaLR 0 375 1 270 256 0 12 chr4 21900244 21900326 -180428021 - LTR37B LTR ERV1 0 468 388 7952 170 54 2 chr4 21900337 21901766 -180426581 + L1PB2 LINE L1 514 2016 -4847 3212 139 7 138 chr4 21901767 21902534 -180425813 - MSTA-int LTR MaLR -912 668 3 2032 169 130 16 chr4 21902535 21902919 -180425428 - MSTA LTR MaLR 0 428 1 14294 177 23 17 chr4 21902921 21904862 -180423485 + L1PB2 LINE L1 2783 4712 -2155 2083 154 55 25 chr4 21904862 21905226 -180423121 + THE1C LTR MaLR 1 375 0 14294 177 23 17 chr4 21905226 21905508 -180422839 + L1PB2 LINE L1 4712 4991 -1876 298 91 68 0 chr4 21905508 21905552 -180422795 + U3 snRNA snRNA 29 75 -142 14294 177 23 17 chr4 21905552 21905634 -180422713 + L1PB2 LINE L1 4991 5071 -1796 200 59 29 0 chr4 21905634 21905668 -180422679 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 14294 177 23 17 chr4 21905668 21907383 -180420964 + L1PB2 LINE L1 5071 6867 0 511 216 39 0 chr4 21907442 21907544 -180420803 - MER3 DNA MER1_type -103 106 1 22 0 0 0 chr4 21908776 21908798 -180419549 + AT_rich Low_complexity Low_complexity 1 22 0 3682 135 14 52 chr4 21908888 21909439 -180418908 + MER41B LTR ERV1 1 524 -111 10416 24 3 2 chr4 21909439 21911425 -180416922 - L1PA3 LINE L1 0 6155 4222 3682 135 14 52 chr4 21911425 21911533 -180416814 + MER41B LTR ERV1 524 635 0 586 208 32 0 chr4 21911679 21911804 -180416543 - MLT1J2 LTR MaLR -318 132 4 348 256 72 8 chr4 21912072 21912197 -180416150 + MIR SINE MIR 124 256 -6 2596 160 22 2 chr4 21912954 21913411 -180414936 + L1MB3 LINE L1 5718 6183 0 524 308 111 21 chr4 21914107 21914341 -180414006 + MIR SINE MIR 8 262 0 247 332 134 11 chr4 21915300 21915487 -180412860 + MIR SINE MIR 53 262 0 260 335 36 24 chr4 21915777 21915944 -180412403 + MIR SINE MIR 82 250 -12 1808 187 12 0 chr4 21917395 21917721 -180410626 + MLT1B LTR MaLR 1 330 -60 329 152 0 152 chr4 21917839 21917931 -180410416 - MLT1E2 LTR MaLR 0 626 549 1894 81 0 4 chr4 21918036 21918282 -180410065 - L1P LINE L1 -5901 245 1 1612 86 17 10 chr4 21918249 21918586 -180409761 - L1P2 LINE L1 -628 5526 5187 * 2196 147 2 66 chr4 21918586 21919130 -180409217 + L1P LINE L1 3158 3666 -2480 17842 26 1 1 chr4 21919230 21921970 -180406377 - L1PA3 LINE L1 -109 6046 3305 482 282 40 0 chr4 21922111 21922260 -180406087 - MER63 DNA MER1_type -1 1061 907 477 80 13 27 chr4 21922260 21922335 -180406012 + MLT1B LTR MaLR 317 390 0 245 250 0 0 chr4 21923221 21923269 -180405078 + polypyrimidine Low_complexity Low_complexity 1 48 0 3126 65 15 5 chr4 21923767 21924167 -180404180 + MLT2A1 LTR ERVL 1 404 -40 337 146 0 0 chr4 21924221 21924276 -180404071 + MLT2A1 LTR ERVL 390 444 0 1840 128 88 0 chr4 21924819 21925092 -180403255 - AluSx SINE Alu -15 297 1 1921 185 38 9 chr4 21925141 21925482 -180402865 - MLT1A1 LTR MaLR 0 365 15 1301 224 101 34 chr4 21925518 21925956 -180402391 + MLT1C LTR MaLR 1 467 0 750 307 38 4 chr4 21925970 21926208 -180402139 + MIR SINE MIR 16 261 -1 24 0 0 0 chr4 21926284 21926308 -180402039 + AT_rich Low_complexity Low_complexity 1 24 0 938 176 33 22 chr4 21926326 21926508 -180401839 - MLT1A2 LTR MaLR -2 372 189 366 169 40 8 chr4 21926530 21926654 -180401693 + GA-rich Low_complexity Low_complexity 1 128 0 872 154 26 13 chr4 21926671 21926827 -180401520 - MLT1A2 LTR MaLR -216 158 1 1946 194 50 52 chr4 21928036 21928535 -180399812 + MLT1D LTR MaLR 1 498 -7 1161 249 30 14 chr4 21928594 21928891 -180399456 - MLT1A1 LTR MaLR -8 357 56 2381 110 0 0 chr4 21929409 21929718 -180398629 + AluSx SINE Alu 1 309 -3 833 191 45 6 chr4 21930993 21931171 -180397176 + MER53 DNA DNA 2 186 -3 649 235 143 31 chr4 21932198 21932394 -180395953 - MER20 DNA MER1_type 0 219 2 2319 89 3 0 chr4 21932557 21932850 -180395497 + AluSc SINE Alu 1 294 -15 377 326 67 27 chr4 21932892 21933116 -180395231 - L2 LINE L2 0 3313 3081 624 295 126 16 chr4 21933117 21933483 -180394864 - LTR50 LTR ERVL -1 794 389 538 223 81 0 chr4 21933611 21933759 -180394588 - LTR50 LTR ERVL -628 167 8 336 48 0 0 chr4 21934019 21934061 -180394286 + (TG)n Simple_repeat Simple_repeat 2 43 0 194 370 0 0 chr4 21934084 21934138 -180394209 - L2 LINE L2 -9 3263 3210 1623 178 110 14 chr4 21936422 21936445 -180391902 - MLT2D LTR ERVL -14 400 381 357 62 0 0 chr4 21936445 21936493 -180391854 + (TG)n Simple_repeat Simple_repeat 1 48 0 1623 178 110 14 chr4 21936493 21936834 -180391513 - MLT2D LTR ERVL -33 381 1 6728 210 13 5 chr4 21936934 21938169 -180390178 - ERVL LTR ERVL -2517 3247 2003 493 241 41 87 chr4 21938409 21938689 -180389658 + MLT1H1 LTR MaLR 202 547 -8 195 392 15 23 chr4 21938748 21938878 -180389469 + MIR3 SINE MIR 59 187 -21 311 327 96 28 chr4 21939458 21939562 -180388785 - L1MC4a LINE L1 -1821 5987 5891 2436 73 0 10 chr4 21939562 21939904 -180388443 - AluY SINE Alu 0 311 1 311 327 96 28 chr4 21939904 21940050 -180388297 - L1MC4a LINE L1 -1917 5891 5720 1018 230 53 32 chr4 21940066 21940230 -180388117 - MLT1A2 LTR MaLR -24 350 176 306 50 0 0 chr4 21940230 21940270 -180388077 + (GA)n Simple_repeat Simple_repeat 2 41 0 1018 230 53 32 chr4 21940270 21940388 -180387959 - MLT1A2 LTR MaLR -198 176 62 577 111 63 71 chr4 21940388 21940514 -180387833 + L1MB2 LINE L1 6047 6171 0 264 231 120 60 chr4 21940642 21940759 -180387588 - MLT1J LTR MaLR -75 436 313 276 214 86 14 chr4 21941005 21941075 -180387272 - MLT1L LTR MaLR -536 79 5 2016 121 0 24 chr4 21941840 21942137 -180386210 - AluSc SINE Alu -19 290 1 372 267 185 0 chr4 21942148 21942294 -180386053 - L1ME3A LINE L1 -5 6165 5993 1240 254 143 35 chr4 21942419 21942875 -180385472 + MLT1D LTR MaLR 1 505 0 1776 147 0 0 chr4 21943708 21943981 -180384366 + AluY SINE Alu 14 286 -25 2415 184 26 22 chr4 21944192 21944655 -180383692 - MLT1C LTR MaLR 0 467 3 400 279 0 0 chr4 21944895 21944981 -180383366 - MER5A DNA MER1_type -83 106 21 23 0 0 0 chr4 21945199 21945222 -180383125 + AT_rich Low_complexity Low_complexity 1 23 0 1100 174 10 0 chr4 21945483 21945679 -180382668 + L1MA9 LINE L1 5985 6182 -130 2042 164 14 5 chr4 21945794 21946165 -180382182 - L1P LINE L1 -3156 2990 2617 4191 143 21 69 chr4 21946961 21947858 -180380489 + L1P LINE L1 4121 4974 -1172 793 268 28 38 chr4 21949119 21949410 -180378937 - AluJo SINE Alu -11 301 14 465 309 65 25 chr4 21950376 21950577 -180377770 + MIR SINE MIR 35 243 -19 496 268 147 32 chr4 21951975 21952132 -180376215 + MER5A DNA MER1_type 15 189 0 353 238 0 0 chr4 21953065 21953149 -180375198 - MLT1A2 LTR MaLR -306 84 1 2132 183 32 9 chr4 21954628 21955086 -180373261 - L1MB3 LINE L1 -65 6124 5662 2061 146 17 0 chr4 21956003 21956360 -180371987 + L1PBa LINE L1 1654 2016 -4847 1315 184 9 0 chr4 21956361 21956589 -180371758 - MSTA-int LTR MaLR -912 668 439 292 192 68 41 chr4 21956590 21956663 -180371684 - MSTA LTR MaLR -178 250 176 310 217 103 60 chr4 21956708 21956892 -180371455 - MSTA-int LTR MaLR -1218 433 242 1754 217 15 0 chr4 21957721 21958048 -180370299 - MSTA LTR MaLR 0 428 97 462 267 181 8 chr4 21958054 21958320 -180370027 + MER83B LTR ERV1 5 316 -62 8243 129 7 15 chr4 21959021 21960320 -180368027 - THE1A-int LTR MaLR -291 1289 1 672 212 108 4 chr4 21960323 21960592 -180367755 - THE1A LTR MaLR -3 352 56 260 335 36 24 chr4 21961904 21962071 -180366276 - MIR SINE MIR -12 250 82 22 0 0 0 chr4 21962359 21962381 -180365966 + AT_rich Low_complexity Low_complexity 1 22 0 711 231 11 60 chr4 21963192 21963448 -180364899 - MER8 DNA MER2_type 0 239 3 1371 200 37 14 chr4 21964524 21964819 -180363528 + L1M4 LINE L1 4637 4938 -1208 203 294 29 15 chr4 21966453 21966521 -180361826 - MIR SINE MIR -129 133 65 1772 140 35 7 chr4 21966747 21967032 -180361315 + AluSq SINE Alu 1 293 -20 1090 214 75 14 chr4 21968523 21968804 -180359543 - MLT1E3 LTR MaLR 0 624 327 524 250 61 14 chr4 21968868 21969014 -180359333 - MLT1E3 LTR MaLR -393 261 62 5598 126 35 14 chr4 21969760 21970721 -180357626 - L1P LINE L1 -4109 2037 1056 2291 90 3 0 chr4 21971710 21972000 -180356347 + AluSc SINE Alu 1 291 -18 377 326 67 27 chr4 21972045 21972269 -180356078 - L2 LINE L2 0 3313 3081 590 276 139 30 chr4 21972270 21972636 -180355711 - LTR50 LTR ERVL -1 794 389 245 250 0 0 chr4 21973797 21973845 -180354502 + polypyrimidine Low_complexity Low_complexity 1 48 0 2553 92 31 15 chr4 21974343 21974735 -180353612 + MLT2A1 LTR ERVL 1 398 -46 524 308 111 21 chr4 21976208 21976442 -180351905 + MIR SINE MIR 8 262 0 2122 204 3 3 chr4 21977733 21978096 -180350251 - MLT1A1 LTR MaLR -2 363 1 786 284 28 14 chr4 21978147 21978358 -180349989 - LTR33 LTR ERVL -307 214 1 391 311 15 0 chr4 21978555 21978687 -180349660 + L2 LINE L2 2219 2352 -962 215 247 161 0 chr4 21978955 21979036 -180349311 - MIR SINE MIR -5 257 164 2139 103 0 0 chr4 21980007 21980280 -180348067 - AluSc SINE Alu -36 273 1 370 93 0 0 chr4 21980281 21980335 -180348012 + L1MA9 LINE L1 6254 6307 -5 1726 184 0 9 chr4 21981281 21981607 -180346740 + MER33 DNA MER1_type 1 323 -1 2122 204 3 3 chr4 21982168 21982531 -180345816 - MLT1A1 LTR MaLR -2 363 1 786 284 28 14 chr4 21982582 21982793 -180345554 - LTR33 LTR ERVL -307 214 1 391 311 15 0 chr4 21982990 21983122 -180345225 + L2 LINE L2 2219 2352 -962 273 310 271 10 chr4 21983390 21983593 -180344754 - MIR SINE MIR -5 257 2 190 321 0 0 chr4 21983811 21983864 -180344483 - L2 LINE L2 -43 3229 3177 278 342 114 0 chr4 21983974 21984088 -180344259 - L2 LINE L2 -1 3312 3186 22 35 0 0 chr4 21984381 21984410 -180343937 + AT_rich Low_complexity Low_complexity 1 29 0 282 176 81 0 chr4 21985905 21985979 -180342368 + Charlie7 DNA MER1_type 278 357 -2255 276 143 0 0 chr4 21986243 21986285 -180342062 + MER2 DNA MER2_type 3 44 -301 317 211 0 18 chr4 21986353 21986410 -180341937 + MER2 DNA MER2_type 290 345 0 1396 252 117 18 chr4 21986410 21987017 -180341330 + Charlie7 DNA MER1_type 1729 2395 -217 328 278 42 21 chr4 21987031 21987175 -180341172 - MIR SINE MIR 0 262 116 369 301 26 13 chr4 21987627 21987783 -180340564 + L3 LINE CR1 1165 1322 -255 381 22 0 0 chr4 21988018 21988064 -180340283 + (TG)n Simple_repeat Simple_repeat 2 47 0 386 335 59 12 chr4 21988214 21988384 -180339963 - MIR SINE MIR -71 191 14 222 350 41 0 chr4 21988391 21988488 -180339859 - L2 LINE L2 -815 2499 2399 304 256 98 37 chr4 21990369 21990533 -180337814 + L1ME3A LINE L1 5960 6133 -37 2351 75 7 0 chr4 21991121 21991413 -180336934 - AluY SINE Alu -17 294 1 517 281 7 7 chr4 21993252 21993405 -180334942 + L1MA10 LINE L1 6169 6321 -13 2123 68 4 46 chr4 21993406 21993687 -180334660 + AluSp SINE Alu 23 291 -22 211 305 113 35 chr4 21993711 21993852 -180334495 + MIR SINE MIR 57 208 -54 981 135 0 0 chr4 21995445 21995578 -180332769 + FLAM_C SINE Alu 1 133 0 249 303 8 34 chr4 21996644 21996763 -180331584 + CT-rich Low_complexity Low_complexity 5 120 0 197 208 0 19 chr4 21996771 21996824 -180331523 + T-rich Low_complexity Low_complexity 3 54 0 984 190 58 23 chr4 21996855 21997151 -180331196 - MER2 DNA MER2_type 0 345 6 202 226 16 32 chr4 21997870 21997932 -180330415 + T-rich Low_complexity Low_complexity 1 61 0 8870 35 0 2 chr4 21998178 21999237 -180329110 - L1P LINE L1 -3137 3009 1953 6567 38 1 0 chr4 21999237 21999973 -180328374 + L1PA3 LINE L1 5416 6152 -3 1768 161 14 3 chr4 22000127 22000413 -180327934 + AluSx SINE Alu 3 291 -21 1088 216 9 19 chr4 22000663 22000876 -180327471 - MER77 LTR ERV1 -7 598 388 42656 58 6 1 chr4 22000888 22007013 -180321334 - L1PA5 LINE L1 0 6154 1 1508 211 49 21 chr4 22007022 22007349 -180320998 - MER77 LTR ERV1 -210 395 60 268 309 49 12 chr4 22007855 22007943 -180320404 - L2 LINE L2 -24 3248 3158 189 139 0 0 chr4 22007946 22007989 -180320358 + (TTTTTG)n Simple_repeat Simple_repeat 1 43 0 481 252 46 23 chr4 22008702 22008833 -180319514 - MER5A DNA MER1_type -30 159 26 270 116 0 0 chr4 22009913 22009956 -180318391 + (CA)n Simple_repeat Simple_repeat 2 44 0 479 310 71 25 chr4 22011431 22011656 -180316691 - MIR SINE MIR -19 243 8 1558 193 11 11 chr4 22012372 22012647 -180315700 - AluJo SINE Alu -37 275 1 28 61 0 0 chr4 22014023 22014072 -180314275 + AT_rich Low_complexity Low_complexity 1 49 0 1439 188 50 24 chr4 22015636 22015934 -180312413 - AluJo SINE Alu -6 306 1 387 278 122 65 chr4 22016826 22017071 -180311276 + MIR SINE MIR 2 260 -2 769 224 88 24 chr4 22019766 22019971 -180308376 + MIR SINE MIR 11 228 -34 2314 98 0 22 chr4 22020080 22020396 -180307951 - AluSg SINE Alu -1 309 1 311 281 22 7 chr4 22020911 22021050 -180307297 - L1 LINE L1 -1723 4423 4283 1231 200 37 14 chr4 22021368 22021663 -180306684 + L1M4 LINE L1 4637 4938 -1208 334 311 59 15 chr4 22022271 22022406 -180305941 - MER91B DNA MER1_type -32 158 18 1517 212 14 10 chr4 22022411 22022708 -180305639 + AluJo SINE Alu 1 298 -14 680 247 45 0 chr4 22022915 22023093 -180305254 - MER5A DNA MER1_type -3 186 1 36730 72 16 17 chr4 22023188 22029340 -180299007 + L1PA5 LINE L1 11 6152 -2 4567 72 15 0 chr4 22030494 22031094 -180297253 + L1PA7 LINE L1 5546 6154 0 427 339 39 17 chr4 22031119 22031352 -180296995 - MIR SINE MIR -2 260 23 413 97 14 0 chr4 22033122 22033194 -180295153 + (TA)n Simple_repeat Simple_repeat 2 74 0 213 39 0 0 chr4 22033431 22033457 -180294890 + (TG)n Simple_repeat Simple_repeat 2 27 0 * 230 54 0 27 chr4 22033456 22033493 -180294854 + (TA)n Simple_repeat Simple_repeat 1 36 0 1256 98 12 0 chr4 22033571 22033734 -180294613 + AluSg/x SINE Alu 135 299 -13 329 269 76 8 chr4 22033835 22033954 -180294393 + L2 LINE L2 3136 3262 -10 345 277 27 68 chr4 22034720 22034868 -180293479 - MIR3 SINE MIR -57 151 10 811 266 18 65 chr4 22036444 22036617 -180291730 + MIR SINE MIR 1 158 -104 2313 106 0 0 chr4 22036617 22036920 -180291427 - AluSq SINE Alu -10 303 1 811 266 18 65 chr4 22036920 22037021 -180291326 + MIR SINE MIR 158 262 0 192 152 0 0 chr4 22037429 22037462 -180290885 + L2 LINE L2 3279 3311 -2 229 372 68 14 chr4 22037680 22037828 -180290519 - MIR3 SINE MIR -11 197 42 340 361 45 8 chr4 22037836 22037969 -180290378 - MIR3 SINE MIR -3 205 68 21 0 0 0 chr4 22038350 22038371 -180289976 + AT_rich Low_complexity Low_complexity 1 21 0 189 268 0 0 chr4 22038400 22038441 -180289906 + L2 LINE L2 3222 3262 -10 309 51 0 0 chr4 22038461 22038500 -180289847 + (TTCA)n Simple_repeat Simple_repeat 1 39 0 1571 251 57 24 chr4 22040017 22040715 -180287632 - L2 LINE L2 0 3313 2588 693 332 138 55 chr4 22040963 22042099 -180286248 + L2 LINE L2 1609 2839 -475 190 211 28 127 chr4 22042280 22042351 -180285996 + MIR SINE MIR 88 151 -111 420 304 20 38 chr4 22042880 22043086 -180285261 + MIR3 SINE MIR 15 212 -50 782 217 4 83 chr4 22044436 22044689 -180283658 + MER8 DNA MER2_type 7 239 0 213 243 29 29 chr4 22045378 22045428 -180282919 + (CAAA)n Simple_repeat Simple_repeat 2 54 -17 1075 197 75 105 chr4 22045428 22045906 -180282441 + MLT2C2 LTR ERVL 1 464 0 213 243 29 29 chr4 22045906 22045925 -180282422 + (CAAA)n Simple_repeat Simple_repeat 53 71 0 287 309 65 14 chr4 22046466 22046587 -180281760 - L2 LINE L2 -10 3303 3173 2158 163 14 3 chr4 22046587 22046948 -180281399 - MLT1A1 LTR MaLR 0 365 1 287 309 65 14 chr4 22046948 22046965 -180281382 - L2 LINE L2 -140 3173 3158 959 182 68 27 chr4 22047259 22047348 -180280999 - MER46A DNA MER2_type -2502 229 145 2066 122 29 32 chr4 22047348 22047724 -180280623 - THE1C LTR MaLR 0 375 1 959 182 68 27 chr4 22047724 22047854 -180280493 - MER46A DNA MER2_type -2586 145 1 327 327 82 0 chr4 22047939 22048098 -180280249 - MLT1J1 LTR MaLR -148 298 127 714 139 35 0 chr4 22048291 22048406 -180279941 - FLAM_C SINE Alu -11 132 14 252 342 89 14 chr4 22048914 22049195 -180279152 - L1ME LINE L1 -297 5824 5523 243 0 0 0 chr4 22049243 22049270 -180279077 + (CA)n Simple_repeat Simple_repeat 2 28 0 267 231 112 0 chr4 22049507 22049612 -180278735 - MIR SINE MIR -68 140 66 270 177 0 198 chr4 22049624 22049720 -180278627 - L2 LINE L2 -2 3311 3235 278 316 162 0 chr4 22050644 22050761 -180277586 - MIR SINE MIR -19 243 108 1999 137 11 0 chr4 22050848 22051152 -180277195 + AluSx SINE Alu 1 307 0 295 384 38 0 chr4 22051154 22051287 -180277060 - MIR3 SINE MIR -31 177 40 569 318 47 35 chr4 22051369 22051624 -180276723 + MIR SINE MIR 3 260 -2 186 357 62 16 chr4 22053086 22053215 -180275132 + MIR SINE MIR 36 170 -92 1162 200 230 36 chr4 22054117 22054614 -180273733 - MLT1E2 LTR MaLR 0 626 62 33 0 0 0 chr4 22055181 22055214 -180273133 + AT_rich Low_complexity Low_complexity 1 33 0 2060 111 0 4 chr4 22055216 22055521 -180272826 + AluSx SINE Alu 4 307 0 1147 142 15 20 chr4 22055533 22055737 -180272610 - MER2 DNA MER2_type -142 203 1 364 194 43 11 chr4 22055904 22055997 -180272350 + MLT1L LTR MaLR 513 608 -7 2253 95 0 3 chr4 22056236 22056531 -180271816 - AluY SINE Alu -17 294 1 262 286 168 30 chr4 22056532 22056735 -180271612 - MIR SINE MIR 0 262 32 199 363 65 8 chr4 22056856 22056980 -180271367 - L2 LINE L2 -18 3295 3165 2029 115 44 3 chr4 22057200 22057495 -180270852 - AluSq SINE Alu -6 307 1 208 294 29 15 chr4 22057719 22057787 -180270560 + MIR SINE MIR 65 133 -129 311 317 33 17 chr4 22058607 22058727 -180269620 + MIR SINE MIR 131 252 -10 200 229 21 21 chr4 22058948 22058996 -180269351 + MIR SINE MIR 65 112 -150 333 268 258 41 chr4 22059016 22059385 -180268962 - L2 LINE L2 0 3313 2865 202 380 56 0 chr4 22059448 22059556 -180268791 + MIR SINE MIR 130 243 -19 348 321 19 0 chr4 22059611 22059717 -180268630 - L2 LINE L2 -2 3311 3204 1684 166 13 36 chr4 22059980 22060288 -180268059 + AluJo SINE Alu 1 301 -11 1575 209 3 31 chr4 22061524 22061617 -180266730 + MLT1A1 LTR MaLR 1 95 -270 2337 136 22 5 chr4 22061617 22061986 -180266361 - THE1C LTR MaLR 0 375 1 1575 209 3 31 chr4 22061986 22062246 -180266101 + MLT1A1 LTR MaLR 95 344 -21 205 369 104 18 chr4 22062301 22062637 -180265710 - L2 LINE L2 -955 2359 1995 621 297 30 42 chr4 22062707 22062943 -180265404 + MIR SINE MIR 17 249 -13 976 186 48 5 chr4 22063023 22063233 -180265114 + L1MD2 LINE L1 6139 6357 -2 271 312 92 50 chr4 22063234 22063452 -180264895 - L2 LINE L2 -1389 1925 1699 200 310 0 0 chr4 22063526 22063584 -180264763 + GA-rich Low_complexity Low_complexity 4 61 0 1340 227 52 45 chr4 22064172 22064595 -180263752 + MLT1D LTR MaLR 80 505 0 236 316 58 58 chr4 22064768 22064974 -180263373 - L2 LINE L2 -2419 895 690 268 296 30 53 chr4 22065144 22065276 -180263071 + MLT1K LTR MaLR 108 236 -352 444 242 83 13 chr4 22065319 22065476 -180262871 + MLT1K LTR MaLR 420 587 -1 2340 108 20 8 chr4 22065977 22066328 -180262019 - THE1A LTR MaLR 0 355 1 11602 95 8 4 chr4 22066328 22067902 -180260445 - THE1A-int LTR MaLR 0 1580 1 2238 116 14 11 chr4 22067902 22068256 -180260091 - THE1A LTR MaLR 0 355 1 267 280 40 0 chr4 22068480 22068555 -180259792 - L2 LINE L2 -25 3247 3170 242 277 15 0 chr4 22069128 22069193 -180259154 + CT-rich Low_complexity Low_complexity 3 68 0 204 40 0 0 chr4 22069882 22069907 -180258440 + (T)n Simple_repeat Simple_repeat 1 25 0 320 119 0 15 chr4 22070309 22070376 -180257971 + L1 LINE L1 4971 5036 -1110 3763 141 8 2 chr4 22070407 22071018 -180257329 + L1PA16 LINE L1 5538 6152 -14 384 341 48 24 chr4 22072601 22072768 -180255579 + L2 LINE L2 3102 3272 0 247 184 20 0 chr4 22074053 22074102 -180254245 + MLT1H LTR MaLR 12 61 -488 294 250 58 0 chr4 22074360 22074464 -180253883 + MLT1H LTR MaLR 434 543 -6 3741 147 75 5 chr4 22074517 22075268 -180253079 - Tigger3(Golem) DNA MER2_type 0 3029 2227 1522 283 49 5 chr4 22075621 22076235 -180252112 + L1ME2 LINE L1 1462 2102 -4294 1398 224 87 16 chr4 22076254 22076633 -180251714 + MLT2D LTR ERVL 8 413 -1 2234 101 30 0 chr4 22076655 22076951 -180251396 + AluSx SINE Alu 1 305 -7 684 228 82 22 chr4 22076953 22077235 -180251112 + L1ME2 LINE L1 2141 2488 -3908 323 318 20 0 chr4 22077269 22077470 -180250877 + L1ME2 LINE L1 2501 2705 -3510 1228 262 57 49 chr4 22077480 22078109 -180250238 + L1ME2 LINE L1 5561 6194 -39 3469 120 11 17 chr4 22078117 22078418 -180249929 - MER1A DNA MER1_type -2173 529 231 2340 118 28 25 chr4 22078418 22078781 -180249566 + THE1B LTR MaLR 1 364 0 3469 120 11 17 chr4 22078781 22079011 -180249336 - MER1A DNA MER1_type -2471 231 1 272 301 32 0 chr4 22080578 22080671 -180247676 + MIR SINE MIR 131 226 -36 411 141 0 24 chr4 22080858 22080943 -180247404 - AluJ/FRAM SINE Alu 0 312 230 1305 222 163 120 chr4 22081962 22082589 -180245758 + MLT1E2 LTR MaLR 1 626 0 5535 261 70 35 chr4 22083008 22083061 -180245286 + L1M2a LINE L1 3 53 -7114 363 60 0 0 chr4 22083061 22083111 -180245236 + (CA)n Simple_repeat Simple_repeat 1 50 0 5535 261 70 35 chr4 22083111 22086660 -180241687 + L1M2a LINE L1 53 3475 -3692 491 115 11 73 chr4 22086686 22086877 -180241470 + (TA)n Simple_repeat Simple_repeat 1 179 0 2327 219 38 25 chr4 22086895 22087356 -180240991 + L1M2a LINE L1 3480 3954 -3213 2330 79 3 3 chr4 22087356 22087661 -180240686 + AluY SINE Alu 1 305 -6 2327 219 38 25 chr4 22087661 22087890 -180240457 + L1M2a LINE L1 3954 4179 -2988 1315 193 0 92 chr4 22087920 22088246 -180240101 + AluJb SINE Alu 9 304 -8 351 65 0 0 chr4 22088246 22088292 -180240055 + (GA)n Simple_repeat Simple_repeat 1 46 0 378 42 0 0 chr4 22088292 22088340 -180240007 + (GGAA)n Simple_repeat Simple_repeat 1 48 0 533 298 96 10 chr4 22088438 22088636 -180239711 + MIR SINE MIR 30 244 -18 428 341 30 0 chr4 22088663 22088830 -180239517 - MIR SINE MIR -5 257 86 767 179 0 14 chr4 22089754 22089894 -180238453 - FLAM_C SINE Alu 0 143 6 380 291 70 70 chr4 22090423 22090708 -180237639 - HAL1b LINE L1 -975 373 89 26 50 0 0 chr4 22091065 22091105 -180237242 + AT_rich Low_complexity Low_complexity 1 40 0 697 236 126 5 chr4 22091963 22092154 -180236193 + MER58C DNA MER1_type 2 215 0 201 39 0 0 chr4 22095028 22095054 -180233293 + (GA)n Simple_repeat Simple_repeat 1 26 0 413 273 20 53 chr4 22095876 22096026 -180232321 - MER5A DNA MER1_type -10 179 35 282 56 0 0 chr4 22096043 22096079 -180232268 + (TG)n Simple_repeat Simple_repeat 1 36 0 218 383 61 9 chr4 22096190 22096305 -180232042 - L2 LINE L2 -575 2739 2619 496 293 56 13 chr4 22097094 22097446 -180230901 + MLT1L LTR MaLR 82 478 -137 231 61 0 0 chr4 22097485 22097518 -180230829 + (TG)n Simple_repeat Simple_repeat 2 34 0 293 331 48 6 chr4 22098014 22098180 -180230167 + MIR SINE MIR 90 262 0 486 274 147 32 chr4 22098663 22098820 -180229527 + MER5A DNA MER1_type 15 189 0 298 216 91 23 chr4 22099052 22099140 -180229207 + MIR SINE MIR 24 117 -145 180 348 37 22 chr4 22100332 22100467 -180227880 - MIR SINE MIR -60 202 66 2203 118 0 16 chr4 22100530 22100834 -180227513 + AluSx SINE Alu 1 299 -13 225 335 78 30 chr4 22102624 22102791 -180225556 - MIR SINE MIR -17 245 71 227 275 29 0 chr4 22103419 22103488 -180224859 - MIR SINE MIR -6 256 186 2065 112 7 7 chr4 22104407 22104710 -180223637 - AluSq SINE Alu -10 303 1 227 310 10 20 chr4 22104711 22104811 -180223536 + MIR SINE MIR 164 262 0 192 152 0 0 chr4 22105219 22105252 -180223095 + L2 LINE L2 3279 3311 -2 229 372 68 14 chr4 22105470 22105618 -180222729 - MIR3 SINE MIR -11 197 42 340 361 45 8 chr4 22105626 22105759 -180222588 - MIR3 SINE MIR -3 205 68 4748 55 26 0 chr4 22106135 22106770 -180221577 + L1PA5 LINE L1 5522 6172 0 984 211 10 19 chr4 22106770 22106978 -180221369 + MER77 LTR ERV1 393 598 -7 809 210 99 8 chr4 22107231 22107493 -180220854 - AluSx SINE Alu -14 288 3 11900 68 8 3 chr4 22108682 22111053 -180217294 + L1P LINE L1 1756 4145 -2001 799 175 13 0 chr4 22111184 22111338 -180217009 + MLT1A2 LTR MaLR 1 156 -218 366 169 40 8 chr4 22111357 22111481 -180216866 + CT-rich Low_complexity Low_complexity 1 128 0 858 176 33 22 chr4 22111503 22111685 -180216662 + MLT1A2 LTR MaLR 189 372 -2 24 0 0 0 chr4 22111703 22111727 -180216620 + AT_rich Low_complexity Low_complexity 1 24 0 761 307 38 4 chr4 22111803 22112041 -180216306 - MIR SINE MIR -1 261 16 962 232 101 37 chr4 22112055 22112491 -180215856 - MLT1C LTR MaLR 0 467 4 226 313 16 8 chr4 22112531 22112659 -180215688 + MLT1A1 LTR MaLR 15 143 -222 14385 27 6 4 chr4 22113337 22115372 -180212975 - L1P2 LINE L1 -558 5597 3560 1096 198 27 31 chr4 22115476 22115733 -180212614 + MLT1A1 LTR MaLR 99 354 -11 200 326 58 0 chr4 22115745 22115831 -180212516 - L2 LINE L2 -619 2695 2605 744 234 41 20 chr4 22115891 22116088 -180212259 + MIR SINE MIR 3 203 -59 26 82 0 0 chr4 22116234 22116295 -180212052 + AT_rich Low_complexity Low_complexity 1 61 0 2289 104 0 0 chr4 22116370 22116657 -180211690 + AluSc SINE Alu 1 287 -22 207 0 0 0 chr4 22117197 22117220 -180211127 + (T)n Simple_repeat Simple_repeat 1 23 0 766 361 81 48 chr4 22117226 22118265 -180210082 - L2 LINE L2 -624 2690 1597 1567 149 17 64 chr4 22118265 22118599 -180209748 + AluJo SINE Alu 3 322 0 766 361 81 48 chr4 22118599 22118841 -180209506 - L2 LINE L2 -1717 1597 1365 520 325 75 13 chr4 22118958 22119186 -180209161 + MLT1G LTR MaLR 35 276 -314 1433 219 53 35 chr4 22119188 22119563 -180208784 - MLT1B LTR MaLR 0 390 9 2178 112 0 0 chr4 22120120 22120416 -180207931 + AluSc SINE Alu 4 299 -10 2450 94 0 0 chr4 22121168 22121477 -180206870 - AluY SINE Alu -2 309 1 256 390 73 12 chr4 22121612 22121776 -180206571 + L2 LINE L2 2550 2723 -591 978 249 24 37 chr4 22121785 22122082 -180206265 + L2 LINE L2 2175 2467 -847 351 277 39 69 chr4 22122085 22122215 -180206132 - MIR SINE MIR -135 127 2 253 398 8 8 chr4 22122494 22122622 -180205725 + MIR3 SINE MIR 34 161 -47 413 235 142 29 chr4 22123175 22123356 -180204991 - MIR SINE MIR -56 206 9 24 0 0 0 chr4 22124721 22124745 -180203602 + AT_rich Low_complexity Low_complexity 1 24 0 229 274 70 27 chr4 22125028 22125169 -180203178 + MIR SINE MIR 56 207 -55 1446 105 0 25 chr4 22125300 22125521 -180202826 + AluSg/x SINE Alu 95 312 0 351 295 102 12 chr4 22126319 22126485 -180201862 - L2 LINE L2 -16 3297 3117 500 286 77 43 chr4 22127087 22127321 -180201026 + L2 LINE L2 1914 2155 -1159 618 324 29 12 chr4 22127331 22127572 -180200775 + MIR SINE MIR 12 256 -6 1333 344 69 20 chr4 22127584 22128410 -180199937 + L2 LINE L2 2179 3047 -266 2038 155 6 3 chr4 22128483 22128824 -180199523 - MLT2C1 LTR ERVL -55 342 1 290 333 39 34 chr4 22128856 22129060 -180199287 + L2 LINE L2 3098 3302 -11 26 0 0 0 chr4 22129627 22129653 -180198694 + AT_rich Low_complexity Low_complexity 1 26 0 225 0 0 0 chr4 22129666 22129691 -180198656 + (TA)n Simple_repeat Simple_repeat 1 25 0 1927 149 3 26 chr4 22129691 22129993 -180198354 - AluSx SINE Alu -17 295 1 329 248 114 0 chr4 22130426 22130573 -180197774 + MLT1J2 LTR MaLR 9 148 -302 311 283 0 0 chr4 22131303 22131423 -180196924 + (TA)n Simple_repeat Simple_repeat 2 121 0 197 83 28 0 chr4 22131482 22131518 -180196829 + (TA)n Simple_repeat Simple_repeat 2 38 0 218 233 0 0 chr4 22131642 22131685 -180196662 + (TAA)n Simple_repeat Simple_repeat 3 45 0 242 231 204 20 chr4 22131686 22131833 -180196514 - MIR SINE MIR 0 262 89 2217 200 155 10 chr4 22131891 22132382 -180195965 + MER68 LTR ERV1 1 562 0 708 300 103 13 chr4 22132422 22132802 -180195545 + MLT1J2 LTR MaLR 37 450 0 409 343 87 27 chr4 22133252 22133471 -180194876 - L2 LINE L2 0 3272 3041 378 341 40 48 chr4 22133482 22133834 -180194513 + L2 LINE L2 2432 2780 -534 187 294 119 57 chr4 22134256 22134433 -180193914 - L2 LINE L2 -262 3010 2823 308 317 0 0 chr4 22134468 22134550 -180193797 + L2 LINE L2 3226 3307 -6 243 0 0 0 chr4 22134584 22134611 -180193736 + (A)n Simple_repeat Simple_repeat 1 27 0 236 349 65 62 chr4 22134611 22134914 -180193433 - L2 LINE L2 -561 2753 2447 1973 152 7 0 chr4 22134914 22135210 -180193137 - AluSx SINE Alu -14 298 1 236 349 65 62 chr4 22135210 22135247 -180193100 - L2 LINE L2 -867 2447 2412 1777 159 0 0 chr4 22135450 22135733 -180192614 + AluSx SINE Alu 1 283 -29 198 0 0 0 chr4 22135737 22135759 -180192588 + (CACAA)n Simple_repeat Simple_repeat 4 25 0 246 184 0 0 chr4 22135809 22135858 -180192489 - MADE1 DNA Mariner 0 80 32 740 122 0 0 chr4 22136160 22136292 -180192055 + AluSg/x SINE Alu 176 307 0 460 136 0 12 chr4 22136342 22136423 -180191924 - MADE1 DNA Mariner 0 80 1 184 339 15 0 chr4 22137002 22137067 -180191280 - MIR SINE MIR -61 147 82 678 228 29 19 chr4 22137935 22138141 -180190206 + LTR7 LTR ERV1 238 445 -5 835 290 60 39 chr4 22138204 22138587 -180189760 + MLT1E3 LTR MaLR 200 621 -3 212 86 29 0 chr4 22139189 22139224 -180189123 + (CA)n Simple_repeat Simple_repeat 2 37 0 668 286 17 0 chr4 22139348 22139523 -180188824 + MER5B DNA MER1_type 1 178 0 942 175 0 29 chr4 22139862 22140033 -180188314 + MER5A DNA MER1_type 1 166 -23 291 342 12 19 chr4 22140806 22141053 -180187294 + GA-rich Low_complexity Low_complexity 1 245 0 229 383 25 25 chr4 22142336 22142456 -180185891 + L2 LINE L2 3132 3251 -21 4506 88 32 1 chr4 22143569 22144230 -180184117 - L1PA11 LINE L1 0 6174 5494 695 165 0 0 chr4 22144434 22144577 -180183770 + AluJb SINE Alu 167 309 0 7809 171 11 9 chr4 22144633 22147180 -180181167 + L1PB1 LINE L1 3607 6150 -1 277 269 0 0 chr4 22147549 22147627 -180180720 - MER103 DNA DNA -87 79 2 394 304 48 18 chr4 22149909 22150077 -180178270 - MIR SINE MIR -8 254 82 224 352 67 0 chr4 22150265 22150370 -180177977 + L2 LINE L2 1753 1864 -1450 406 139 212 16 chr4 22150373 22150463 -180177884 + MLT1B LTR MaLR 6 109 -265 2441 82 3 9 chr4 22150463 22150778 -180177569 + AluSq SINE Alu 1 313 0 406 139 212 16 chr4 22150778 22150794 -180177553 + MLT1B LTR MaLR 109 121 -253 714 185 17 5 chr4 22150816 22150965 -180177382 + MLT1B LTR MaLR 240 390 0 507 232 40 81 chr4 22151058 22151256 -180177091 - MIR SINE MIR -65 197 8 580 281 9 62 chr4 22151295 22151519 -180176828 - MIR SINE MIR -44 218 7 2138 145 6 0 chr4 22152663 22152974 -180175373 - AluSq SINE Alu 0 313 1 2066 133 0 0 chr4 22154507 22154823 -180173524 - AluSg SINE Alu 0 318 3 3115 106 12 33 chr4 22155190 22155566 -180172781 + L1PA13 LINE L1 5678 6043 -120 3230 162 32 68 chr4 22155566 22156283 -180172064 - LTR8 LTR ERV1 0 691 1 3115 106 12 33 chr4 22156283 22156395 -180171952 + L1PA13 LINE L1 6043 6156 -7 312 311 0 0 chr4 22156482 22156572 -180171775 + L1MC4 LINE L1 6614 6703 -1339 350 293 0 13 chr4 22156582 22156739 -180171608 + (TATATG)n Simple_repeat Simple_repeat 5 159 0 239 259 47 0 chr4 22156751 22156836 -180171511 + L1MC4 LINE L1 6615 6703 -1339 213 233 33 0 chr4 22156837 22156927 -180171420 + (TA)n Simple_repeat Simple_repeat 1 93 0 489 257 74 64 chr4 22156928 22157130 -180171217 - MIR SINE MIR -57 205 2 268 366 24 16 chr4 22157620 22157743 -180170604 - MIR SINE MIR -108 154 31 26 0 0 0 chr4 22157939 22157965 -180170382 + AT_rich Low_complexity Low_complexity 1 26 0 2062 203 67 9 chr4 22157966 22158502 -180169845 + L1MA9 LINE L1 5704 6270 -42 7506 195 18 19 chr4 22158532 22160271 -180168076 + L1PA16 LINE L1 3477 5207 -959 2372 47 40 0 chr4 22160271 22160569 -180167778 + L1PA4 LINE L1 5846 6155 0 7506 195 18 19 chr4 22160569 22161527 -180166820 + L1PA16 LINE L1 5207 6165 -1 273 230 137 108 chr4 22161847 22161986 -180166361 + MIR SINE MIR 108 250 -12 204 146 0 49 chr4 22161954 22161995 -180166352 + L2 LINE L2 3264 3302 -11 * 266 323 0 10 chr4 22162148 22162247 -180166100 + MIR SINE MIR 92 189 -73 743 309 42 8 chr4 22162334 22162570 -180165777 + MIR SINE MIR 18 261 -1 321 259 101 29 chr4 22162533 22162672 -180165675 - MIR SINE MIR -33 229 81 * 2092 135 125 13 chr4 22162672 22163057 -180165290 + MSTA LTR MaLR 1 428 0 530 269 8 8 chr4 22163656 22163790 -180164557 - L2 LINE L2 0 3313 3180 516 344 11 0 chr4 22163784 22163967 -180164380 - L2 LINE L2 -981 2333 2149 * 21 0 0 0 chr4 22163998 22164019 -180164328 + AT_rich Low_complexity Low_complexity 1 21 0 348 356 68 5 chr4 22165702 22165907 -180162440 + MIR SINE MIR 2 219 -43 755 286 64 5 chr4 22166599 22166819 -180161528 - MIR SINE MIR 0 262 30 272 292 42 46 chr4 22167130 22167305 -180161042 + MIR SINE MIR 13 189 -73 678 234 59 42 chr4 22167790 22168029 -180160318 + MIR SINE MIR 15 257 -5 182 333 0 42 chr4 22168846 22168918 -180159429 - MIR SINE MIR -74 134 66 2266 73 7 23 chr4 22169110 22169410 -180158937 - AluSc SINE Alu -14 295 1 399 305 134 6 chr4 22169557 22169721 -180158626 + LTR33 LTR ERVL 39 223 -298 550 266 126 22 chr4 22169752 22169974 -180158373 + LTR33 LTR ERVL 276 520 -1 315 295 98 18 chr4 22169997 22170109 -180158238 + MIR SINE MIR 22 142 -66 210 383 0 26 chr4 22170341 22170456 -180157891 + MIR SINE MIR 33 144 -118 283 259 306 7 chr4 22170622 22170769 -180157578 + MIR SINE MIR 13 203 -59 449 290 140 45 chr4 22170878 22171213 -180157134 + L2 LINE L2 2945 3311 -2 270 286 64 64 chr4 22172383 22172649 -180155698 + L1ME LINE L1 5616 5881 -240 347 196 105 98 chr4 22173526 22173587 -180154760 + L2 LINE L2 3168 3227 -86 186 71 0 0 chr4 22173587 22173615 -180154732 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 347 196 105 98 chr4 22173615 22173696 -180154651 + L2 LINE L2 3227 3311 -2 1815 154 85 6 chr4 22174219 22174550 -180153797 + MLT2C1 LTR ERVL 1 357 -40 261 129 43 29 chr4 22174552 22174622 -180153725 + (TATATG)n Simple_repeat Simple_repeat 1 71 0 279 105 0 0 chr4 22174628 22174666 -180153681 + MLT2C1 LTR ERVL 360 397 0 312 283 148 49 chr4 22176381 22176604 -180151743 + L2 LINE L2 2701 2945 -369 192 314 0 0 chr4 22176639 22176690 -180151657 + L2 LINE L2 3222 3272 0 1252 76 5 103 chr4 22176761 22176984 -180151363 - L1PA8 LINE L1 -13 6159 5959 2170 119 24 0 chr4 22177246 22177540 -180150807 - AluSx SINE Alu -11 301 1 3274 134 59 35 chr4 22177648 22178239 -180150108 + LTR8A LTR ERV1 123 727 0 252 268 103 21 chr4 22178239 22178336 -180150011 + MIR SINE MIR 155 259 -3 315 341 39 16 chr4 22178364 22178493 -180149854 + L2 LINE L2 2916 3047 -225 426 348 59 16 chr4 22178629 22178951 -180149396 + L1MEc LINE L1 772 1107 -6031 1478 290 98 27 chr4 22179391 22179944 -180148403 + L1MEc LINE L1 1331 1843 -5295 234 0 0 0 chr4 22179944 22179970 -180148377 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 1478 290 98 27 chr4 22179970 22180792 -180147555 + L1MEc LINE L1 1843 2991 -4147 316 315 22 0 chr4 22180800 22180889 -180147458 + L2 LINE L2 3222 3312 -1 524 307 27 70 chr4 22182654 22182983 -180145364 - L2 LINE L2 0 3313 2999 189 217 22 0 chr4 22183017 22183063 -180145284 + L2 LINE L2 3261 3307 -6 2144 107 0 0 chr4 22183865 22184170 -180144177 + AluSc SINE Alu 1 305 0 581 88 0 0 chr4 22184306 22184386 -180143961 - MADE1 DNA Mariner 0 80 1 205 189 16 74 chr4 22184916 22185106 -180143241 + (TCTCTG)n Simple_repeat Simple_repeat 2 180 0 296 291 55 39 chr4 22185526 22185653 -180142694 - MER94 DNA DNA 0 134 6 210 313 30 0 chr4 22185894 22185961 -180142386 + MIR SINE MIR 53 121 -141 1924 153 0 3 chr4 22185963 22186264 -180142083 - AluJo SINE Alu -12 300 1 25 0 0 0 chr4 22186406 22186431 -180141916 + AT_rich Low_complexity Low_complexity 1 25 0 1951 100 0 0 chr4 22186462 22186712 -180141635 - AluSq SINE Alu -54 259 10 432 263 8 34 chr4 22187101 22187219 -180141128 - L2 LINE L2 -499 2815 2701 189 288 38 50 chr4 22187258 22187338 -180141009 - L2 LINE L2 -86 3227 3149 369 291 108 44 chr4 22187456 22187659 -180140688 - MIR SINE MIR -44 218 3 245 233 68 68 chr4 22187946 22188049 -180140298 + MIR SINE MIR 121 223 -39 188 296 91 45 chr4 22188177 22188265 -180140082 - L2 LINE L2 0 3313 3222 278 285 41 65 chr4 22188302 22188425 -180139922 + MER5B DNA MER1_type 9 128 -50 533 298 29 22 chr4 22188477 22188747 -180139600 + Charlie8 DNA MER1_type 3 265 -2152 327 193 0 0 chr4 22188777 22188834 -180139513 + Charlie8 DNA MER1_type 1351 1407 -1010 1768 224 57 9 chr4 22188873 22189314 -180139033 + MLT1C LTR MaLR 6 467 0 319 294 25 0 chr4 22189830 22189949 -180138398 + L2 LINE L2 2934 3055 -258 1592 168 28 88 chr4 22190021 22190419 -180137928 + MLT1B LTR MaLR 1 374 -16 2465 171 77 21 chr4 22190419 22190898 -180137449 + MLT2B2 LTR ERVL 1 506 -9 484 281 54 30 chr4 22191060 22191227 -180137120 + L2 LINE L2 3120 3290 -23 222 106 30 30 chr4 22191281 22191347 -180137000 + (TCTA)n Simple_repeat Simple_repeat 4 69 0 285 325 122 21 chr4 22191364 22191552 -180136795 - MIR SINE MIR -7 255 49 308 289 48 0 chr4 22192937 22193020 -180135327 + L2 LINE L2 3227 3313 0 410 264 186 0 chr4 22193894 22194023 -180134324 + MER5A DNA MER1_type 36 188 -1 510 230 79 0 chr4 22194207 22194333 -180134014 + MIR SINE MIR 56 191 -71 2248 122 0 0 chr4 22195048 22195360 -180132987 - AluSq SINE Alu -1 312 1 568 101 0 0 chr4 22195904 22195983 -180132364 - MER4E LTR ERV1 -154 612 534 2588 102 3 0 chr4 22196010 22196364 -180131983 + MER4E LTR ERV1 412 766 0 315 164 0 0 chr4 22196848 22196909 -180131438 + (TA)n Simple_repeat Simple_repeat 1 61 0 195 100 0 0 chr4 22197434 22197464 -180130883 + (GGA)n Simple_repeat Simple_repeat 3 32 0 1451 161 28 35 chr4 22197622 22197907 -180130440 - MLT1B LTR MaLR 0 390 108 1930 151 0 31 chr4 22198041 22198360 -180129987 - AluSg SINE Alu -1 309 1 609 175 26 0 chr4 22198424 22198538 -180129809 - MLT1B LTR MaLR -272 118 2 360 200 30 0 chr4 22198586 22198686 -180129661 + CT-rich Low_complexity Low_complexity 2 104 0 194 281 16 78 chr4 22199368 22199496 -180128851 - L2 LINE L2 -849 2465 2346 * 413 245 38 19 chr4 22199495 22199601 -180128746 + L2 LINE L2 3200 3307 -6 335 311 60 20 chr4 22199879 22200030 -180128317 + MIR SINE MIR 52 208 -54 1260 52 0 0 chr4 22200256 22200409 -180127938 - AluY SINE Alu -10 301 149 2274 94 10 0 chr4 22200636 22200935 -180127412 - AluSg SINE Alu -8 302 1 453 296 21 32 chr4 22201289 22201475 -180126872 + MIR SINE MIR 79 262 0 402 235 66 12 chr4 22201520 22201686 -180126661 + L1ME4a LINE L1 5722 5896 -225 231 133 0 0 chr4 22202798 22202843 -180125504 + (TG)n Simple_repeat Simple_repeat 2 46 0 820 206 15 15 chr4 22204760 22204964 -180123383 + L1MB5 LINE L1 4171 4374 -1772 4066 188 30 29 chr4 22205013 22206101 -180122246 + L1MB5 LINE L1 5086 6173 -1 749 219 93 61 chr4 22206211 22206414 -180121933 + MIR SINE MIR 7 221 -41 2443 84 0 3 chr4 22206414 22206723 -180121624 + AluSq SINE Alu 1 308 -5 749 219 93 61 chr4 22206723 22206765 -180121582 + MIR SINE MIR 221 260 -2 1769 166 75 7 chr4 22206810 22207117 -180121230 + MLT1A1 LTR MaLR 23 350 -15 23 0 0 0 chr4 22207121 22207144 -180121203 + AT_rich Low_complexity Low_complexity 1 23 0 204 171 24 0 chr4 22208215 22208256 -180120091 + (TA)n Simple_repeat Simple_repeat 1 42 0 612 0 0 0 chr4 22209526 22209594 -180118753 + (TA)n Simple_repeat Simple_repeat 1 68 0 1879 117 33 4 chr4 22209597 22209870 -180118477 - AluSc SINE Alu -28 281 1 342 200 50 0 chr4 22210254 22210334 -180118013 + AluS SINE Alu 1 84 -219 199 330 230 21 chr4 22210647 22210886 -180117461 - L3b LINE CR1 0 1583 1295 338 330 9 0 chr4 22211105 22211211 -180117136 - L2 LINE L2 -10 3303 3197 2412 75 0 0 chr4 22211968 22212273 -180116074 + AluY SINE Alu 4 308 -3 184 154 0 51 chr4 22212323 22212362 -180115985 + L2 LINE L2 3268 3304 -9 231 312 44 92 chr4 22213196 22213253 -180115094 - L2 LINE L2 -568 2746 2688 2241 99 10 0 chr4 22213253 22213557 -180114790 + AluSg SINE Alu 1 307 -3 231 312 44 92 chr4 22213557 22213749 -180114598 - L2 LINE L2 -626 2688 2509 342 200 44 59 chr4 22214436 22214571 -180113776 + Charlie2 DNA MER1_type 2714 2846 -16 210 313 0 30 chr4 22214606 22214673 -180113674 + MIR SINE MIR 31 95 -113 1994 196 21 18 chr4 22214677 22215060 -180113287 + MLT2B1 LTR ERVL 1 376 -38 462 114 0 0 chr4 22215060 22215130 -180113217 + (TCTA)n Simple_repeat Simple_repeat 2 71 0 1994 196 21 18 chr4 22215130 22215170 -180113177 + MLT2B1 LTR ERVL 376 414 0 253 308 0 0 chr4 22215177 22215242 -180113105 + MIR3 SINE MIR 98 162 -46 192 125 0 0 chr4 22215497 22215529 -180112818 + (TG)n Simple_repeat Simple_repeat 1 32 0 286 370 44 5 chr4 22215546 22215749 -180112598 - MARNA DNA Mariner -366 220 10 216 195 169 13 chr4 22217056 22217133 -180111214 + L2 LINE L2 3184 3272 0 206 333 173 0 chr4 22217339 22217414 -180110933 - L2 LINE L2 -48 3224 3137 380 219 135 0 chr4 22217597 22217693 -180110654 - MER105 DNA DNA -45 159 51 3215 106 101 4 chr4 22217773 22218266 -180110081 + MER41A LTR ERV1 14 554 0 2267 212 27 25 chr4 22218297 22218778 -180109569 - MER68 LTR ERV1 -80 482 1 2050 131 6 22 chr4 22219506 22219820 -180108527 - AluSg SINE Alu -1 309 1 9648 207 54 19 chr4 22220838 22223720 -180104627 + L1MA9 LINE L1 2806 5797 -515 327 65 0 0 chr4 22223720 22223766 -180104581 + (CA)n Simple_repeat Simple_repeat 2 47 0 9648 207 54 19 chr4 22223766 22223782 -180104565 + L1MA9 LINE L1 5797 5811 -501 575 206 0 0 chr4 22223883 22223980 -180104367 - MER7A DNA MER2_type -251 95 1 634 193 28 42 chr4 22223980 22224192 -180104155 + L1MA9 LINE L1 5905 6113 -199 236 238 0 81 chr4 22224343 22224528 -180103819 + (TATAA)n Simple_repeat Simple_repeat 3 172 0 * 278 268 36 18 chr4 22224459 22224627 -180103720 + (TATAG)n Simple_repeat Simple_repeat 4 174 0 210 270 11 65 chr4 22224541 22224726 -180103621 + (TATAA)n Simple_repeat Simple_repeat 3 177 0 * 406 219 73 46 chr4 22224750 22224901 -180103446 + L1MA9 LINE L1 6119 6273 -39 2013 153 7 0 chr4 22225186 22225493 -180102854 + AluSx SINE Alu 3 311 -1 180 111 0 0 chr4 22225957 22225984 -180102363 + (A)n Simple_repeat Simple_repeat 1 27 0 225 383 30 35 chr4 22226593 22226823 -180101524 + L2 LINE L2 1942 2170 -1144 * 585 208 28 56 chr4 22226817 22226995 -180101352 - L2 LINE L2 -42 3271 3099 1332 221 83 47 chr4 22226996 22227439 -180100908 - MLT1C LTR MaLR 0 467 9 266 333 176 15 chr4 22227502 22227763 -180100584 + L2 LINE L2 2301 2603 -711 345 280 63 14 chr4 22228130 22228273 -180100074 - MIR SINE MIR -19 243 94 229 274 0 0 chr4 22228568 22228619 -180099728 - L2 LINE L2 0 3272 3222 2542 77 0 0 chr4 22229443 22229754 -180098593 - AluY SINE Alu 0 311 1 193 390 38 9 chr4 22231104 22231317 -180097030 + L2 LINE L2 1763 1981 -1333 2110 115 14 0 chr4 22231584 22231892 -180096455 - AluSc SINE Alu 0 312 1 326 373 84 3 chr4 22231894 22232178 -180096169 + L2 LINE L2 2356 2662 -652 367 344 60 67 chr4 22232316 22232647 -180095700 + L2 LINE L2 2924 3252 -20 361 348 70 0 chr4 22233110 22233297 -180095050 + MIR SINE MIR 21 220 -42 390 253 129 47 chr4 22234156 22234326 -180094021 - L2 LINE L2 -13 3300 3117 216 336 136 9 chr4 22234517 22234627 -180093720 - MIR SINE MIR -115 147 24 430 291 8 8 chr4 22234711 22234838 -180093509 - MIR SINE MIR -48 214 88 2550 74 0 0 chr4 22234881 22235192 -180093155 - AluSq SINE Alu -2 311 1 506 290 118 5 chr4 22235728 22235914 -180092433 - MIR SINE MIR -15 247 41 250 233 89 44 chr4 22236230 22236320 -180092027 + MIR SINE MIR 87 180 -82 432 198 167 62 chr4 22237323 22237485 -180090862 + MER5A DNA MER1_type 11 189 0 435 346 135 10 chr4 22238240 22238750 -180089597 - L2 LINE L2 0 3313 2745 181 238 0 24 chr4 22238897 22238939 -180089408 - MIR SINE MIR -14 248 208 221 336 36 27 chr4 22239108 22239218 -180089129 + MER5A DNA MER1_type 52 162 -27 1992 140 0 0 chr4 22239403 22239689 -180088658 - AluSx SINE Alu -26 286 1 349 267 119 20 chr4 22240112 22240213 -180088134 + MIR SINE MIR 40 150 -58 5196 22 0 0 chr4 22241630 22242251 -180086096 + L1PA3 LINE L1 5544 6164 0 237 159 114 11 chr4 22242266 22242354 -180085993 - MER69 DNA AcHobo -124 2402 2306 770 243 11 23 chr4 22243160 22243337 -180085010 + MLT1A2 LTR MaLR 17 191 -183 770 211 62 10 chr4 22243370 22243564 -180084783 + MLT1B LTR MaLR 187 390 0 236 338 15 0 chr4 22244191 22244259 -180084088 + L2 LINE L2 3228 3296 -17 29 0 0 0 chr4 22244901 22244930 -180083417 + AT_rich Low_complexity Low_complexity 1 29 0 1779 207 19 11 chr4 22244975 22245337 -180083010 - MLT1A1 LTR MaLR 0 365 1 198 267 0 144 chr4 22245562 22245612 -180082735 + L2 LINE L2 3237 3270 -43 1644 156 27 34 chr4 22245612 22245907 -180082440 + AluSx SINE Alu 3 295 -17 198 267 0 144 chr4 22245907 22245946 -180082401 + L2 LINE L2 3270 3313 0 441 331 40 0 chr4 22246886 22247034 -180081313 - MER117 DNA MER1_type -43 154 1 218 254 17 17 chr4 22247540 22247599 -180080748 - L3 LINE CR1 -513 1064 1006 312 301 44 22 chr4 22247644 22247780 -180080567 + MIR3 SINE MIR 55 193 -15 1953 94 0 4 chr4 22248481 22248736 -180079611 + AluY SINE Alu 39 292 -19 219 204 0 54 chr4 22249239 22249332 -180079015 + A-rich Low_complexity Low_complexity 3 90 0 393 255 10 10 chr4 22249615 22249713 -180078634 - MIR SINE MIR -118 144 47 489 317 154 9 chr4 22251975 22252202 -180076145 + MIR SINE MIR 3 262 0 377 306 223 8 chr4 22252895 22253137 -180075210 - L2 LINE L2 0 3313 3020 214 273 73 0 chr4 22255154 22255209 -180073138 + MIR SINE MIR 94 152 -110 2144 117 3 19 chr4 22255261 22255577 -180072770 + AluSx SINE Alu 1 311 -1 23 0 0 0 chr4 22256116 22256139 -180072208 + AT_rich Low_complexity Low_complexity 1 23 0 279 308 119 53 chr4 22256293 22256520 -180071827 - MIR SINE MIR -12 250 9 201 344 86 20 chr4 22258715 22258866 -180069481 + MIR SINE MIR 7 167 -95 373 375 58 17 chr4 22259043 22259283 -180069064 - MIR SINE MIR -11 251 2 7318 46 3 0 chr4 22259503 22261161 -180067186 + L1PA6 LINE L1 4492 6153 -1 283 315 113 6 chr4 22261702 22261767 -180066580 + L1ME LINE L1 5516 5573 -548 252 59 0 0 chr4 22261767 22261801 -180066546 + (TG)n Simple_repeat Simple_repeat 1 34 0 283 315 113 6 chr4 22261801 22262062 -180066285 + L1ME LINE L1 5573 5877 -244 2443 58 0 0 chr4 22262169 22262463 -180065884 - AluY SINE Alu -17 294 1 874 183 22 79 chr4 22262712 22262941 -180065406 + MER20 DNA MER1_type 4 219 0 25 0 0 0 chr4 22262955 22262980 -180065367 + AT_rich Low_complexity Low_complexity 1 25 0 319 354 91 52 chr4 22263094 22263458 -180064889 - L2 LINE L2 -83 3189 2812 6991 146 16 15 chr4 22263623 22264875 -180063472 - Tigger1 DNA MER2_type 0 2418 1166 239 196 43 43 chr4 22264888 22264980 -180063367 - LTR30 LTR ERV1 -79 643 552 1376 144 0 0 chr4 22265007 22265236 -180063111 + Tigger1 DNA MER2_type 1634 1862 -556 6383 144 28 19 chr4 22265236 22266380 -180061967 - Tigger1 DNA MER2_type -1259 1159 6 193 311 14 40 chr4 22267012 22267086 -180061261 + L2 LINE L2 3201 3272 0 696 259 47 30 chr4 22267165 22267401 -180060946 - MIR SINE MIR -11 251 12 930 252 102 16 chr4 22267970 22268284 -180060063 + MER58B DNA MER1_type 1 341 0 840 219 39 6 chr4 22268376 22268554 -180059793 + MER5A DNA MER1_type 1 184 -5 388 311 132 20 chr4 22268677 22268843 -180059504 - MIR SINE MIR -62 146 3 2147 207 50 32 chr4 22268861 22269057 -180059290 + MER90 LTR ERV1 2 193 -382 2253 114 3 0 chr4 22269057 22269355 -180058992 - AluSp SINE Alu -14 299 1 2147 207 50 32 chr4 22269355 22269718 -180058629 + MER90 LTR ERV1 193 571 -4 189 340 0 0 chr4 22270629 22270679 -180057668 - L2 LINE L2 -20 3252 3203 391 361 21 82 chr4 22270853 22271144 -180057203 + L2 LINE L2 2993 3265 -7 226 247 86 21 chr4 22271174 22271267 -180057080 + L1MC5 LINE L1 7833 7931 -30 213 240 60 0 chr4 22271564 22271614 -180056733 + L2 LINE L2 2598 2650 -664 2514 56 0 0 chr4 22271614 22271920 -180056427 - AluY SINE Alu -5 306 1 225 287 56 98 chr4 22272376 22272519 -180055828 + L2 LINE L2 3155 3291 -22 315 362 33 20 chr4 22273725 22273877 -180054470 + MIR3 SINE MIR 6 159 -49 317 280 65 65 chr4 22277376 22277590 -180050757 + MIR SINE MIR 40 253 -9 279 283 0 147 chr4 22277541 22277739 -180050608 - MIR SINE MIR 0 262 94 * 255 344 102 8 chr4 22277781 22277909 -180050438 - L2 LINE L2 0 3272 3133 323 302 139 0 chr4 22278109 22278278 -180050069 + MIR SINE MIR 36 226 -36 442 182 114 0 chr4 22279361 22279449 -180048898 + FLAM_C SINE Alu 21 118 -25 464 318 35 12 chr4 22279684 22279857 -180048490 - MIR SINE MIR -35 227 51 413 314 73 65 chr4 22279871 22279941 -180048406 - MIR SINE MIR 0 262 194 2444 59 0 10 chr4 22279941 22280247 -180048100 + AluY SINE Alu 1 303 -8 413 314 73 65 chr4 22280247 22280424 -180047923 - MIR SINE MIR -68 194 13 878 206 93 102 chr4 22280932 22281499 -180046848 + MER34B LTR ERV1 4 565 0 28 29 0 0 chr4 22281527 22281562 -180046785 + AT_rich Low_complexity Low_complexity 1 35 0 1780 172 40 0 chr4 22281912 22282208 -180046139 + AluJb SINE Alu 1 308 -4 2091 138 136 5 chr4 22333174 22333550 -179994797 + MSTA LTR MaLR 4 428 0 466 231 35 14 chr4 22333551 22333694 -179994653 - MER104 DNA Tc2 -8 172 27 261 301 66 66 chr4 22333706 22333902 -179994445 + L2 LINE L2 2524 2719 -595 273 277 102 97 chr4 22334026 22334387 -179993960 + L2 LINE L2 2949 3311 -2 22 0 0 0 chr4 22334676 22334698 -179993649 + AT_rich Low_complexity Low_complexity 1 22 0 224 346 0 0 chr4 22335240 22335318 -179993029 - L2 LINE L2 -5 3267 3190 218 467 0 0 chr4 22335435 22335540 -179992807 - MIR SINE MIR -60 148 44 1939 175 20 6 chr4 22335628 22335983 -179992364 - MLT1A1 LTR MaLR -2 363 4 431 293 24 8 chr4 22335998 22336121 -179992226 - MIR SINE MIR -106 156 32 273 277 50 10 chr4 22336201 22336302 -179992045 - MIR SINE MIR -4 258 154 2399 74 0 0 chr4 22337622 22337920 -179990427 + AluY SINE Alu 1 298 -13 1131 252 41 21 chr4 22338365 22338655 -179989692 + MLT1F LTR MaLR 8 303 -239 439 250 129 0 chr4 22338658 22338782 -179989565 - MIR SINE MIR -121 141 2 22 0 0 0 chr4 22340369 22340391 -179987956 + AT_rich Low_complexity Low_complexity 1 22 0 1426 192 17 10 chr4 22340885 22341177 -179987170 + L1MB8 LINE L1 5613 5906 -278 8396 162 21 12 chr4 22341190 22342629 -179985718 + Tigger1 DNA MER2_type 14 1466 -952 5925 90 18 8 chr4 22342630 22343464 -179984883 + L1PA11 LINE L1 5333 6174 0 5008 139 43 31 chr4 22343466 22344090 -179984257 + Tigger1 DNA MER2_type 1465 2105 -313 2049 146 0 7 chr4 22344090 22344399 -179983948 + AluSx SINE Alu 1 307 -5 5008 139 43 31 chr4 22344399 22344705 -179983642 + Tigger1 DNA MER2_type 2105 2406 -12 2003 150 31 3 chr4 22344798 22345152 -179983195 - L1PB4 LINE L1 -9 6147 5784 214 291 12 12 chr4 22345157 22345243 -179983104 + (TA)n Simple_repeat Simple_repeat 1 86 0 619 77 121 0 chr4 22345244 22345335 -179983012 - L1PB4 LINE L1 -374 5782 5681 667 232 133 4 chr4 22345341 22345574 -179982773 + L1MB8 LINE L1 5915 6177 -1 214 260 0 0 chr4 22346081 22346131 -179982216 + L2 LINE L2 3264 3313 0 286 291 126 50 chr4 22346204 22346386 -179981961 - L2 LINE L2 -899 2415 2220 318 324 44 28 chr4 22346943 22347125 -179981222 + MIR SINE MIR 21 205 -57 321 45 101 0 chr4 22347126 22347215 -179981132 + (TA)n Simple_repeat Simple_repeat 2 99 0 24 77 0 0 chr4 22347270 22347322 -179981025 + AT_rich Low_complexity Low_complexity 1 52 0 200 83 0 28 chr4 22347393 22347429 -179980918 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 43900 44 1 3 chr4 22347429 22353576 -179974771 - L1PA3 LINE L1 -24 6131 1 1409 200 82 13 chr4 22354461 22354766 -179973581 + MLT1A1 LTR MaLR 40 365 0 514 27 14 14 chr4 22355847 22355920 -179972427 + (TCTA)n Simple_repeat Simple_repeat 2 74 0 216 0 0 0 chr4 22357277 22357301 -179971046 + (A)n Simple_repeat Simple_repeat 1 24 0 208 139 0 0 chr4 22358330 22358366 -179969981 + (A)n Simple_repeat Simple_repeat 1 36 0 579 314 13 31 chr4 22358460 22358689 -179969658 - MIR SINE MIR -20 242 18 520 251 25 43 chr4 22359889 22360052 -179968295 + MER69A DNA AcHobo 1 160 -17 251 114 23 0 chr4 22360172 22360216 -179968131 + (TTCA)n Simple_repeat Simple_repeat 1 45 0 22 35 0 0 chr4 22360773 22360802 -179967545 + AT_rich Low_complexity Low_complexity 1 29 0 451 281 109 31 chr4 22360821 22361013 -179967334 - MIR SINE MIR -25 237 31 343 248 200 0 chr4 22361013 22361118 -179967229 - MER5B DNA MER1_type 0 178 53 25 0 0 0 chr4 22361118 22361143 -179967204 + GC_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr4 22361258 22361280 -179967067 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr4 22361691 22361715 -179966632 + GC_rich Low_complexity Low_complexity 1 24 0 2009 226 10 18 chr4 22362576 22363040 -179965307 + MER89 LTR ERV1 1 559 0 5124 200 14 38 chr4 22363854 22365413 -179962934 + L1MC1 LINE L1 4818 6333 0 188 35 35 0 chr4 22365817 22365846 -179962501 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 959 191 6 6 chr4 22366035 22366213 -179962134 + MLT1A2 LTR MaLR 1 178 -196 437 309 76 16 chr4 22367690 22367927 -179960420 + MIR SINE MIR 5 248 -14 1521 130 165 29 chr4 22368149 22368464 -179959883 + THE1C LTR MaLR 1 358 -17 245 62 0 0 chr4 22370151 22370183 -179958164 + MLT1J1 LTR MaLR 407 438 -8 2177 183 5 8 chr4 22370999 22371387 -179956960 + MLT1B LTR MaLR 4 390 0 205 325 89 16 chr4 22371406 22371529 -179956818 - L2 LINE L2 0 3272 3141 1590 177 115 65 chr4 22371600 22371758 -179956589 + MLT1C LTR MaLR 2 151 -316 1651 208 77 61 chr4 22371758 22371801 -179956546 - MLT2B1 LTR ERVL 0 520 479 306 73 0 0 chr4 22371801 22371842 -179956505 + (TG)n Simple_repeat Simple_repeat 2 42 0 1651 208 77 61 chr4 22371842 22372308 -179956039 - MLT2B1 LTR ERVL -41 479 3 1590 177 115 65 chr4 22372308 22372583 -179955764 + MLT1C LTR MaLR 151 457 -10 26 30 0 0 chr4 22373154 22373187 -179955160 + AT_rich Low_complexity Low_complexity 1 33 0 382 378 40 12 chr4 22373716 22373965 -179954382 + MIR SINE MIR 1 256 -6 360 0 0 0 chr4 22375013 22375053 -179953294 + (TA)n Simple_repeat Simple_repeat 1 40 0 207 0 0 0 chr4 22375350 22375373 -179952974 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 282 342 45 0 chr4 22375462 22375573 -179952774 - L3 LINE CR1 -172 1405 1290 7391 169 9 57 chr4 22375573 22377079 -179951268 + L1M1 LINE L1 10 1786 -5779 28 61 0 0 chr4 22377250 22377299 -179951048 + AT_rich Low_complexity Low_complexity 1 49 0 272 291 0 47 chr4 22377389 22377475 -179950872 - L3 LINE CR1 -486 1091 1010 602 346 134 17 chr4 22377478 22378164 -179950183 + L2 LINE L2 2552 3313 0 573 256 68 31 chr4 22378212 22378403 -179949944 + MIR SINE MIR 18 215 -47 464 301 68 41 chr4 22378455 22378674 -179949673 - L3 LINE CR1 -608 969 745 3141 234 114 24 chr4 22379018 22379951 -179948396 - L1MD2 LINE L1 -14 6345 5498 2451 87 0 0 chr4 22379951 22380261 -179948086 - AluY SINE Alu -1 310 1 3141 234 114 24 chr4 22380261 22380913 -179947434 - L1MD2 LINE L1 -861 5498 4600 30857 47 4 3 chr4 22380934 22385571 -179942776 - L1PA5 LINE L1 -5 6149 1506 1769 158 16 26 chr4 22386127 22386431 -179941916 + AluSx SINE Alu 1 301 -11 30 0 0 0 chr4 22386431 22386461 -179941886 + AT_rich Low_complexity Low_complexity 1 30 0 452 320 41 12 chr4 22386826 22386998 -179941349 + MIR SINE MIR 37 213 -49 22 70 0 0 chr4 22387060 22387103 -179941244 + AT_rich Low_complexity Low_complexity 1 43 0 1244 214 50 36 chr4 22387569 22387929 -179940418 - MLT1A1 LTR MaLR 0 365 1 2017 196 35 51 chr4 22388864 22389373 -179938974 + MLT1D LTR MaLR 5 505 0 569 278 100 39 chr4 22389415 22389645 -179938702 + MIR SINE MIR 19 262 0 211 357 24 0 chr4 22390005 22390089 -179938258 + L2 LINE L2 3219 3304 -9 21 0 0 0 chr4 22390950 22390971 -179937376 + AT_rich Low_complexity Low_complexity 1 21 0 432 0 0 0 chr4 22392152 22392200 -179936147 + (TCTA)n Simple_repeat Simple_repeat 1 48 0 209 354 21 21 chr4 22392279 22392375 -179935972 - MIR SINE MIR -154 108 13 226 194 32 0 chr4 22392525 22392587 -179935760 + CT-rich Low_complexity Low_complexity 1 64 0 841 261 101 62 chr4 22392613 22393099 -179935248 + MLT1D LTR MaLR 1 505 0 1348 212 36 39 chr4 22394347 22394710 -179933637 + MLT1A1 LTR MaLR 4 365 0 393 251 86 69 chr4 22394917 22395092 -179933255 - LTR16C LTR ERVL -4 487 310 23 0 0 0 chr4 22395717 22395740 -179932607 + AT_rich Low_complexity Low_complexity 1 23 0 368 261 8 0 chr4 22396149 22396268 -179932079 + CT-rich Low_complexity Low_complexity 1 120 0 2039 120 20 10 chr4 22396268 22396433 -179931914 - AluSx SINE Alu -8 304 142 405 0 0 0 chr4 22396433 22396478 -179931869 + (TG)n Simple_repeat Simple_repeat 2 46 0 1778 145 0 4 chr4 22396478 22396740 -179931607 - AluY SINE Alu -27 284 24 2039 120 20 10 chr4 22396740 22396874 -179931473 - AluSx SINE Alu -169 143 1 289 323 192 28 chr4 22396921 22397379 -179930968 + L2 LINE L2 1804 2336 -978 270 324 0 0 chr4 22397507 22397578 -179930769 + MER81 DNA DNA 2 72 -42 1967 163 73 16 chr4 22398483 22398669 -179929678 - MLT1B LTR MaLR 0 390 216 1823 174 29 27 chr4 22398669 22399043 -179929304 - THE1C LTR MaLR 0 375 1 1967 163 73 16 chr4 22399043 22399225 -179929122 - MLT1B LTR MaLR -174 216 1 325 265 84 14 chr4 22399842 22399987 -179928360 + MIR SINE MIR 68 232 -30 21 0 0 0 chr4 22400710 22400731 -179927616 + AT_rich Low_complexity Low_complexity 1 21 0 2227 80 28 14 chr4 22401181 22401470 -179926877 + AluY SINE Alu 1 293 -18 424 274 9 18 chr4 22401509 22401622 -179926725 - L2 LINE L2 -1 3271 3160 1756 192 38 86 chr4 22401692 22401886 -179926461 - Charlie1b DNA MER1_type -2240 521 319 1271 209 58 66 chr4 22401886 22402263 -179926084 + MLT1A2 LTR MaLR 1 374 0 1756 192 38 86 chr4 22402263 22402615 -179925732 - Charlie1b DNA MER1_type -2442 319 1 254 315 15 39 chr4 22402635 22402765 -179925582 + MIR3 SINE MIR 66 192 -16 670 189 6 88 chr4 22403376 22403875 -179924472 - MER5A DNA MER1_type 0 189 44 2093 107 4 0 chr4 22403424 22403767 -179924580 - AluSg SINE Alu 0 344 1 234 254 85 107 chr4 22403767 22403895 -179924452 + MER5A DNA MER1_type 63 189 0 201 74 0 0 chr4 22404870 22404897 -179923450 + (A)n Simple_repeat Simple_repeat 1 27 0 294 310 46 0 chr4 22404953 22405040 -179923307 - MIR3 SINE MIR -41 167 77 525 297 55 6 chr4 22405261 22405443 -179922904 + L2 LINE L2 2887 3077 -195 433 272 16 0 chr4 22405515 22405640 -179922707 + LTR16C LTR ERVL 358 484 -7 462 286 50 0 chr4 22405807 22405926 -179922421 + L2 LINE L2 3188 3312 -1 274 268 22 87 chr4 22406772 22406910 -179921437 + L2 LINE L2 3185 3313 0 271 314 10 10 chr4 22407130 22407232 -179921115 + MIR SINE MIR 91 192 -70 2265 135 26 0 chr4 22407237 22407585 -179920762 + THE1B LTR MaLR 1 357 -7 297 273 7 101 chr4 22407637 22407776 -179920571 - MIR SINE MIR -60 148 23 449 291 108 19 chr4 22408424 22408582 -179919765 - MER5B DNA MER1_type -6 172 1 192 377 132 18 chr4 22408586 22408700 -179919647 + L2 LINE L2 2918 3044 -228 273 191 79 0 chr4 22409022 22409085 -179919262 + L1ME3A LINE L1 5594 5661 -501 319 300 0 0 chr4 22409088 22409178 -179919169 - Tigger5 DNA MER2_type -1 2322 2233 257 230 14 27 chr4 22409227 22409301 -179919046 - Tigger5 DNA MER2_type 0 2323 2251 237 209 0 0 chr4 22409279 22409322 -179919025 - Tigger5 DNA MER2_type -2277 46 4 * 1328 265 62 16 chr4 22409327 22409630 -179918717 + L1ME3A LINE L1 5660 5995 -175 1947 84 0 4 chr4 22409630 22409891 -179918456 + AluY SINE Alu 50 309 -2 1328 265 62 16 chr4 22409891 22410073 -179918274 + L1ME3A LINE L1 5995 6167 -3 26 30 0 0 chr4 22410334 22410367 -179917980 + AT_rich Low_complexity Low_complexity 1 33 0 304 260 30 0 chr4 22410717 22410817 -179917530 - MER94 DNA DNA -30 104 2 1832 123 40 53 chr4 22410980 22411282 -179917065 + AluSx SINE Alu 1 298 -14 2174 177 30 19 chr4 22412370 22412799 -179915548 + Tigger2a DNA MER2_type 1 434 0 493 325 37 0 chr4 22413999 22414187 -179914160 + MIR SINE MIR 28 222 -40 1970 124 8 0 chr4 22416125 22416392 -179911955 - AluSx SINE Alu -10 302 34 1991 203 49 14 chr4 22416824 22417312 -179911035 + MLT1D LTR MaLR 1 505 0 901 309 89 8 chr4 22417702 22418097 -179910250 + LTR16A LTR ERVL 24 450 0 677 309 19 9 chr4 22418404 22418638 -179909709 + MIR SINE MIR 17 252 -10 972 196 19 5 chr4 22419238 22419452 -179908895 - Tigger1 DNA MER2_type 0 2418 2202 817 156 0 7 chr4 22419441 22419576 -179908771 - Tigger1 DNA MER2_type -2261 157 24 * 2329 73 0 13 chr4 22420135 22420436 -179907911 + AluSg SINE Alu 13 309 -1 249 293 40 10 chr4 22421343 22421442 -179906905 + MLT2C1 LTR ERVL 44 145 -252 * 1918 218 72 29 chr4 22421384 22421908 -179906439 + MLT1E2 LTR MaLR 80 626 0 910 203 75 55 chr4 22421917 22421959 -179906388 + LTR37A LTR ERV1 19 59 -367 2253 96 0 23 chr4 22421959 22422261 -179906086 - AluSg1 SINE Alu -14 295 1 910 203 75 55 chr4 22422261 22422618 -179905729 + LTR37A LTR ERV1 59 426 0 404 250 74 7 chr4 22423170 22423318 -179905029 - MER69 DNA AcHobo 0 2526 2369 274 310 113 21 chr4 22423608 22423750 -179904597 - MER5A DNA MER1_type -34 155 1 2477 53 3 0 chr4 22424370 22424669 -179903678 + AluY SINE Alu 1 300 -11 296 216 21 31 chr4 22425163 22425260 -179903087 + (TATATG)n Simple_repeat Simple_repeat 3 98 0 594 258 143 38 chr4 22425285 22425703 -179902644 + LTR33 LTR ERVL 52 513 -8 2413 112 0 0 chr4 22425910 22426222 -179902125 + AluSq SINE Alu 1 312 -1 37 0 0 0 chr4 22426791 22426828 -179901519 + AT_rich Low_complexity Low_complexity 1 37 0 253 333 56 61 chr4 22427630 22427810 -179900537 - L2 LINE L2 -227 3045 2867 832 275 28 73 chr4 22429556 22429597 -179898750 + L2 LINE L2 1430 1471 -1843 1169 210 59 65 chr4 22429597 22429969 -179898378 - MLT1A2 LTR MaLR -3 371 2 832 275 28 73 chr4 22429969 22430224 -179898123 + L2 LINE L2 1471 1704 -1610 2234 125 0 0 chr4 22430224 22430528 -179897819 + AluSx SINE Alu 1 304 -8 832 275 28 73 chr4 22430528 22430652 -179897695 + L2 LINE L2 1704 1832 -1482 1053 264 87 53 chr4 22430778 22430899 -179897448 - L1MC4a LINE L1 -1861 5947 5832 1844 128 55 43 chr4 22430899 22431228 -179897119 + MER1B DNA MER1_type 4 336 -1 1053 264 87 53 chr4 22431228 22431694 -179896653 - L1MC4a LINE L1 -1976 5832 5340 180 77 0 0 chr4 22431694 22431720 -179896627 + (TC)n Simple_repeat Simple_repeat 2 27 0 474 120 0 0 chr4 22431721 22431796 -179896551 + (TA)n Simple_repeat Simple_repeat 1 75 0 308 342 26 8 chr4 22432335 22432452 -179895895 + L2 LINE L2 1823 1941 -1373 615 183 0 0 chr4 22432458 22432589 -179895758 + L1MA4 LINE L1 6169 6299 -1 423 228 24 114 chr4 22432968 22433135 -179895212 + MLT1J LTR MaLR 162 313 -198 402 285 55 10 chr4 22433162 22433362 -179894985 - MER58C DNA MER1_type 0 215 7 545 239 67 17 chr4 22433369 22433549 -179894798 + MLT1J LTR MaLR 321 509 -2 295 327 26 20 chr4 22434661 22434814 -179893533 + MLT1J2 LTR MaLR 253 406 -44 284 313 160 15 chr4 22434847 22434978 -179893369 - MIR SINE MIR -100 162 13 225 337 142 30 chr4 22435255 22435424 -179892923 + MIR SINE MIR 1 188 -74 293 248 38 57 chr4 22435473 22435578 -179892769 - L2 LINE L2 -1 3312 3210 590 273 6 16 chr4 22435649 22435832 -179892515 + L1ME2 LINE L1 37 217 -6179 2899 268 62 15 chr4 22435836 22437201 -179891146 + L1ME2 LINE L1 2958 4387 -1828 24 32 0 0 chr4 22437209 22437240 -179891107 + AT_rich Low_complexity Low_complexity 1 31 0 947 232 62 36 chr4 22437242 22437630 -179890717 + L1ME2 LINE L1 4590 4987 -1228 41272 28 21 1 chr4 22437644 22443675 -179884672 + L1HS LINE L1 1 6155 0 234 0 0 0 chr4 22443703 22443729 -179884618 + (A)n Simple_repeat Simple_repeat 1 26 0 2122 232 80 36 chr4 22443731 22444022 -179884325 + L1ME2 LINE L1 4978 5255 -978 1336 204 18 87 chr4 22444022 22444414 -179883933 + MLT1A1 LTR MaLR 1 365 0 2122 232 80 36 chr4 22444414 22444910 -179883437 + L1ME2 LINE L1 5255 5728 -505 2432 93 0 0 chr4 22444910 22445221 -179883126 + AluSx SINE Alu 1 311 -1 2122 232 80 36 chr4 22445221 22445622 -179882725 + L1ME2 LINE L1 5728 6232 -1 31 0 0 0 chr4 22445925 22445956 -179882391 + AT_rich Low_complexity Low_complexity 1 31 0 1576 169 30 10 chr4 22447411 22447707 -179880640 - AluJo SINE Alu -8 304 3 405 0 0 0 chr4 22447915 22447960 -179880387 + (TG)n Simple_repeat Simple_repeat 2 46 0 378 289 152 19 chr4 22449872 22450083 -179878264 + MIR SINE MIR 18 256 -6 374 332 70 54 chr4 22450230 22450278 -179878069 - MIR SINE MIR -6 256 210 2110 109 0 14 chr4 22450278 22450586 -179877761 - AluSx SINE Alu 0 304 1 374 332 70 54 chr4 22450586 22450777 -179877570 - MIR SINE MIR -52 210 12 262 299 72 31 chr4 22450779 22450876 -179877471 + L2 LINE L2 3175 3275 -38 319 289 84 7 chr4 22451061 22451203 -179877144 - LTR67 LTR ERVL -4 553 401 418 309 24 58 chr4 22451343 22451550 -179876797 - LTR67 LTR ERVL -356 201 2 249 269 87 39 chr4 22451557 22451661 -179876686 - MIR SINE MIR -119 143 35 486 283 57 28 chr4 22451794 22451971 -179876376 - MIR3 SINE MIR -6 202 21 422 313 41 7 chr4 22452537 22452684 -179875663 + MIR SINE MIR 3 154 -108 2201 104 16 23 chr4 22452872 22453180 -179875167 + AluSx SINE Alu 1 306 -6 1093 208 128 17 chr4 22453291 22453579 -179874768 + MER67D LTR ERV1 1 320 -194 317 198 42 104 chr4 22453581 22453677 -179874670 - Tigger7 DNA MER2_type 0 2487 2398 2370 170 114 0 chr4 22453679 22454144 -179874203 - Tigger7 DNA MER2_type -1966 521 4 595 224 55 16 chr4 22454151 22454334 -179874013 + MER67D LTR ERV1 325 514 0 227 233 0 0 chr4 22454497 22454540 -179873807 + MIR3 SINE MIR 118 160 -48 23 0 0 0 chr4 22454643 22454666 -179873681 + AT_rich Low_complexity Low_complexity 1 23 0 1815 149 10 19 chr4 22454767 22455075 -179873272 - AluSq SINE Alu -8 305 1 182 341 89 32 chr4 22455365 22455488 -179872859 - L2 LINE L2 -2 3311 3182 1657 154 57 11 chr4 22455799 22455925 -179872422 + AluSx SINE Alu 1 120 -192 220 0 86 0 chr4 22455925 22455960 -179872387 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 1657 154 57 11 chr4 22455960 22456112 -179872235 + AluSx SINE Alu 120 292 -20 180 0 0 0 chr4 22456113 22456133 -179872214 + (TA)n Simple_repeat Simple_repeat 1 20 0 1728 170 20 3 chr4 22457070 22457370 -179870977 - AluJb SINE Alu -6 306 2 242 290 57 0 chr4 22457632 22457756 -179870591 + L1ME LINE L1 5651 5781 -340 370 213 7 26 chr4 22458910 22459065 -179869282 + (TA)n Simple_repeat Simple_repeat 1 152 0 205 292 11 101 chr4 22459358 22459447 -179868900 - L2 LINE L2 -182 3090 3010 234 105 0 0 chr4 22459751 22459789 -179868558 + (TCCA)n Simple_repeat Simple_repeat 1 38 0 329 75 19 0 chr4 22460674 22460727 -179867620 + (TTTCC)n Simple_repeat Simple_repeat 4 57 0 1216 148 0 37 chr4 22460733 22460949 -179867398 - L1PB4 LINE L1 -13 6143 5936 2850 165 57 39 chr4 22460998 22461714 -179866633 - L1MA8 LINE L1 -4 6287 5559 568 134 10 0 chr4 22461718 22461815 -179866532 - AluSg/x SINE Alu -2 310 213 785 134 22 8 chr4 22461815 22461949 -179866398 - L1MA8 LINE L1 -743 5569 5434 596 304 51 82 chr4 22461949 22462304 -179866043 + L2 LINE L2 2852 3190 -123 998 208 47 24 chr4 22462304 22462559 -179865788 + MIR SINE MIR 2 262 0 596 304 51 82 chr4 22462559 22462677 -179865670 + L2 LINE L2 3190 3310 -3 614 233 0 6 chr4 22463603 22463779 -179864568 + CT-rich Low_complexity Low_complexity 3 177 0 213 220 0 20 chr4 22463824 22463874 -179864473 + MIR SINE MIR 116 164 -98 1649 174 34 17 chr4 22464900 22465194 -179863153 - AluJb SINE Alu -13 299 1 425 294 42 17 chr4 22466109 22466228 -179862119 + MIR SINE MIR 23 144 -118 21 0 0 0 chr4 22466718 22466739 -179861608 + AT_rich Low_complexity Low_complexity 1 21 0 363 330 40 28 chr4 22466998 22467174 -179861173 + L2 LINE L2 3122 3299 -14 453 331 50 25 chr4 22467191 22467433 -179860914 + MIR SINE MIR 14 261 -1 228 297 0 16 chr4 22468784 22468848 -179859499 - L2 LINE L2 -26 3246 3184 22 56 0 0 chr4 22470992 22471028 -179857319 + AT_rich Low_complexity Low_complexity 1 36 0 1464 146 13 86 chr4 22471043 22471170 -179857177 + AluJo SINE Alu 16 151 -161 351 0 0 0 chr4 22471170 22471209 -179857138 + (CTA)n Simple_repeat Simple_repeat 1 39 0 1464 146 13 86 chr4 22471209 22471383 -179856964 + AluJo SINE Alu 151 295 -17 2553 43 7 0 chr4 22471826 22472125 -179856222 - AluY SINE Alu -10 301 1 221 200 36 0 chr4 22472652 22472707 -179855640 + (TGAA)n Simple_repeat Simple_repeat 4 60 0 781 331 64 10 chr4 22472839 22473153 -179855194 + MLT1J1 LTR MaLR 96 426 -20 25 31 0 0 chr4 22473918 22473950 -179854397 + AT_rich Low_complexity Low_complexity 1 32 0 644 294 13 0 chr4 22474797 22474950 -179853397 + MER45A DNA AcHobo 1 155 -23 1500 225 115 27 chr4 22475058 22475579 -179852768 - L1ME3 LINE L1 -7 6155 5589 251 272 9 88 chr4 22476689 22476803 -179851544 - MIR SINE MIR -17 245 141 3203 52 13 0 chr4 22477325 22477963 -179850384 - L1PA5 LINE L1 -497 5657 5015 3335 82 3 133 chr4 22477963 22478527 -179849820 + L1PA5 LINE L1 5659 6149 -5 518 115 184 0 chr4 22478527 22478614 -179849733 + L1P5 LINE L1 5680 5782 -372 233 125 0 0 chr4 22478612 22478652 -179849695 + L1MC4 LINE L1 6664 6703 -1339 * 322 229 72 0 chr4 22478655 22478738 -179849609 + L1MC4 LINE L1 6615 6703 -1339 304 276 0 61 chr4 22478660 22478758 -179849589 - L1MC4 LINE L1 -1339 6703 6612 * 2341 113 14 8 chr4 22478759 22479129 -179849218 + L1PB3 LINE L1 5783 6154 0 25 0 0 0 chr4 22479129 22479154 -179849193 + AT_rich Low_complexity Low_complexity 1 25 0 383 247 2 6 chr4 22479256 22479360 -179848987 - MIR SINE MIR -41 167 65 2277 102 0 7 chr4 22479825 22480128 -179848219 - AluY SINE Alu -10 301 1 233 319 65 68 chr4 22480185 22480317 -179848030 - MIR SINE MIR -3 259 127 3563 150 64 0 chr4 22480317 22480929 -179847418 + L1PA16 LINE L1 5512 6162 -4 233 319 65 68 chr4 22480929 22481044 -179847303 - MIR SINE MIR -135 127 13 1046 343 47 15 chr4 22481234 22481639 -179846708 - MER115 DNA AcHobo -238 455 38 322 327 44 0 chr4 22482571 22482684 -179845663 + MIR SINE MIR 30 147 -61 242 158 0 0 chr4 22483120 22483158 -179845189 - L2 LINE L2 0 3272 3235 338 354 35 7 chr4 22483755 22483899 -179844448 - MIR SINE MIR -44 218 71 819 223 25 30 chr4 22483949 22484151 -179844196 - MIR SINE MIR -52 210 10 427 314 25 16 chr4 22484876 22484997 -179843350 + MIR3 SINE MIR 12 133 -75 605 285 15 35 chr4 22485040 22485240 -179843107 - MIR SINE MIR -64 198 3 257 278 78 0 chr4 22485678 22485793 -179842554 + L1ME4a LINE L1 5982 6105 -16 1843 174 3 0 chr4 22486161 22486472 -179841875 - AluJb SINE Alu 0 312 1 1991 129 23 54 chr4 22487047 22487434 -179840913 - THE1C LTR MaLR 0 375 1 2563 96 67 7 chr4 22487457 22487875 -179840472 - L1MA5A LINE L1 -4 6293 5851 377 39 0 19 chr4 22487928 22487980 -179840367 + (TCTA)n Simple_repeat Simple_repeat 2 52 0 256 311 15 61 chr4 22487988 22488120 -179840227 + L2 LINE L2 3180 3305 -8 22 70 0 0 chr4 22489257 22489300 -179839047 + AT_rich Low_complexity Low_complexity 1 43 0 1851 146 42 39 chr4 22489628 22489963 -179838384 + MER1B DNA MER1_type 2 337 0 562 295 112 9 chr4 22490012 22490236 -179838111 - MIR SINE MIR -14 248 2 201 227 80 45 chr4 22490608 22490696 -179837651 - MIR SINE MIR -75 187 97 1677 184 45 14 chr4 22490847 22491201 -179837146 - MLT1A1 LTR MaLR 0 365 1 704 229 32 0 chr4 22491213 22491370 -179836977 + MER106B DNA MER1_type 896 1057 -2 213 65 0 0 chr4 22491588 22491619 -179836728 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 2218 111 0 0 chr4 22491643 22491932 -179836415 - AluSx SINE Alu -23 289 1 430 203 0 0 chr4 22491956 22492035 -179836312 - AluJ/FLAM SINE Alu -233 79 1 436 327 103 14 chr4 22492285 22492499 -179835848 + MIR SINE MIR 23 255 -7 1494 156 101 0 chr4 22494142 22494421 -179833926 - AluJo SINE Alu 0 305 1 432 370 22 6 chr4 22494804 22494985 -179833362 - MIR SINE MIR -29 233 50 583 294 71 5 chr4 22495325 22495522 -179832825 - MIR SINE MIR 0 262 53 206 286 0 0 chr4 22495544 22495600 -179832747 + MIR SINE MIR 192 247 -15 2205 101 3 0 chr4 22496318 22496645 -179831702 - AluSq SINE Alu 0 328 1 226 320 10 48 chr4 22496755 22496858 -179831489 + L2 LINE L2 3174 3272 0 34 72 0 0 chr4 22497309 22497378 -179830969 + AT_rich Low_complexity Low_complexity 1 69 0 309 315 51 115 chr4 22498625 22498719 -179829628 + MLT1K LTR MaLR 197 295 -293 1350 55 0 0 chr4 22498719 22498913 -179829434 + L1PA5 LINE L1 5972 6165 0 309 315 51 115 chr4 22498913 22499227 -179829120 + MLT1K LTR MaLR 295 580 -8 253 282 50 138 chr4 22499424 22499605 -179828742 + L2 LINE L2 3077 3241 -31 2296 129 8 19 chr4 22499637 22500016 -179828331 - THE1C LTR MaLR 0 375 1 214 279 0 16 chr4 22501248 22501309 -179827038 + MIR SINE MIR 2 61 -201 2161 204 56 31 chr4 22501317 22501802 -179826545 + MLT1D LTR MaLR 7 503 -2 533 296 57 0 chr4 22501829 22501988 -179826359 + MIR SINE MIR 95 262 0 183 42 0 0 chr4 22502110 22502134 -179826213 + (TG)n Simple_repeat Simple_repeat 2 25 0 1367 217 43 45 chr4 22502480 22502854 -179825493 - MLT1A2 LTR MaLR -1 373 1 1759 188 3 0 chr4 22502909 22503217 -179825130 - AluSq SINE Alu -4 309 1 1286 201 0 0 chr4 22503268 22503507 -179824840 + Tigger5 DNA MER2_type 2085 2323 0 2562 228 74 10 chr4 22503659 22504328 -179824019 - L1MD2 LINE L1 -361 5998 5284 1573 228 0 0 chr4 22504328 22504639 -179823708 - AluY SINE Alu 0 311 1 2562 228 74 10 chr4 22504639 22504713 -179823634 - L1MD2 LINE L1 -1075 5284 5216 1829 113 0 0 chr4 22504813 22505052 -179823295 - AluSx SINE Alu -73 239 1 1478 167 0 0 chr4 22505103 22505342 -179823005 + Tigger5 DNA MER2_type 2085 2323 0 333 246 0 0 chr4 22505665 22505734 -179822613 - MER94 DNA DNA -61 73 5 244 310 60 0 chr4 22506040 22506140 -179822207 - L3 LINE CR1 -2 1575 1470 297 352 16 0 chr4 22506153 22506278 -179822069 - MIR SINE MIR -16 246 120 327 219 0 0 chr4 22506329 22506402 -179821945 + FLAM_C SINE Alu 35 107 -26 419 168 13 47 chr4 22506402 22506551 -179821796 + GA-rich Low_complexity Low_complexity 1 144 0 323 295 47 31 chr4 22507005 22507134 -179821213 + MIR3 SINE MIR 75 205 -3 216 0 0 0 chr4 22507836 22507860 -179820487 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 274 292 44 44 chr4 22507902 22508015 -179820332 - L2 LINE L2 -18 3295 3183 416 241 26 25 chr4 22508065 22508277 -179820070 - MER5C DNA MER1_type 0 324 34 2103 136 128 8 chr4 22508278 22508660 -179819687 + MSTA LTR MaLR 1 428 0 1370 209 53 76 chr4 22510111 22510508 -179817839 + MLT1C LTR MaLR 6 392 -75 4443 78 15 29 chr4 22510508 22511166 -179817181 - L1PA10 LINE L1 -3 6165 5517 1370 209 53 76 chr4 22511166 22511241 -179817106 + MLT1C LTR MaLR 392 467 0 201 290 16 16 chr4 22512721 22512783 -179815564 - L2 LINE L2 -4 3309 3248 236 336 41 16 chr4 22513099 22513221 -179815126 - L2 LINE L2 -252 3061 2937 355 298 8 8 chr4 22513330 22513451 -179814896 - L2 LINE L2 -1357 1957 1837 186 44 44 44 chr4 22513961 22514006 -179814341 + (TATAA)n Simple_repeat Simple_repeat 5 49 0 315 112 112 0 chr4 22514070 22514231 -179814116 + (TA)n Simple_repeat Simple_repeat 2 180 0 453 92 113 0 chr4 22514251 22514538 -179813809 + (TA)n Simple_repeat Simple_repeat 1 319 0 335 99 106 12 chr4 22514556 22514717 -179813630 + (TA)n Simple_repeat Simple_repeat 2 177 0 251 117 97 0 chr4 22514728 22514831 -179813516 + (TA)n Simple_repeat Simple_repeat 1 113 0 1911 139 0 0 chr4 22514847 22515113 -179813234 - AluSx SINE Alu -46 266 1 351 173 0 0 chr4 22515117 22515198 -179813149 - Charlie4 DNA MER1_type -79 1882 1802 756 200 28 17 chr4 22515291 22515471 -179812876 - Charlie4 DNA MER1_type -1779 182 1 1079 291 96 20 chr4 22515488 22515948 -179812399 + L2 LINE L2 2810 3304 -9 879 149 0 8 chr4 22516179 22516313 -179812034 + AluJb SINE Alu 2 134 -178 1928 99 44 41 chr4 22516893 22517187 -179811160 + AluSg1 SINE Alu 1 295 -14 454 301 48 15 chr4 22517341 22517547 -179810800 - L2 LINE L2 0 3313 3101 17783 28 2 1 chr4 22517657 22520551 -179807796 + L1PA4 LINE L1 3251 6152 -3 397 294 15 77 chr4 22521007 22521344 -179807003 + L1ME4a LINE L1 5598 5913 -208 2464 68 3 3 chr4 22522048 22522355 -179805992 + AluY SINE Alu 1 307 -4 338 315 18 48 chr4 22522519 22522590 -179805757 + MIR SINE MIR 87 159 -103 1908 212 85 8 chr4 22522590 22523034 -179805313 + MLT2B1 LTR ERVL 3 488 -32 387 41 0 0 chr4 22523034 22523083 -179805264 + (TG)n Simple_repeat Simple_repeat 2 50 0 1908 212 85 8 chr4 22523083 22523119 -179805228 + MLT2B1 LTR ERVL 488 520 0 338 315 18 48 chr4 22523119 22523212 -179805135 + MIR SINE MIR 159 246 -16 180 351 26 0 chr4 22523680 22523757 -179804590 - L3 LINE CR1 -2 1575 1497 530 156 37 44 chr4 22524289 22524424 -179803923 - L1MA5 LINE L1 -1 6299 6166 25 51 0 0 chr4 22525050 22525089 -179803258 + AT_rich Low_complexity Low_complexity 1 39 0 289 363 76 6 chr4 22525213 22525384 -179802963 + MIR SINE MIR 21 203 -59 189 244 110 37 chr4 22526807 22526889 -179801458 - MIR3 SINE MIR -21 187 100 324 292 124 9 chr4 22527287 22527400 -179800947 - MIR3 SINE MIR -15 193 68 616 153 0 12 chr4 22527708 22527871 -179800476 + (TA)n Simple_repeat Simple_repeat 2 162 0 225 0 0 0 chr4 22527901 22527926 -179800421 + (TA)n Simple_repeat Simple_repeat 1 25 0 189 0 0 0 chr4 22527966 22527987 -179800360 + (TA)n Simple_repeat Simple_repeat 1 21 0 303 305 0 11 chr4 22528011 22528106 -179800241 - L1MC4 LINE L1 -1335 6707 6614 300 230 0 14 chr4 22528077 22528151 -179800196 - L1MCa LINE L1 -4358 2068 1996 * 425 263 101 43 chr4 22528883 22529092 -179799255 - MIR SINE MIR -21 241 21 204 97 0 0 chr4 22529379 22529410 -179798937 + (CATA)n Simple_repeat Simple_repeat 2 32 0 234 314 29 0 chr4 22529699 22529769 -179798578 + MIR SINE MIR 172 243 -19 261 180 34 0 chr4 22531033 22531122 -179797225 + (TA)n Simple_repeat Simple_repeat 2 93 0 329 335 13 13 chr4 22531168 22531320 -179797027 + L1MC/D LINE L1 5665 5816 -1992 3182 32 3 0 chr4 22531806 22532185 -179796162 + L1PA3 LINE L1 5771 6150 -5 2310 82 0 13 chr4 22532290 22532595 -179795752 - AluSc SINE Alu -8 301 1 362 269 8 34 chr4 22533066 22533185 -179795162 + MIR SINE MIR 102 217 -45 187 297 0 0 chr4 22533808 22533845 -179794502 + MER5B DNA MER1_type 5 41 -137 1674 214 36 17 chr4 22533915 22534329 -179794018 + L1MB5 LINE L1 5688 6109 -65 369 259 14 72 chr4 22534547 22534686 -179793661 + MER5A DNA MER1_type 37 167 -22 249 310 128 37 chr4 22534780 22534967 -179793380 - MIR SINE MIR -12 250 47 208 348 17 17 chr4 22535741 22535856 -179792491 + MIR SINE MIR 73 187 -75 264 383 113 0 chr4 22535884 22536025 -179792322 - L2 LINE L2 -6 3266 3110 730 335 80 17 chr4 22536039 22536451 -179791896 - L2 LINE L2 0 3313 2876 1312 167 20 82 chr4 22536472 22536778 -179791569 + AluJo SINE Alu 12 298 -14 610 310 59 31 chr4 22536778 22537065 -179791282 - L2 LINE L2 -481 2833 2539 430 287 28 35 chr4 22537107 22537250 -179791097 + L2 LINE L2 3172 3313 0 475 320 114 0 chr4 22537279 22537454 -179790893 - L2 LINE L2 -856 2458 2264 647 264 10 70 chr4 22537517 22537632 -179790715 + MER5A DNA MER1_type 1 100 -89 2247 118 0 6 chr4 22537632 22537945 -179790402 + AluSx SINE Alu 2 312 0 647 264 10 70 chr4 22537945 22538030 -179790317 + MER5A DNA MER1_type 100 189 0 226 338 42 0 chr4 22538434 22538505 -179789842 + L2 LINE L2 3240 3313 0 523 310 91 13 chr4 22539098 22539330 -179789017 - MIR SINE MIR 0 262 13 262 397 63 0 chr4 22539758 22539884 -179788463 - L2 LINE L2 -17 3255 3122 324 0 0 0 chr4 22540051 22540087 -179788260 + (TG)n Simple_repeat Simple_repeat 1 36 0 454 331 0 7 chr4 22540798 22540952 -179787395 - MER117 DNA MER1_type -42 155 3 267 375 29 0 chr4 22540961 22541065 -179787282 - MIR3 SINE MIR -54 154 48 782 386 41 16 chr4 22541763 22542413 -179785934 + L2 LINE L2 2394 3051 -221 692 322 47 41 chr4 22542423 22542889 -179785458 + LTR16C LTR ERVL 3 471 -20 480 291 44 34 chr4 22542944 22543150 -179785197 + L2 LINE L2 3106 3313 0 582 297 53 23 chr4 22543356 22543589 -179784758 - MIR SINE MIR -18 244 5 1272 184 73 35 chr4 22543832 22544120 -179784227 - AluJo SINE Alu -13 299 1 216 0 0 0 chr4 22544134 22544158 -179784189 + (TG)n Simple_repeat Simple_repeat 2 25 0 194 313 50 38 chr4 22544189 22544269 -179784078 - MIR SINE MIR -173 89 9 518 207 96 106 chr4 22544638 22544846 -179783501 + MIR SINE MIR 43 248 -14 1914 148 0 3 chr4 22544981 22545303 -179783044 + AluSx SINE Alu 1 321 0 207 344 75 47 chr4 22545430 22545642 -179782705 - L2 LINE L2 -429 2885 2668 503 275 109 44 chr4 22546114 22546343 -179782004 - MIR SINE MIR -13 249 6 192 284 49 74 chr4 22546644 22546725 -179781622 + MIR SINE MIR 5 83 -179 224 379 29 44 chr4 22546744 22546950 -179781397 - L2 LINE L2 -252 3020 2818 344 269 84 8 chr4 22547112 22547231 -179781116 + MIR SINE MIR 87 214 -48 5872 29 0 0 chr4 22547537 22548232 -179780115 - L1P LINE L1 -2017 4129 3435 282 392 15 38 chr4 22548962 22549225 -179779122 - L2 LINE L2 -198 3074 2818 1783 158 37 10 chr4 22549560 22549857 -179778490 - AluJb SINE Alu -4 308 4 1943 154 3 0 chr4 22550872 22551170 -179777177 + AluSx SINE Alu 3 301 -11 748 276 86 0 chr4 22552256 22552488 -179775859 + MIR SINE MIR 11 262 0 541 277 14 7 chr4 22552521 22552662 -179775685 - MIR SINE MIR 0 262 121 188 305 34 51 chr4 22553524 22553642 -179774705 + L2 LINE L2 2350 2465 -849 253 336 90 52 chr4 22554043 22554177 -179774170 + L2 LINE L2 3134 3272 0 326 314 50 14 chr4 22555306 22555446 -179772901 - MIR3 SINE MIR -40 168 24 229 291 126 39 chr4 22555727 22555854 -179772493 - MIR SINE MIR -77 185 48 1398 133 31 9 chr4 22556017 22556242 -179772105 + MER30 DNA MER1_type 1 230 0 816 121 0 0 chr4 22556400 22556516 -179771831 + MLT1C LTR MaLR 346 461 -6 872 127 0 22 chr4 22556534 22556668 -179771679 - AluSq/x SINE Alu -179 133 3 439 261 50 50 chr4 22556795 22556975 -179771372 + MLT1J LTR MaLR 1 180 -331 1135 260 130 84 chr4 22557318 22558366 -179769981 + HAL1 LINE L1 679 1823 -684 2371 114 35 0 chr4 22558366 22558733 -179769614 - L1PA13 LINE L1 -2 6161 5782 1135 260 130 84 chr4 22558733 22559243 -179769104 + HAL1 LINE L1 1823 2308 -199 419 113 38 38 chr4 22559281 22559361 -179768986 + MADE1 DNA Mariner 1 80 0 316 197 0 53 chr4 22559626 22559702 -179768645 - L1MC4 LINE L1 -1317 6725 6654 35 0 0 0 chr4 22559743 22559778 -179768569 + AT_rich Low_complexity Low_complexity 1 35 0 251 261 148 11 chr4 22559780 22559868 -179768479 - L2 LINE L2 0 3313 3214 254 206 88 69 chr4 22559910 22560012 -179768335 + MIR SINE MIR 89 192 -70 342 309 148 9 chr4 22560599 22560809 -179767538 + L2 LINE L2 2561 2799 -515 2204 127 0 3 chr4 22561245 22561553 -179766794 - AluSx SINE Alu -5 307 1 453 235 196 36 chr4 22562309 22562615 -179765732 + MER113 DNA MER1_type? 3 357 -164 354 23 0 0 chr4 22562618 22562661 -179765686 + (TG)n Simple_repeat Simple_repeat 2 44 0 1309 244 71 25 chr4 22563072 22563511 -179764836 + L1MB7 LINE L1 5715 6173 -11 1249 45 0 0 chr4 22563815 22563990 -179764357 + L1PA4 LINE L1 5992 6166 0 2557 62 0 0 chr4 22564097 22564401 -179763946 + AluY SINE Alu 1 304 -7 483 291 128 45 chr4 22564626 22564900 -179763447 - LTR16A1 LTR ERVL 0 457 134 348 24 0 0 chr4 22564900 22564941 -179763406 + (TG)n Simple_repeat Simple_repeat 2 42 0 483 291 128 45 chr4 22564941 22565088 -179763259 - LTR16A1 LTR ERVL -323 134 1 211 354 13 13 chr4 22565095 22565174 -179763173 - MIR SINE MIR -166 96 18 26 0 0 0 chr4 22565261 22565287 -179763060 + AT_rich Low_complexity Low_complexity 1 26 0 1898 148 0 39 chr4 22565712 22566023 -179762324 + AluSx SINE Alu 1 299 -13 333 307 31 0 chr4 22567118 22567245 -179761102 + MER103 DNA DNA 33 163 -3 470 299 20 7 chr4 22567633 22567780 -179760567 - MIR SINE MIR -36 226 78 801 310 37 0 chr4 22568648 22568890 -179759457 - MIR SINE MIR 0 262 12 886 157 54 6 chr4 22568935 22569101 -179759246 - L1PA15 LINE L1 -198 5967 5794 1416 169 33 0 chr4 22569323 22569596 -179758751 - L1MA3 LINE L1 0 6305 6024 426 282 88 28 chr4 22571054 22571235 -179757112 - MIR SINE MIR -36 226 35 2218 69 3 21 chr4 22571733 22572116 -179756231 + AluY SINE Alu 1 378 0 519 337 78 24 chr4 22572685 22573017 -179755330 + L2 LINE L2 1203 1552 -1762 251 267 107 0 chr4 22573022 22573097 -179755250 + L2 LINE L2 3214 3296 -17 258 32 0 0 chr4 22573103 22573134 -179755213 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 365 329 28 35 chr4 22573417 22573560 -179754787 - MIR3 SINE MIR -65 143 2 419 244 10 129 chr4 22573858 22574059 -179754288 - MER69A DNA AcHobo 0 177 1 357 355 60 32 chr4 22574089 22574337 -179754010 + MIR SINE MIR 8 262 0 437 296 52 5 chr4 22574845 22574980 -179753367 + MIR3 SINE MIR 68 189 -19 645 293 107 34 chr4 22575573 22576075 -179752272 + L2 LINE L2 2738 3288 -25 288 0 0 0 chr4 22576084 22576116 -179752231 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 358 295 21 0 chr4 22576193 22576288 -179752059 + L2 LINE L2 3210 3306 -7 587 322 17 30 chr4 22576631 22576867 -179751480 - MIR SINE MIR -25 237 5 210 171 0 0 chr4 22577128 22577169 -179751178 + (TATG)n Simple_repeat Simple_repeat 2 42 0 195 100 0 0 chr4 22577191 22577221 -179751126 + (TG)n Simple_repeat Simple_repeat 2 31 0 210 71 0 0 chr4 22577261 22577289 -179751058 + (TA)n Simple_repeat Simple_repeat 2 29 0 283 260 110 0 chr4 22577728 22577801 -179750546 + MIR SINE MIR 64 144 -64 303 275 22 11 chr4 22578159 22578250 -179750097 + MIR SINE MIR 57 148 -114 493 299 38 13 chr4 22579131 22579288 -179749059 + MIR SINE MIR 35 195 -67 31 44 0 0 chr4 22579364 22579409 -179748938 + AT_rich Low_complexity Low_complexity 1 45 0 185 361 16 0 chr4 22579431 22579492 -179748855 - MIR SINE MIR -154 108 47 349 319 98 18 chr4 22581019 22581182 -179747165 - MIR3 SINE MIR -11 197 22 806 76 8 0 chr4 22584196 22584315 -179744032 + (GA)n Simple_repeat Simple_repeat 1 120 0 654 229 129 0 chr4 22585417 22585587 -179742760 + MIR SINE MIR 2 193 -69 320 324 190 0 chr4 22586217 22586396 -179741951 - MIR SINE MIR 0 262 50 862 204 0 0 chr4 22586560 22586707 -179741640 - AluJb SINE Alu -30 282 136 2190 107 3 7 chr4 22586987 22587286 -179741061 - AluSp SINE Alu -14 299 2 763 270 98 65 chr4 22587442 22587809 -179740538 + L2 LINE L2 2933 3311 -2 306 313 94 10 chr4 22588328 22588492 -179739855 + MIR SINE MIR 23 206 -56 187 348 0 14 chr4 22588594 22588663 -179739684 - MIR SINE MIR -115 147 80 273 29 0 0 chr4 22588871 22588905 -179739442 + (TG)n Simple_repeat Simple_repeat 2 35 0 452 164 77 0 chr4 22589546 22589650 -179738697 + L1MA2 LINE L1 6193 6304 0 471 314 100 9 chr4 22589712 22589922 -179738425 - MIR SINE MIR -1 261 33 1936 145 0 20 chr4 22590198 22590501 -179737846 - AluSx SINE Alu -15 297 1 2219 101 10 0 chr4 22590785 22591091 -179737256 - AluY SINE Alu 0 311 3 303 270 113 5 chr4 22591151 22591309 -179737038 + MIR SINE MIR 2 262 0 349 275 69 46 chr4 22591312 22591443 -179736904 - MIR SINE MIR -13 249 116 2222 94 0 0 chr4 22591593 22591870 -179736477 + AluSc SINE Alu 20 296 -13 422 277 38 22 chr4 22592440 22592624 -179735723 - MER5A DNA MER1_type -2 187 1 2265 220 77 58 chr4 22594022 22594658 -179733689 - MLT1E1 LTR MaLR -6 648 1 304 332 121 15 chr4 22595193 22595327 -179733020 + MIR SINE MIR 43 206 -56 2114 183 47 19 chr4 22595327 22595749 -179732598 + Tigger2a DNA MER2_type 1 434 0 304 332 121 15 chr4 22595749 22595813 -179732534 + MIR SINE MIR 206 262 0 207 400 11 0 chr4 22595827 22595917 -179732430 + L2 LINE L2 3169 3259 -13 347 377 43 56 chr4 22596203 22596508 -179731839 + L2 LINE L2 2970 3270 -2 2267 107 72 17 chr4 22597842 22598187 -179730160 + THE1B LTR MaLR 1 364 0 449 276 39 55 chr4 22599971 22600225 -179728122 - MER112 DNA MER1_type -3 253 4 268 267 17 0 chr4 22600728 22600788 -179727559 - MER96 DNA MER1_type? -24 151 91 2002 149 20 0 chr4 22600855 22601156 -179727191 + AluSx SINE Alu 1 307 -5 183 381 64 20 chr4 22601403 22601652 -179726695 + L3 LINE CR1 1065 1324 -253 273 194 11 21 chr4 22601801 22601894 -179726453 + GA-rich Low_complexity Low_complexity 4 95 0 886 178 7 7 chr4 22601911 22602350 -179725997 + GA-rich Low_complexity Low_complexity 1 439 0 258 32 0 0 chr4 22603311 22603342 -179725005 + (TA)n Simple_repeat Simple_repeat 2 32 0 5635 155 28 10 chr4 22603342 22605280 -179723067 - L1MA3 LINE L1 -41 7683 5709 14969 155 23 30 chr4 22605282 22609168 -179719179 - L1MA3 LINE L1 -2506 5059 1186 302 349 83 0 chr4 22609820 22609929 -179718418 - L2 LINE L2 -219 3053 2936 334 295 26 0 chr4 22611744 22611822 -179716525 - L2 LINE L2 -2 3270 3191 274 405 98 24 chr4 22611839 22612135 -179716212 + L2 LINE L2 2932 3249 -23 745 340 133 26 chr4 22612515 22613259 -179715088 + L2 LINE L2 2211 3032 -240 207 364 71 36 chr4 22613374 22613514 -179714833 + L2 LINE L2 3118 3262 -10 416 318 151 11 chr4 22614289 22614468 -179713879 + MIR SINE MIR 7 210 -52 1889 251 38 0 chr4 22614662 22615192 -179713155 - L1MB7 LINE L1 0 6184 5635 200 349 24 32 chr4 22615339 22615465 -179712882 + MIR3 SINE MIR 53 177 -31 318 335 45 13 chr4 22615794 22615949 -179712398 - MARNA DNA Mariner -40 546 387 451 303 42 48 chr4 22616248 22616704 -179711643 - L1ME3A LINE L1 -248 5922 5470 437 298 24 16 chr4 22616869 22616993 -179711354 + MIR3 SINE MIR 82 206 -2 269 250 0 0 chr4 22617247 22617311 -179711036 + GA-rich Low_complexity Low_complexity 6 69 0 379 312 122 34 chr4 22617399 22617726 -179710621 - MARNA DNA Mariner -221 365 10 231 357 10 31 chr4 22617911 22618009 -179710338 + MIR SINE MIR 12 107 -155 378 337 87 22 chr4 22618025 22618301 -179710046 - MLT1J LTR MaLR -8 503 210 1093 52 0 0 chr4 22618320 22618454 -179709893 + AluY SINE Alu 171 304 -7 1089 185 0 0 chr4 22618625 22618803 -179709544 + AluSg/x SINE Alu 133 310 0 28 29 0 0 chr4 22618878 22618913 -179709434 + AT_rich Low_complexity Low_complexity 1 35 0 191 188 104 0 chr4 22620206 22620254 -179708093 - MIR SINE MIR -101 161 109 975 241 101 19 chr4 22621108 22621485 -179706862 + MLT1C LTR MaLR 59 466 -1 228 279 156 34 chr4 22622547 22622726 -179705621 - MIR SINE MIR -42 220 20 242 343 139 7 chr4 22623796 22623933 -179704414 - MER5A DNA MER1_type 0 189 35 327 217 46 105 chr4 22623986 22624138 -179704209 - MIR SINE MIR -20 242 100 308 271 18 118 chr4 22624803 22625032 -179703315 - MIR SINE MIR -36 226 21 1909 195 131 37 chr4 22625125 22625643 -179702704 + MLT1F1 LTR MaLR 1 567 0 38 51 0 0 chr4 22626235 22626294 -179702053 + AT_rich Low_complexity Low_complexity 1 59 0 336 124 57 0 chr4 22626309 22626414 -179701933 + (TA)n Simple_repeat Simple_repeat 1 111 0 331 279 0 18 chr4 22627740 22627851 -179700496 - MLT1J LTR MaLR -458 109 1 269 288 13 115 chr4 22627944 22628170 -179700177 + MIR SINE MIR 21 223 -39 287 244 25 144 chr4 22629005 22629206 -179699141 + MER69A DNA AcHobo 1 177 0 383 324 28 35 chr4 22629504 22629649 -179698698 + MIR3 SINE MIR 2 145 -63 258 32 0 0 chr4 22629930 22629961 -179698386 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 220 326 11 34 chr4 22630050 22630139 -179698208 - L2 LINE L2 -1762 1552 1466 38 51 0 0 chr4 22630311 22630370 -179697977 + AT_rich Low_complexity Low_complexity 1 59 0 211 122 41 0 chr4 22630385 22630434 -179697913 + (TA)n Simple_repeat Simple_repeat 2 52 0 453 204 292 15 chr4 22630778 22630915 -179697432 - MER5A DNA MER1_type 0 189 15 26 0 0 0 chr4 22631089 22631115 -179697232 + AT_rich Low_complexity Low_complexity 1 26 0 249 315 33 22 chr4 22631125 22631217 -179697130 + MIR SINE MIR 8 100 -162 956 280 113 25 chr4 22631227 22631698 -179696649 - LTR33A LTR ERVL -11 512 1 202 277 15 0 chr4 22631767 22631832 -179696515 + MIR SINE MIR 166 231 -31 457 339 96 21 chr4 22633163 22633402 -179694945 + MIR SINE MIR 6 262 0 22 35 0 0 chr4 22634209 22634238 -179694109 + AT_rich Low_complexity Low_complexity 1 29 0 1951 151 7 57 chr4 22635286 22635341 -179693006 + MLT1B LTR MaLR 1 57 -333 2267 131 28 11 chr4 22635341 22635699 -179692648 + THE1B LTR MaLR 1 364 0 1951 151 7 57 chr4 22635699 22636048 -179692299 + MLT1B LTR MaLR 57 385 -5 35784 89 6 10 chr4 22636440 22642613 -179685734 + L1PA6 LINE L1 11 6154 0 514 159 80 0 chr4 22642815 22642927 -179685420 + MLT2B2 LTR ERVL 1 121 -394 595 131 0 10 chr4 22642927 22643026 -179685321 + MER4A LTR ERV1 1 98 -566 1619 119 191 72 chr4 22643026 22643387 -179684960 + MER4A LTR ERV1 261 664 0 647 237 65 40 chr4 22643387 22643694 -179684653 + MLT2B2 LTR ERVL 117 474 -41 183 162 0 0 chr4 22644296 22644333 -179684014 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 22 35 0 0 chr4 22644583 22644612 -179683735 + AT_rich Low_complexity Low_complexity 1 29 0 273 57 0 0 chr4 22645303 22645338 -179683009 + (CAT)n Simple_repeat Simple_repeat 2 36 0 472 329 103 13 chr4 22645442 22645676 -179682671 + MIR SINE MIR 8 262 0 339 270 75 52 chr4 22646715 22646889 -179681458 + MIR SINE MIR 12 189 -73 1710 194 90 52 chr4 22697334 22697833 -179630514 - L1MB8 LINE L1 0 6178 5661 1655 191 20 7 chr4 22697836 22698129 -179630218 - AluJb SINE Alu -14 298 2 5668 58 1 3 chr4 22698154 22698876 -179629471 - L1PA5 LINE L1 -4 6150 5430 440 319 30 24 chr4 22698978 22699147 -179629200 - MIR SINE MIR -77 185 16 208 261 0 0 chr4 22700219 22700265 -179628082 - L2 LINE L2 -4 3309 3264 2031 125 31 0 chr4 22701153 22701502 -179626845 + AluSx SINE Alu 7 312 0 281 174 14 0 chr4 22702701 22702770 -179625577 + GA-rich Low_complexity Low_complexity 2 71 0 1353 193 37 84 chr4 22702813 22703196 -179625151 + MLT1A1 LTR MaLR 1 365 0 196 313 16 16 chr4 22703995 22704059 -179624288 + MIR3 SINE MIR 12 75 -133 189 0 0 0 chr4 22704182 22704203 -179624144 + (CA)n Simple_repeat Simple_repeat 2 22 0 711 324 36 8 chr4 22704364 22704614 -179623733 - MIR SINE MIR -3 259 3 414 196 0 0 chr4 22704859 22704956 -179623391 + (TCCA)n Simple_repeat Simple_repeat 2 98 0 442 339 109 9 chr4 22704967 22705197 -179623150 + MIR SINE MIR 8 260 -2 797 209 6 29 chr4 22705375 22705547 -179622800 + AluJb SINE Alu 121 288 -24 408 325 88 31 chr4 22705568 22705762 -179622585 - MIR SINE MIR -13 249 45 2354 71 0 19 chr4 22705763 22706071 -179622276 - AluY SINE Alu -9 302 1 851 238 20 139 chr4 22706248 22706736 -179621611 - L2 LINE L2 0 3313 2884 459 0 0 0 chr4 22706745 22706796 -179621551 + (TA)n Simple_repeat Simple_repeat 1 51 0 288 0 0 0 chr4 22706795 22706827 -179621520 + (CA)n Simple_repeat Simple_repeat 2 33 0 * 180 0 0 0 chr4 22706827 22706847 -179621500 + (TG)n Simple_repeat Simple_repeat 2 21 0 299 304 22 0 chr4 22706860 22706952 -179621395 - L2 LINE L2 -1670 1644 1551 222 317 83 41 chr4 22707038 22707183 -179621164 - L2 LINE L2 -469 2845 2695 460 326 102 14 chr4 22707384 22707599 -179620748 + MIR SINE MIR 29 262 0 480 93 0 0 chr4 22708296 22708371 -179619976 + (TAGA)n Simple_repeat Simple_repeat 4 78 0 203 182 0 0 chr4 22708374 22708407 -179619940 + (TATATG)n Simple_repeat Simple_repeat 3 35 0 572 174 0 20 chr4 22709068 22709166 -179619181 + AluJo SINE Alu 87 182 -130 872 310 182 23 chr4 22710603 22711261 -179617086 + L2 LINE L2 1413 2175 -1139 818 312 112 36 chr4 22711262 22711603 -179616744 + L2 LINE L2 2508 2822 -491 1435 193 2 98 chr4 22711603 22712002 -179616345 - MLT1A1 LTR MaLR -3 362 2 818 312 112 36 chr4 22712002 22712392 -179615955 + L2 LINE L2 2822 3309 -4 2365 146 29 43 chr4 22712870 22713362 -179614985 + MER31A LTR ERV1 1 485 0 187 374 12 0 chr4 22713577 22713660 -179614687 + MIR SINE MIR 178 261 -1 2307 106 3 0 chr4 22713797 22714108 -179614239 - AluSp SINE Alu -1 312 1 2472 229 72 15 chr4 22714379 22715050 -179613297 + Charlie1 DNA MER1_type 1496 2204 -557 753 337 106 18 chr4 22715077 22715513 -179612834 + L2 LINE L2 2840 3313 0 269 357 62 0 chr4 22715546 22715658 -179612689 - MIR SINE MIR -138 124 6 318 247 144 46 chr4 22715787 22716050 -179612297 - LTR37A LTR ERV1 -78 348 60 529 192 42 0 chr4 22716915 22717035 -179611312 + Charlie5 DNA MER1_type 4 128 -2484 476 225 74 48 chr4 22717038 22717066 -179611281 + Charlie5 DNA MER1_type 2243 2269 -355 1479 158 59 49 chr4 22717066 22717370 -179610977 - AluJo SINE Alu 0 312 6 476 225 74 48 chr4 22717370 22717612 -179610735 + Charlie5 DNA MER1_type 2269 2520 -104 184 231 0 0 chr4 22717623 22717662 -179610685 - L2 LINE L2 0 3272 3234 1777 263 62 8 chr4 22718225 22718761 -179609586 + MLT1F1 LTR MaLR 1 565 -2 1459 184 0 72 chr4 22719506 22719826 -179608521 + AluJb SINE Alu 1 297 -15 1946 131 7 4 chr4 22720984 22721259 -179607088 - AluSq SINE Alu -37 276 1 2057 136 27 38 chr4 22721439 22721807 -179606540 - THE1B LTR MaLR 0 364 1 505 256 33 60 chr4 22722570 22722785 -179605562 + MIR SINE MIR 41 249 -13 2394 66 3 7 chr4 22722818 22723121 -179605226 - AluY SINE Alu -9 302 1 190 295 26 51 chr4 22723542 22723620 -179604727 + L2 LINE L2 2746 2821 -493 286 389 11 32 chr4 22723656 22723841 -179604506 + L2 LINE L2 2873 3053 -219 940 255 62 0 chr4 22726489 22726732 -179601615 + L2 LINE L2 2509 2766 -548 184 277 0 21 chr4 22727315 22727362 -179600985 - MIR SINE MIR -99 163 118 462 114 0 0 chr4 22727685 22727755 -179600592 + (GA)n Simple_repeat Simple_repeat 1 70 0 180 0 0 0 chr4 22728094 22728114 -179600233 + (CA)n Simple_repeat Simple_repeat 2 21 0 524 331 77 15 chr4 22729359 22729631 -179598716 - L2 LINE L2 -337 2977 2689 260 177 210 0 chr4 22730083 22730145 -179598202 - L2 LINE L2 -4 3309 3235 2141 128 20 51 chr4 22730156 22730548 -179597799 + MLT1B LTR MaLR 11 390 0 741 297 72 70 chr4 22730920 22731662 -179596685 + L2 LINE L2 2576 3311 -2 400 350 47 43 chr4 22732673 22732930 -179595417 + MIR SINE MIR 5 262 0 219 308 82 27 chr4 22733789 22733935 -179594412 - L2 LINE L2 0 3313 3160 375 321 19 0 chr4 22734901 22735007 -179593340 + MER81 DNA DNA 6 113 -1 229 145 65 0 chr4 22735487 22735549 -179592798 + (TA)n Simple_repeat Simple_repeat 1 66 0 5781 60 0 2 chr4 22735748 22736549 -179591798 - L1P2 LINE L1 -708 5446 4647 1873 176 6 0 chr4 22736553 22736899 -179591448 - L1M4 LINE L1 -530 5654 5307 197 388 52 0 chr4 22737560 22737676 -179590671 - L2 LINE L2 -1 3271 3150 196 308 88 22 chr4 22737681 22737772 -179590575 + L2 LINE L2 3136 3232 -40 268 324 0 0 chr4 22740120 22740188 -179588159 + MLT1K LTR MaLR 144 211 -377 28 61 0 0 chr4 22740728 22740777 -179587570 + AT_rich Low_complexity Low_complexity 1 49 0 286 250 22 11 chr4 22741277 22741369 -179586978 + MER34 LTR ERV1 450 542 0 25 31 0 0 chr4 22741385 22741417 -179586930 + AT_rich Low_complexity Low_complexity 1 32 0 210 91 0 0 chr4 22741478 22741511 -179586836 + (CAT)n Simple_repeat Simple_repeat 3 35 0 314 281 0 20 chr4 22741761 22741914 -179586433 + (TA)n Simple_repeat Simple_repeat 1 150 0 217 195 0 0 chr4 22741967 22742008 -179586339 - MIR SINE MIR -96 166 126 2205 98 20 0 chr4 22742013 22742308 -179586039 + AluSx SINE Alu 1 301 -11 1275 246 93 12 chr4 22742402 22742735 -179585612 + MLT1D LTR MaLR 144 503 -2 1061 110 0 0 chr4 22743142 22743287 -179585060 + L1PA10 LINE L1 6009 6153 -15 25 31 0 0 chr4 22743366 22743398 -179584949 + AT_rich Low_complexity Low_complexity 1 32 0 189 315 14 14 chr4 22744372 22744445 -179583902 - MIR3 SINE MIR -15 193 121 778 296 106 48 chr4 22744612 22745133 -179583214 + MLT1K LTR MaLR 10 560 -28 415 113 0 0 chr4 22745146 22745208 -179583139 - MER53 DNA DNA 0 189 128 940 116 0 0 chr4 22745209 22745338 -179583009 - AluSg/x SINE Alu -15 297 169 721 102 22 15 chr4 22746017 22746154 -179582193 + (TTCTC)n Simple_repeat Simple_repeat 1 138 0 308 207 306 0 chr4 22746308 22746419 -179581928 - MIR3 SINE MIR -14 194 50 1862 108 4 0 chr4 22746434 22746683 -179581664 + AluSq SINE Alu 7 256 -57 444 238 16 33 chr4 22747488 22747610 -179580737 + MLT1K LTR MaLR 453 572 -16 255 304 120 32 chr4 22747771 22747896 -179580451 + L2 LINE L2 3137 3272 0 644 307 139 12 chr4 22748141 22748473 -179579874 - L2 LINE L2 0 3313 2940 3265 172 24 74 chr4 22748473 22748980 -179579367 + L1MB1 LINE L1 5365 5819 -349 2100 117 15 6 chr4 22748980 22749313 -179579034 - L1MA3 LINE L1 -2 6303 5968 3265 172 24 74 chr4 22749313 22749600 -179578747 + L1MB1 LINE L1 5819 6119 -49 1743 134 0 38 chr4 22749609 22749870 -179578477 + AluSx SINE Alu 35 285 -27 278 217 121 97 chr4 22749971 22750178 -179578169 - L2 LINE L2 -374 2940 2729 228 137 0 0 chr4 22751440 22751491 -179576856 + (TG)n Simple_repeat Simple_repeat 1 51 0 183 114 0 0 chr4 22751549 22751584 -179576763 + (A)n Simple_repeat Simple_repeat 1 35 0 213 39 0 0 chr4 22752329 22752355 -179575992 + (TC)n Simple_repeat Simple_repeat 2 27 0 1087 182 0 0 chr4 22752513 22752689 -179575658 + AluSg/x SINE Alu 134 309 -3 291 114 0 0 chr4 22753520 22753564 -179574783 + (ATG)n Simple_repeat Simple_repeat 2 45 0 24 91 0 0 chr4 22753669 22753735 -179574612 + AT_rich Low_complexity Low_complexity 1 66 0 376 304 76 79 chr4 22754451 22754767 -179573580 + L2 LINE L2 2551 2865 -449 5394 147 48 5 chr4 22754845 22756017 -179572330 + L1MA9 LINE L1 5027 6249 -63 2167 92 3 16 chr4 22756362 22756665 -179571682 - AluSx SINE Alu -13 299 1 339 96 0 0 chr4 22756815 22756867 -179571480 + (TG)n Simple_repeat Simple_repeat 1 52 0 2105 127 3 3 chr4 22758079 22758426 -179569921 + AluSg SINE Alu 1 347 0 27 0 0 0 chr4 22758980 22759007 -179569340 + AT_rich Low_complexity Low_complexity 1 27 0 1662 172 0 26 chr4 22759556 22759859 -179568488 + AluJo SINE Alu 1 295 -17 1032 219 115 29 chr4 22759876 22760223 -179568124 + L1MB8 LINE L1 5796 6172 -6 404 180 22 22 chr4 22760476 22760565 -179567782 - L2 LINE L2 0 3313 3225 387 227 11 11 chr4 22761027 22761115 -179567232 - L2 LINE L2 -1 3312 3225 1454 163 20 0 chr4 22762603 22762854 -179565493 - L1MC1 LINE L1 -5 6328 6073 2039 153 34 3 chr4 22762954 22763308 -179565039 - L1MC1 LINE L1 -562 5771 5407 466 266 102 53 chr4 22764181 22764425 -179563922 - MIR SINE MIR -5 257 2 441 0 0 0 chr4 22765674 22765723 -179562624 + (TA)n Simple_repeat Simple_repeat 2 50 0 807 145 8 8 chr4 22766904 22767035 -179561312 + FLAM_C SINE Alu 1 131 -12 265 174 196 54 chr4 22767645 22767737 -179560610 - MIR SINE MIR -157 105 1 1608 140 31 71 chr4 22768082 22768420 -179559927 + MER1B DNA MER1_type 13 339 0 484 316 45 11 chr4 22768428 22768605 -179559742 + MIR SINE MIR 48 230 -32 628 261 102 31 chr4 22770153 22770379 -179557968 + MIR SINE MIR 15 256 -6 302 252 87 68 chr4 22770401 22770504 -179557843 + L2 LINE L2 3148 3252 -20 396 0 0 0 chr4 22771465 22771509 -179556838 + (TG)n Simple_repeat Simple_repeat 2 45 0 22 94 0 0 chr4 22772266 22772330 -179556017 + AT_rich Low_complexity Low_complexity 1 64 0 2496 54 0 0 chr4 22772469 22772765 -179555582 + AluY SINE Alu 5 300 -11 353 251 73 78 chr4 22773109 22773328 -179555019 + MLT1J LTR MaLR 107 324 -187 180 77 0 0 chr4 22774421 22774447 -179553900 + (CAAAA)n Simple_repeat Simple_repeat 4 29 0 27 0 0 0 chr4 22774496 22774523 -179553824 + AT_rich Low_complexity Low_complexity 1 27 0 2548 55 0 7 chr4 22774718 22775027 -179553320 - AluY SINE Alu -4 307 1 1788 285 157 18 chr4 22775996 22776952 -179551395 + L2 LINE L2 1794 3008 -305 1228 176 140 0 chr4 22776972 22777250 -179551097 + MLT2C2 LTR ERVL 1 317 -147 1162 214 26 13 chr4 22777256 22777490 -179550857 + AluJb SINE Alu 22 258 -54 17382 36 12 2 chr4 22777490 22780358 -179547989 + L1PA5 LINE L1 3270 6150 -4 789 216 25 20 chr4 22780386 22780585 -179547762 - L1ME1 LINE L1 -285 5881 5682 568 178 75 0 chr4 22780603 22780710 -179547637 + MLT2C2 LTR ERVL 302 416 -48 1070 233 47 37 chr4 22780758 22781080 -179547267 + MLT1D LTR MaLR 179 503 -2 2022 190 55 41 chr4 22781080 22781622 -179546725 - MER44D DNA MER2_type 0 605 1 3766 211 13 47 chr4 22781627 22782541 -179545806 + MLT1D-int LTR MaLR 2 884 -487 922 238 47 101 chr4 22782718 22783016 -179545331 + MLT1D-int LTR MaLR 961 1242 -129 264 227 13 13 chr4 22783017 22783092 -179545255 + MLT1E2 LTR MaLR 552 626 0 213 39 0 0 chr4 22783212 22783238 -179545109 + (TA)n Simple_repeat Simple_repeat 1 26 0 457 208 21 83 chr4 22783264 22783408 -179544939 + L2 LINE L2 3179 3313 0 182 93 0 70 chr4 22783443 22783486 -179544861 + (TCCA)n Simple_repeat Simple_repeat 1 40 0 201 245 20 0 chr4 22784138 22784187 -179544160 + GA-rich Low_complexity Low_complexity 5 54 0 216 417 27 16 chr4 22784228 22784415 -179543932 + MIR SINE MIR 32 220 -42 206 367 13 0 chr4 22785063 22785142 -179543205 + MIR SINE MIR 109 188 -74 505 291 216 0 chr4 22786006 22786205 -179542142 + MIR SINE MIR 16 257 -5 201 175 0 0 chr4 22786357 22786397 -179541950 + A-rich Low_complexity Low_complexity 1 40 0 326 237 40 0 chr4 22786947 22787023 -179541324 - MIR SINE MIR -70 192 114 472 308 154 4 chr4 22787418 22787645 -179540702 + MIR SINE MIR 2 262 0 200 360 27 0 chr4 22787753 22787828 -179540519 - MER5A DNA MER1_type -83 106 30 466 281 14 22 chr4 22787853 22787992 -179540355 + MER5A DNA MER1_type 46 183 -6 494 257 9 0 chr4 22788526 22788639 -179539708 - MER81 DNA DNA 0 114 1 209 83 28 0 chr4 22789108 22789144 -179539203 + (TAGA)n Simple_repeat Simple_repeat 2 38 0 237 226 57 0 chr4 22789161 22789214 -179539133 - MIR SINE MIR -89 173 118 250 323 0 0 chr4 22789293 22789355 -179538992 + polypyrimidine Low_complexity Low_complexity 6 67 0 378 0 0 0 chr4 22789398 22789440 -179538907 + (TA)n Simple_repeat Simple_repeat 2 43 0 212 197 14 84 chr4 22789754 22789825 -179538522 - MIR SINE MIR -133 129 64 4090 19 0 0 chr4 22791582 22792055 -179536292 - L1PA2 LINE L1 -6 6149 5677 3763 291 121 17 chr4 22792184 22792642 -179535705 + L2 LINE L2 1185 1594 -1720 186 43 0 0 chr4 22792642 22792665 -179535682 + (CAT)n Simple_repeat Simple_repeat 1 23 0 3763 291 121 17 chr4 22792665 22793813 -179534534 + L2 LINE L2 1594 2957 -357 1234 234 49 40 chr4 22793992 22794317 -179534030 - MLT1A2 LTR MaLR 0 374 47 986 253 92 3 chr4 22794468 22794607 -179533740 + MER5C DNA MER1_type 4 129 -195 1712 154 151 21 chr4 22794607 22794984 -179533363 + MSTA LTR MaLR 3 428 0 986 253 92 3 chr4 22794984 22795137 -179533210 + MER5C DNA MER1_type 129 322 -2 5946 141 20 12 chr4 22795491 22795789 -179532558 - L1MA6 LINE L1 0 6300 6006 2155 114 51 17 chr4 22795789 22796141 -179532206 - THE1B LTR MaLR 0 364 1 5946 141 20 12 chr4 22796141 22796349 -179531998 - L1MA6 LINE L1 -294 6006 5801 423 68 0 0 chr4 22796349 22796408 -179531939 + (TG)n Simple_repeat Simple_repeat 2 60 0 5946 141 20 12 chr4 22796408 22796428 -179531919 - L1MA6 LINE L1 -499 5801 5783 328 85 0 34 chr4 22796428 22796487 -179531860 + (TTTA)n Simple_repeat Simple_repeat 4 60 0 5946 141 20 12 chr4 22796487 22796976 -179531371 - L1MA6 LINE L1 -517 5783 5275 1151 144 6 2 chr4 22796973 22797179 -179531168 - L1MB8 LINE L1 -187 5991 5809 * 3685 246 36 5 chr4 22797166 22798303 -179530044 - L1M4 LINE L1 -2365 3781 2610 340 202 12 12 chr4 22798300 22798384 -179529963 + L1M4 LINE L1 2596 2679 -3467 * 30 0 0 0 chr4 22798404 22798434 -179529913 + AT_rich Low_complexity Low_complexity 1 30 0 399 332 97 20 chr4 22799147 22799343 -179529004 + MIR SINE MIR 32 242 -20 183 204 0 0 chr4 22800180 22800234 -179528113 + GA-rich Low_complexity Low_complexity 2 55 0 221 0 0 33 chr4 22800650 22800680 -179527667 + (CAAAC)n Simple_repeat Simple_repeat 1 29 0 408 20 0 0 chr4 22800680 22800729 -179527618 + (CA)n Simple_repeat Simple_repeat 2 50 0 21 0 0 0 chr4 22800925 22800946 -179527401 + AT_rich Low_complexity Low_complexity 1 21 0 25 65 0 0 chr4 22802636 22802682 -179525665 + AT_rich Low_complexity Low_complexity 1 46 0 1405 207 70 0 chr4 22802683 22802954 -179525393 - AluJb SINE Alu -22 290 1 268 282 13 13 chr4 22803902 22803980 -179524367 + GA-rich Low_complexity Low_complexity 3 80 0 185 337 105 23 chr4 22804025 22804111 -179524236 - MIR SINE MIR -74 188 96 711 247 5 32 chr4 22804553 22804743 -179523604 + MER5A DNA MER1_type 2 186 -3 222 100 0 0 chr4 22805313 22805343 -179523004 - MIR SINE MIR -114 148 119 493 311 145 23 chr4 22805755 22806099 -179522248 + MLT1J2 LTR MaLR 65 450 0 423 272 123 31 chr4 22806330 22806525 -179521822 + MIR SINE MIR 29 241 -21 793 291 160 0 chr4 22806596 22806871 -179521476 + MLT1I LTR MaLR 91 409 0 1953 166 0 0 chr4 22807322 22807623 -179520724 - AluSx SINE Alu -11 301 1 2163 103 0 20 chr4 22808324 22808625 -179519722 + AluSg SINE Alu 1 295 -15 43 0 0 0 chr4 22808629 22808672 -179519675 + AT_rich Low_complexity Low_complexity 1 43 0 191 150 125 0 chr4 22808923 22808963 -179519384 - MIR SINE MIR -64 144 100 1252 204 81 32 chr4 22809903 22810247 -179518100 + MLT1A2 LTR MaLR 1 361 -13 309 247 55 0 chr4 22810543 22810616 -179517731 - L2 LINE L2 -34 3279 3203 249 267 47 12 chr4 22810918 22811004 -179517343 - L3 LINE CR1 -865 712 624 24 0 0 0 chr4 22811704 22811728 -179516619 + AT_rich Low_complexity Low_complexity 1 24 0 225 65 0 0 chr4 22811842 22811873 -179516474 + (TTTA)n Simple_repeat Simple_repeat 4 34 0 209 328 0 30 chr4 22812485 22812552 -179515795 + MIR SINE MIR 20 84 -178 330 267 96 99 chr4 22813350 22813755 -179514592 + L1M4 LINE L1 3094 3497 -2649 368 282 28 36 chr4 22814272 22814520 -179513827 + L1M4 LINE L1 4378 4623 -1523 300 313 118 31 chr4 22814622 22814802 -179513545 + L1M4 LINE L1 4759 4959 -1187 1469 237 39 61 chr4 22814802 22815360 -179512987 - LTR55 LTR ERV -2 546 1 300 313 118 31 chr4 22815360 22815374 -179512973 + L1M4 LINE L1 4959 4970 -1176 7848 38 0 0 chr4 22815521 22816477 -179511870 - L1P LINE L1 -3599 2547 1592 2879 31 37 0 chr4 22816479 22816833 -179511514 + L1PA5 LINE L1 5775 6141 -13 23 33 0 0 chr4 22816833 22816863 -179511484 + AT_rich Low_complexity Low_complexity 1 30 0 2436 141 30 30 chr4 22816930 22817114 -179511233 + MSTA LTR MaLR 1 184 -244 2188 119 0 6 chr4 22817114 22817425 -179510922 + AluSg SINE Alu 1 309 -1 2436 141 30 30 chr4 22817425 22817666 -179510681 + MSTA LTR MaLR 183 426 -2 2220 112 0 0 chr4 22817739 22818035 -179510312 + AluSq SINE Alu 1 296 -17 352 294 112 69 chr4 22818286 22818562 -179509785 + L2 LINE L2 3022 3309 -4 247 308 54 32 chr4 22818841 22819026 -179509321 + L2 LINE L2 2695 2883 -431 231 389 23 78 chr4 22819115 22819462 -179508885 + L2 LINE L2 2918 3245 -27 3940 242 114 71 chr4 22820270 22820414 -179507933 - L1MC3 LINE L1 -20 7765 7629 1777 148 25 14 chr4 22820414 22820697 -179507650 - AluJb SINE Alu -26 286 1 3940 242 114 71 chr4 22820697 22821126 -179507221 - L1MC3 LINE L1 -156 7629 7220 228 292 0 14 chr4 22821126 22821198 -179507149 - MLT1F1 LTR MaLR -457 110 40 3940 242 114 71 chr4 22821198 22821912 -179506435 - L1MC3 LINE L1 -565 7220 6347 262 313 70 9 chr4 22822672 22822787 -179505560 + L2 LINE L2 3150 3271 -1 27 62 0 0 chr4 22823624 22823672 -179504675 + AT_rich Low_complexity Low_complexity 1 48 0 233 286 286 9 chr4 22824414 22824519 -179503828 - L2 LINE L2 -259 3054 2921 374 299 186 33 chr4 22824630 22824904 -179503443 + MLT1J2 LTR MaLR 1 316 -134 1851 154 17 3 chr4 22824904 22825196 -179503151 - AluJo SINE Alu -16 296 1 1636 178 13 30 chr4 22825749 22826047 -179502300 - AluJo SINE Alu -19 293 1 308 313 97 23 chr4 22827503 22827679 -179500668 - MIR SINE MIR -26 236 48 22 0 0 0 chr4 22827839 22827861 -179500486 + AT_rich Low_complexity Low_complexity 1 22 0 2106 118 10 14 chr4 22828017 22828313 -179500034 + AluSg SINE Alu 2 296 -14 22 0 0 0 chr4 22828396 22828418 -179499929 + AT_rich Low_complexity Low_complexity 1 22 0 751 263 99 33 chr4 22828597 22828943 -179499404 + LTR41 LTR ERVL 3 438 -335 331 298 88 23 chr4 22829378 22829549 -179498798 + MER5A DNA MER1_type 7 188 -1 * 440 295 58 13 chr4 22829405 22829561 -179498786 - MER5A DNA MER1_type -23 166 4 181 234 21 0 chr4 22829841 22829888 -179498459 + L2 LINE L2 542 589 -2725 2268 128 6 6 chr4 22830148 22830485 -179497862 + MER1B DNA MER1_type 1 337 0 347 312 36 0 chr4 22830547 22830672 -179497675 + MIR SINE MIR 32 161 -47 273 255 41 61 chr4 22830664 22830762 -179497585 + MER91C DNA MER1_type 42 137 -3 * 227 375 42 0 chr4 22830762 22830835 -179497512 + MIR SINE MIR 177 253 -9 249 318 154 23 chr4 22830833 22831053 -179497294 + L2 LINE L2 2809 3057 -215 384 247 32 6 chr4 22831174 22831332 -179497015 + MER113 DNA MER1_type? 2 163 -358 217 269 194 0 chr4 22831452 22831519 -179496828 + L2 LINE L2 3160 3239 -33 224 297 0 0 chr4 22832005 22832079 -179496268 + (TAAA)n Simple_repeat Simple_repeat 2 75 0 2294 114 0 0 chr4 22832572 22832869 -179495478 + AluSg SINE Alu 1 297 -13 28 0 0 0 chr4 22832876 22832904 -179495443 + AT_rich Low_complexity Low_complexity 1 28 0 338 303 27 73 chr4 22833840 22834030 -179494317 + MIR SINE MIR 15 208 -54 258 32 0 0 chr4 22834743 22834774 -179493573 + (TC)n Simple_repeat Simple_repeat 1 31 0 216 0 0 0 chr4 22834773 22834797 -179493550 + (CA)n Simple_repeat Simple_repeat 1 24 0 * 258 32 0 0 chr4 22835211 22835242 -179493105 + (TG)n Simple_repeat Simple_repeat 2 32 0 218 191 0 0 chr4 22835408 22835455 -179492892 + CT-rich Low_complexity Low_complexity 2 48 0 234 105 0 0 chr4 22835510 22835548 -179492799 + (CA)n Simple_repeat Simple_repeat 1 38 0 222 372 35 35 chr4 22836065 22836178 -179492169 + L2 LINE L2 2867 2979 -293 206 396 30 10 chr4 22837511 22837612 -179490735 - MER5A DNA MER1_type -30 159 57 2261 114 7 0 chr4 22837704 22838103 -179490244 + AluSx SINE Alu 1 401 0 318 337 32 42 chr4 22838951 22839141 -179489206 + L2 LINE L2 2871 3058 -214 2108 120 3 0 chr4 22839342 22839633 -179488714 + AluSx SINE Alu 2 293 -19 694 340 25 0 chr4 22839748 22839986 -179488361 + MIR SINE MIR 3 246 -16 296 181 16 150 chr4 22840220 22840314 -179488033 - Charlie5 DNA MER1_type -16 2608 2552 1807 167 14 0 chr4 22840314 22840607 -179487740 - AluJo SINE Alu -14 298 2 296 181 16 150 chr4 22840607 22840705 -179487642 - Charlie5 DNA MER1_type -72 2552 2442 231 271 0 0 chr4 22840708 22840756 -179487591 - Charlie5 DNA MER1_type -2543 69 22 1989 136 26 7 chr4 22840775 22841077 -179487270 - AluSx SINE Alu -4 308 1 333 221 39 13 chr4 22841989 22842066 -179486281 + MLT1L LTR MaLR 2 80 -535 270 297 97 30 chr4 22842294 22842459 -179485888 + MLT1L LTR MaLR 433 608 -7 23 0 0 0 chr4 22842612 22842635 -179485712 + AT_rich Low_complexity Low_complexity 1 23 0 300 336 21 36 chr4 22842755 22842895 -179485452 - MIR SINE MIR -50 212 75 391 240 55 48 chr4 22842981 22843127 -179485220 - MIR SINE MIR 0 262 116 1641 114 157 0 chr4 22843358 22843620 -179484727 + AluSq SINE Alu 1 303 0 387 256 29 76 chr4 22844086 22844258 -179484089 + MIR SINE MIR 49 212 -50 1904 117 3 86 chr4 22844258 22844582 -179483765 + AluSx SINE Alu 1 297 -15 248 250 0 31 chr4 22845492 22845556 -179482791 + GA-rich Low_complexity Low_complexity 4 65 0 870 130 0 32 chr4 22845557 22845742 -179482605 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 223 311 58 10 chr4 22846443 22846546 -179481801 + MIR SINE MIR 146 253 -9 440 168 115 44 chr4 22846791 22846904 -179481443 + MER110A LTR ERV1 86 206 -262 269 332 80 9 chr4 22847011 22847221 -179481126 + MIR SINE MIR 26 252 -10 1709 216 30 28 chr4 22848796 22848875 -179479472 + MSTD LTR MaLR 1 78 -318 2239 92 7 3 chr4 22848875 22849170 -179479177 + AluY SINE Alu 1 296 -15 1709 216 30 28 chr4 22849170 22849483 -179478864 + MSTD LTR MaLR 78 394 -2 184 364 9 0 chr4 22849483 22849583 -179478764 + L2 LINE L2 3210 3313 0 305 299 69 35 chr4 22851451 22851625 -179476722 - MIR SINE MIR -64 198 19 547 271 39 7 chr4 22852424 22852579 -179475768 - MIR SINE MIR -18 244 85 1188 195 13 17 chr4 22852580 22852810 -179475537 + MLT1A1 LTR MaLR 2 230 -135 339 59 0 0 chr4 22852810 22852862 -179475485 - MLT2A1 LTR ERVL 0 453 409 270 0 0 0 chr4 22852862 22852892 -179475455 + (CA)n Simple_repeat Simple_repeat 2 31 0 680 240 12 6 chr4 22852892 22853239 -179475108 + (TATATG)n Simple_repeat Simple_repeat 1 349 0 276 306 0 0 chr4 22853270 22853391 -179474956 + (TATATG)n Simple_repeat Simple_repeat 2 122 0 37 0 0 0 chr4 22853391 22853428 -179474919 + AT_rich Low_complexity Low_complexity 1 37 0 2864 67 13 11 chr4 22853434 22853810 -179474537 - MLT2A1 LTR ERVL -67 377 1 687 194 22 8 chr4 22853814 22853948 -179474399 + MLT1A1 LTR MaLR 239 374 0 248 279 0 33 chr4 22853948 22854009 -179474338 - MIR SINE MIR -173 89 31 275 221 43 93 chr4 22854811 22854951 -179473396 + MIR SINE MIR 127 259 -3 443 319 154 42 chr4 22854962 22855319 -179473028 + L2 LINE L2 2299 2695 -619 783 144 110 0 chr4 22855898 22856044 -179472303 - FRAM SINE Alu -15 161 1 665 289 72 36 chr4 22856155 22856404 -179471943 + MIR SINE MIR 5 262 0 1336 183 83 69 chr4 22856412 22856772 -179471575 + MLT1A1 LTR MaLR 1 365 0 255 79 0 0 chr4 22857041 22857079 -179471268 + (TTCC)n Simple_repeat Simple_repeat 3 40 0 1710 192 10 13 chr4 22857083 22857390 -179470957 - AluJo SINE Alu -4 308 3 548 358 81 43 chr4 22858021 22858393 -179469954 + L2 LINE L2 2887 3272 0 2301 127 19 11 chr4 22859638 22859999 -179468348 + THE1B LTR MaLR 1 364 0 223 178 0 0 chr4 22860065 22860110 -179468237 + (TA)n Simple_repeat Simple_repeat 2 46 0 309 307 79 0 chr4 22861022 22861149 -179467198 + MIR SINE MIR 116 252 -10 2127 115 0 0 chr4 22861910 22862376 -179465971 + AluSg SINE Alu 3 468 0 236 268 18 0 chr4 22862674 22862730 -179465617 - MER58 DNA MER1_type -166 58 2 284 248 9 73 chr4 22863507 22863616 -179464731 - MIR SINE MIR 0 262 161 22 94 0 0 chr4 22864229 22864293 -179464054 + AT_rich Low_complexity Low_complexity 1 64 0 458 211 9 0 chr4 22864794 22864903 -179463444 + CT-rich Low_complexity Low_complexity 1 110 0 2042 122 14 3 chr4 22864903 22865198 -179463149 - AluSx SINE Alu -14 298 1 23 0 0 0 chr4 22865343 22865366 -179462981 + AT_rich Low_complexity Low_complexity 1 23 0 249 211 0 0 chr4 22866495 22866552 -179461795 + (TA)n Simple_repeat Simple_repeat 2 58 0 21 0 0 0 chr4 22866768 22866789 -179461558 + AT_rich Low_complexity Low_complexity 1 21 0 553 331 59 28 chr4 22867493 22867747 -179460600 + MIR SINE MIR 1 262 0 382 321 97 25 chr4 22867858 22868095 -179460252 - MIR SINE MIR -3 259 6 382 179 21 0 chr4 22868492 22868587 -179459760 + (CATTC)n Simple_repeat Simple_repeat 4 100 0 206 347 99 8 chr4 22869337 22869458 -179458889 + MER5A DNA MER1_type 7 138 -51 235 256 23 85 chr4 22869983 22870022 -179458325 - MIR SINE MIR -56 206 166 1961 154 0 7 chr4 22870022 22870315 -179458032 + AluSx SINE Alu 5 295 -17 235 256 23 85 chr4 22870315 22870404 -179457943 - MIR SINE MIR -96 166 86 1655 222 38 71 chr4 22871075 22871255 -179457092 + MLT1C LTR MaLR 6 190 -277 2326 101 0 0 chr4 22871255 22871561 -179456786 + AluSg SINE Alu 3 308 -2 1655 222 38 71 chr4 22871561 22871858 -179456489 + MLT1C LTR MaLR 190 467 0 1933 154 59 8 chr4 22872387 22872744 -179455603 + THE1C LTR MaLR 1 375 0 23 33 0 0 chr4 22873026 22873056 -179455291 + AT_rich Low_complexity Low_complexity 1 30 0 2063 114 4 0 chr4 22873221 22873502 -179454845 + AluSg SINE Alu 1 317 0 196 114 0 0 chr4 22873502 22873537 -179454810 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 485 255 0 0 chr4 22874010 22874116 -179454231 - MER82 DNA MER2_type -547 106 1 2277 120 0 0 chr4 22874411 22874720 -179453627 + AluSx SINE Alu 1 309 -3 1011 304 113 32 chr4 22875036 22875154 -179453193 + MER69 DNA AcHobo 1 108 -1118 1676 196 3 3 chr4 22875154 22875465 -179452882 - AluJo SINE Alu -1 311 1 1011 304 113 32 chr4 22875465 22875817 -179452530 + MER69 DNA AcHobo 108 509 -717 1926 242 73 55 chr4 22875954 22877008 -179451339 + MER69 DNA AcHobo 1451 2523 -3 3234 136 76 7 chr4 22877112 22877706 -179450641 + LTR24C LTR ERV1 1 635 0 288 53 0 0 chr4 22877756 22877794 -179450553 + (TC)n Simple_repeat Simple_repeat 1 38 0 1649 216 24 11 chr4 22877834 22878205 -179450142 - MLT1E2 LTR MaLR 0 626 251 1229 110 23 0 chr4 22878210 22878383 -179449964 + MER41B LTR ERV1 365 541 -94 233 210 194 0 chr4 22878378 22878440 -179449907 - MLT1E1 LTR MaLR -380 246 173 * 2904 96 103 128 chr4 22878441 22878908 -179449439 + MER41B LTR ERV1 1 534 -101 4864 58 3 0 chr4 22878908 22879525 -179448822 - L1PA7 LINE L1 0 6154 5536 2904 96 103 128 chr4 22879525 22879620 -179448727 + MER41B LTR ERV1 534 630 -5 284 210 156 12 chr4 22879651 22879810 -179448537 - MLT1E1 LTR MaLR -431 193 11 301 215 0 161 chr4 22880676 22880825 -179447522 + MLT1H LTR MaLR 425 549 0 219 192 19 0 chr4 22880883 22880935 -179447412 + (TA)n Simple_repeat Simple_repeat 2 54 0 3029 145 6 29 chr4 22881202 22881727 -179446620 - Tigger4(Zombi) DNA MER2_type -1 2730 2218 284 261 0 0 chr4 22881732 22881797 -179446550 - Tigger4(Zombi) DNA MER2_type -2666 65 1 797 251 28 9 chr4 22882416 22882631 -179445716 - MER20 DNA MER1_type 0 219 1 347 242 205 42 chr4 22882697 22882792 -179445555 - MIR SINE MIR -4 258 180 2181 180 49 12 chr4 22882792 22883203 -179445144 + MSTB LTR MaLR 1 426 0 347 242 205 42 chr4 22883203 22883297 -179445050 - MIR SINE MIR -82 180 38 234 311 40 0 chr4 22883391 22883465 -179444882 + MIR3 SINE MIR 129 205 -3 201 108 0 0 chr4 22885561 22885598 -179442749 + (A)n Simple_repeat Simple_repeat 1 37 0 264 253 71 101 chr4 22887315 22887513 -179440834 - MLT1C LTR MaLR -270 197 6 523 288 196 14 chr4 22887555 22887933 -179440414 - L2 LINE L2 -154 3159 2719 358 325 148 39 chr4 22888134 22888439 -179439908 + L2 LINE L2 2935 3272 0 193 324 15 0 chr4 22889849 22889917 -179438430 - MIR SINE MIR -65 143 75 2175 128 3 0 chr4 22890163 22890468 -179437879 + AluSq SINE Alu 1 306 -7 339 271 50 29 chr4 22890527 22890667 -179437680 + MER103 DNA DNA 24 166 0 2170 117 0 0 chr4 22891736 22892049 -179436298 + AluSx SINE Alu 3 315 0 390 338 102 13 chr4 22892520 22892745 -179435602 + MIR SINE MIR 5 249 -13 22 0 0 0 chr4 22892750 22892772 -179435575 + AT_rich Low_complexity Low_complexity 1 22 0 207 320 39 0 chr4 22892780 22892858 -179435489 - MIR3 SINE MIR -19 189 109 233 382 10 10 chr4 22893242 22893344 -179435003 - MIR SINE MIR -62 146 45 275 331 115 22 chr4 22895417 22895556 -179432791 + MLT1K LTR MaLR 124 275 -313 2228 175 21 16 chr4 22898138 22898567 -179429780 - MSTB1 LTR MaLR 0 432 2 1380 239 32 27 chr4 22898624 22898996 -179429351 - MLT1A2 LTR MaLR 0 374 1 285 382 55 48 chr4 22899195 22899650 -179428697 - L2 LINE L2 -8 3264 2807 2164 138 122 8 chr4 22899816 22900200 -179428147 + MSTA LTR MaLR 1 428 0 209 219 14 0 chr4 22900739 22900812 -179427535 + (TA)n Simple_repeat Simple_repeat 2 75 0 1213 186 0 14 chr4 22901702 22901906 -179426441 + MLT1C LTR MaLR 24 224 -243 1883 166 78 28 chr4 22901906 22902435 -179425912 + MLT2A2 LTR ERVL 3 554 0 1178 219 4 27 chr4 22902435 22902691 -179425656 + MLT1C LTR MaLR 218 467 0 252 0 0 0 chr4 22902759 22902787 -179425560 + (A)n Simple_repeat Simple_repeat 1 28 0 252 0 0 0 chr4 22903735 22903763 -179424584 + (A)n Simple_repeat Simple_repeat 1 28 0 368 261 78 33 chr4 22904155 22904308 -179424039 - LTR33A LTR ERVL -42 481 322 206 191 24 0 chr4 22905225 22905267 -179423080 + (TTA)n Simple_repeat Simple_repeat 3 45 0 583 308 71 12 chr4 22905268 22905508 -179422839 - MIR SINE MIR -1 261 8 223 306 104 30 chr4 22906352 22906486 -179421861 - MIR SINE MIR -31 231 88 1882 148 21 3 chr4 22907131 22907422 -179420925 - AluSx SINE Alu -14 298 3 213 333 0 12 chr4 22907606 22907687 -179420660 + (TAG)n Simple_repeat Simple_repeat 1 80 0 371 262 48 24 chr4 22907700 22907826 -179420521 - MIR SINE MIR -15 247 119 325 264 71 20 chr4 22907932 22908129 -179420218 - L1M4 LINE L1 -2967 3179 2973 504 227 86 15 chr4 22908424 22908582 -179419765 + HsTC2 DNA Tc2 1228 1566 -332 286 284 43 0 chr4 22908583 22908699 -179419648 + HsTC2 DNA Tc2 1775 1895 -3 345 296 92 28 chr4 22908708 22908972 -179419375 - L1M4 LINE L1 -3181 2965 2686 259 203 27 0 chr4 22909984 22910058 -179418289 + CT-rich Low_complexity Low_complexity 3 78 0 22 56 0 0 chr4 22910302 22910338 -179418009 + AT_rich Low_complexity Low_complexity 1 36 0 443 253 76 102 chr4 22910364 22910589 -179417758 + MLT1J2 LTR MaLR 210 432 -18 2029 129 0 3 chr4 22911847 22912156 -179416191 + AluSq SINE Alu 1 308 0 192 383 9 9 chr4 22912160 22912267 -179416080 + L2 LINE L2 2892 2998 -274 2437 75 3 0 chr4 22912549 22912855 -179415492 + AluSg SINE Alu 1 307 -3 22 0 0 0 chr4 22913042 22913064 -179415283 + AT_rich Low_complexity Low_complexity 1 22 0 235 375 102 5 chr4 22914686 22914902 -179413445 - MIR SINE MIR -6 256 20 396 311 52 40 chr4 22915969 22916198 -179412149 + MIR SINE MIR 38 262 0 479 216 13 173 chr4 22916355 22916504 -179411843 - MER112 DNA MER1_type -7 253 174 765 61 0 0 chr4 22916504 22916603 -179411744 + (GAATG)n Simple_repeat Simple_repeat 2 100 0 479 216 13 173 chr4 22916603 22916754 -179411593 - MER112 DNA MER1_type -86 174 1 705 307 27 9 chr4 22917764 22917989 -179410358 + MIR SINE MIR 32 260 -2 240 235 29 15 chr4 22918465 22918533 -179409814 + L2 LINE L2 3198 3266 -6 281 325 107 12 chr4 22919094 22919263 -179409084 - MIR SINE MIR -76 186 2 396 313 95 21 chr4 22919606 22919849 -179408498 - MIR SINE MIR 0 262 2 23 33 0 0 chr4 22919932 22919962 -179408385 + AT_rich Low_complexity Low_complexity 1 30 0 291 301 98 22 chr4 22920684 22920867 -179407480 + L2 LINE L2 3112 3308 -5 188 304 107 65 chr4 22921688 22921856 -179406491 + MIR SINE MIR 32 206 -56 186 71 0 0 chr4 22922049 22922077 -179406270 + (CAA)n Simple_repeat Simple_repeat 2 29 0 227 269 0 0 chr4 22922079 22922131 -179406216 - MIR SINE MIR 0 262 211 796 310 22 50 chr4 22922286 22922650 -179405697 - L3 LINE CR1 -9 1568 1215 21 57 0 0 chr4 22922673 22922708 -179405639 + AT_rich Low_complexity Low_complexity 1 35 0 351 0 0 0 chr4 22923655 22923694 -179404653 + (TA)n Simple_repeat Simple_repeat 1 39 0 225 154 31 62 chr4 22923694 22923759 -179404588 - L1MC4 LINE L1 -1339 6703 6641 279 242 0 22 chr4 22923773 22923864 -179404483 + L1MC4 LINE L1 6615 6703 -1339 211 276 17 0 chr4 22923890 22923948 -179404399 - L2 LINE L2 -213 3059 3001 247 353 83 29 chr4 22924170 22924374 -179403973 + L2 LINE L2 3098 3312 -1 605 259 14 0 chr4 22924857 22924996 -179403351 - MER45A DNA AcHobo -34 144 4 274 281 0 0 chr4 22925016 22925080 -179403267 + GA-rich Low_complexity Low_complexity 3 66 0 336 345 89 54 chr4 22925345 22925771 -179402576 + L3 LINE CR1 977 1417 -160 216 0 0 0 chr4 22925846 22925870 -179402477 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 850 216 107 20 chr4 22925893 22926240 -179402107 + LTR37A LTR ERV1 50 426 0 279 333 29 9 chr4 22926254 22926359 -179401988 + L3 LINE CR1 1454 1560 -17 354 23 0 0 chr4 22927592 22927635 -179400712 + (TG)n Simple_repeat Simple_repeat 2 44 0 208 299 144 10 chr4 22928942 22929039 -179399308 + MIR SINE MIR 140 249 -13 466 103 0 0 chr4 22929384 22929452 -179398895 - MADE1 DNA Mariner 0 80 13 4462 69 5 2 chr4 22929472 22930049 -179398298 - L1PA8 LINE L1 -8 6164 5586 984 273 52 17 chr4 22930156 22930500 -179397847 - Charlie1b DNA MER1_type -167 356 1 216 0 0 0 chr4 22930584 22930608 -179397739 + (A)n Simple_repeat Simple_repeat 1 24 0 324 314 25 25 chr4 22930789 22930907 -179397440 - MIR3 SINE MIR -6 202 85 7258 19 0 1 chr4 22931819 22932660 -179395687 + L1PA2 LINE L1 5312 6151 -4 344 304 26 9 chr4 22933399 22933514 -179394833 + MER8 DNA MER2_type 1 117 -122 276 274 85 114 chr4 22933516 22933717 -179394630 - MIR SINE MIR -16 246 52 617 295 8 60 chr4 22933740 22933857 -179394490 - MIR SINE MIR -24 238 139 2044 136 0 13 chr4 22933857 22934165 -179394182 + AluSq SINE Alu 1 304 -9 617 295 8 60 chr4 22934165 22934298 -179394049 - MIR SINE MIR -123 139 1 21 57 0 0 chr4 22935795 22935830 -179392517 + AT_rich Low_complexity Low_complexity 1 35 0 1084 215 152 4 chr4 22936184 22936421 -179391926 - ERVL LTR ERVL -3585 2179 1908 * 2895 210 42 11 chr4 22936410 22936969 -179391378 - ERVL LTR ERVL -4010 1754 1173 267 31 0 0 chr4 22936969 22937001 -179391346 + (CCAA)n Simple_repeat Simple_repeat 4 35 0 2895 210 42 11 chr4 22937001 22937065 -179391282 - ERVL LTR ERVL -4591 1173 1112 * 8969 184 42 10 chr4 22937054 22938700 -179389647 + ERVL-D LTR ERVL 3003 4701 -1063 6127 186 32 16 chr4 22938698 22939871 -179388476 + ERVL-D LTR ERVL 4566 5757 -7 * 1786 211 37 14 chr4 22939873 22940225 -179388122 + MLT2D LTR ERVL 3 425 -39 528 59 59 0 chr4 22940225 22940327 -179388020 + (TAGA)n Simple_repeat Simple_repeat 3 110 0 1786 211 37 14 chr4 22940327 22940341 -179388006 + MLT2D LTR ERVL 425 437 -27 742 276 41 0 chr4 22941551 22941747 -179386600 - MIR SINE MIR -52 210 7 197 288 0 27 chr4 22942389 22942462 -179385885 + L2 LINE L2 3018 3088 -184 24 67 0 0 chr4 22943487 22943532 -179384815 + AT_rich Low_complexity Low_complexity 1 45 0 867 141 14 0 chr4 22944351 22944493 -179383854 - L1P3 LINE L1 -582 5572 5429 421 79 0 16 chr4 22944490 22944553 -179383794 + L1P LINE L1 5363 5424 -730 * 182 65 65 0 chr4 22945359 22945390 -179382957 + A-rich Low_complexity Low_complexity 2 34 0 2135 135 33 30 chr4 22945859 22946222 -179382125 + THE1B LTR MaLR 1 364 0 202 296 74 12 chr4 22946962 22947043 -179381304 - MIR SINE MIR -85 177 92 1004 186 62 19 chr4 22947124 22947334 -179381013 - MER58A DNA MER1_type -4 220 2 22 80 0 0 chr4 22948099 22948149 -179380198 + AT_rich Low_complexity Low_complexity 1 50 0 265 308 0 0 chr4 22948244 22948322 -179380025 - MIR SINE MIR 0 262 185 365 312 16 40 chr4 22948697 22948822 -179379525 - MER5A DNA MER1_type -67 122 1 1170 190 56 7 chr4 22949139 22949408 -179378939 - L1MA4 LINE L1 -4 6296 6015 661 306 73 7 chr4 22950219 22950749 -179377598 + L2 LINE L2 2574 3139 -174 462 363 57 60 chr4 22950845 22951195 -179377152 + L2 LINE L2 2924 3272 0 228 184 13 26 chr4 22952132 22952208 -179376139 + GA-rich Low_complexity Low_complexity 1 75 0 22 35 0 0 chr4 22952700 22952729 -179375618 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr4 22952904 22952932 -179375415 + AT_rich Low_complexity Low_complexity 1 28 0 313 307 27 67 chr4 22953075 22953225 -179375122 - MIR SINE MIR -86 176 33 2363 76 3 0 chr4 22954266 22954556 -179373791 - AluSx SINE Alu -20 292 2 1267 246 77 31 chr4 22955165 22955350 -179372997 - MLT1D LTR MaLR -3 502 327 1616 119 5 0 chr4 22955350 22955606 -179372741 - AluSg/x SINE Alu 0 321 65 1267 246 77 31 chr4 22955606 22955899 -179372448 - MLT1D LTR MaLR -178 327 1 732 267 84 18 chr4 22955899 22956124 -179372223 + MIR SINE MIR 11 250 -12 635 227 16 7 chr4 22956935 22957102 -179371245 - MLT1E2 LTR MaLR -13 611 442 260 229 48 67 chr4 22957266 22957371 -179370976 - MIR SINE MIR -10 252 150 1522 185 24 80 chr4 22957636 22958047 -179370300 - MLT1B LTR MaLR -2 388 1 2091 177 14 0 chr4 22958165 22958311 -179370036 - THE1C LTR MaLR -2 373 230 3852 56 4 2 chr4 22958311 22958796 -179369551 - L1PA7 LINE L1 0 6154 5669 2091 177 14 0 chr4 22958796 22959017 -179369330 - THE1C LTR MaLR -145 230 1 231 114 0 0 chr4 22959121 22959165 -179369182 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 628 226 0 0 chr4 22959829 22959944 -179368403 + FLAM_A SINE Alu 9 123 -19 1889 196 107 35 chr4 22960648 22961132 -179367215 + MLT1F LTR MaLR 24 542 0 1665 146 30 43 chr4 22961349 22961651 -179366696 + AluSx SINE Alu 1 298 -14 206 81 27 0 chr4 22961965 22962002 -179366345 + (TA)n Simple_repeat Simple_repeat 1 38 0 184 87 0 43 chr4 22962067 22962113 -179366234 + (TTAAA)n Simple_repeat Simple_repeat 3 46 0 220 202 20 61 chr4 22962126 22962225 -179366122 + (TA)n Simple_repeat Simple_repeat 1 95 0 240 221 0 87 chr4 22962589 22962716 -179365631 + GA-rich Low_complexity Low_complexity 1 116 0 2400 67 3 22 chr4 22962749 22963065 -179365282 + AluY SINE Alu 1 310 -1 1437 301 83 32 chr4 22963172 22963981 -179364366 + L2 LINE L2 2379 3284 -29 1401 227 70 55 chr4 22963981 22964439 -179363908 - MLT1C LTR MaLR -2 465 1 1437 301 83 32 chr4 22964439 22964471 -179363876 + L2 LINE L2 3284 3313 0 284 125 0 18 chr4 22965850 22965906 -179362441 + (TC)n Simple_repeat Simple_repeat 2 56 0 2338 83 0 3 chr4 22965939 22966251 -179362096 - AluY SINE Alu 0 311 1 262 358 40 55 chr4 22967009 22967210 -179361137 - L2 LINE L2 -5 3267 3070 240 314 29 39 chr4 22967223 22967325 -179361022 + MIR SINE MIR 83 183 -79 1694 170 39 3 chr4 22967539 22967821 -179360526 + AluJb SINE Alu 1 292 -20 1667 178 28 14 chr4 22968689 22968976 -179359371 - AluJb SINE Alu -21 291 1 21 36 0 0 chr4 22969716 22969744 -179358603 + AT_rich Low_complexity Low_complexity 1 28 0 24 96 0 0 chr4 22969952 22970025 -179358322 + AT_rich Low_complexity Low_complexity 1 73 0 198 315 36 81 chr4 22970676 22970787 -179357560 + L2 LINE L2 3205 3310 -3 400 309 63 31 chr4 22971405 22971596 -179356751 + MIR SINE MIR 2 198 -64 26 0 0 0 chr4 22972401 22972427 -179355920 + AT_rich Low_complexity Low_complexity 1 26 0 180 0 0 0 chr4 22972466 22972486 -179355861 + (ATG)n Simple_repeat Simple_repeat 2 21 0 301 287 10 10 chr4 22972522 22972623 -179355724 + MIR SINE MIR 101 201 -61 783 209 39 0 chr4 22973282 22973464 -179354883 + MER53 DNA DNA 1 189 0 1608 188 7 82 chr4 22973522 22973926 -179354421 + MLT1A2 LTR MaLR 1 374 0 188 207 103 52 chr4 22975826 22975884 -179352463 + MIR SINE MIR 2 62 -200 627 139 0 0 chr4 22977158 22977259 -179351088 - AluJb SINE Alu -1 311 211 337 296 68 12 chr4 22977931 22978093 -179350254 + L2 LINE L2 3143 3313 0 1784 116 20 58 chr4 22979055 22979349 -179348998 - AluSq SINE Alu -30 283 1 201 336 62 26 chr4 22979937 22980050 -179348297 - MIR SINE MIR -80 182 66 491 376 15 18 chr4 22980068 22980342 -179348005 + MLT1J1 LTR MaLR 1 273 -173 1630 232 58 12 chr4 22980464 22980964 -179347383 - Charlie1b DNA MER1_type 0 523 1 207 0 0 0 chr4 22981048 22981071 -179347276 + (A)n Simple_repeat Simple_repeat 1 23 0 255 322 34 34 chr4 22981253 22981371 -179346976 - MIR3 SINE MIR -6 202 85 202 273 0 18 chr4 22981849 22981904 -179346443 + L3 LINE CR1 1409 1462 -115 1899 234 153 93 chr4 22982975 22983590 -179344757 - MLT1E3 LTR MaLR -2 622 1 325 325 0 0 chr4 22984091 22984174 -179344173 + MIR SINE MIR 29 111 -151 196 175 32 0 chr4 22984197 22984260 -179344087 + (TA)n Simple_repeat Simple_repeat 2 66 0 473 313 91 14 chr4 22985547 22985755 -179342592 + MIR SINE MIR 7 230 -32 489 305 115 40 chr4 22985976 22986202 -179342145 - MIR SINE MIR 0 262 20 313 361 42 42 chr4 22986659 22986803 -179341544 + MER91A DNA MER1_type 28 171 -25 285 313 50 0 chr4 22986887 22986967 -179341380 + L2 LINE L2 3174 3257 -15 2507 68 0 3 chr4 22986980 22987288 -179341059 + AluY SINE Alu 1 307 -4 194 256 0 0 chr4 22988052 22988095 -179340252 + L2 LINE L2 3269 3311 -2 2580 182 9 6 chr4 22988327 22988793 -179339554 - MLT1C LTR MaLR 0 467 1 233 261 49 103 chr4 22989232 22989416 -179338931 + L2 LINE L2 2903 3076 -196 209 257 218 0 chr4 22989765 22989866 -179338481 + MIR SINE MIR 119 241 -21 2305 95 0 0 chr4 22990180 22990476 -179337871 - AluSc SINE Alu -13 296 1 261 0 0 0 chr4 22990717 22990746 -179337601 + (CACAT)n Simple_repeat Simple_repeat 2 30 0 1991 117 46 0 chr4 22990758 22991039 -179337308 - AluSg SINE Alu -16 294 1 189 277 138 21 chr4 22991147 22991241 -179337106 + MIR3 SINE MIR 101 205 -3 211 301 106 26 chr4 22992082 22992195 -179336152 + MIR3 SINE MIR 42 163 -45 2951 160 198 49 chr4 22993184 22993903 -179334444 + LTR1B LTR ERV1 1 826 0 231 320 31 31 chr4 22996168 22996265 -179332082 - MIR SINE MIR -119 143 47 2020 130 3 16 chr4 22996278 22996586 -179331761 - AluSx SINE Alu -7 305 2 357 358 16 0 chr4 22996902 22997025 -179331322 + MIR SINE MIR 6 130 -132 309 273 91 32 chr4 22997306 22997460 -179330887 + MIR SINE MIR 87 249 -13 2868 62 10 13 chr4 23000313 23000697 -179327650 + L1PA8A LINE L1 5736 6118 -13 455 254 149 0 chr4 23000729 23000930 -179327417 + Charlie7 DNA MER1_type 2125 2355 -257 22 0 0 0 chr4 23001125 23001147 -179327200 + AT_rich Low_complexity Low_complexity 1 22 0 347 185 62 0 chr4 23001186 23001251 -179327096 + Tigger2 DNA MER2_type 1 69 -2649 * 1031 174 42 14 chr4 23001241 23001454 -179326893 + Tigger2 DNA MER2_type 2273 2491 -227 225 132 0 0 chr4 23001454 23001492 -179326855 + (TCCC)n Simple_repeat Simple_repeat 1 38 0 1296 173 114 0 chr4 23001500 23001737 -179326610 - AluJo SINE Alu -48 264 1 1274 181 17 0 chr4 23001737 23001969 -179326378 + Tigger2 DNA MER2_type 2483 2718 0 3036 14 0 0 chr4 23002573 23002920 -179325427 + L1PA2 LINE L1 5806 6152 -3 2440 45 0 3 chr4 23003003 23003294 -179325053 - AluY SINE Alu -21 290 1 24 0 0 0 chr4 23003302 23003326 -179325021 + AT_rich Low_complexity Low_complexity 1 24 0 1493 92 0 10 chr4 23004427 23004634 -179323713 + L1PA7 LINE L1 5949 6153 -1 183 327 0 0 chr4 23004646 23004701 -179323646 + MIR SINE MIR 58 112 -150 * 250 321 62 9 chr4 23004690 23004802 -179323545 + MIR SINE MIR 59 176 -86 1321 234 123 37 chr4 23005017 23005489 -179322858 - MLT1F LTR MaLR 0 555 34 32 43 0 0 chr4 23005809 23005855 -179322492 + AT_rich Low_complexity Low_complexity 1 46 0 29 84 0 0 chr4 23007192 23007263 -179321084 + AT_rich Low_complexity Low_complexity 1 71 0 4155 105 12 2 chr4 23007324 23007926 -179320421 + L1MA1 LINE L1 5684 6291 -11 335 352 40 8 chr4 23008002 23008249 -179320098 + MER113 DNA MER1_type? 259 513 -8 2077 128 0 7 chr4 23010092 23010390 -179317957 - AluSx SINE Alu -16 296 1 792 494 83 0 chr4 23010422 23010734 -179317613 - MER58B DNA MER1_type -3 338 1 925 317 69 30 chr4 23010748 23011096 -179317251 + L2 LINE L2 2720 3097 -216 1800 186 2 63 chr4 23011096 23011511 -179316836 + MLT1B LTR MaLR 1 390 0 925 317 69 30 chr4 23011511 23011737 -179316610 + L2 LINE L2 3097 3313 0 14454 141 27 6 chr4 23011977 23013376 -179314971 - Tigger1 DNA MER2_type -3 2415 1047 1624 149 3 96 chr4 23013376 23013711 -179314636 - AluJo SINE Alu -8 304 1 14454 141 27 6 chr4 23013711 23013949 -179314398 - Tigger1 DNA MER2_type -1371 1047 816 2216 156 50 35 chr4 23013949 23014181 -179314166 - MSTA LTR MaLR 0 428 186 1866 177 0 13 chr4 23014181 23014497 -179313850 - AluSx SINE Alu 0 312 1 2216 156 50 35 chr4 23014497 23014686 -179313661 - MSTA LTR MaLR -242 186 1 14454 141 27 6 chr4 23014686 23015412 -179312935 - Tigger1 DNA MER2_type -1602 816 1 197 202 110 55 chr4 23015559 23015668 -179312679 - MIR SINE MIR 0 262 148 1135 124 54 0 chr4 23015768 23015953 -179312394 + L1PA14 LINE L1 5966 6160 -1 21 57 0 0 chr4 23016230 23016265 -179312082 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr4 23016317 23016345 -179312002 + AT_rich Low_complexity Low_complexity 1 28 0 1621 53 0 5 chr4 23016497 23016703 -179311644 - L1PA5 LINE L1 -8 6146 5942 231 67 0 0 chr4 23016703 23016733 -179311614 + L1PA5 LINE L1 5920 5949 -205 241 403 13 13 chr4 23017170 23017319 -179311028 - MIR3 SINE MIR -58 150 2 333 284 47 39 chr4 23017395 23017522 -179310825 + MIR3 SINE MIR 73 200 -8 24 100 0 0 chr4 23018237 23018317 -179310030 + AT_rich Low_complexity Low_complexity 1 80 0 4675 8 0 0 chr4 23018626 23019153 -179309194 + L1PA2 LINE L1 5629 6155 0 205 372 100 17 chr4 23019271 23019451 -179308896 - L2 LINE L2 -9 3304 3110 424 263 0 0 chr4 23019453 23019552 -179308795 - MER94 DNA DNA -15 119 21 229 279 93 0 chr4 23019585 23019671 -179308676 - L2 LINE L2 -212 3101 3008 1141 186 13 9 chr4 23020012 23020243 -179308104 + MER46A DNA MER2_type 3 234 -2 239 296 0 0 chr4 23020921 23020975 -179307372 + L2 LINE L2 3219 3272 0 222 293 50 40 chr4 23021220 23021319 -179307028 - MIR SINE MIR -115 147 48 399 151 32 0 chr4 23021904 23021997 -179306350 + (TA)n Simple_repeat Simple_repeat 2 97 0 2343 133 73 2 chr4 23022145 23022543 -179305804 + MSTB LTR MaLR 1 426 0 483 326 61 13 chr4 23023003 23023233 -179305114 + LTR33 LTR ERVL 107 347 -174 2138 124 3 3 chr4 23023512 23023818 -179304529 - AluSg SINE Alu -4 306 1 207 0 0 0 chr4 23024647 23024670 -179303677 + (T)n Simple_repeat Simple_repeat 1 23 0 276 331 32 16 chr4 23024924 23025048 -179303299 - LTR33 LTR ERVL -244 277 152 25 0 0 0 chr4 23025073 23025098 -179303249 + AT_rich Low_complexity Low_complexity 1 25 0 2178 94 0 7 chr4 23025098 23025406 -179302941 + AluSx SINE Alu 1 306 0 26 50 0 0 chr4 23026419 23026459 -179301888 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr4 23026651 23026672 -179301675 + AT_rich Low_complexity Low_complexity 1 21 0 217 132 0 0 chr4 23026734 23026772 -179301575 + (TAAAAA)n Simple_repeat Simple_repeat 3 40 0 225 0 0 0 chr4 23029136 23029161 -179299186 + (A)n Simple_repeat Simple_repeat 1 25 0 207 0 0 0 chr4 23029303 23029326 -179299021 + (TAA)n Simple_repeat Simple_repeat 2 24 0 903 346 98 13 chr4 23031081 23031904 -179296443 - L2 LINE L2 0 3313 2418 2775 159 17 26 chr4 23031930 23032713 -179295634 - L1MA7 LINE L1 -657 5634 4857 3274 167 18 23 chr4 23032713 23033376 -179294971 + L1MA7 LINE L1 5632 6291 0 2170 121 3 0 chr4 23033518 23033823 -179294524 - AluSx SINE Alu -6 306 1 1476 217 16 36 chr4 23033904 23034268 -179294079 - MLT1A2 LTR MaLR -14 360 4 4932 222 37 56 chr4 23034312 23035192 -179293155 + L1MD1 LINE L1 3385 4280 -1962 320 64 0 0 chr4 23035192 23035239 -179293108 - L1PA2 LINE L1 0 6155 6109 4932 222 37 56 chr4 23035239 23037269 -179291078 + L1MD1 LINE L1 4280 6235 -7 376 331 38 17 chr4 23037290 23037567 -179290780 - L2 LINE L2 -9 3304 2975 393 22 0 0 chr4 23039742 23039788 -179288559 + (CA)n Simple_repeat Simple_repeat 2 47 0 388 313 17 17 chr4 23040121 23040236 -179288111 + MER5A DNA MER1_type 7 121 -68 253 281 216 14 chr4 23042451 23042590 -179285757 + MIR3 SINE MIR 1 167 -41 364 283 0 9 chr4 23042667 23042780 -179285567 - L1MC/D LINE L1 -2019 5789 5678 2258 107 0 31 chr4 23043011 23043328 -179285019 + AluSc SINE Alu 1 307 -2 388 320 72 17 chr4 23043669 23043850 -179284497 - MIR SINE MIR -62 200 10 416 271 24 41 chr4 23044843 23045033 -179283314 + MIR SINE MIR 37 216 -46 1806 140 10 10 chr4 23045288 23045602 -179282745 - L1MA4A LINE L1 -9 6294 5981 399 289 28 33 chr4 23046231 23046411 -179281936 + GA-rich Low_complexity Low_complexity 2 180 0 1620 0 0 0 chr4 23046606 23046869 -179281478 + (TTTTA)n Simple_repeat Simple_repeat 1 263 0 901 96 0 0 chr4 23046869 23047067 -179281280 - AluY SINE Alu 0 355 158 1598 87 5 0 chr4 23047067 23047274 -179281073 - AluY SINE Alu -103 208 1 1876 135 7 16 chr4 23048073 23048377 -179279970 - AluSx SINE Alu -8 304 4 944 200 68 10 chr4 23048921 23049126 -179279221 - MER20 DNA MER1_type -1 218 2 350 165 0 51 chr4 23050302 23050381 -179277966 - L1PA10 LINE L1 -3 6165 6091 264 111 0 0 chr4 23050381 23050417 -179277930 + 5S rRNA rRNA 7 42 -79 1972 154 3 3 chr4 23051526 23051920 -179276427 + AluSq SINE Alu 1 394 0 4426 36 25 0 chr4 23052377 23052925 -179275422 - L1PA5 LINE L1 0 6154 5593 320 357 18 9 chr4 23053019 23053131 -179275216 + MIR SINE MIR 1 113 -149 223 343 37 46 chr4 23056078 23056186 -179272161 + MIR SINE MIR 16 122 -140 243 300 29 0 chr4 23057616 23057686 -179270661 + L2 LINE L2 3226 3297 -16 23 33 0 0 chr4 23057686 23057716 -179270631 + AT_rich Low_complexity Low_complexity 1 30 0 334 382 76 0 chr4 23058518 23058675 -179269672 + L2 LINE L2 3104 3272 0 861 241 48 66 chr4 23058945 23059364 -179268983 + MLT1A1 LTR MaLR 4 365 0 1985 160 0 0 chr4 23059392 23059680 -179268667 + AluSx SINE Alu 1 288 -24 1923 277 173 10 chr4 23059801 23060785 -179267562 + L2 LINE L2 1993 3129 -184 186 286 60 12 chr4 23060907 23060991 -179267356 + L2 LINE L2 3182 3269 -44 21 36 0 0 chr4 23061587 23061615 -179266732 + AT_rich Low_complexity Low_complexity 1 28 0 397 257 29 0 chr4 23061851 23061956 -179266391 - L1MEc LINE L1 -6223 173 66 22 56 0 0 chr4 23061998 23062034 -179266313 + AT_rich Low_complexity Low_complexity 1 36 0 305 330 48 43 chr4 23062593 23062676 -179265671 - L3 LINE CR1 -3 1574 1493 1788 177 0 7 chr4 23062676 23062976 -179265371 + AluJb SINE Alu 1 298 -14 305 330 48 43 chr4 23062976 23063101 -179265246 - L3 LINE CR1 -84 1493 1365 32 26 0 0 chr4 23063852 23063891 -179264456 + AT_rich Low_complexity Low_complexity 1 39 0 21 36 0 0 chr4 23063962 23063990 -179264357 + AT_rich Low_complexity Low_complexity 1 28 0 422 95 21 44 chr4 23065037 23065127 -179263220 + LTR41 LTR ERVL 688 795 0 361 257 40 159 chr4 23066853 23067070 -179261277 - L2 LINE L2 0 3272 3093 1595 239 7 38 chr4 23067070 23067517 -179260830 - MER63B DNA MER1_type -3 433 1 361 257 40 159 chr4 23067517 23067575 -179260772 - L2 LINE L2 -179 3093 3030 613 302 73 58 chr4 23067725 23068106 -179260241 + MLT1I LTR MaLR 11 397 -12 24 32 0 0 chr4 23068581 23068612 -179259735 + AT_rich Low_complexity Low_complexity 1 31 0 364 21 0 0 chr4 23068829 23068876 -179259471 + L1PA3 LINE L1 6109 6155 0 210 370 109 8 chr4 23068890 23069009 -179259338 - MIR3 SINE MIR -45 163 33 300 374 27 21 chr4 23069276 23069463 -179258884 - MIR3 SINE MIR -9 199 12 1984 114 7 35 chr4 23069647 23069983 -179258364 + AluY SINE Alu 1 328 0 24 85 0 0 chr4 23071146 23071205 -179257142 + AT_rich Low_complexity Low_complexity 1 59 0 221 274 0 15 chr4 23071920 23072055 -179256292 + (CATATA)n Simple_repeat Simple_repeat 2 134 0 242 191 0 16 chr4 23072172 23072235 -179256112 + CT-rich Low_complexity Low_complexity 1 62 0 270 349 54 12 chr4 23072267 23072433 -179255914 - L2 LINE L2 0 3313 3141 227 336 64 7 chr4 23072489 23072629 -179255718 + MIR SINE MIR 105 252 -10 2144 117 0 0 chr4 23073593 23073907 -179254440 + AluSg SINE Alu 1 314 0 2026 219 46 38 chr4 23074932 23075429 -179252918 - MLT1D LTR MaLR -2 503 3 343 270 0 0 chr4 23076540 23076614 -179251733 + L2 LINE L2 3199 3272 0 488 319 79 63 chr4 23077668 23077740 -179250607 + L1ME4a LINE L1 5265 5334 -787 1902 166 29 16 chr4 23077740 23078125 -179250222 - MLT1B LTR MaLR 0 390 1 488 319 79 63 chr4 23078125 23078683 -179249664 + L1ME4a LINE L1 5334 5905 -216 1218 240 113 28 chr4 23079569 23079994 -179248353 + MLT1C LTR MaLR 7 467 0 2579 183 10 4 chr4 23081761 23082254 -179246093 + Tigger7 DNA MER2_type 1 496 -237 396 247 79 75 chr4 23082988 23083454 -179244893 + L1MC5 LINE L1 7450 7917 -44 1965 133 29 40 chr4 23084027 23084404 -179243943 - THE1C LTR MaLR -2 373 1 233 260 78 13 chr4 23085825 23085902 -179242445 - L2 LINE L2 -43 3270 3189 540 271 132 39 chr4 23086022 23086302 -179242045 + L2 LINE L2 3008 3313 0 294 333 30 10 chr4 23086343 23086442 -179241905 - MIR SINE MIR -67 141 41 1875 125 44 14 chr4 23086700 23086995 -179241352 + AluSx SINE Alu 1 304 -8 220 294 83 28 chr4 23087049 23087158 -179241189 + MIR SINE MIR 98 212 -50 2224 115 0 0 chr4 23088108 23088404 -179239943 + AluSc SINE Alu 1 296 -13 1893 104 4 19 chr4 23088649 23088918 -179239429 + AluSq SINE Alu 1 265 -48 819 101 0 0 chr4 23088930 23089049 -179239298 + (GAAA)n Simple_repeat Simple_repeat 2 120 0 187 317 17 17 chr4 23089322 23089382 -179238965 + MIR SINE MIR 22 81 -181 436 319 56 30 chr4 23089605 23089837 -179238510 + MIR SINE MIR 16 253 -9 505 272 99 71 chr4 23089874 23090168 -179238179 - L2 LINE L2 -2 3311 3010 228 341 95 24 chr4 23090326 23090452 -179237895 + MIR SINE MIR 9 143 -119 448 298 107 6 chr4 23090585 23090666 -179237681 + MIR SINE MIR 65 136 -126 249 33 0 0 chr4 23090666 23090696 -179237651 + (TAA)n Simple_repeat Simple_repeat 3 32 0 448 298 107 6 chr4 23090696 23090792 -179237555 + MIR SINE MIR 136 260 -2 22 35 0 0 chr4 23092462 23092491 -179235856 + AT_rich Low_complexity Low_complexity 1 29 0 331 203 0 0 chr4 23092635 23092694 -179235653 - L2 LINE L2 -4 3309 3251 861 165 0 8 chr4 23092852 23092985 -179235362 - FRAM SINE Alu -24 152 21 22 70 0 0 chr4 23093313 23093356 -179234991 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr4 23093430 23093451 -179234896 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr4 23093684 23093712 -179234635 + AT_rich Low_complexity Low_complexity 1 28 0 961 146 152 3 chr4 23093791 23094114 -179234233 - MER33 DNA MER1_type -3 360 5 205 339 0 0 chr4 23094726 23094785 -179233562 + L2 LINE L2 3213 3271 -1 377 277 112 37 chr4 23095283 23095472 -179232875 + MIR SINE MIR 6 212 -50 815 167 15 0 chr4 23096897 23097029 -179231318 - AluJb SINE Alu -16 296 163 605 197 14 48 chr4 23097352 23097499 -179230848 - FLAM_A SINE Alu 0 142 1 192 40 0 0 chr4 23097555 23097580 -179230767 + (A)n Simple_repeat Simple_repeat 1 25 0 416 303 50 40 chr4 23097998 23098196 -179230151 - MIR SINE MIR -52 210 11 204 181 14 153 chr4 23098366 23098438 -179229909 - MIR SINE MIR -74 188 127 564 293 186 51 chr4 23098565 23099238 -179229109 - L2 LINE L2 0 3313 2566 523 329 98 31 chr4 23100653 23101070 -179227277 - L1ME LINE L1 -364 5757 5313 23639 141 16 20 chr4 23101725 23108142 -179220205 - L1PA8A LINE L1 0 6446 3 200 302 54 62 chr4 23108221 23108350 -179219997 + MIR3 SINE MIR 45 172 -36 2094 154 8 46 chr4 23108352 23108516 -179219831 + THE1C LTR MaLR 1 170 -205 1917 139 20 33 chr4 23108516 23108818 -179219529 - AluSx SINE Alu -14 298 1 2094 154 8 46 chr4 23108818 23109043 -179219304 + THE1C LTR MaLR 170 375 0 1805 140 50 30 chr4 23109964 23110264 -179218083 - AluJb SINE Alu 0 312 7 219 100 0 100 chr4 23110516 23110566 -179217781 - MIR SINE MIR 0 262 218 * 477 206 142 64 chr4 23110563 23110704 -179217643 + MIR SINE MIR 30 181 -81 216 0 0 0 chr4 23110753 23110777 -179217570 + (GA)n Simple_repeat Simple_repeat 1 24 0 938 171 93 0 chr4 23111111 23111327 -179217020 + L1MA9 LINE L1 6073 6308 -4 1596 170 3 87 chr4 23111369 23111692 -179216655 + AluJo SINE Alu 7 302 -10 693 291 106 49 chr4 23111803 23112436 -179215911 + HAL1 LINE L1 3 671 -1836 1148 229 99 43 chr4 23112449 23112802 -179215545 - MLT1C LTR MaLR 0 467 83 1674 150 81 36 chr4 23112802 23113161 -179215186 + THE1C LTR MaLR 1 375 0 1148 229 99 43 chr4 23113161 23113249 -179215098 - MLT1C LTR MaLR -384 83 1 2410 188 59 40 chr4 23113249 23114051 -179214296 + L1MEc LINE L1 1929 2650 -3890 1811 225 50 27 chr4 23114065 23114147 -179214200 + L1MD2 LINE L1 5611 5690 -669 1842 175 0 14 chr4 23114147 23114444 -179213903 + AluJb SINE Alu 1 293 -19 1811 225 50 27 chr4 23114444 23114882 -179213465 + L1MD2 LINE L1 5690 6143 -216 377 207 21 29 chr4 23114888 23115028 -179213319 + L1MC4a LINE L1 7668 7806 -2 553 288 91 18 chr4 23115141 23115537 -179212810 + HAL1 LINE L1 1842 2266 -241 1300 135 46 29 chr4 23115703 23116020 -179212327 - THE1C LTR MaLR 0 375 1 2617 196 73 30 chr4 23116892 23117048 -179211299 - L1MB8 LINE L1 0 6178 6030 2072 127 0 3 chr4 23117048 23117369 -179210978 + AluSx SINE Alu 1 320 0 2617 196 73 30 chr4 23117369 23117694 -179210653 - L1MB8 LINE L1 -148 6030 5654 2142 96 0 14 chr4 23117694 23117986 -179210361 - AluSc SINE Alu -21 288 1 2617 196 73 30 chr4 23117986 23118197 -179210150 - L1MB8 LINE L1 -524 5654 5454 2304 65 7 0 chr4 23118312 23118605 -179209742 - AluY SINE Alu -16 295 1 1545 143 102 16 chr4 23118755 23119070 -179209277 + MER46B DNA MER2_type 1 217 -19 182 363 44 22 chr4 23119112 23119203 -179209144 + L2 LINE L2 3003 3095 -177 534 275 123 8 chr4 23119219 23119422 -179208925 - MIR SINE MIR -36 226 3 22 35 0 0 chr4 23119473 23119502 -179208845 + AT_rich Low_complexity Low_complexity 1 29 0 196 372 99 8 chr4 23120254 23120375 -179207972 - L2 LINE L2 0 3272 3141 238 258 8 100 chr4 23120468 23120532 -179207815 - MIR SINE MIR -78 184 134 2252 103 7 3 chr4 23120532 23120834 -179207513 + AluSc SINE Alu 1 303 -6 238 258 8 100 chr4 23120834 23120889 -179207458 - MIR SINE MIR -128 134 76 24 0 0 0 chr4 23122266 23122290 -179206057 + AT_rich Low_complexity Low_complexity 1 24 0 216 0 0 0 chr4 23122713 23122737 -179205610 + (A)n Simple_repeat Simple_repeat 1 24 0 1129 237 23 40 chr4 23122785 23123131 -179205216 - MLT1A1 LTR MaLR 0 365 26 278 268 9 80 chr4 23123378 23123476 -179204871 + MIR SINE MIR 67 158 -104 2469 62 3 0 chr4 23123476 23123765 -179204582 + AluSx SINE Alu 16 305 -7 278 268 9 80 chr4 23123765 23123778 -179204569 + MIR SINE MIR 158 170 -92 308 311 118 0 chr4 23123878 23123997 -179204350 + L2 LINE L2 3136 3268 -4 22 35 0 0 chr4 23124094 23124123 -179204224 + AT_rich Low_complexity Low_complexity 1 29 0 328 259 61 7 chr4 23124147 23124294 -179204053 - MER113 DNA MER1_type? -362 159 5 1944 144 0 27 chr4 23124994 23125293 -179203054 - AluSx SINE Alu -21 291 1 4023 47 22 4 chr4 23125517 23126023 -179202324 + L1PA5 LINE L1 5640 6154 0 678 119 28 0 chr4 23126474 23126583 -179201764 + MLT1B LTR MaLR 279 390 0 22 0 0 0 chr4 23126929 23126951 -179201396 + AT_rich Low_complexity Low_complexity 1 22 0 2024 120 3 7 chr4 23126952 23127235 -179201112 + AluSx SINE Alu 3 284 -28 189 0 0 0 chr4 23128311 23128332 -179200015 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 1163 218 51 25 chr4 23128335 23128610 -179199737 - AluJo SINE Alu -30 282 1 22 35 0 0 chr4 23129268 23129297 -179199050 + AT_rich Low_complexity Low_complexity 1 29 0 262 145 26 11 chr4 23129434 23129561 -179198786 + AluJo SINE Alu 5 129 -173 321 26 0 0 chr4 23129561 23129599 -179198748 + (TA)n Simple_repeat Simple_repeat 2 39 0 262 145 26 11 chr4 23129599 23129705 -179198642 + AluJo SINE Alu 129 302 0 347 74 37 0 chr4 23129711 23129765 -179198582 + (GAAA)n Simple_repeat Simple_repeat 4 59 0 728 303 31 13 chr4 23130315 23130543 -179197804 - MIR SINE MIR -13 249 18 785 296 14 0 chr4 23130961 23131181 -179197166 + MER58A DNA MER1_type 1 223 -1 219 321 50 20 chr4 23132235 23132353 -179195994 - MIR SINE MIR -65 143 30 1123 113 0 0 chr4 23132769 23132947 -179195400 - AluSg/x SINE Alu 0 311 134 22 35 0 0 chr4 23133126 23133155 -179195192 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr4 23133237 23133265 -179195082 + AT_rich Low_complexity Low_complexity 1 28 0 218 250 92 0 chr4 23133454 23133530 -179194817 - MIR SINE MIR -55 207 125 276 341 49 16 chr4 23133656 23133779 -179194568 - MIR SINE MIR -65 143 17 260 365 161 13 chr4 23134343 23134820 -179193527 + L2 LINE L2 2407 2954 -360 186 292 0 56 chr4 23134966 23135038 -179193309 + L2 LINE L2 3172 3239 -74 1665 244 58 60 chr4 23135060 23135596 -179192751 - MER90 LTR ERV1 -6 608 74 479 187 19 19 chr4 23136261 23136368 -179191979 + L1MB8 LINE L1 6067 6173 -5 1771 168 50 6 chr4 23136404 23136743 -179191604 + THE1A LTR MaLR 1 354 -1 278 374 57 0 chr4 23137699 23137822 -179190525 - L2 LINE L2 -4 3268 3139 3359 149 6 11 chr4 23137951 23138480 -179189867 - MER1A DNA MER1_type -1 526 1 21 0 0 0 chr4 23139146 23139167 -179189180 + AT_rich Low_complexity Low_complexity 1 21 0 2313 159 20 34 chr4 23139381 23139821 -179188526 + Tigger2a DNA MER2_type 1 434 0 2778 172 26 26 chr4 23140178 23140685 -179187662 + MLT2B2 LTR ERVL 1 507 -8 184 409 18 0 chr4 23140960 23141070 -179187277 - L2 LINE L2 -19 3294 3183 2444 67 0 0 chr4 23141559 23141859 -179186488 + AluY SINE Alu 1 300 -11 422 356 22 0 chr4 23145102 23145282 -179183065 - MIR SINE MIR -9 253 70 2598 96 31 6 chr4 23145414 23145769 -179182578 + THE1B LTR MaLR 1 364 0 628 194 146 24 chr4 23146268 23146433 -179181914 + MIR SINE MIR 16 200 -62 183 197 213 0 chr4 23146448 23146509 -179181838 + MIR SINE MIR 134 207 -55 870 242 49 14 chr4 23147957 23148180 -179180167 + MIR SINE MIR 32 262 0 5511 89 112 38 chr4 23148313 23149399 -179178948 + MER11A LTR ERVK 1 1266 0 913 228 35 0 chr4 23149628 23149830 -179178517 - MER3 DNA MER1_type 0 209 1 206 0 69 0 chr4 23149992 23150021 -179178326 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 327 315 194 17 chr4 23150300 23150750 -179177597 + L2 LINE L2 2734 3267 -5 251 109 0 0 chr4 23151418 23151464 -179176883 + LTR66 LTR ERVL 394 439 -171 180 0 0 0 chr4 23152854 23152874 -179175473 + (TGAA)n Simple_repeat Simple_repeat 4 23 0 25 31 0 0 chr4 23152914 23152946 -179175401 + AT_rich Low_complexity Low_complexity 1 32 0 2105 114 0 3 chr4 23153839 23154129 -179174218 - AluSg SINE Alu -7 303 15 21 36 0 0 chr4 23154134 23154162 -179174185 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr4 23154427 23154448 -179173899 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr4 23154521 23154559 -179173788 + AT_rich Low_complexity Low_complexity 1 38 0 235 303 49 56 chr4 23154689 23154831 -179173516 + MER5A DNA MER1_type 48 188 -1 510 275 89 40 chr4 23154957 23155204 -179173143 + MLT1H LTR MaLR 18 276 -273 2838 193 24 60 chr4 23155213 23155927 -179172420 + LTR8 LTR ERV1 4 691 0 702 331 115 24 chr4 23156811 23157319 -179171028 - L2 LINE L2 0 3313 2761 638 313 64 57 chr4 23158784 23159631 -179168716 + L1MEd LINE L1 382 1234 -4885 334 329 86 44 chr4 23159644 23160006 -179168341 + L1MEd LINE L1 1239 1615 -4514 8103 87 5 1 chr4 23160280 23161370 -179166977 - L1P LINE L1 -4847 1299 206 22 0 0 0 chr4 23161552 23161574 -179166773 + AT_rich Low_complexity Low_complexity 1 22 0 345 327 122 5 chr4 23162605 23162810 -179165537 + L2 LINE L2 2831 3059 -213 2153 203 45 61 chr4 23162948 23163976 -179164371 - L1M4 LINE L1 -3350 3032 1999 226 182 0 0 chr4 23163980 23164013 -179164334 + MER2 DNA MER2_type 1 33 -312 363 297 52 61 chr4 23165078 23165290 -179163057 + MER63A DNA MER1_type 1 210 0 7308 119 41 4 chr4 23165417 23166481 -179161866 + THE1-int LTR MaLR 317 1420 -160 30 0 0 0 chr4 23166850 23166880 -179161467 + AT_rich Low_complexity Low_complexity 1 30 0 1195 148 0 0 chr4 23167812 23167994 -179160353 - L1M4c LINE L1 -6184 200 19 1884 199 27 62 chr4 23168503 23169021 -179159326 - MLT1D LTR MaLR -5 500 1 23 0 0 0 chr4 23169298 23169321 -179159026 + AT_rich Low_complexity Low_complexity 1 23 0 282 333 60 18 chr4 23170053 23170221 -179158126 + MARNA DNA Mariner 412 586 0 180 0 0 0 chr4 23170330 23170350 -179157997 + (TTA)n Simple_repeat Simple_repeat 3 22 0 1735 112 0 35 chr4 23170350 23170636 -179157711 - L1PA6 LINE L1 -18 6136 5861 6387 24 0 7 chr4 23170743 23172062 -179156285 + L1PA3 LINE L1 4694 6003 -152 752 214 41 81 chr4 23172218 23172488 -179155859 + MLT2B1 LTR ERVL 229 408 -6 477 317 31 32 chr4 23172685 23173247 -179155100 + L1M4 LINE L1 3796 4424 -1722 11075 44 1 1 chr4 23173427 23174825 -179153522 + L1P LINE L1 2728 4126 -2020 198 0 0 0 chr4 23175262 23175284 -179153063 + (CTAAG)n Simple_repeat Simple_repeat 4 25 0 278 192 82 27 chr4 23175801 23175874 -179152473 + LTR50 LTR ERVL 17 93 -702 342 188 0 0 chr4 23176237 23176306 -179152041 + LTR33A LTR ERVL 422 490 -33 11991 40 16 0 chr4 23176450 23177932 -179150415 + L1P LINE L1 3745 5249 -897 1619 224 57 100 chr4 23178033 23178685 -179149662 + L1MA9 LINE L1 5650 6273 -39 278 50 25 0 chr4 23180630 23180670 -179147677 + (TAA)n Simple_repeat Simple_repeat 2 42 0 521 105 12 0 chr4 23180872 23180958 -179147389 + L1MA6 LINE L1 5553 5639 -661 983 156 6 6 chr4 23181015 23181194 -179147153 + L1MA6 LINE L1 5620 5798 -502 189 107 0 0 chr4 23181201 23181229 -179147118 + (TA)n Simple_repeat Simple_repeat 2 29 0 2670 158 21 12 chr4 23181229 23181743 -179146604 + L1MA6 LINE L1 5781 6299 -1 1375 178 6 81 chr4 23182894 23183215 -179145132 + AluJb SINE Alu 1 297 -15 26 30 0 0 chr4 23183684 23183717 -179144630 + AT_rich Low_complexity Low_complexity 1 33 0 218 254 132 44 chr4 23186881 23186995 -179141352 - MIR SINE MIR -23 239 116 199 257 71 14 chr4 23187110 23187180 -179141167 - MIR SINE MIR -115 147 74 208 118 20 39 chr4 23187180 23187231 -179141116 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 592 185 25 0 chr4 23187534 23187653 -179140694 - L1PA16 LINE L1 -12 6154 6033 1110 223 46 108 chr4 23187915 23188461 -179139886 - MER77 LTR ERV1 -5 600 89 1779 179 51 14 chr4 23188708 23189059 -179139288 - MLT1A1 LTR MaLR -1 364 1 230 221 208 13 chr4 23189127 23189204 -179139143 + MIR SINE MIR 2 93 -169 207 163 47 23 chr4 23189276 23189319 -179139028 + MER5B DNA MER1_type 18 61 -117 237 243 27 0 chr4 23189335 23189409 -179138938 - LTR67 LTR ERVL -7 550 475 202 370 37 37 chr4 23192483 23192618 -179135729 - L2 LINE L2 -1322 1992 1858 3127 266 42 17 chr4 23192720 23194040 -179134307 + L1MC3 LINE L1 3155 4506 -1640 601 221 32 0 chr4 23194029 23194187 -179134160 + L1MC3 LINE L1 5768 5930 -1855 * 1614 208 73 67 chr4 23194200 23194736 -179133611 + L1MC3 LINE L1 6827 7369 -416 183 80 0 0 chr4 23194736 23194761 -179133586 + (CAAA)n Simple_repeat Simple_repeat 3 27 0 1614 208 73 67 chr4 23194761 23194864 -179133483 + L1MC3 LINE L1 7369 7470 -315 237 296 0 0 chr4 23194987 23195041 -179133306 - L2 LINE L2 -25 3288 3235 2132 209 58 62 chr4 23195796 23196412 -179131935 - MLT1E2 LTR MaLR -12 614 1 201 245 0 20 chr4 23197222 23197271 -179131076 - MIR SINE MIR -144 64 17 587 303 106 43 chr4 23198135 23198648 -179129699 - L2 LINE L2 -8 3305 2768 451 244 96 7 chr4 23200274 23200409 -179127938 + MLT1A2 LTR MaLR 1 147 -227 2716 212 148 69 chr4 23203230 23204437 -179123910 + L1MC4a LINE L1 6356 7657 -151 188 316 118 0 chr4 23205854 23205930 -179122417 + MIR3 SINE MIR 72 156 -52 360 297 102 0 chr4 23206503 23206621 -179121726 - L2 LINE L2 -38 3275 3146 26 0 0 0 chr4 23206802 23206828 -179121519 + AT_rich Low_complexity Low_complexity 1 26 0 2151 92 4 0 chr4 23206833 23207146 -179121201 + AluSq SINE Alu 1 314 0 1705 200 32 109 chr4 23207273 23207642 -179120705 - MLT1F LTR MaLR 0 542 233 243 61 0 0 chr4 23207642 23207675 -179120672 + (CA)n Simple_repeat Simple_repeat 2 34 0 1705 200 32 109 chr4 23207675 23207890 -179120457 - MLT1F LTR MaLR -309 233 3 234 242 0 0 chr4 23209146 23209208 -179119139 + L1ME2 LINE L1 5803 5864 -302 396 228 35 62 chr4 23209234 23209379 -179118968 + L1ME2 LINE L1 5967 6107 -57 249 324 63 18 chr4 23209729 23209840 -179118507 + MIR SINE MIR 23 138 -70 298 264 28 2 chr4 23210985 23211099 -179117248 - MIR SINE MIR -63 145 38 14084 81 3 5 chr4 23211644 23213623 -179114724 - L1P LINE L1 -4169 1977 2 1853 150 49 0 chr4 23213625 23213971 -179114376 + L1M4c LINE L1 1458 1820 -4564 1040 173 5 16 chr4 23214088 23214273 -179114074 + AluJb SINE Alu 100 282 -30 282 56 0 0 chr4 23214276 23214312 -179114035 + (TA)n Simple_repeat Simple_repeat 2 37 0 1188 234 144 54 chr4 23214314 23214835 -179113512 - MLT1E2 LTR MaLR -71 524 1 259 317 30 0 chr4 23215180 23215281 -179113066 - MIR SINE MIR -21 241 138 2021 110 0 4 chr4 23215659 23215931 -179112416 - AluSx SINE Alu -20 292 22 21 0 0 0 chr4 23216040 23216061 -179112286 + AT_rich Low_complexity Low_complexity 1 21 0 216 306 0 0 chr4 23216186 23216235 -179112112 + L2 LINE L2 3214 3262 -10 1939 157 7 0 chr4 23216309 23216603 -179111744 + AluSx SINE Alu 1 296 -16 359 258 119 25 chr4 23217244 23217403 -179110944 - MIR SINE MIR -66 196 23 1933 297 66 3 chr4 23218601 23219250 -179109097 + MER69 DNA AcHobo 1 690 -536 227 214 83 12 chr4 23219252 23219336 -179109011 + MER69 DNA AcHobo 1769 1858 -668 23489 84 27 12 chr4 23219438 23223039 -179105308 - L1P LINE L1 -1335 4811 1158 991 160 12 0 chr4 23223388 23223557 -179104790 + MER5A DNA MER1_type 14 184 -5 1662 132 0 11 chr4 23223578 23223851 -179104496 + L1MA5 LINE L1 6024 6293 -7 210 309 101 50 chr4 23224065 23224204 -179104143 - L2 LINE L2 -108 3164 3019 370 327 33 33 chr4 23225083 23225297 -179103050 - MIR SINE MIR -34 228 15 633 110 0 0 chr4 23227075 23227166 -179101181 - FRAM SINE Alu -13 163 73 2125 136 0 7 chr4 23227489 23227799 -179100548 + AluSx SINE Alu 1 308 -4 757 227 153 50 chr4 23227806 23228127 -179100220 + MER93b LTR ERV1 20 373 0 22 35 0 0 chr4 23228587 23228616 -179099731 + AT_rich Low_complexity Low_complexity 1 29 0 305 266 7 79 chr4 23228847 23228986 -179099361 - MIR SINE MIR -4 258 130 17766 53 55 2 chr4 23230322 23232762 -179095585 - L1P LINE L1 -3574 2572 2 1491 264 38 13 chr4 23232768 23233219 -179095128 + MER21B LTR ERV1 257 718 -145 1946 184 44 0 chr4 23234665 23235101 -179093246 - L1 LINE L1 -1574 4572 4118 1246 194 8 0 chr4 23235108 23235345 -179093002 - L1MC1 LINE L1 -50 6283 6045 21 82 0 0 chr4 23235346 23235395 -179092952 + AT_rich Low_complexity Low_complexity 1 49 0 606 275 71 63 chr4 23235449 23235845 -179092502 - L1ME LINE L1 -339 5782 5384 239 262 180 70 chr4 23236442 23236698 -179091649 + L2 LINE L2 2040 2323 -991 967 235 53 15 chr4 23236983 23237323 -179091024 - L1ME LINE L1 -1750 4396 4044 192 260 20 0 chr4 23237325 23237375 -179090972 + L2 LINE L2 3220 3270 -2 355 257 194 29 chr4 23237561 23237736 -179090611 - MIR SINE MIR -1 261 58 2195 100 3 0 chr4 23237897 23238196 -179090151 + AluSg SINE Alu 1 300 -10 294 289 62 0 chr4 23238551 23238648 -179089699 + MIR SINE MIR 132 234 -28 237 307 31 16 chr4 23238942 23239069 -179089278 + L1MC/D LINE L1 5707 5835 -286 322 169 36 0 chr4 23239140 23239223 -179089124 + CT-rich Low_complexity Low_complexity 3 88 0 1429 259 204 2 chr4 23239559 23240054 -179088293 + MLT1G1 LTR MaLR 1 595 0 534 303 45 11 chr4 23240250 23240428 -179087919 - MIR SINE MIR -31 231 48 352 170 19 9 chr4 23240864 23240970 -179087377 + (TCTA)n Simple_repeat Simple_repeat 4 110 0 197 343 58 7 chr4 23241978 23242115 -179086232 + L2 LINE L2 2539 2682 -632 478 283 194 5 chr4 23242303 23242494 -179085853 + MLT1H LTR MaLR 1 227 -322 33 43 0 0 chr4 23243450 23243497 -179084850 + AT_rich Low_complexity Low_complexity 1 47 0 317 260 40 0 chr4 23243508 23243608 -179084739 + L1MC4a LINE L1 7354 7457 -351 455 206 69 74 chr4 23243611 23243800 -179084547 + L1MC4 LINE L1 7616 7803 -239 22 0 0 0 chr4 23243928 23243950 -179084397 + AT_rich Low_complexity Low_complexity 1 22 0 370 22 0 0 chr4 23244052 23244098 -179084249 + L1PA4 LINE L1 6012 6057 -98 2143 128 3 0 chr4 23244346 23244642 -179083705 + AluSx SINE Alu 1 297 -15 23737 67 9 0 chr4 23244644 23247896 -179080451 + L1P LINE L1 2 3282 -2864 518 255 80 15 chr4 23248339 23248602 -179079745 + L1M1 LINE L1 3314 3593 -3972 6687 191 35 68 chr4 23248604 23249130 -179079217 + L1M1 LINE L1 3424 3966 -3599 1760 132 21 18 chr4 23249130 23249433 -179078914 + AluSx SINE Alu 1 304 0 6687 191 35 68 chr4 23249433 23251083 -179077264 + L1M1 LINE L1 3966 5532 -2033 22 56 0 0 chr4 23251290 23251326 -179077021 + AT_rich Low_complexity Low_complexity 1 36 0 14443 31 0 0 chr4 23251326 23253820 -179074527 - L1PA3 LINE L1 0 6155 3664 455 271 90 64 chr4 23254030 23254296 -179074051 + L1ME3A LINE L1 5303 5575 -589 327 298 139 7 chr4 23254416 23254718 -179073629 + L1ME3A LINE L1 5610 5951 -219 2476 58 3 0 chr4 23255654 23255947 -179072400 - AluY SINE Alu -9 302 9 291 224 0 0 chr4 23256047 23256123 -179072224 + A-rich Low_complexity Low_complexity 1 76 0 21 0 0 0 chr4 23256554 23256575 -179071772 + AT_rich Low_complexity Low_complexity 1 21 0 24 85 0 0 chr4 23257713 23257772 -179070575 + AT_rich Low_complexity Low_complexity 1 59 0 2008 125 7 10 chr4 23257999 23258287 -179070060 + AluSp SINE Alu 14 300 -13 32 26 0 0 chr4 23259589 23259628 -179068719 + AT_rich Low_complexity Low_complexity 1 39 0 469 369 24 10 chr4 23259778 23259984 -179068363 - L3 LINE CR1 -23 1554 1346 650 204 49 7 chr4 23261361 23261503 -179066844 + MIR SINE MIR 108 255 -7 286 357 36 0 chr4 23261734 23261874 -179066473 - MIR SINE MIR 0 262 118 244 289 0 11 chr4 23261890 23261980 -179066367 + LTR48B LTR ERV1 1 89 -555 683 186 82 52 chr4 23261999 23262230 -179066117 + MER39 LTR ERV1 296 533 -174 1494 200 73 0 chr4 23263692 23264007 -179064340 - MER58B DNA MER1_type -3 338 1 712 247 121 8 chr4 23264886 23265113 -179063234 + MIR SINE MIR 6 262 0 439 332 5 37 chr4 23266818 23267002 -179061345 + MIR SINE MIR 8 188 -65 297 0 0 0 chr4 23267461 23267494 -179060853 + (TG)n Simple_repeat Simple_repeat 2 34 0 21 36 0 0 chr4 23268191 23268219 -179060128 + AT_rich Low_complexity Low_complexity 1 28 0 249 57 0 0 chr4 23268352 23268387 -179059960 + (TG)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr4 23268634 23268655 -179059692 + AT_rich Low_complexity Low_complexity 1 21 0 1519 121 59 3 chr4 23268863 23269168 -179059179 + MSTC LTR MaLR 1 416 -12 247 271 57 14 chr4 23269419 23269489 -179058858 - L2 LINE L2 -60 3253 3181 1013 162 14 121 chr4 23269781 23270071 -179058276 + L1PB4 LINE L1 5885 6143 -13 351 0 0 0 chr4 23270511 23270550 -179057797 + (TG)n Simple_repeat Simple_repeat 2 40 0 217 281 74 83 chr4 23270746 23270867 -179057480 - L2 LINE L2 0 3272 3153 188 298 48 0 chr4 23271633 23271717 -179056630 + MIR SINE MIR 96 183 -79 232 367 63 13 chr4 23271873 23272031 -179056316 + MIR3 SINE MIR 41 206 -2 397 164 87 48 chr4 23272061 23272165 -179056182 - MLT1A1 LTR MaLR -253 112 5 406 272 0 10 chr4 23272318 23272421 -179055926 + MIR3 SINE MIR 76 177 -31 243 211 8 154 chr4 23272513 23272636 -179055711 - MER94 DNA DNA -4 130 26 23 0 0 0 chr4 23273731 23273754 -179054593 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr4 23274095 23274125 -179054222 + AT_rich Low_complexity Low_complexity 1 30 0 196 363 37 57 chr4 23274216 23274516 -179053831 + L2 LINE L2 2365 2658 -656 711 183 0 0 chr4 23274597 23274717 -179053630 + AluSq/x SINE Alu 1 120 -193 202 111 0 28 chr4 23274728 23274764 -179053583 + (GAAAA)n Simple_repeat Simple_repeat 4 38 0 4088 34 0 19 chr4 23275543 23276071 -179052276 - L1PA4 LINE L1 -137 6018 5501 184 261 114 87 chr4 23276829 23277013 -179051334 + L2 LINE L2 2132 2320 -994 237 316 109 11 chr4 23278124 23278298 -179050049 + Charlie8 DNA MER1_type 45 235 -2182 3156 187 50 23 chr4 23278407 23279091 -179049256 + MER52A LTR ERV1 404 1105 -650 4709 167 30 0 chr4 23279094 23279920 -179048427 + MER52A LTR ERV1 905 1755 0 1955 46 0 77 chr4 23281015 23281276 -179047071 + AluY SINE Alu 53 293 -18 1433 158 7 52 chr4 23281387 23281659 -179046688 + AluJo SINE Alu 5 264 -48 226 293 9 38 chr4 23282499 23282605 -179045742 - MIR SINE MIR -56 206 104 2366 108 0 0 chr4 23284691 23284996 -179043351 - AluSx SINE Alu -7 305 1 790 303 106 25 chr4 23285867 23285962 -179042385 + L2 LINE L2 2440 2526 -787 1947 105 11 22 chr4 23285962 23286239 -179042108 + AluSx SINE Alu 29 302 -10 790 303 106 25 chr4 23286239 23286776 -179041571 + L2 LINE L2 2526 3125 -188 584 276 77 63 chr4 23286868 23287154 -179041193 - L2 LINE L2 -4 3309 3020 325 171 244 0 chr4 23287154 23287236 -179041111 + L2 LINE L2 3208 3309 -4 2362 52 42 0 chr4 23287254 23287543 -179040804 + AluY SINE Alu 1 301 -10 294 203 0 0 chr4 23289350 23289409 -179038938 + L2 LINE L2 3212 3270 -2 699 320 66 8 chr4 23290152 23290586 -179037761 + LTR33 LTR ERVL 3 490 -31 693 303 54 8 chr4 23290836 23291077 -179037270 - MIR SINE MIR 0 262 11 914 219 53 27 chr4 23291829 23292287 -179036060 - Charlie4a DNA MER1_type -5 503 7 2064 120 3 0 chr4 23292912 23293223 -179035124 + AluSq SINE Alu 1 312 0 1881 132 0 84 chr4 23293884 23294217 -179034130 - AluSx SINE Alu -7 305 1 21 57 0 0 chr4 23294512 23294547 -179033800 + AT_rich Low_complexity Low_complexity 1 35 0 313 187 11 11 chr4 23295356 23295447 -179032900 + GA-rich Low_complexity Low_complexity 5 95 0 2223 106 3 0 chr4 23295545 23295847 -179032500 - AluSq SINE Alu 0 313 11 226 171 14 43 chr4 23295921 23295991 -179032356 + (TA)n Simple_repeat Simple_repeat 2 69 0 2500 65 0 7 chr4 23296777 23297085 -179031262 - AluY SINE Alu -5 306 1 257 160 147 27 chr4 23298333 23298408 -179029939 + L1MA5 LINE L1 6217 6300 0 704 88 18 0 chr4 23299728 23299841 -179028506 + (TAGA)n Simple_repeat Simple_repeat 4 118 0 181 83 56 0 chr4 23299846 23299882 -179028465 + (CATA)n Simple_repeat Simple_repeat 1 38 0 483 302 93 0 chr4 23300446 23300764 -179027583 + LTR43 LTR ERV1 201 453 -59 243 292 77 83 chr4 23300785 23300953 -179027394 + MIR SINE MIR 91 257 -5 414 190 101 0 chr4 23301030 23301109 -179027238 + MER31B LTR ERV1 1 87 -379 1078 69 49 113 chr4 23301120 23301323 -179027024 - L1PA5 LINE L1 -1 6153 5964 2394 38 0 0 chr4 23301324 23301611 -179026736 + L1PA5 LINE L1 5659 5945 -209 844 169 70 0 chr4 23301612 23301784 -179026563 + MER31A LTR ERV1 84 267 -218 1318 245 24 12 chr4 23301892 23302231 -179026116 - MLT1A1 LTR MaLR 0 365 23 357 232 77 65 chr4 23302554 23302709 -179025638 + MIR SINE MIR 95 251 -11 372 328 72 1 chr4 23305155 23305398 -179022949 + L1M2 LINE L1 5327 5583 -729 234 0 0 0 chr4 23305419 23305445 -179022902 + (CA)n Simple_repeat Simple_repeat 2 27 0 228 67 0 0 chr4 23305591 23305621 -179022726 + (GA)n Simple_repeat Simple_repeat 1 30 0 293 213 37 93 chr4 23306802 23306910 -179021437 - MIR SINE MIR -7 255 154 468 273 49 49 chr4 23307007 23307212 -179021135 + L1ME3A LINE L1 5632 5836 -334 400 111 0 0 chr4 23307231 23307285 -179021062 - MLT1A1 LTR MaLR 0 365 312 638 121 0 10 chr4 23307285 23307384 -179020963 + MER4A LTR ERV1 1 98 -566 1972 114 3 23 chr4 23307439 23307738 -179020609 + MER4A LTR ERV1 372 664 0 1503 219 6 6 chr4 23307738 23308049 -179020298 - MLT1A1 LTR MaLR -50 315 5 672 221 123 30 chr4 23308057 23308292 -179020055 + L1ME3A LINE L1 5855 6111 -59 210 143 0 0 chr4 23309695 23309730 -179018617 + (TCC)n Simple_repeat Simple_repeat 3 37 0 1086 144 6 0 chr4 23309872 23310053 -179018294 + L1MA6 LINE L1 6086 6267 -33 1123 204 83 4 chr4 23310068 23310137 -179018210 + AluJo SINE Alu 49 111 -201 387 0 0 0 chr4 23310137 23310180 -179018167 + (TAAA)n Simple_repeat Simple_repeat 1 43 0 1123 204 83 4 chr4 23310180 23310340 -179018007 + AluJo SINE Alu 111 296 -16 1677 170 154 16 chr4 23310530 23310906 -179017441 + MSTA LTR MaLR 1 428 0 1782 203 34 10 chr4 23310907 23311291 -179017056 - MSTD LTR MaLR 0 396 4 607 320 90 50 chr4 23311408 23311958 -179016389 + L2 LINE L2 2712 3294 -19 1050 190 9 0 chr4 23312300 23312516 -179015831 + L1MA9 LINE L1 6095 6312 0 2303 209 24 10 chr4 23312544 23313046 -179015301 + L1MC1 LINE L1 5815 6323 -10 379 228 43 0 chr4 23313082 23313174 -179015173 + L1MB4 LINE L1 6053 6148 -32 320 323 10 10 chr4 23314122 23314218 -179014129 - LTR16A LTR ERVL -295 155 60 2962 166 71 0 chr4 23314643 23315193 -179013154 + LTR51 LTR ERV1 1 589 -82 335 275 17 17 chr4 23315412 23315532 -179012815 - MARNA DNA Mariner -347 239 120 449 257 134 29 chr4 23315612 23315783 -179012564 + MER5A DNA MER1_type 1 189 0 252 345 14 49 chr4 23316727 23316869 -179011478 + MIR SINE MIR 48 184 -78 208 295 0 0 chr4 23317972 23318050 -179010297 + (TA)n Simple_repeat Simple_repeat 1 78 0 730 270 202 21 chr4 23318570 23319084 -179009263 + L1MC4a LINE L1 5307 5913 -1895 1328 237 104 23 chr4 23319118 23319591 -179008756 + L1MC4a LINE L1 7297 7807 -1 1530 177 39 14 chr4 23319598 23319881 -179008466 + AluJo SINE Alu 1 290 -22 312 233 14 0 chr4 23322040 23322113 -179006234 + L2 LINE L2 2159 2232 -1082 401 342 0 0 chr4 23322285 23322446 -179005901 + L2 LINE L2 2159 2319 -995 271 289 87 10 chr4 23322554 23322658 -179005689 + L2 LINE L2 3202 3313 0 805 249 97 37 chr4 23322809 23323136 -179005211 - MER77 LTR ERV1 -4 601 277 2039 172 45 12 chr4 23323448 23323867 -179004480 + L1MB4 LINE L1 5622 6054 -126 384 205 107 0 chr4 23323877 23323989 -179004358 + L1MC/D LINE L1 5203 5326 -820 298 188 0 0 chr4 23323995 23324043 -179004304 + L1MC/D LINE L1 5490 5537 -796 8528 184 41 27 chr4 23324047 23325403 -179002944 + L1MA9 LINE L1 3415 4836 -1476 2101 181 56 7 chr4 23325403 23325811 -179002536 - MSTA LTR MaLR 0 428 1 8528 184 41 27 chr4 23325811 23326923 -179001424 + L1MA9 LINE L1 4836 5930 -382 2379 153 52 2 chr4 23326924 23327329 -179001018 - MSTA LTR MaLR -3 425 1 799 175 11 33 chr4 23327329 23327512 -179000835 + L1MA9 LINE L1 5924 6102 -210 34970 65 5 1 chr4 23327518 23333498 -178994849 + L1PA5 LINE L1 13 6011 -143 2441 66 0 13 chr4 23333836 23334139 -178994208 + AluY SINE Alu 1 299 -12 258 305 142 21 chr4 23334274 23334415 -178993932 - MIR SINE MIR 0 262 105 380 263 97 46 chr4 23335243 23335418 -178992929 - MIR SINE MIR -2 260 77 314 321 84 15 chr4 23335571 23335769 -178992578 + MIR SINE MIR 12 214 -36 266 358 67 8 chr4 23336358 23336478 -178991869 + L2 LINE L2 3146 3272 0 213 250 0 0 chr4 23338109 23338157 -178990190 + (TA)n Simple_repeat Simple_repeat 1 48 0 221 339 55 18 chr4 23339401 23339510 -178988837 - MIR3 SINE MIR -28 180 68 536 333 58 42 chr4 23339542 23339989 -178988358 + L2 LINE L2 2855 3308 -5 382 352 83 5 chr4 23341277 23341470 -178986877 + MIR SINE MIR 35 242 -20 1980 172 8 0 chr4 23341500 23341861 -178986486 + L1PA13 LINE L1 4647 5010 -1136 6206 96 8 6 chr4 23342010 23343138 -178985209 + L1PA13 LINE L1 5029 6160 -3 210 56 111 0 chr4 23343305 23343359 -178984988 + (TA)n Simple_repeat Simple_repeat 2 61 0 431 263 8 42 chr4 23343557 23343675 -178984672 - MLT1I LTR MaLR -200 209 96 369 329 40 63 chr4 23343690 23343991 -178984356 - L2 LINE L2 -352 2962 2669 230 224 0 0 chr4 23345710 23345759 -178982588 + L2 LINE L2 3199 3247 -66 663 276 152 9 chr4 23345781 23345991 -178982356 - MIR SINE MIR -20 242 3 244 328 0 0 chr4 23346010 23346071 -178982276 + L2 LINE L2 3194 3254 -18 1810 158 50 3 chr4 23346412 23346735 -178981612 + MER2 DNA MER2_type 8 345 0 424 237 72 17 chr4 23347865 23348006 -178980341 + MIR SINE MIR 22 162 -65 2550 105 6 3 chr4 23348376 23348728 -178979619 - THE1B LTR MaLR -11 353 1 406 250 76 0 chr4 23349048 23349140 -178979207 - MER81 DNA DNA 0 114 16 319 267 0 67 chr4 23349178 23349268 -178979079 - MER81 DNA DNA -30 84 1 1953 197 11 0 chr4 23350034 23350395 -178977952 - MLT1A1 LTR MaLR 0 365 1 685 200 21 7 chr4 23352086 23352226 -178976121 + FLAM_C SINE Alu 2 143 0 2283 80 3 0 chr4 23352789 23353075 -178975272 - AluY SINE Alu -24 287 1 525 309 173 12 chr4 23353497 23353827 -178974520 - L2 LINE L2 -4 3309 2927 267 274 153 16 chr4 23353847 23353971 -178974376 - MIR SINE MIR -72 190 50 1529 215 82 32 chr4 23354152 23354593 -178973754 - MLT1C LTR MaLR -4 463 1 276 248 51 22 chr4 23355342 23355479 -178972868 - L1ME4a LINE L1 -3 6118 5978 31 26 0 0 chr4 23355492 23355530 -178972817 + AT_rich Low_complexity Low_complexity 1 38 0 2507 100 27 14 chr4 23355534 23355904 -178972443 + THE1C LTR MaLR 1 375 0 228 323 121 0 chr4 23356022 23356220 -178972127 - L1ME4a LINE L1 -391 5730 5509 326 273 106 31 chr4 23357987 23358148 -178970199 - MIR SINE MIR -38 224 52 1291 197 62 31 chr4 23358949 23359238 -178969109 - AluJo SINE Alu -14 298 1 25 31 0 0 chr4 23359284 23359316 -178969031 + AT_rich Low_complexity Low_complexity 1 32 0 181 250 96 0 chr4 23359563 23359615 -178968732 + L2 LINE L2 3211 3267 -5 233 429 14 14 chr4 23359729 23359869 -178968478 + L3 LINE CR1 1437 1576 -1 209 108 27 0 chr4 23360389 23360426 -178967921 + GA-rich Low_complexity Low_complexity 4 41 0 705 326 100 19 chr4 23360526 23360955 -178967392 + L2 LINE L2 2832 3295 -18 1573 208 22 25 chr4 23362948 23363314 -178965033 - MLT1A1 LTR MaLR 0 365 1 736 214 90 55 chr4 23363765 23363966 -178964381 - MIR SINE MIR -1 261 54 460 213 0 0 chr4 23364702 23364782 -178963565 + Tigger4(Zombi) DNA MER2_type 1 80 -2651 2749 134 2 22 chr4 23364789 23365235 -178963112 + Tigger4(Zombi) DNA MER2_type 2295 2731 0 314 364 73 40 chr4 23365347 23365594 -178962753 - L2 LINE L2 -252 3061 2807 240 274 161 24 chr4 23366421 23366545 -178961802 - MIR SINE MIR -12 250 110 2243 163 12 86 chr4 23366583 23367074 -178961273 - LTR32 LTR ERVL -6 465 11 951 269 48 38 chr4 23367827 23368225 -178960122 + L1ME3A LINE L1 5637 6038 -132 1611 179 3 14 chr4 23368958 23369270 -178959077 + AluSx SINE Alu 1 309 0 21 0 0 0 chr4 23369584 23369605 -178958742 + AT_rich Low_complexity Low_complexity 1 21 0 578 329 119 9 chr4 23370308 23370527 -178957820 + MIR SINE MIR 2 244 -18 24 0 0 0 chr4 23370528 23370552 -178957795 + AT_rich Low_complexity Low_complexity 1 24 0 1918 146 0 0 chr4 23371546 23371813 -178956534 + AluSx SINE Alu 2 268 -44 434 33 17 0 chr4 23371822 23371882 -178956465 + (TAAA)n Simple_repeat Simple_repeat 2 62 0 7510 175 60 20 chr4 23372596 23373992 -178954355 + L1 LINE L1 10 1460 -6105 4943 164 47 16 chr4 23373970 23374985 -178953362 + L1 LINE L1 5183 6229 -1336 * 412 322 86 12 chr4 23375772 23376017 -178952330 - L1ME LINE L1 -304 5817 5555 769 207 20 0 chr4 23376138 23376288 -178952059 - MER97a DNA MER1_type? -712 182 30 261 322 122 9 chr4 23376361 23376476 -178951871 - L2 LINE L2 -1 3271 3144 541 356 90 23 chr4 23377169 23377647 -178950700 - L2 LINE L2 0 3313 2804 332 326 51 23 chr4 23379427 23379520 -178948827 + MIR SINE MIR 81 170 -92 793 266 18 14 chr4 23379520 23379738 -178948609 - MER20 DNA MER1_type 0 219 1 332 326 51 23 chr4 23379738 23379819 -178948528 + MIR SINE MIR 170 260 -2 711 10 20 59 chr4 23380231 23380332 -178948015 - L1PA4 LINE L1 0 6155 6059 1252 14 0 0 chr4 23380332 23380475 -178947872 + L1PA4 LINE L1 5785 5927 -228 648 242 64 0 chr4 23380838 23380995 -178947352 + MER58A DNA MER1_type 28 194 -30 1181 213 33 84 chr4 23380996 23381475 -178946872 + MLT1C LTR MaLR 1 466 -1 228 309 21 0 chr4 23381816 23381910 -178946437 - L1ME LINE L1 -366 5796 5701 1206 270 59 28 chr4 23381917 23382339 -178946008 + MSTB2 LTR MaLR 23 457 0 416 332 87 12 chr4 23382339 23382592 -178945755 - L1ME LINE L1 -459 5711 5440 25 0 0 0 chr4 23382907 23382932 -178945415 + AT_rich Low_complexity Low_complexity 1 25 0 309 295 29 19 chr4 23383162 23383267 -178945080 + L2 LINE L2 2986 3091 -181 425 313 93 56 chr4 23384154 23384476 -178943871 + L2 LINE L2 2945 3283 -30 2137 136 30 38 chr4 23384476 23384843 -178943504 - THE1B LTR MaLR 0 364 1 425 313 93 56 chr4 23384843 23384875 -178943472 + L2 LINE L2 3283 3312 -1 225 0 0 0 chr4 23386332 23386357 -178941990 + (T)n Simple_repeat Simple_repeat 1 25 0 468 0 0 0 chr4 23386524 23386576 -178941771 + (CA)n Simple_repeat Simple_repeat 1 52 0 255 388 41 0 chr4 23387052 23387150 -178941197 - L2 LINE L2 -12 3301 3200 626 315 131 33 chr4 23387250 23387726 -178940621 - L2 LINE L2 0 3313 2742 245 29 29 0 chr4 23387726 23387760 -178940587 + (TATAA)n Simple_repeat Simple_repeat 5 39 0 626 315 131 33 chr4 23387760 23387940 -178940407 - L2 LINE L2 -571 2742 2581 309 230 81 46 chr4 23387970 23388104 -178940243 + MLT1A2 LTR MaLR 3 150 -215 834 169 14 0 chr4 23388112 23388254 -178940093 + FRAM SINE Alu 1 142 -34 210 118 0 0 chr4 23388261 23388295 -178940052 + (T)n Simple_repeat Simple_repeat 1 34 0 689 161 71 109 chr4 23388306 23388517 -178939830 + MLT1A2 LTR MaLR 172 374 0 341 333 79 12 chr4 23388527 23388692 -178939655 - L2 LINE L2 -38 3275 3100 192 343 55 0 chr4 23388736 23388809 -178939538 - L2 LINE L2 -178 3094 3018 435 303 112 62 chr4 23389292 23389794 -178938553 + L2 LINE L2 2790 3313 0 750 255 41 0 chr4 23389999 23390195 -178938152 - MER58A DNA MER1_type -20 204 1 362 276 168 16 chr4 23390266 23390451 -178937896 - MIR SINE MIR -15 247 35 2054 125 0 7 chr4 23391944 23392255 -178936092 - AluSg SINE Alu 0 310 2 317 273 16 55 chr4 23392315 23392443 -178935904 - MIR SINE MIR -106 156 34 307 205 77 13 chr4 23394332 23394410 -178933937 + MLT1L LTR MaLR 15 97 -518 1428 174 48 65 chr4 23395053 23395247 -178933100 - MER2 DNA MER2_type 0 345 158 1052 158 15 10 chr4 23395247 23395443 -178932904 + L1PB2 LINE L1 5953 6149 -2 1428 174 48 65 chr4 23395443 23395599 -178932748 - MER2 DNA MER2_type -187 158 1 2042 313 109 22 chr4 23395953 23397225 -178931122 + L2 LINE L2 1919 3305 -8 2065 152 3 0 chr4 23398122 23398424 -178929923 + AluSx SINE Alu 2 304 -8 2417 83 0 3 chr4 23399061 23399363 -178928984 - AluY SINE Alu -8 303 3 271 305 121 32 chr4 23399696 23399886 -178928461 + L2 LINE L2 2708 2914 -400 3804 41 2 0 chr4 23399908 23400369 -178927978 - L1PA4 LINE L1 -3 6152 5691 221 220 40 0 chr4 23400645 23400695 -178927652 + L2 LINE L2 3262 3313 0 386 304 82 6 chr4 23400702 23400873 -178927474 + MIR SINE MIR 28 211 -51 210 250 46 93 chr4 23400984 23401092 -178927255 - MIR SINE MIR -48 214 112 707 197 0 7 chr4 23401299 23401436 -178926911 - MLT1D LTR MaLR -369 136 1 312 275 76 15 chr4 23401904 23402035 -178926312 + MIR SINE MIR 114 252 -10 180 0 0 0 chr4 23402167 23402187 -178926160 + (TA)n Simple_repeat Simple_repeat 1 20 0 180 0 0 0 chr4 23402186 23402206 -178926141 + (CA)n Simple_repeat Simple_repeat 2 21 0 485 320 195 29 chr4 23403631 23404222 -178924125 + L2 LINE L2 1665 2353 -961 295 352 25 92 chr4 23404627 23404942 -178923405 + L2 LINE L2 2869 3162 -110 260 297 20 0 chr4 23405407 23405508 -178922839 + Charlie7 DNA MER1_type 2510 2612 0 240 284 0 0 chr4 23405571 23405645 -178922702 + A-rich Low_complexity Low_complexity 1 74 0 195 354 15 0 chr4 23405772 23405837 -178922510 + L2 LINE L2 2715 2780 -534 257 288 168 56 chr4 23406126 23406251 -178922096 + L2 LINE L2 3134 3272 0 443 183 32 11 chr4 23406974 23407067 -178921280 - MSTB LTR MaLR -329 97 3 556 236 21 36 chr4 23407281 23407421 -178920926 + MIR SINE MIR 11 148 -114 466 222 9 9 chr4 23408314 23408422 -178919925 - MIR SINE MIR -4 258 151 223 226 0 19 chr4 23408510 23408563 -178919784 + (TA)n Simple_repeat Simple_repeat 1 52 0 2150 115 45 25 chr4 23408806 23409163 -178919184 + THE1B LTR MaLR 1 364 0 201 311 143 34 chr4 23409164 23409283 -178919064 - L2 LINE L2 -226 3087 2956 * 288 310 106 0 chr4 23409282 23409395 -178918952 - MIR SINE MIR -126 136 12 210 405 63 0 chr4 23409715 23409794 -178918553 + L2 LINE L2 3160 3243 -29 411 314 0 7 chr4 23409815 23409955 -178918392 + L2 LINE L2 2269 2407 -907 213 337 33 0 chr4 23410022 23410114 -178918233 + L2 LINE L2 2551 2645 -669 363 296 63 39 chr4 23410219 23410425 -178917922 + L2 LINE L2 2272 2482 -832 206 295 64 0 chr4 23411006 23411084 -178917263 + L2 LINE L2 3190 3272 0 2166 107 0 41 chr4 23411748 23412065 -178916282 + AluSx SINE Alu 1 304 -8 451 293 26 0 chr4 23412121 23412237 -178916110 - L2 LINE L2 -1 3271 3153 392 275 97 100 chr4 23416225 23416761 -178911586 - L1M2 LINE L1 -5457 1392 755 471 301 207 5 chr4 23417645 23417838 -178910509 + MIR SINE MIR 17 248 -14 225 279 0 29 chr4 23417869 23417937 -178910410 + L2 LINE L2 3236 3301 -12 628 292 245 2 chr4 23417939 23418347 -178910000 - L2 LINE L2 -1 3312 2806 516 221 152 44 chr4 23418657 23418783 -178909564 + MIR SINE MIR 8 119 -143 2414 98 0 0 chr4 23418783 23419089 -178909258 + AluSx SINE Alu 1 306 -6 516 221 152 44 chr4 23419089 23419166 -178909181 + MIR SINE MIR 119 233 -29 225 169 0 42 chr4 23419478 23419549 -178908798 + (TATAA)n Simple_repeat Simple_repeat 1 68 0 689 335 30 0 chr4 23419972 23420202 -178908145 - MIR SINE MIR -25 237 1 422 274 54 36 chr4 23420202 23420368 -178907979 + MIR SINE MIR 40 208 -54 525 207 103 45 chr4 23420547 23420750 -178907597 - MIR SINE MIR -15 247 38 254 317 106 19 chr4 23420782 23420886 -178907461 - MER5A DNA MER1_type -5 184 72 445 263 33 0 chr4 23420933 23421085 -178907262 - L1MA10 LINE L1 0 6334 6178 687 108 102 54 chr4 23421113 23421279 -178907068 - L1MC2 LINE L1 -37 6307 6134 974 215 48 4 chr4 23421303 23421531 -178906816 + MLT1B LTR MaLR 153 390 0 428 263 151 20 chr4 23421580 23421732 -178906615 + MER5A DNA MER1_type 12 183 -6 1895 142 3 37 chr4 23421732 23422055 -178906292 + AluJo SINE Alu 1 312 0 241 250 0 0 chr4 23422535 23422591 -178905756 - MIR SINE MIR -110 152 97 2266 105 0 3 chr4 23423212 23423518 -178904829 - AluSq SINE Alu -8 305 1 242 235 111 12 chr4 23424535 23424616 -178903731 - L2 LINE L2 -41 3272 3184 944 235 163 56 chr4 23424727 23425164 -178903183 - MLT1H LTR MaLR -7 542 46 1771 212 11 6 chr4 23425164 23425527 -178902820 + MLT1A1 LTR MaLR 1 365 0 944 235 163 56 chr4 23425527 23425575 -178902772 - MLT1H LTR MaLR -503 46 5 393 234 16 70 chr4 23425598 23425726 -178902621 - MIR SINE MIR -140 122 2 389 336 137 38 chr4 23425754 23426536 -178901811 - L2 LINE L2 -177 3095 2224 1818 152 173 14 chr4 23426537 23426906 -178901441 + MSTA LTR MaLR 1 428 0 772 252 111 9 chr4 23426957 23427183 -178901164 - MIR SINE MIR -12 250 2 210 328 42 50 chr4 23427464 23427583 -178900764 - L2 LINE L2 -8 3264 3147 4918 213 47 25 chr4 23427852 23428721 -178899626 + Charlie1a DNA MER1_type 7 920 -1841 2296 109 3 0 chr4 23428721 23429033 -178899314 - AluSp SINE Alu 0 313 1 4918 213 47 25 chr4 23429033 23429581 -178898766 + Charlie1a DNA MER1_type 920 1455 0 255 381 0 31 chr4 23429638 23429735 -178898612 - L2 LINE L2 -26 3246 3153 25 31 0 0 chr4 23430025 23430057 -178898290 + AT_rich Low_complexity Low_complexity 1 32 0 325 270 70 20 chr4 23430077 23430177 -178898170 - L1M4c LINE L1 -3987 2553 2449 657 185 185 12 chr4 23430268 23430430 -178897917 - MER20 DNA MER1_type 0 219 30 318 261 0 0 chr4 23430430 23430495 -178897852 - MER20 DNA MER1_type -154 65 1 532 296 87 36 chr4 23430813 23431648 -178896699 - L1M4c LINE L1 -4681 1861 1136 207 0 0 0 chr4 23431826 23431849 -178896498 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 230 178 257 30 chr4 23432008 23432109 -178896238 - MER5C DNA MER1_type -200 124 1 2087 113 3 0 chr4 23432771 23433053 -178895294 + AluSp SINE Alu 1 283 -30 694 293 72 78 chr4 23433106 23433581 -178894766 + MLT1K LTR MaLR 4 475 -113 261 232 242 11 chr4 23433803 23433898 -178894449 + L2 LINE L2 3197 3313 0 425 269 50 8 chr4 23433916 23434035 -178894312 - L2 LINE L2 0 3313 3190 1845 173 12 6 chr4 23434035 23434364 -178893983 + MLT1A1 LTR MaLR 1 331 -34 193 116 93 23 chr4 23434372 23434415 -178893932 + L2 LINE L2 3161 3206 -107 397 294 159 0 chr4 23434553 23434767 -178893580 - LTR33 LTR ERVL -39 482 235 27 62 0 0 chr4 23435014 23435062 -178893285 + AT_rich Low_complexity Low_complexity 1 48 0 183 389 0 0 chr4 23435280 23435352 -178892995 - L2 LINE L2 -683 2631 2560 221 287 129 20 chr4 23436083 23436184 -178892163 - L2 LINE L2 -1 3312 3201 1439 181 7 11 chr4 23436342 23436619 -178891728 - MLT1A1 LTR MaLR 0 365 90 1308 233 3 23 chr4 23436632 23436932 -178891415 + MLT1A1 LTR MaLR 72 365 0 517 172 11 0 chr4 23436932 23437015 -178891332 - MLT1A1 LTR MaLR -272 93 10 203 328 16 0 chr4 23437140 23437201 -178891146 + L2 LINE L2 3210 3271 -1 1552 247 19 56 chr4 23437289 23437804 -178890543 + MLT1D LTR MaLR 1 496 -9 356 316 71 9 chr4 23438468 23438791 -178889556 + L1MEc LINE L1 1401 1743 -4653 852 274 68 58 chr4 23439000 23439467 -178888880 + MLT1H LTR MaLR 71 542 -7 1273 122 0 0 chr4 23439746 23439926 -178888421 - AluSg/x SINE Alu -2 307 128 1208 153 44 16 chr4 23441093 23441406 -178886941 + LTR54 LTR ERV1 1 376 -134 437 307 73 59 chr4 23491443 23491730 -178836617 - MER115 DNA AcHobo -182 511 221 2043 224 76 52 chr4 23491878 23491908 -178836439 - MER21B LTR ERV1 -57 806 778 1702 161 102 15 chr4 23491908 23492243 -178836104 + THE1B LTR MaLR 1 364 0 11697 95 2 0 chr4 23492243 23493820 -178834527 + THE1B-int LTR MaLR 1 1580 0 2202 136 33 22 chr4 23493820 23494180 -178834167 + THE1B LTR MaLR 1 364 0 2043 224 76 52 chr4 23494180 23494884 -178833463 - MER21B LTR ERV1 -84 779 52 365 328 0 24 chr4 23496759 23496884 -178831463 + L2 LINE L2 3190 3311 -2 1949 157 28 0 chr4 23497584 23497871 -178830476 - AluJb SINE Alu -16 296 2 301 327 62 0 chr4 23497872 23497985 -178830362 - L2 LINE L2 -8 3264 3145 335 202 11 0 chr4 23498468 23498557 -178829790 + (TA)n Simple_repeat Simple_repeat 2 91 0 322 332 11 106 chr4 23499440 23499723 -178828624 - L2 LINE L2 0 3272 3017 470 279 106 8 chr4 23499849 23500086 -178828261 + MIR SINE MIR 3 262 0 383 195 35 71 chr4 23501357 23501470 -178826877 + MIR SINE MIR 73 181 -81 456 299 22 0 chr4 23502582 23502716 -178825631 + MLT1H LTR MaLR 212 348 -201 1551 186 6 125 chr4 23502978 23503457 -178824890 - LTR8 LTR ERV1 -269 422 1 572 226 86 86 chr4 23503457 23503492 -178824855 - MER39 LTR ERV1 -134 573 539 2387 61 0 3 chr4 23503492 23503785 -178824562 - AluY SINE Alu -19 292 1 572 226 86 86 chr4 23503785 23504063 -178824284 - MER39 LTR ERV1 -167 540 260 471 143 71 0 chr4 23505488 23505572 -178822775 + Tigger1 DNA MER2_type 1516 1605 -813 294 29 0 0 chr4 23505573 23505608 -178822739 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 3737 144 3 2 chr4 23505611 23506229 -178822118 + Tigger1 DNA MER2_type 1800 2418 0 2390 238 67 18 chr4 23506890 23507828 -178820519 + L1M4 LINE L1 3856 4839 -1307 717 58 0 0 chr4 23507829 23507916 -178820431 - AluY SINE Alu -20 291 205 1245 197 74 54 chr4 23507917 23508393 -178819954 + L1M4 LINE L1 4832 5317 -841 347 285 131 0 chr4 23508399 23508529 -178819818 - MIR SINE MIR -66 196 50 185 108 27 0 chr4 23508670 23508707 -178819640 + (CA)n Simple_repeat Simple_repeat 2 39 0 381 158 49 6 chr4 23508735 23508899 -178819448 + (CA)n Simple_repeat Simple_repeat 1 171 0 245 154 44 0 chr4 23508924 23509015 -178819332 + (CA)n Simple_repeat Simple_repeat 1 95 0 491 234 54 0 chr4 23509141 23509252 -178819095 - MER45A DNA AcHobo -26 152 36 674 209 29 7 chr4 23509285 23509424 -178818923 + FRAM SINE Alu 20 161 -15 36782 71 16 14 chr4 23509716 23511812 -178816535 + L1PA5 LINE L1 1 2091 -4063 881 62 0 0 chr4 23511812 23511925 -178816422 + L1PA5 LINE L1 6039 6151 -3 36782 71 16 14 chr4 23511925 23515957 -178812390 + L1PA5 LINE L1 2091 6147 -7 223 318 163 0 chr4 23516452 23516581 -178811766 + MIR SINE MIR 77 226 -36 241 326 45 11 chr4 23517474 23517563 -178810784 + MIR SINE MIR 9 100 -162 449 320 102 15 chr4 23517643 23517840 -178810507 + MIR SINE MIR 4 217 -45 2153 121 0 0 chr4 23517857 23518154 -178810193 + AluSq SINE Alu 1 297 -16 1877 159 3 19 chr4 23518700 23519059 -178809288 - L1M2 LINE L1 -569 5743 5391 649 276 93 32 chr4 23519059 23519305 -178809042 - MIR SINE MIR 0 262 2 209 377 61 9 chr4 23519947 23520061 -178808286 - MIR SINE MIR -124 138 19 237 370 36 7 chr4 23520513 23520651 -178807696 + L2 LINE L2 3168 3309 -4 1486 161 60 28 chr4 23520865 23521218 -178807129 + THE1C LTR MaLR 12 375 0 313 355 30 15 chr4 23522217 23522417 -178805930 + HERV16 LTR ERVL 480 682 -5082 274 368 24 42 chr4 23522675 23523009 -178805338 + HERV16 LTR ERVL 1091 1418 -4346 7120 129 32 8 chr4 23523316 23524519 -178803828 - Tigger3b DNA MER2_type 0 1231 1 260 358 50 17 chr4 23524594 23524714 -178803633 + HERV16 LTR ERVL 2876 2999 -1997 1267 337 63 27 chr4 23524795 23525949 -178802398 + HERV16 LTR ERVL 3150 4345 -1419 335 361 33 7 chr4 23526341 23526615 -178801732 + HERV16 LTR ERVL 5047 5327 -327 1886 155 132 5 chr4 23527010 23527390 -178800957 - MSTA LTR MaLR 0 428 1 311 313 119 0 chr4 23527696 23527830 -178800517 + LTR67 LTR ERVL 408 557 0 2331 255 43 7 chr4 23527909 23528634 -178799713 - L1ME2 LINE L1 -6 6158 5408 2122 95 7 3 chr4 23528640 23528936 -178799411 + THE1B LTR MaLR 68 364 0 3584 257 72 7 chr4 23528936 23530417 -178797930 - L1ME2 LINE L1 -745 5401 3836 244 103 0 0 chr4 23530432 23530471 -178797876 - L1PB1 LINE L1 -23 6128 6090 * 5882 153 23 9 chr4 23530468 23532202 -178796145 - L1PB1 LINE L1 0 6151 4389 185 0 40 0 chr4 23532202 23532227 -178796120 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 5882 153 23 9 chr4 23532227 23532429 -178795918 - L1PB1 LINE L1 -1762 4389 4191 508 275 181 14 chr4 23532432 23532792 -178795555 - L1ME2 LINE L1 -2300 3846 3427 688 160 0 0 chr4 23532825 23532950 -178795397 + L1MA3 LINE L1 3826 3950 -2196 28972 34 14 1 chr4 23532980 23539010 -178789337 + L1PA2 LINE L1 2 6155 0 6663 185 25 9 chr4 23539022 23540451 -178787896 + L1MA3 LINE L1 3951 5401 -745 4737 154 17 19 chr4 23540456 23541296 -178787051 + L1MA3 LINE L1 5447 6284 -21 385 272 115 10 chr4 23541381 23541694 -178786653 - L1ME2 LINE L1 -2789 3357 3012 2509 105 39 3 chr4 23541788 23542150 -178786197 + THE1C LTR MaLR 1 375 0 472 301 21 43 chr4 23542248 23542527 -178785820 - L1ME2 LINE L1 -3361 2785 2513 12613 214 30 17 chr4 23542580 23544661 -178783686 - L1MEc LINE L1 -1241 4974 2862 1415 75 0 0 chr4 23544661 23544848 -178783499 - L1PA5 LINE L1 0 6154 5968 12613 214 30 17 chr4 23544848 23546083 -178782264 - L1MEc LINE L1 -3353 2862 1644 242 209 66 55 chr4 23546517 23546608 -178781739 - L1ME LINE L1 -509 5612 5521 22 0 0 0 chr4 23547155 23547177 -178781170 + AT_rich Low_complexity Low_complexity 1 22 0 3621 109 31 7 chr4 23547386 23547927 -178780420 - L1PA13 LINE L1 -25 6138 5585 3495 145 35 2 chr4 23547936 23548761 -178779586 + L1PA13 LINE L1 4733 5575 -588 1107 324 34 43 chr4 23549796 23550663 -178777684 + L2 LINE L2 2445 3313 0 188 370 14 75 chr4 23552391 23552537 -178775810 - L2 LINE L2 0 3272 3136 339 241 51 0 chr4 23552572 23552651 -178775696 + MER7A DNA MER2_type 1 81 -265 4711 130 43 49 chr4 23552671 23552816 -178775531 - L1PA16 LINE L1 -1 6165 6021 2560 45 0 19 chr4 23552816 23553130 -178775217 - AluY SINE Alu 0 311 4 2154 123 7 0 chr4 23553130 23553431 -178774916 - AluSg SINE Alu -7 303 1 4711 130 43 49 chr4 23553431 23554186 -178774161 - L1PA16 LINE L1 -143 6023 5269 1456 169 23 19 chr4 23554187 23554453 -178773894 + MER7A DNA MER2_type 69 335 -1 216 259 0 0 chr4 23554465 23554546 -178773801 + (TA)n Simple_repeat Simple_repeat 2 82 0 1844 175 15 18 chr4 23554573 23554916 -178773431 - MLT2C1 LTR ERVL -53 344 3 479 381 47 27 chr4 23554919 23555218 -178773129 - L2 LINE L2 -107 3165 2861 259 319 56 21 chr4 23555429 23555758 -178772589 + L2 LINE L2 2810 3224 -89 236 326 52 37 chr4 23556287 23556422 -178771925 + MIR SINE MIR 126 262 0 192 122 0 189 chr4 23557408 23557482 -178770865 - L2 LINE L2 -181 3091 3032 1704 164 23 49 chr4 23557671 23558006 -178770341 - THE1C LTR MaLR 0 375 50 2291 124 22 28 chr4 23558006 23558370 -178769977 - THE1B LTR MaLR 0 364 3 1704 164 23 49 chr4 23558370 23558419 -178769928 - THE1C LTR MaLR -325 50 1 25 31 0 0 chr4 23558913 23558945 -178769402 + AT_rich Low_complexity Low_complexity 1 32 0 2047 141 16 37 chr4 23559242 23559624 -178768723 - THE1C LTR MaLR -1 374 1 255 292 0 0 chr4 23559640 23559705 -178768642 + (CATA)n Simple_repeat Simple_repeat 3 67 0 606 219 0 16 chr4 23559872 23559995 -178768352 + FLAM_A SINE Alu 2 122 -11 2211 130 11 22 chr4 23562331 23562699 -178765648 - THE1B LTR MaLR 0 364 1 11341 107 4 1 chr4 23562699 23564275 -178764072 - THE1B-int LTR MaLR 0 1580 1 2244 136 8 19 chr4 23564275 23564643 -178763704 - THE1B LTR MaLR 0 364 1 184 302 48 16 chr4 23565150 23565213 -178763134 - L2 LINE L2 -3 3269 3205 445 313 111 15 chr4 23566808 23567032 -178761315 - MIR SINE MIR -19 243 2 1454 182 46 89 chr4 23567037 23567432 -178760915 + MLT1B LTR MaLR 5 382 -8 1194 76 10 26 chr4 23568060 23568366 -178759981 + (TAGA)n Simple_repeat Simple_repeat 1 301 0 1013 233 82 48 chr4 23569899 23570251 -178758096 - MLT1A1 LTR MaLR 0 365 2 692 183 35 28 chr4 23570543 23570685 -178757662 + MIR SINE MIR 38 180 -82 22 0 0 0 chr4 23570718 23570740 -178757607 + AT_rich Low_complexity Low_complexity 1 22 0 361 293 120 20 chr4 23570759 23570909 -178757438 - MIR SINE MIR -26 236 72 1846 211 114 71 chr4 23571180 23571802 -178756545 + MLT1E1 LTR MaLR 3 651 -3 2524 57 0 13 chr4 23571809 23572124 -178756223 + AluY SINE Alu 1 311 0 188 435 0 0 chr4 23572205 23572297 -178756050 - MIR3 SINE MIR -21 187 96 594 277 98 18 chr4 23572792 23573016 -178755331 + MIR SINE MIR 13 254 -8 2127 109 10 0 chr4 23574474 23574767 -178753580 + AluSp SINE Alu 1 296 -17 378 282 34 51 chr4 23575272 23575389 -178752958 + L2 LINE L2 3179 3293 -20 673 263 44 31 chr4 23575393 23575621 -178752726 - MIR SINE MIR -19 243 13 540 267 27 63 chr4 23575927 23576148 -178752199 - MIR SINE MIR -1 261 49 198 254 0 36 chr4 23576253 23576308 -178752039 - MIR SINE MIR -136 72 20 716 112 0 0 chr4 23576314 23576465 -178751882 - AluSp/q SINE Alu 0 337 187 1613 183 55 55 chr4 23576941 23577308 -178751039 - MLT1A2 LTR MaLR -7 367 1 3921 171 69 17 chr4 23577623 23578408 -178749939 + LTR1B LTR ERV1 1 826 0 691 179 342 15 chr4 23579448 23579635 -178748712 - MLT2B2 LTR ERVL 0 515 265 516 100 62 0 chr4 23579635 23579715 -178748632 + PABL_A LTR ERV1 1 85 -575 10349 87 6 1 chr4 23579715 23581173 -178747174 - L1P LINE L1 -1479 4667 3203 4239 85 9 7 chr4 23581173 23581748 -178746599 + PABL_B LTR ERV1 92 667 0 1589 176 11 0 chr4 23581748 23582010 -178746337 - MLT2B2 LTR ERVL -250 265 1 346 259 54 27 chr4 23582105 23582252 -178746095 - HAL1 LINE L1 -476 2031 1881 1997 139 40 32 chr4 23582403 23582749 -178745598 - THE1B LTR MaLR -15 349 1 1173 267 32 19 chr4 23582754 23583125 -178745222 - HAL1 LINE L1 -831 1676 1301 400 304 25 13 chr4 23583192 23583350 -178744997 - MLT1E LTR MaLR -433 160 1 2044 58 11 4 chr4 23584625 23584885 -178743462 - L1PA7 LINE L1 -361 5793 5532 2804 62 0 6 chr4 23584888 23585245 -178743102 + L1PA7 LINE L1 5795 6149 -5 281 102 41 0 chr4 23585245 23585294 -178743053 + (TATG)n Simple_repeat Simple_repeat 3 53 0 262 327 89 10 chr4 23585497 23585598 -178742749 + L2 LINE L2 3187 3295 -18 581 302 40 24 chr4 23585920 23586172 -178742175 + MIR SINE MIR 4 259 -3 360 275 78 34 chr4 23586174 23586432 -178741915 + MLT1J2 LTR MaLR 3 226 -183 671 180 8 8 chr4 23586926 23587048 -178741299 - MLT1B LTR MaLR -7 383 262 205 143 16 16 chr4 23587156 23587219 -178741128 + (TA)n Simple_repeat Simple_repeat 2 64 0 306 0 0 0 chr4 23587226 23587260 -178741087 + (TG)n Simple_repeat Simple_repeat 2 35 0 208 161 18 36 chr4 23587468 23587524 -178740823 + T-rich Low_complexity Low_complexity 1 55 0 213 319 90 24 chr4 23587615 23587781 -178740566 + L3 LINE CR1 580 756 -821 25 95 0 0 chr4 23588352 23588426 -178739921 + AT_rich Low_complexity Low_complexity 1 74 0 1445 214 0 21 chr4 23588431 23588754 -178739593 + AluJb SINE Alu 1 317 0 761 261 128 28 chr4 23588981 23589341 -178739006 - L2 LINE L2 -1 3312 2917 805 291 160 27 chr4 23589362 23589836 -178738511 + L3 LINE CR1 958 1494 -83 2262 111 0 3 chr4 23589991 23590297 -178738050 - AluSg SINE Alu -5 305 1 2075 115 4 7 chr4 23590757 23591083 -178737264 + AluSg SINE Alu 4 328 0 216 364 0 0 chr4 23591220 23591297 -178737050 + L2 LINE L2 3196 3272 0 231 261 31 0 chr4 23591316 23591381 -178736966 - MARNA DNA Mariner -112 474 408 228 245 144 50 chr4 23591589 23591728 -178736619 + L2 LINE L2 2520 2671 -643 461 296 26 20 chr4 23591758 23591910 -178736437 + MIR SINE MIR 59 211 -51 386 261 106 67 chr4 23592227 23592407 -178735940 + L2 LINE L2 3085 3271 -1 1902 149 88 25 chr4 23593589 23593986 -178734361 + MER65A LTR ERV1 1 422 -23 329 325 41 35 chr4 23594027 23594196 -178734151 - MIR SINE MIR -87 175 6 2500 84 29 0 chr4 23594221 23594566 -178733781 + THE1A LTR MaLR 1 355 0 5740 108 11 1 chr4 23594567 23595363 -178732984 + THE1A-int LTR MaLR 2 805 -775 3258 96 5 0 chr4 23595369 23595797 -178732550 + THE1A-int LTR MaLR 1151 1580 0 2622 88 6 0 chr4 23595797 23596150 -178732197 + THE1A LTR MaLR 1 355 0 255 307 0 23 chr4 23596150 23596238 -178732109 + (CATATA)n Simple_repeat Simple_repeat 1 86 0 359 370 14 7 chr4 23598153 23598291 -178730056 - L2 LINE L2 0 3272 3134 2212 116 0 7 chr4 23598309 23598611 -178729736 + AluSx SINE Alu 1 300 -12 248 174 20 0 chr4 23598808 23598872 -178729475 - MLT1I LTR MaLR -26 541 307 2336 51 3 0 chr4 23598972 23599265 -178729082 - L1PA4 LINE L1 0 6155 5862 5226 25 0 0 chr4 23599265 23600040 -178728307 + L1PA4 LINE L1 5091 5865 -290 303 268 23 19 chr4 23600105 23600208 -178728139 - MLT1I LTR MaLR -258 151 53 406 296 130 0 chr4 23601292 23601454 -178726893 - MIR SINE MIR -14 248 66 979 309 38 16 chr4 23601653 23602019 -178726328 + HAL1 LINE L1 261 634 -1873 593 239 77 66 chr4 23602047 23602411 -178725936 + HAL1 LINE L1 2131 2498 -9 394 271 56 39 chr4 23602529 23602677 -178725670 + MIR3 SINE MIR 14 166 -42 1103 45 0 0 chr4 23603174 23603308 -178725039 + L1PA5 LINE L1 6008 6141 -13 450 0 0 0 chr4 23603310 23603360 -178724987 + (TA)n Simple_repeat Simple_repeat 1 50 0 318 283 127 73 chr4 23603698 23603906 -178724441 - MLT1J1 LTR MaLR -114 332 100 1897 194 29 5 chr4 23603906 23604287 -178724060 + MLT1B LTR MaLR 1 390 0 318 283 127 73 chr4 23604287 23604392 -178723955 - MLT1J1 LTR MaLR -346 100 2 183 244 52 122 chr4 23605376 23605491 -178722856 - L2 LINE L2 -86 3227 3121 * 450 284 69 27 chr4 23605486 23605771 -178722576 - L2 LINE L2 -559 2755 2422 1017 200 26 0 chr4 23605978 23606173 -178722174 + LTR32 LTR ERVL 15 214 -257 4240 79 32 29 chr4 23606173 23607219 -178721128 - MER11A LTR ERVK 0 1266 1 1182 220 20 4 chr4 23607219 23607464 -178720883 + LTR32 LTR ERVL 209 457 -14 862 189 0 7 chr4 23609132 23609285 -178719062 - MER61A LTR ERV1 -191 152 1 197 219 37 122 chr4 23609744 23609826 -178718521 + MIR SINE MIR 118 192 -70 630 306 47 35 chr4 23609827 23610085 -178718262 + MIR SINE MIR 2 262 0 282 287 160 13 chr4 23610130 23610280 -178718067 - MIR SINE MIR -2 260 89 190 371 52 26 chr4 23610440 23610556 -178717791 - MIR SINE MIR -28 234 116 459 313 67 33 chr4 23611515 23611762 -178716585 + MIR SINE MIR 8 257 -5 684 301 56 5 chr4 23612480 23612696 -178715651 - MIR SINE MIR -20 242 16 268 289 87 19 chr4 23615078 23615182 -178713165 + L2 LINE L2 3158 3268 -4 * 336 274 24 65 chr4 23615151 23615275 -178713072 - L2 LINE L2 -3 3310 3192 231 170 0 0 chr4 23615318 23615365 -178712982 + (TGAA)n Simple_repeat Simple_repeat 3 49 0 517 311 101 35 chr4 23616023 23616074 -178712273 + LTR16A1 LTR ERVL 2 48 -409 1673 175 45 17 chr4 23616074 23616429 -178711918 - MLT1A1 LTR MaLR 0 365 1 517 311 101 35 chr4 23616429 23616805 -178711542 + LTR16A1 LTR ERVL 48 457 0 210 236 0 36 chr4 23617324 23617379 -178710968 + (CATATA)n Simple_repeat Simple_repeat 1 53 0 345 285 102 7 chr4 23617384 23617521 -178710826 - MIR3 SINE MIR -25 183 34 183 375 0 11 chr4 23618718 23618806 -178709541 + MER5A DNA MER1_type 27 113 -76 854 192 0 0 chr4 23619046 23619216 -178709131 + AluJb SINE Alu 138 307 0 270 293 93 27 chr4 23620363 23620513 -178707834 - MIR SINE MIR -74 188 29 1913 225 59 17 chr4 23620848 23621418 -178706929 + L1MC4a LINE L1 6176 6358 -1 2169 214 65 62 chr4 23621977 23622869 -178705478 - Charlie2 DNA MER1_type 0 2862 1968 30 45 0 0 chr4 23622875 23622919 -178705428 + AT_rich Low_complexity Low_complexity 1 44 0 590 252 58 71 chr4 23623029 23623338 -178705009 - Charlie2 DNA MER1_type -2453 329 25 508 213 50 14 chr4 23623544 23623685 -178704662 - MER103 DNA DNA -15 151 6 206 364 66 25 chr4 23624306 23624427 -178703920 + MIR SINE MIR 16 141 -67 2856 170 19 14 chr4 23625982 23626494 -178701853 - MLT2B2 LTR ERVL 0 515 1 389 340 28 14 chr4 23626609 23626753 -178701594 + MIR SINE MIR 15 160 -102 3107 21 0 19 chr4 23626755 23627128 -178701219 - L1PA2 LINE L1 0 6155 5790 4676 12 0 0 chr4 23627128 23628032 -178700315 + L1PA2 LINE L1 4884 5787 -368 231 326 22 0 chr4 23628550 23628642 -178699705 + MIR3 SINE MIR 93 186 -22 289 237 34 59 chr4 23628722 23628840 -178699507 + Charlie8 DNA MER1_type 66 180 -2237 477 291 55 39 chr4 23628954 23629221 -178699126 + L2 LINE L2 2917 3303 -10 1354 118 81 0 chr4 23630121 23630332 -178698015 - MER30 DNA MER1_type -2 228 1 27 29 0 0 chr4 23630658 23630692 -178697655 + AT_rich Low_complexity Low_complexity 1 34 0 267 398 41 29 chr4 23631042 23631213 -178697134 + L2 LINE L2 3091 3263 -9 271 289 82 24 chr4 23632277 23632485 -178695862 + L1ME1 LINE L1 4034 4253 -1893 2157 235 94 20 chr4 23632497 23633227 -178695120 + L1ME1 LINE L1 5383 6156 -10 348 134 0 0 chr4 23633492 23633504 -178694843 + (GA)n Simple_repeat Simple_repeat 2 13 -55 195 69 0 0 chr4 23633504 23633533 -178694814 + (CA)n Simple_repeat Simple_repeat 2 30 0 348 134 0 0 chr4 23633533 23633587 -178694760 + (GA)n Simple_repeat Simple_repeat 12 68 0 374 258 68 30 chr4 23633715 23633847 -178694500 + MLT1J LTR MaLR 226 362 -149 303 298 94 41 chr4 23633979 23634150 -178694197 - MIR3 SINE MIR -27 181 2 249 361 25 17 chr4 23634167 23634286 -178694061 - L2 LINE L2 -15 3298 3179 1796 144 20 7 chr4 23634845 23635144 -178693203 + AluSx SINE Alu 1 303 -9 261 188 38 0 chr4 23635186 23635266 -178693081 + (TA)n Simple_repeat Simple_repeat 1 83 0 230 304 0 14 chr4 23635299 23635368 -178692979 + L2 LINE L2 3232 3299 -14 2463 268 49 69 chr4 23636671 23637858 -178690489 + L1MEc LINE L1 331 1541 -4855 2337 61 0 10 chr4 23637858 23638152 -178690195 + AluY SINE Alu 6 296 -15 2463 268 49 69 chr4 23638152 23638514 -178689833 + L1MEc LINE L1 1541 1838 -4558 2018 131 7 0 chr4 23638514 23638797 -178689550 + AluSx SINE Alu 2 286 -26 2463 268 49 69 chr4 23638797 23639113 -178689234 + L1MEc LINE L1 1838 2159 -4237 668 221 13 13 chr4 23639138 23639296 -178689051 - MLT1H LTR MaLR 0 567 410 692 151 0 0 chr4 23639305 23639411 -178688936 + U6 snRNA snRNA 2 107 0 1189 143 20 0 chr4 23639412 23639615 -178688732 + L1MA4A LINE L1 6087 6293 -10 416 276 136 53 chr4 23641595 23641918 -178686429 + MLT1H1 LTR MaLR 179 528 -27 743 293 88 26 chr4 23642384 23642691 -178685656 - MLT1H LTR MaLR -202 347 22 186 280 40 0 chr4 23644075 23644125 -178684222 - L2 LINE L2 -12 3260 3209 7353 40 10 0 chr4 23645357 23646725 -178681622 - L1PA5 LINE L1 -7 6147 4774 9996 29 5 1 chr4 23646727 23647930 -178680417 + L1PA5 LINE L1 3549 4756 -1390 299 291 170 32 chr4 23648289 23648373 -178679974 + LTR33A LTR ERVL 102 173 -350 1811 153 129 21 chr4 23648373 23648759 -178679588 + MSTA LTR MaLR 1 428 0 299 291 170 32 chr4 23648759 23648921 -178679426 + LTR33A LTR ERVL 173 382 -141 2210 104 7 3 chr4 23649286 23649584 -178678763 - AluSx SINE Alu -13 299 1 1145 314 110 13 chr4 23649748 23650276 -178678071 + L2 LINE L2 2352 2930 -384 182 174 22 0 chr4 23651540 23651586 -178676761 + GA-rich Low_complexity Low_complexity 3 49 0 1714 226 35 13 chr4 23651707 23651909 -178676438 - Charlie4a DNA MER1_type -1467 494 298 1809 156 35 30 chr4 23651909 23652282 -178676065 - THE1C LTR MaLR 0 375 1 1714 226 35 13 chr4 23652282 23652539 -178675808 - Charlie4a DNA MER1_type -1663 298 25 189 200 89 22 chr4 23652791 23652836 -178675511 + MIR SINE MIR 131 178 -84 347 228 49 74 chr4 23753157 23753319 -178575028 + L1M4 LINE L1 4162 4319 -1827 378 309 109 51 chr4 23753345 23753620 -178574727 + L2 LINE L2 1476 1766 -1548 6122 46 15 2 chr4 23753631 23754434 -178573913 - L1PA7 LINE L1 -1 6153 5341 23 0 0 0 chr4 23754774 23754797 -178573550 + AT_rich Low_complexity Low_complexity 1 23 0 2487 58 0 6 chr4 23755452 23755765 -178572582 - AluY SINE Alu 0 311 1 288 326 109 51 chr4 23756193 23756797 -178571550 - L2 LINE L2 -524 2790 2152 492 102 82 0 chr4 23757444 23757591 -178570756 + (TA)n Simple_repeat Simple_repeat 2 160 0 3366 156 41 11 chr4 23758552 23759510 -178568837 + L1MA5 LINE L1 4682 5651 -646 1732 144 131 31 chr4 23759513 23759895 -178568452 + MSTA LTR MaLR 9 428 0 3429 137 23 20 chr4 23759895 23760537 -178567810 + L1MA5 LINE L1 5647 6290 -10 553 236 13 45 chr4 23760554 23760711 -178567636 - MLT2B1 LTR ERVL -7 513 362 232 330 42 17 chr4 23762783 23762901 -178565446 + L2 LINE L2 2667 2787 -527 657 197 145 15 chr4 23763037 23763306 -178565041 + Zaphod DNA AcHobo 524 827 -3204 1391 242 48 5 chr4 23763439 23763856 -178564491 + Zaphod DNA AcHobo 3596 4030 -1 360 0 0 0 chr4 23764176 23764216 -178564131 + (T)n Simple_repeat Simple_repeat 1 40 0 23 0 0 0 chr4 23764438 23764461 -178563886 + AT_rich Low_complexity Low_complexity 1 23 0 2138 133 3 0 chr4 23764461 23764763 -178563584 - AluSx SINE Alu -9 303 1 23 0 0 0 chr4 23764886 23764909 -178563438 + AT_rich Low_complexity Low_complexity 1 23 0 1881 160 5 54 chr4 23765143 23765530 -178562817 - MLT1B LTR MaLR 0 390 23 3027 176 32 12 chr4 23765618 23766203 -178562144 - MER6A DNA MER2_type 0 605 9 21 36 0 0 chr4 23766287 23766315 -178562032 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr4 23766340 23766361 -178561986 + AT_rich Low_complexity Low_complexity 1 21 0 2004 237 42 15 chr4 23766543 23767087 -178561260 - MLT1F1 LTR MaLR -8 559 1 1377 149 47 139 chr4 23767121 23767523 -178560824 - MLT1A1 LTR MaLR 0 365 1 307 167 30 0 chr4 23767658 23767724 -178560623 + MLT1D LTR MaLR 430 497 -8 512 133 0 0 chr4 23768096 23768171 -178560176 + AluS SINE Alu 221 295 -15 183 42 0 0 chr4 23768441 23768465 -178559882 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 2096 117 7 10 chr4 23768574 23768874 -178559473 - AluSx SINE Alu -13 299 1 189 0 0 0 chr4 23769261 23769282 -178559065 + (TA)n Simple_repeat Simple_repeat 2 22 0 260 246 14 0 chr4 23769408 23769477 -178558870 + (TA)n Simple_repeat Simple_repeat 1 70 0 26 0 0 0 chr4 23769920 23769946 -178558401 + AT_rich Low_complexity Low_complexity 1 26 0 806 204 41 0 chr4 23770534 23770706 -178557641 + L1PB4 LINE L1 5966 6144 -12 2314 90 0 16 chr4 23771226 23771537 -178556810 + AluSg1 SINE Alu 1 306 -3 2177 118 0 31 chr4 23772149 23772470 -178555877 - AluSx SINE Alu -1 311 1 31 76 0 0 chr4 23772536 23772602 -178555745 + AT_rich Low_complexity Low_complexity 1 66 0 225 338 12 25 chr4 23772609 23772689 -178555658 - MIR SINE MIR -107 155 77 2186 205 30 41 chr4 23774526 23775086 -178553261 + MLT2B3 LTR ERVL 1 554 0 338 267 67 0 chr4 23776395 23776485 -178551862 - MER5A DNA MER1_type -5 184 89 247 318 109 9 chr4 23776808 23776918 -178551429 + L2 LINE L2 3147 3267 -5 1857 70 23 0 chr4 23777537 23777794 -178550553 + L1PA13 LINE L1 5901 6163 0 302 339 123 40 chr4 23778340 23778665 -178549682 - L2 LINE L2 -833 2481 2130 2365 90 10 0 chr4 23778686 23778987 -178549360 + AluSp SINE Alu 2 305 -8 1249 299 77 5 chr4 23779180 23779584 -178548763 - MER70A LTR ERVL -36 436 4 1459 228 37 3 chr4 23779694 23780019 -178548328 - MLT1A1 LTR MaLR -2 363 28 1893 157 24 24 chr4 23780028 23780397 -178547950 + THE1C LTR MaLR 7 375 0 8442 128 80 8 chr4 23780398 23781870 -178546477 + THE1C-int LTR MaLR 2 1580 0 2048 147 33 14 chr4 23781870 23782238 -178546109 + THE1C LTR MaLR 1 375 0 969 303 22 25 chr4 23782353 23782720 -178545627 + L2 LINE L2 2183 2548 -766 352 253 11 21 chr4 23782856 23782951 -178545396 + MLT1E LTR MaLR 15 108 -485 1523 205 55 41 chr4 23782955 23783414 -178544933 - L1MA9 LINE L1 -34 6278 5814 1879 175 9 0 chr4 23783430 23783768 -178544579 - L1PB4 LINE L1 -3 6153 5813 1023 90 0 0 chr4 23783775 23783908 -178544439 - AluSp/q SINE Alu -2 311 179 507 141 11 0 chr4 23783912 23784004 -178544343 - L1MA9 LINE L1 -345 5823 5731 1062 285 143 18 chr4 23784004 23784443 -178543904 + MLT1E LTR MaLR 97 590 -3 1260 295 63 25 chr4 23784444 23785079 -178543268 + L2 LINE L2 2654 3313 0 2331 98 0 0 chr4 23786063 23786359 -178541988 + AluSx SINE Alu 1 296 -16 351 351 140 36 chr4 23786485 23786821 -178541526 + L3 LINE CR1 11 381 -1196 374 274 110 71 chr4 23786861 23787083 -178541264 + MIR SINE MIR 3 234 -28 825 283 10 5 chr4 23787811 23788016 -178540331 - MIR SINE MIR -36 226 21 894 233 0 5 chr4 23788042 23788231 -178540116 + MER58A DNA MER1_type 37 224 0 185 62 0 31 chr4 23788498 23788530 -178539817 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 1539 178 7 21 chr4 23788530 23788811 -178539536 - AluJb SINE Alu -35 277 1 522 228 30 46 chr4 23788924 23789121 -178539226 - L1MC5 LINE L1 -42 7919 7726 2249 142 90 56 chr4 23789835 23790384 -178537963 + MER34B LTR ERV1 11 565 0 1939 135 44 0 chr4 23790889 23791185 -178537162 - AluSx SINE Alu -3 309 1 297 258 103 10 chr4 23791497 23791594 -178536753 - MIR SINE MIR -128 134 29 198 0 0 0 chr4 23791890 23791912 -178536435 + (TTG)n Simple_repeat Simple_repeat 3 24 0 2044 140 0 3 chr4 23791914 23792200 -178536147 - AluSx SINE Alu -27 285 1 246 219 0 41 chr4 23795103 23795176 -178533171 + MLT1K LTR MaLR 448 517 -71 315 313 133 0 chr4 23795199 23795327 -178533020 - MIR SINE MIR -64 198 54 269 314 37 95 chr4 23795630 23795926 -178532421 + L2 LINE L2 2690 2968 -346 2099 83 50 0 chr4 23796031 23796309 -178532038 + AluSx SINE Alu 2 293 -19 367 277 25 0 chr4 23797538 23797657 -178530690 - MLT1L LTR MaLR -5 610 489 2155 126 0 7 chr4 23798075 23798368 -178529979 + AluSx SINE Alu 6 296 -16 533 279 104 40 chr4 23798686 23799012 -178529335 + L2 LINE L2 2967 3313 0 185 252 258 38 chr4 23799058 23799217 -178529130 + L2 LINE L2 2155 2348 -966 282 227 30 0 chr4 23799235 23799301 -178529046 + MER5A DNA MER1_type 119 186 -3 208 125 313 0 chr4 23799595 23799643 -178528704 + L2 LINE L2 3206 3268 -4 23 0 0 0 chr4 23799900 23799923 -178528424 + AT_rich Low_complexity Low_complexity 1 23 0 580 260 79 20 chr4 23800314 23800568 -178527779 - LTR16C LTR ERVL -35 456 188 1657 85 0 0 chr4 23800769 23801004 -178527343 + L1PA14 LINE L1 5865 6099 -62 217 238 0 0 chr4 23802123 23802165 -178526182 + (CATA)n Simple_repeat Simple_repeat 3 44 0 1279 123 30 5 chr4 23802703 23802906 -178525441 + MSTA LTR MaLR 217 424 -4 354 184 149 35 chr4 23803069 23803183 -178525164 + MER58B DNA MER1_type 197 323 -18 394 306 32 0 chr4 23804232 23804356 -178523991 - MIR SINE MIR -128 134 7 374 265 43 26 chr4 23804705 23804822 -178523525 + MIR SINE MIR 48 166 -96 607 99 0 0 chr4 23804944 23805035 -178523312 + L1PB1 LINE L1 5883 5973 -178 1534 70 25 0 chr4 23805036 23805237 -178523110 + AluYa5 SINE Alu 1 206 -105 22 0 0 0 chr4 23805650 23805672 -178522675 + AT_rich Low_complexity Low_complexity 1 22 0 353 294 64 9 chr4 23806390 23806499 -178521848 + MIR SINE MIR 31 145 -63 21 0 0 0 chr4 23807362 23807383 -178520964 + AT_rich Low_complexity Low_complexity 1 21 0 244 289 174 27 chr4 23807851 23808000 -178520347 + L1MEd LINE L1 447 617 -5502 2259 117 39 25 chr4 23808060 23808419 -178519928 + THE1B LTR MaLR 1 364 0 7578 91 51 55 chr4 23808419 23809679 -178518668 + THE1B-int LTR MaLR 1 1255 -325 1084 73 20 26 chr4 23809779 23809962 -178518385 + THE1B LTR MaLR 182 353 -11 1362 148 15 15 chr4 23809970 23810233 -178518114 + MER6 DNA MER2_type 603 865 0 475 256 15 91 chr4 23810386 23810585 -178517762 + MER5A DNA MER1_type 1 184 -5 287 152 60 7 chr4 23812326 23812477 -178515870 + (TA)n Simple_repeat Simple_repeat 2 160 0 250 244 26 13 chr4 23812509 23812587 -178515760 - MER103 DNA DNA -65 101 23 24 0 0 0 chr4 23815856 23815880 -178512467 + AT_rich Low_complexity Low_complexity 1 24 0 200 245 38 0 chr4 23816700 23816753 -178511594 - L2 LINE L2 -2 3311 3257 1389 149 36 60 chr4 23816946 23817227 -178511120 + AluSg SINE Alu 25 298 -12 944 234 84 33 chr4 23818005 23818372 -178509975 - MER119 DNA MER1_type 0 583 198 268 177 32 56 chr4 23818984 23819074 -178509273 - L1MA10 LINE L1 -33 6301 6191 529 296 13 40 chr4 23819118 23819344 -178509003 + L1ME LINE L1 880 1099 -5848 401 223 176 31 chr4 23819417 23819610 -178508737 + L1ME LINE L1 1247 1467 -5480 528 220 59 17 chr4 23819610 23819809 -178508538 - MER58 DNA MER1_type 0 2420 2 291 225 88 88 chr4 23819810 23820050 -178508297 + L1ME LINE L1 1398 1707 -5240 24 0 0 0 chr4 23821587 23821611 -178506736 + AT_rich Low_complexity Low_complexity 1 24 0 380 263 53 21 chr4 23821684 23821874 -178506473 + L1ME LINE L1 5627 5822 -299 189 0 0 0 chr4 23822236 23822257 -178506090 + (TTTTTG)n Simple_repeat Simple_repeat 4 24 0 377 215 65 0 chr4 23822306 23822399 -178505948 - L1ME4a LINE L1 -283 5838 5740 1995 111 81 0 chr4 23822500 23822771 -178505576 - AluSq SINE Alu -20 293 1 256 235 0 0 chr4 23823840 23823891 -178504456 + L2 LINE L2 3137 3187 -85 203 188 16 62 chr4 23824863 23824927 -178503420 + GA-rich Low_complexity Low_complexity 5 65 0 26 74 0 0 chr4 23826062 23826116 -178502231 + AT_rich Low_complexity Low_complexity 1 54 0 23 0 0 0 chr4 23826959 23826982 -178501365 + AT_rich Low_complexity Low_complexity 1 23 0 2056 135 3 3 chr4 23827195 23827491 -178500856 + AluSx SINE Alu 1 296 -16 1232 382 10 33 chr4 23827773 23828079 -178500268 + AluSx SINE Alu 1 299 -13 444 231 60 26 chr4 23828222 23828339 -178500008 - L2 LINE L2 0 3313 3193 404 310 9 9 chr4 23828892 23829005 -178499342 + MIR3 SINE MIR 48 160 -48 1728 151 18 18 chr4 23829077 23829361 -178498986 + AluJo SINE Alu 4 287 -25 327 338 44 4 chr4 23829375 23829512 -178498835 - MIR SINE MIR -48 160 18 2196 89 10 3 chr4 23829788 23830080 -178498267 - AluSx SINE Alu -18 294 1 23 0 0 0 chr4 23830080 23830103 -178498244 + AT_rich Low_complexity Low_complexity 1 23 0 195 283 19 0 chr4 23832246 23832299 -178496048 - L2 LINE L2 -14 3299 3246 378 277 45 51 chr4 23832350 23832527 -178495820 - MLT1L LTR MaLR -114 501 326 192 40 0 0 chr4 23832580 23832605 -178495742 + (CA)n Simple_repeat Simple_repeat 1 25 0 417 246 9 9 chr4 23832661 23832775 -178495572 + MER3 DNA MER1_type 17 130 -79 2131 138 0 3 chr4 23832777 23833082 -178495265 + AluSx SINE Alu 1 304 -8 2088 119 0 31 chr4 23833244 23833562 -178494785 + AluSq SINE Alu 2 309 -4 195 261 134 83 chr4 23833608 23833765 -178494582 - MIR3 SINE MIR -41 167 3 1092 203 77 81 chr4 23833836 23834276 -178494071 - MLT1C LTR MaLR 0 467 1 2267 120 0 13 chr4 23834499 23834815 -178493532 + AluSx SINE Alu 1 312 0 372 313 109 30 chr4 23836088 23836481 -178491866 - L2 LINE L2 -1076 2238 1815 194 239 22 0 chr4 23836481 23836527 -178491820 - L2 LINE L2 -1757 1557 1511 1105 183 24 53 chr4 23836533 23836667 -178491680 + LTR32 LTR ERVL 15 140 -331 2772 10 0 0 chr4 23836667 23836971 -178491376 - AluY SINE Alu -7 304 1 1105 183 24 53 chr4 23836971 23837082 -178491265 + LTR32 LTR ERVL 140 253 -218 810 147 25 147 chr4 23837125 23837167 -178491180 + LTR32 LTR ERVL 261 306 -165 2361 87 0 6 chr4 23837167 23837479 -178490868 - AluSg SINE Alu 0 310 1 810 147 25 147 chr4 23837479 23837674 -178490673 + LTR32 LTR ERVL 306 469 -2 2232 105 0 10 chr4 23840451 23840757 -178487590 - AluY SINE Alu -8 303 1 181 0 0 0 chr4 23841138 23841158 -178487189 + (TTTG)n Simple_repeat Simple_repeat 2 172 0 1869 162 0 0 chr4 23841158 23841442 -178486905 - AluSx SINE Alu -28 284 1 2030 124 34 0 chr4 23842047 23842338 -178486009 - AluSx SINE Alu -11 301 1 386 264 88 19 chr4 23842743 23842902 -178485445 - MER5B DNA MER1_type -4 174 5 219 234 195 13 chr4 23844044 23844121 -178484226 + L2 LINE L2 3191 3281 -32 256 349 246 0 chr4 23844647 23844773 -178483574 + L2 LINE L2 3103 3259 -13 180 0 0 0 chr4 23844799 23844819 -178483528 + (T)n Simple_repeat Simple_repeat 1 20 0 1229 234 77 56 chr4 23846495 23847043 -178481304 - MLT2B1 LTR ERVL -8 512 1 351 356 84 0 chr4 23847245 23847436 -178480911 - MIR SINE MIR 0 262 56 1006 158 6 0 chr4 23847599 23847757 -178480590 + MER46A DNA MER2_type 1 159 -77 375 321 51 41 chr4 23848150 23848346 -178480001 + MIR3 SINE MIR 5 202 -6 2459 78 3 0 chr4 23848687 23848993 -178479354 - AluSg SINE Alu -3 307 1 2089 116 10 0 chr4 23848997 23849290 -178479057 - AluSq SINE Alu -17 296 1 1875 132 6 22 chr4 23849350 23849668 -178478679 - AluSq SINE Alu 0 313 1 1039 181 6 0 chr4 23849668 23849828 -178478519 - AluJ SINE Alu -5 297 137 1352 114 283 4 chr4 23849847 23850084 -178478263 - AluSq SINE Alu 0 303 1 617 321 79 4 chr4 23851182 23851422 -178476925 - MIR SINE MIR 0 262 5 681 192 79 98 chr4 23851516 23851705 -178476642 - L1MC5 LINE L1 -640 7321 7139 2402 61 0 3 chr4 23851705 23852000 -178476347 - AluY SINE Alu -17 294 1 681 192 79 98 chr4 23852000 23852127 -178476220 - L1MC5 LINE L1 -822 7139 7011 442 94 341 24 chr4 23852128 23852213 -178476134 + MER44D DNA MER2_type 3 114 -591 578 191 96 0 chr4 23852219 23852334 -178476013 - AluJ SINE Alu -185 127 2 1868 226 27 16 chr4 23852334 23852776 -178475571 + MER44D DNA MER2_type 104 605 0 298 208 39 52 chr4 23853056 23853067 -178475280 - MER5A DNA MER1_type -4 185 175 4271 95 7 35 chr4 23853067 23853406 -178474941 - MER41A LTR ERV1 0 554 236 2464 64 0 7 chr4 23853406 23853704 -178474643 - AluSg SINE Alu -14 296 1 4271 95 7 35 chr4 23853704 23853934 -178474413 - MER41A LTR ERV1 -318 236 1 298 208 39 52 chr4 23853934 23853999 -178474348 - MER5A DNA MER1_type -14 175 110 1694 183 3 10 chr4 23854361 23854656 -178473691 + AluJo SINE Alu 1 293 -19 557 255 57 81 chr4 23854905 23855203 -178473144 + L2 LINE L2 3023 3313 0 1146 179 145 34 chr4 23855605 23855752 -178472595 + MER58D DNA MER1_type 26 155 -2265 2282 186 33 15 chr4 23855752 23856210 -178472137 - MER31B LTR ERV1 0 466 1 1146 179 145 34 chr4 23856210 23856387 -178471960 + MER58D DNA MER1_type 155 386 0 680 183 8 15 chr4 23856693 23856824 -178471523 + MLT1E3 LTR MaLR 495 624 0 315 255 75 0 chr4 23857656 23857750 -178470597 - MER94 DNA DNA -33 101 1 842 202 80 28 chr4 23858135 23858259 -178470088 - L1MB4 LINE L1 -1 6179 6038 2246 130 47 39 chr4 23858259 23858620 -178469727 + THE1B LTR MaLR 1 364 0 842 202 80 28 chr4 23858620 23858708 -178469639 - L1MB4 LINE L1 -142 6038 5956 341 284 71 58 chr4 23859163 23859318 -178469029 - MER5B DNA MER1_type -21 157 1 726 224 177 10 chr4 23859326 23859518 -178468829 - MER58A DNA MER1_type 0 224 1 1851 169 89 13 chr4 23860057 23860370 -178467977 + MER1B DNA MER1_type 1 337 0 317 339 40 16 chr4 23860776 23860900 -178467447 - MIR SINE MIR -125 137 11 270 227 41 52 chr4 23861999 23862096 -178466251 + HAL1 LINE L1 804 899 -1608 1647 147 102 0 chr4 23862272 23862537 -178465810 + AluSx SINE Alu 1 292 -20 302 344 36 36 chr4 23862552 23862747 -178465600 + L1MEd LINE L1 954 1148 -4971 2224 124 0 0 chr4 23863005 23863304 -178465043 - AluSx SINE Alu -13 299 1 278 238 43 108 chr4 23863313 23863498 -178464849 - L1MC4 LINE L1 0 8042 7870 445 275 127 54 chr4 23863530 23863861 -178464486 - HsTC2 DNA Tc2 -1073 825 471 227 146 83 0 chr4 23863834 23863882 -178464465 - HsTC2 DNA Tc2 -1599 299 248 * 570 323 91 36 chr4 23864369 23864753 -178463594 - LTR16B LTR ERVL -20 444 40 273 302 26 35 chr4 23864828 23864944 -178463403 + MIR SINE MIR 56 170 -92 1622 181 0 29 chr4 23864944 23865253 -178463094 - AluJo SINE Alu -12 300 1 588 204 19 0 chr4 23865804 23865907 -178462440 - MER58B DNA MER1_type 0 341 237 839 194 61 15 chr4 23866036 23866232 -178462115 - MER58B DNA MER1_type -106 235 31 870 158 7 0 chr4 23866574 23866713 -178461634 - FRAM SINE Alu -17 159 20 227 276 30 75 chr4 23866751 23866950 -178461397 - L1MB4 LINE L1 -1940 5868 5679 266 235 10 61 chr4 23866970 23867068 -178461279 - L1MB4 LINE L1 -2124 5684 5592 200 59 29 0 chr4 23867078 23867112 -178461235 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 606 207 0 41 chr4 23867114 23867235 -178461112 - FLAM_A SINE Alu -17 116 1 395 219 47 29 chr4 23867330 23867469 -178460878 - L1MB4 LINE L1 -716 5448 5299 6252 55 1 9 chr4 23867485 23868142 -178460205 - L1PA7 LINE L1 -16 6138 5486 2441 76 0 0 chr4 23868142 23868445 -178459902 - AluY SINE Alu -8 303 1 6252 55 1 9 chr4 23868445 23868566 -178459781 - L1PA7 LINE L1 -668 5486 5366 451 240 62 73 chr4 23868835 23869027 -178459320 - MLT1D LTR MaLR -268 237 48 253 269 140 54 chr4 23870220 23870313 -178458034 - MIR3 SINE MIR -25 183 83 2157 132 0 10 chr4 23870660 23870970 -178457377 + AluSq SINE Alu 1 307 -6 342 277 80 11 chr4 23871088 23871276 -178457071 - L1ME4a LINE L1 -216 5905 5705 1291 93 60 0 chr4 23871690 23871872 -178456475 - L1PB1 LINE L1 0 6151 5959 860 88 0 0 chr4 23871872 23871986 -178456361 - AluY SINE Alu -2 309 196 32 26 0 0 chr4 23872028 23872067 -178456280 + GC_rich Low_complexity Low_complexity 1 39 0 25 65 0 0 chr4 23872198 23872244 -178456103 + GC_rich Low_complexity Low_complexity 1 46 0 259 257 7 29 chr4 23872368 23872504 -178455843 + (CCG)n Simple_repeat Simple_repeat 2 134 0 1432 302 138 24 chr4 23873215 23873837 -178454510 - MER115 DNA AcHobo 0 693 1 557 245 92 5 chr4 23873998 23874182 -178454165 + MER3 DNA MER1_type 1 200 -9 17315 125 18 23 chr4 23874413 23874847 -178453500 + Tigger4(Zombi) DNA MER2_type 5 440 -2291 2435 83 0 6 chr4 23874847 23875159 -178453188 + AluSg SINE Alu 1 310 0 17315 125 18 23 chr4 23875159 23876283 -178452064 + Tigger4(Zombi) DNA MER2_type 440 1544 -1187 2330 103 0 3 chr4 23876283 23876583 -178451764 + AluSq SINE Alu 1 299 -14 17315 125 18 23 chr4 23876583 23877730 -178450617 + Tigger4(Zombi) DNA MER2_type 1544 2696 -35 789 238 0 0 chr4 23877730 23877897 -178450450 + FRAM SINE Alu 1 167 0 337 276 19 0 chr4 23878893 23878998 -178449349 + (TATATG)n Simple_repeat Simple_repeat 4 110 0 1167 110 8 12 chr4 23879421 23879701 -178448646 - MER4A LTR ERV1 0 664 261 696 101 0 10 chr4 23879701 23879800 -178448547 - MER4A LTR ERV1 -566 98 1 1601 178 25 4 chr4 23879841 23880122 -178448225 - AluJo SINE Alu -20 292 6 530 174 6 116 chr4 23880131 23880186 -178448161 - MER3 DNA MER1_type -40 122 143 2592 61 0 0 chr4 23880186 23880497 -178447850 - AluY SINE Alu 0 311 1 530 174 6 116 chr4 23880497 23880613 -178447734 - MER3 DNA MER1_type -18 144 17 192 40 0 0 chr4 23880669 23880694 -178447653 + (TG)n Simple_repeat Simple_repeat 1 25 0 473 279 137 39 chr4 23880747 23880980 -178447367 + MLT1L LTR MaLR 326 581 -34 353 279 126 16 chr4 23881667 23881857 -178446490 + L2 LINE L2 3094 3304 -9 501 257 33 26 chr4 23882249 23882401 -178445946 - MIR SINE MIR -8 254 102 2143 117 7 10 chr4 23883252 23883552 -178444795 - AluSx SINE Alu -13 299 1 1942 138 3 28 chr4 23885109 23885429 -178442918 - AluSx SINE Alu 0 312 1 1496 129 0 9 chr4 23886435 23886659 -178441688 - AluSg/x SINE Alu -4 308 87 1306 183 40 37 chr4 23887612 23887885 -178440462 + ORSL DNA AcHobo 2 275 0 184 194 0 0 chr4 23888269 23888305 -178440042 + L2 LINE L2 3278 3313 0 843 265 28 16 chr4 23890693 23890946 -178437401 + MIR SINE MIR 5 260 -2 261 368 26 43 chr4 23890968 23891085 -178437262 + L2 LINE L2 3141 3255 -17 291 325 172 18 chr4 23891792 23891955 -178436392 - MIR SINE MIR -70 192 5 213 65 0 0 chr4 23895236 23895267 -178433080 + (T)n Simple_repeat Simple_repeat 1 31 0 205 236 18 18 chr4 23895471 23895526 -178432821 - MIR SINE MIR -89 119 65 1222 117 122 19 chr4 23895720 23895934 -178432413 - MER46A DNA MER2_type 0 236 1 21 36 0 0 chr4 23896053 23896081 -178432266 + AT_rich Low_complexity Low_complexity 1 28 0 1882 150 0 3 chr4 23896725 23897018 -178431329 - AluJb SINE Alu -12 300 9 314 197 26 0 chr4 23898532 23898608 -178429739 - L1MC4a LINE L1 -1855 5953 5876 801 286 64 4 chr4 23898683 23898917 -178429430 - MIR SINE MIR -8 254 7 1843 251 78 21 chr4 23899248 23900219 -178428128 - L1ME3 LINE L1 -166 5996 4960 2418 76 0 0 chr4 23901051 23901354 -178426993 - AluY SINE Alu -8 303 1 407 155 14 0 chr4 23901499 23901570 -178426777 + MER58 DNA MER1_type 2328 2399 -21 4579 137 46 20 chr4 23901646 23902495 -178425852 + L1MA4 LINE L1 5254 6124 -176 392 169 48 0 chr4 23902520 23902603 -178425744 + L1MA5 LINE L1 6208 6294 -6 1784 173 0 23 chr4 23902780 23903087 -178425260 - AluJo SINE Alu -12 300 1 339 287 93 9 chr4 23903690 23903798 -178424549 + L2 LINE L2 3153 3269 -3 364 222 25 0 chr4 23904420 23904501 -178423846 + MIR SINE MIR 97 179 -83 1733 153 10 32 chr4 23904575 23904888 -178423459 - AluJo SINE Alu -6 306 1 240 390 95 0 chr4 23904965 23905070 -178423277 + L2 LINE L2 3116 3230 -42 201 74 0 0 chr4 23906622 23906649 -178421698 + (TG)n Simple_repeat Simple_repeat 2 28 0 315 316 143 0 chr4 23907514 23907612 -178420735 + MIR SINE MIR 3 114 -148 2444 183 25 2 chr4 23907646 23908133 -178420214 - L1MB1 LINE L1 -13 6155 5658 298 184 0 0 chr4 23908136 23908185 -178420162 + MIR SINE MIR 105 153 -109 852 297 141 31 chr4 23908303 23909112 -178419235 + L1ME LINE L1 4382 5279 -867 750 261 89 37 chr4 23909143 23909596 -178418751 + L1ME LINE L1 5317 5794 -368 285 218 141 0 chr4 23910063 23910141 -178418206 + MIR SINE MIR 172 260 -2 382 341 46 102 chr4 23910307 23910419 -178417928 + L2 LINE L2 2965 3082 -190 2647 97 14 6 chr4 23910419 23910780 -178417567 - THE1B LTR MaLR 0 364 1 382 341 46 102 chr4 23910780 23910899 -178417448 + L2 LINE L2 3082 3175 -97 2104 99 0 0 chr4 23910899 23911171 -178417176 + AluSc SINE Alu 36 307 -2 382 341 46 102 chr4 23911171 23911263 -178417084 + L2 LINE L2 3175 3271 -1 304 267 86 91 chr4 23911729 23911916 -178416431 + MIR3 SINE MIR 4 189 -19 224 371 0 0 chr4 23912265 23912354 -178415993 + MIR3 SINE MIR 111 199 -9 454 303 58 11 chr4 23912493 23912681 -178415666 - MIR SINE MIR -55 207 11 307 326 137 33 chr4 23912706 23912930 -178415417 + MIR SINE MIR 3 247 -15 257 337 151 6 chr4 23914449 23914615 -178413732 - MIR SINE MIR -5 257 68 * 309 374 77 32 chr4 23914611 23914857 -178413490 - MIR SINE MIR 0 262 6 2286 112 0 0 chr4 23915017 23915320 -178413027 + AluSx SINE Alu 1 303 -9 407 250 95 43 chr4 23915893 23916125 -178412222 + MIR SINE MIR 19 262 0 216 296 194 9 chr4 23916284 23916392 -178411955 - L2 LINE L2 -21 3251 3124 193 379 40 23 chr4 23920177 23920351 -178407996 - MIR3 SINE MIR -3 205 29 243 0 0 0 chr4 23920516 23920543 -178407804 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1433 194 15 7 chr4 23920552 23920825 -178407522 - AluJo SINE Alu -37 275 1 182 84 21 95 chr4 23921555 23921650 -178406697 + (TTATA)n Simple_repeat Simple_repeat 4 91 0 3573 109 19 58 chr4 23922643 23923267 -178405080 + MER4A LTR ERV1 1 600 0 4072 68 18 4 chr4 23923268 23923814 -178404533 - MER41A LTR ERV1 0 554 1 12438 98 44 10 chr4 23923814 23926236 -178402111 - MER41A-int LTR ERV1 -2 5944 2660 1863 122 14 0 chr4 23926237 23926525 -178401822 - L1P LINE L1 -3364 2782 2491 * 3201 92 8 0 chr4 23926513 23926994 -178401353 + L1P LINE L1 2786 3270 -2876 7121 96 38 0 chr4 23927094 23928143 -178400204 + L1P LINE L1 3942 5030 -1116 9185 87 69 44 chr4 23928143 23929449 -178398898 - HUERS-P1 LTR ERV1 -2919 3177 1905 253 271 17 0 chr4 23929449 23929508 -178398839 - tRNA-Glu-GAG tRNA tRNA -13 62 3 9185 87 69 44 chr4 23929508 23929726 -178398621 - HUERS-P1 LTR ERV1 -4191 1905 1694 2289 104 0 3 chr4 23929726 23930034 -178398313 - AluSg SINE Alu 0 310 4 9185 87 69 44 chr4 23930034 23930446 -178397901 - HUERS-P1 LTR ERV1 -4402 1694 941 5539 124 54 1 chr4 23930432 23931260 -178397087 - MER41A-int LTR ERV1 -5072 874 3 * 4021 96 4 0 chr4 23931349 23931899 -178396448 - MER41A LTR ERV1 -2 552 1 728 239 13 13 chr4 23932262 23932421 -178395926 - MLT1J2 LTR MaLR -254 196 38 1403 228 134 93 chr4 23932677 23933430 -178394917 - LTR1B LTR ERV1 -42 784 1 686 163 23 47 chr4 23933431 23933603 -178394744 - L1 LINE L1 -1586 4560 4393 950 259 137 21 chr4 23933838 23934832 -178393515 - L1ME3 LINE L1 -14 6148 4961 4222 206 70 12 chr4 23934839 23934951 -178393396 - L1 LINE L1 -1351 4795 4691 1658 192 20 47 chr4 23934951 23935352 -178392995 - MLT1B LTR MaLR 0 390 1 4222 206 70 12 chr4 23935352 23936261 -178392086 - L1 LINE L1 -1455 4691 3714 1526 280 80 22 chr4 23936280 23937214 -178391133 - L1ME3 LINE L1 -2115 4031 3035 387 0 0 0 chr4 23937214 23937257 -178391090 + (TA)n Simple_repeat Simple_repeat 1 43 0 1526 280 80 22 chr4 23937257 23937316 -178391031 - L1ME3 LINE L1 -3111 3035 2981 216 0 0 0 chr4 23937413 23937436 -178390911 + (TG)n Simple_repeat Simple_repeat 1 47 0 216 0 0 0 chr4 23937436 23937460 -178390887 + (TG)n Simple_repeat Simple_repeat 2 25 0 1714 180 0 3 chr4 23937484 23937767 -178390580 - AluJo SINE Alu -24 288 7 304 308 60 0 chr4 23938249 23938382 -178389965 + L1MEd LINE L1 228 368 -5751 977 168 67 10 chr4 23938890 23939099 -178389248 - L1P LINE L1 -3682 2464 2244 1767 169 203 17 chr4 23940367 23940786 -178387561 + MLT1D LTR MaLR 1 497 -8 1237 141 60 136 chr4 23941295 23941714 -178386633 + MLT1B LTR MaLR 4 390 0 207 220 0 0 chr4 23941763 23941813 -178386534 + CT-rich Low_complexity Low_complexity 3 52 0 262 278 0 0 chr4 23941977 23942039 -178386308 + MLT1I LTR MaLR 83 144 -265 702 267 187 30 chr4 23942039 23942402 -178385945 - MLT1H LTR MaLR 0 549 130 2088 105 39 20 chr4 23942511 23942949 -178385398 - L1P4 LINE L1 -569 5597 5152 7496 125 22 37 chr4 23942949 23944674 -178383673 - L1P3 LINE L1 -4480 1666 12 297 293 0 0 chr4 23945071 23945170 -178383177 - L1PA12 LINE L1 -5399 2182 2084 759 332 32 45 chr4 23945255 23945873 -178382474 - L1PA12 LINE L1 -6177 1397 788 1347 282 88 49 chr4 23945876 23946624 -178381723 - L1MEc LINE L1 -3053 3162 2394 2144 123 10 3 chr4 23946624 23946926 -178381421 - AluSc SINE Alu -5 304 1 1347 282 88 49 chr4 23946926 23947302 -178381045 - L1MEc LINE L1 -3821 2394 2034 4628 101 55 1 chr4 23947307 23948033 -178380314 - L1PA14 LINE L1 -1 6160 5396 4407 191 18 8 chr4 23948030 23951236 -178377111 - L1PA12 LINE L1 -3549 4035 201 * 340 200 0 0 chr4 23951247 23951312 -178377035 - L1PA12 LINE L1 -7516 65 1 1349 302 88 54 chr4 23951329 23952074 -178376273 - L1MEc LINE L1 -4376 2020 1302 1544 203 58 0 chr4 23952074 23952369 -178375978 - AluJb SINE Alu 0 312 1 1349 302 88 54 chr4 23952369 23952666 -178375681 - L1MEc LINE L1 -5094 1302 1017 518 183 0 10 chr4 23952666 23952770 -178375577 - U13 snRNA snRNA -1 103 1 1349 302 88 54 chr4 23952770 23952792 -178375555 - L1MEc LINE L1 -5379 1017 997 2007 134 7 7 chr4 23952792 23953082 -178375265 - AluSx SINE Alu -22 290 1 1349 302 88 54 chr4 23953082 23953913 -178374434 - L1MEc LINE L1 -5399 997 58 2582 157 7 5 chr4 23955472 23955899 -178372448 - MSTA LTR MaLR 0 428 1 341 288 96 59 chr4 23956246 23956517 -178371830 + MLT1H LTR MaLR 78 358 -191 230 259 12 35 chr4 23957075 23957160 -178371187 + MLT1J LTR MaLR 380 462 -49 203 373 85 0 chr4 23957537 23957655 -178370692 - L2 LINE L2 -4 3309 3182 23 54 0 0 chr4 23958275 23958312 -178370035 + AT_rich Low_complexity Low_complexity 1 37 0 198 264 0 19 chr4 23958430 23958483 -178369864 - L2 LINE L2 -5 3267 3216 1392 217 46 73 chr4 23958670 23959150 -178369197 - MLT1C LTR MaLR 0 467 1 333 277 18 27 chr4 23959403 23959515 -178368832 + MIR SINE MIR 97 207 -55 183 367 58 36 chr4 23959844 23959983 -178368364 + L3 LINE CR1 57 198 -1379 1187 42 0 0 chr4 23960067 23960211 -178368136 - L1PA7 LINE L1 -3 6151 6008 228 67 0 0 chr4 23960215 23960245 -178368102 + (TA)n Simple_repeat Simple_repeat 2 31 0 6094 100 28 1 chr4 23960245 23961154 -178367193 - HERVL-A2 LTR ERVL -4080 1574 642 3066 111 6 8 chr4 23961254 23961733 -178366614 - HERVL-A2 LTR ERVL -5176 478 1 303 164 0 0 chr4 23961733 23961788 -178366559 - MLT2A2 LTR ERVL 0 453 399 297 0 0 0 chr4 23961828 23961861 -178366486 + (TG)n Simple_repeat Simple_repeat 2 34 0 2313 120 2 40 chr4 23961902 23962302 -178366045 + Tigger2 DNA MER2_type 2334 2718 0 322 104 0 0 chr4 23962303 23962351 -178365996 + MLT1H LTR MaLR 326 373 -17 4428 65 41 5 chr4 23962351 23962940 -178365407 + LTR66 LTR ERVL 1 610 0 7669 90 33 0 chr4 23962940 23964034 -178364313 + HERVL66 LTR ERVL 1 1130 -3199 2451 89 40 0 chr4 23964034 23964382 -178363965 + HERVL66 LTR ERVL 1436 1797 -2532 * 4535 111 31 7 chr4 23964363 23965045 -178363302 + HERVL66 LTR ERVL 2655 3352 -977 2634 140 12 2 chr4 23965043 23965471 -178362876 + HERVL66 LTR ERVL 3569 4000 -329 * 2286 38 0 0 chr4 23965471 23965762 -178362585 - L1PA5 LINE L1 -888 5258 4968 7092 45 15 0 chr4 23965762 23966632 -178361715 + L1PA5 LINE L1 5269 6153 -1 914 86 91 3 chr4 23966651 23966888 -178361459 + HERVL66 LTR ERVL 3988 4329 0 4582 66 34 0 chr4 23966888 23967478 -178360869 + LTR66 LTR ERVL 1 610 0 286 324 43 53 chr4 23967624 23967831 -178360516 + L3 LINE CR1 1343 1547 -30 6382 128 29 29 chr4 23967895 23969004 -178359343 - Tigger3b DNA MER2_type -1797 1231 122 1956 159 130 16 chr4 23969004 23969388 -178358959 - MSTA LTR MaLR 0 428 1 6382 128 29 29 chr4 23969388 23969467 -178358880 - Tigger3b DNA MER2_type -2906 122 44 2047 176 24 52 chr4 23969467 23970001 -178358346 - LTR27 LTR ERV1 0 501 12 301 158 50 45 chr4 23970057 23970141 -178358206 - L1MD3 LINE L1 -29 7963 7676 275 245 0 0 chr4 23970274 23970327 -178358020 - AluJ/monomer SINE Alu -246 53 1 193 171 24 24 chr4 23972467 23972508 -178355839 - MER5A DNA MER1_type -22 167 127 2543 144 2 0 chr4 23972508 23972911 -178355436 + L1PA16 LINE L1 5760 6163 -3 321 100 0 0 chr4 23972952 23973002 -178355345 + (CA)n Simple_repeat Simple_repeat 1 50 0 346 308 33 17 chr4 23973017 23973137 -178355210 + MER5A DNA MER1_type 68 189 0 674 289 71 42 chr4 23973838 23974077 -178354270 + MIR SINE MIR 3 248 -14 1796 188 0 3 chr4 23974904 23975196 -178353151 - AluJb SINE Alu -21 291 1 496 316 113 1 chr4 23975731 23975936 -178352411 - MIR SINE MIR -1 261 36 628 314 28 48 chr4 23976320 23976673 -178351674 + LTR16A1 LTR ERVL 107 452 -5 1432 169 157 27 chr4 23977736 23978175 -178350172 + LTR54B LTR ERV1 1 496 -2 901 239 50 5 chr4 23978712 23978913 -178349434 - MIR SINE MIR -27 235 26 2711 81 17 0 chr4 23978973 23979331 -178349016 - THE1B LTR MaLR 0 364 1 644 273 104 7 chr4 23979466 23979755 -178348592 - MLT1K LTR MaLR -33 555 239 433 138 88 0 chr4 23979958 23980038 -178348309 + MLT1A2 LTR MaLR 288 374 0 299 278 50 0 chr4 23980441 23980589 -178347758 + L1M4 LINE L1 3864 4018 -2128 557 240 120 20 chr4 23980826 23981076 -178347271 - MER110A LTR ERV1 -23 445 171 1631 197 3 10 chr4 23981419 23981718 -178346629 + AluJo SINE Alu 1 297 -15 2124 124 0 0 chr4 23982143 23982453 -178345894 - AluSg SINE Alu 0 310 1 1099 210 89 46 chr4 23983045 23983393 -178344954 - MLT1A1 LTR MaLR -2 363 1 1286 133 0 10 chr4 23983756 23983951 -178344396 + AluSg/x SINE Alu 119 311 -1 533 161 42 17 chr4 23984759 23984877 -178343470 - MER31-int LTR ERV1 -3902 1034 914 848 218 66 73 chr4 23985507 23985810 -178342537 + MER58B DNA MER1_type 40 340 -1 594 331 112 60 chr4 23986544 23986658 -178341689 + L2 LINE L2 2011 2118 -1196 2090 126 33 0 chr4 23986658 23986959 -178341388 + AluSx SINE Alu 1 311 -1 594 331 112 60 chr4 23986959 23987565 -178340782 + L2 LINE L2 2118 2790 -524 2353 99 0 3 chr4 23987565 23987869 -178340478 - AluSx SINE Alu -9 303 1 594 331 112 60 chr4 23987869 23988058 -178340289 + L2 LINE L2 2790 2968 -346 727 39 19 0 chr4 23988986 23989089 -178339258 + (TCTA)n Simple_repeat Simple_repeat 2 106 0 1987 137 8 48 chr4 23989546 23989919 -178338428 - MER34B LTR ERV1 -207 358 1 444 255 10 75 chr4 23991360 23991560 -178336787 - L2 LINE L2 0 3313 3127 434 69 0 42 chr4 23991720 23991792 -178336555 + L1MC2 LINE L1 6265 6333 -11 313 179 26 26 chr4 23991944 23992022 -178336325 + MLT1J LTR MaLR 416 493 -18 218 225 0 0 chr4 23993654 23993694 -178334653 + L2 LINE L2 3021 3060 -253 23889 29 1 3 chr4 23993853 23997333 -178331014 - L1PA3 LINE L1 -3 6152 2679 2053 140 0 19 chr4 23997337 23997651 -178330696 - AluSx SINE Alu -4 308 1 423 233 8 54 chr4 23997718 23997847 -178330500 + L2 LINE L2 3191 3313 0 344 239 0 0 chr4 23998448 23998519 -178329828 + L2 LINE L2 3242 3312 -1 282 125 0 0 chr4 23998548 23998596 -178329751 + (TG)n Simple_repeat Simple_repeat 2 49 0 266 222 111 65 chr4 23998812 23998920 -178329427 + MIR SINE MIR 131 243 -19 948 144 17 46 chr4 23999553 23999726 -178328621 - THE1B LTR MaLR 0 364 197 351 25 0 0 chr4 23999721 23999761 -178328586 - THE1B LTR MaLR -324 40 1 * 11855 105 17 2 chr4 23999761 24001318 -178327029 - THE1B-int LTR MaLR 0 1580 1 2400 131 13 40 chr4 24001318 24001692 -178326655 - THE1B LTR MaLR 0 364 1 566 308 73 49 chr4 24002047 24002294 -178326053 - MIR SINE MIR -1 261 9 459 308 157 48 chr4 24003001 24003504 -178324843 - L2 LINE L2 -337 2977 2420 240 351 21 0 chr4 24004029 24004123 -178324224 + L2 LINE L2 3208 3303 -10 22 0 0 0 chr4 24004192 24004214 -178324133 + AT_rich Low_complexity Low_complexity 1 22 0 245 308 26 68 chr4 24004589 24004706 -178323641 + MIR SINE MIR 21 132 -76 356 361 77 52 chr4 24005086 24005452 -178322895 - L2 LINE L2 -8 3264 2890 219 346 10 10 chr4 24005629 24005733 -178322614 - L2 LINE L2 -279 2993 2890 371 325 31 31 chr4 24006215 24006409 -178321938 + MIR SINE MIR 57 250 -12 1997 116 0 11 chr4 24007647 24007967 -178320380 + AluSx SINE Alu 1 317 0 3407 65 8 5 chr4 24008562 24009057 -178319290 - L1P3 LINE L1 -477 5695 5200 677 294 21 61 chr4 24009354 24009680 -178318667 - L2 LINE L2 0 3313 3001 189 176 149 54 chr4 24010650 24010724 -178317623 + L3 LINE CR1 591 671 -906 378 42 0 0 chr4 24010761 24010809 -178317538 + (TG)n Simple_repeat Simple_repeat 1 48 0 248 348 18 9 chr4 24011024 24011136 -178317211 + MIR SINE MIR 80 192 -70 1315 262 95 46 chr4 24011473 24011947 -178316400 + MLT1D LTR MaLR 5 501 -4 185 292 97 35 chr4 24012843 24012956 -178315391 - MIR SINE MIR -31 231 112 396 347 61 52 chr4 24012974 24013073 -178315274 + L2 LINE L2 2842 2939 -333 841 247 27 45 chr4 24013073 24013296 -178315051 + MER20 DNA MER1_type 1 219 0 396 347 61 52 chr4 24013296 24013622 -178314725 + L2 LINE L2 2939 3271 -1 8623 136 11 4 chr4 24013719 24015957 -178312390 + L1PA11 LINE L1 3879 6133 -41 240 35 0 0 chr4 24015973 24016002 -178312345 + (CA)n Simple_repeat Simple_repeat 2 30 0 410 216 0 144 chr4 24017629 24017782 -178310565 + MER69 DNA AcHobo 5 135 -2391 377 171 24 49 chr4 24017782 24017864 -178310483 + MER69 DNA AcHobo 2447 2526 0 21 0 0 0 chr4 24017874 24017895 -178310452 + AT_rich Low_complexity Low_complexity 1 21 0 1742 232 52 52 chr4 24017895 24018400 -178309947 + MLT1D LTR MaLR 1 505 0 755 286 98 47 chr4 24018645 24019673 -178308674 - L1M4 LINE L1 -1544 4602 3522 2702 87 50 8 chr4 24019979 24020336 -178308011 - THE1C LTR MaLR 0 375 4 10708 120 48 4 chr4 24020339 24021852 -178306495 - THE1C-int LTR MaLR 0 1580 1 1816 82 9 0 chr4 24021852 24022083 -178306264 - THE1C LTR MaLR 0 375 143 267 213 62 12 chr4 24023666 24023746 -178304601 - MER41C LTR ERV1 -470 84 1 186 163 70 23 chr4 24023767 24023810 -178304537 - MER5A DNA MER1_type -35 154 110 1694 183 3 10 chr4 24024172 24024467 -178303880 + AluJo SINE Alu 1 293 -19 193 314 58 22 chr4 24024824 24024961 -178303386 + L2 LINE L2 3116 3257 -56 22 0 0 0 chr4 24025227 24025249 -178303098 + GC_rich Low_complexity Low_complexity 1 22 0 402 273 16 16 chr4 24026981 24027102 -178301245 + FRAM SINE Alu 41 161 -15 1876 132 6 22 chr4 24027102 24027420 -178300927 + AluSq SINE Alu 1 313 0 2370 89 0 10 chr4 24027480 24027794 -178300553 + AluSx SINE Alu 1 311 -1 208 274 0 32 chr4 24079836 24079898 -178248449 - MIR SINE MIR -28 234 175 4379 35 17 0 chr4 24080506 24080988 -178247359 - LTR2B LTR ERV1 0 490 1 24681 114 9 12 chr4 24080988 24084556 -178243791 - Harlequin LTR ERV1 0 6896 3342 3296 82 25 23 chr4 24084551 24085245 -178243102 - Harlequin LTR ERV1 -2313 3273 1572 * 4890 61 8 14 chr4 24085239 24085874 -178242473 - Harlequin LTR ERV1 -6004 892 262 2531 114 5 0 chr4 24085869 24086247 -178242100 - Harlequin LTR ERV1 -6516 380 1 * 4296 35 21 0 chr4 24086247 24086726 -178241621 - LTR2B LTR ERV1 0 490 2 820 251 33 5 chr4 24086739 24086954 -178241393 + LTR16C LTR ERVL 254 474 -17 5477 131 42 47 chr4 24087235 24088209 -178240138 + LTR5 LTR ERVK 1 969 0 516 133 0 0 chr4 24088246 24088329 -178240018 + (CA)n Simple_repeat Simple_repeat 2 84 0 201 385 37 9 chr4 24088870 24088979 -178239368 + MIR SINE MIR 29 140 -68 200 350 0 10 chr4 24089489 24089592 -178238755 + T-rich Low_complexity Low_complexity 3 104 0 555 308 6 6 chr4 24089815 24089987 -178238360 - MIR SINE MIR -90 172 1 335 244 130 16 chr4 24090068 24090191 -178238156 + MIR3 SINE MIR 9 145 -63 329 277 90 58 chr4 24090478 24090633 -178237714 + L2 LINE L2 3108 3267 -5 183 296 34 23 chr4 24091089 24091177 -178237170 + L2 LINE L2 2269 2357 -957 2048 147 3 3 chr4 24092961 24093273 -178235074 + AluSx SINE Alu 1 312 0 219 69 0 0 chr4 24094117 24094146 -178234201 + (CA)n Simple_repeat Simple_repeat 2 30 0 2353 179 4 21 chr4 24095439 24095453 -178232894 - L1 LINE L1 -757 5389 5376 845 168 24 0 chr4 24095453 24095620 -178232727 - L1MA8 LINE L1 -2 6289 6119 2353 179 4 21 chr4 24095620 24096125 -178232222 - L1 LINE L1 -770 5376 4879 1539 204 99 13 chr4 24096175 24096799 -178231548 - SATR1 Satellite Satellite -95 677 1 1975 213 107 7 chr4 24096829 24097472 -178230875 - SATR1 Satellite Satellite -1 707 1 405 168 0 67 chr4 24097479 24097658 -178230689 + (TTA)n Simple_repeat Simple_repeat 1 167 0 270 272 11 33 chr4 24097693 24097877 -178230470 + (TTA)n Simple_repeat Simple_repeat 1 180 0 2137 183 97 13 chr4 24097904 24100369 -178227978 + SATR1 Satellite Satellite 1 2670 -99 2456 182 23 8 chr4 24100569 24101047 -178227300 - MER31A LTR ERV1 0 485 1 2156 103 3 3 chr4 24101578 24101868 -178226479 + AluSq SINE Alu 12 301 -12 2375 159 14 30 chr4 24102793 24103234 -178225113 - Tigger2a DNA MER2_type 0 434 1 2429 204 40 72 chr4 24103319 24104130 -178224217 - LTR1 LTR ERV1 0 785 1 2177 121 7 0 chr4 24104148 24104454 -178223893 + AluSx SINE Alu 1 308 -4 7482 31 0 0 chr4 24105080 24106063 -178222284 - L1PA5 LINE L1 0 6154 5163 223 108 43 43 chr4 24106530 24106623 -178221724 + (TA)n Simple_repeat Simple_repeat 1 93 0 361 236 40 11 chr4 24106670 24106831 -178221516 + (TA)n Simple_repeat Simple_repeat 2 170 -10 480 108 0 36 chr4 24106831 24106914 -178221433 + MADE1 DNA Mariner 1 80 0 361 236 40 11 chr4 24106914 24106926 -178221421 + (TA)n Simple_repeat Simple_repeat 170 180 0 497 257 99 0 chr4 24107202 24107373 -178220974 - L1MC4 LINE L1 -1040 7002 6815 218 197 45 0 chr4 24108051 24108117 -178220230 + (TA)n Simple_repeat Simple_repeat 2 70 0 4282 158 22 38 chr4 24108623 24108674 -178219673 - L1MB3 LINE L1 -1 6182 6132 2191 138 3 0 chr4 24108674 24108985 -178219362 - AluSx SINE Alu 0 312 1 4282 158 22 38 chr4 24108985 24109820 -178218527 - L1MB3 LINE L1 -51 6132 5308 1195 244 77 6 chr4 24110341 24110549 -178217798 - MLT1B LTR MaLR 0 390 198 426 20 0 0 chr4 24110549 24110600 -178217747 + (TC)n Simple_repeat Simple_repeat 2 52 0 1195 244 77 6 chr4 24110600 24110755 -178217592 - MLT1B LTR MaLR -192 198 1 218 303 131 10 chr4 24111357 24111456 -178216891 + L2 LINE L2 3158 3268 -4 321 238 50 0 chr4 24112035 24112115 -178216232 - MIR SINE MIR -71 191 108 1783 228 2 0 chr4 24112851 24113285 -178215062 - L1MB3 LINE L1 -2092 4054 3620 859 285 131 65 chr4 24114251 24114710 -178213637 + L2 LINE L2 2820 3308 -5 654 296 57 4 chr4 24114727 24114957 -178213390 - MIR SINE MIR -1 261 20 1199 202 34 43 chr4 24118289 24118616 -178209731 + MER33 DNA MER1_type 1 324 0 2163 123 123 5 chr4 24118708 24119091 -178209256 + MSTA LTR MaLR 1 428 0 212 330 103 10 chr4 24119271 24119368 -178208979 + MIR SINE MIR 74 179 -83 231 227 45 15 chr4 24119429 24119495 -178208852 - MIR SINE MIR -24 238 171 394 323 41 50 chr4 24119533 24119753 -178208594 - MIR SINE MIR -31 231 14 387 252 37 9 chr4 24120207 24120314 -178208033 - MIR3 SINE MIR -2 206 97 1519 186 90 29 chr4 24120741 24121085 -178207262 - MLT1A1 LTR MaLR 0 365 1 22 88 0 0 chr4 24122026 24122083 -178206264 + AT_rich Low_complexity Low_complexity 1 57 0 861 207 31 47 chr4 24123092 24123285 -178205062 + MIR SINE MIR 49 238 -24 663 307 40 9 chr4 24123247 24123475 -178204872 - MIR SINE MIR -16 246 12 * 2429 76 0 0 chr4 24123623 24123927 -178204420 + AluSc SINE Alu 1 304 -5 189 276 11 46 chr4 24125233 24125320 -178203027 + L2 LINE L2 2301 2384 -930 503 174 18 0 chr4 24125320 24125429 -178202918 + MLT1C LTR MaLR 199 309 -158 858 218 52 65 chr4 24125430 24125737 -178202610 - MLT1A1 LTR MaLR 0 365 63 1435 81 187 8 chr4 24125737 24126010 -178202337 + AluSg1 SINE Alu 3 317 0 828 167 19 25 chr4 24126060 24126222 -178202125 + MLT1C LTR MaLR 307 467 0 305 360 85 9 chr4 24126233 24126323 -178202024 + L2 LINE L2 2392 2474 -840 411 21 0 0 chr4 24126323 24126371 -178201976 + (CA)n Simple_repeat Simple_repeat 2 49 0 305 360 85 9 chr4 24126371 24126491 -178201856 + L2 LINE L2 2474 2618 -696 612 319 48 42 chr4 24126513 24126894 -178201453 + L2 LINE L2 2724 3105 -208 355 319 34 17 chr4 24126942 24127061 -178201286 - L2 LINE L2 -15 3257 3137 488 302 6 19 chr4 24127090 24127249 -178201098 + L2 LINE L2 3156 3312 -1 980 278 141 16 chr4 24127951 24128445 -178199902 + MLT1F1 LTR MaLR 3 556 -11 184 279 115 77 chr4 24128834 24128938 -178199409 + MIR SINE MIR 38 145 -63 42092 39 1 0 chr4 24129664 24135811 -178192536 + L1PA4 LINE L1 2 6155 0 305 349 115 0 chr4 24136545 24136754 -178191593 + LTR33 LTR ERVL 7 239 -282 1045 230 72 24 chr4 24136777 24137112 -178191235 - L1ME2 LINE L1 -20 6144 5794 304 278 87 0 chr4 24137180 24137295 -178191052 + LTR33 LTR ERVL 393 517 -4 1051 205 151 51 chr4 24137377 24137709 -178190638 - MLT1A1 LTR MaLR 0 365 1 474 209 134 59 chr4 24137898 24138204 -178190143 - L1ME4a LINE L1 -2 6119 5791 22 0 0 0 chr4 24139557 24139579 -178188768 + AT_rich Low_complexity Low_complexity 1 22 0 2233 119 39 30 chr4 24139593 24139954 -178188393 - THE1B LTR MaLR 0 364 1 23 0 0 0 chr4 24139955 24139978 -178188369 + AT_rich Low_complexity Low_complexity 1 23 0 264 317 30 0 chr4 24140035 24140136 -178188211 - MIR3 SINE MIR 0 208 105 238 302 0 62 chr4 24140918 24141014 -178187333 + MIR3 SINE MIR 84 154 -54 226 250 52 73 chr4 24141457 24141553 -178186794 - MIR SINE MIR -13 249 156 222 386 43 57 chr4 24142140 24142350 -178185997 - L2 LINE L2 -42 3230 3024 732 280 57 5 chr4 24144760 24145007 -178183340 + MIR SINE MIR 4 261 -1 917 280 137 55 chr4 24145024 24145712 -178182635 - L2 LINE L2 -5 3308 2542 447 237 111 18 chr4 24145868 24146063 -178182284 + MIR3 SINE MIR 1 211 -51 719 248 52 97 chr4 24146234 24146607 -178181740 - MLT1C LTR MaLR -67 400 45 1538 149 126 0 chr4 24146607 24146868 -178181479 + AluJb SINE Alu 1 294 -8 719 248 52 97 chr4 24146868 24146897 -178181450 - MLT1C LTR MaLR -422 45 16 186 384 68 0 chr4 24148031 24148104 -178180243 + L2 LINE L2 3109 3186 -86 213 298 18 0 chr4 24148195 24148252 -178180095 - L2 LINE L2 -221 3051 2994 250 253 13 13 chr4 24148404 24148483 -178179864 - LTR33A LTR ERVL -1 522 444 2405 48 41 0 chr4 24149377 24149672 -178178675 - AluY SINE Alu -4 307 1 211 322 0 0 chr4 24149825 24149915 -178178432 + (TAA)n Simple_repeat Simple_repeat 1 90 0 488 208 0 21 chr4 24150101 24150197 -178178150 + MIR SINE MIR 59 152 -110 792 131 66 0 chr4 24150236 24150358 -178177989 + FLAM_C SINE Alu 3 132 -1 251 54 27 0 chr4 24150419 24150456 -178177891 + (TC)n Simple_repeat Simple_repeat 1 38 0 225 128 43 0 chr4 24150525 24150572 -178177775 + L2 LINE L2 3265 3313 0 780 243 66 21 chr4 24152303 24152685 -178175662 - LTR50 LTR ERVL -344 451 2 257 122 0 0 chr4 24152931 24152972 -178175375 + AluSc SINE Alu 249 289 -10 465 300 19 71 chr4 24152990 24153055 -178175292 + MIR SINE MIR 47 114 -148 2263 102 0 7 chr4 24153055 24153359 -178174988 - AluSq SINE Alu -11 302 1 465 300 19 71 chr4 24153359 24153503 -178174844 + MIR SINE MIR 114 245 -17 998 264 88 6 chr4 24153559 24153889 -178174458 + MLT1J LTR MaLR 1 357 -154 213 211 0 0 chr4 24153989 24154027 -178174320 - L2 LINE L2 -84 3229 3192 249 265 140 37 chr4 24154054 24154190 -178174157 - MLT1L LTR MaLR 0 615 466 243 191 0 0 chr4 24154232 24154279 -178174068 - MLT1L LTR MaLR -224 391 345 578 124 0 48 chr4 24154279 24154384 -178173963 + MSTA LTR MaLR 1 100 -328 2032 157 29 39 chr4 24154391 24154950 -178173397 - MLT2A2 LTR ERVL -3 551 1 1224 144 115 43 chr4 24154960 24155238 -178173109 + MSTA LTR MaLR 131 428 0 234 0 0 0 chr4 24155546 24155572 -178172775 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 2289 57 7 3 chr4 24155576 24155859 -178172488 - AluY SINE Alu -27 284 1 309 308 5 120 chr4 24156869 24156999 -178171348 - MER5A DNA MER1_type -5 184 85 2247 73 0 53 chr4 24156999 24157302 -178171045 - AluY SINE Alu -24 287 1 309 308 5 120 chr4 24157302 24157379 -178170968 - MER5A DNA MER1_type -104 85 1 2635 91 11 0 chr4 24157627 24157978 -178170369 - THE1A LTR MaLR 0 355 1 247 297 11 11 chr4 24158467 24158558 -178169789 + GA-rich Low_complexity Low_complexity 1 91 0 1998 142 0 25 chr4 24159563 24159880 -178168467 - AluSx SINE Alu -3 309 1 522 303 0 37 chr4 24160569 24160757 -178167590 + MIR SINE MIR 82 262 0 333 0 0 0 chr4 24162213 24162250 -178166097 + (CA)n Simple_repeat Simple_repeat 1 37 0 23 0 0 0 chr4 24162386 24162409 -178165938 + AT_rich Low_complexity Low_complexity 1 23 0 273 266 151 7 chr4 24162418 24162557 -178165790 - L1ME4a LINE L1 -3 6118 5960 249 266 202 9 chr4 24162679 24162788 -178165559 + L2 LINE L2 3184 3313 0 305 311 60 33 chr4 24163378 24163561 -178164786 - L1ME4a LINE L1 -267 5854 5667 336 298 71 15 chr4 24163578 24163776 -178164571 - L1ME4a LINE L1 -507 5614 5406 241 327 103 9 chr4 24163974 24164081 -178164266 - L2 LINE L2 -8 3305 3189 544 267 93 13 chr4 24164357 24164590 -178163757 + MIR SINE MIR 6 253 -9 357 82 0 0 chr4 24165444 24165493 -178162854 + (TC)n Simple_repeat Simple_repeat 1 49 0 575 192 30 84 chr4 24166006 24166209 -178162138 + L1PBa LINE L1 3 194 -6669 12392 117 97 4 chr4 24166215 24168869 -178159478 + L1PBa LINE L1 636 3538 -3324 352 96 19 0 chr4 24168877 24168929 -178159418 - MER4A LTR ERV1 -351 313 261 565 141 0 10 chr4 24168929 24169028 -178159319 - MER4A LTR ERV1 -566 98 1 203 250 0 0 chr4 24171273 24171313 -178157034 + polypyrimidine Low_complexity Low_complexity 1 40 0 211 309 221 49 chr4 24171457 24171661 -178156686 - L2 LINE L2 -250 3063 2825 2218 91 0 23 chr4 24172737 24173046 -178155301 + AluSq SINE Alu 1 302 -11 327 301 39 10 chr4 24173199 24173302 -178155045 + MIR SINE MIR 43 148 -60 1155 289 25 17 chr4 24173308 24173665 -178154682 + MER69 DNA AcHobo 276 635 -591 593 197 86 45 chr4 24173651 24173895 -178154452 - MER69 DNA AcHobo -788 1738 1485 * 466 300 74 26 chr4 24174277 24174467 -178153880 + MIR3 SINE MIR 5 203 -5 255 140 0 0 chr4 24175471 24175521 -178152826 + (GA)n Simple_repeat Simple_repeat 1 50 0 266 232 0 0 chr4 24175592 24175648 -178152699 - L2 LINE L2 -1 3271 3216 239 296 112 20 chr4 24175676 24175774 -178152573 + L2 LINE L2 3161 3267 -5 375 149 201 30 chr4 24175970 24176104 -178152243 + MER103 DNA DNA 3 159 -7 313 328 25 25 chr4 24176231 24176353 -178151994 - L3 LINE CR1 -113 1464 1343 562 264 124 6 chr4 24176362 24176540 -178151807 + MER58C DNA MER1_type 1 199 -16 2084 157 0 0 chr4 24176639 24176945 -178151402 + AluSx SINE Alu 1 306 -6 252 222 0 0 chr4 24176956 24177010 -178151337 + MLT1F1 LTR MaLR 39 92 -501 330 185 0 0 chr4 24177021 24177102 -178151245 + (CATCC)n Simple_repeat Simple_repeat 3 83 0 1160 225 79 98 chr4 24177127 24177598 -178150749 + MLT1F1 LTR MaLR 106 567 0 240 35 0 0 chr4 24177673 24177702 -178150645 + (TA)n Simple_repeat Simple_repeat 1 29 0 1838 174 73 13 chr4 24177776 24178225 -178150122 - L1MA9 LINE L1 0 6312 5837 2122 151 21 0 chr4 24178232 24178615 -178149732 - L1MA9 LINE L1 -653 5659 5269 247 314 17 8 chr4 24178616 24178734 -178149613 - Charlie7 DNA MER1_type -2492 120 2 2418 98 3 0 chr4 24180360 24180666 -178147681 - AluSp SINE Alu -6 307 1 502 324 39 0 chr4 24180707 24180886 -178147461 - MIR SINE MIR -59 203 18 227 30 0 30 chr4 24181707 24181740 -178146607 + (TTTTTG)n Simple_repeat Simple_repeat 2 33 0 761 230 12 0 chr4 24182378 24182543 -178145804 + MER5A DNA MER1_type 23 189 0 21 36 0 0 chr4 24183347 24183375 -178144972 + AT_rich Low_complexity Low_complexity 1 28 0 11389 217 41 14 chr4 24183376 24185441 -178142906 - L1MA9 LINE L1 -40 7293 5285 2030 167 64 33 chr4 24185441 24185861 -178142486 + Tigger2a DNA MER2_type 2 434 0 11389 217 41 14 chr4 24185861 24186336 -178142011 - L1MA9 LINE L1 -2048 5285 4824 2386 148 57 7 chr4 24186336 24186741 -178141606 + MSTA LTR MaLR 4 428 0 11389 217 41 14 chr4 24186741 24188280 -178140067 - L1MA9 LINE L1 -2509 4824 3089 7096 268 37 16 chr4 24188270 24191059 -178137288 - L1MA9 LINE L1 -4317 2851 7 * 319 339 16 16 chr4 24191158 24191285 -178137062 + L2 LINE L2 3187 3313 0 213 309 32 0 chr4 24191306 24191400 -178136947 + GA-rich Low_complexity Low_complexity 1 97 0 2141 134 21 19 chr4 24192858 24193231 -178135116 - THE1C LTR MaLR 0 375 2 374 337 54 22 chr4 24193788 24193972 -178134375 - MIR SINE MIR -10 252 63 602 285 12 12 chr4 24194419 24194591 -178133756 + MIR SINE MIR 32 203 -59 1780 157 33 12 chr4 24194800 24194946 -178133401 + L1M2 LINE L1 5450 5591 -700 6260 55 0 4 chr4 24194946 24195729 -178132618 + L1PA7 LINE L1 5374 6153 -1 1780 157 33 12 chr4 24195729 24195919 -178132428 + L1M2 LINE L1 5591 5793 -498 189 178 0 0 chr4 24195919 24195964 -178132383 + (TA)n Simple_repeat Simple_repeat 2 46 0 1492 207 43 41 chr4 24195964 24196490 -178131857 + L1MA6 LINE L1 5745 6296 -4 333 0 0 0 chr4 24196822 24196859 -178131488 + (TG)n Simple_repeat Simple_repeat 2 38 0 921 198 63 16 chr4 24196940 24197193 -178131154 - L1MD3 LINE L1 -10 7985 7721 6781 143 40 13 chr4 24197640 24198838 -178129509 - Tigger3b DNA MER2_type -1 1230 1 1078 207 35 28 chr4 24199045 24199385 -178128962 + L1MCa LINE L1 20 328 -6098 794 320 56 4 chr4 24199385 24199616 -178128731 - MIR SINE MIR -2 260 18 239 211 19 0 chr4 24201964 24202016 -178126331 + MIR SINE MIR 117 169 -93 21 36 0 0 chr4 24202452 24202480 -178125867 + AT_rich Low_complexity Low_complexity 1 28 0 760 124 15 7 chr4 24203438 24203575 -178124772 + L1MA8 LINE L1 6151 6288 -3 1619 173 33 36 chr4 24204027 24204391 -178123956 - MLT1A1 LTR MaLR -2 363 1 715 88 0 0 chr4 24205211 24205313 -178123034 - L1MA2 LINE L1 0 6304 6203 320 169 0 0 chr4 24205385 24205444 -178122903 + L1MA2 LINE L1 6205 6263 -41 * 4264 85 20 11 chr4 24205438 24206087 -178122260 - L1MA2 LINE L1 -103 6201 5547 23 0 0 0 chr4 24206237 24206260 -178122087 + AT_rich Low_complexity Low_complexity 1 23 0 2342 110 0 0 chr4 24206310 24206618 -178121729 + AluSx SINE Alu 1 308 -4 327 25 0 0 chr4 24206618 24206658 -178121689 + (TA)n Simple_repeat Simple_repeat 2 41 0 2112 118 7 10 chr4 24207470 24207767 -178120580 + AluSx SINE Alu 1 296 -16 249 182 0 0 chr4 24207789 24207844 -178120503 + (CA)n Simple_repeat Simple_repeat 2 56 0 800 291 76 10 chr4 24207933 24208222 -178120125 - MER77 LTR ERV1 -4 601 294 2593 89 24 128 chr4 24208223 24208729 -178119618 - MLT2A2 LTR ERVL 0 453 1 385 382 29 32 chr4 24209793 24210133 -178118214 + L1MCa LINE L1 824 1162 -5254 208 279 254 0 chr4 24210194 24210316 -178118031 + MIR SINE MIR 46 198 -64 1779 206 21 29 chr4 24210609 24211027 -178117320 + MLT1C LTR MaLR 53 467 0 321 238 50 0 chr4 24211907 24211987 -178116360 + MIR SINE MIR 108 191 -71 218 273 0 0 chr4 24212403 24212447 -178115900 - L2 LINE L2 -47 3225 3182 651 296 55 43 chr4 24212568 24212821 -178115526 - MIR SINE MIR -5 257 2 2312 103 0 0 chr4 24213107 24213409 -178114938 + AluY SINE Alu 1 302 -9 308 323 93 25 chr4 24213649 24213810 -178114537 - LTR67 LTR ERVL -385 172 1 195 42 0 0 chr4 24214021 24214045 -178114302 + (CAA)n Simple_repeat Simple_repeat 1 24 0 852 315 114 38 chr4 24214050 24214688 -178113659 - L2 LINE L2 -569 2745 2059 245 307 0 15 chr4 24214739 24214829 -178113518 - MIR SINE MIR -101 107 20 650 296 134 41 chr4 24214981 24215479 -178112868 + L2 LINE L2 2770 3313 0 222 242 0 0 chr4 24215509 24215575 -178112772 + GA-rich Low_complexity Low_complexity 2 67 0 2322 109 0 0 chr4 24216237 24216576 -178111771 + AluSx SINE Alu 1 339 0 475 226 0 0 chr4 24216918 24217020 -178111327 + MSTD LTR MaLR 1 102 -294 216 0 0 0 chr4 24217020 24217044 -178111303 + (TC)n Simple_repeat Simple_repeat 1 24 0 660 176 141 0 chr4 24217069 24217211 -178111136 + MSTD LTR MaLR 235 396 0 300 388 78 0 chr4 24217409 24217538 -178110809 + L2 LINE L2 3134 3272 0 431 320 46 102 chr4 24218955 24219146 -178109201 - L2 LINE L2 -1 3271 3102 2300 114 3 0 chr4 24219146 24219452 -178108895 + AluSg SINE Alu 1 307 -3 431 320 46 102 chr4 24219452 24219563 -178108784 - L2 LINE L2 -170 3102 2986 621 139 8 23 chr4 24220232 24220361 -178107986 + GA-rich Low_complexity Low_complexity 5 131 0 379 308 58 26 chr4 24220614 24220716 -178107631 - MIR SINE MIR -82 180 70 2202 129 0 0 chr4 24220716 24221019 -178107328 + AluSg SINE Alu 1 303 -7 379 308 58 26 chr4 24221019 24221072 -178107275 - MIR SINE MIR -192 70 20 407 255 5 132 chr4 24221732 24221936 -178106411 - MIR SINE MIR -11 251 74 25 31 0 0 chr4 24222018 24222050 -178106297 + AT_rich Low_complexity Low_complexity 1 32 0 1369 193 198 29 chr4 24222374 24222819 -178105528 - MLT2B1 LTR ERVL 0 520 1 415 339 189 0 chr4 24222881 24223135 -178105212 - L2 LINE L2 -480 2834 2533 359 286 161 12 chr4 24223324 24223485 -178104862 - MIR SINE MIR -76 186 2 22 0 0 0 chr4 24223493 24223515 -178104832 + AT_rich Low_complexity Low_complexity 1 22 0 556 231 19 69 chr4 24223518 24223678 -178104669 - MIR SINE MIR -4 258 107 846 126 42 0 chr4 24223971 24224114 -178104233 + L1PA16 LINE L1 6018 6166 0 549 297 179 0 chr4 24224459 24224671 -178103676 + MIR SINE MIR 2 251 -11 1172 216 84 59 chr4 24225192 24225548 -178102799 - MLT1A1 LTR MaLR 0 365 1 22 70 0 0 chr4 24225972 24226015 -178102332 + AT_rich Low_complexity Low_complexity 1 43 0 205 133 44 0 chr4 24226714 24226759 -178101588 + (CA)n Simple_repeat Simple_repeat 2 48 0 3195 274 113 17 chr4 24227637 24228992 -178099355 - L2 LINE L2 0 3313 1822 462 319 9 22 chr4 24229485 24229714 -178098633 - ERVL LTR ERVL -1835 3929 3704 197 267 67 0 chr4 24229933 24229978 -178098369 + L2 LINE L2 3148 3195 -77 191 326 101 45 chr4 24230018 24230196 -178098151 + MIR SINE MIR 63 250 -12 7238 200 8 20 chr4 24231466 24233190 -178095157 + L1 LINE L1 3620 5323 -823 2133 120 0 7 chr4 24233190 24233489 -178094858 + AluSg SINE Alu 1 297 -13 7238 200 8 20 chr4 24233489 24233570 -178094777 + L1 LINE L1 5323 5403 -743 2411 132 0 11 chr4 24233575 24233954 -178094393 - THE1C LTR MaLR 0 375 1 4535 140 3 9 chr4 24233954 24234713 -178093634 + L1PA16 LINE L1 5404 6157 -9 490 276 143 22 chr4 24235401 24235716 -178092631 + MLT1K LTR MaLR 194 546 -42 21 95 0 0 chr4 24235789 24235852 -178092495 + AT_rich Low_complexity Low_complexity 1 63 0 183 114 0 0 chr4 24236384 24236419 -178091928 + (A)n Simple_repeat Simple_repeat 1 35 0 223 220 17 34 chr4 24236675 24236734 -178091613 - L2 LINE L2 -10 3303 3246 252 228 123 79 chr4 24237103 24237217 -178091130 - MIR SINE MIR -7 255 137 989 166 66 38 chr4 24237217 24237428 -178090919 - L1MB5 LINE L1 -8 6166 5950 316 286 44 11 chr4 24237428 24237519 -178090828 - MIR SINE MIR -113 149 56 1852 182 31 31 chr4 24237549 24238105 -178090242 - MLT2A2 LTR ERVL 0 554 1 1557 170 37 1 chr4 24238663 24238975 -178089372 - MLT2D LTR ERVL -52 345 6 1423 187 31 98 chr4 24238985 24239116 -178089231 + MLT1B LTR MaLR 1 139 -251 2414 71 17 0 chr4 24239116 24239410 -178088937 + AluY SINE Alu 1 299 -12 1423 187 31 98 chr4 24239410 24239696 -178088651 + MLT1B LTR MaLR 139 390 0 737 291 44 45 chr4 24239696 24240162 -178088185 + L2 LINE L2 2658 3127 -186 665 250 29 35 chr4 24240155 24240327 -178088020 - MIR SINE MIR -79 183 13 * 1463 112 95 16 chr4 24240437 24240741 -178087606 - L1MA8 LINE L1 -3 6288 5961 703 184 26 37 chr4 24242647 24242837 -178085510 + L1PB4 LINE L1 5896 6083 -73 3201 134 129 109 chr4 24242844 24244270 -178084077 + pTR5 LTR ERV1 31 2231 -23 1914 143 4 4 chr4 24244473 24244799 -178083548 - AluSx SINE Alu 0 331 6 1004 141 68 16 chr4 24244812 24245004 -178083343 - L1PA16 LINE L1 -2 6164 5963 2887 69 23 0 chr4 24245005 24245396 -178082951 + MLT2A1 LTR ERVL 1 400 -44 27 49 0 0 chr4 24245423 24245464 -178082883 + AT_rich Low_complexity Low_complexity 1 41 0 3769 21 0 0 chr4 24245475 24245911 -178082436 - L1PA3 LINE L1 -2 6153 5718 339 65 0 0 chr4 24245926 24245972 -178082375 + MLT2A1 LTR ERVL 399 444 0 370 108 0 84 chr4 24245977 24246060 -178082287 - L1PA16 LINE L1 -204 5961 5886 706 281 248 17 chr4 24246143 24246563 -178081784 - L2 LINE L2 -410 2904 2388 2071 132 0 13 chr4 24246645 24246948 -178081399 + AluSc SINE Alu 1 299 -10 456 358 58 9 chr4 24247010 24247236 -178081111 - MIR SINE MIR -21 241 5 317 272 25 0 chr4 24247343 24247424 -178080923 + MIR3 SINE MIR 120 202 -6 24 0 0 0 chr4 24248415 24248439 -178079908 + AT_rich Low_complexity Low_complexity 1 24 0 2665 102 0 19 chr4 24248774 24249145 -178079202 + THE1B LTR MaLR 1 364 0 5198 130 12 22 chr4 24249246 24250203 -178078144 + L1PB3 LINE L1 5197 6146 -8 180 0 0 103 chr4 24250208 24250247 -178078100 + (TAAAAA)n Simple_repeat Simple_repeat 1 35 0 2111 133 67 14 chr4 24250727 24251073 -178077274 - THE1B LTR MaLR 0 364 1 394 308 41 29 chr4 24251226 24251398 -178076949 + L1MEd LINE L1 944 1117 -5002 329 221 55 24 chr4 24251566 24251693 -178076654 + HAL1b LINE L1 331 461 -887 212 244 0 0 chr4 24251823 24251864 -178076483 + polypurine Low_complexity Low_complexity 2 42 0 702 251 11 38 chr4 24252178 24252361 -178075986 + MER5B DNA MER1_type 1 178 0 5516 62 4 23 chr4 24252363 24253108 -178075239 + L1PA8 LINE L1 5432 6162 -10 758 341 10 10 chr4 24254570 24254863 -178073484 - L3 LINE CR1 -56 1521 1229 402 349 48 0 chr4 24255784 24255930 -178072417 + MER91B DNA MER1_type 38 190 0 467 275 17 16 chr4 24255978 24256203 -178072144 + L1ME3A LINE L1 5688 5875 -295 571 122 11 0 chr4 24257044 24257134 -178071213 - Tigger7 DNA MER2_type 0 2487 2397 2856 171 8 6 chr4 24257136 24257655 -178070692 - Tigger7 DNA MER2_type -1967 520 1 1367 95 15 5 chr4 24257922 24258122 -178070225 - L1PA14 LINE L1 -2 6159 5958 1867 149 0 59 chr4 24258145 24258468 -178069879 - AluSx SINE Alu -8 304 1 207 309 49 25 chr4 24260425 24260506 -178067841 - MIR SINE MIR -160 102 20 1685 171 12 12 chr4 24260508 24260829 -178067518 + L1PB4 LINE L1 5823 6143 -13 180 0 0 0 chr4 24260834 24260854 -178067493 + (CAAT)n Simple_repeat Simple_repeat 4 23 0 302 283 19 28 chr4 24262736 24262842 -178065505 - MIR3 SINE MIR -6 202 98 22 80 0 0 chr4 24264222 24264272 -178064075 + AT_rich Low_complexity Low_complexity 1 50 0 2519 73 0 19 chr4 24264453 24264770 -178063577 + AluY SINE Alu 1 311 0 263 254 0 0 chr4 24265226 24265285 -178063062 + (TATG)n Simple_repeat Simple_repeat 4 62 0 199 327 84 9 chr4 24265403 24265510 -178062837 - MIR3 SINE MIR -5 203 89 378 235 30 76 chr4 24265580 24265747 -178062600 - MIR SINE MIR -44 218 64 942 88 7 0 chr4 24266025 24266162 -178062185 + L1M2 LINE L1 5644 5781 -510 911 165 6 6 chr4 24266162 24266338 -178062009 + L1MA8 LINE L1 4602 4777 -1369 * 1784 148 47 97 chr4 24266337 24266851 -178061496 + L1MA8 LINE L1 5800 6287 -4 339 311 28 0 chr4 24267838 24267944 -178060403 - L2 LINE L2 -8 3305 3197 319 354 22 31 chr4 24267967 24268193 -178060154 - MIR SINE MIR -5 257 34 486 289 37 50 chr4 24268948 24269166 -178059181 - MIR SINE MIR 0 262 48 180 0 0 0 chr4 24269932 24269952 -178058395 + (TAA)n Simple_repeat Simple_repeat 1 20 0 354 314 74 0 chr4 24269980 24270101 -178058246 + MIR SINE MIR 68 197 -65 2003 117 0 17 chr4 24270650 24270948 -178057399 + AluSg SINE Alu 5 297 -13 460 92 11 11 chr4 24270948 24271035 -178057312 + L1PA16 LINE L1 5322 5408 -758 2331 133 0 18 chr4 24271035 24271417 -178056930 - THE1C LTR MaLR 0 375 1 4438 145 3 9 chr4 24271417 24272176 -178056171 + L1PA16 LINE L1 5404 6157 -9 490 276 143 22 chr4 24272864 24273179 -178055168 + MLT1K LTR MaLR 194 546 -42 21 95 0 0 chr4 24273252 24273315 -178055032 + AT_rich Low_complexity Low_complexity 1 63 0 183 114 0 0 chr4 24273848 24273883 -178054464 + (A)n Simple_repeat Simple_repeat 1 35 0 223 220 17 34 chr4 24274139 24274198 -178054149 - L2 LINE L2 -10 3303 3246 285 272 70 26 chr4 24274567 24274681 -178053666 - MIR SINE MIR -7 255 137 662 232 66 38 chr4 24274681 24274892 -178053455 - L1MB5 LINE L1 -8 6166 5950 264 308 44 11 chr4 24274892 24274983 -178053364 - MIR SINE MIR -113 149 56 1786 183 27 38 chr4 24275016 24275573 -178052774 - MLT2A2 LTR ERVL -7 547 1 1557 170 37 1 chr4 24276132 24276444 -178051903 - MLT2D LTR ERVL -52 345 6 403 264 80 8 chr4 24276454 24276579 -178051768 + MLT1B LTR MaLR 1 134 -256 1997 129 0 16 chr4 24276585 24276888 -178051459 + AluSq SINE Alu 1 298 -15 222 301 55 0 chr4 24278621 24278694 -178049653 - MIR SINE MIR -99 163 87 836 281 32 24 chr4 24279145 24279394 -178048953 - MIR SINE MIR -10 252 2 186 43 0 0 chr4 24279441 24279464 -178048883 + (TTCA)n Simple_repeat Simple_repeat 4 26 0 334 347 148 0 chr4 24279475 24279671 -178048676 - MIR SINE MIR -8 254 30 512 284 37 50 chr4 24280611 24280829 -178047518 - MIR SINE MIR 0 262 48 180 0 0 0 chr4 24281590 24281610 -178046737 + (TAA)n Simple_repeat Simple_repeat 1 20 0 354 314 74 0 chr4 24281638 24281759 -178046588 + MIR SINE MIR 68 197 -65 2218 68 47 0 chr4 24282307 24282585 -178045762 + AluYa5 SINE Alu 5 295 -16 2253 92 3 0 chr4 24283684 24283977 -178044370 + AluY SINE Alu 1 294 -17 213 39 0 0 chr4 24285465 24285491 -178042856 + (TA)n Simple_repeat Simple_repeat 2 27 0 479 258 60 26 chr4 24286665 24286816 -178041531 + L2 LINE L2 3158 3313 0 227 322 40 141 chr4 24287512 24287703 -178040644 - L2 LINE L2 -52 3220 3070 643 262 35 31 chr4 24287703 24287959 -178040388 + MIR SINE MIR 2 258 -4 227 322 40 141 chr4 24287959 24288071 -178040276 - L2 LINE L2 -202 3070 2948 1675 193 45 30 chr4 24288096 24288544 -178039803 - MER89 LTR ERV1 -3 556 3 1948 222 59 59 chr4 24288802 24289082 -178039265 + MLT1E2 LTR MaLR 18 297 -329 2176 119 3 0 chr4 24289082 24289385 -178038962 + AluSg SINE Alu 1 304 -6 1948 222 59 59 chr4 24289385 24289713 -178038634 + MLT1E2 LTR MaLR 296 626 0 267 294 206 0 chr4 24289965 24290101 -178038246 - MIR SINE MIR -89 173 10 2507 76 0 0 chr4 24290454 24290758 -178037589 - AluY SINE Alu -7 304 1 438 228 50 0 chr4 24290809 24290910 -178037437 + MIR SINE MIR 87 192 -70 1801 103 36 0 chr4 24292003 24292256 -178036091 - AluSg SINE Alu 0 310 49 2110 236 18 18 chr4 24292301 24292806 -178035541 - MLT1D LTR MaLR 0 505 1 343 258 161 0 chr4 24293678 24293802 -178034545 - MER46C DNA MER2_type 0 338 195 241 328 0 0 chr4 24294078 24294145 -178034202 - MIR SINE MIR -117 145 79 185 356 33 22 chr4 24294273 24294363 -178033984 + MIR SINE MIR 158 248 -14 218 279 33 16 chr4 24294549 24294610 -178033737 + L2 LINE L2 3210 3271 -1 209 360 13 47 chr4 24294757 24294907 -178033440 - L2 LINE L2 -234 3038 2894 2154 98 7 0 chr4 24295101 24295410 -178032937 - AluSp SINE Alu 0 317 7 278 120 40 0 chr4 24296228 24296278 -178032069 - MER96 DNA MER1_type? -119 56 5 1195 219 5 0 chr4 24296355 24296574 -178031773 - MER58A DNA MER1_type 0 224 5 180 309 118 0 chr4 24296593 24296661 -178031686 + MIR SINE MIR 37 112 -150 681 281 64 36 chr4 24296788 24297037 -178031310 - MIR SINE MIR 0 262 7 209 341 0 12 chr4 24298192 24298274 -178030073 - L2 LINE L2 0 3272 3192 379 119 0 0 chr4 24298390 24298457 -178029890 + L1MC2 LINE L1 6277 6343 -1 25 0 0 0 chr4 24298479 24298504 -178029843 + AT_rich Low_complexity Low_complexity 1 25 0 840 216 45 9 chr4 24299252 24299472 -178028875 + MER63C DNA MER1_type 1 228 -702 1734 118 55 118 chr4 24299472 24299872 -178028475 - THE1C LTR MaLR 0 375 1 1473 232 50 9 chr4 24299872 24300519 -178027828 + MER63C DNA MER1_type 221 930 0 221 328 0 0 chr4 24300522 24300580 -178027767 - MIR SINE MIR -157 105 48 297 354 100 35 chr4 24301070 24301531 -178026816 + L1ME3A LINE L1 3 493 -5626 * 517 268 134 0 chr4 24301506 24301685 -178026662 + HAL1 LINE L1 1555 1757 -733 2121 134 97 0 chr4 24301718 24302060 -178026287 - THE1C LTR MaLR 0 375 1 825 174 56 51 chr4 24302062 24302258 -178026089 + MLT1B LTR MaLR 4 200 -190 433 287 44 7 chr4 24302294 24302430 -178025917 + HAL1 LINE L1 1786 1926 -564 1996 192 174 0 chr4 24302430 24302873 -178025474 - MLT2B1 LTR ERVL 0 520 1 23 0 0 0 chr4 24302877 24302900 -178025447 + AT_rich Low_complexity Low_complexity 1 23 0 3662 201 28 14 chr4 24303067 24303848 -178024499 - L1MB3 LINE L1 0 6183 5392 582 290 44 58 chr4 24303880 24304245 -178024102 + HAL1 LINE L1 1912 2271 -219 23 0 0 53 chr4 24304465 24304487 -178023860 + AT_rich Low_complexity Low_complexity 1 22 -14 1574 90 4 26 chr4 24304487 24304720 -178023627 - L1PA8A LINE L1 -3 6128 5901 23 0 0 53 chr4 24304720 24304735 -178023612 + AT_rich Low_complexity Low_complexity 22 36 0 374 303 115 31 chr4 24304876 24305578 -178022769 + L1ME3A LINE L1 2396 3156 -2973 216 86 0 0 chr4 24307224 24307259 -178021088 + (A)n Simple_repeat Simple_repeat 1 35 0 1211 280 97 28 chr4 24307437 24308152 -178020195 + L1ME3A LINE L1 3339 4102 -2027 198 0 0 0 chr4 24308221 24308243 -178020104 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 2857 87 2 12 chr4 24308319 24308752 -178019595 + L1PA10 LINE L1 5750 6178 0 853 299 84 28 chr4 24308953 24309730 -178018617 + L1ME3A LINE L1 4467 5286 -843 1532 271 45 7 chr4 24309737 24310202 -178018145 + L1MEc LINE L1 40 522 -5874 399 196 108 0 chr4 24310212 24310314 -178018033 + L1MEc LINE L1 2504 2616 -3599 589 293 99 54 chr4 24310340 24310947 -178017400 + L1ME3A LINE L1 5301 5934 -219 293 337 29 17 chr4 24311192 24311367 -178016980 - MIR SINE MIR -12 250 74 375 242 278 41 chr4 24311944 24312138 -178016209 + MIR SINE MIR 20 259 -3 2339 96 0 0 chr4 24312617 24312918 -178015429 - AluSg SINE Alu -9 301 1 730 267 65 28 chr4 24313451 24313911 -178014436 + HAL1 LINE L1 1877 2353 -154 4132 16 0 14 chr4 24314415 24314903 -178013444 + L1PA3 LINE L1 5675 6155 0 219 88 0 0 chr4 24314912 24314946 -178013401 + (TAAAAA)n Simple_repeat Simple_repeat 2 35 0 23 0 0 0 chr4 24315103 24315126 -178013221 + AT_rich Low_complexity Low_complexity 1 23 0 231 125 0 0 chr4 24315385 24315425 -178012922 + (TATATG)n Simple_repeat Simple_repeat 3 42 0 251 266 0 25 chr4 24315519 24315598 -178012749 + (TA)n Simple_repeat Simple_repeat 2 78 0 198 150 0 0 chr4 24315675 24315715 -178012632 + (TATATG)n Simple_repeat Simple_repeat 3 42 0 328 258 10 31 chr4 24315844 24315941 -178012406 + GA-rich Low_complexity Low_complexity 5 99 0 426 20 0 0 chr4 24316694 24316745 -178011602 + (CA)n Simple_repeat Simple_repeat 2 52 0 23 0 0 0 chr4 24316817 24316840 -178011507 + AT_rich Low_complexity Low_complexity 1 23 0 390 159 0 0 chr4 24316906 24316975 -178011372 + CT-rich Low_complexity Low_complexity 1 69 0 1921 181 16 18 chr4 24317405 24317786 -178010561 + MLT1B LTR MaLR 11 390 0 1205 273 47 43 chr4 24318096 24318540 -178009807 - MLT1C LTR MaLR 0 467 22 1666 267 80 10 chr4 24318972 24319459 -178008888 - LTR33 LTR ERVL 0 521 1 423 306 145 16 chr4 24320302 24320531 -178007816 - MIR SINE MIR 0 262 1 508 208 0 0 chr4 24320553 24320649 -178007698 + MIR SINE MIR 65 160 -102 361 295 150 12 chr4 24322019 24322192 -178006155 + MIR SINE MIR 66 262 0 25 51 0 0 chr4 24323126 24323165 -178005182 + AT_rich Low_complexity Low_complexity 1 39 0 24 0 0 0 chr4 24323885 24323909 -178004438 + AT_rich Low_complexity Low_complexity 1 24 0 1213 263 80 25 chr4 24324044 24324444 -178003903 + LTR16B LTR ERVL 41 462 -2 345 207 0 0 chr4 24324462 24324549 -178003798 + (ATG)n Simple_repeat Simple_repeat 1 87 0 558 248 20 21 chr4 24324963 24325129 -178003218 - L1PB4 LINE L1 -6 6160 5996 404 362 102 24 chr4 24326037 24326614 -178001733 + L2 LINE L2 2111 2732 -582 327 343 36 7 chr4 24326789 24326926 -178001421 + MER5A DNA MER1_type 43 183 -6 1647 156 47 25 chr4 24327127 24327441 -178000906 - AluSg SINE Alu 0 320 1 21 36 0 0 chr4 24327662 24327690 -178000657 + AT_rich Low_complexity Low_complexity 1 28 0 281 388 20 6 chr4 24329901 24330132 -177998215 - L2 LINE L2 -310 2962 2731 * 776 329 34 0 chr4 24330128 24330362 -177997985 - MIR SINE MIR 0 262 21 2260 104 3 22 chr4 24331321 24331639 -177996708 + AluSx SINE Alu 1 312 0 384 169 0 0 chr4 24331975 24332040 -177996307 - MLT1A1 LTR MaLR -2 363 299 2963 57 0 0 chr4 24332041 24332410 -177995937 - L1PA8 LINE L1 -233 5939 5571 1384 73 23 41 chr4 24332410 24332628 -177995719 + L1PA8 LINE L1 5958 6172 0 1339 156 68 37 chr4 24332633 24332821 -177995526 - MLT1A1 LTR MaLR -61 304 102 2064 139 44 33 chr4 24332821 24333181 -177995166 - THE1B LTR MaLR 0 364 1 1339 156 68 37 chr4 24333181 24333287 -177995060 - MLT1A1 LTR MaLR -263 102 1 235 279 51 51 chr4 24333494 24333573 -177994774 + HAL1 LINE L1 2 80 -2427 2989 171 24 25 chr4 24334278 24334952 -177993395 - L1MA7 LINE L1 0 6291 5619 345 326 51 78 chr4 24334967 24335261 -177993086 + HAL1 LINE L1 968 1253 -1254 255 61 0 0 chr4 24336184 24336217 -177992130 + (CA)n Simple_repeat Simple_repeat 2 34 0 23 0 0 0 chr4 24336858 24336881 -177991466 + AT_rich Low_complexity Low_complexity 1 23 0 482 312 64 10 chr4 24337759 24337961 -177990386 - MIR SINE MIR -2 260 48 656 310 84 4 chr4 24338421 24338647 -177989700 - MIR SINE MIR -17 245 2 227 356 91 9 chr4 24339079 24339298 -177989049 + L2 LINE L2 2941 3177 -136 1109 192 76 108 chr4 24339305 24339686 -177988661 - MLT1C LTR MaLR 0 467 99 507 223 0 0 chr4 24339699 24339793 -177988554 + MLT1C LTR MaLR 374 467 0 319 240 160 48 chr4 24339940 24340065 -177988282 - MIR SINE MIR -116 146 8 888 275 172 14 chr4 24340955 24341576 -177986771 - HAL1 LINE L1 -11 2496 1778 1089 256 63 24 chr4 24341577 24341960 -177986387 - HAL1 LINE L1 -766 1741 1344 451 161 36 18 chr4 24341983 24342095 -177986252 + L1MD2 LINE L1 6246 6359 0 2125 89 0 0 chr4 24342107 24342376 -177985971 + AluSx SINE Alu 39 307 -5 1820 175 72 56 chr4 24342976 24343474 -177984873 - Charlie1b DNA MER1_type -6 517 12 1752 143 164 29 chr4 24344174 24344377 -177983970 - MSTA LTR MaLR 0 428 254 2192 100 0 0 chr4 24344377 24344656 -177983691 - AluSg SINE Alu -16 294 16 1752 143 164 29 chr4 24344656 24344829 -177983518 - MSTA LTR MaLR -174 254 1 1123 287 35 50 chr4 24345059 24345481 -177982866 + MLT1J2 LTR MaLR 1 416 -34 236 265 0 0 chr4 24346539 24346607 -177981740 + MLT1K LTR MaLR 504 571 -17 249 196 0 0 chr4 24346739 24346790 -177981557 + (TATG)n Simple_repeat Simple_repeat 1 51 0 287 284 0 0 chr4 24347506 24347573 -177980774 + MER96 DNA MER1_type? 3 69 -106 299 319 76 91 chr4 24348444 24348720 -177979627 + L2 LINE L2 2910 3181 -91 319 336 44 0 chr4 24348771 24348884 -177979463 - L2 LINE L2 -4 3268 3151 329 324 12 35 chr4 24349834 24350004 -177978343 + L1ME LINE L1 1 166 -5904 397 368 13 39 chr4 24350080 24350314 -177978033 + MIR SINE MIR 7 234 -28 246 261 57 109 chr4 24350468 24350698 -177977649 - MER39 LTR ERV1 -234 473 256 1579 222 90 42 chr4 24350850 24351358 -177976989 + MER34 LTR ERV1 11 537 -5 2376 97 3 0 chr4 24351621 24351930 -177976417 - AluSg SINE Alu 0 310 1 1287 141 0 0 chr4 24352149 24352334 -177976013 + AluSx SINE Alu 13 197 -115 191 36 36 0 chr4 24352339 24352367 -177975980 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 670 121 26 43 chr4 24352386 24352502 -177975845 + AluSx SINE Alu 181 294 -15 26 0 0 0 chr4 24352502 24352528 -177975819 + AT_rich Low_complexity Low_complexity 1 26 0 207 0 0 0 chr4 24353991 24354014 -177974333 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 256 343 103 11 chr4 24354205 24354380 -177973967 - MIR3 SINE MIR -6 202 12 1960 127 23 7 chr4 24354729 24355029 -177973318 - AluSg SINE Alu 0 310 6 431 127 38 0 chr4 24355045 24355124 -177973223 + GA-rich Low_complexity Low_complexity 3 84 0 2717 166 147 45 chr4 24355588 24355666 -177972681 - MER39 LTR ERV1 -3 704 635 2615 89 41 36 chr4 24355666 24355869 -177972478 + L1MA5A LINE L1 5847 6048 -249 2191 113 0 10 chr4 24355869 24356178 -177972169 + AluSg SINE Alu 1 306 -4 2615 89 41 36 chr4 24356178 24356413 -177971934 + L1MA5A LINE L1 6048 6287 -10 2717 166 147 45 chr4 24356413 24356973 -177971374 - MER39 LTR ERV1 -72 635 1 314 340 56 6 chr4 24357414 24357576 -177970771 - MIR SINE MIR -36 226 57 1007 103 5 32 chr4 24358249 24358434 -177969913 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 597 151 8 16 chr4 24358434 24358560 -177969787 + GA-rich Low_complexity Low_complexity 4 128 0 477 185 12 0 chr4 24359310 24359391 -177968956 + MER93b LTR ERV1 1 82 -291 190 337 12 23 chr4 24359882 24359968 -177968379 + L2 LINE L2 2933 3017 -255 194 290 51 80 chr4 24360130 24360268 -177968079 + L2 LINE L2 2913 3046 -226 859 194 12 6 chr4 24360381 24360541 -177967806 - FAM SINE Alu -17 168 8 447 298 58 35 chr4 24360875 24361046 -177967301 + MIR SINE MIR 19 193 -69 21 0 0 0 chr4 24361091 24361112 -177967235 + AT_rich Low_complexity Low_complexity 1 21 0 464 222 20 18 chr4 24361279 24361440 -177966907 + MER57A LTR ERV1 215 403 0 370 345 141 10 chr4 24361489 24361695 -177966652 + MIR SINE MIR 2 234 -28 21 0 0 0 chr4 24362194 24362215 -177966132 + AT_rich Low_complexity Low_complexity 1 21 0 22 70 0 0 chr4 24362756 24362799 -177965548 + AT_rich Low_complexity Low_complexity 1 43 0 578 306 97 9 chr4 24362829 24363045 -177965302 - MIR SINE MIR 0 262 28 539 167 29 0 chr4 24363221 24363359 -177964988 + GA-rich Low_complexity Low_complexity 2 143 0 1733 33 0 0 chr4 24364141 24364351 -177963996 + L1PA5 LINE L1 5945 6154 0 261 0 0 0 chr4 24364358 24364387 -177963960 + (TA)n Simple_repeat Simple_repeat 2 30 0 331 244 63 8 chr4 24365777 24365904 -177962443 + HAL1 LINE L1 113 246 -2261 637 240 80 7 chr4 24366064 24366214 -177962133 + MER63A DNA MER1_type 49 209 -1 468 289 180 12 chr4 24366265 24366604 -177961743 + HAL1 LINE L1 438 833 -1674 1347 200 142 42 chr4 24366608 24367125 -177961222 + MER39 LTR ERV1 1 562 -3 1561 175 7 51 chr4 24367164 24367456 -177960891 - AluJb SINE Alu -28 284 6 2221 227 54 36 chr4 24367599 24368898 -177959449 + L1ME1 LINE L1 4832 6333 -1 1307 203 92 0 chr4 24369272 24369578 -177958769 + MER45B DNA AcHobo 703 1036 -4 956 269 25 65 chr4 24369704 24370057 -177958290 - MER115 DNA AcHobo 0 693 355 * 1170 126 10 35 chr4 24370051 24370250 -177958097 - MSTA LTR MaLR -232 196 3 342 0 0 0 chr4 24370333 24370371 -177957976 + (CA)n Simple_repeat Simple_repeat 2 39 0 3332 143 24 2 chr4 24372590 24373088 -177955259 - MER1A DNA MER1_type 0 529 21 360 0 0 0 chr4 24373300 24373340 -177955007 + (TAA)n Simple_repeat Simple_repeat 2 41 0 268 311 48 19 chr4 24373341 24373444 -177954903 - MIR SINE MIR -8 254 149 1890 184 14 11 chr4 24373444 24373802 -177954545 + MLT1A1 LTR MaLR 1 359 -6 473 283 20 46 chr4 24373808 24373960 -177954387 - MIR SINE MIR -109 153 6 2343 88 0 3 chr4 24375103 24375398 -177952949 + AluSg SINE Alu 3 296 -14 2369 150 28 28 chr4 24375522 24375955 -177952392 - Tigger2a DNA MER2_type -1 433 1 261 324 0 29 chr4 24376074 24376179 -177952168 + Zaphod DNA AcHobo 11 112 -3919 220 170 43 0 chr4 24376254 24376301 -177952046 + (CATATA)n Simple_repeat Simple_repeat 3 51 0 324 255 0 78 chr4 24376301 24376403 -177951944 - L1MC4 LINE L1 -1335 6707 6614 2798 198 74 74 chr4 24376412 24377162 -177951185 + L1ME2 LINE L1 5261 6013 -151 1805 168 0 10 chr4 24377162 24377459 -177950888 + AluJb SINE Alu 1 294 -18 2798 198 74 74 chr4 24377459 24377612 -177950735 + L1ME2 LINE L1 6012 6164 0 1996 255 47 51 chr4 24377694 24378589 -177949758 + Zaphod DNA AcHobo 100 990 -3041 685 271 24 0 chr4 24378610 24378776 -177949571 + MER58B DNA MER1_type 171 340 -1 1327 226 74 13 chr4 24378786 24379179 -177949168 + Zaphod DNA AcHobo 3596 4012 -19 917 120 12 18 chr4 24379613 24379780 -177948567 + L1MA5A LINE L1 6132 6297 0 378 242 11 0 chr4 24380457 24380552 -177947795 + MER69 DNA AcHobo 2429 2524 -2 575 155 10 58 chr4 24380559 24380634 -177947713 - LOR1b LTR ERV1 0 461 391 2455 85 51 20 chr4 24380634 24380987 -177947360 + THE1B LTR MaLR 1 364 0 575 155 10 58 chr4 24380987 24381014 -177947333 - LOR1b LTR ERV1 -70 391 364 405 326 80 17 chr4 24381296 24381471 -177946876 + MIR SINE MIR 19 204 -58 823 314 16 4 chr4 24381523 24381768 -177946579 + MIR SINE MIR 4 251 -11 21 0 0 0 chr4 24382082 24382103 -177946244 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr4 24383557 24383585 -177944762 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr4 24384017 24384038 -177944309 + AT_rich Low_complexity Low_complexity 1 21 0 4975 152 29 77 chr4 24384083 24384235 -177944112 + L1MA7 LINE L1 5181 5339 -952 1642 155 0 75 chr4 24384235 24384557 -177943790 + AluJb SINE Alu 1 298 -14 4975 152 29 77 chr4 24384557 24385413 -177942934 + L1MA7 LINE L1 5339 6164 -127 2084 104 0 11 chr4 24385413 24385727 -177942620 + AluSq SINE Alu 1 311 0 4975 152 29 77 chr4 24385727 24385847 -177942500 + L1MA7 LINE L1 6164 6288 -3 27 0 0 0 chr4 24386629 24386656 -177941691 + AT_rich Low_complexity Low_complexity 1 27 0 357 171 132 47 chr4 24386911 24387040 -177941307 - MER103 DNA DNA -16 150 11 309 250 45 11 chr4 24387411 24387499 -177940848 + MER103 DNA DNA 68 158 -8 188 119 0 24 chr4 24387737 24387779 -177940568 + (TAGA)n Simple_repeat Simple_repeat 2 42 0 266 353 33 87 chr4 24387874 24388149 -177940198 - L2 LINE L2 -3 3269 3010 2244 173 12 2 chr4 24389243 24389642 -177938705 + MER57A LTR ERV1 1 403 0 2680 121 19 17 chr4 24389714 24390136 -177938211 + MSTA LTR MaLR 1 423 -5 384 299 29 4 chr4 24390205 24390395 -177937952 - MIR SINE MIR -2 260 3 199 244 39 13 chr4 24390403 24390481 -177937866 - MIR SINE MIR -36 226 147 5104 100 31 8 chr4 24392272 24393043 -177935304 + L1PA13 LINE L1 5371 6159 -4 1551 213 60 23 chr4 24393176 24393368 -177934979 - MLT1A1 LTR MaLR -5 360 148 2261 123 0 7 chr4 24393368 24393677 -177934670 - AluSg SINE Alu -3 307 1 1551 213 60 23 chr4 24393677 24393831 -177934516 - MLT1A1 LTR MaLR -217 148 1 476 221 0 49 chr4 24393862 24393990 -177934357 + L1MB3 LINE L1 5665 5779 -392 249 176 14 54 chr4 24394001 24394075 -177934272 - L1M3 LINE L1 -350 5833 5763 1338 128 8 51 chr4 24394129 24394386 -177933961 + L1MB3 LINE L1 5787 6032 -151 390 214 18 89 chr4 24394380 24394548 -177933799 + L1MB3 LINE L1 5998 6153 -30 * 191 114 29 0 chr4 24394820 24394855 -177933492 + (TA)n Simple_repeat Simple_repeat 1 36 0 24 53 0 0 chr4 24395244 24395282 -177933065 + AT_rich Low_complexity Low_complexity 1 38 0 295 387 17 0 chr4 24395539 24395658 -177932689 + MIR3 SINE MIR 81 201 -7 193 350 0 0 chr4 24395816 24395876 -177932471 - MIR SINE MIR -1 261 202 1225 238 141 17 chr4 24395959 24396370 -177931977 + MLT1H LTR MaLR 72 533 -16 537 252 50 7 chr4 24396397 24396536 -177931811 - MIR SINE MIR -43 219 75 195 350 68 49 chr4 24396980 24397143 -177931204 - L3 LINE CR1 -410 1167 1002 358 314 7 50 chr4 24397198 24397338 -177931009 + MIR SINE MIR 16 149 -113 592 290 86 75 chr4 24397417 24397845 -177930502 - MLT2F LTR ERVL -52 611 179 2830 168 86 90 chr4 24397891 24399090 -177929257 - LTR12 LTR ERV1 -124 1523 10 303 167 0 56 chr4 24399090 24399162 -177929185 + MER53 DNA DNA 38 105 -84 489 164 41 16 chr4 24399162 24399284 -177929063 + MER53 DNA DNA 65 189 0 1190 163 46 15 chr4 24399361 24399605 -177928742 + L1M3 LINE L1 5423 5647 -524 221 57 29 0 chr4 24400402 24400437 -177927910 + (CA)n Simple_repeat Simple_repeat 2 37 0 362 353 77 31 chr4 24400655 24400916 -177927431 + L1M4 LINE L1 2530 2802 -3344 390 300 79 7 chr4 24400940 24401080 -177927267 + L1M4 LINE L1 2877 3026 -3120 1268 142 4 18 chr4 24401081 24401306 -177927041 - MER46A DNA MER2_type 0 236 15 417 308 105 22 chr4 24401339 24402007 -177926340 + L1M4 LINE L1 3047 3769 -2377 1978 134 42 0 chr4 24402178 24402462 -177925885 + AluSx SINE Alu 3 298 -14 467 309 73 64 chr4 24402740 24403083 -177925264 - L2 LINE L2 -493 2821 2476 234 273 54 132 chr4 24404549 24404754 -177923593 - L2 LINE L2 -54 3218 3030 296 319 84 0 chr4 24405083 24405202 -177923145 - L2 LINE L2 -8 3264 3136 312 250 146 14 chr4 24405403 24405615 -177922732 + L1ME4a LINE L1 5881 6120 -1 368 293 27 48 chr4 24406025 24406172 -177922175 - MIR SINE MIR -71 191 48 279 79 0 0 chr4 24407336 24407374 -177920973 + (T)n Simple_repeat Simple_repeat 1 38 0 328 266 49 49 chr4 24408301 24408444 -177919903 + MIR3 SINE MIR 3 145 -63 277 263 44 44 chr4 24408863 24408977 -177919370 + LTR16A1 LTR ERVL 180 293 -164 285 95 0 0 chr4 24408977 24409019 -177919328 + L1PB4 LINE L1 5716 5757 -399 225 169 0 0 chr4 24409024 24409083 -177919264 - LTR66 LTR ERVL -158 452 394 220 219 0 0 chr4 24409083 24409124 -177919223 + (CATATA)n Simple_repeat Simple_repeat 6 46 0 1728 195 3 19 chr4 24409124 24409503 -177918844 + L1PB4 LINE L1 5782 6154 -2 227 283 10 0 chr4 24409524 24409623 -177918724 + LTR16A1 LTR ERVL 328 427 -30 261 272 16 99 chr4 24409693 24409807 -177918540 + MIR SINE MIR 40 134 -128 2230 115 6 10 chr4 24409807 24410120 -177918227 + AluSx SINE Alu 1 312 0 261 272 16 99 chr4 24410120 24410209 -177918138 + MIR SINE MIR 134 229 -33 1334 134 49 22 chr4 24411082 24411305 -177917042 + MER30 DNA MER1_type 2 230 0 661 308 148 39 chr4 24411421 24411859 -177916488 - L2 LINE L2 0 3313 2828 734 252 108 61 chr4 24411997 24412390 -177915957 + L2 LINE L2 2573 3028 -285 2123 114 0 0 chr4 24412390 24412687 -177915660 - AluSx SINE Alu -15 297 1 734 252 108 61 chr4 24412687 24412900 -177915447 + L2 LINE L2 3028 3229 -84 848 268 27 46 chr4 24412923 24413296 -177915051 + MLT1I LTR MaLR 38 403 -6 259 345 0 0 chr4 24413297 24413384 -177914963 + L2 LINE L2 3182 3268 -4 682 246 18 101 chr4 24413881 24414010 -177914337 + MIR SINE MIR 35 138 -124 1991 140 3 0 chr4 24414010 24414296 -177914051 + AluJb SINE Alu 1 287 -25 682 246 18 101 chr4 24414296 24414394 -177913953 + MIR SINE MIR 138 243 -19 385 367 122 14 chr4 24414499 24414867 -177913480 - L2 LINE L2 -563 2751 2344 781 229 64 54 chr4 24414927 24415224 -177913123 + L2 LINE L2 3009 3308 -5 2344 66 3 13 chr4 24415416 24415719 -177912628 + AluY SINE Alu 1 300 -11 311 219 44 34 chr4 24416340 24416490 -177911857 + L1MC4 LINE L1 5463 5614 -507 2470 78 7 182 chr4 24416490 24417039 -177911308 - MLT2A2 LTR ERVL 0 453 1 364 269 102 43 chr4 24417039 24417363 -177910984 + L1MC4 LINE L1 5607 5949 -1859 201 154 0 0 chr4 24417786 24417825 -177910522 + T-rich Low_complexity Low_complexity 1 39 0 523 328 39 15 chr4 24419033 24419237 -177909110 - MIR SINE MIR -31 231 23 481 324 19 23 chr4 24420770 24421032 -177907315 - MIR SINE MIR 0 262 2 225 0 0 0 chr4 24421099 24421124 -177907223 + (T)n Simple_repeat Simple_repeat 1 25 0 320 209 209 0 chr4 24421548 24421639 -177906708 + L2 LINE L2 3202 3311 -2 2079 123 0 7 chr4 24422113 24422415 -177905932 + AluY SINE Alu 2 301 -10 2282 61 0 0 chr4 24422425 24422702 -177905645 + AluY SINE Alu 29 305 -6 532 308 101 45 chr4 24422708 24423251 -177905096 + L2 LINE L2 2722 3310 -3 229 288 87 2 chr4 24426192 24426279 -177902068 + MIR SINE MIR 48 147 -61 1390 248 54 40 chr4 24426292 24426788 -177901559 + MLT1H1 LTR MaLR 51 553 -2 820 287 100 36 chr4 24426824 24427273 -177901074 + L1MEd LINE L1 7 484 -5635 281 216 0 34 chr4 24427273 24427361 -177900986 + L1MA8 LINE L1 6205 6289 -2 357 331 62 22 chr4 24427388 24427566 -177900781 + L1MEd LINE L1 489 673 -5446 441 233 34 125 chr4 24427569 24427745 -177900602 - MER63A DNA MER1_type -2 208 49 2043 130 10 10 chr4 24427921 24428213 -177900134 + AluSx SINE Alu 1 292 -20 305 267 11 22 chr4 24428213 24428303 -177900044 + L1MC4 LINE L1 6615 6703 -1339 198 103 0 0 chr4 24428305 24428334 -177900013 + (CATA)n Simple_repeat Simple_repeat 4 32 0 12066 209 31 9 chr4 24428493 24431062 -177897285 + L1 LINE L1 127 2753 -4096 4165 176 32 25 chr4 24431124 24431309 -177897038 + L1 LINE L1 4892 5074 -1774 2248 118 0 3 chr4 24431309 24431614 -177896733 + AluSq SINE Alu 1 304 -9 4165 176 32 25 chr4 24431614 24432412 -177895935 + L1 LINE L1 5074 5882 -966 479 47 0 47 chr4 24432411 24432497 -177895850 + L1M LINE L1 5959 6040 -965 * 731 119 25 0 chr4 24432497 24432615 -177895732 - Tigger3(Golem) DNA MER2_type -137 2892 2772 288 197 0 30 chr4 24432619 24432685 -177895662 - Tigger3(Golem) DNA MER2_type -2895 134 71 2134 109 0 3 chr4 24432731 24433015 -177895332 - AluSg SINE Alu -27 283 1 388 238 38 0 chr4 24433015 24433095 -177895252 - Tigger3(Golem) DNA MER2_type -2946 83 1 1384 219 36 71 chr4 24433097 24433699 -177894648 - L1M4 LINE L1 -907 5308 4728 1811 195 0 3 chr4 24433712 24434020 -177894327 - AluJb SINE Alu 0 312 6 507 164 188 0 chr4 24434023 24434188 -177894159 - L1MEc LINE L1 -3174 3041 2846 2811 222 55 23 chr4 24434237 24434966 -177893381 - MER21B LTR ERV1 -107 756 5 1803 269 26 72 chr4 24434973 24435758 -177892589 - L1MEc LINE L1 -3366 2849 2228 6271 81 50 0 chr4 24435758 24436676 -177891671 - L1PA8A LINE L1 0 6131 5214 1803 269 26 72 chr4 24436676 24437592 -177890755 - L1MEc LINE L1 -3987 2228 1271 205 118 39 0 chr4 24437634 24437685 -177890662 + (TA)n Simple_repeat Simple_repeat 1 53 0 1383 199 44 58 chr4 24437694 24437816 -177890531 - MLT1B LTR MaLR 0 390 268 1439 136 174 8 chr4 24437816 24438081 -177890266 + AluSg SINE Alu 1 305 0 1383 199 44 58 chr4 24438081 24438319 -177890028 - MLT1B LTR MaLR -122 268 34 180 111 0 0 chr4 24438679 24438706 -177889641 + (GAAAA)n Simple_repeat Simple_repeat 4 30 0 278 277 0 21 chr4 24439819 24439913 -177888434 + CT-rich Low_complexity Low_complexity 1 92 0 2051 189 58 5 chr4 24440267 24440684 -177887663 + MLT1C LTR MaLR 29 467 0 706 222 73 18 chr4 24440958 24441232 -177887115 + L1MB7 LINE L1 3776 4059 -2087 1569 224 22 5 chr4 24441235 24441645 -177886702 + L1MB7 LINE L1 4716 5132 -1014 1479 245 93 21 chr4 24441654 24442139 -177886208 - MLT2B1 LTR ERVL 0 520 1 1029 171 40 16 chr4 24442142 24442393 -177885954 + L1MB7 LINE L1 5144 5400 -746 1373 253 67 5 chr4 24442393 24442764 -177885583 - MSTD LTR MaLR -2 394 1 5388 223 81 82 chr4 24442764 24444501 -177883846 - MSTD-int LTR MaLR 0 1735 2 1442 201 98 24 chr4 24444503 24444872 -177883475 - MSTD LTR MaLR 0 396 1 2151 184 86 65 chr4 24444872 24445513 -177882834 + L1MB7 LINE L1 5398 6051 -133 1055 203 189 25 chr4 24445515 24445959 -177882388 + Zaphod DNA AcHobo 311 827 -3204 1391 242 48 5 chr4 24446092 24446509 -177881838 + Zaphod DNA AcHobo 3596 4030 -1 307 167 30 0 chr4 24447033 24447099 -177881248 - MLT1D LTR MaLR -8 497 430 592 173 113 40 chr4 24447234 24447384 -177880963 + MLT1A1 LTR MaLR 1 161 -204 4530 22 5 2 chr4 24447515 24448066 -177880281 - L1PA3 LINE L1 -108 6047 5495 517 211 29 0 chr4 24448456 24448467 -177879880 + MER5A DNA MER1_type 6 19 -170 205 273 100 36 chr4 24448467 24448577 -177879770 - MER5A DNA MER1_type -2 187 71 1525 214 7 0 chr4 24448727 24449012 -177879335 - AluJo SINE Alu -25 287 1 2101 135 3 0 chr4 24450115 24450419 -177877928 - AluSq SINE Alu -8 305 1 2015 135 3 0 chr4 24450499 24450811 -177877536 - L1PA13 LINE L1 -2 6161 5849 249 185 13 0 chr4 24451823 24451878 -177876469 + L2 LINE L2 3214 3313 0 1961 205 54 14 chr4 24452418 24452862 -177875485 - MLT1C LTR MaLR 0 467 6 892 203 53 25 chr4 24454217 24454498 -177873849 - L1MC5 LINE L1 -363 7598 7310 309 240 0 0 chr4 24454498 24454594 -177873753 + CT-rich Low_complexity Low_complexity 2 97 0 430 261 63 9 chr4 24457962 24458073 -177870274 + MIR SINE MIR 30 146 -62 569 275 64 34 chr4 24458368 24458664 -177869683 - MLT1L LTR MaLR -2 613 225 22 0 0 0 chr4 24459065 24459087 -177869260 + AT_rich Low_complexity Low_complexity 1 22 0 225 296 34 54 chr4 24459433 24459493 -177868854 - MIR SINE MIR -3 259 199 1483 202 10 3 chr4 24459493 24459785 -177868562 - AluJb SINE Alu -18 294 1 225 296 34 54 chr4 24459785 24459915 -177868432 - MIR SINE MIR -63 199 12 290 294 157 0 chr4 24459948 24460050 -177868297 - L2 LINE L2 -2 3270 3153 664 185 23 0 chr4 24460308 24460438 -177867909 + L1M4c LINE L1 2400 2532 -4317 * 3243 259 28 9 chr4 24460409 24461409 -177866938 + L1M4c LINE L1 2754 3776 -3072 2561 164 5 87 chr4 24461843 24462409 -177865938 + MLT2B1 LTR ERVL 1 520 0 537 312 19 13 chr4 24462413 24462567 -177865780 + MIR SINE MIR 24 178 -84 238 253 24 85 chr4 24463021 24463195 -177865152 - MIR3 SINE MIR -75 133 2 556 234 5 93 chr4 24463349 24463554 -177864793 + MIR SINE MIR 4 190 -72 517 250 129 21 chr4 24463557 24463697 -177864650 + MER5A DNA MER1_type 32 186 -3 300 219 14 55 chr4 24463703 24463776 -177864571 + MIR SINE MIR 193 262 0 227 371 0 11 chr4 24463908 24463997 -177864350 + L2 LINE L2 3221 3308 -5 468 51 0 0 chr4 24464695 24464754 -177863593 + (CAT)n Simple_repeat Simple_repeat 2 60 0 493 322 28 16 chr4 24464756 24464972 -177863375 - MIR SINE MIR -13 249 33 816 266 136 51 chr4 24465949 24466419 -177861928 + MLT1J LTR MaLR 1 510 -1 336 200 80 0 chr4 24466421 24466496 -177861851 - MER117 DNA MER1_type -113 84 4 270 274 77 51 chr4 24466525 24466642 -177861705 + L2 LINE L2 3153 3272 0 1027 216 134 20 chr4 24466834 24467088 -177861259 + MLT1C LTR MaLR 185 467 0 244 353 144 7 chr4 24467468 24467607 -177860740 - MER5A DNA MER1_type -23 166 9 288 0 0 0 chr4 24468021 24468053 -177860294 + (CA)n Simple_repeat Simple_repeat 2 33 0 418 150 110 20 chr4 24468368 24468468 -177859879 + MLT1B-int LTR MaLR 1262 1370 -1 900 175 26 0 chr4 24468472 24468626 -177859721 + MLT1B LTR MaLR 6 163 -227 290 317 183 24 chr4 24468907 24469235 -177859112 + L2 LINE L2 2385 2764 -550 406 259 27 0 chr4 24469983 24470088 -177858259 + MIR SINE MIR 29 139 -95 303 133 0 0 chr4 24470662 24470707 -177857640 + Alu SINE Alu 3 47 -255 460 296 75 5 chr4 24470882 24471068 -177857279 + MLT1L LTR MaLR 413 611 -4 2096 95 87 38 chr4 24471254 24471601 -177856746 + THE1B LTR MaLR 1 364 0 619 277 43 0 chr4 24471601 24471785 -177856562 + MIR3 SINE MIR 7 198 -10 196 247 210 0 chr4 24472200 24472281 -177856066 + MIR SINE MIR 158 255 -7 589 308 112 58 chr4 24472830 24473431 -177854916 + L2 LINE L2 2624 3272 0 415 333 41 7 chr4 24474364 24474511 -177853836 - MIR3 SINE MIR -5 203 52 235 277 0 109 chr4 24474603 24474722 -177853625 + L2 LINE L2 2932 3037 -235 796 181 52 7 chr4 24476287 24476442 -177851905 - MIR SINE MIR -61 201 40 337 252 44 52 chr4 24476616 24476751 -177851596 + L2 LINE L2 3179 3312 -1 483 101 0 0 chr4 24476850 24476929 -177851418 + (TG)n Simple_repeat Simple_repeat 2 80 0 243 258 56 22 chr4 24477590 24477679 -177850668 - MIR3 SINE MIR -23 185 94 680 266 62 37 chr4 24478725 24478969 -177849378 + MIR SINE MIR 5 254 -8 24 39 0 0 chr4 24480054 24480080 -177848267 + AT_rich Low_complexity Low_complexity 1 26 0 577 304 88 34 chr4 24481906 24482294 -177846053 + MLT1L LTR MaLR 196 604 -11 246 180 56 101 chr4 24482295 24482384 -177845963 - MLT1J2 LTR MaLR -1 449 365 285 323 120 0 chr4 24482457 24482590 -177845757 - MLT1J2 LTR MaLR -238 212 64 333 214 56 11 chr4 24482756 24482845 -177845502 + L1ME3A LINE L1 6078 6170 0 1694 175 3 14 chr4 24482849 24483146 -177845201 + AluJo SINE Alu 1 294 -18 2052 201 29 12 chr4 24483286 24483705 -177844642 - MSTB LTR MaLR 0 426 1 520 218 26 26 chr4 24484287 24484443 -177843904 + MER103 DNA DNA 1 156 -10 262 305 85 25 chr4 24484532 24484650 -177843697 + MIR3 SINE MIR 30 154 -54 275 184 26 79 chr4 24484764 24484840 -177843507 + MLT1L LTR MaLR 1 72 -543 210 118 0 0 chr4 24485351 24485385 -177842962 + (GGGA)n Simple_repeat Simple_repeat 1 34 0 265 275 22 0 chr4 24487490 24487581 -177840766 + (TG)n Simple_repeat Simple_repeat 2 94 0 294 206 309 0 chr4 24487951 24488048 -177840299 + L2 LINE L2 3146 3272 0 479 270 137 17 chr4 24489460 24489760 -177838587 - L2 LINE L2 -169 3144 2809 343 191 16 0 chr4 24490048 24490111 -177838236 - MLT1J2 LTR MaLR -44 406 343 383 238 81 64 chr4 24490157 24490329 -177838018 - MLT1J2 LTR MaLR 0 450 276 352 284 95 34 chr4 24490455 24490603 -177837744 - MIR SINE MIR -71 191 35 447 268 14 49 chr4 24491519 24491661 -177836686 + MIR SINE MIR 123 259 -3 847 279 167 35 chr4 24492902 24493185 -177835162 + L2 LINE L2 2853 3206 -107 2926 118 12 2 chr4 24493185 24493608 -177834739 + MSTA LTR MaLR 1 427 -1 847 279 167 35 chr4 24493608 24493726 -177834621 + L2 LINE L2 3206 3307 -6 267 79 0 0 chr4 24493816 24493854 -177834493 + (CA)n Simple_repeat Simple_repeat 1 38 0 24 0 0 0 chr4 24494009 24494033 -177834314 + AT_rich Low_complexity Low_complexity 1 24 0 33 0 0 0 chr4 24494556 24494589 -177833758 + AT_rich Low_complexity Low_complexity 1 33 0 2029 174 34 11 chr4 24495160 24495510 -177832837 - MLT1A1 LTR MaLR -7 358 1 351 294 238 0 chr4 24495511 24495654 -177832693 - MER5A DNA MER1_type 0 189 13 532 267 82 67 chr4 24496048 24496303 -177832044 + MIR SINE MIR 3 261 -1 2509 250 15 10 chr4 24496590 24497198 -177831149 + L1ME2 LINE L1 5483 6093 -71 249 221 137 11 chr4 24497325 24497420 -177830927 + L1MC4 LINE L1 7924 8030 -12 493 304 38 71 chr4 24497483 24497987 -177830360 + L2 LINE L2 2791 3272 0 210 37 0 0 chr4 24498081 24498108 -177830239 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 383 216 0 0 chr4 24498428 24498502 -177829845 - MIR SINE MIR -68 140 67 257 307 57 11 chr4 24498555 24498643 -177829704 - L2 LINE L2 -29 3243 3152 1166 250 156 9 chr4 24498704 24499044 -177829303 - LTR16C LTR ERVL -2 489 100 218 341 0 12 chr4 24499734 24499816 -177828531 - L2 LINE L2 0 3272 3192 378 134 0 0 chr4 24499932 24499999 -177828348 + L1MC2 LINE L1 6277 6343 -1 25 0 0 0 chr4 24500021 24500046 -177828301 + AT_rich Low_complexity Low_complexity 1 25 0 733 232 41 14 chr4 24500806 24501024 -177827323 + MER63C DNA MER1_type 5 228 -702 1758 120 55 118 chr4 24501024 24501424 -177826923 - THE1C LTR MaLR 0 375 1 1433 244 47 12 chr4 24501424 24502072 -177826275 + MER63C DNA MER1_type 224 930 0 214 328 0 0 chr4 24502075 24502133 -177826214 - MIR SINE MIR -157 105 48 382 359 99 36 chr4 24502623 24503085 -177825262 + L1MEd LINE L1 3 493 -5626 * 504 263 134 0 chr4 24503060 24503239 -177825108 + HAL1 LINE L1 1555 1757 -733 351 109 36 0 chr4 24503272 24503327 -177825020 - THE1C LTR MaLR 0 375 319 208 312 21 21 chr4 24504708 24504801 -177823546 - MIR SINE MIR -74 188 96 963 276 91 16 chr4 24504832 24505263 -177823084 - LTR16B LTR ERVL -1 463 1 189 74 0 0 chr4 24505269 24505296 -177823051 + (TC)n Simple_repeat Simple_repeat 1 27 0 1634 103 126 8 chr4 24505582 24505845 -177822502 + AluSg1 SINE Alu 1 294 -15 1343 146 139 38 chr4 24506303 24506590 -177821757 + THE1C LTR MaLR 60 375 0 346 285 201 35 chr4 24507173 24507317 -177821030 + MIR SINE MIR 53 220 -42 197 297 109 0 chr4 24507512 24507576 -177820771 - MIR3 SINE MIR -6 202 132 2163 170 10 31 chr4 24507608 24508025 -177820322 - MLT2D LTR ERVL -6 408 1 185 294 153 0 chr4 24508301 24508386 -177819961 + L2 LINE L2 3144 3241 -31 455 201 250 7 chr4 24509100 24509244 -177819103 + MIR3 SINE MIR 16 194 -14 512 268 52 20 chr4 24509863 24510016 -177818331 - MIR SINE MIR 0 262 105 681 231 115 60 chr4 24510029 24510493 -177817854 - LTR33A LTR ERVL -2 521 8 613 262 92 0 chr4 24511028 24511234 -177817113 - LTR16C LTR ERVL -2 489 265 204 206 64 19 chr4 24512600 24512678 -177815669 + MIR SINE MIR 61 135 -73 392 293 16 8 chr4 24513320 24513443 -177814904 + MIR SINE MIR 20 143 -65 868 258 77 14 chr4 24514535 24514756 -177813591 - MIR SINE MIR -21 241 7 194 383 56 0 chr4 24516226 24516333 -177812014 - L2 LINE L2 -19 3253 3141 305 265 21 21 chr4 24516530 24516676 -177811671 - HERVL68 LTR ERVL -257 2780 2723 370 207 48 53 chr4 24517021 24517156 -177811191 + LTR33 LTR ERVL 105 240 -281 405 305 28 0 chr4 24517184 24517325 -177811022 + LTR33 LTR ERVL 327 471 -50 738 200 9 4 chr4 24517494 24517732 -177810615 + (CAT)n Simple_repeat Simple_repeat 1 239 0 322 325 0 25 chr4 24517734 24517854 -177810493 + (CACCAT)n Simple_repeat Simple_repeat 6 122 0 543 288 13 7 chr4 24517938 24518091 -177810256 - MIR SINE MIR -1 261 108 255 356 148 0 chr4 24519399 24519500 -177808847 - MIR SINE MIR -74 134 19 211 389 33 0 chr4 24520099 24520189 -177808158 + MIR SINE MIR 89 181 -81 554 233 49 12 chr4 24520387 24520728 -177807619 + MLT1G3 LTR MaLR 153 595 0 188 237 0 0 chr4 24520746 24520784 -177807563 + L2 LINE L2 3198 3235 -37 333 314 65 16 chr4 24520998 24521122 -177807225 - MIR SINE MIR -37 225 96 303 257 10 69 chr4 24521553 24521654 -177806693 + MER106B DNA MER1_type 9 103 -956 * 432 162 90 27 chr4 24521650 24521761 -177806586 + MER106B DNA MER1_type 942 1059 0 244 315 105 11 chr4 24522992 24523173 -177805174 + MIR SINE MIR 36 233 -29 270 233 78 65 chr4 24524316 24524608 -177803739 + L1ME3A LINE L1 5606 5952 -218 202 281 18 0 chr4 24525205 24525262 -177803085 + GA-rich Low_complexity Low_complexity 1 58 0 210 188 20 79 chr4 24525281 24525382 -177802965 + (CAGAGA)n Simple_repeat Simple_repeat 2 96 0 290 135 0 54 chr4 24525572 24525646 -177802701 + L1MA8 LINE L1 6218 6287 -4 189 0 0 0 chr4 24525766 24525787 -177802560 + (GA)n Simple_repeat Simple_repeat 1 21 0 240 273 30 76 chr4 24525963 24526095 -177802252 - MIR3 SINE MIR 0 208 83 304 159 302 0 chr4 24526511 24526574 -177801773 + MER20 DNA MER1_type 1 82 -137 337 240 168 24 chr4 24527601 24527726 -177800621 + MIR SINE MIR 20 162 -100 230 185 74 37 chr4 24528533 24528587 -177799760 - MLT1A2 LTR MaLR 0 428 373 1035 127 0 4 chr4 24528593 24528836 -177799511 + (TA)n Simple_repeat Simple_repeat 2 243 0 523 147 35 86 chr4 24529281 24529397 -177798950 + MER81 DNA DNA 1 110 -4 235 0 0 54 chr4 24529950 24529987 -177798360 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 374 323 36 55 chr4 24530842 24531062 -177797285 - L1MC4 LINE L1 -1 8041 7826 3476 222 85 25 chr4 24531120 24533079 -177795268 - L1ME2 LINE L1 -23 6141 4063 641 180 94 144 chr4 24533084 24533340 -177795007 + LTR40a LTR ERVL 6 248 -271 1022 188 21 59 chr4 24533352 24533533 -177794814 - MLT1A2 LTR MaLR -144 230 59 2137 131 48 31 chr4 24533533 24533891 -177794456 - THE1B LTR MaLR 0 364 1 1022 188 21 59 chr4 24533891 24533948 -177794399 - MLT1A2 LTR MaLR -315 59 1 1764 244 102 7 chr4 24533963 24534540 -177793807 - L1ME2 LINE L1 -2567 3579 2948 306 0 0 0 chr4 24535401 24535435 -177792912 + (CA)n Simple_repeat Simple_repeat 2 35 0 249 83 0 0 chr4 24535485 24535521 -177792826 + (CA)n Simple_repeat Simple_repeat 1 36 0 207 69 0 0 chr4 24535565 24535594 -177792753 + (CA)n Simple_repeat Simple_repeat 2 30 0 412 164 0 0 chr4 24535666 24535727 -177792620 - MER5B DNA MER1_type -5 173 113 2558 248 53 18 chr4 24535727 24536542 -177791805 + L1ME3A LINE L1 5328 6170 0 401 268 49 24 chr4 24536542 24536665 -177791682 - MER5B DNA MER1_type -48 130 5 371 299 51 65 chr4 24536686 24536903 -177791444 + MIR SINE MIR 34 247 -15 363 311 80 0 chr4 24537677 24537828 -177790519 + MIR3 SINE MIR 30 192 -16 276 278 185 0 chr4 24539926 24540034 -177788313 - MLT1L LTR MaLR 0 615 488 * 348 253 0 22 chr4 24540027 24540118 -177788229 - MLT1H1 LTR MaLR -444 111 23 277 233 0 0 chr4 24540137 24540197 -177788150 + MLT1H LTR MaLR 477 536 -13 182 295 123 57 chr4 24540860 24540982 -177787365 - L2 LINE L2 -7 3265 3136 450 267 30 0 chr4 24541035 24541136 -177787211 - L2 LINE L2 -10 3303 3200 770 300 99 0 chr4 24541325 24541618 -177786729 + LTR16C LTR ERVL 139 460 -31 22 80 0 0 chr4 24542678 24542728 -177785619 + AT_rich Low_complexity Low_complexity 1 50 0 1815 97 0 50 chr4 24542910 24543244 -177785103 + AluSx SINE Alu 1 319 0 1379 245 34 58 chr4 24543249 24543661 -177784686 + MLT1J LTR MaLR 110 511 0 704 257 68 42 chr4 24543663 24543974 -177784373 + MER102b DNA MER1_type 23 341 0 252 365 9 19 chr4 24544201 24544308 -177784039 - MIR SINE MIR -68 140 35 216 0 0 0 chr4 24544388 24544412 -177783935 + (A)n Simple_repeat Simple_repeat 1 24 0 243 264 14 42 chr4 24544620 24544692 -177783655 + L2 LINE L2 3231 3300 -13 180 0 0 0 chr4 24544692 24544712 -177783635 + (TGAA)n Simple_repeat Simple_repeat 1 20 0 1017 254 44 84 chr4 24546514 24546920 -177781427 + LTR16B LTR ERVL 1 390 -74 254 236 364 0 chr4 24547119 24547229 -177781118 - L2 LINE L2 -370 2944 2795 295 317 17 17 chr4 24547502 24547622 -177780725 + MIR SINE MIR 35 154 -108 310 279 0 0 chr4 24547632 24547700 -177780647 - MIR SINE MIR -1 261 194 525 310 14 8 chr4 24547953 24548103 -177780244 - MIR SINE MIR -63 145 17 478 316 26 7 chr4 24548253 24548405 -177779942 - L2 LINE L2 0 3272 3118 207 324 15 0 chr4 24548933 24549001 -177779346 + MIR SINE MIR 194 262 0 395 276 29 9 chr4 24550264 24550410 -177777937 - MIR SINE MIR -63 145 12 423 0 0 0 chr4 24550491 24550538 -177777809 + (CA)n Simple_repeat Simple_repeat 1 47 0 224 218 36 18 chr4 24550702 24550757 -177777590 - L2 LINE L2 -25 3247 3192 220 330 77 0 chr4 24551161 24551252 -177777095 + L2 LINE L2 3202 3299 -14 267 103 0 0 chr4 24551252 24551291 -177777056 + (TGAA)n Simple_repeat Simple_repeat 4 42 0 281 328 12 20 chr4 24551959 24552108 -177776239 + GA-rich Low_complexity Low_complexity 4 242 0 204 146 0 24 chr4 24552709 24552750 -177775597 + (TG)n Simple_repeat Simple_repeat 2 41 0 198 91 0 0 chr4 24552949 24552982 -177775365 + (CA)n Simple_repeat Simple_repeat 2 34 0 2422 155 57 88 chr4 24553454 24554088 -177774259 + LTR18B LTR ERVL 1 614 0 315 291 45 18 chr4 24554196 24554306 -177774041 + MIR SINE MIR 77 189 -73 543 333 108 11 chr4 24554430 24554781 -177773566 + L3 LINE CR1 1128 1512 -65 1071 269 166 9 chr4 24555283 24555314 -177773033 + LTR33A LTR ERVL 1 26 -497 1495 194 10 102 chr4 24555314 24555716 -177772631 - MLT1A1 LTR MaLR 0 365 1 1071 269 166 9 chr4 24555716 24556123 -177772224 + LTR33A LTR ERVL 26 508 -15 189 234 0 0 chr4 24557114 24557178 -177771169 + (CCA)n Simple_repeat Simple_repeat 1 64 0 2221 102 3 0 chr4 24557495 24557788 -177770559 - AluSq SINE Alu -19 294 1 559 270 78 64 chr4 24557965 24558432 -177769915 - LTR33A LTR ERVL -17 506 20 282 349 110 26 chr4 24558577 24559030 -177769317 - L2 LINE L2 -453 2861 2371 1985 181 53 68 chr4 24559829 24560303 -177768044 - MLT1C LTR MaLR 0 467 1 1303 188 14 137 chr4 24560565 24560981 -177767366 - MLT1A1 LTR MaLR 0 365 1 517 259 41 35 chr4 24561055 24561225 -177767122 - MIR3 SINE MIR -7 201 31 277 279 154 37 chr4 24561814 24561950 -177766397 - MIR3 SINE MIR -6 202 51 2168 222 76 27 chr4 24562018 24562571 -177765776 + MLT1E LTR MaLR 1 580 -13 910 188 47 60 chr4 24562695 24562929 -177765418 - MIR SINE MIR -1 261 31 485 219 118 22 chr4 24563043 24563221 -177765126 + MIR SINE MIR 63 257 -5 6107 49 1 23 chr4 24563490 24564227 -177764120 - L1PA3 LINE L1 -3 6152 5432 683 251 11 38 chr4 24564229 24564412 -177763935 - MER5B DNA MER1_type 0 178 1 220 214 0 0 chr4 24564721 24564763 -177763584 + CT-rich Low_complexity Low_complexity 1 42 0 373 221 55 24 chr4 24564893 24565020 -177763327 - HAL1b LINE L1 -887 461 331 239 291 57 7 chr4 24565188 24565329 -177763018 - L1MEd LINE L1 -5002 1117 970 2194 139 67 14 chr4 24565513 24565859 -177762488 + THE1B LTR MaLR 1 364 0 21 0 0 0 chr4 24566338 24566359 -177761988 + AT_rich Low_complexity Low_complexity 1 21 0 5604 134 12 22 chr4 24566359 24567339 -177761008 - L1MA4A LINE L1 0 6303 5197 2546 111 3 37 chr4 24567440 24567817 -177760530 - THE1B LTR MaLR 0 364 1 24 0 0 0 chr4 24568155 24568179 -177760168 + AT_rich Low_complexity Low_complexity 1 24 0 311 272 25 0 chr4 24569172 24569253 -177759094 - MIR3 SINE MIR -6 202 120 1846 124 0 8 chr4 24570041 24570306 -177758041 - AluSg SINE Alu -8 302 40 1671 300 34 11 chr4 24570962 24571495 -177756852 + HERVL40 LTR ERVL 3301 3845 -1685 2320 251 54 18 chr4 24571500 24572113 -177756234 + HERVL40 LTR ERVL 3946 4580 -950 232 242 11 32 chr4 24572159 24572254 -177756093 + T-rich Low_complexity Low_complexity 2 94 0 192 250 91 0 chr4 24573027 24573071 -177755276 + MIR SINE MIR 123 170 -92 224 240 40 13 chr4 24573603 24573678 -177754669 + CT-rich Low_complexity Low_complexity 3 79 0 1286 100 0 6 chr4 24573903 24574083 -177754264 - L1P4 LINE L1 -391 5772 5594 413 345 6 18 chr4 24574589 24574760 -177753587 + GA-rich Low_complexity Low_complexity 6 174 0 192 250 91 0 chr4 24575889 24575933 -177752414 + MIR SINE MIR 123 170 -92 255 229 14 29 chr4 24576465 24576535 -177751812 + CT-rich Low_complexity Low_complexity 1 69 0 384 232 89 27 chr4 24577163 24577275 -177751072 + MER115 DNA AcHobo 489 607 -86 229 274 28 28 chr4 24577295 24577401 -177750946 - L1MC5 LINE L1 -809 7152 7047 637 239 50 25 chr4 24577488 24577726 -177750621 - L1M4 LINE L1 -3724 2422 2179 1198 193 9 21 chr4 24577759 24577992 -177750355 - AluJo SINE Alu -25 287 58 337 197 40 0 chr4 24577993 24578069 -177750278 + Zaphod DNA AcHobo 3953 4031 0 1373 161 49 176 chr4 24578654 24579189 -177749158 + MLT1C LTR MaLR 1 467 0 378 278 154 6 chr4 24580166 24580335 -177748012 + MIR SINE MIR 11 204 -58 230 328 78 16 chr4 24581057 24581185 -177747162 - L2 LINE L2 -5 3267 3132 1618 202 29 61 chr4 24581216 24581626 -177746721 - MLT2C1 LTR ERVL 0 397 1 232 281 22 0 chr4 24582088 24582177 -177746170 + (TA)n Simple_repeat Simple_repeat 1 91 0 376 277 50 7 chr4 24582189 24582330 -177746017 + MER103 DNA DNA 14 160 -6 220 264 44 66 chr4 24582487 24582578 -177745769 - L3 LINE CR1 -17 1560 1472 1320 165 19 30 chr4 24582918 24583184 -177745163 - L1MA9 LINE L1 -114 6198 5936 * 5790 99 4 14 chr4 24583177 24583659 -177744688 - L1PA13 LINE L1 -2 6161 5690 2077 141 3 0 chr4 24583659 24583965 -177744382 - AluSx SINE Alu -5 307 1 5790 99 4 14 chr4 24583965 24584319 -177744028 - L1PA13 LINE L1 -473 5690 5334 1628 152 11 7 chr4 24584316 24584593 -177743754 - L1MA9 LINE L1 -392 5920 5643 * 4621 40 0 0 chr4 24584633 24585157 -177743190 - L1PA4 LINE L1 -3 6152 5629 567 281 64 82 chr4 24585162 24585554 -177742793 + L2 LINE L2 2929 3313 0 2713 121 6 6 chr4 24586728 24587092 -177741255 + THE1B LTR MaLR 1 364 0 607 326 74 18 chr4 24587122 24587515 -177740832 + L2 LINE L2 2187 2601 -713 1620 189 99 19 chr4 24587950 24588272 -177740075 - MER7A DNA MER2_type 0 346 1 663 279 74 10 chr4 24588289 24588303 -177740044 + L1ME3A LINE L1 5634 5646 -524 1139 184 114 0 chr4 24588303 24588504 -177739843 + MER58A DNA MER1_type 1 224 0 663 279 74 10 chr4 24588504 24588787 -177739560 + L1ME3A LINE L1 5646 5950 -220 408 292 139 28 chr4 24588907 24589294 -177739053 - L1M4 LINE L1 -920 5226 4797 302 284 37 0 chr4 24589298 24589379 -177738968 + L2 LINE L2 2622 2705 -609 208 219 0 0 chr4 24589379 24589420 -177738927 + (TG)n Simple_repeat Simple_repeat 2 42 0 195 298 74 33 chr4 24589529 24589650 -177738697 - MIR SINE MIR -112 150 25 23 33 0 0 chr4 24589767 24589797 -177738550 + AT_rich Low_complexity Low_complexity 1 30 0 2381 71 7 23 chr4 24589840 24590150 -177738197 + L1PA10 LINE L1 5862 6166 -2 3279 164 47 16 chr4 24590409 24590983 -177737364 + MER6A DNA MER2_type 1 592 -13 850 206 181 36 chr4 24591432 24591708 -177736639 - LOR1a LTR ERV1 0 497 182 351 211 0 0 chr4 24591693 24591764 -177736583 - LOR1a LTR ERV1 -189 308 238 * 611 297 160 37 chr4 24591856 24592422 -177735925 + L2 LINE L2 2659 3276 -37 553 384 51 6 chr4 24592710 24593046 -177735301 + L2 LINE L2 2456 2806 -508 234 349 47 0 chr4 24593222 24593308 -177735039 + L2 LINE L2 2436 2525 -789 220 271 102 0 chr4 24593317 24593376 -177734971 - MIR SINE MIR -119 89 25 915 223 48 9 chr4 24593674 24593903 -177734444 - MIR SINE MIR -10 252 15 228 354 73 21 chr4 24594081 24594177 -177734170 + MIR SINE MIR 41 141 -67 21 0 0 0 chr4 24594199 24594220 -177734127 + AT_rich Low_complexity Low_complexity 1 21 0 370 343 55 17 chr4 24594483 24594719 -177733628 + MLT1K LTR MaLR 322 566 -22 399 332 69 22 chr4 24594819 24595096 -177733251 - L2 LINE L2 -469 2845 2556 1846 124 0 8 chr4 24595669 24595934 -177732413 - AluSg SINE Alu -8 302 40 21 57 0 0 chr4 24596283 24596318 -177732029 + AT_rich Low_complexity Low_complexity 1 35 0 553 213 44 0 chr4 24596420 24596556 -177731791 + MIR SINE MIR 120 261 -1 1412 288 93 36 chr4 24596996 24597927 -177730420 - L2 LINE L2 -10 3303 675 3419 110 23 6 chr4 24597927 24598410 -177729937 + LTR3b LTR ERVK 1 491 -9 395 119 0 75 chr4 24598410 24598477 -177729870 + LTR3b LTR ERVK 421 482 -18 * 508 125 0 0 chr4 24598453 24598525 -177729822 + LTR3b LTR ERVK 422 493 -7 1238 302 127 28 chr4 24598526 24599108 -177729239 - L2 LINE L2 -2633 681 42 2788 75 29 3 chr4 24599264 24599610 -177728737 - THE1A LTR MaLR 0 355 1 216 267 116 35 chr4 24599700 24599786 -177728561 - MIR SINE MIR -107 155 63 223 288 76 0 chr4 24599892 24599958 -177728389 + MIR SINE MIR 56 126 -136 927 234 154 46 chr4 24599965 24600336 -177728011 - LTR16B LTR ERVL -32 432 22 1731 230 42 14 chr4 24600404 24600637 -177727710 - L1MB5 LINE L1 0 6174 5942 421 279 31 49 chr4 24600637 24600838 -177727509 - L1MC4a LINE L1 -1879 5929 5731 1808 159 46 13 chr4 24600838 24601140 -177727207 - AluSx SINE Alu 0 312 1 421 279 31 49 chr4 24601140 24601164 -177727183 - L1MC4a LINE L1 -2077 5731 5708 213 154 0 0 chr4 24601433 24601472 -177726875 + T-rich Low_complexity Low_complexity 1 39 0 292 323 38 13 chr4 24601538 24601696 -177726651 + L3b LINE CR1 1304 1465 -118 466 291 135 22 chr4 24601978 24602208 -177726139 + MIR SINE MIR 5 260 -2 249 245 286 10 chr4 24602509 24602607 -177725740 + L2 LINE L2 3187 3311 -2 249 277 36 121 chr4 24602863 24603029 -177725318 - MLT1J LTR MaLR -204 307 156 207 162 0 0 chr4 24603069 24603106 -177725241 + CT-rich Low_complexity Low_complexity 3 39 0 218 158 0 123 chr4 24603199 24603256 -177725091 - MIR SINE MIR -56 152 106 2053 121 3 3 chr4 24603533 24603823 -177724524 - AluSx SINE Alu -22 290 1 849 211 6 22 chr4 24604051 24604231 -177724116 + MER5B DNA MER1_type 1 177 -1 292 296 31 0 chr4 24604820 24604918 -177723429 - MER102b DNA MER1_type -9 332 232 1122 162 17 0 chr4 24605523 24605696 -177722651 - L1PB1 LINE L1 0 6151 5976 2229 116 0 3 chr4 24606404 24606707 -177721640 + AluSq SINE Alu 1 302 -11 4954 60 4 0 chr4 24606960 24607780 -177720567 - L1PA7 LINE L1 -302 5852 5031 212 307 39 39 chr4 24607792 24607919 -177720428 + MIR3 SINE MIR 54 180 -28 661 87 0 0 chr4 24658366 24658458 -177669889 + THE1B LTR MaLR 273 364 0 6718 108 48 48 chr4 24658458 24659584 -177668763 + THE1B-int LTR MaLR 1 1126 -454 820 88 0 0 chr4 24659684 24659786 -177668561 - AluJ/FLAM SINE Alu -210 102 1 186 103 0 0 chr4 24662144 24662173 -177666174 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 486 268 0 24 chr4 24663998 24664125 -177664222 - MLT1K LTR MaLR -349 239 116 1801 65 0 4 chr4 24664291 24664520 -177663827 + AluY SINE Alu 1 228 -83 305 311 89 0 chr4 24664601 24664714 -177663633 + MIR SINE MIR 22 143 -65 24 0 0 0 chr4 24664793 24664817 -177663530 + AT_rich Low_complexity Low_complexity 1 24 0 686 303 52 35 chr4 24664820 24665247 -177663100 - LTR33 LTR ERVL -2 519 9 1522 144 60 4 chr4 24665251 24665501 -177662846 + AluSx SINE Alu 1 264 -48 1015 63 0 0 chr4 24665868 24665995 -177662352 + AluY SINE Alu 184 310 -1 2195 84 0 3 chr4 24666502 24666786 -177661561 - AluSx SINE Alu -7 305 23 709 270 35 5 chr4 24667741 24667941 -177660406 - MER63A DNA MER1_type -4 206 1 27 0 0 0 chr4 24668388 24668415 -177659932 + AT_rich Low_complexity Low_complexity 1 27 0 2257 121 0 0 chr4 24668602 24668909 -177659438 + AluSx SINE Alu 1 307 -5 589 236 14 40 chr4 24669054 24669202 -177659145 - MIR SINE MIR -111 151 8 268 291 97 29 chr4 24669325 24669531 -177658816 + L1ME LINE L1 5677 5896 -274 310 239 39 46 chr4 24669691 24669821 -177658526 + Charlie4 DNA MER1_type 1831 1959 -2 423 321 123 14 chr4 24669968 24670180 -177658167 - MIR SINE MIR -3 259 25 741 297 62 58 chr4 24670336 24670433 -177657914 + LTR33 LTR ERVL 1 96 -425 2288 96 0 3 chr4 24670433 24670725 -177657622 + AluSg SINE Alu 1 291 -19 741 297 62 58 chr4 24670725 24671146 -177657201 + LTR33 LTR ERVL 96 521 0 810 228 5 138 chr4 24671651 24672041 -177656306 - MLT1A1 LTR MaLR -9 356 19 208 421 95 0 chr4 24672226 24672447 -177655900 - L2 LINE L2 -841 2473 2232 413 83 0 0 chr4 24673410 24673470 -177654877 - Alu SINE Alu -251 60 1 1365 205 36 8 chr4 24673470 24673861 -177654486 + MER113 DNA MER1_type? 73 474 -47 199 333 0 0 chr4 24674769 24674841 -177653506 - MIR SINE MIR -12 250 179 205 300 0 17 chr4 24675451 24675511 -177652836 + L3 LINE CR1 1518 1576 -1 415 358 52 0 chr4 24676032 24676166 -177652181 - L3 LINE CR1 -3 1574 1434 1989 162 26 0 chr4 24676830 24677169 -177651178 + MER7A DNA MER2_type 1 346 0 1752 210 21 59 chr4 24678248 24678719 -177649628 + MLT2B1 LTR ERVL 1 453 -67 232 171 0 0 chr4 24678770 24678811 -177649536 + MLT2B1 LTR ERVL 514 554 0 203 233 0 23 chr4 24678872 24678915 -177649432 + L2 LINE L2 3214 3255 -17 322 327 19 10 chr4 24679835 24679939 -177648408 + MIR SINE MIR 41 145 -63 230 290 16 0 chr4 24680183 24680245 -177648102 - MIR SINE MIR -109 153 91 * 795 283 120 33 chr4 24680235 24680627 -177647720 + L2 LINE L2 2882 3307 -6 442 290 34 34 chr4 24680929 24681105 -177647242 + MER5B DNA MER1_type 3 178 0 418 362 181 0 chr4 24681514 24681746 -177646601 - L2 LINE L2 -10 3262 2989 7894 188 30 33 chr4 24681773 24684307 -177644040 + L1PA15-16 LINE L1 1 2303 -4546 1861 99 7 0 chr4 24684308 24684591 -177643756 + L1P4 LINE L1 5406 5690 -476 700 190 19 102 chr4 24684751 24684967 -177643380 - MER58C DNA MER1_type -16 199 2 181 132 132 0 chr4 24685029 24685067 -177643280 - L2 LINE L2 0 3272 3230 325 283 10 30 chr4 24685758 24685857 -177642490 + MIR SINE MIR 46 142 -120 438 129 53 18 chr4 24685994 24686165 -177642182 + (TA)n Simple_repeat Simple_repeat 2 178 0 181 57 57 0 chr4 24686177 24686212 -177642135 + (TA)n Simple_repeat Simple_repeat 1 37 0 300 160 217 75 chr4 24686795 24686901 -177641446 - MIR3 SINE MIR -6 202 82 257 289 117 107 chr4 24686955 24687263 -177641084 - L2 LINE L2 -19 3253 2943 201 258 30 0 chr4 24688936 24689002 -177639345 + (CAA)n Simple_repeat Simple_repeat 2 69 0 377 305 149 50 chr4 24689253 24689574 -177638773 - L2 LINE L2 -5 3267 2915 275 241 181 0 chr4 24689604 24689687 -177638660 - L3 LINE CR1 -584 993 896 505 257 56 0 chr4 24690931 24691075 -177637272 - MIR SINE MIR -70 192 41 207 305 85 76 chr4 24691465 24691583 -177636764 - L2 LINE L2 -10 3262 3144 1794 219 47 7 chr4 24692218 24692662 -177635685 + MLT1C LTR MaLR 6 467 0 247 218 73 0 chr4 24693202 24693257 -177635090 - L2 LINE L2 0 3272 3214 270 222 42 0 chr4 24694323 24694395 -177633952 - HERVL40 LTR ERVL -1510 4020 3946 4025 286 59 6 chr4 24694400 24695657 -177632690 - HERVL40 LTR ERVL -1685 3845 2522 2607 280 36 47 chr4 24695656 24696394 -177631953 - HERVL40 LTR ERVL -3919 1611 887 * 186 43 0 0 chr4 24696394 24696417 -177631930 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 2607 280 36 47 chr4 24696417 24696736 -177631611 - HERVL40 LTR ERVL -4643 887 566 548 260 27 130 chr4 24696776 24697145 -177631202 - HERVL40 LTR ERVL -4960 570 240 417 286 143 19 chr4 24697160 24697370 -177630977 - L2 LINE L2 0 3313 3078 201 202 12 36 chr4 24697370 24697454 -177630893 + GA-rich Low_complexity Low_complexity 2 83 0 322 284 37 0 chr4 24697640 24697721 -177630626 + L2 LINE L2 3229 3312 -1 1171 304 64 53 chr4 24698123 24698853 -177629494 - L3 LINE CR1 -206 1371 634 26 0 0 0 chr4 24698930 24698956 -177629391 + AT_rich Low_complexity Low_complexity 1 26 0 418 307 14 7 chr4 24699273 24699413 -177628934 - L2 LINE L2 -4 3309 3169 220 347 11 0 chr4 24699414 24699509 -177628838 + (TATG)n Simple_repeat Simple_repeat 4 99 0 1689 290 135 7 chr4 24699522 24700128 -177628219 + L2 LINE L2 1148 1831 -1483 2314 111 40 3 chr4 24700412 24700763 -177627584 + THE1B LTR MaLR 1 364 0 1466 264 66 39 chr4 24700775 24701322 -177627025 - L1ME3 LINE L1 -208 5954 5361 2248 63 45 0 chr4 24701322 24701609 -177626738 - AluY SINE Alu -11 300 1 1466 264 66 39 chr4 24701609 24702058 -177626289 - L1ME3 LINE L1 -801 5361 4925 830 280 89 25 chr4 24702060 24702385 -177625962 + L2 LINE L2 2968 3313 0 49 43 0 0 chr4 24702522 24702592 -177625755 + AT_rich Low_complexity Low_complexity 1 70 0 304 312 92 9 chr4 24702638 24702747 -177625600 - L2 LINE L2 -1 3271 3154 332 290 138 22 chr4 24703153 24703291 -177625056 - MIR SINE MIR -96 166 13 322 358 24 8 chr4 24703324 24703447 -177624900 - L2 LINE L2 0 3272 3148 542 315 19 6 chr4 24704059 24704221 -177624126 + MIR SINE MIR 74 237 -25 578 121 0 10 chr4 24704268 24704367 -177623980 + (GGAA)n Simple_repeat Simple_repeat 3 100 0 216 277 15 0 chr4 24705452 24705517 -177622830 + (TATATG)n Simple_repeat Simple_repeat 6 71 0 1592 251 105 16 chr4 24705825 24706319 -177622028 - MLT1F LTR MaLR -2 540 3 250 335 160 19 chr4 24706476 24706682 -177621665 - MLT1L LTR MaLR -13 602 368 257 346 71 16 chr4 24707268 24707395 -177620952 + L2 LINE L2 3136 3269 -3 436 271 54 77 chr4 24707630 24707781 -177620566 + MIR SINE MIR 47 193 -69 2304 163 34 17 chr4 24707781 24708199 -177620148 - MSTA LTR MaLR 0 428 4 436 271 54 77 chr4 24708199 24708268 -177620079 + MIR SINE MIR 193 262 0 387 327 0 0 chr4 24708432 24708542 -177619805 + MIR SINE MIR 3 112 -150 1148 255 44 5 chr4 24708542 24708922 -177619425 - MLT1E LTR MaLR 0 593 105 230 308 225 0 chr4 24709059 24709179 -177619168 + MIR SINE MIR 109 255 -7 258 363 47 19 chr4 24710049 24710264 -177618083 + L1ME2 LINE L1 92 312 -6084 912 236 27 95 chr4 24710922 24711116 -177617231 + L1ME2 LINE L1 666 872 -5346 2258 107 0 19 chr4 24711116 24711425 -177616922 + AluSg SINE Alu 1 303 -7 912 236 27 95 chr4 24711425 24711786 -177616561 + L1ME2 LINE L1 872 1181 -5037 4927 277 69 47 chr4 24711814 24715088 -177613259 + L1ME2 LINE L1 1220 4721 -1494 1488 252 50 52 chr4 24715105 24715889 -177612458 + L1ME2 LINE L1 5099 5903 -330 311 275 84 78 chr4 24715898 24716040 -177612307 - MLT1E LTR MaLR -399 143 1 228 284 37 12 chr4 24717166 24717247 -177611100 - MIR SINE MIR -4 258 176 255 326 112 41 chr4 24717447 24717643 -177610704 + LTR33 LTR ERVL 304 513 -8 485 304 68 0 chr4 24717644 24717805 -177610542 - MIR SINE MIR -79 183 12 256 213 0 0 chr4 24718260 24718307 -177610040 + MIR SINE MIR 73 119 -143 192 323 156 0 chr4 24718315 24718411 -177609936 + L2 LINE L2 3203 3313 0 1708 188 119 12 chr4 24718420 24718841 -177609506 - L1MC3 LINE L1 -1 7784 7319 1848 143 176 20 chr4 24718881 24719272 -177609075 + LTR10A LTR ERV1 97 548 -61 472 202 153 0 chr4 24719288 24719412 -177608935 - L1MC3 LINE L1 -463 7322 7180 243 242 15 15 chr4 24719420 24719486 -177608861 - MLT1F1 LTR MaLR -466 101 36 1952 174 33 30 chr4 24719487 24719720 -177608627 - L1MC3 LINE L1 -688 7097 6861 210 37 0 0 chr4 24719720 24719747 -177608600 + (TG)n Simple_repeat Simple_repeat 2 28 0 1952 174 33 30 chr4 24719747 24719910 -177608437 - L1MC3 LINE L1 -924 6861 6700 749 226 137 66 chr4 24720048 24720429 -177607918 - MER113 DNA MER1_type? -113 408 1 1713 177 0 3 chr4 24720432 24720741 -177607606 + AluJb SINE Alu 1 308 0 21 36 0 0 chr4 24721171 24721199 -177607148 + AT_rich Low_complexity Low_complexity 1 28 0 382 287 102 57 chr4 24721702 24722031 -177606316 + MLT1G LTR MaLR 19 375 -180 871 326 51 6 chr4 24722201 24722517 -177605830 + MLT1I LTR MaLR 31 360 -49 208 374 79 22 chr4 24722607 24722834 -177605513 + L2 LINE L2 2841 3080 -192 677 339 36 0 chr4 24722916 24723140 -177605207 - MIR SINE MIR -30 232 1 251 311 92 17 chr4 24723187 24723306 -177605041 + L2 LINE L2 3168 3295 -18 228 67 0 0 chr4 24724741 24724771 -177603576 + (TG)n Simple_repeat Simple_repeat 1 30 0 200 378 49 7 chr4 24724814 24724957 -177603390 - MIR3 SINE MIR -41 167 19 1990 119 7 0 chr4 24725946 24726231 -177602116 - AluSx SINE Alu -25 287 1 2093 126 0 0 chr4 24727428 24727721 -177600626 - AluSx SINE Alu -19 293 1 313 372 82 10 chr4 24727939 24728135 -177600212 + L2 LINE L2 2561 2770 -544 276 272 11 0 chr4 24729139 24729231 -177599116 + (TA)n Simple_repeat Simple_repeat 1 93 0 326 275 132 0 chr4 24730690 24730781 -177597566 + L2 LINE L2 3160 3262 -10 998 363 81 15 chr4 24730913 24731937 -177596410 - L2 LINE L2 -94 3219 2130 180 0 0 0 chr4 24732637 24732657 -177595690 + (TG)n Simple_repeat Simple_repeat 2 21 0 1533 112 5 0 chr4 24732815 24733021 -177595326 - AluSq SINE Alu -106 207 1 225 273 182 38 chr4 24733045 24733177 -177595170 - L2 LINE L2 0 3313 3163 23 33 0 0 chr4 24733177 24733207 -177595140 + AT_rich Low_complexity Low_complexity 1 30 0 32 26 0 0 chr4 24733511 24733550 -177594797 + AT_rich Low_complexity Low_complexity 1 39 0 338 248 32 70 chr4 24733550 24733707 -177594640 + MLT1I LTR MaLR 377 527 -22 215 312 142 14 chr4 24733876 24734017 -177594330 + L2 LINE L2 2996 3154 -159 336 64 0 0 chr4 24734036 24734083 -177594264 + (CA)n Simple_repeat Simple_repeat 2 48 0 300 115 0 0 chr4 24734107 24734159 -177594188 + MLT2C2 LTR ERVL 1 52 -412 2464 90 26 32 chr4 24735258 24735635 -177592712 - THE1C LTR MaLR 0 375 1 398 320 44 63 chr4 24735878 24736194 -177592153 + MLT1I LTR MaLR 68 377 -32 258 217 0 60 chr4 24736934 24737017 -177591330 - L1MC4 LINE L1 -1351 6691 6614 230 193 18 0 chr4 24737017 24737074 -177591273 + (TA)n Simple_repeat Simple_repeat 2 59 0 270 0 0 0 chr4 24737582 24737612 -177590735 + (CA)n Simple_repeat Simple_repeat 2 31 0 574 219 51 29 chr4 24738555 24738692 -177589655 + MIR SINE MIR 65 204 -58 235 241 35 0 chr4 24738725 24738783 -177589564 + L2 LINE L2 3001 3060 -212 198 240 40 0 chr4 24738965 24739015 -177589332 + L2 LINE L2 3248 3299 -14 213 39 0 0 chr4 24739018 24739044 -177589303 + (TGAA)n Simple_repeat Simple_repeat 3 28 0 848 313 25 4 chr4 24739085 24739325 -177589022 - MIR SINE MIR -5 257 13 216 67 0 0 chr4 24739627 24739657 -177588690 + (CA)n Simple_repeat Simple_repeat 1 30 0 25 31 0 0 chr4 24740059 24740091 -177588256 + AT_rich Low_complexity Low_complexity 1 32 0 238 317 69 30 chr4 24740098 24740199 -177588148 - MIR SINE MIR -137 125 21 22 0 0 0 chr4 24740403 24740425 -177587922 + AT_rich Low_complexity Low_complexity 1 22 0 319 208 108 8 chr4 24740452 24740572 -177587775 - L1ME4a LINE L1 -33 6088 5957 371 317 81 5 chr4 24740900 24741086 -177587261 + MIR SINE MIR 21 220 -42 276 261 11 49 chr4 24741090 24741210 -177587137 - L1ME4a LINE L1 -517 5604 5491 209 290 0 32 chr4 24741712 24741774 -177586573 - L2 LINE L2 0 3272 3213 746 268 72 23 chr4 24741799 24742105 -177586242 + Charlie4a DNA MER1_type 21 341 -167 220 356 136 0 chr4 24743847 24743965 -177584382 + MIR3 SINE MIR 14 147 -61 203 88 29 0 chr4 24744074 24744108 -177584239 + (TATG)n Simple_repeat Simple_repeat 2 36 0 266 267 19 9 chr4 24744157 24744262 -177584085 + (TA)n Simple_repeat Simple_repeat 2 107 0 2321 69 0 10 chr4 24745315 24745618 -177582729 - AluY SINE Alu -11 300 1 404 336 49 0 chr4 24745663 24745806 -177582541 + L2 LINE L2 3163 3312 -1 301 288 25 25 chr4 24746053 24746171 -177582176 - L1MC/D LINE L1 -2148 5660 5543 22 88 0 0 chr4 24746333 24746390 -177581957 + AT_rich Low_complexity Low_complexity 1 57 0 404 297 15 49 chr4 24746437 24746703 -177581644 - L1MC/D LINE L1 -1300 4846 4590 1022 209 0 0 chr4 24746764 24746955 -177581392 - AluJb SINE Alu -1 311 121 2135 122 76 15 chr4 24747684 24748027 -177580320 + THE1B LTR MaLR 1 364 0 412 299 63 29 chr4 24749016 24749223 -177579124 - L2 LINE L2 -1 3312 3099 271 301 130 0 chr4 24749412 24749535 -177578812 - MIR SINE MIR -93 169 31 199 219 0 122 chr4 24751330 24751412 -177576935 - MIR SINE MIR -11 251 180 277 325 195 13 chr4 24751554 24751708 -177576639 + MIR3 SINE MIR 4 185 -23 1875 99 0 0 chr4 24752644 24752887 -177575460 + AluSc SINE Alu 4 246 -63 258 309 14 58 chr4 24754324 24754463 -177573884 + L2 LINE L2 3135 3267 -46 40 21 0 0 chr4 24754594 24754641 -177573706 + AT_rich Low_complexity Low_complexity 1 47 0 1073 194 5 0 chr4 24754641 24754847 -177573500 - L1PA16 LINE L1 -9 6157 5951 231 292 14 14 chr4 24755527 24755599 -177572748 - MIR SINE MIR -123 139 68 1707 120 25 15 chr4 24755973 24756247 -177572100 + AluSx SINE Alu 27 303 -9 308 238 48 38 chr4 24756529 24756634 -177571713 - MIR SINE MIR -47 215 110 499 301 23 10 chr4 24757385 24757564 -177570783 - MIR3 SINE MIR -32 176 3 416 265 14 126 chr4 24757580 24757803 -177570544 - L2 LINE L2 0 3272 3075 1306 204 37 79 chr4 24758025 24758432 -177569915 + MLT1B LTR MaLR 1 390 0 216 271 12 47 chr4 24759083 24759168 -177569179 + MIR SINE MIR 47 128 -80 263 395 25 62 chr4 24760541 24760817 -177567530 - L2 LINE L2 -16 3256 2991 198 297 55 22 chr4 24760974 24761065 -177567282 - L3 LINE CR1 -337 1240 1147 391 314 19 44 chr4 24761638 24761797 -177566550 - L2 LINE L2 -8 3264 3110 245 324 54 14 chr4 24761964 24762038 -177566309 + MIR SINE MIR 50 126 -136 2206 97 86 17 chr4 24763315 24763665 -177564682 - THE1C LTR MaLR 0 375 2 3214 106 4 9 chr4 24763666 24764119 -177564228 - THE1C-int LTR MaLR 0 1580 1130 1325 148 37 25 chr4 24764222 24764465 -177563882 - THE1C LTR MaLR -129 246 1 349 313 41 34 chr4 24764842 24764989 -177563358 + MIR3 SINE MIR 54 201 -7 546 210 22 43 chr4 24765888 24766026 -177562321 + MER33 DNA MER1_type 1 135 -189 700 217 190 0 chr4 24766077 24766298 -177562049 - L2 LINE L2 -692 2622 2360 241 289 26 13 chr4 24766283 24766359 -177561988 - MIR SINE MIR -75 133 57 * 432 310 35 0 chr4 24766362 24766478 -177561869 - MIR3 SINE MIR -24 184 65 261 0 0 0 chr4 24766534 24766563 -177561784 + (T)n Simple_repeat Simple_repeat 1 29 0 217 146 83 0 chr4 24766890 24766938 -177561409 - L2 LINE L2 -813 2501 2450 279 397 35 0 chr4 24767063 24767179 -177561168 - MIR3 SINE MIR -24 184 65 261 0 0 0 chr4 24767236 24767265 -177561082 + (T)n Simple_repeat Simple_repeat 1 29 0 775 304 90 67 chr4 24768024 24768692 -177559655 + MER21B LTR ERV1 24 706 -157 264 107 0 126 chr4 24768732 24768835 -177559512 + (TTTTA)n Simple_repeat Simple_repeat 3 92 0 2531 154 4 41 chr4 24769107 24769569 -177558778 - Tigger2 DNA MER2_type -1 2717 2273 392 192 0 41 chr4 24769557 24769630 -177558717 + MER8 DNA MER2_type 170 239 0 * 363 306 131 0 chr4 24769993 24770153 -177558194 + MIR SINE MIR 67 247 -15 427 247 115 75 chr4 24770153 24770327 -177558020 - MIR SINE MIR -76 186 6 401 315 64 41 chr4 24770908 24771127 -177557220 + MARNA DNA Mariner 15 238 -348 267 103 0 0 chr4 24771342 24771381 -177556966 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2226 92 0 0 chr4 24771385 24771667 -177556680 - AluSx SINE Alu -30 282 1 2293 105 0 0 chr4 24772267 24772571 -177555776 - AluSq SINE Alu -9 304 1 352 302 93 22 chr4 24773569 24773708 -177554639 - L2 LINE L2 -206 3066 2918 348 321 29 143 chr4 24774417 24774831 -177553516 - L2 LINE L2 0 3272 2906 596 340 44 10 chr4 24775225 24775428 -177552919 + MIR SINE MIR 46 255 -7 966 100 0 0 chr4 24776768 24776908 -177551439 + (TTTC)n Simple_repeat Simple_repeat 2 141 0 7086 62 5 0 chr4 24776910 24778024 -177550323 - L1PA7 LINE L1 -8 6146 5031 216 307 39 39 chr4 24778036 24778163 -177550184 + MIR3 SINE MIR 54 180 -28 257 324 0 0 chr4 24778584 24778652 -177549695 + L2 LINE L2 3205 3272 0 270 338 106 25 chr4 24779262 24779460 -177548887 - MIR SINE MIR -48 214 1 263 298 130 8 chr4 24779666 24779797 -177548550 - L2 LINE L2 0 3313 3167 263 226 107 0 chr4 24780782 24780866 -177547481 - MER5A DNA MER1_type -85 104 12 500 224 43 149 chr4 24781821 24782076 -177546271 + MIR SINE MIR 15 242 -20 810 233 28 19 chr4 24782111 24782326 -177546021 - MIR SINE MIR -45 217 1 183 80 0 0 chr4 24782339 24782364 -177545983 + (CTA)n Simple_repeat Simple_repeat 3 27 0 272 290 30 20 chr4 24782364 24782464 -177545883 - MIR SINE MIR -161 101 1 216 67 0 0 chr4 24782837 24782867 -177545480 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 745 311 57 4 chr4 24784504 24784752 -177543595 + L2 LINE L2 2600 2860 -454 675 263 104 43 chr4 24784763 24785090 -177543257 + L2 LINE L2 2966 3312 -1 13257 237 37 22 chr4 24785171 24790110 -177538237 - L1MA4A LINE L1 -4 7001 2013 1278 195 27 16 chr4 24790113 24790369 -177537978 - L1MA4A LINE L1 -6587 262 4 259 371 101 45 chr4 24790535 24791241 -177537106 - L2 LINE L2 -337 2977 2233 7522 240 76 31 chr4 24791258 24797796 -177530551 + L1PBa LINE L1 3 5995 -867 234 105 0 0 chr4 24797797 24797835 -177530512 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 281 0 0 0 chr4 24797878 24797911 -177530436 + L1PB2 LINE L1 5867 5899 -252 689 270 40 26 chr4 24798267 24798493 -177529854 - MLT1H1 LTR MaLR 0 555 327 186 172 0 47 chr4 24798511 24798575 -177529772 + CT-rich Low_complexity Low_complexity 2 62 0 251 221 128 35 chr4 24798652 24798738 -177529609 - MLT1H1 LTR MaLR -375 174 81 269 298 46 46 chr4 24800485 24800616 -177527731 - L3 LINE CR1 -127 1450 1320 229 376 43 6 chr4 24800635 24800797 -177527550 + MIR SINE MIR 21 188 -74 383 373 55 7 chr4 24801186 24801457 -177526890 + L2 LINE L2 2352 2635 -679 306 0 0 0 chr4 24802732 24802766 -177525581 + (TG)n Simple_repeat Simple_repeat 1 34 0 380 167 0 15 chr4 24803083 24803149 -177525198 + MER105 DNA DNA 139 203 -1 295 413 32 0 chr4 24803443 24803598 -177524749 - L3 LINE CR1 -19 1558 1399 345 339 25 62 chr4 24803893 24804135 -177524212 - HERVL68 LTR ERVL -345 2692 2460 2213 119 0 0 chr4 24854498 24854793 -177473554 + AluSq SINE Alu 9 303 -10 197 365 21 10 chr4 24855046 24855142 -177473205 + MIR SINE MIR 32 128 -134 22 0 0 0 chr4 24855474 24855496 -177472851 + AT_rich Low_complexity Low_complexity 1 22 0 4704 122 42 6 chr4 24855853 24856654 -177471693 + L1PA13 LINE L1 5329 6161 -2 485 173 0 0 chr4 24857178 24857253 -177471094 - 5S rRNA rRNA -29 92 18 3928 110 13 41 chr4 24857253 24858285 -177470062 + L1PA7 LINE L1 5076 6072 -82 393 355 18 12 chr4 24858895 24859061 -177469286 - MIR SINE MIR -94 168 2 505 142 53 13 chr4 24859748 24859857 -177468490 - MLT1A2 LTR MaLR -254 111 1 23 33 0 0 chr4 24862517 24862547 -177465800 + AT_rich Low_complexity Low_complexity 1 30 0 2215 66 0 0 chr4 24863005 24863276 -177465071 - AluY SINE Alu -37 274 4 1323 98 0 0 chr4 24864532 24864751 -177463596 + AluY SINE Alu 127 311 0 424 236 50 18 chr4 24865368 24865564 -177462783 + THE1B LTR MaLR 150 348 -16 23 0 0 0 chr4 24866235 24866258 -177462089 + AT_rich Low_complexity Low_complexity 1 23 0 707 272 88 20 chr4 24866375 24866997 -177461350 - L1 LINE L1 -1177 4969 4297 329 333 161 29 chr4 24867182 24867804 -177460543 - L1 LINE L1 -3267 2879 2176 1997 236 71 12 chr4 24868341 24869181 -177459166 + L1MCb LINE L1 649 1543 -4851 5552 101 6 28 chr4 24870160 24871593 -177456754 - L1PA7 LINE L1 -201 5953 4562 206 304 14 0 chr4 24873364 24873433 -177454914 + (CATATA)n Simple_repeat Simple_repeat 3 72 0 257 143 20 20 chr4 24874791 24874840 -177453507 - MLT2B2 LTR ERVL -466 49 1 8020 120 8 10 chr4 24874840 24876045 -177452302 - HERVL-B2 LTR ERVL 0 5654 4452 346 250 13 0 chr4 24876748 24876824 -177451523 - MLT1D LTR MaLR -428 77 1 2213 99 3 3 chr4 24876901 24877195 -177451152 + AluSx SINE Alu 1 294 -18 253 306 50 58 chr4 24878224 24878466 -177449881 + L2 LINE L2 2380 2619 -695 539 250 130 76 chr4 24878476 24878900 -177449447 - MLT1G3 LTR MaLR -26 523 75 647 330 64 29 chr4 24878952 24879297 -177449050 + L2 LINE L2 2617 2973 -341 566 189 14 81 chr4 24880029 24880177 -177448170 + MLT2A2 LTR ERVL 269 406 -47 715 303 149 20 chr4 24880293 24880735 -177447612 - LTR33 LTR ERVL -7 514 16 1693 149 64 10 chr4 24880877 24881172 -177447175 + AluSx SINE Alu 1 311 -1 1149 164 28 35 chr4 24881993 24882280 -177446067 - L1MA3 LINE L1 -30 6275 5991 864 156 0 7 chr4 24882270 24882424 -177445923 + L1MA3 LINE L1 5836 5988 -317 * 447 309 96 50 chr4 24882629 24883069 -177445278 - MER90 LTR ERV1 -38 576 78 936 209 105 14 chr4 24883652 24883862 -177444485 + MLT1D LTR MaLR 259 487 -18 180 179 0 0 chr4 24883900 24883939 -177444408 + (CA)n Simple_repeat Simple_repeat 2 40 0 245 329 132 20 chr4 24884830 24884982 -177443365 + MLT1J2 LTR MaLR 270 438 -12 1921 182 50 40 chr4 24885721 24886200 -177442147 + LTR2B LTR ERV1 7 490 0 2519 221 32 30 chr4 24886533 24886584 -177441763 + L1MCa LINE L1 922 971 -5455 2216 91 3 14 chr4 24886584 24886881 -177441466 + AluY SINE Alu 1 294 -17 2519 221 32 30 chr4 24886881 24887826 -177440521 + L1MCa LINE L1 971 2009 -4417 372 298 15 54 chr4 24887972 24888244 -177440103 - AluSg/x SINE Alu -29 273 92 1552 167 15 4 chr4 24888456 24888726 -177439621 - MSTA LTR MaLR -152 276 4 3087 173 39 37 chr4 24888822 24889521 -177438826 - L1MC1 LINE L1 0 6333 5634 451 314 74 54 chr4 24890712 24890954 -177437393 - MIR SINE MIR -14 248 2 2133 231 58 82 chr4 24892270 24892605 -177435742 + L1MDa LINE L1 1721 2062 -4659 4910 95 24 7 chr4 24892605 24893321 -177435026 + L1PA8 LINE L1 5441 6168 -4 2133 231 58 82 chr4 24893321 24894073 -177434274 + L1MDa LINE L1 2062 2806 -3915 246 373 73 0 chr4 24894274 24894384 -177433963 - L2 LINE L2 0 3272 3155 1846 124 118 24 chr4 24894500 24894831 -177433516 - THE1B LTR MaLR -2 362 1 284 299 81 0 chr4 24895406 24895493 -177432854 + MIR SINE MIR 55 148 -60 10077 115 15 2 chr4 24895857 24897429 -177430918 - L1P LINE L1 -2676 3470 1878 5632 131 3 3 chr4 24897568 24898651 -177429696 - L1PA14 LINE L1 -11 6150 5069 299 127 0 18 chr4 24899291 24899346 -177429001 - MLT2A1 LTR ERVL -1 443 390 329 197 13 0 chr4 24899346 24899422 -177428925 + (TA)n Simple_repeat Simple_repeat 2 78 0 335 212 92 115 chr4 24900219 24900436 -177427911 - MIR SINE MIR -4 258 47 10809 107 9 32 chr4 24900459 24902207 -177426140 + L1P3 LINE L1 1 1708 -4753 232 250 88 0 chr4 24902985 24903065 -177425282 - MLT1K LTR MaLR -131 457 371 1833 129 7 11 chr4 24903126 24903432 -177424915 - AluSq SINE Alu 0 338 34 417 290 83 7 chr4 24903678 24903823 -177424524 - MIR SINE MIR -10 252 97 894 287 26 20 chr4 24904107 24904563 -177423784 - L1MCa LINE L1 -2598 3828 3370 25 102 0 0 chr4 24904593 24904681 -177423666 + AT_rich Low_complexity Low_complexity 1 88 0 1725 244 72 58 chr4 24904747 24905838 -177422509 - L1MCa LINE L1 -3153 3273 2163 1887 138 42 0 chr4 24905838 24906127 -177422220 + AluSx SINE Alu 1 301 -11 1725 244 72 58 chr4 24906127 24906236 -177422111 - L1MCa LINE L1 -4263 2163 2057 250 348 57 28 chr4 24906721 24906862 -177421485 - MIR SINE MIR -111 151 7 26 30 0 0 chr4 24907056 24907089 -177421258 + AT_rich Low_complexity Low_complexity 1 33 0 236 345 198 0 chr4 24907315 24907431 -177420916 - L2 LINE L2 0 3272 3134 334 327 43 46 chr4 24907488 24907718 -177420629 - L2 LINE L2 -242 3030 2803 23 0 0 0 chr4 24909274 24909297 -177419050 + AT_rich Low_complexity Low_complexity 1 23 0 1440 106 4 21 chr4 24910068 24910304 -177418043 + L1PA10 LINE L1 5937 6168 0 207 0 0 0 chr4 24911161 24911184 -177417163 + (T)n Simple_repeat Simple_repeat 1 23 0 1824 136 41 7 chr4 24911216 24911511 -177416836 - AluSx SINE Alu -7 305 1 24 0 0 0 chr4 24912503 24912527 -177415820 + AT_rich Low_complexity Low_complexity 1 24 0 491 312 64 12 chr4 24913316 24913534 -177414813 + MIR SINE MIR 4 230 -32 206 303 15 15 chr4 24914661 24914727 -177413620 - L2 LINE L2 -38 3234 3169 2212 128 0 0 chr4 24914945 24915250 -177413097 - AluSx SINE Alu -7 305 1 285 241 51 13 chr4 24915381 24915460 -177412887 - L2 LINE L2 0 3313 3232 22 0 0 0 chr4 24916609 24916631 -177411716 + AT_rich Low_complexity Low_complexity 1 22 0 2078 133 0 0 chr4 24916631 24916924 -177411423 - AluJb SINE Alu -19 293 1 724 298 67 39 chr4 24917079 24917391 -177410956 - MLT1J1 LTR MaLR -100 346 26 2334 77 0 32 chr4 24918541 24918852 -177409495 - AluY SINE Alu -10 301 1 204 40 0 0 chr4 24919638 24919663 -177408684 + (GA)n Simple_repeat Simple_repeat 2 26 0 8672 162 38 10 chr4 24919946 24921484 -177406863 + Tigger1 DNA MER2_type 1 1581 -837 1673 213 5 11 chr4 24921497 24921864 -177406483 + L1PA16 LINE L1 5794 6158 -8 1006 128 94 15 chr4 24921874 24922077 -177406270 + L1P5 LINE L1 5571 5789 -367 260 284 0 0 chr4 24922079 24922167 -177406180 - L1MC4 LINE L1 -1340 6702 6615 300 233 0 0 chr4 24922168 24922241 -177406106 + (TA)n Simple_repeat Simple_repeat 1 73 0 1848 169 56 3 chr4 24922254 24922591 -177405756 + L1PB4 LINE L1 5789 6143 -13 3567 142 51 25 chr4 24922601 24923328 -177405019 + Tigger1 DNA MER2_type 1577 2418 0 276 333 83 14 chr4 24924144 24924288 -177404059 + MIR SINE MIR 30 183 -79 719 207 110 6 chr4 24924779 24924943 -177403404 + MSTC LTR MaLR 197 377 -51 369 220 11 11 chr4 24925074 24925165 -177403182 + MLT1K LTR MaLR 494 584 -4 24 0 0 0 chr4 24925246 24925270 -177403077 + AT_rich Low_complexity Low_complexity 1 24 0 496 331 54 19 chr4 24925497 24925868 -177402479 - L1ME LINE L1 -375 5795 5412 2099 100 23 0 chr4 24925934 24926234 -177402113 - AluSc SINE Alu 0 309 3 13606 151 78 33 chr4 24926448 24929050 -177399297 - Tigger2 DNA MER2_type 0 2718 1 455 391 46 24 chr4 24929078 24929668 -177398679 - L1MEd LINE L1 -5422 697 95 24 32 0 0 chr4 24931119 24931150 -177397197 + AT_rich Low_complexity Low_complexity 1 31 0 385 288 17 17 chr4 24931721 24931839 -177396508 + L2 LINE L2 3196 3313 0 1517 225 35 41 chr4 24932798 24933088 -177395259 - MLT1C LTR MaLR 0 467 180 2505 64 0 0 chr4 24933088 24933385 -177394962 - AluY SINE Alu -14 297 1 1517 225 35 41 chr4 24933385 24933556 -177394791 - MLT1C LTR MaLR -287 180 9 532 271 208 19 chr4 24933571 24933778 -177394569 - MIR SINE MIR -10 252 7 311 353 126 26 chr4 24934088 24934539 -177393808 + L2 LINE L2 2669 3167 -146 469 231 41 8 chr4 24935092 24935213 -177393134 + LTR33 LTR ERVL 397 521 0 1151 251 70 106 chr4 24935278 24935920 -177392427 - L2 LINE L2 -18 3295 2692 242 54 0 27 chr4 24935920 24935957 -177392390 + (TG)n Simple_repeat Simple_repeat 2 37 0 1151 251 70 106 chr4 24935957 24936147 -177392200 - L2 LINE L2 -621 2692 2497 1022 291 55 82 chr4 24936144 24936841 -177391506 - L2 LINE L2 0 3313 2640 * 266 224 26 95 chr4 24936919 24937035 -177391312 - L2 LINE L2 -885 2429 2322 200 281 34 67 chr4 24938505 24938594 -177389753 - L2 LINE L2 -6 3307 3222 484 199 8 8 chr4 24938604 24938735 -177389612 + GA-rich Low_complexity Low_complexity 2 132 0 1394 245 30 0 chr4 24939222 24939553 -177388794 - MLT1C LTR MaLR -124 343 3 1338 124 0 0 chr4 24939579 24939756 -177388591 + AluSq SINE Alu 1 177 -136 1117 137 0 16 chr4 24939876 24940058 -177388289 - AluSg/x SINE Alu -5 307 129 1950 252 62 96 chr4 24940179 24940469 -177387878 - L1MCb LINE L1 -5115 930 632 381 175 0 0 chr4 24940469 24940532 -177387815 + AluJ/FRAM SINE Alu 230 292 -10 1950 252 62 96 chr4 24940532 24941130 -177387217 - L1MCb LINE L1 -5413 632 12 415 277 36 0 chr4 24941159 24941296 -177387051 - L1MCa LINE L1 -4765 1661 1520 1123 261 75 21 chr4 24942617 24943037 -177385310 - MSTB2 LTR MaLR 0 457 1 4479 138 71 33 chr4 24943125 24944071 -177384276 + MER52C LTR ERV1 1 1277 -1 411 237 126 11 chr4 24944072 24944262 -177384085 + MER113 DNA MER1_type? 18 229 -292 283 132 113 0 chr4 24944336 24944389 -177383958 + MER113 DNA MER1_type? 348 406 -115 327 402 43 11 chr4 24945048 24945416 -177382931 - L3 LINE CR1 -275 1302 923 234 247 11 101 chr4 24945417 24945506 -177382841 - L3 LINE CR1 -609 968 888 34 0 0 0 chr4 24945510 24945544 -177382803 + AT_rich Low_complexity Low_complexity 1 34 0 677 321 47 0 chr4 24945579 24945791 -177382556 + MIR SINE MIR 41 262 0 837 98 0 0 chr4 24947134 24947277 -177381070 + (TA)n Simple_repeat Simple_repeat 2 144 0 209 287 11 10 chr4 24948262 24948460 -177379887 + (TA)n Simple_repeat Simple_repeat 1 198 0 224 242 30 0 chr4 24948386 24948452 -177379895 + (TATG)n Simple_repeat Simple_repeat 1 68 0 213 279 0 13 chr4 24948964 24949043 -177379304 - MIR SINE MIR -120 142 65 1927 107 73 3 chr4 24949045 24949334 -177379013 - AluSg SINE Alu 0 310 2 21 0 0 0 chr4 24949728 24949749 -177378598 + AT_rich Low_complexity Low_complexity 1 21 0 2241 112 3 0 chr4 24950857 24951161 -177377186 + AluSx SINE Alu 1 305 -7 230 289 170 15 chr4 24951182 24951317 -177377030 - L3 LINE CR1 -106 1471 1316 190 108 27 27 chr4 24951436 24951473 -177376874 - MIR SINE MIR -64 144 108 5621 109 19 1 chr4 24951604 24952994 -177375353 - L1PA13 LINE L1 -19 6144 4723 2911 210 25 30 chr4 24952999 24953761 -177374586 - L1PA13 LINE L1 -2210 3936 3179 * 5829 162 14 17 chr4 24953756 24955530 -177372817 - L1PB1 LINE L1 0 6151 4374 186 43 0 0 chr4 24955530 24955553 -177372794 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2006 133 0 0 chr4 24955554 24955833 -177372514 - AluSx SINE Alu -32 280 2 5829 162 14 17 chr4 24955833 24956183 -177372164 - L1PB1 LINE L1 -1776 4375 4033 1479 114 0 5 chr4 24956375 24956699 -177371648 - THE1C LTR MaLR 0 375 1 23 0 0 0 chr4 24958298 24958321 -177370026 + AT_rich Low_complexity Low_complexity 1 23 0 236 218 248 20 chr4 24958855 24958956 -177369391 + MER5C DNA MER1_type 1 124 -200 387 336 0 8 chr4 24959225 24959350 -177368997 + L2 LINE L2 3190 3313 0 1674 183 3 3 chr4 24959851 24960141 -177368206 - AluJb SINE Alu -22 290 1 252 0 0 0 chr4 24960152 24960180 -177368167 + (T)n Simple_repeat Simple_repeat 1 28 0 286 296 56 0 chr4 24960181 24960252 -177368095 - MIR SINE MIR -63 145 71 2212 146 24 11 chr4 24960306 24960676 -177367671 - THE1C LTR MaLR 0 375 1 213 132 0 0 chr4 24960974 24961012 -177367335 + (CAA)n Simple_repeat Simple_repeat 2 39 0 800 202 71 15 chr4 24961284 24961482 -177366865 - MER3 DNA MER1_type 0 209 1 380 298 25 8 chr4 24961559 24961680 -177366667 - MER94 DNA DNA -11 123 1 213 291 12 12 chr4 24961742 24961828 -177366519 + MIR SINE MIR 94 179 -83 193 385 31 31 chr4 24961874 24961970 -177366377 + L2 LINE L2 3160 3255 -17 370 274 97 80 chr4 24964177 24964403 -177363944 + MIR SINE MIR 33 262 0 30 27 0 0 chr4 24964403 24964440 -177363907 + AT_rich Low_complexity Low_complexity 1 37 0 245 296 85 76 chr4 24965638 24965861 -177362486 - MIR SINE MIR -11 251 27 236 331 114 25 chr4 24967099 24967278 -177361069 - MIR SINE MIR -76 186 3 597 296 76 17 chr4 24968167 24968503 -177359844 + MLT2E LTR ERVL 215 618 -10 234 0 0 0 chr4 24968598 24968624 -177359723 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 274 329 24 52 chr4 24969994 24970204 -177358143 - L2 LINE L2 -243 3070 2867 500 312 13 19 chr4 24970979 24971136 -177357211 + MLT1H LTR MaLR 199 354 -195 326 313 24 53 chr4 24971409 24971617 -177356730 + L2 LINE L2 2867 3068 -245 191 188 21 0 chr4 24971684 24971732 -177356615 + (TA)n Simple_repeat Simple_repeat 1 49 0 204 40 0 0 chr4 24971806 24971831 -177356516 + (TG)n Simple_repeat Simple_repeat 2 26 0 296 294 94 0 chr4 24971887 24971972 -177356375 - MIR3 SINE MIR -15 193 101 386 340 79 17 chr4 24972305 24972681 -177355666 + MLT1J2 LTR MaLR 67 450 0 495 372 108 17 chr4 24972690 24972986 -177355361 + L2 LINE L2 2945 3267 -5 189 0 0 0 chr4 24973683 24973704 -177354643 + (A)n Simple_repeat Simple_repeat 1 21 0 304 192 13 26 chr4 24973749 24973827 -177354520 - MER116 DNA Mariner 0 80 4 209 323 21 52 chr4 24974018 24974114 -177354233 + L2 LINE L2 3179 3271 -1 181 351 61 23 chr4 24974659 24974790 -177353557 + MIR SINE MIR 53 188 -74 364 264 179 0 chr4 24975305 24975411 -177352936 - L2 LINE L2 0 3272 3148 1231 96 0 0 chr4 24975959 24976141 -177352206 - AluY SINE Alu 0 309 128 820 187 3 114 chr4 24976267 24976599 -177351748 - AluY SINE Alu -16 295 1 855 351 138 12 chr4 24979149 24979656 -177348691 - L3 LINE CR1 -1 1576 1006 1377 265 98 27 chr4 24979751 24980427 -177347920 - L1ME3 LINE L1 -8 6154 5431 499 275 15 0 chr4 24980725 24980856 -177347491 - MER94 DNA DNA 0 134 2 2019 279 22 29 chr4 24981186 24981767 -177346580 - MLT1E LTR MaLR -16 577 1 497 75 21 32 chr4 24981932 24982026 -177346321 + (TTTTC)n Simple_repeat Simple_repeat 3 95 0 267 191 0 0 chr4 24982021 24982084 -177346263 + (TCTA)n Simple_repeat Simple_repeat 2 64 0 * 297 309 24 40 chr4 24982204 24982330 -177346017 + MIR SINE MIR 31 154 -108 330 391 6 19 chr4 24983140 24983301 -177345046 + MIR3 SINE MIR 43 201 -7 469 278 47 30 chr4 24984216 24984385 -177343962 - MIR3 SINE MIR -33 175 4 185 293 0 0 chr4 24984995 24985036 -177343311 + L3 LINE CR1 1516 1556 -21 23 33 0 0 chr4 24985755 24985785 -177342562 + AT_rich Low_complexity Low_complexity 1 30 0 285 304 84 51 chr4 24986040 24986454 -177341893 + L1ME4a LINE L1 5617 6044 -77 245 313 164 37 chr4 24988335 24988469 -177339878 - MIR3 SINE MIR -39 169 19 284 360 79 28 chr4 24989534 24989649 -177338698 - MIR SINE MIR -36 226 118 2719 102 0 0 chr4 24989649 24990012 -177338335 + THE1B LTR MaLR 2 364 0 284 360 79 28 chr4 24990012 24990110 -177338237 - MIR SINE MIR -144 118 2 971 201 0 0 chr4 24990463 24990657 -177337690 + AluJb SINE Alu 131 324 0 2040 130 0 7 chr4 24991005 24991304 -177337043 - AluSx SINE Alu -7 305 9 186 43 0 0 chr4 24991314 24991337 -177337010 + (T)n Simple_repeat Simple_repeat 1 23 0 592 242 106 19 chr4 24991337 24991498 -177336849 - FAM SINE Alu 0 175 1 251 336 14 55 chr4 24991933 24992079 -177336268 - MIR3 SINE MIR -64 144 5 385 250 0 0 chr4 24992140 24992228 -177336119 + MER94 DNA DNA 2 89 -45 468 288 103 44 chr4 24993555 24994000 -177334347 + MLT1H LTR MaLR 10 519 -30 1913 183 144 79 chr4 24994056 24994179 -177334168 + MLT1E1 LTR MaLR 10 124 -530 1896 137 3 26 chr4 24994179 24994485 -177333862 + AluSx SINE Alu 1 299 -13 1913 183 144 79 chr4 24994485 24994967 -177333380 + MLT1E1 LTR MaLR 124 654 0 258 268 181 31 chr4 24996286 24996413 -177331934 - MLT1J LTR MaLR -73 438 293 999 230 60 60 chr4 24996555 24996920 -177331427 + MLT1A1 LTR MaLR 1 365 0 241 320 52 0 chr4 24997038 24997135 -177331212 - L2 LINE L2 -3 3310 3209 360 283 0 0 chr4 24997229 24997328 -177331019 - MIR SINE MIR -18 244 146 1929 139 6 22 chr4 24997388 24997705 -177330642 - AluJb SINE Alu 0 312 1 551 243 110 17 chr4 24998116 24998289 -177330058 - MER5A DNA MER1_type 0 189 1 4364 208 69 5 chr4 24998366 24998684 -177329663 + Tigger6a DNA MER2_type 1 297 -1300 1490 235 19 22 chr4 24998684 24999050 -177329297 - MLT1A1 LTR MaLR 0 365 1 4364 208 69 5 chr4 24999050 24999749 -177328598 + Tigger6a DNA MER2_type 297 1083 0 2113 107 10 3 chr4 24999850 25000149 -177328198 - AluSc SINE Alu -8 301 1 2278 142 37 55 chr4 25000189 25000625 -177327722 - Tigger2a DNA MER2_type -6 428 1 1522 223 56 28 chr4 25000787 25001177 -177327170 - MLT1C LTR MaLR 0 467 67 181 219 123 0 chr4 25001240 25001313 -177327034 + MIR SINE MIR 105 186 -76 21 0 0 0 chr4 25001387 25001408 -177326939 + AT_rich Low_complexity Low_complexity 1 21 0 665 165 15 60 chr4 25002030 25002163 -177326184 + FLAM_A SINE Alu 1 127 -6 184 29 29 29 chr4 25002168 25002202 -177326145 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 2105 305 136 37 chr4 25002203 25003759 -177324588 + L1M4 LINE L1 2274 3983 -2163 5609 180 26 17 chr4 25003763 25005208 -177323139 - L1MA10 LINE L1 -1 6333 4871 426 278 9 0 chr4 25005235 25005350 -177322997 - MER44D DNA MER2_type -1 604 489 213 227 45 0 chr4 25005350 25005416 -177322931 + (TA)n Simple_repeat Simple_repeat 1 69 0 1391 246 36 38 chr4 25005416 25005888 -177322459 - MER44D DNA MER2_type -79 526 1 1524 213 35 8 chr4 25005888 25006288 -177322059 - L1MA10 LINE L1 -1316 4830 4420 367 214 21 91 chr4 25006289 25006476 -177321871 + L1 LINE L1 3456 3629 -2517 25 75 0 0 chr4 25007085 25007138 -177321209 + AT_rich Low_complexity Low_complexity 1 53 0 2979 209 65 44 chr4 25007252 25008303 -177320044 - L1MB8 LINE L1 -111 6067 5008 254 171 184 13 chr4 25008275 25008351 -177319996 + L1M4 LINE L1 3004 3092 -3054 * 1065 84 0 0 chr4 25008472 25008603 -177319744 - AluSg SINE Alu -179 131 1 337 289 139 50 chr4 25009222 25009402 -177318945 + L2 LINE L2 3118 3313 0 287 291 78 10 chr4 25010043 25010146 -177318201 - MIR3 SINE MIR -49 159 50 231 146 0 0 chr4 25011222 25011263 -177317084 + (TG)n Simple_repeat Simple_repeat 1 41 0 236 273 20 0 chr4 25012160 25012259 -177316088 + (TTATA)n Simple_repeat Simple_repeat 5 105 0 31 26 0 0 chr4 25012964 25013002 -177315345 + AT_rich Low_complexity Low_complexity 1 38 0 24 0 0 0 chr4 25013278 25013302 -177315045 + AT_rich Low_complexity Low_complexity 1 24 0 2328 8 0 0 chr4 25013541 25013806 -177314541 + L1PA2 LINE L1 5889 6153 -2 289 368 50 5 chr4 25014112 25014313 -177314034 + L2 LINE L2 516 725 -2589 232 318 119 40 chr4 25014494 25014645 -177313702 + MER5B DNA MER1_type 16 178 0 423 358 90 27 chr4 25014659 25015245 -177313102 + L2 LINE L2 976 1598 -1716 465 298 58 24 chr4 25015279 25015484 -177312863 + MIR SINE MIR 38 249 -13 929 362 26 22 chr4 25015551 25016087 -177312260 + L2 LINE L2 1720 2257 -1057 232 308 26 83 chr4 25016097 25016253 -177312094 + MIR SINE MIR 7 153 -109 236 349 102 18 chr4 25016343 25016509 -177311838 + L2 LINE L2 2239 2418 -896 21 0 0 0 chr4 25016596 25016617 -177311730 + AT_rich Low_complexity Low_complexity 1 21 0 52 17 0 0 chr4 25016675 25016734 -177311613 + AT_rich Low_complexity Low_complexity 1 59 0 635 333 37 9 chr4 25016987 25017555 -177310792 - L1MEd LINE L1 -3345 3037 2454 23 0 0 0 chr4 25017607 25017630 -177310717 + AT_rich Low_complexity Low_complexity 1 23 0 314 326 81 0 chr4 25017950 25018122 -177310225 - L1MEd LINE L1 -4649 1735 1550 26 30 0 0 chr4 25018172 25018205 -177310142 + AT_rich Low_complexity Low_complexity 1 33 0 291 351 51 20 chr4 25018305 25018528 -177309819 + MIR SINE MIR 18 253 -9 569 320 56 2 chr4 25018683 25019103 -177309244 - L1MEd LINE L1 -4862 1510 1159 211 294 0 0 chr4 25019596 25019664 -177308683 + (TA)n Simple_repeat Simple_repeat 2 69 0 325 381 66 45 chr4 25019691 25020132 -177308215 + L2 LINE L2 2528 2977 -337 363 366 34 75 chr4 25020192 25020460 -177307887 + L2 LINE L2 2997 3253 -19 195 100 0 0 chr4 25021523 25021553 -177306794 + (T)n Simple_repeat Simple_repeat 1 30 0 22 35 0 0 chr4 25021822 25021851 -177306496 + AT_rich Low_complexity Low_complexity 1 29 0 481 329 46 32 chr4 25023439 25023655 -177304692 + MIR SINE MIR 44 262 0 309 327 27 9 chr4 25023639 25023749 -177304598 - MIR SINE MIR -99 163 52 * 21 36 0 0 chr4 25023782 25023810 -177304537 + AT_rich Low_complexity Low_complexity 1 28 0 2575 80 24 104 chr4 25023824 25024274 -177304073 + L1PA11 LINE L1 5757 6170 -4 24 32 0 0 chr4 25024282 25024313 -177304034 + AT_rich Low_complexity Low_complexity 1 31 0 1707 284 108 59 chr4 25024339 25025019 -177303328 - HAL1 LINE L1 -130 2377 1732 2409 149 23 30 chr4 25025019 25025455 -177302892 + Tigger2a DNA MER2_type 2 434 0 1707 284 108 59 chr4 25025455 25025539 -177302808 - HAL1 LINE L1 -775 1732 1654 1641 111 0 4 chr4 25025539 25025765 -177302582 + AluSq SINE Alu 86 310 -3 1707 284 108 59 chr4 25025765 25026517 -177301830 - HAL1 LINE L1 -853 1654 786 264 291 243 32 chr4 25026740 25027049 -177301298 - HAL1 LINE L1 -1896 611 238 321 238 25 25 chr4 25027160 25027240 -177301107 + MLT1G1 LTR MaLR 1 80 -515 1061 285 126 28 chr4 25027297 25027764 -177300583 + MLT1G1 LTR MaLR 83 595 0 357 198 25 12 chr4 25027782 25027863 -177300484 + HsTC2 DNA Tc2 1805 1886 -12 307 273 149 39 chr4 25027899 25028053 -177300294 - HAL1 LINE L1 -2328 179 9 342 0 0 0 chr4 25028127 25028165 -177300182 + (TG)n Simple_repeat Simple_repeat 2 39 0 1991 88 49 14 chr4 25028876 25029160 -177299187 + AluY SINE Alu 18 311 0 285 289 0 35 chr4 25029271 25029385 -177298962 + LTR67 LTR ERVL 445 554 -3 375 182 0 0 chr4 25030453 25030530 -177297817 + CT-rich Low_complexity Low_complexity 2 78 0 372 296 50 77 chr4 25032306 25032589 -177295758 - MIR SINE MIR 0 262 2 321 331 31 15 chr4 25033423 25033553 -177294794 - MIR3 SINE MIR -16 192 61 1937 246 74 33 chr4 25033734 25034345 -177294002 + MER92B LTR ERV1 1 636 0 458 322 25 25 chr4 25034426 25034628 -177293719 + MIR SINE MIR 49 250 -12 235 280 72 40 chr4 25034652 25034777 -177293570 - MIR SINE MIR -34 228 100 342 115 0 0 chr4 25035671 25035723 -177292624 + (TCCA)n Simple_repeat Simple_repeat 1 52 0 313 379 129 23 chr4 25036303 25036612 -177291735 + L2 LINE L2 2896 3237 -35 187 304 36 0 chr4 25036702 25036758 -177291589 + L2 LINE L2 2240 2297 -1017 220 344 43 43 chr4 25037067 25037160 -177291187 + L2 LINE L2 3106 3198 -74 273 302 123 0 chr4 25037363 25037469 -177290878 + MIR SINE MIR 138 256 -6 207 0 0 0 chr4 25038146 25038169 -177290178 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 282 306 22 15 chr4 25039235 25039369 -177288978 - MARNA DNA Mariner -305 281 147 226 135 19 58 chr4 25039330 25039382 -177288965 + MARNA DNA Mariner 399 448 -138 * 524 272 69 16 chr4 25039419 25039665 -177288682 + MIR SINE MIR 3 261 -1 305 252 65 9 chr4 25039732 25039839 -177288508 - MIR SINE MIR -73 189 77 359 322 63 21 chr4 25041812 25041955 -177286392 - MIR3 SINE MIR -28 180 32 289 384 0 27 chr4 25042267 25042413 -177285934 + MER117 DNA MER1_type 4 145 -52 249 83 0 0 chr4 25042687 25042723 -177285624 + (TG)n Simple_repeat Simple_repeat 2 37 0 222 303 71 20 chr4 25043700 25043799 -177284548 - L2 LINE L2 -8 3305 3202 324 190 16 99 chr4 25044312 25044344 -177284003 - L1ME4a LINE L1 -43 6078 6045 959 198 90 100 chr4 25044344 25044744 -177283603 + MSTD LTR MaLR 1 396 0 324 190 16 99 chr4 25044744 25044832 -177283515 - L1ME4a LINE L1 -76 6045 5968 306 147 29 29 chr4 25045490 25045558 -177282789 - MIR SINE MIR -138 124 57 467 280 47 66 chr4 25045656 25045867 -177282480 + L2 LINE L2 3107 3313 0 7211 223 65 31 chr4 25045939 25048825 -177279522 + L1MC1 LINE L1 18 3149 -3277 5517 207 30 40 chr4 25048832 25051108 -177277239 + L1MC1 LINE L1 4341 6613 0 785 347 70 37 chr4 25052955 25053645 -177274702 - L2 LINE L2 -85 3228 2508 21 0 0 0 chr4 25053873 25053894 -177274453 + AT_rich Low_complexity Low_complexity 1 21 0 350 260 97 19 chr4 25053910 25054064 -177274283 + L1ME4a LINE L1 5835 6000 -121 21 36 0 0 chr4 25054072 25054100 -177274247 + AT_rich Low_complexity Low_complexity 1 28 0 367 298 35 40 chr4 25055378 25055607 -177272740 + MER115 DNA AcHobo 2 226 -467 600 283 50 66 chr4 25055907 25056105 -177272242 - MER63B DNA MER1_type 0 1062 16 453 183 135 0 chr4 25056119 25056223 -177272124 + MER115 DNA AcHobo 568 685 -8 556 204 96 113 chr4 25056507 25056747 -177271600 - Charlie1 DNA MER1_type -2523 238 3 366 326 9 17 chr4 25057451 25057608 -177270739 - MER5A DNA MER1_type -22 156 12 1040 171 288 29 chr4 25057741 25058050 -177270297 + MLT1B LTR MaLR 2 390 0 216 245 19 0 chr4 25059312 25059365 -177268982 - MIR SINE MIR -108 154 101 298 242 30 0 chr4 25059471 25059537 -177268810 - MER81 DNA DNA 0 114 47 2179 100 10 0 chr4 25059657 25059946 -177268401 + AluSq SINE Alu 1 292 -21 548 262 55 14 chr4 25060307 25060452 -177267895 - MIR SINE MIR -110 152 2 2358 100 0 0 chr4 25060830 25061139 -177267208 + AluSc SINE Alu 1 309 0 280 281 11 22 chr4 25061191 25061280 -177267067 + L1M3de LINE L1 928 1015 -5638 1536 297 106 0 chr4 25061312 25061736 -177266611 + L1M3de LINE L1 935 1403 -5250 516 223 154 43 chr4 25061814 25062002 -177266345 - MLT1J LTR MaLR -203 308 100 395 203 0 0 chr4 25062774 25062848 -177265499 - MLT1B LTR MaLR 0 390 317 1021 166 34 0 chr4 25062848 25063023 -177265324 - MLT1B LTR MaLR -209 181 1 1982 132 7 13 chr4 25063138 25063441 -177264906 - AluY SINE Alu -8 303 3 806 276 134 16 chr4 25064131 25064497 -177263850 - MLT1I LTR MaLR 0 409 1 980 304 123 32 chr4 25064501 25065238 -177263109 - L2 LINE L2 0 3313 2500 221 323 16 0 chr4 25065562 25065624 -177262723 - L2 LINE L2 0 3272 3210 2413 68 0 0 chr4 25065751 25066079 -177262268 + AluY SINE Alu 1 328 0 617 277 68 10 chr4 25066126 25066332 -177262015 + MER58A DNA MER1_type 7 224 0 965 230 42 5 chr4 25067494 25067707 -177260640 + MER58A DNA MER1_type 1 221 -3 261 250 15 0 chr4 25068872 25068940 -177259407 + (TATATG)n Simple_repeat Simple_repeat 5 73 0 7214 194 84 43 chr4 25069101 25070786 -177257561 + MER52A LTR ERV1 1 1755 0 218 274 62 62 chr4 25072561 25072674 -177255673 + L2 LINE L2 2766 2878 -436 274 233 33 0 chr4 25072703 25072763 -177255584 + L2 LINE L2 3243 3304 -9 181 333 53 18 chr4 25072804 25072918 -177255429 + MIR SINE MIR 105 222 -40 376 378 60 16 chr4 25073038 25073287 -177255060 - MIR SINE MIR 0 262 3 259 104 15 45 chr4 25073423 25073490 -177254857 + (TTTTTG)n Simple_repeat Simple_repeat 4 68 0 253 221 189 21 chr4 25073720 25073815 -177254532 - MIR SINE MIR -89 173 63 1104 164 68 0 chr4 25076259 25076479 -177251868 + MER96B DNA MER1_type? 1 235 -182 439 325 98 0 chr4 25076807 25076970 -177251377 + MIR SINE MIR 51 229 -33 277 386 39 13 chr4 25077487 25077640 -177250707 - L2 LINE L2 -9 3263 3107 207 292 0 0 chr4 25078965 25079013 -177249334 - MER5A DNA MER1_type -86 103 56 662 203 35 7 chr4 25079851 25079994 -177248353 + MER69 DNA AcHobo 1 147 -2379 261 320 16 49 chr4 25080049 25080171 -177248176 + MIR SINE MIR 29 146 -62 182 133 0 44 chr4 25081039 25081055 -177247292 + (GAAA)n Simple_repeat Simple_repeat 3 18 -27 3952 23 0 0 chr4 25081055 25081486 -177246861 + SVA Other Other 955 1385 -1 182 133 0 44 chr4 25081486 25081514 -177246833 + (GAAA)n Simple_repeat Simple_repeat 18 45 0 407 306 155 9 chr4 25081515 25081734 -177246613 - MIR SINE MIR -1 261 11 35 0 0 0 chr4 25081767 25081802 -177246545 + AT_rich Low_complexity Low_complexity 1 35 0 2182 110 0 49 chr4 25081825 25082153 -177246194 + AluSx SINE Alu 1 312 0 279 403 35 7 chr4 25082783 25082927 -177245420 - L2 LINE L2 0 3272 3125 276 323 108 38 chr4 25083080 25083266 -177245081 + MIR SINE MIR 21 219 -43 529 225 33 8 chr4 25083794 25083914 -177244433 - LTR67 LTR ERVL 0 557 435 2235 120 0 0 chr4 25084180 25084488 -177243859 + AluSx SINE Alu 1 308 -4 402 271 135 8 chr4 25084888 25085021 -177243326 - MER5A DNA MER1_type 0 189 40 244 291 142 24 chr4 25085516 25085643 -177242704 + MIR3 SINE MIR 66 207 -1 2121 102 7 7 chr4 25087055 25087339 -177241008 + AluSx SINE Alu 1 284 -28 201 39 0 0 chr4 25087344 25087370 -177240977 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 792 270 116 36 chr4 25087549 25088258 -177240089 - L1ME3A LINE L1 -229 5941 5165 500 283 41 47 chr4 25088628 25089137 -177239210 - L1ME3A LINE L1 -2896 3250 2745 288 267 77 9 chr4 25089210 25089431 -177238916 - L1ME3A LINE L1 -3693 2453 2218 1690 181 0 26 chr4 25089440 25089750 -177238597 - AluJo SINE Alu -10 302 1 206 256 0 51 chr4 25089855 25089972 -177238375 + T-rich Low_complexity Low_complexity 1 111 0 233 355 37 32 chr4 25090394 25090583 -177237764 - HAL1 LINE L1 -947 1560 1371 345 340 44 22 chr4 25091365 25091636 -177236711 - L1ME4a LINE L1 -156 5965 5689 420 278 24 32 chr4 25092060 25092186 -177236161 - MIR SINE MIR -117 145 21 196 125 0 42 chr4 25094424 25094472 -177233875 + (GAAAA)n Simple_repeat Simple_repeat 3 48 0 583 293 81 16 chr4 25099533 25099853 -177228494 - L2 LINE L2 -259 3054 2720 483 330 127 60 chr4 25100004 25100571 -177227776 - L2 LINE L2 -337 2977 2373 255 304 36 0 chr4 25100817 25100929 -177227418 + (TATATG)n Simple_repeat Simple_repeat 3 118 0 181 393 92 30 chr4 25101008 25101336 -177227011 - L2 LINE L2 -842 2472 2125 21592 165 34 17 chr4 25102908 25104582 -177223765 - L1 LINE L1 -1346 6219 4574 2005 125 0 13 chr4 25104582 25104886 -177223461 - AluSc SINE Alu -9 300 1 21592 165 34 17 chr4 25104886 25107213 -177221134 - L1 LINE L1 -2991 4574 2070 510 46 0 0 chr4 25107213 25107278 -177221069 + (TC)n Simple_repeat Simple_repeat 2 66 0 21592 165 34 17 chr4 25107278 25109373 -177218974 - L1 LINE L1 -5495 2070 12 38 61 0 0 chr4 25109382 25109448 -177218899 + AT_rich Low_complexity Low_complexity 1 66 0 423 296 156 45 chr4 25109555 25109978 -177218369 - L1M4 LINE L1 -1112 5034 4565 1274 186 63 39 chr4 25110524 25110809 -177217538 + AluJo SINE Alu 1 292 -20 603 281 86 17 chr4 25111249 25111772 -177216575 - L1MEc LINE L1 -3284 2845 2287 21 0 0 0 chr4 25111951 25111972 -177216375 + AT_rich Low_complexity Low_complexity 1 21 0 12612 227 40 14 chr4 25112028 25112440 -177215907 - L1PA16 LINE L1 -1 7603 7203 2278 164 48 14 chr4 25112440 25112854 -177215493 + MSTA LTR MaLR 1 428 0 12612 227 40 14 chr4 25112854 25115028 -177213319 - L1PA16 LINE L1 -401 7203 5087 201 74 0 0 chr4 25115028 25115055 -177213292 + (TTG)n Simple_repeat Simple_repeat 3 29 0 12612 227 40 14 chr4 25115055 25117691 -177210656 - L1PA16 LINE L1 -2517 5087 2214 2677 97 11 3 chr4 25117840 25118212 -177210135 - THE1C LTR MaLR 0 375 1 691 273 99 51 chr4 25118653 25119482 -177208865 - L1MEc LINE L1 -4655 1655 787 24 32 0 0 chr4 25119991 25120022 -177208325 + AT_rich Low_complexity Low_complexity 1 31 0 957 191 122 39 chr4 25120255 25120588 -177207759 - MER113 DNA MER1_type? -74 447 87 389 200 0 0 chr4 25120588 25120668 -177207679 + MER116 DNA Mariner 1 80 0 197 360 98 49 chr4 25123034 25123198 -177205149 + MIR3 SINE MIR 10 181 -27 241 351 20 7 chr4 25123611 25123762 -177204585 - L1M4 LINE L1 -556 5628 5476 242 309 0 22 chr4 25124377 25124513 -177203834 - L1M4 LINE L1 -972 5387 5255 257 281 25 99 chr4 25124710 25124831 -177203516 - MLT1H LTR MaLR -6 543 432 484 313 98 34 chr4 25124862 25125127 -177203220 - MLT1H LTR MaLR -198 351 70 225 28 0 0 chr4 25125127 25125163 -177203184 - L1PA2 LINE L1 0 6155 6120 12911 37 0 0 chr4 25125178 25127495 -177200852 - L1PA4 LINE L1 -11 6144 3820 981 229 130 33 chr4 25127573 25127935 -177200412 + MLT2C1 LTR ERVL 1 397 0 31 92 0 0 chr4 25128037 25128124 -177200223 + AT_rich Low_complexity Low_complexity 1 87 0 912 236 76 18 chr4 25128267 25128597 -177199750 - L1MCa LINE L1 -4928 1636 1288 3055 257 52 38 chr4 25128608 25129611 -177198736 - L1MCa LINE L1 -4851 1194 178 444 19 0 0 chr4 25129647 25129700 -177198647 + (TG)n Simple_repeat Simple_repeat 1 53 0 279 0 0 0 chr4 25129851 25129864 -177198483 + (TG)n Simple_repeat Simple_repeat 1 44 0 279 0 0 0 chr4 25129864 25129895 -177198452 + (TG)n Simple_repeat Simple_repeat 2 32 0 227 420 23 0 chr4 25129936 25130067 -177198280 - L1MEc LINE L1 -5450 669 536 402 121 0 0 chr4 25130206 25130272 -177198075 + (TG)n Simple_repeat Simple_repeat 2 67 0 28 0 0 0 chr4 25130645 25130673 -177197674 + AT_rich Low_complexity Low_complexity 1 28 0 789 304 0 36 chr4 25130746 25130996 -177197351 + MIR SINE MIR 8 248 -14 259 311 56 0 chr4 25131517 25131607 -177196740 - L2 LINE L2 -46 3226 3132 236 432 76 0 chr4 25131667 25131852 -177196495 - L1MEc LINE L1 -5468 651 453 186 333 8 65 chr4 25131898 25132021 -177196326 - L2 LINE L2 -209 3063 2948 217 387 21 16 chr4 25132296 25132482 -177195865 - L2 LINE L2 -674 2640 2454 386 250 87 0 chr4 25133126 25133230 -177195117 - L2 LINE L2 -16 3256 3144 460 240 8 58 chr4 25133297 25133418 -177194929 + L2 LINE L2 3198 3312 -1 933 277 133 58 chr4 25133774 25134323 -177194024 + MLT1G LTR MaLR 6 590 0 402 149 11 21 chr4 25134418 25134512 -177193835 + T-rich Low_complexity Low_complexity 2 94 0 1484 176 66 84 chr4 25134972 25135410 -177192937 + MSTB1 LTR MaLR 1 430 -2 1803 151 21 7 chr4 25136524 25136825 -177191522 + AluSx SINE Alu 3 307 0 192 338 14 47 chr4 25137266 25137414 -177190933 + L2 LINE L2 192 334 -2980 783 338 106 36 chr4 25137419 25137843 -177190504 + L2 LINE L2 308 806 -2508 495 114 13 0 chr4 25137843 25137922 -177190425 + MADE1 DNA Mariner 1 80 0 783 338 106 36 chr4 25137922 25138225 -177190122 + L2 LINE L2 806 1086 -2228 314 189 18 0 chr4 25138244 25138312 -177190035 - MLT1A1 LTR MaLR 0 646 489 1440 214 137 28 chr4 25138315 25138762 -177189585 - MLT1E1 LTR MaLR -42 612 97 414 322 181 56 chr4 25138821 25139303 -177189044 + L2 LINE L2 1103 1644 -1670 233 180 0 0 chr4 25139342 25139392 -177188955 + L1MD3 LINE L1 7934 7983 -12 877 334 152 24 chr4 25139432 25140147 -177188200 + L2 LINE L2 1751 2557 -757 1256 257 56 10 chr4 25140295 25140632 -177187715 - MLT1A1 LTR MaLR -22 420 1 261 301 0 0 chr4 25140782 25140855 -177187492 + MER94 DNA DNA 62 134 0 348 335 23 34 chr4 25141036 25141212 -177187135 + L2 LINE L2 2174 2347 -967 253 306 54 0 chr4 25141201 25141312 -177187035 - MIR SINE MIR 0 262 146 * 1203 225 53 82 chr4 25141389 25141767 -177186580 - MLT2D LTR ERVL -41 373 7 419 323 39 23 chr4 25141785 25141915 -177186432 - MIR SINE MIR -120 142 11 1013 212 64 29 chr4 25142456 25142802 -177185545 + MSTD LTR MaLR 3 396 0 6824 223 21 49 chr4 25142802 25144587 -177183760 + MSTD-int LTR MaLR 1 1735 0 968 208 63 47 chr4 25144587 25144944 -177183403 + MSTD LTR MaLR 1 395 -1 184 382 15 0 chr4 25144989 25145057 -177183290 + L2 LINE L2 3245 3313 0 876 285 27 19 chr4 25145998 25146258 -177182089 + MIR SINE MIR 1 262 0 30 0 0 0 chr4 25146527 25146557 -177181790 + AT_rich Low_complexity Low_complexity 1 30 0 1312 163 0 0 chr4 25146956 25147165 -177181182 + MER2 DNA MER2_type 1 209 -136 29 28 0 0 chr4 25147187 25147223 -177181124 + AT_rich Low_complexity Low_complexity 1 36 0 232 333 0 12 chr4 25147420 25147501 -177180846 + MIR SINE MIR 26 105 -157 221 286 0 0 chr4 25147541 25147590 -177180757 + L2 LINE L2 3248 3296 -17 458 205 106 66 chr4 25147827 25147978 -177180369 - MLT1H1 LTR MaLR 0 595 439 681 321 31 63 chr4 25148075 25148458 -177179889 - MLT1H1 LTR MaLR -184 371 1 2330 102 0 0 chr4 25148515 25148818 -177179529 - AluSq SINE Alu -9 304 2 343 301 37 44 chr4 25148945 25149081 -177179266 + MIR SINE MIR 57 191 -71 459 326 32 83 chr4 25150227 25150662 -177177685 + L2 LINE L2 1902 2314 -1000 188 205 48 84 chr4 25150753 25150836 -177177511 + L2 LINE L2 2331 2410 -904 226 342 125 35 chr4 25151166 25151334 -177177013 + L2 LINE L2 2580 2731 -583 2447 114 17 3 chr4 25151334 25151693 -177176654 + THE1B LTR MaLR 1 364 0 226 342 125 35 chr4 25151693 25151843 -177176504 + L2 LINE L2 2731 2927 -387 206 367 64 9 chr4 25151984 25152093 -177176254 + L2 LINE L2 3158 3272 0 373 275 18 18 chr4 25153062 25153229 -177175118 + (CA)n Simple_repeat Simple_repeat 1 167 0 216 0 0 0 chr4 25153269 25153293 -177175054 + (CA)n Simple_repeat Simple_repeat 2 25 0 355 373 27 9 chr4 25153383 25153603 -177174744 + MIR SINE MIR 13 236 -26 217 343 14 0 chr4 25153724 25153797 -177174550 + L2 LINE L2 2445 2518 -796 260 290 224 9 chr4 25154069 25154176 -177174171 + L2 LINE L2 3142 3271 -1 6141 57 0 0 chr4 25155784 25156550 -177171797 - L1PA6 LINE L1 0 6154 5389 205 130 0 65 chr4 25156696 25156742 -177171605 - L2 LINE L2 0 3313 3271 4523 265 86 19 chr4 25156765 25159550 -177168797 - L1ME1 LINE L1 -3 6232 3250 753 254 43 47 chr4 25159612 25159643 -177168704 - L1ME1 LINE L1 -4555 1841 1811 2094 81 3 0 chr4 25159643 25159928 -177168419 - L1PA10 LINE L1 -4 6164 5879 753 254 43 47 chr4 25159928 25160175 -177168172 - L1ME1 LINE L1 -4585 1811 1564 627 224 64 0 chr4 25160277 25160402 -177167945 - FLAM_C SINE Alu 0 133 1 1164 157 93 25 chr4 25160404 25160684 -177167663 - L1MC3 LINE L1 -7 7778 7480 337 279 15 73 chr4 25160724 25160928 -177167419 - L1ME1 LINE L1 -4910 1307 1116 2347 265 18 31 chr4 25160937 25161715 -177166632 - L1ME1 LINE L1 -5395 1001 234 998 289 113 20 chr4 25161747 25162197 -177166150 + L2 LINE L2 2081 2572 -742 2478 194 49 16 chr4 25162444 25163016 -177165331 - L1MD3 LINE L1 -1 7994 7404 273 250 48 48 chr4 25163016 25163100 -177165247 - MLT1F1 LTR MaLR -442 125 42 803 206 25 0 chr4 25163105 25163309 -177165038 - L1MD3 LINE L1 -920 7075 6867 207 100 0 0 chr4 25165602 25165632 -177162715 + (A)n Simple_repeat Simple_repeat 1 30 0 190 318 0 16 chr4 25166730 25166793 -177161554 + L2 LINE L2 3207 3268 -4 192 354 15 15 chr4 25166819 25166884 -177161463 - L3b LINE CR1 -5 1578 1514 * 297 284 14 92 chr4 25166880 25167021 -177161326 - MIR3 SINE MIR -43 165 36 534 154 0 28 chr4 25168384 25168527 -177159820 + CT-rich Low_complexity Low_complexity 2 140 0 1942 125 86 49 chr4 25168815 25169223 -177159124 - L1MA7 LINE L1 -6 6285 5863 389 178 20 8 chr4 25169219 25169321 -177159026 + L1MA7 LINE L1 5746 5843 -340 * 3437 149 45 16 chr4 25169567 25170213 -177158134 + L1PB4 LINE L1 5491 6155 -1 28 0 0 0 chr4 25170343 25170371 -177157976 + AT_rich Low_complexity Low_complexity 1 28 0 889 192 0 0 chr4 25170526 25170693 -177157654 + L1MB2 LINE L1 5998 6164 -7 2165 114 21 0 chr4 25171239 25171529 -177156818 + AluSx SINE Alu 1 296 -16 491 85 12 37 chr4 25171955 25172037 -177156310 - MADE1 DNA Mariner 0 80 1 2083 186 96 4 chr4 25172037 25172527 -177155820 - L1MA8 LINE L1 -12 6279 5745 3016 88 55 2 chr4 25172527 25172558 -177155789 - MLT2A1 LTR ERVL 0 444 416 252 59 0 0 chr4 25172558 25172592 -177155755 + (TA)n Simple_repeat Simple_repeat 2 35 0 3016 88 55 2 chr4 25172592 25172982 -177155365 - MLT2A1 LTR ERVL -28 416 1 42945 82 11 9 chr4 25172982 25178623 -177149724 - HERVL-A1-A1 LTR ERVL 0 5654 1 3345 76 7 11 chr4 25178623 25179069 -177149278 - MLT2A1 LTR ERVL 0 444 1 5775 184 60 8 chr4 25179073 25180765 -177147582 - L1MA8 LINE L1 -546 5745 3956 1781 168 26 45 chr4 25181300 25181682 -177146665 - THE1C LTR MaLR 0 375 1 2018 89 41 0 chr4 25181921 25182192 -177146155 - AluSx SINE Alu 0 312 31 3636 229 58 53 chr4 25182219 25183483 -177144864 + L1MC4 LINE L1 6772 8041 -1 197 345 67 17 chr4 25183509 25183628 -177144719 - L2 LINE L2 -12 3260 3136 209 300 38 25 chr4 25183702 25183782 -177144565 + L2 LINE L2 2700 2780 -534 251 250 25 25 chr4 25183801 25183881 -177144466 + MER117 DNA MER1_type 12 91 -106 1821 206 85 2 chr4 25183946 25184369 -177143978 - MLT1C LTR MaLR -2 465 8 413 339 24 6 chr4 25184599 25184767 -177143580 + L2 LINE L2 3118 3288 -25 2273 135 35 65 chr4 25187387 25187818 -177140529 - MSTB1 LTR MaLR -12 420 3 2744 243 35 6 chr4 25188086 25188719 -177139628 + MER82 DNA MER2_type 2 652 -1 213 344 46 92 chr4 25189070 25189288 -177139059 - L2 LINE L2 -36 3236 3029 785 280 0 0 chr4 25189691 25189877 -177138470 + MER5A DNA MER1_type 4 189 0 445 282 154 6 chr4 25190221 25190377 -177137970 + MER5A DNA MER1_type 11 189 0 552 294 112 11 chr4 25190502 25190689 -177137658 - MIR SINE MIR -21 241 36 1905 158 57 14 chr4 25191206 25191555 -177136792 - THE1B LTR MaLR 0 364 1 822 276 22 4 chr4 25192680 25192905 -177135442 + L3b LINE CR1 1109 1337 -246 2108 139 0 19 chr4 25193011 25193328 -177135019 + AluSx SINE Alu 1 311 -1 234 0 0 0 chr4 25194723 25194749 -177133598 + (T)n Simple_repeat Simple_repeat 1 26 0 269 268 24 47 chr4 25195035 25195162 -177133185 + LTR67 LTR ERVL 432 555 -2 358 366 26 21 chr4 25195375 25195569 -177132778 + L3 LINE CR1 586 780 -797 3656 192 47 46 chr4 25195576 25196440 -177131907 - L1MB8 LINE L1 0 6178 5303 2398 74 0 7 chr4 25196440 25196738 -177131609 - AluY SINE Alu -15 296 1 3656 192 47 46 chr4 25196738 25197431 -177130916 - L1MB8 LINE L1 -875 5303 4613 21 0 0 0 chr4 25197801 25197822 -177130525 + AT_rich Low_complexity Low_complexity 1 21 0 364 317 77 40 chr4 25198569 25199827 -177128520 - L1M4 LINE L1 -953 5193 3889 1405 230 74 35 chr4 25199848 25200347 -177128000 + L1MA9 LINE L1 5766 6289 -23 370 307 14 0 chr4 25200551 25200691 -177127656 - L1M4 LINE L1 -2581 3565 3424 477 268 24 8 chr4 25200952 25201075 -177127272 - L2 LINE L2 0 3313 3189 22 35 0 0 chr4 25201289 25201318 -177127029 + AT_rich Low_complexity Low_complexity 1 29 0 250 297 214 6 chr4 25201538 25201720 -177126627 - HAL1 LINE L1 -784 1723 1504 24 0 0 0 chr4 25201749 25201773 -177126574 + AT_rich Low_complexity Low_complexity 1 24 0 346 348 57 54 chr4 25201853 25202169 -177126178 - L1MEd LINE L1 -4886 1233 917 270 256 33 8 chr4 25203289 25203410 -177124937 + (TTATA)n Simple_repeat Simple_repeat 1 124 0 24 0 0 0 chr4 25204925 25204949 -177123398 + AT_rich Low_complexity Low_complexity 1 24 0 190 382 11 22 chr4 25205206 25205295 -177123052 - MER5A DNA MER1_type -38 151 64 301 100 0 0 chr4 25205295 25205335 -177123012 + LTR7 LTR ERV1 1 40 -410 2177 157 45 23 chr4 25205355 25205795 -177122552 + LTR7 LTR ERV1 1 450 0 932 188 188 17 chr4 25206190 25206424 -177121923 + AluSg1 SINE Alu 3 276 -33 752 121 13 32 chr4 25206427 25206584 -177121763 + (GGAA)n Simple_repeat Simple_repeat 3 156 0 229 352 11 23 chr4 25206604 25206692 -177121655 + MER5B DNA MER1_type 17 103 -75 1361 179 17 96 chr4 25206692 25207058 -177121289 + MLT1A2 LTR MaLR 1 431 -36 367 184 112 0 chr4 25207261 25207359 -177120988 + MLT1B LTR MaLR 27 135 -255 805 215 0 29 chr4 25207675 25207847 -177120500 - MLT1A1 LTR MaLR -198 167 1 2393 151 39 10 chr4 25208117 25208533 -177119814 + MSTA LTR MaLR 1 428 0 21 0 0 0 chr4 25208786 25208807 -177119540 + AT_rich Low_complexity Low_complexity 1 21 0 398 355 79 18 chr4 25208880 25209108 -177119239 + MIR SINE MIR 20 261 -1 1171 196 96 29 chr4 25209325 25209637 -177118710 - MLT1A1 LTR MaLR -31 334 2 835 295 87 38 chr4 25210476 25211005 -177117342 - MLT1H1 LTR MaLR 0 555 1 21 0 0 0 chr4 25211123 25211144 -177117203 + AT_rich Low_complexity Low_complexity 1 21 0 258 32 0 0 chr4 25212187 25212218 -177116129 + (T)n Simple_repeat Simple_repeat 1 31 0 332 266 138 9 chr4 25212408 25212517 -177115830 + MLT1K LTR MaLR 395 517 -71 230 233 0 0 chr4 25212527 25212570 -177115777 + (CA)n Simple_repeat Simple_repeat 2 44 0 201 39 0 0 chr4 25212571 25212597 -177115750 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 468 254 52 94 chr4 25213023 25213310 -177115037 - MLT1I LTR MaLR -21 388 114 601 223 40 34 chr4 25213557 25213705 -177114642 - LTR48B LTR ERV1 0 644 496 301 278 35 0 chr4 25213716 25213831 -177114516 - LTR49-int LTR ERV1 -2300 3963 3845 404 238 26 90 chr4 25213907 25214096 -177114251 - LTR49-int LTR ERV1 -2686 3577 3401 418 250 88 63 chr4 25214117 25214401 -177113946 - LTR49-int LTR ERV1 -2960 1976 1686 21 57 0 0 chr4 25214489 25214524 -177113823 + AT_rich Low_complexity Low_complexity 1 35 0 4534 157 20 25 chr4 25214526 25214891 -177113456 - L1PB3 LINE L1 -7 6147 5782 243 0 0 0 chr4 25214891 25214918 -177113429 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 2136 88 22 0 chr4 25214918 25215192 -177113155 - AluSc SINE Alu -29 280 1 4534 157 20 25 chr4 25215192 25216055 -177112292 - L1PB3 LINE L1 -370 5784 4918 363 215 128 27 chr4 25216075 25216224 -177112123 - LTR57-int LTR ERVL -3919 1424 1261 * 558 237 17 25 chr4 25216179 25216406 -177111941 - LTR49-int LTR ERV1 -3202 3129 1146 739 234 88 119 chr4 25216415 25216980 -177111367 - LTR49-int LTR ERV1 -4228 2103 1556 232 288 15 0 chr4 25217918 25217984 -177110363 - tRNA-Glu-GAG tRNA tRNA -2 73 7 24 0 0 0 chr4 25218044 25218068 -177110279 + AT_rich Low_complexity Low_complexity 1 24 0 69 48 0 0 chr4 25218168 25218272 -177110075 + AT_rich Low_complexity Low_complexity 1 104 0 1908 225 47 79 chr4 25218336 25219377 -177108970 - L1MDa LINE L1 -2852 3688 2681 6244 237 117 28 chr4 25219391 25219669 -177108678 - L1MDa LINE L1 -3945 2595 2343 243 88 0 0 chr4 25219669 25219703 -177108644 + (TG)n Simple_repeat Simple_repeat 1 34 0 6244 237 117 28 chr4 25219703 25221791 -177106556 - L1MDa LINE L1 -4197 2343 18 445 331 11 27 chr4 25222190 25222374 -177105973 - MIR SINE MIR -70 192 12 223 267 0 0 chr4 25222796 25222841 -177105506 - L2 LINE L2 -18 3254 3210 2342 72 0 3 chr4 25223047 25223379 -177104968 - AluY SINE Alu 0 331 1 1598 121 0 0 chr4 25223384 25223632 -177104715 - L1MA2 LINE L1 0 6304 6057 4594 128 24 28 chr4 25224219 25224831 -177103516 - L1MA2 LINE L1 -232 6072 5471 2383 100 0 0 chr4 25224831 25225132 -177103215 + AluSc SINE Alu 2 302 -7 4594 128 24 28 chr4 25225132 25225731 -177102616 - L1MA2 LINE L1 -833 5471 4871 1263 246 3 0 chr4 25225731 25226044 -177102303 - L1 LINE L1 -3458 4107 3794 * 4545 182 42 0 chr4 25226042 25226855 -177101492 - L1 LINE L1 -5932 1633 787 241 349 46 9 chr4 25227074 25227183 -177101164 - L2 LINE L2 -3 3310 3198 288 293 66 34 chr4 25227306 25227472 -177100875 - L2 LINE L2 -189 3083 2911 288 339 58 5 chr4 25228298 25228522 -177099825 - L2 LINE L2 -1 3312 3077 595 336 138 15 chr4 25228536 25228602 -177099745 - L2 LINE L2 -164 3149 3093 587 281 151 52 chr4 25228602 25228813 -177099534 - MLT1H1 LTR MaLR 0 555 366 192 40 0 0 chr4 25228813 25228838 -177099509 + (TC)n Simple_repeat Simple_repeat 2 26 0 587 281 151 52 chr4 25228838 25229131 -177099216 - MLT1H1 LTR MaLR -189 366 1 595 336 138 15 chr4 25229131 25229595 -177098752 - L2 LINE L2 -220 3093 2555 279 337 0 6 chr4 25229598 25229802 -177098545 + (TA)n Simple_repeat Simple_repeat 1 202 0 1032 201 112 5 chr4 25229843 25230057 -177098290 + MER8 DNA MER2_type 3 239 0 192 289 165 16 chr4 25230155 25230276 -177098071 - L2 LINE L2 -782 2532 2394 545 333 29 24 chr4 25230460 25230706 -177097641 + MIR SINE MIR 6 252 -10 1756 186 3 22 chr4 25231647 25231965 -177096382 - AluJb SINE Alu 0 312 1 16301 166 71 11 chr4 25232316 25239469 -177088878 + L1PA14 LINE L1 5 7597 -2 572 317 95 18 chr4 25239763 25240047 -177088300 + L2 LINE L2 3008 3313 0 192 306 0 20 chr4 25240186 25240235 -177088112 + MIR SINE MIR 19 66 -196 195 313 37 75 chr4 25240373 25240507 -177087840 - MER5A DNA MER1_type -6 183 55 931 353 46 15 chr4 25240877 25241396 -177086951 - L2 LINE L2 -944 2370 1836 196 268 56 0 chr4 25241426 25241497 -177086850 + MIR SINE MIR 118 192 -70 264 382 49 0 chr4 25242065 25242209 -177086138 - MIR SINE MIR -76 186 36 21 36 0 0 chr4 25242383 25242411 -177085936 + AT_rich Low_complexity Low_complexity 1 28 0 1427 221 13 45 chr4 25242621 25242996 -177085351 - MLT1A1 LTR MaLR -2 363 1 821 213 128 27 chr4 25243273 25243531 -177084816 + L1MA10 LINE L1 6050 6333 -1 767 123 0 0 chr4 25244050 25244164 -177084183 + L1PA7 LINE L1 1 114 -6347 * 3652 99 11 0 chr4 25244163 25244707 -177083640 + L1PA7 LINE L1 4259 4808 -1653 6768 72 2 1 chr4 25244708 25246420 -177081927 + L1PA7 LINE L1 4744 6458 -11 2652 84 5 10 chr4 25247014 25247407 -177080940 - THE1B-int LTR MaLR -1188 392 2 1920 140 23 26 chr4 25247408 25247750 -177080597 - THE1B LTR MaLR 0 364 24 20809 25 0 1 chr4 25247852 25250679 -177077668 + L1P1 LINE L1 2789 5614 -541 22474 42 44 3 chr4 25250779 25253751 -177074596 - L1P LINE L1 -3052 3094 1 2856 161 18 4 chr4 25253750 25254240 -177074107 - L1PA15-16 LINE L1 -5297 1552 1056 * 3346 180 22 8 chr4 25254242 25254910 -177073437 - L1MC3 LINE L1 -989 6796 6119 399 295 91 50 chr4 25255455 25255838 -177072509 - L1MC5 LINE L1 -276 7685 7287 454 238 34 27 chr4 25255972 25256181 -177072166 - L1MC4 LINE L1 -737 7224 7049 378 327 112 48 chr4 25256599 25257098 -177071249 - L1MC4a LINE L1 -1180 6628 6098 390 262 215 3 chr4 25257163 25257461 -177070886 - L1MC4a LINE L1 -1778 6030 5670 269 144 0 99 chr4 25257556 25257667 -177070680 + (TTA)n Simple_repeat Simple_repeat 1 100 0 21 36 0 0 chr4 25258322 25258350 -177069997 + AT_rich Low_complexity Low_complexity 1 28 0 1297 111 0 0 chr4 25258701 25258872 -177069475 - AluSg/x SINE Alu -7 305 135 4082 223 26 42 chr4 25260609 25261639 -177066708 + L1PA12 LINE L1 862 1907 -5677 1715 125 19 106 chr4 25261639 25261960 -177066387 + AluSx SINE Alu 1 293 -19 4082 223 26 42 chr4 25261960 25262260 -177066087 + L1PA12 LINE L1 1907 2210 -5374 2154 127 3 3 chr4 25262260 25262568 -177065779 + AluSx SINE Alu 1 308 -4 4082 223 26 42 chr4 25262568 25263142 -177065205 + L1PA12 LINE L1 2210 3541 -4043 * 6856 230 26 7 chr4 25263133 25264671 -177063676 + L1P LINE L1 3762 5329 -817 403 159 0 0 chr4 25264671 25264740 -177063607 + AluS SINE Alu 1 69 -242 349 91 15 0 chr4 25265369 25265435 -177062912 - L1P LINE L1 -845 5329 5263 420 55 0 0 chr4 25265752 25265807 -177062540 + (CA)n Simple_repeat Simple_repeat 2 56 0 344 192 0 0 chr4 25269666 25269739 -177058608 + L1MB8 LINE L1 6094 6166 -12 207 0 0 0 chr4 25270484 25270507 -177057840 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2202 118 0 0 chr4 25271201 25271497 -177056850 - AluSg SINE Alu -10 300 5 312 70 0 0 chr4 25271646 25271689 -177056658 + (CA)n Simple_repeat Simple_repeat 2 44 0 213 231 0 0 chr4 25272422 25272474 -177055873 + (CATA)n Simple_repeat Simple_repeat 3 54 0 1215 274 47 31 chr4 25272499 25273248 -177055099 + L1M4c LINE L1 1275 2203 -4181 26 30 0 0 chr4 25273277 25273310 -177055037 + AT_rich Low_complexity Low_complexity 1 33 0 1151 72 0 0 chr4 25273468 25273621 -177054726 - L1PA6 LINE L1 -6 6148 5996 21 36 0 0 chr4 25273810 25273838 -177054509 + AT_rich Low_complexity Low_complexity 1 28 0 2231 102 0 10 chr4 25274563 25274857 -177053490 - AluSg SINE Alu -19 291 1 1800 293 64 7 chr4 25275180 25275787 -177052560 - L2 LINE L2 -357 2957 2316 1695 230 39 23 chr4 25275823 25276262 -177052085 + MLT1C LTR MaLR 6 451 -16 189 0 0 0 chr4 25278016 25278037 -177050310 + (TA)n Simple_repeat Simple_repeat 1 21 0 * 261 0 0 0 chr4 25278036 25278065 -177050282 + (GA)n Simple_repeat Simple_repeat 2 30 0 251 221 0 13 chr4 25278089 25278166 -177050181 + (TATG)n Simple_repeat Simple_repeat 1 76 0 255 61 0 0 chr4 25278171 25278204 -177050143 + (CA)n Simple_repeat Simple_repeat 2 34 0 213 246 0 35 chr4 25278214 25278271 -177050076 + L2 LINE L2 3259 3313 0 413 250 128 20 chr4 25278431 25278579 -177049768 + MIR SINE MIR 75 238 -24 24 0 0 0 chr4 25278949 25278973 -177049374 + AT_rich Low_complexity Low_complexity 1 24 0 1091 77 0 0 chr4 25280359 25280489 -177047858 - AluSq/x SINE Alu -181 132 3 4539 159 21 4 chr4 25280491 25281316 -177047031 - L1MA4 LINE L1 -237 6063 5229 747 213 22 6 chr4 25281521 25281704 -177046643 - L1MC3 LINE L1 -7 7778 7593 2943 12 0 12 chr4 25281806 25282129 -177046218 + L1HS LINE L1 5815 6135 -20 203 0 37 0 chr4 25282129 25282156 -177046191 + (TAA)n Simple_repeat Simple_repeat 3 30 0 2943 12 0 12 chr4 25282156 25282176 -177046171 + L1HS LINE L1 6135 6154 -1 209 0 97 0 chr4 25282570 25282601 -177045746 + A-rich Low_complexity Low_complexity 3 36 0 12751 207 32 8 chr4 25282602 25285219 -177043128 + L1PA16 LINE L1 1535 4088 -2781 273 29 0 0 chr4 25285219 25285253 -177043094 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 12751 207 32 8 chr4 25285253 25287834 -177040513 + L1PA16 LINE L1 4088 6860 -9 27 0 0 0 chr4 25287834 25287861 -177040486 + AT_rich Low_complexity Low_complexity 1 27 0 335 242 0 116 chr4 25287868 25287931 -177040416 + L1MC3 LINE L1 6793 6862 -923 246 81 0 0 chr4 25287931 25287968 -177040379 + (CA)n Simple_repeat Simple_repeat 1 37 0 335 242 0 116 chr4 25287968 25288102 -177040245 + L1MC3 LINE L1 6862 6967 -818 * 1035 160 17 0 chr4 25288096 25288271 -177040076 + L1P4 LINE L1 5523 5700 -466 471 191 82 0 chr4 25288290 25288400 -177039947 + L1MC3 LINE L1 6980 7098 -687 294 231 15 0 chr4 25288401 25288466 -177039881 + MLT1F1 LTR MaLR 37 102 -465 1598 163 41 0 chr4 25288497 25288792 -177039555 + L1MC3 LINE L1 7230 7536 -249 308 298 24 0 chr4 25288792 25288876 -177039471 + L1MC4 LINE L1 6618 6703 -1339 271 330 132 48 chr4 25290051 25290278 -177038069 - L2 LINE L2 -2 3270 3025 206 328 86 11 chr4 25290688 25290874 -177037473 - L2 LINE L2 -924 2390 2191 1536 175 60 35 chr4 25290916 25291282 -177037065 + THE1C LTR MaLR 1 375 0 228 314 15 66 chr4 25291354 25291491 -177036856 - MER5B DNA MER1_type -20 158 29 335 221 29 29 chr4 25292033 25292137 -177036210 + L1ME4a LINE L1 5808 5911 -210 299 255 61 51 chr4 25292571 25292669 -177035678 + L2 LINE L2 3184 3282 -31 4758 213 15 18 chr4 25294506 25294769 -177033578 - L1 LINE L1 -1610 4536 4274 1542 169 26 55 chr4 25294769 25294930 -177033417 - MER44D DNA MER2_type -1883 608 444 2205 134 0 0 chr4 25294930 25295237 -177033110 + AluSx SINE Alu 1 307 -5 1542 169 26 55 chr4 25295237 25295423 -177032924 - MER44D DNA MER2_type -2047 444 1 4758 213 15 18 chr4 25295423 25296263 -177032084 - L1 LINE L1 -1872 4274 3436 2607 218 17 30 chr4 25296260 25296957 -177031390 + L1 LINE L1 4552 5239 -907 * 1863 195 19 3 chr4 25297062 25297421 -177030926 - L1MC3 LINE L1 -226 7977 7613 393 209 11 11 chr4 25297424 25297515 -177030832 - MLT1F1 LTR MaLR -442 125 35 417 218 89 0 chr4 25297515 25297639 -177030708 - L1MC3 LINE L1 -692 7511 7377 272 167 0 0 chr4 25297639 25297687 -177030660 - MLT2D LTR ERVL 0 414 367 180 0 0 0 chr4 25297712 25297732 -177030615 + (TG)n Simple_repeat Simple_repeat 2 21 0 1603 190 6 35 chr4 25297732 25298048 -177030299 - MLT2D LTR ERVL -40 374 68 614 186 46 131 chr4 25298048 25298285 -177030062 - L1MC3 LINE L1 -847 7356 7140 1349 75 0 0 chr4 25298289 25298463 -177029884 + AluY SINE Alu 137 310 -1 6909 234 55 65 chr4 25298463 25299253 -177029094 - L1MC3 LINE L1 -743 5821 5025 1706 182 39 0 chr4 25299253 25299366 -177028981 + AluJb SINE Alu 7 114 -198 180 0 0 0 chr4 25299366 25299386 -177028961 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1706 182 39 0 chr4 25299386 25299552 -177028795 + AluJb SINE Alu 114 297 -15 6909 234 55 65 chr4 25299552 25300324 -177028023 - L1MC3 LINE L1 -1539 5025 4247 2165 100 29 16 chr4 25300324 25300633 -177027714 - AluSq SINE Alu 0 313 1 6909 234 55 65 chr4 25300633 25301374 -177026973 - L1MC3 LINE L1 -2317 4247 3500 637 195 35 40 chr4 25301374 25301591 -177026756 - AluJb SINE Alu 0 339 124 6909 234 55 65 chr4 25301591 25303892 -177024455 - L1MC3 LINE L1 -3064 3500 2414 479 241 9 0 chr4 25303901 25304013 -177024334 + LTR48B LTR ERV1 530 642 -2 992 222 121 70 chr4 25304050 25304406 -177023941 - MLT1A2 LTR MaLR 0 374 1 1909 243 55 48 chr4 25304406 25305717 -177022630 - L1MC3 LINE L1 -4238 2327 570 1073 262 96 19 chr4 25305815 25306128 -177022219 - L1MC3 LINE L1 -5484 561 225 660 199 21 14 chr4 25306130 25306271 -177022076 + MLT1A1 LTR MaLR 1 142 -223 2382 214 27 32 chr4 25306276 25306979 -177021368 - LTR27 LTR ERV1 -2 634 3 11038 140 14 24 chr4 25306979 25309047 -177019300 - LTR27-int LTR ERV1 -1 6995 4908 2126 89 28 17 chr4 25309047 25309338 -177019009 + AluY SINE Alu 3 296 -15 11038 140 14 24 chr4 25309338 25309399 -177018948 - LTR27-int LTR ERV1 -2088 4908 2231 1214 193 41 0 chr4 25309399 25309617 -177018730 + MLT1A1 LTR MaLR 139 365 0 338 296 39 69 chr4 25309618 25309871 -177018476 - L1MC3 LINE L1 -5819 296 1 1576 211 3 0 chr4 25309887 25310171 -177018176 - AluJb SINE Alu -27 285 1 624 158 10 0 chr4 25310317 25310418 -177017929 - LTR29 LTR ERV1 0 622 521 427 208 233 0 chr4 25310536 25310656 -177017691 - AluJo SINE Alu -152 160 13 1710 174 49 30 chr4 25310657 25311025 -177017322 - THE1C LTR MaLR 0 375 1 833 338 68 21 chr4 25311720 25312039 -177016308 + L2 LINE L2 2776 3129 -184 2212 119 0 0 chr4 25312039 25312341 -177016006 - AluSg SINE Alu -8 302 1 833 338 68 21 chr4 25312341 25312536 -177015811 + L2 LINE L2 3129 3313 0 2181 147 28 6 chr4 25313419 25313773 -177014574 - THE1B LTR MaLR 0 364 3 1826 182 22 14 chr4 25313961 25314323 -177014024 + MLT1A1 LTR MaLR 1 365 0 233 343 155 17 chr4 25314742 25314923 -177013424 - MIR SINE MIR -37 225 20 327 225 0 0 chr4 25315287 25315358 -177012989 - L1ME LINE L1 -312 5809 5739 21 0 0 0 chr4 25315494 25315515 -177012832 + AT_rich Low_complexity Low_complexity 1 21 0 312 328 8 32 chr4 25315534 25315659 -177012688 + L2 LINE L2 3162 3283 -30 186 71 0 0 chr4 25316247 25316275 -177012072 + (A)n Simple_repeat Simple_repeat 1 28 0 2102 67 35 58 chr4 25316319 25316631 -177011716 - AluY SINE Alu -6 305 1 620 315 80 5 chr4 25316634 25316847 -177011500 - MIR SINE MIR -14 248 20 474 330 34 29 chr4 25316967 25317176 -177011171 - MIR SINE MIR -36 226 17 293 269 32 0 chr4 25317185 25317278 -177011069 + CT-rich Low_complexity Low_complexity 3 98 0 439 127 25 42 chr4 25317373 25317484 -177010863 + CT-rich Low_complexity Low_complexity 4 114 -5 1747 147 0 39 chr4 25317484 25317763 -177010584 - AluJb SINE Alu -44 268 1 201 174 22 0 chr4 25317915 25317961 -177010386 + (AAATG)n Simple_repeat Simple_repeat 3 49 0 269 348 169 0 chr4 25318619 25318737 -177009610 - L2 LINE L2 -1 3271 3134 27 49 0 0 chr4 25319192 25319233 -177009114 + AT_rich Low_complexity Low_complexity 1 41 0 448 254 60 43 chr4 25319236 25319468 -177008879 + L1M4 LINE L1 3754 3989 -2157 644 327 59 32 chr4 25319485 25319892 -177008455 - LTR16A LTR ERVL -20 430 13 275 279 0 0 chr4 25320009 25320095 -177008252 + L1M4 LINE L1 4151 4236 -1910 697 288 97 64 chr4 25320476 25320946 -177007401 + HAL1b LINE L1 328 836 -512 1831 158 0 4 chr4 25320946 25321224 -177007123 + AluJo SINE Alu 15 291 -21 697 288 97 64 chr4 25321224 25321524 -177006823 + HAL1b LINE L1 836 1124 -224 30 109 0 0 chr4 25321679 25321807 -177006540 + AT_rich Low_complexity Low_complexity 1 128 0 287 336 28 5 chr4 25321893 25322104 -177006243 + L1M4 LINE L1 4397 4612 -1534 223 167 45 0 chr4 25322161 25322227 -177006120 + (TA)n Simple_repeat Simple_repeat 2 70 0 183 100 0 0 chr4 25322505 25322535 -177005812 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 330 277 148 19 chr4 25322796 25322951 -177005396 + MER69A DNA AcHobo 3 177 0 502 229 54 42 chr4 25323078 25323244 -177005103 - MIR SINE MIR -3 259 92 240 218 56 106 chr4 25323499 25323641 -177004706 + HAL1b LINE L1 1199 1333 -15 300 292 95 54 chr4 25324792 25324960 -177003387 + MIR SINE MIR 2 176 -86 509 306 8 0 chr4 25325059 25325193 -177003154 - MIR SINE MIR -106 156 22 28 48 0 0 chr4 25325194 25325236 -177003111 + AT_rich Low_complexity Low_complexity 1 42 0 226 214 0 0 chr4 25325504 25325546 -177002801 + (TG)n Simple_repeat Simple_repeat 1 42 0 1900 217 76 24 chr4 25326210 25326629 -177001718 + MLT2B1 LTR ERVL 1 441 -79 1202 185 141 0 chr4 25326652 25326950 -177001397 + MER2 DNA MER2_type 2 341 -3 3176 242 35 98 chr4 25326961 25327056 -177001291 + MLT1A1-int LTR MaLR 5 104 -1631 2463 115 11 13 chr4 25327056 25327430 -177000917 - THE1C LTR MaLR 0 375 3 9414 134 30 58 chr4 25327432 25329058 -176999289 - THE1C-int LTR MaLR -1 1579 1 2599 111 11 0 chr4 25329058 25329429 -176998918 - THE1C LTR MaLR 0 375 1 3176 242 35 98 chr4 25329429 25330801 -176997546 + MLT1A1-int LTR MaLR 103 1735 0 1128 241 88 29 chr4 25330801 25330891 -176997456 + MLT1A1 LTR MaLR 4 87 -278 2136 142 37 3 chr4 25330891 25331243 -176997104 - THE1B LTR MaLR 0 364 1 1128 241 88 29 chr4 25331243 25331493 -176996854 + MLT1A1 LTR MaLR 87 364 -1 1194 320 61 7 chr4 25331659 25332118 -176996229 - MLT1J LTR MaLR -27 484 1 379 252 164 42 chr4 25332459 25332697 -176995650 + MLT1L LTR MaLR 22 288 -327 23 0 0 0 chr4 25334179 25334202 -176994145 + AT_rich Low_complexity Low_complexity 1 23 0 293 250 75 12 chr4 25334603 25334683 -176993664 - L2 LINE L2 -40 3232 3148 195 42 0 0 chr4 25334707 25334731 -176993616 + (CAA)n Simple_repeat Simple_repeat 1 24 0 344 237 53 18 chr4 25335053 25335167 -176993180 - MLT1J1 LTR MaLR -1 445 328 363 78 0 0 chr4 25335482 25335533 -176992814 + (TGGA)n Simple_repeat Simple_repeat 3 53 0 274 235 34 109 chr4 25336735 25336854 -176991493 - MIR SINE MIR -64 198 89 379 356 44 0 chr4 25337043 25337203 -176991144 - MIR SINE MIR -18 244 78 416 244 42 25 chr4 25337972 25338091 -176990256 + MIR SINE MIR 91 211 -51 448 346 139 13 chr4 25338909 25339282 -176989065 + L2 LINE L2 2557 2976 -338 221 245 0 0 chr4 25339406 25339455 -176988892 + (TTCA)n Simple_repeat Simple_repeat 3 51 0 207 314 116 41 chr4 25339462 25339583 -176988764 + L2 LINE L2 3137 3266 -6 * 279 302 146 14 chr4 25339578 25339790 -176988557 - MIR SINE MIR 0 262 23 285 287 149 33 chr4 25341495 25341676 -176986671 - MIR SINE MIR -6 256 55 192 163 0 0 chr4 25342776 25342819 -176985528 + (CA)n Simple_repeat Simple_repeat 2 44 0 2948 175 50 2 chr4 25343269 25343869 -176984478 + L1MB1 LINE L1 5536 6164 -4 214 265 0 0 chr4 25344139 25344188 -176984159 - MIR3 SINE MIR -26 182 134 361 295 58 33 chr4 25344356 25344561 -176983786 + MIR SINE MIR 4 212 -50 2425 122 3 0 chr4 25345598 25345966 -176982381 - L1PB1 LINE L1 -1 6150 5782 509 163 0 30 chr4 25345966 25346101 -176982246 + (TA)n Simple_repeat Simple_repeat 2 132 0 3634 85 23 8 chr4 25346105 25346636 -176981711 - L1PB1 LINE L1 -359 5792 5254 690 312 17 13 chr4 25346694 25346925 -176981422 + MIR SINE MIR 14 245 -17 186 222 0 0 chr4 25346896 25346932 -176981415 + L2 LINE L2 3262 3297 -16 * 333 204 169 28 chr4 25346987 25347129 -176981218 - MER103 DNA DNA -2 164 3 291 54 0 0 chr4 25347821 25347858 -176980489 + (TA)n Simple_repeat Simple_repeat 1 37 0 311 364 38 23 chr4 25348682 25348814 -176979533 + L2 LINE L2 3139 3272 0 202 317 0 0 chr4 25349138 25349198 -176979149 + L2 LINE L2 3242 3301 -12 42405 36 22 1 chr4 25349199 25355227 -176973120 - L1PA3 LINE L1 0 6155 1 536 151 12 0 chr4 25355321 25355407 -176972940 + MER20 DNA MER1_type 1 87 -132 3244 223 39 18 chr4 25355979 25356831 -176971516 - L1MA9 LINE L1 -30 6282 5413 229 371 14 14 chr4 25358011 25358151 -176970196 + L2 LINE L2 2602 2741 -573 700 207 20 7 chr4 25358328 25358478 -176969869 + MER96B DNA MER1_type? 1 152 -265 21 0 0 0 chr4 25358480 25358501 -176969846 + AT_rich Low_complexity Low_complexity 1 21 0 1096 216 172 35 chr4 25358802 25359131 -176969216 + MLT1E1 LTR MaLR 1 284 -370 261 0 0 0 chr4 25359131 25359160 -176969187 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1096 216 172 35 chr4 25359160 25359349 -176968998 + MLT1E1 LTR MaLR 284 654 0 253 355 78 44 chr4 25359351 25359672 -176968675 + L2 LINE L2 2610 2941 -373 21 36 0 0 chr4 25359983 25360011 -176968336 + AT_rich Low_complexity Low_complexity 1 28 0 1568 150 35 4 chr4 25360336 25360596 -176967751 - Tigger3(Golem) DNA MER2_type -2760 269 2 414 0 0 0 chr4 25360600 25360646 -176967701 + (CA)n Simple_repeat Simple_repeat 2 47 0 1227 267 84 5 chr4 25360646 25361028 -176967319 - MLT2B1 LTR ERVL -100 420 9 643 298 97 70 chr4 25361543 25362157 -176966190 + HAL1b LINE L1 71 584 -833 273 282 130 27 chr4 25362161 25362462 -176965885 + HAL1b LINE L1 635 966 -451 28 79 0 0 chr4 25363009 25363072 -176965275 + AT_rich Low_complexity Low_complexity 1 63 0 341 305 75 10 chr4 25363316 25363624 -176964723 - L1ME4a LINE L1 -178 5943 5616 658 243 24 44 chr4 25363927 25364133 -176964214 + Charlie2 DNA MER1_type 105 306 -2556 2855 232 64 8 chr4 25364149 25365101 -176963246 + Charlie2 DNA MER1_type 1857 2861 -1 2561 55 0 3 chr4 25365405 25365717 -176962630 - AluY SINE Alu 0 311 1 190 346 64 0 chr4 25366639 25366717 -176961630 - L2 LINE L2 -46 3226 3144 1921 163 0 0 chr4 25366980 25367269 -176961078 + AluSx SINE Alu 1 289 -23 1011 213 92 0 chr4 25367418 25367625 -176960722 + AluJb SINE Alu 72 297 -15 1106 311 53 40 chr4 25367747 25368330 -176960017 + L2 LINE L2 1997 2587 -727 1382 181 56 98 chr4 25368364 25368774 -176959573 + MSTD LTR MaLR 4 396 0 2428 215 13 65 chr4 25368774 25369462 -176958885 + MSTD-int LTR MaLR 2 653 -1082 1281 209 73 12 chr4 25369462 25369792 -176958555 - MER4D LTR ERV1 0 903 554 1182 201 67 4 chr4 25369822 25370090 -176958257 - MER49 LTR ERV1 -638 285 1 3165 233 121 45 chr4 25370090 25371095 -176957252 + MSTD-int LTR MaLR 650 1731 -4 373 220 10 20 chr4 25371100 25371200 -176957147 + MSTD LTR MaLR 2 100 -296 * 889 169 17 34 chr4 25371199 25371302 -176957045 + MSTD LTR MaLR 210 310 -86 2363 169 26 9 chr4 25371302 25371721 -176956626 + MSTB LTR MaLR 1 426 0 889 169 17 34 chr4 25371721 25371794 -176956553 + MSTD LTR MaLR 310 383 -13 582 341 84 39 chr4 25371807 25372463 -176955884 + L2 LINE L2 2633 3313 0 293 326 11 0 chr4 25372903 25372992 -176955355 + MIR SINE MIR 54 143 -65 485 300 131 75 chr4 25373857 25374337 -176954010 - L2 LINE L2 0 3313 2807 2823 123 37 0 chr4 25374399 25374830 -176953517 - MLT2A2 LTR ERVL 0 453 7 303 317 10 10 chr4 25375003 25375107 -176953240 - L1MEc LINE L1 -6231 165 62 2333 60 0 0 chr4 25375530 25375857 -176952490 - AluY SINE Alu 0 327 1 1705 194 64 6 chr4 25376373 25376718 -176951629 - MLT1A1 LTR MaLR 0 365 1 764 264 117 18 chr4 25376795 25377347 -176951000 + L1ME4a LINE L1 5326 5928 -193 356 256 15 68 chr4 25377357 25377490 -176950857 + L1MDa LINE L1 2437 2562 -3978 1703 217 32 78 chr4 25377705 25378318 -176950029 + MER63C DNA MER1_type 11 661 -400 739 173 0 8 chr4 25378318 25378445 -176949902 - FLAM_C SINE Alu -7 126 1 1703 217 32 78 chr4 25378445 25378705 -176949642 + MER63C DNA MER1_type 661 931 0 333 261 59 14 chr4 25378831 25378908 -176949439 - L1MEc LINE L1 -919 1868 1796 1608 253 56 16 chr4 25378908 25379394 -176948953 + MLT1D LTR MaLR 1 505 0 333 261 59 14 chr4 25379394 25379533 -176948814 - L1MEc LINE L1 -991 1796 1723 24 96 0 0 chr4 25379596 25379669 -176948678 + AT_rich Low_complexity Low_complexity 1 73 0 373 263 89 38 chr4 25379685 25379898 -176948449 - L1MEc LINE L1 -5021 1405 1182 230 322 7 0 chr4 25379907 25380056 -176948291 - L1MEc LINE L1 -5085 1344 1195 290 254 24 79 chr4 25380566 25380692 -176947655 - L1MEc LINE L1 -5948 468 350 37 93 0 0 chr4 25381379 25381486 -176946861 + AT_rich Low_complexity Low_complexity 1 107 0 244 261 42 59 chr4 25381911 25382030 -176946317 - L3b LINE CR1 -351 1232 1116 892 276 13 63 chr4 25383099 25383479 -176944868 - MLT1K LTR MaLR -18 570 210 401 339 49 22 chr4 25383930 25384113 -176944234 - MIR SINE MIR -40 222 35 383 359 61 9 chr4 25384355 25384586 -176943761 + MIR SINE MIR 9 251 -11 1437 203 32 41 chr4 25384596 25384911 -176943436 - AluJo SINE Alu 0 312 1 222 196 0 36 chr4 25384916 25384972 -176943375 + (TTA)n Simple_repeat Simple_repeat 1 54 0 198 290 89 61 chr4 25385149 25385302 -176943045 + MIR SINE MIR 6 161 -70 2539 138 29 12 chr4 25385527 25385946 -176942401 + MSTB LTR MaLR 1 426 0 1259 177 35 0 chr4 25386066 25386292 -176942055 - Charlie3 DNA MER1_type -2476 234 1 2090 62 0 141 chr4 25386348 25386702 -176941645 + AluY SINE Alu 1 304 -7 2233 115 0 0 chr4 25387074 25387369 -176940978 + AluSg1 SINE Alu 1 295 -14 316 266 0 57 chr4 25387487 25387611 -176940736 + L2 LINE L2 3197 3313 0 1021 279 63 34 chr4 25387717 25388102 -176940245 - L2 LINE L2 -10 3303 2886 1967 132 0 0 chr4 25388102 25388382 -176939965 + AluSx SINE Alu 31 310 -2 1021 279 63 34 chr4 25388382 25388513 -176939834 - L2 LINE L2 -427 2886 2760 1990 156 0 6 chr4 25388638 25388952 -176939395 + AluJb SINE Alu 1 312 0 405 155 29 29 chr4 25389061 25389164 -176939183 - MER58 DNA MER1_type 0 2420 2318 232 200 0 0 chr4 25389188 25389238 -176939109 - L1MB4 LINE L1 -18 6162 6113 390 241 35 0 chr4 25389260 25389347 -176939000 - MER58 DNA MER1_type -242 99 10 217 0 61 0 chr4 25389465 25389498 -176938849 + (TAAAAA)n Simple_repeat Simple_repeat 2 36 0 1625 175 40 55 chr4 25389624 25390025 -176938322 + MLT2C1 LTR ERVL 1 395 -2 1142 73 20 0 chr4 25391317 25391468 -176936879 - AluY SINE Alu -9 302 149 3591 52 0 2 chr4 25391470 25391917 -176936430 + LTR7 LTR ERV1 3 448 -2 16349 88 29 21 chr4 25391919 25394998 -176933349 + HERVH LTR ERV1 1 2995 -4718 938 113 7 0 chr4 25394977 25395127 -176933220 + HERVH LTR ERV1 3140 3290 -4423 * 3254 111 0 6 chr4 25395117 25395622 -176932725 + HERVH LTR ERV1 3492 3993 -3720 1477 113 18 4 chr4 25395624 25395853 -176932494 + HERVH LTR ERV1 4488 4719 -2994 1156 59 0 30 chr4 25395845 25396014 -176932333 + HERVH LTR ERV1 7550 7713 0 * 3601 51 0 2 chr4 25396014 25396463 -176931884 + LTR7 LTR ERV1 1 448 -2 1285 65 0 0 chr4 25396465 25396618 -176931729 - AluY SINE Alu -158 153 1 278 324 14 0 chr4 25396669 25396740 -176931607 - L2 LINE L2 -63 3209 3138 28 0 0 0 chr4 25396773 25396801 -176931546 + AT_rich Low_complexity Low_complexity 1 28 0 264 244 198 0 chr4 25397067 25397153 -176931194 - MIR SINE MIR 0 262 160 2394 100 0 0 chr4 25397598 25397909 -176930438 + AluY SINE Alu 1 311 0 416 289 74 20 chr4 25398040 25398189 -176930158 + MIR3 SINE MIR 38 194 -14 308 229 0 0 chr4 25398286 25398369 -176929978 + L1MA10 LINE L1 6241 6323 -11 1078 175 52 10 chr4 25398645 25398839 -176929508 - AluJo SINE Alu -26 286 85 222 239 0 28 chr4 25399200 25399271 -176929076 + A-rich Low_complexity Low_complexity 3 71 0 2149 86 4 4 chr4 25399316 25399622 -176928725 - AluSg SINE Alu 0 306 1 183 100 0 0 chr4 25399918 25399948 -176928399 + (A)n Simple_repeat Simple_repeat 1 30 0 269 234 48 97 chr4 25400731 25400796 -176927551 + MIR SINE MIR 68 126 -136 2511 62 0 3 chr4 25400796 25401103 -176927244 - AluY SINE Alu -4 307 2 269 234 48 97 chr4 25401103 25401161 -176927186 + MIR SINE MIR 126 185 -77 265 240 0 0 chr4 25402998 25403048 -176925299 + MIR3 SINE MIR 111 160 -48 184 263 0 0 chr4 25403267 25403305 -176925042 - MIR SINE MIR -115 147 110 189 100 60 0 chr4 25404027 25404077 -176924270 + (TA)n Simple_repeat Simple_repeat 2 54 0 251 54 27 0 chr4 25404762 25404799 -176923548 + (TTTTTG)n Simple_repeat Simple_repeat 4 41 0 2767 23 0 0 chr4 25404841 25405151 -176923196 + AluYb8 SINE Alu 1 310 -8 2740 57 6 0 chr4 25405639 25405988 -176922359 + L1PA7 LINE L1 5802 6152 -2 2264 117 0 10 chr4 25406217 25406526 -176921821 - AluSx SINE Alu -6 306 1 273 260 14 0 chr4 25406649 25406722 -176921625 + MER112 DNA MER1_type 1 74 -186 2377 306 73 32 chr4 25406869 25407899 -176920448 - HERV16 LTR ERVL -2056 2940 1850 2000 147 46 12 chr4 25407899 25408225 -176920122 - MER1B DNA MER1_type 0 337 1 2377 306 73 32 chr4 25408225 25408424 -176919923 - HERV16 LTR ERVL -3146 1850 1661 1317 331 33 7 chr4 25408457 25408997 -176919350 - HERV16 LTR ERVL -3462 1534 981 371 242 0 42 chr4 25409414 25409509 -176918838 + L2 LINE L2 3221 3311 -2 217 225 0 0 chr4 25409527 25409567 -176918780 + (TATG)n Simple_repeat Simple_repeat 3 42 0 23 68 0 0 chr4 25409582 25409626 -176918721 + AT_rich Low_complexity Low_complexity 1 44 0 422 238 14 77 chr4 25409797 25409940 -176918407 - AluJo SINE Alu -178 134 1 348 362 44 33 chr4 25410166 25410601 -176917746 - L1 LINE L1 -2340 3806 3374 189 0 0 0 chr4 25410924 25410945 -176917402 + (TTA)n Simple_repeat Simple_repeat 1 21 0 269 274 221 0 chr4 25412493 25412606 -176915741 + MIR3 SINE MIR 58 195 -13 310 337 40 19 chr4 25413699 25413874 -176914473 + MIR SINE MIR 13 186 -57 682 264 88 0 chr4 25413963 25414156 -176914191 - MIR SINE MIR -31 231 22 2488 128 8 11 chr4 25414404 25414780 -176913567 + THE1C LTR MaLR 1 375 0 9422 105 35 47 chr4 25414780 25416374 -176911973 + THE1C-int LTR MaLR 1 1574 -6 2226 128 35 14 chr4 25416380 25416747 -176911600 + THE1C LTR MaLR 1 375 0 979 182 125 34 chr4 25417579 25417876 -176910471 + MER33 DNA MER1_type 1 324 0 678 316 85 44 chr4 25418302 25418922 -176909425 - L2 LINE L2 -20 3293 2584 1027 178 14 29 chr4 25419026 25419234 -176909113 - AluJo SINE Alu -23 289 85 636 321 47 65 chr4 25419466 25419914 -176908433 - L1ME4a LINE L1 -261 5860 5421 235 209 105 0 chr4 25419929 25420015 -176908332 - L1P LINE L1 -724 5427 5333 226 294 109 40 chr4 25420699 25420884 -176907463 + MIR3 SINE MIR 3 206 -56 278 341 29 34 chr4 25421044 25421249 -176907098 - Charlie8 DNA MER1_type -2212 205 2 199 403 71 44 chr4 25422752 25423047 -176905300 - L2 LINE L2 -2 3270 2968 316 292 55 22 chr4 25423329 25423540 -176904807 + MLT1K LTR MaLR 74 278 -337 353 341 104 6 chr4 25424538 25424702 -176903645 + MIR SINE MIR 52 231 -31 581 319 108 0 chr4 25425268 25425500 -176902847 + MIR SINE MIR 4 260 -2 27 81 0 0 chr4 25425607 25425669 -176902678 + AT_rich Low_complexity Low_complexity 1 62 0 1628 199 23 0 chr4 25425720 25426021 -176902326 + AluJo SINE Alu 5 312 0 383 236 9 38 chr4 25426140 25426246 -176902101 - AluJo SINE Alu -117 185 83 216 0 0 0 chr4 25426340 25426364 -176901983 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 488 236 55 112 chr4 25426517 25426864 -176901483 - MLT1I LTR MaLR -2 407 81 567 307 90 8 chr4 25426911 25427155 -176901192 + L2 LINE L2 3050 3313 0 277 319 78 7 chr4 25427314 25427455 -176900892 - MIR SINE MIR -56 206 56 216 274 78 20 chr4 25427863 25427965 -176900382 + MIR SINE MIR 127 234 -28 251 244 12 12 chr4 25428354 25428440 -176899907 + LTR67 LTR ERVL 472 557 0 540 125 47 0 chr4 25428507 25428635 -176899712 + (TAGA)n Simple_repeat Simple_repeat 3 136 0 613 278 59 5 chr4 25428635 25428822 -176899525 - MIR SINE MIR 0 262 66 193 385 13 0 chr4 25429315 25429393 -176898954 - MIR SINE MIR -179 83 5 392 298 70 0 chr4 25431315 25431429 -176896918 + MIR SINE MIR 24 145 -63 205 288 96 0 chr4 25433871 25433944 -176894403 + MIR SINE MIR 180 259 -3 214 309 53 32 chr4 25434315 25434409 -176893938 + MIR SINE MIR 19 114 -94 202 351 26 0 chr4 25434443 25434520 -176893827 + MIR SINE MIR 168 246 -16 481 306 78 23 chr4 25435418 25435637 -176892710 - MIR SINE MIR -25 237 7 648 294 37 29 chr4 25435788 25436033 -176892314 + MIR SINE MIR 12 258 -4 199 0 65 0 chr4 25437768 25437799 -176890548 + (CAA)n Simple_repeat Simple_repeat 1 33 0 1226 114 6 0 chr4 25438004 25438180 -176890167 + L1PA8A LINE L1 5948 6124 -7 22 0 0 0 chr4 25438195 25438217 -176890130 + AT_rich Low_complexity Low_complexity 1 22 0 2096 121 40 0 chr4 25440410 25440707 -176887640 + AluSc SINE Alu 1 309 0 363 336 43 7 chr4 25441761 25441901 -176886446 + L2 LINE L2 3127 3271 -1 538 267 133 0 chr4 25442065 25442245 -176886102 + MIR SINE MIR 47 250 -12 259 301 83 0 chr4 25443162 25443295 -176885052 - MER103 DNA DNA -2 164 21 655 304 239 28 chr4 25444141 25444707 -176883640 + L2 LINE L2 2250 2934 -380 270 233 158 17 chr4 25444654 25444774 -176883573 + MIR SINE MIR 110 246 -16 * 412 374 21 11 chr4 25444831 25445018 -176883329 + L2 LINE L2 2887 3075 -238 645 342 17 0 chr4 25445092 25445326 -176883021 - MIR SINE MIR -6 256 19 852 282 95 38 chr4 25445442 25445789 -176882558 - L2 LINE L2 -454 2860 2494 322 343 48 36 chr4 25445801 25446049 -176882298 - L1ME LINE L1 -296 5825 5575 338 276 50 49 chr4 25446745 25446946 -176881401 - MIR SINE MIR -33 229 31 221 333 74 48 chr4 25447910 25448099 -176880248 + L2 LINE L2 2967 3160 -112 283 333 31 0 chr4 25448338 25448434 -176879913 + MIR SINE MIR 87 185 -77 1675 206 10 0 chr4 25448608 25448899 -176879448 - AluJo SINE Alu -18 294 1 411 326 14 0 chr4 25449184 25449325 -176879022 + MIR SINE MIR 116 258 -4 1771 188 11 0 chr4 25451257 25451608 -176876739 + L1MB7 LINE L1 5810 6164 -20 219 36 0 0 chr4 25452927 25452955 -176875392 + (TA)n Simple_repeat Simple_repeat 1 28 0 180 0 0 0 chr4 25452954 25452974 -176875373 + (CA)n Simple_repeat Simple_repeat 2 21 0 * 1701 187 90 45 chr4 25454400 25454843 -176873504 + MLT1C LTR MaLR 1 463 -4 271 340 103 47 chr4 25454965 25455412 -176872935 + ERVL LTR ERVL 4893 5364 -400 422 356 11 21 chr4 25455640 25455828 -176872519 + LTR33 LTR ERVL 1 186 -335 204 232 18 18 chr4 25456542 25456598 -176871749 + CT-rich Low_complexity Low_complexity 3 58 0 2023 157 0 0 chr4 25457051 25457356 -176870991 + AluSx SINE Alu 1 305 -7 2833 235 47 34 chr4 25458261 25459171 -176869176 - L1ME1 LINE L1 -7 6159 5239 324 237 0 41 chr4 25459406 25459503 -176868844 - L1MC4 LINE L1 -1337 6705 6613 * 328 284 23 0 chr4 25459416 25459504 -176868843 + L1MC4 LINE L1 6616 6705 -1337 471 314 138 53 chr4 25459897 25460715 -176867632 + L2 LINE L2 1345 2232 -1082 202 255 0 0 chr4 25460977 25461028 -176867319 - L2 LINE L2 0 3313 3263 366 325 20 60 chr4 25461281 25461533 -176866814 + L2 LINE L2 2519 2760 -554 259 336 44 35 chr4 25461990 25462103 -176866244 + L2 LINE L2 3159 3272 0 485 410 102 17 chr4 25462193 25462595 -176865752 - L2 LINE L2 -10 3262 2827 225 283 151 9 chr4 25462643 25462749 -176865598 - L2 LINE L2 -604 2710 2590 189 0 0 0 chr4 25463388 25463409 -176864938 + (A)n Simple_repeat Simple_repeat 1 21 0 506 355 53 48 chr4 25463843 25464299 -176864048 + L2 LINE L2 2500 2957 -357 370 275 25 0 chr4 25464431 25464511 -176863836 + L2 LINE L2 3141 3222 -50 252 59 0 0 chr4 25464553 25464587 -176863760 + (TGGA)n Simple_repeat Simple_repeat 1 34 0 2396 133 8 0 chr4 25464607 25464968 -176863379 - THE1B LTR MaLR 0 364 1 3708 97 19 2 chr4 25464968 25465494 -176862853 - THE1B-int LTR MaLR 0 1580 1046 11525 96 8 6 chr4 25465497 25467456 -176860891 + HERVL-A2 LTR ERVL 3742 5757 -7 1942 169 37 33 chr4 25467456 25468001 -176860346 + MLT2A2 LTR ERVL 1 552 -2 347 230 32 79 chr4 25468059 25468185 -176860162 + MIR SINE MIR 123 242 -20 22 0 0 0 chr4 25468252 25468274 -176860073 + AT_rich Low_complexity Low_complexity 1 22 0 2404 77 0 6 chr4 25468806 25469117 -176859230 - AluY SINE Alu -2 309 1 2309 100 0 16 chr4 25470123 25470433 -176857914 - AluSx SINE Alu -7 305 1 328 233 58 39 chr4 25471021 25471124 -176857223 + MLT1L LTR MaLR 501 605 -10 386 248 46 46 chr4 25472420 25472573 -176855774 - L2 LINE L2 0 3313 3161 2398 90 3 0 chr4 25472985 25473296 -176855051 - AluSp SINE Alu -1 312 1 230 0 33 0 chr4 25473386 25473416 -176854931 + (TCCA)n Simple_repeat Simple_repeat 3 33 0 27 49 0 0 chr4 25474654 25474695 -176853652 + AT_rich Low_complexity Low_complexity 1 41 0 263 333 86 43 chr4 25474701 25474887 -176853460 - MIR SINE MIR -12 250 57 193 258 268 10 chr4 25475084 25475181 -176853166 + L2 LINE L2 3136 3257 -15 311 208 0 10 chr4 25476963 25477059 -176851288 + CT-rich Low_complexity Low_complexity 2 96 0 530 209 38 0 chr4 25477509 25477614 -176850733 - MIR SINE MIR -105 157 49 1489 166 8 4 chr4 25478237 25478472 -176849875 + MER46A DNA MER2_type 1 236 0 271 293 27 0 chr4 25478491 25478566 -176849781 + L2 LINE L2 3181 3257 -15 412 350 93 22 chr4 25479159 25479385 -176848962 + MIR SINE MIR 21 262 0 248 196 18 0 chr4 25481035 25481091 -176847256 + (TTCA)n Simple_repeat Simple_repeat 1 57 0 199 324 67 9 chr4 25481323 25481428 -176846919 - L2 LINE L2 -12 3260 3150 465 333 91 9 chr4 25481505 25481724 -176846623 - MIR SINE MIR -12 250 14 238 380 63 0 chr4 25481749 25481891 -176846456 - L2 LINE L2 -284 2988 2838 359 330 100 55 chr4 25482093 25482605 -176845742 - L2 LINE L2 -753 2561 2027 388 329 133 7 chr4 25482628 25482771 -176845576 - MIR3 SINE MIR -12 196 36 1461 220 3 10 chr4 25482873 25483178 -176845169 - AluJo SINE Alu -9 303 1 201 253 53 32 chr4 25483325 25483420 -176844927 - MIR SINE MIR -89 173 77 822 114 0 0 chr4 25483644 25483758 -176844589 - AluSg/x SINE Alu -8 302 189 2033 38 0 61 chr4 25483758 25484047 -176844300 + AluY SINE Alu 37 309 0 250 252 194 15 chr4 25485133 25485280 -176843067 + MIR SINE MIR 20 187 -62 339 274 6 97 chr4 25485395 25485577 -176842770 + MER5A DNA MER1_type 6 176 -5 543 217 89 45 chr4 25486018 25486175 -176842172 - MIR SINE MIR -51 211 48 643 234 0 0 chr4 25486311 25486439 -176841908 - FLAM_A SINE Alu -5 128 1 231 36 0 0 chr4 25486488 25486516 -176841831 + (T)n Simple_repeat Simple_repeat 1 28 0 424 313 61 0 chr4 25486599 25486730 -176841617 - L3 LINE CR1 -4 1573 1435 311 221 47 35 chr4 25487419 25487505 -176840842 + L2 LINE L2 3186 3272 0 1376 249 63 40 chr4 25488202 25488439 -176839908 - L2 LINE L2 0 3313 3083 2257 87 14 0 chr4 25488439 25488725 -176839622 - AluSc SINE Alu -19 290 1 1376 249 63 40 chr4 25488725 25488961 -176839386 - L2 LINE L2 -230 3083 2829 364 296 94 25 chr4 25488991 25489150 -176839197 + L3 LINE CR1 1407 1576 -1 1686 142 127 0 chr4 25490006 25490266 -176838081 - AluSx SINE Alu -8 294 2 5456 186 36 11 chr4 25490281 25491187 -176837160 - L1MC3 LINE L1 0 7785 6846 384 71 0 0 chr4 25491187 25491243 -176837104 + (TG)n Simple_repeat Simple_repeat 1 56 0 5456 186 36 11 chr4 25491243 25491425 -176836922 - L1MC3 LINE L1 -939 6846 6670 287 173 36 100 chr4 25491515 25491605 -176836742 + MIR SINE MIR 51 134 -74 15786 130 14 38 chr4 25491605 25491800 -176836547 - Tigger1 DNA MER2_type -1 2417 2219 1822 167 6 22 chr4 25491800 25492117 -176836230 + AluSx SINE Alu 1 312 0 15786 130 14 38 chr4 25492117 25494396 -176833951 - Tigger1 DNA MER2_type -199 2219 1 287 173 36 100 chr4 25494396 25494415 -176833932 + MIR SINE MIR 134 153 -55 40 0 0 0 chr4 25494634 25494674 -176833673 + AT_rich Low_complexity Low_complexity 1 40 0 23 0 0 0 chr4 25494728 25494751 -176833596 + AT_rich Low_complexity Low_complexity 1 23 0 209 216 0 0 chr4 25495272 25495309 -176833038 + (TATATG)n Simple_repeat Simple_repeat 6 42 0 2162 119 0 7 chr4 25496961 25497263 -176831084 + AluSq SINE Alu 1 300 -13 229 320 105 29 chr4 25497290 25497462 -176830885 - MIR SINE MIR -50 212 28 216 0 0 0 chr4 25497462 25497486 -176830861 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 3522 83 21 4 chr4 25497486 25497841 -176830506 - L1PB1 LINE L1 -6 6145 5779 468 0 0 0 chr4 25497841 25497893 -176830454 + (TG)n Simple_repeat Simple_repeat 2 53 0 3522 83 21 4 chr4 25497893 25498009 -176830338 - L1PB1 LINE L1 -372 5779 5666 217 373 0 13 chr4 25498011 25498086 -176830261 + L2 LINE L2 3160 3233 -39 300 283 46 101 chr4 25498250 25498469 -176829878 - MIR SINE MIR -36 226 20 224 256 182 58 chr4 25499074 25499316 -176829031 - L2 LINE L2 -17 3296 3025 356 206 167 10 chr4 25499543 25499645 -176828702 + L2 LINE L2 3191 3308 -5 444 295 66 53 chr4 25500238 25500346 -176828001 + MIR SINE MIR 5 110 -152 2261 106 3 0 chr4 25500346 25500648 -176827699 + AluSg SINE Alu 1 303 -7 444 295 66 53 chr4 25500648 25500783 -176827564 + MIR SINE MIR 110 251 -11 579 222 78 30 chr4 25500799 25500966 -176827381 - MER104 DNA MER2_type -2 178 4 198 419 41 12 chr4 25501087 25501259 -176827088 - L3b LINE CR1 -154 1429 1253 745 304 144 59 chr4 25501388 25502470 -176825877 - L2 LINE L2 -8 3305 2119 458 308 0 0 chr4 25502691 25502808 -176825539 - MIR SINE MIR -142 120 4 324 305 124 19 chr4 25503661 25503766 -176824581 + MIR SINE MIR 30 145 -63 552 214 18 18 chr4 25504011 25504123 -176824224 - MER81 DNA DNA -2 112 1 185 245 41 0 chr4 25504157 25504206 -176824141 + L2 LINE L2 3165 3215 -98 1563 169 88 0 chr4 25504242 25504514 -176823833 - AluJb SINE Alu -16 296 1 235 330 59 17 chr4 25504734 25504852 -176823495 - MIR3 SINE MIR -81 127 5 214 343 0 0 chr4 25505883 25505956 -176822391 + CT-rich Low_complexity Low_complexity 1 73 0 546 198 97 123 chr4 25508045 25508272 -176820075 + MIR SINE MIR 10 230 -32 1608 203 33 15 chr4 25508304 25508634 -176819713 + MLT1A2 LTR MaLR 1 336 -38 399 323 23 8 chr4 25509010 25509143 -176819204 + MIR SINE MIR 6 140 -122 185 262 155 24 chr4 25511289 25511373 -176816974 + L2 LINE L2 3201 3295 -18 1244 132 24 5 chr4 25511886 25512091 -176816256 - AluSg/x SINE Alu -5 307 99 679 300 86 4 chr4 25512821 25513078 -176815269 - L2 LINE L2 -12 3301 3024 392 256 44 19 chr4 25513684 25513844 -176814503 - MER103 DNA DNA -2 164 1 406 204 259 19 chr4 25514563 25514725 -176813622 + MIR SINE MIR 32 232 -30 306 0 0 0 chr4 25514742 25514776 -176813571 + (CA)n Simple_repeat Simple_repeat 2 35 0 227 343 15 0 chr4 25515367 25515434 -176812913 + L2 LINE L2 2986 3053 -219 197 396 101 0 chr4 25515703 25515852 -176812495 + L2 LINE L2 3109 3272 0 247 330 116 9 chr4 25516040 25516152 -176812195 + L2 LINE L2 3144 3267 -5 372 86 43 0 chr4 25516197 25516267 -176812080 + (TCTA)n Simple_repeat Simple_repeat 1 73 0 396 291 157 22 chr4 25516379 25516647 -176811700 + L2 LINE L2 3005 3308 -5 206 258 0 76 chr4 25516895 25516961 -176811386 + L2 LINE L2 2877 2937 -377 758 281 62 57 chr4 25517019 25517158 -176811189 + L2 LINE L2 2920 3057 -256 2048 141 0 3 chr4 25517158 25517464 -176810883 - AluSx SINE Alu -7 305 1 758 281 62 57 chr4 25517464 25517712 -176810635 + L2 LINE L2 3057 3309 -4 2071 63 4 4 chr4 25520465 25520717 -176807630 + AluY SINE Alu 44 295 -16 2420 129 17 50 chr4 25522438 25522722 -176805625 - MLT1B LTR MaLR 0 390 121 2340 101 0 0 chr4 25522722 25523019 -176805328 - AluSg SINE Alu -11 299 3 2420 129 17 50 chr4 25523019 25523137 -176805210 - MLT1B LTR MaLR -269 121 1 275 260 187 0 chr4 25523144 25523267 -176805080 - MIR SINE MIR -96 166 21 368 275 108 30 chr4 25527640 25527807 -176800540 + MIR SINE MIR 63 242 -20 342 331 203 19 chr4 25528652 25529012 -176799335 - L2 LINE L2 -1 3271 2846 243 276 0 0 chr4 25529125 25529183 -176799164 - MIR3 SINE MIR -54 154 97 319 264 7 107 chr4 25529285 25529425 -176798922 + MIR SINE MIR 96 221 -41 598 293 63 9 chr4 25529455 25529677 -176798670 + MIR SINE MIR 17 250 -12 197 105 0 26 chr4 25529685 25529698 -176798649 + (TTA)n Simple_repeat Simple_repeat 1 13 -24 5239 40 0 5 chr4 25529698 25530304 -176798043 - L1PA4 LINE L1 -5 6150 5548 197 105 0 26 chr4 25530304 25530328 -176798019 + (TTA)n Simple_repeat Simple_repeat 13 37 0 441 0 0 0 chr4 25531274 25531323 -176797024 + (CA)n Simple_repeat Simple_repeat 1 49 0 630 234 43 72 chr4 25531440 25531649 -176796698 - MIR SINE MIR -1 261 59 203 300 12 12 chr4 25532249 25532329 -176796018 + (TA)n Simple_repeat Simple_repeat 1 80 0 324 0 0 0 chr4 25533551 25533587 -176794760 + (TG)n Simple_repeat Simple_repeat 1 36 0 493 241 35 65 chr4 25533691 25533861 -176794486 + MIR SINE MIR 28 192 -70 230 252 84 76 chr4 25535942 25536073 -176792274 - MER102a DNA MER1_type -6 324 193 183 80 0 0 chr4 25536817 25536842 -176791505 + (CA)n Simple_repeat Simple_repeat 1 25 0 433 300 111 76 chr4 25536948 25537318 -176791029 + L2 LINE L2 2884 3266 -6 225 0 0 0 chr4 25537393 25537418 -176790929 + (TC)n Simple_repeat Simple_repeat 2 26 0 189 0 0 0 chr4 25537417 25537438 -176790909 + (TA)n Simple_repeat Simple_repeat 1 21 0 * 399 113 0 0 chr4 25537439 25537501 -176790846 + (CA)n Simple_repeat Simple_repeat 1 62 0 370 224 153 0 chr4 25538737 25538835 -176789512 - MIR SINE MIR -77 185 73 2214 151 31 14 chr4 25538913 25539271 -176789076 - MLT1A1 LTR MaLR 0 365 2 592 286 49 16 chr4 25539271 25539456 -176788891 + MIR SINE MIR 68 258 -4 217 279 215 38 chr4 25539624 25539782 -176788565 + MIR SINE MIR 27 212 -50 22 56 0 0 chr4 25540204 25540240 -176788107 + AT_rich Low_complexity Low_complexity 1 36 0 426 330 67 21 chr4 25542470 25542664 -176785683 - MIR SINE MIR -25 237 35 204 115 0 58 chr4 25542825 25542877 -176785470 + (TTTTTG)n Simple_repeat Simple_repeat 2 50 0 335 296 115 46 chr4 25543147 25543451 -176784896 + L2 LINE L2 2889 3213 -100 291 171 79 26 chr4 25543551 25543627 -176784720 + L2 LINE L2 3233 3312 -1 908 242 88 75 chr4 25545551 25545709 -176782638 - MLT1L LTR MaLR -5 610 456 2173 125 0 0 chr4 25545709 25546013 -176782334 - AluSx SINE Alu -8 304 1 908 242 88 75 chr4 25546013 25546309 -176782038 - MLT1L LTR MaLR -159 456 150 309 26 0 0 chr4 25546536 25546574 -176781773 + (TCCA)n Simple_repeat Simple_repeat 3 40 0 700 257 12 82 chr4 25547452 25547709 -176780638 + MER102b DNA MER1_type 103 341 0 433 335 30 26 chr4 25548890 25549135 -176779212 + MIR SINE MIR 4 245 -17 606 233 84 101 chr4 25550337 25550514 -176777833 - L2 LINE L2 0 3313 3141 378 0 0 0 chr4 25550514 25550556 -176777791 + (TG)n Simple_repeat Simple_repeat 2 43 0 606 233 84 101 chr4 25550556 25550674 -176777673 - L2 LINE L2 -172 3141 3023 469 0 33 0 chr4 25550797 25550858 -176777489 + (TG)n Simple_repeat Simple_repeat 1 63 0 508 280 43 33 chr4 25551133 25551344 -176777003 + MIR SINE MIR 42 254 -8 29 0 0 0 chr4 25551470 25551499 -176776848 + AT_rich Low_complexity Low_complexity 1 29 0 220 322 99 13 chr4 25551882 25552034 -176776313 + L2 LINE L2 1869 2033 -1281 209 327 38 44 chr4 25552046 25552205 -176776142 + L2 LINE L2 2684 2841 -473 1042 201 300 43 chr4 25552856 25553293 -176775054 - MLT1H LTR MaLR 0 549 1 390 250 23 55 chr4 25554211 25554339 -176774008 + MER5A DNA MER1_type 13 136 -53 571 251 69 17 chr4 25554801 25554976 -176773371 - MIR SINE MIR -12 250 67 189 263 70 18 chr4 25555351 25555408 -176772939 + L2 LINE L2 3213 3272 0 289 323 98 30 chr4 25556597 25556761 -176771586 + MIR SINE MIR 14 188 -74 287 340 48 0 chr4 25557942 25558045 -176770302 + L2 LINE L2 3164 3271 -1 753 184 0 0 chr4 25558241 25558382 -176769965 - L1MA4A LINE L1 -11 6292 6152 2509 117 104 15 chr4 25558413 25558806 -176769541 - MSTA LTR MaLR 0 428 1 281 122 14 149 chr4 25559688 25559733 -176768614 - MER5A DNA MER1_type -93 96 63 1868 33 0 5 chr4 25559733 25559945 -176768402 - L1PA5 LINE L1 -13 6141 5931 281 122 14 149 chr4 25559945 25559973 -176768374 - MER5A DNA MER1_type -126 63 33 198 0 0 0 chr4 25560545 25560567 -176767780 + (T)n Simple_repeat Simple_repeat 1 22 0 920 212 0 0 chr4 25562756 25562907 -176765440 - FRAM SINE Alu -15 151 1 1982 155 45 79 chr4 25563332 25563494 -176764853 - MLT1C LTR MaLR -4 463 297 2032 130 179 16 chr4 25563494 25563862 -176764485 - MSTA LTR MaLR 0 428 1 1173 241 77 31 chr4 25563866 25564215 -176764132 + MLT1A1 LTR MaLR 1 365 0 1982 155 45 79 chr4 25564215 25564431 -176763916 - MLT1C LTR MaLR -173 294 94 2236 104 3 23 chr4 25564431 25564739 -176763608 + AluSx SINE Alu 1 302 -10 1982 155 45 79 chr4 25564739 25564798 -176763549 - MLT1C LTR MaLR -373 94 35 335 315 94 47 chr4 25565719 25565954 -176762393 - MLT1I LTR MaLR -154 255 10 463 302 39 0 chr4 25565977 25566106 -176762241 - MIR SINE MIR -116 146 13 220 345 97 9 chr4 25566514 25566627 -176761720 + L3 LINE CR1 893 1015 -562 * 379 301 98 16 chr4 25566613 25566837 -176761510 + MIR SINE MIR 20 256 -6 621 336 114 33 chr4 25566881 25567277 -176761070 + L3 LINE CR1 1016 1443 -134 351 229 125 31 chr4 25567368 25567464 -176760883 + MER5B DNA MER1_type 3 107 -71 282 95 0 0 chr4 25567884 25567926 -176760421 + (TG)n Simple_repeat Simple_repeat 2 43 0 2544 48 7 7 chr4 25570045 25570374 -176757973 + AluY SINE Alu 1 329 0 441 257 29 0 chr4 25570853 25570958 -176757389 - MIR SINE MIR -74 188 81 407 335 157 0 chr4 25571183 25571380 -176756967 - MIR SINE MIR -13 249 22 210 171 0 0 chr4 25571421 25571462 -176756885 + CT-rich Low_complexity Low_complexity 2 42 0 1681 169 6 47 chr4 25571468 25571788 -176756559 - AluJo SINE Alu -5 307 1 221 303 92 0 chr4 25572175 25572251 -176756096 + MIR SINE MIR 69 151 -57 779 260 43 17 chr4 25572835 25573066 -176755281 + MIR SINE MIR 5 241 -21 237 293 137 72 chr4 25573289 25573552 -176754795 - L2 LINE L2 -176 3096 2817 423 250 169 22 chr4 25573846 25574030 -176754317 - MIR SINE MIR -21 241 31 251 294 203 0 chr4 25574360 25574469 -176753878 + MIR SINE MIR 33 164 -59 471 315 92 27 chr4 25575274 25575566 -176752781 - L3b LINE CR1 -156 1427 1117 729 261 5 5 chr4 25575787 25575975 -176752372 + MIR SINE MIR 70 257 -5 208 311 27 14 chr4 25576669 25576743 -176751604 + L2 LINE L2 3168 3242 -30 213 258 31 78 chr4 25577862 25577990 -176750357 - MIR SINE MIR -50 212 91 630 299 39 13 chr4 25579002 25579236 -176749111 + MIR SINE MIR 23 262 0 236 245 0 38 chr4 25579246 25579299 -176749048 + L1ME LINE L1 4052 4102 -2044 373 321 55 43 chr4 25579332 25579983 -176748364 + L1ME LINE L1 4175 4833 -1313 432 268 97 38 chr4 25580361 25580853 -176747494 + L1ME LINE L1 5270 5794 -327 3533 271 122 52 chr4 25580981 25582182 -176746165 + HAL1 LINE L1 53 1168 -1339 432 0 0 0 chr4 25582182 25582230 -176746117 + (CA)n Simple_repeat Simple_repeat 2 49 0 3533 271 122 52 chr4 25582230 25583121 -176745226 + HAL1 LINE L1 1168 2293 -214 549 258 90 6 chr4 25583519 25583697 -176744650 + MIR SINE MIR 48 240 -22 2812 88 14 8 chr4 25583974 25584336 -176744011 - THE1B LTR MaLR 0 364 1 351 165 24 24 chr4 25585313 25585398 -176742949 + L1MA9 LINE L1 6228 6312 0 231 180 164 0 chr4 25585485 25585546 -176742801 - MIR SINE MIR -72 190 120 269 232 53 32 chr4 25585550 25585645 -176742702 - MIR SINE MIR -99 163 67 498 232 15 69 chr4 25586015 25586197 -176742150 + MIR SINE MIR 5 174 -65 195 162 0 0 chr4 25586222 25586259 -176742088 + (CAT)n Simple_repeat Simple_repeat 1 37 0 2031 148 0 7 chr4 25586513 25586823 -176741524 + AluSc SINE Alu 1 308 -1 28 29 0 0 chr4 25587222 25587257 -176741090 + AT_rich Low_complexity Low_complexity 1 35 0 97 25 0 0 chr4 25587636 25587754 -176740593 + AT_rich Low_complexity Low_complexity 1 118 0 246 357 58 13 chr4 25587959 25588113 -176740234 - MIR3 SINE MIR -3 205 45 1670 215 18 3 chr4 25588853 25589183 -176739164 - MER58B DNA MER1_type -1 340 6 221 290 60 50 chr4 25589827 25589927 -176738420 - MIR3 SINE MIR -98 110 10 573 308 86 5 chr4 25590624 25590822 -176737525 + MIR SINE MIR 40 253 -9 320 303 13 0 chr4 25591384 25591460 -176736887 + L2 LINE L2 3182 3258 -14 292 330 135 42 chr4 25591488 25591776 -176736571 + L2 LINE L2 2913 3227 -45 228 111 0 0 chr4 25591826 25591862 -176736485 + (CA)n Simple_repeat Simple_repeat 1 36 0 21 36 0 0 chr4 25592617 25592645 -176735702 + AT_rich Low_complexity Low_complexity 1 28 0 257 74 0 56 chr4 25592983 25593037 -176735310 + (A)n Simple_repeat Simple_repeat 1 51 0 280 353 7 13 chr4 25594068 25594221 -176734126 + MIR SINE MIR 105 256 -6 362 230 43 76 chr4 25596255 25596426 -176731921 - MIR SINE MIR -47 215 49 232 286 62 54 chr4 25597207 25597319 -176731028 - L2 LINE L2 -42 3230 3118 205 352 79 48 chr4 25598678 25598905 -176729442 + MIR SINE MIR 7 240 -22 * 414 231 63 28 chr4 25598901 25599044 -176729303 + MIR SINE MIR 115 262 0 2023 94 8 0 chr4 25600925 25601190 -176727157 - AluSx SINE Alu -45 267 1 183 286 20 0 chr4 25602273 25602322 -176726025 - MIR SINE MIR -9 253 204 3909 170 10 16 chr4 25602400 25603107 -176725240 - L1MB3 LINE L1 -39 6144 5442 437 267 19 0 chr4 25603124 25603229 -176725118 - MIR SINE MIR -80 182 76 377 288 34 8 chr4 25603706 25603824 -176724523 + MIR SINE MIR 48 168 -94 705 298 30 25 chr4 25604704 25604939 -176723408 + MIR SINE MIR 1 236 -26 211 280 0 0 chr4 25604948 25604998 -176723349 + (CTA)n Simple_repeat Simple_repeat 1 50 0 659 241 108 22 chr4 25606017 25606249 -176722098 - MIR SINE MIR 0 262 11 2481 67 0 25 chr4 25606684 25607000 -176721347 + AluY SINE Alu 1 308 -3 2286 113 0 0 chr4 25607200 25607500 -176720847 - AluSx SINE Alu -12 300 1 218 191 0 0 chr4 25607579 25607621 -176720726 + (TTCA)n Simple_repeat Simple_repeat 3 44 0 632 301 22 26 chr4 25608233 25608462 -176719885 + MIR SINE MIR 35 262 0 2411 88 0 3 chr4 25608642 25608949 -176719398 - AluY SINE Alu -5 306 1 2325 93 0 7 chr4 25609359 25609660 -176718687 + AluSg SINE Alu 1 299 -11 228 204 0 82 chr4 25610529 25610627 -176717720 - L1MC4 LINE L1 -1339 6703 6614 210 118 0 0 chr4 25610628 25610662 -176717685 + (TA)n Simple_repeat Simple_repeat 1 34 0 222 91 0 0 chr4 25610693 25610726 -176717621 + (CA)n Simple_repeat Simple_repeat 2 34 0 219 279 33 0 chr4 25610898 25610959 -176717388 - MIR SINE MIR -111 151 89 897 186 37 28 chr4 25612205 25612420 -176715927 + MIR SINE MIR 15 231 -31 468 257 120 6 chr4 25612441 25612624 -176715723 - L2 LINE L2 -2 3311 3108 1074 289 102 15 chr4 25612817 25613218 -176715129 - MLT1J2 LTR MaLR -2 448 13 1896 201 77 29 chr4 25614042 25614485 -176713862 + MLT1C LTR MaLR 1 464 -3 32 43 0 0 chr4 25614575 25614621 -176713726 + AT_rich Low_complexity Low_complexity 1 46 0 1679 272 63 2 chr4 25618276 25618765 -176709582 - LTR33 LTR ERVL -2 519 1 240 167 0 0 chr4 25619961 25620009 -176708338 + (ATG)n Simple_repeat Simple_repeat 1 48 0 210 274 16 16 chr4 25620135 25620197 -176708150 - MIR SINE MIR -109 153 92 264 309 25 12 chr4 25620319 25620400 -176707947 + MIR3 SINE MIR 111 192 -16 601 321 5 16 chr4 25621703 25621890 -176706457 + MER91A DNA MER1_type 9 193 -3 326 346 52 15 chr4 25621912 25622048 -176706299 - L2 LINE L2 -10 3262 3122 390 257 87 60 chr4 25622560 25622743 -176705604 - MIR SINE MIR -67 195 8 184 344 0 0 chr4 25622913 25622974 -176705373 - MIR SINE MIR -2 260 200 1760 274 28 15 chr4 25623062 25623667 -176704680 - L1ME3 LINE L1 -111 6051 5439 980 190 58 0 chr4 25623695 25623869 -176704478 - MIR SINE MIR -73 189 6 22 0 0 0 chr4 25624104 25624126 -176704221 + AT_rich Low_complexity Low_complexity 1 22 0 2049 138 0 19 chr4 25624279 25624597 -176703750 - AluSx SINE Alu 0 312 1 26 0 0 0 chr4 25624639 25624665 -176703682 + AT_rich Low_complexity Low_complexity 1 26 0 969 238 60 43 chr4 25625178 25625598 -176702749 - L1MC5 LINE L1 -80 7881 7455 210 91 0 0 chr4 25626419 25626452 -176701895 + (TG)n Simple_repeat Simple_repeat 2 34 0 792 277 42 47 chr4 25626525 25626762 -176701585 - MIR SINE MIR -27 235 5 215 271 119 25 chr4 25626821 25626939 -176701408 + MIR SINE MIR 70 198 -64 330 278 99 60 chr4 25626984 25627135 -176701212 - L2 LINE L2 0 3272 3116 222 253 0 67 chr4 25627173 25627248 -176701099 + L2 LINE L2 3202 3271 -1 321 296 56 97 chr4 25627448 25627715 -176700632 + MIR SINE MIR 1 256 -6 197 62 0 31 chr4 25627716 25627748 -176700599 + (TTA)n Simple_repeat Simple_repeat 3 33 0 383 285 93 13 chr4 25627857 25628008 -176700339 + MIR3 SINE MIR 36 198 -10 472 215 50 0 chr4 25628153 25628274 -176700073 + MER20 DNA MER1_type 84 210 -9 272 298 19 48 chr4 25628657 25628761 -176699586 - L2 LINE L2 0 3272 3172 219 279 186 12 chr4 25628899 25628985 -176699362 + L2 LINE L2 3172 3272 0 290 322 81 13 chr4 25630240 25630389 -176697958 - MIR SINE MIR -56 206 48 632 213 170 32 chr4 25630832 25631085 -176697262 - MER5C DNA MER1_type -3 321 34 351 293 75 0 chr4 25631141 25631274 -176697073 - MIR SINE MIR -110 152 10 716 304 13 22 chr4 25631740 25631967 -176696380 + MIR SINE MIR 28 252 -10 191 375 8 33 chr4 25632174 25632294 -176696053 - MIR SINE MIR -112 150 34 658 286 80 9 chr4 25632338 25632562 -176695785 - MIR SINE MIR 0 262 23 375 73 0 0 chr4 25632603 25632658 -176695689 + (CA)n Simple_repeat Simple_repeat 1 55 0 300 330 54 9 chr4 25632691 25632803 -176695544 + MIR3 SINE MIR 89 205 -3 208 326 95 0 chr4 25633349 25633444 -176694903 - MIR3 SINE MIR -17 191 88 536 309 43 0 chr4 25633614 25633844 -176694503 - Charlie8 DNA MER1_type -2131 286 47 358 313 188 14 chr4 25635462 25635670 -176692677 + MIR SINE MIR 12 255 -7 367 232 10 10 chr4 25636962 25637061 -176691286 - MLT1I LTR MaLR -7 402 304 249 298 37 78 chr4 25637300 25637518 -176690829 - L2 LINE L2 -26 3287 3079 647 238 41 17 chr4 25638058 25638230 -176690117 - MIR SINE MIR -24 238 63 325 285 194 7 chr4 25640431 25640575 -176687772 + MIR SINE MIR 89 259 -3 343 269 167 21 chr4 25640598 25640832 -176687515 + L1ME4a LINE L1 5636 5903 -218 312 298 159 31 chr4 25642597 25642855 -176685492 + MER102b DNA MER1_type 51 341 0 187 254 0 73 chr4 25643352 25643407 -176684940 + L2 LINE L2 3262 3312 -1 266 260 0 26 chr4 25644616 25644693 -176683654 + (TATATG)n Simple_repeat Simple_repeat 2 76 0 226 218 0 18 chr4 25644696 25644751 -176683596 - MER116 DNA Mariner -23 57 4 2434 206 96 5 chr4 25644868 25645461 -176682886 + MLT1E1 LTR MaLR 8 654 0 25 0 0 0 chr4 25646624 25646649 -176681698 + AT_rich Low_complexity Low_complexity 1 25 0 234 353 47 0 chr4 25646676 25646761 -176681586 + L2 LINE L2 3157 3245 -27 203 250 0 0 chr4 25648445 25648493 -176679854 + (TG)n Simple_repeat Simple_repeat 1 48 0 446 261 134 13 chr4 25649255 25649412 -176678935 + L2 LINE L2 3138 3313 0 541 277 45 55 chr4 25649547 25649767 -176678580 - MIR SINE MIR -14 248 31 21 0 0 0 chr4 25650703 25650724 -176677623 + AT_rich Low_complexity Low_complexity 1 21 0 407 309 179 45 chr4 25652137 25652583 -176675764 + L2 LINE L2 2807 3312 -1 209 305 0 0 chr4 25652583 25652642 -176675705 + GA-rich Low_complexity Low_complexity 2 60 0 684 183 6 72 chr4 25652713 25652893 -176675454 - MER104 DNA Tc2 -3 177 10 2133 131 7 0 chr4 25653506 25653841 -176674506 + AluSx SINE Alu 1 337 0 230 296 86 0 chr4 25653856 25653937 -176674410 + MIR SINE MIR 38 125 -83 300 337 64 45 chr4 25654304 25654506 -176673841 - MIR3 SINE MIR 0 208 3 220 228 53 18 chr4 25655006 25655063 -176673284 - MIR SINE MIR -168 94 36 641 289 97 36 chr4 25655978 25656324 -176672023 + L2 LINE L2 2662 3021 -292 330 336 22 29 chr4 25656607 25656744 -176671603 + MIR SINE MIR 16 151 -57 1932 112 0 4 chr4 25657429 25657687 -176670660 + AluSc SINE Alu 1 257 -52 261 0 0 0 chr4 25657728 25657757 -176670590 + (TC)n Simple_repeat Simple_repeat 2 30 0 * 270 0 0 0 chr4 25657756 25657786 -176670561 + (TG)n Simple_repeat Simple_repeat 1 30 0 290 195 13 0 chr4 25659737 25659814 -176668533 + GA-rich Low_complexity Low_complexity 2 79 0 180 0 0 0 chr4 25660321 25660341 -176668006 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1869 133 41 3 chr4 25662063 25662357 -176665990 + AluSx SINE Alu 1 305 -7 564 253 48 16 chr4 25662772 25662958 -176665389 - MER117 DNA MER1_type -4 193 2 796 230 85 0 chr4 25662969 25663169 -176665178 + MER58A DNA MER1_type 3 219 -5 231 295 105 75 chr4 25664023 25664223 -176664124 - L2 LINE L2 -111 3161 2956 499 239 61 49 chr4 25666131 25666294 -176662053 + MIR SINE MIR 8 172 -90 235 274 16 0 chr4 25666587 25666649 -176661698 + MIR SINE MIR 190 252 -10 518 341 27 27 chr4 25667255 25667478 -176660869 + MIR SINE MIR 14 236 -26 216 177 0 48 chr4 25667484 25667608 -176660739 + (TAA)n Simple_repeat Simple_repeat 2 119 0 349 356 23 5 chr4 25668070 25668287 -176660060 + MIR SINE MIR 20 241 -21 333 164 57 0 chr4 25669725 25669884 -176658463 + (TA)n Simple_repeat Simple_repeat 2 169 0 219 241 194 74 chr4 25670164 25670272 -176658075 - L2 LINE L2 0 3313 3193 24 0 0 0 chr4 25670310 25670334 -176658013 + AT_rich Low_complexity Low_complexity 1 24 0 334 83 70 38 chr4 25670841 25670998 -176657349 + (TA)n Simple_repeat Simple_repeat 1 162 0 201 283 0 0 chr4 25671075 25671128 -176657219 + (TA)n Simple_repeat Simple_repeat 1 53 0 5232 61 12 1 chr4 25671390 25672064 -176656283 + L1PA7 LINE L1 5473 6153 -1 317 347 51 23 chr4 25672271 25672487 -176655860 - L2 LINE L2 -214 3058 2837 388 335 38 32 chr4 25673091 25673276 -176655071 + MIR SINE MIR 35 220 -42 423 320 17 29 chr4 25673771 25673943 -176654404 - MIR3 SINE MIR -1 207 38 21 0 0 0 chr4 25674366 25674387 -176653960 + AT_rich Low_complexity Low_complexity 1 21 0 477 285 92 14 chr4 25674643 25674850 -176653497 - L3b LINE CR1 -238 1345 1123 560 284 21 7 chr4 25674986 25675128 -176653219 + MIR SINE MIR 25 167 -62 215 154 0 19 chr4 25676120 25676172 -176652175 + CT-rich Low_complexity Low_complexity 2 52 0 199 326 58 0 chr4 25676617 25676703 -176651644 - MIR SINE MIR -48 214 124 1047 231 0 14 chr4 25676748 25676969 -176651378 - MER58A DNA MER1_type 0 224 7 478 332 47 37 chr4 25676986 25677200 -176651147 - MIR SINE MIR 0 262 47 852 288 118 19 chr4 25677229 25677646 -176650701 + MLT1J LTR MaLR 11 468 -43 239 330 42 17 chr4 25678625 25678743 -176649604 + MIR SINE MIR 92 212 -50 352 288 96 16 chr4 25678930 25679055 -176649292 + LTR67 LTR ERVL 71 205 -352 476 303 65 11 chr4 25679093 25679354 -176648993 + LTR67 LTR ERVL 277 551 -6 194 341 43 22 chr4 25679458 25679596 -176648751 - L2 LINE L2 -455 2859 2719 216 0 0 0 chr4 25679646 25679670 -176648677 + (T)n Simple_repeat Simple_repeat 1 24 0 22 0 0 0 chr4 25680597 25680619 -176647728 + AT_rich Low_complexity Low_complexity 1 22 0 887 134 0 43 chr4 25682151 25682315 -176646032 - L1PA10 LINE L1 0 6168 6012 575 170 11 16 chr4 25682723 25682913 -176645434 + CT-rich Low_complexity Low_complexity 1 189 0 1539 183 57 54 chr4 25682953 25683342 -176645005 - MLT1B LTR MaLR 0 390 1 414 269 13 168 chr4 25683877 25684115 -176644232 - MIR SINE MIR -54 208 8 2200 133 0 0 chr4 25684138 25684438 -176643909 + AluSx SINE Alu 1 300 -12 209 257 47 17 chr4 25684656 25684741 -176643606 - MIR3 SINE MIR -54 154 98 2105 73 0 73 chr4 25684902 25685216 -176643131 + AluY SINE Alu 1 291 -20 23 33 0 0 chr4 25685366 25685396 -176642951 + AT_rich Low_complexity Low_complexity 1 30 0 212 214 0 24 chr4 25685485 25685527 -176642820 + L2 LINE L2 3216 3256 -16 208 38 113 0 chr4 25685863 25685916 -176642431 + (TTTA)n Simple_repeat Simple_repeat 2 60 0 348 252 65 0 chr4 25687091 25687214 -176641133 + MER103 DNA DNA 3 133 -33 23 33 0 0 chr4 25688022 25688052 -176640295 + AT_rich Low_complexity Low_complexity 1 30 0 3273 85 2 11 chr4 25688144 25688592 -176639755 + MLT2A1 LTR ERVL 1 444 0 475 326 58 13 chr4 25690510 25690736 -176637611 + MIR SINE MIR 22 259 -3 260 311 0 86 chr4 25690787 25690912 -176637435 + MIR SINE MIR 39 154 -63 278 0 54 0 chr4 25691023 25691060 -176637287 + (TTTTG)n Simple_repeat Simple_repeat 1 39 0 2022 122 11 0 chr4 25691061 25691339 -176637008 - AluSq SINE Alu -32 281 1 407 250 167 21 chr4 25691670 25691814 -176636533 - MIR SINE MIR -12 250 86 217 339 100 66 chr4 25691935 25692224 -176636123 + L2 LINE L2 2909 3207 -65 228 271 17 0 chr4 25692225 25692284 -176636063 + GA-rich Low_complexity Low_complexity 2 61 0 290 283 66 33 chr4 25693232 25693384 -176634963 + MIR SINE MIR 31 187 -75 1055 188 5 24 chr4 25693500 25693713 -176634634 - MER3 DNA MER1_type 0 209 1 210 264 246 0 chr4 25694335 25694445 -176633902 - MIR SINE MIR -2 260 124 258 314 48 38 chr4 25694553 25694658 -176633689 - L2 LINE L2 0 3313 3208 461 302 131 37 chr4 25695113 25695570 -176632777 + L2 LINE L2 1996 2495 -819 585 228 139 19 chr4 25695659 25695817 -176632530 + MIR SINE MIR 20 196 -66 291 296 45 0 chr4 25697562 25697650 -176630697 + MIR3 SINE MIR 83 174 -34 899 161 9 85 chr4 25699544 25699755 -176628592 - MER20 DNA MER1_type -1 218 24 422 302 31 8 chr4 25702273 25702402 -176625945 + L2 LINE L2 3182 3313 0 187 261 22 0 chr4 25702445 25702491 -176625856 - MIR3 SINE MIR -54 154 108 310 336 167 15 chr4 25702538 25702862 -176625485 - L2 LINE L2 -5 3267 2895 489 279 104 22 chr4 25702896 25703079 -176625268 + MIR SINE MIR 3 200 -62 594 243 155 7 chr4 25703601 25703749 -176624598 + MER5A DNA MER1_type 17 186 -3 1293 229 76 0 chr4 25703760 25704075 -176624272 + MER58B DNA MER1_type 1 339 -2 438 315 89 38 chr4 25704076 25704311 -176624036 + MIR SINE MIR 16 262 0 22 0 0 0 chr4 25705214 25705236 -176623111 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr4 25706853 25706873 -176621474 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 551 206 33 46 chr4 25707196 25707371 -176620976 + MER69 DNA AcHobo 8 2526 0 243 323 48 38 chr4 25707508 25707694 -176620653 - LTR33 LTR ERVL -297 224 37 340 292 215 42 chr4 25708633 25708917 -176619430 + L2 LINE L2 2935 3267 -5 418 277 23 0 chr4 25711181 25711311 -176617036 + MER94 DNA DNA 2 134 0 304 243 142 47 chr4 25711430 25711578 -176616769 + MIR SINE MIR 89 250 -12 363 286 143 0 chr4 25711686 25711805 -176616542 + L2 LINE L2 3137 3272 0 789 305 4 61 chr4 25712422 25712553 -176615794 + MIR SINE MIR 14 124 -138 405 0 0 0 chr4 25712553 25712598 -176615749 + (TA)n Simple_repeat Simple_repeat 1 45 0 789 305 4 61 chr4 25712598 25712728 -176615619 + MIR SINE MIR 124 260 -2 291 54 0 0 chr4 25713102 25713139 -176615208 + (TG)n Simple_repeat Simple_repeat 2 38 0 23 78 0 0 chr4 25714616 25714667 -176613680 + AT_rich Low_complexity Low_complexity 1 51 0 21 0 0 0 chr4 25714697 25714718 -176613629 + AT_rich Low_complexity Low_complexity 1 21 0 225 108 0 0 chr4 25714802 25714839 -176613508 + (CAGAGA)n Simple_repeat Simple_repeat 5 41 0 628 248 127 0 chr4 25714842 25714999 -176613348 - MIR SINE MIR -26 236 60 2563 105 5 29 chr4 25715009 25715391 -176612956 - THE1C LTR MaLR -2 373 1 3063 174 20 2 chr4 25715676 25716274 -176612073 - L1MC3 LINE L1 0 7785 7177 276 329 0 0 chr4 25716275 25716351 -176611996 - MLT1F1 LTR MaLR -456 111 36 279 271 25 8 chr4 25716364 25716482 -176611865 - L1MC/D LINE L1 -2014 5794 5675 28 0 0 26 chr4 25718523 25718540 -176609807 + AT_rich Low_complexity Low_complexity 1 17 -21 1421 206 10 34 chr4 25718540 25718832 -176609515 + AluJo SINE Alu 3 287 -25 28 0 0 26 chr4 25718832 25718853 -176609494 + AT_rich Low_complexity Low_complexity 17 38 0 376 342 80 47 chr4 25719463 25719738 -176608609 + L2 LINE L2 2985 3268 -4 202 188 0 0 chr4 25720748 25720780 -176607567 + polypyrimidine Low_complexity Low_complexity 5 36 0 193 359 109 39 chr4 25721385 25721513 -176606834 + L2 LINE L2 3136 3272 0 413 18 54 0 chr4 25722346 25722402 -176605945 + (TTTTA)n Simple_repeat Simple_repeat 2 60 0 2023 119 14 0 chr4 25723013 25723306 -176605041 - AluSx SINE Alu -15 297 1 910 119 0 0 chr4 25723309 25723435 -176604912 - AluSp SINE Alu -181 132 7 669 265 132 9 chr4 25723509 25723728 -176604619 + MIR SINE MIR 16 261 -1 537 239 42 80 chr4 25724051 25724264 -176604083 + MIR SINE MIR 2 206 -56 273 300 57 0 chr4 25724311 25724381 -176603966 - MER91C DNA MER1_type -33 107 34 340 265 0 68 chr4 25725059 25725176 -176603171 + MIR SINE MIR 61 169 -93 21 0 0 0 chr4 25727274 25727295 -176601052 + AT_rich Low_complexity Low_complexity 1 21 0 286 301 122 16 chr4 25727420 25727543 -176600804 + MIR SINE MIR 20 155 -107 593 254 94 33 chr4 25727868 25728081 -176600266 - MIR SINE MIR -27 235 10 442 273 103 30 chr4 25728100 25728265 -176600082 - MIR SINE MIR -15 247 71 346 222 111 40 chr4 25729953 25730079 -176598268 + MIR SINE MIR 128 262 0 21 36 0 0 chr4 25730715 25730743 -176597604 + AT_rich Low_complexity Low_complexity 1 28 0 5062 88 4 41 chr4 25730743 25731524 -176596823 - L1PA10 LINE L1 0 6168 5417 214 304 43 0 chr4 25731525 25731594 -176596753 - L2 LINE L2 -4 3309 3238 336 338 76 43 chr4 25732122 25732332 -176596015 + MIR SINE MIR 46 262 0 1989 131 60 20 chr4 25732558 25732910 -176595437 + MER47A DNA MER2_type 1 366 0 469 278 36 92 chr4 25732958 25733264 -176595083 - L2 LINE L2 -52 3220 2932 300 290 174 63 chr4 25733466 25733880 -176594467 - L2 LINE L2 -823 2491 2032 2174 95 14 3 chr4 25735266 25735549 -176592798 - AluSc SINE Alu -23 286 1 206 214 0 0 chr4 25736304 25736346 -176592001 + CT-rich Low_complexity Low_complexity 3 44 0 191 238 128 94 chr4 25736357 25736488 -176591859 + L2 LINE L2 3143 3313 0 206 81 0 54 chr4 25736753 25736790 -176591557 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 240 35 0 0 chr4 25737907 25737936 -176590411 + (TGAA)n Simple_repeat Simple_repeat 2 30 0 263 322 6 12 chr4 25740428 25740569 -176587778 - MIR3 SINE MIR -6 202 62 212 242 81 61 chr4 25740669 25740768 -176587579 - L2 LINE L2 -18 3295 3195 1873 161 13 10 chr4 25741375 25741679 -176586668 + AluSx SINE Alu 1 305 -7 270 297 0 0 chr4 25741715 25741779 -176586568 + L2 LINE L2 3208 3271 -1 1749 65 5 0 chr4 25742272 25742489 -176585858 + AluY SINE Alu 1 218 -93 189 107 0 0 chr4 25742502 25742530 -176585817 + (A)n Simple_repeat Simple_repeat 1 28 0 312 335 32 6 chr4 25742692 25742850 -176585497 + MER117 DNA MER1_type 7 168 -29 548 242 38 97 chr4 25743166 25743559 -176584788 + L1ME4a LINE L1 5727 6096 -25 228 253 84 24 chr4 25743602 25743685 -176584662 - MIR SINE MIR -48 214 127 857 231 49 39 chr4 25743764 25743967 -176584380 - MIR SINE MIR -56 206 2 521 275 64 39 chr4 25744239 25744472 -176583875 - L2 LINE L2 -29 3284 3046 25 51 0 0 chr4 25744713 25744752 -176583595 + AT_rich Low_complexity Low_complexity 1 39 0 260 189 27 40 chr4 25745630 25745704 -176582643 + MIR SINE MIR 176 248 -14 22 0 0 0 chr4 25745715 25745737 -176582610 + AT_rich Low_complexity Low_complexity 1 22 0 264 290 14 0 chr4 25745743 25745812 -176582535 + L2 LINE L2 3203 3272 0 204 377 54 72 chr4 25745813 25746036 -176582311 + L2 LINE L2 3054 3272 0 282 333 128 0 chr4 25746171 25746273 -176582074 - L2 LINE L2 0 3272 3158 185 243 71 0 chr4 25746468 25746538 -176581809 + MIR SINE MIR 180 254 -8 245 65 0 0 chr4 25746542 25746573 -176581774 - MLT2C2 LTR ERVL 0 397 367 294 29 0 0 chr4 25746576 25746611 -176581736 + (TC)n Simple_repeat Simple_repeat 2 36 0 * 319 21 42 0 chr4 25746610 25746658 -176581689 + (TA)n Simple_repeat Simple_repeat 1 50 0 2364 60 0 54 chr4 25746778 25747094 -176581253 + AluY SINE Alu 1 299 -12 1686 211 57 0 chr4 25747094 25747464 -176580883 - MLT2C2 LTR ERVL -71 393 3 343 287 65 67 chr4 25747493 25747658 -176580689 - MIR SINE MIR -63 145 19 794 138 7 0 chr4 25747971 25748109 -176580238 + L1MB1 LINE L1 6030 6168 0 628 292 129 2 chr4 25748931 25749135 -176579212 + MIR SINE MIR 11 235 -27 395 67 97 0 chr4 25749139 25749145 -176579202 + (TA)n Simple_repeat Simple_repeat 2 6 -142 2026 120 7 0 chr4 25749145 25749428 -176578919 + AluSg SINE Alu 1 285 -25 395 67 97 0 chr4 25749428 25749555 -176578792 + (TA)n Simple_repeat Simple_repeat 6 148 0 22 0 0 0 chr4 25749558 25749580 -176578767 + AT_rich Low_complexity Low_complexity 1 22 0 589 97 67 0 chr4 25749596 25749761 -176578586 + (TA)n Simple_repeat Simple_repeat 2 177 0 226 320 270 0 chr4 25750034 25750212 -176578135 - MIR SINE MIR -3 259 34 22 0 0 0 chr4 25751592 25751614 -176576733 + AT_rich Low_complexity Low_complexity 1 22 0 286 319 72 14 chr4 25752209 25752347 -176576000 - MIR SINE MIR -70 192 47 2004 134 23 0 chr4 25753228 25753527 -176574820 - AluSx SINE Alu -6 306 1 696 350 12 4 chr4 25754005 25754262 -176574085 + MIR SINE MIR 4 262 0 263 281 73 0 chr4 25757417 25757499 -176570848 + MER91C DNA MER1_type 22 109 -31 598 245 94 10 chr4 25757612 25757908 -176570439 - MER33 DNA MER1_type -2 361 1 2200 113 0 46 chr4 25758284 25758467 -176569880 - AluSx SINE Alu 0 312 149 2525 56 0 10 chr4 25758467 25758770 -176569577 - AluY SINE Alu -11 300 1 2200 113 0 46 chr4 25758770 25758913 -176569434 - AluSx SINE Alu -163 149 1 462 304 130 24 chr4 25759314 25759521 -176568826 - MIR SINE MIR -15 247 19 253 298 24 12 chr4 25759648 25759732 -176568615 - MIR3 SINE MIR -41 167 83 819 264 27 46 chr4 25759907 25760275 -176568072 - L1ME3A LINE L1 0 6170 5810 2228 97 0 32 chr4 25760708 25761016 -176567331 + AluSg SINE Alu 1 298 -12 401 365 6 0 chr4 25762326 25762485 -176565862 - MIR3 SINE MIR -10 198 39 767 264 95 49 chr4 25763552 25763866 -176564481 - L1ME4a LINE L1 0 6121 5768 351 0 0 0 chr4 25763866 25763905 -176564442 + (CA)n Simple_repeat Simple_repeat 2 40 0 767 264 95 49 chr4 25763905 25764161 -176564186 - L1ME4a LINE L1 -353 5768 5525 207 100 0 0 chr4 25764499 25764529 -176563818 + (A)n Simple_repeat Simple_repeat 1 30 0 24 0 0 0 chr4 25765265 25765289 -176563058 + AT_rich Low_complexity Low_complexity 1 24 0 184 331 47 47 chr4 25765827 25765954 -176562393 + MIR SINE MIR 106 232 -30 21 57 0 0 chr4 25766338 25766373 -176561974 + AT_rich Low_complexity Low_complexity 1 35 0 237 178 0 0 chr4 25769567 25769612 -176558735 + T-rich Low_complexity Low_complexity 1 45 0 221 246 0 0 chr4 25772908 25772973 -176555374 + T-rich Low_complexity Low_complexity 1 65 0 222 205 0 0 chr4 25774140 25774179 -176554168 + (CA)n Simple_repeat Simple_repeat 2 40 0 25 31 0 0 chr4 25775251 25775283 -176553064 + AT_rich Low_complexity Low_complexity 1 32 0 24 0 0 0 chr4 25775528 25775552 -176552795 + AT_rich Low_complexity Low_complexity 1 24 0 180 204 0 45 chr4 25775894 25775938 -176552409 - L2 LINE L2 -6 3307 3266 189 256 0 0 chr4 25776044 25776083 -176552264 + L2 LINE L2 3267 3305 -8 204 250 0 0 chr4 25776091 25776139 -176552208 + (TAA)n Simple_repeat Simple_repeat 2 49 0 523 298 26 26 chr4 25776162 25776353 -176551994 - MIR SINE MIR -54 208 18 900 189 4 103 chr4 25777190 25777433 -176550914 + MER20 DNA MER1_type 1 219 0 294 309 0 36 chr4 25779328 25779438 -176548909 + L2 LINE L2 3208 3313 0 228 263 0 0 chr4 25779660 25779717 -176548630 + (TA)n Simple_repeat Simple_repeat 1 57 0 200 159 0 23 chr4 25779744 25779788 -176548559 + (TATG)n Simple_repeat Simple_repeat 4 46 0 2331 71 0 61 chr4 25782260 25782586 -176545761 - AluY SINE Alu -5 306 1 2417 66 3 25 chr4 25786590 25786907 -176541440 - AluY SINE Alu -1 310 1 236 337 56 0 chr4 25787086 25787175 -176541172 - L2 LINE L2 -63 3209 3116 229 348 12 81 chr4 25792423 25792584 -176535763 - L2 LINE L2 -7 3265 3116 204 40 0 0 chr4 25793843 25793868 -176534479 + (TG)n Simple_repeat Simple_repeat 2 26 0 199 282 64 82 chr4 25794087 25794197 -176534150 - L2 LINE L2 -3 3310 3203 183 275 0 0 chr4 25794261 25794301 -176534046 - L2 LINE L2 -15 3257 3218 2007 139 7 3 chr4 25794624 25794919 -176533428 - AluSx SINE Alu -16 296 1 1789 173 0 0 chr4 25795984 25796285 -176532062 + AluSx SINE Alu 1 301 -11 284 289 124 8 chr4 25796365 25796486 -176531861 - L2 LINE L2 -2 3270 3136 322 164 82 27 chr4 25796578 25796651 -176531696 - MIR3 SINE MIR -42 166 90 227 319 69 58 chr4 25796766 25797042 -176531305 - L2 LINE L2 -665 2649 2371 377 253 82 48 chr4 25797410 25797556 -176530791 - MIR SINE MIR -70 192 42 210 167 0 0 chr4 25798405 25798441 -176529906 + L2 LINE L2 3261 3296 -17 180 302 48 0 chr4 25799023 25799086 -176529261 + L2 LINE L2 1157 1222 -2092 1217 172 79 7 chr4 25799449 25799739 -176528608 - L1MA9 LINE L1 -40 6272 5962 1599 209 3 14 chr4 25799740 25800037 -176528310 - AluJo SINE Alu -14 298 5 2145 92 0 17 chr4 25800154 25800499 -176527848 - AluY SINE Alu 0 311 8 344 250 29 6 chr4 25800960 25801132 -176527215 + (TA)n Simple_repeat Simple_repeat 2 177 0 184 318 16 16 chr4 25801391 25801454 -176526893 - MIR SINE MIR -114 148 86 322 241 256 15 chr4 25801499 25801636 -176526711 + MIR SINE MIR 7 176 -86 * 479 214 86 26 chr4 25801633 25801750 -176526597 - L2 LINE L2 0 3313 3190 225 297 0 0 chr4 25801751 25801815 -176526532 + MIR SINE MIR 170 233 -29 442 302 36 7 chr4 25803810 25803949 -176524398 + L2 LINE L2 3169 3311 -2 282 371 39 49 chr4 25804692 25804999 -176523348 + L2 LINE L2 2966 3269 -3 181 273 0 0 chr4 25805137 25805181 -176523166 - L2 LINE L2 -2 3311 3268 2011 144 39 33 chr4 25805296 25805658 -176522689 - THE1B LTR MaLR 0 364 1 276 383 83 0 chr4 25805760 25805880 -176522467 - L2 LINE L2 -2 3270 3141 997 228 50 17 chr4 25806506 25806747 -176521600 - MIR SINE MIR -1 261 13 459 286 161 6 chr4 25808552 25808713 -176519634 + MER5A DNA MER1_type 4 189 0 456 334 46 23 chr4 25809714 25809927 -176518420 + MIR SINE MIR 32 247 -15 577 88 0 0 chr4 25810363 25810443 -176517904 - MADE1 DNA Mariner 0 80 1 217 254 0 0 chr4 25810556 25810611 -176517736 + T-rich Low_complexity Low_complexity 2 56 0 249 278 42 14 chr4 25810679 25810751 -176517596 + L2 LINE L2 3197 3270 -43 278 348 43 7 chr4 25811382 25811425 -176516922 - MIR SINE MIR -70 192 152 2316 51 0 4 chr4 25811425 25811700 -176516647 - AluY SINE Alu -19 292 19 278 348 43 7 chr4 25811700 25811794 -176516553 - MIR SINE MIR -110 152 50 183 247 137 27 chr4 25812512 25812585 -176515762 - MIR SINE MIR -67 141 61 23 33 0 0 chr4 25812673 25812703 -176515644 + AT_rich Low_complexity Low_complexity 1 30 0 384 237 83 47 chr4 25813424 25813593 -176514754 - MER5B DNA MER1_type -2 176 2 522 236 32 57 chr4 25813783 25813940 -176514407 + L2 LINE L2 3152 3304 -9 188 364 0 0 chr4 25814239 25814316 -176514031 + MIR3 SINE MIR 88 164 -44 375 103 46 47 chr4 25815703 25816038 -176512309 + (TATAA)n Simple_repeat Simple_repeat 1 334 0 584 290 202 0 chr4 25816332 25816525 -176511822 - MIR SINE MIR -25 237 6 445 196 23 113 chr4 25817005 25817081 -176511266 - MER5A DNA MER1_type -8 181 120 1198 159 43 0 chr4 25817081 25817289 -176511058 + MER20 DNA MER1_type 1 217 -2 445 196 23 113 chr4 25817289 25817345 -176511002 - MER5A DNA MER1_type -69 120 61 24 32 0 0 chr4 25817976 25818007 -176510340 + AT_rich Low_complexity Low_complexity 1 31 0 22 70 0 0 chr4 25818366 25818409 -176509938 + AT_rich Low_complexity Low_complexity 1 43 0 334 392 104 15 chr4 25818541 25818801 -176509546 - L3 LINE CR1 -1139 438 156 856 277 78 18 chr4 25819223 25819517 -176508830 - L2 LINE L2 -173 3140 2787 316 313 39 0 chr4 25819517 25819645 -176508702 - MER94 DNA DNA 0 134 2 856 277 78 18 chr4 25819645 25819818 -176508529 - L2 LINE L2 -526 2787 2626 2028 133 24 46 chr4 25819821 25820190 -176508157 + THE1B LTR MaLR 2 362 -2 337 336 8 49 chr4 25820232 25820354 -176507993 - MIR3 SINE MIR -91 117 1 195 151 151 19 chr4 25822497 25822550 -176505797 - MIR SINE MIR -122 140 81 387 0 0 0 chr4 25824361 25824404 -176503943 + (CA)n Simple_repeat Simple_repeat 2 44 0 1491 159 21 110 chr4 25825370 25825562 -176502785 - AluYb8 SINE Alu -19 299 146 2288 86 0 3 chr4 25825562 25825852 -176502495 - AluY SINE Alu -22 289 1 985 134 0 0 chr4 25825852 25825986 -176502361 - AluSq/x SINE Alu -178 135 2 375 319 83 7 chr4 25826718 25826862 -176501485 + L2 LINE L2 3116 3270 -2 2523 67 0 3 chr4 25826960 25827272 -176501075 + AluY SINE Alu 1 311 0 251 295 142 35 chr4 25827369 25827630 -176500717 - L2 LINE L2 -836 2478 2190 222 375 23 16 chr4 25827656 25827784 -176500563 + L3 LINE CR1 1446 1574 -3 399 231 161 35 chr4 25828688 25828943 -176499404 - L1ME4a LINE L1 -253 5868 5582 28 71 0 0 chr4 25830156 25830212 -176498135 + AT_rich Low_complexity Low_complexity 1 56 0 399 197 0 25 chr4 25831940 25832062 -176496285 + CT-rich Low_complexity Low_complexity 2 120 0 200 200 0 0 chr4 25833437 25833472 -176494875 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 347 315 102 0 chr4 25834310 25834437 -176493910 + MIR3 SINE MIR 62 201 -7 201 262 16 0 chr4 25834507 25834568 -176493779 + (CATATA)n Simple_repeat Simple_repeat 5 66 0 189 121 0 0 chr4 25835616 25835649 -176492698 + (TG)n Simple_repeat Simple_repeat 2 34 0 201 352 0 9 chr4 25836127 25836232 -176492115 + (TA)n Simple_repeat Simple_repeat 1 104 0 22 35 0 0 chr4 25836545 25836574 -176491773 + AT_rich Low_complexity Low_complexity 1 29 0 348 176 40 0 chr4 25837832 25837906 -176490441 + MER116 DNA Mariner 2 78 -2 500 288 91 26 chr4 25838005 25838223 -176490124 + MIR SINE MIR 30 259 -3 643 242 38 0 chr4 25838718 25838875 -176489472 + MER117 DNA MER1_type 6 168 -29 337 314 57 6 chr4 25840033 25840192 -176488155 - L3b LINE CR1 -110 1473 1307 234 0 0 0 chr4 25841002 25841028 -176487319 + (A)n Simple_repeat Simple_repeat 1 26 0 229 368 0 0 chr4 25842430 25842487 -176485860 + L2 LINE L2 3209 3265 -7 216 214 0 0 chr4 25845213 25845255 -176483092 + T-rich Low_complexity Low_complexity 1 42 0 25 31 0 0 chr4 25846225 25846257 -176482090 + AT_rich Low_complexity Low_complexity 1 32 0 2123 101 0 76 chr4 25847625 25847953 -176480394 + AluSx SINE Alu 1 303 -9 432 318 0 0 chr4 25848270 25848396 -176479951 - MER117 DNA MER1_type -43 154 29 183 262 204 0 chr4 25849789 25849892 -176478455 - L2 LINE L2 -64 3249 3126 746 216 149 3 chr4 25850029 25850311 -176478036 + MER33 DNA MER1_type 1 323 -1 2245 63 0 0 chr4 25851574 25851842 -176476505 - AluY SINE Alu -11 300 33 1287 147 62 23 chr4 25851942 25852074 -176476273 + L1MA10 LINE L1 6015 6140 -194 285 29 0 0 chr4 25852074 25852108 -176476239 + (CA)n Simple_repeat Simple_repeat 1 34 0 1287 147 62 23 chr4 25852108 25852282 -176476065 + L1MA10 LINE L1 6140 6333 -1 198 264 126 11 chr4 25852871 25852958 -176475389 + MIR SINE MIR 156 252 -10 1066 338 56 47 chr4 25854761 25855752 -176472595 - L2 LINE L2 -12 3260 2262 181 381 0 0 chr4 25855865 25855928 -176472419 - L2 LINE L2 -7 3306 3244 285 328 70 30 chr4 25856038 25856239 -176472108 - L3b LINE CR1 -159 1424 1216 454 335 38 32 chr4 25856531 25856716 -176471631 + MER5A DNA MER1_type 3 188 -1 2361 95 0 0 chr4 25857142 25857447 -176470900 - AluSg1 SINE Alu -4 305 1 225 211 22 39 chr4 25858474 25858654 -176469693 + (TG)n Simple_repeat Simple_repeat 2 178 0 24 0 0 0 chr4 25858857 25858881 -176469466 + AT_rich Low_complexity Low_complexity 1 24 0 583 226 15 22 chr4 25858893 25859030 -176469317 - MIR SINE MIR -13 249 114 413 275 134 33 chr4 25859041 25859222 -176469125 - L1ME4a LINE L1 -2 6119 5958 186 71 0 0 chr4 25859222 25859250 -176469097 + (TA)n Simple_repeat Simple_repeat 1 28 0 413 275 134 33 chr4 25859250 25859457 -176468890 - L1ME4a LINE L1 -163 5958 5692 25 31 0 0 chr4 25859574 25859606 -176468741 + AT_rich Low_complexity Low_complexity 1 32 0 484 271 192 9 chr4 25860303 25860517 -176467830 + MIR SINE MIR 6 258 -4 328 213 13 13 chr4 25861438 25861513 -176466834 - L2 LINE L2 -4 3309 3235 2495 87 122 5 chr4 25861596 25861997 -176466350 - LTR7 LTR ERV1 -2 448 1 294 69 52 0 chr4 25864139 25864197 -176464150 + (CAA)n Simple_repeat Simple_repeat 3 63 0 302 115 19 0 chr4 25864309 25864361 -176463986 + (TG)n Simple_repeat Simple_repeat 1 53 0 243 0 0 0 chr4 25864515 25864542 -176463805 + (TA)n Simple_repeat Simple_repeat 2 28 0 234 0 0 0 chr4 25864565 25864591 -176463756 + (CCAA)n Simple_repeat Simple_repeat 1 26 0 243 0 0 0 chr4 25864753 25864780 -176463567 + (TC)n Simple_repeat Simple_repeat 2 28 0 354 317 37 6 chr4 25872535 25872699 -176455648 - MIR SINE MIR -2 260 92 22 0 0 0 chr4 25872949 25872971 -176455376 + AT_rich Low_complexity Low_complexity 1 22 0 450 131 30 0 chr4 25873016 25873115 -176455232 + (TCTA)n Simple_repeat Simple_repeat 1 102 0 2089 111 10 7 chr4 25873411 25873699 -176454648 + AluSx SINE Alu 1 289 -23 7600 24 0 13 chr4 25874496 25875951 -176452396 - L1PA3 LINE L1 0 6155 4709 2264 81 6 50 chr4 25878205 25878528 -176449819 + AluSc SINE Alu 1 309 0 202 327 187 19 chr4 25878898 25879005 -176449342 - L2 LINE L2 -9 3263 3139 298 319 43 17 chr4 25879013 25879129 -176449218 - L2 LINE L2 -8 3305 3187 1325 96 0 0 chr4 25880820 25880986 -176447361 + AluSx SINE Alu 26 191 -121 391 328 40 75 chr4 25881673 25881926 -176446421 - L2 LINE L2 -96 3176 2933 725 299 38 46 chr4 25882020 25882398 -176445949 + L1ME3 LINE L1 5455 5829 -333 31 26 0 0 chr4 25882435 25882473 -176445874 + AT_rich Low_complexity Low_complexity 1 38 0 976 133 0 0 chr4 25882607 25882742 -176445605 + AluSq SINE Alu 35 169 -144 2057 147 0 3 chr4 25882924 25883237 -176445110 - AluSx SINE Alu 0 312 1 361 226 212 22 chr4 25883756 25883893 -176444454 - MIR SINE MIR -16 246 84 195 100 0 0 chr4 25884148 25884178 -176444169 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 2354 154 0 8 chr4 25884790 25885167 -176443180 + L1PA16 LINE L1 5793 6166 0 211 280 176 48 chr4 25885393 25885518 -176442829 + MER5B DNA MER1_type 27 167 -11 938 184 5 65 chr4 25885528 25885650 -176442697 - MER5B DNA MER1_type -4 174 65 2388 88 17 0 chr4 25885650 25885946 -176442401 - AluSx SINE Alu -11 301 1 938 184 5 65 chr4 25885946 25886008 -176442339 - MER5B DNA MER1_type -113 65 1 2044 116 10 42 chr4 25886048 25886358 -176441989 + AluSq SINE Alu 1 300 -13 442 288 134 18 chr4 25888800 25889079 -176439268 + L2 LINE L2 2716 3025 -288 341 302 70 12 chr4 25889131 25889303 -176439044 - LTR16C LTR ERVL 0 491 310 2470 54 0 3 chr4 25889551 25889846 -176438501 - AluY SINE Alu -2 309 16 409 227 57 0 chr4 25890042 25890147 -176438200 + MIR SINE MIR 61 170 -62 449 266 191 25 chr4 25891143 25891342 -176437005 + MIR SINE MIR 21 252 -10 209 409 0 11 chr4 25891412 25891500 -176436847 - L2 LINE L2 -18 3254 3168 616 307 91 13 chr4 25892036 25892267 -176436080 + MIR SINE MIR 14 262 0 225 247 57 95 chr4 25892696 25892854 -176435493 + L1ME LINE L1 5470 5621 -543 2277 117 0 0 chr4 25892989 25893288 -176435059 - AluSx SINE Alu -13 299 1 282 271 36 50 chr4 25893302 25893442 -176434905 + MER104 DNA Tc2 39 176 -4 1159 244 67 132 chr4 25894283 25895026 -176433321 - L2 LINE L2 -1 3312 2522 1674 65 0 0 chr4 25895026 25895225 -176433122 + AluY SINE Alu 1 199 -112 439 47 0 151 chr4 25895225 25895311 -176433036 + AluY SINE Alu 239 311 0 1159 244 67 132 chr4 25895311 25895575 -176432772 - L2 LINE L2 -789 2524 2301 350 206 53 175 chr4 25896391 25896580 -176431767 + MIR SINE MIR 41 206 -2 347 302 26 79 chr4 25896762 25896818 -176431529 + MIR SINE MIR 20 77 -185 2071 119 0 7 chr4 25896818 25897104 -176431243 - AluSx SINE Alu -7 305 22 347 302 26 79 chr4 25897104 25897236 -176431111 + MIR SINE MIR 77 198 -64 210 71 0 0 chr4 25897262 25897290 -176431057 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 473 232 0 0 chr4 25897315 25897414 -176430933 - LTR33A LTR ERVL -2 521 423 212 310 50 20 chr4 25897604 25897704 -176430643 - MIR SINE MIR -110 152 50 739 265 31 31 chr4 25897997 25898254 -176430093 + MIR SINE MIR 6 262 0 740 290 41 41 chr4 25898729 25898974 -176429373 + MIR SINE MIR 6 250 -12 2545 56 0 0 chr4 25899556 25899862 -176428485 - AluY SINE Alu -5 306 1 222 91 0 0 chr4 25900104 25900137 -176428210 + (TG)n Simple_repeat Simple_repeat 2 34 0 203 229 43 71 chr4 25902177 25902247 -176426100 - L2 LINE L2 -11 3302 3235 1736 150 0 0 chr4 25902540 25902794 -176425553 - AluSx SINE Alu -7 305 52 233 267 48 38 chr4 25903381 25903486 -176424861 - MIR SINE MIR -70 192 87 335 237 141 22 chr4 25903529 25903664 -176424683 - MIR SINE MIR -10 252 102 597 284 0 25 chr4 25903720 25903917 -176424430 - Charlie7 DNA MER1_type -1 2611 2420 1103 211 9 44 chr4 25904040 25904267 -176424080 - MER20 DNA MER1_type 0 219 1 349 285 58 29 chr4 25904596 25904733 -176423614 + MIR SINE MIR 9 149 -113 231 240 90 50 chr4 25904779 25904879 -176423468 + MIR SINE MIR 146 249 -13 224 77 26 0 chr4 25904895 25904934 -176423413 + (TA)n Simple_repeat Simple_repeat 2 41 0 319 243 81 36 chr4 25904958 25905069 -176423278 + L2 LINE L2 3194 3309 -4 266 167 17 0 chr4 25905265 25905325 -176423022 + CT-rich Low_complexity Low_complexity 1 61 0 1612 187 14 14 chr4 25905331 25905620 -176422727 - AluJo SINE Alu -23 289 1 1177 132 0 42 chr4 25906771 25906960 -176421387 - AluSx SINE Alu -127 185 5 2015 134 6 16 chr4 25908389 25908703 -176419644 + AluSx SINE Alu 1 311 -1 335 129 12 35 chr4 25908978 25909063 -176419284 + CT-rich Low_complexity Low_complexity 3 85 0 384 237 153 17 chr4 25909080 25909198 -176419149 - L2 LINE L2 -1 3312 3179 277 282 0 12 chr4 25909907 25909992 -176418355 + T-rich Low_complexity Low_complexity 3 86 0 1682 109 0 0 chr4 25910046 25910257 -176418090 - AluSq SINE Alu -102 211 1 274 260 43 61 chr4 25911255 25911336 -176417011 + L1ME4a LINE L1 5704 5785 -336 1844 125 88 0 chr4 25911336 25911608 -176416739 + AluSx SINE Alu 1 296 -16 274 260 43 61 chr4 25911608 25911803 -176416544 + L1ME4a LINE L1 5785 5975 -146 244 265 60 43 chr4 25912444 25912561 -176415786 + L2 LINE L2 3195 3313 0 1209 137 0 0 chr4 25912981 25913156 -176415191 - AluSq SINE Alu -9 304 130 494 278 139 19 chr4 25914264 25914473 -176413874 - MIR SINE MIR -18 244 11 399 127 0 0 chr4 25914940 25915003 -176413344 + (TG)n Simple_repeat Simple_repeat 1 63 0 2434 90 0 0 chr4 25915464 25915763 -176412584 - AluSq SINE Alu -14 299 1 324 248 178 51 chr4 25915778 25915992 -176412355 - L2 LINE L2 -25 3247 3007 400 311 59 10 chr4 25917226 25917432 -176410915 - MIR SINE MIR -11 251 36 184 91 30 0 chr4 25917754 25917787 -176410560 + L2 LINE L2 3280 3313 0 421 316 43 7 chr4 25918133 25918272 -176410075 + MIR SINE MIR 1 144 -118 429 297 29 35 chr4 25918844 25919018 -176409329 + MIR SINE MIR 7 188 -63 28 0 0 26 chr4 25919054 25919071 -176409276 + AT_rich Low_complexity Low_complexity 1 17 -21 2438 75 0 7 chr4 25919071 25919376 -176408971 - AluY SINE Alu -8 303 1 28 0 0 26 chr4 25919376 25919397 -176408950 + AT_rich Low_complexity Low_complexity 17 38 0 241 221 44 29 chr4 25920037 25920105 -176408242 - L2 LINE L2 -219 3053 2985 4202 161 26 20 chr4 25920278 25921013 -176407334 - L1MB3 LINE L1 -1 6182 5444 385 320 79 63 chr4 25921557 25921951 -176406396 + L2 LINE L2 2914 3313 0 408 246 20 116 chr4 25921960 25922159 -176406188 - MIR3 SINE MIR -10 198 19 713 291 46 12 chr4 25922187 25922408 -176405939 + MIR SINE MIR 34 261 -1 235 167 19 0 chr4 25922745 25922799 -176405548 + T-rich Low_complexity Low_complexity 3 57 0 649 275 66 37 chr4 25922974 25923218 -176405129 - MIR SINE MIR 0 262 12 228 276 11 11 chr4 25923365 25923452 -176404895 + CT-rich Low_complexity Low_complexity 2 88 0 750 27 0 7 chr4 25923689 25923782 -176404565 - L1HS LINE L1 -3 6165 6062 * 773 0 11 0 chr4 25923781 25923874 -176404473 + L1HS LINE L1 5964 6057 -98 207 0 0 0 chr4 25924352 25924375 -176403972 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 240 226 11 54 chr4 25924691 25924784 -176403563 + CT-rich Low_complexity Low_complexity 3 91 0 229 174 0 0 chr4 25925345 25925391 -176402956 + MIR SINE MIR 120 165 -97 502 256 159 19 chr4 25926196 25926403 -176401944 + MIR SINE MIR 6 241 -21 212 267 13 0 chr4 25926428 25926503 -176401844 - MIR SINE MIR -9 253 178 386 293 21 48 chr4 25926553 25926741 -176401606 + L2 LINE L2 3115 3297 -16 3245 54 0 0 chr4 25926866 25927256 -176401091 + L1P3 LINE L1 5409 5798 -374 194 289 0 0 chr4 25927492 25927537 -176400810 + L2 LINE L2 3269 3313 0 5466 122 13 2 chr4 25929285 25930153 -176398194 + L1PA16 LINE L1 5254 6130 -36 22 35 0 0 chr4 25931349 25931378 -176396969 + AT_rich Low_complexity Low_complexity 1 29 0 183 80 0 0 chr4 25931987 25932012 -176396335 + (ATATG)n Simple_repeat Simple_repeat 1 25 0 256 159 16 16 chr4 25932069 25932132 -176396215 + CT-rich Low_complexity Low_complexity 2 64 0 462 65 0 0 chr4 25932293 25932355 -176395992 + (CA)n Simple_repeat Simple_repeat 2 63 0 26 30 0 0 chr4 25935859 25935892 -176392455 + AT_rich Low_complexity Low_complexity 1 33 0 254 326 21 0 chr4 25936485 25936580 -176391767 - MIR3 SINE MIR -6 202 106 506 271 96 27 chr4 25936629 25936817 -176391530 - MIR SINE MIR -15 247 47 471 35 0 0 chr4 25937464 25937521 -176390826 + (TG)n Simple_repeat Simple_repeat 2 58 0 400 342 92 70 chr4 25937883 25938111 -176390236 - L2 LINE L2 -1 3271 3039 395 225 28 120 chr4 25938152 25938314 -176390033 + MIR SINE MIR 44 186 -63 250 340 105 39 chr4 25940797 25941343 -176387004 + L2 LINE L2 2566 3149 -123 428 310 70 0 chr4 25941769 25941898 -176386449 + L2 LINE L2 3133 3270 -2 27 0 0 0 chr4 25941954 25941981 -176386366 + AT_rich Low_complexity Low_complexity 1 27 0 224 372 101 0 chr4 25942086 25942215 -176386132 + L3 LINE CR1 1430 1571 -6 522 302 116 9 chr4 25943075 25943300 -176385047 - MIR SINE MIR -13 249 1 817 214 71 0 chr4 25943359 25943555 -176384792 + MER20 DNA MER1_type 10 219 0 212 139 0 23 chr4 25943735 25943778 -176384569 + (GAA)n Simple_repeat Simple_repeat 1 42 0 315 0 0 0 chr4 25944650 25944685 -176383662 + (CA)n Simple_repeat Simple_repeat 1 35 0 1613 152 42 4 chr4 25945084 25945347 -176383000 + AluJb SINE Alu 19 291 -21 25 0 0 0 chr4 25945353 25945378 -176382969 + AT_rich Low_complexity Low_complexity 1 25 0 190 204 183 75 chr4 25945660 25945753 -176382594 - MER5A DNA MER1_type -43 146 44 217 190 52 69 chr4 25945688 25945746 -176382601 + MER5B DNA MER1_type 72 128 -50 284 235 24 24 chr4 25946305 25946390 -176381957 + GA-rich Low_complexity Low_complexity 5 89 0 231 243 36 45 chr4 25946679 25946790 -176381557 + MER113 DNA MER1_type? 7 116 -405 831 209 134 0 chr4 25946896 25947083 -176381264 + MIR SINE MIR 1 212 -50 287 314 88 24 chr4 25947379 25947510 -176380837 - MIR SINE MIR -45 163 25 186 195 39 0 chr4 25947675 25947752 -176380595 + (TTA)n Simple_repeat Simple_repeat 2 81 0 335 230 14 2 chr4 25947964 25948050 -176380297 + MER5A DNA MER1_type 36 131 -57 463 250 8 8 chr4 25949144 25949276 -176379071 + L1MC4 LINE L1 7910 8041 -1 411 233 308 0 chr4 25949343 25949476 -176378871 - MER96 DNA MER1_type 0 175 2 188 182 227 23 chr4 25949655 25949699 -176378648 - L2 LINE L2 -50 3222 3170 1986 144 3 41 chr4 25949846 25950166 -176378181 - AluSq SINE Alu -5 308 1 35 0 0 0 chr4 25950240 25950275 -176378072 + AT_rich Low_complexity Low_complexity 1 35 0 186 359 0 0 chr4 25950601 25950665 -176377682 + L2 LINE L2 3245 3308 -5 206 243 0 0 chr4 25950707 25950744 -176377603 + L2 LINE L2 3231 3267 -46 5252 35 2 14 chr4 25951481 25952169 -176376178 + L1PA4 LINE L1 5528 6155 0 199 295 63 32 chr4 25952202 25952297 -176376050 - L2 LINE L2 -35 3278 3181 279 275 50 53 chr4 25953616 25953736 -176374611 - MIR3 SINE MIR -18 190 70 1241 238 120 26 chr4 25953763 25954229 -176374118 + MLT1H LTR MaLR 18 527 -22 23 0 0 0 chr4 25954320 25954343 -176374004 + AT_rich Low_complexity Low_complexity 1 23 0 310 223 8 92 chr4 25954669 25954799 -176373548 + MER113 DNA MER1_type? 1 119 -402 253 327 167 18 chr4 25955554 25955722 -176372625 + L3 LINE CR1 404 596 -981 524 294 71 47 chr4 25955767 25955978 -176372369 + MIR SINE MIR 47 262 0 551 314 169 30 chr4 25955992 25956464 -176371883 + L3 LINE CR1 559 1096 -481 2593 49 12 0 chr4 25956465 25956790 -176371557 - L1PA8 LINE L1 -4 6168 5840 403 256 0 0 chr4 25956925 25957007 -176371340 - Tigger3(Golem) DNA MER2_type -2947 82 1 2113 129 6 22 chr4 25957693 25958010 -176370337 + AluSx SINE Alu 1 312 0 453 100 14 14 chr4 25958447 25958517 -176369830 + AluSp SINE Alu 91 160 -153 210 209 58 35 chr4 25958832 25958918 -176369429 + (CCCCG)n Simple_repeat Simple_repeat 2 89 0 217 232 0 42 chr4 25959147 25959242 -176369105 + (CCCCG)n Simple_repeat Simple_repeat 2 92 0 1951 122 80 0 chr4 25961426 25961713 -176366634 - AluSx SINE Alu -2 310 1 280 222 56 0 chr4 25961768 25961858 -176366489 - L1ME LINE L1 -254 5867 5773 1285 136 50 3 chr4 25962328 25962626 -176365721 - MER84 LTR ERVI 0 507 113 231 206 0 137 chr4 25963128 25963201 -176365146 + L2 LINE L2 3207 3269 -3 2203 89 20 0 chr4 25963395 25963688 -176364659 + AluSx SINE Alu 1 299 -13 439 204 73 98 chr4 25964496 25964771 -176363576 + L1MC4 LINE L1 7751 8018 -24 194 191 0 24 chr4 25964864 25964906 -176363441 - MIR SINE MIR -117 145 105 181 344 122 15 chr4 25964959 25965090 -176363257 - L2 LINE L2 -28 3244 3100 271 230 11 58 chr4 25965118 25965205 -176363142 + L2 LINE L2 2932 3014 -258 258 196 265 10 chr4 25967765 25967867 -176360480 + MIR SINE MIR 19 146 -62 2047 119 6 45 chr4 25968654 25968789 -176359558 + AluSx SINE Alu 1 140 -172 2438 71 0 0 chr4 25968789 25969095 -176359252 + AluY SINE Alu 1 306 0 2047 119 6 45 chr4 25969095 25969269 -176359078 + AluSx SINE Alu 140 299 -13 189 203 80 123 chr4 25969519 25969657 -176358690 - MIR SINE MIR -61 147 16 182 264 81 23 chr4 25970223 25970310 -176358037 + MIR SINE MIR 48 139 -69 260 258 21 65 chr4 25970386 25970479 -176357868 - MIR SINE MIR -113 149 61 436 179 15 0 chr4 25971734 25971801 -176356546 + AluJ/FLAM SINE Alu 2 69 -243 1578 160 11 25 chr4 25971802 25972077 -176356270 + AluJo SINE Alu 31 301 -11 423 189 11 22 chr4 25972108 25972198 -176356149 - MIR SINE MIR -71 191 103 347 297 89 50 chr4 25972206 25972465 -176355882 + L3 LINE CR1 1277 1545 -32 250 254 42 0 chr4 25972661 25972732 -176355615 - MER96 DNA MER1_type? -98 77 4 241 364 23 8 chr4 25973183 25973312 -176355035 + L2 LINE L2 3180 3310 -3 354 45 0 0 chr4 25973774 25973818 -176354529 + (CA)n Simple_repeat Simple_repeat 1 44 0 273 293 12 12 chr4 25974526 25974608 -176353739 - MIR SINE MIR -87 121 40 1148 294 173 27 chr4 25975006 25975961 -176352386 + L2 LINE L2 2208 3310 -3 191 274 20 96 chr4 25976285 25976431 -176351916 + L2 LINE L2 3136 3270 -2 206 295 86 19 chr4 25977748 25977853 -176350494 - MIR3 SINE MIR -34 174 63 1945 141 7 3 chr4 25979533 25979837 -176348510 - AluJo SINE Alu -7 305 1 2245 89 0 13 chr4 25979849 25980152 -176348195 - AluY SINE Alu -12 299 1 368 240 88 41 chr4 25980880 25980929 -176347418 + L1MC4 LINE L1 7864 7909 -133 405 0 0 0 chr4 25980929 25980974 -176347373 + (CA)n Simple_repeat Simple_repeat 2 46 0 368 240 88 41 chr4 25980974 25981095 -176347252 + L1MC4 LINE L1 7909 8042 0 270 222 10 50 chr4 25981782 25981881 -176346466 + CT-rich Low_complexity Low_complexity 4 98 0 328 329 0 13 chr4 25982468 25982623 -176345724 + C-rich Low_complexity Low_complexity 5 157 0 233 209 17 26 chr4 25982683 25982798 -176345549 + CT-rich Low_complexity Low_complexity 1 114 0 195 239 319 35 chr4 25985115 25985228 -176343119 - MIR3 SINE MIR -62 146 2 328 301 0 0 chr4 25985803 25985886 -176342461 + (CA)n Simple_repeat Simple_repeat 2 84 0 189 315 68 93 chr4 25986099 25986261 -176342086 + MIR3 SINE MIR 5 162 -46 250 244 37 12 chr4 25987747 25987829 -176340518 + L3 LINE CR1 1156 1239 -338 279 328 92 23 chr4 25992539 25992713 -176335634 + MIR3 SINE MIR 21 206 -2 653 128 84 84 chr4 25993089 25993231 -176335116 - MER53 DNA DNA -1 188 44 2197 77 11 0 chr4 25993231 25993518 -176334829 + AluSx SINE Alu 1 290 -22 653 128 84 84 chr4 25993518 25993554 -176334793 - MER53 DNA DNA -144 45 10 1502 147 13 40 chr4 25994122 25994422 -176333925 - AluSx SINE Alu -20 292 1 1612 143 66 0 chr4 25994911 25995197 -176333150 + AluJb SINE Alu 1 305 -7 1818 88 0 119 chr4 25995201 25995519 -176332828 - AluSg SINE Alu -12 298 19 503 277 13 26 chr4 25995540 25995695 -176332652 + LTR24B LTR ERV1 417 569 -7 974 135 0 14 chr4 25995712 25995860 -176332487 + AluSq/x SINE Alu 1 146 -167 1940 110 22 0 chr4 25995860 25996132 -176332215 + AluSx SINE Alu 1 278 -34 2039 112 11 0 chr4 25996232 25996518 -176331829 + AluSg SINE Alu 11 299 -11 433 182 159 0 chr4 25996523 25996611 -176331736 - FLAM_A SINE Alu -27 115 14 1827 174 0 3 chr4 25996751 25997056 -176331291 + AluSx SINE Alu 5 308 -4 2075 100 17 0 chr4 25997059 25997358 -176330989 + AluSp SINE Alu 1 304 -9 2051 106 34 3 chr4 25997624 25997916 -176330431 - AluSq SINE Alu -12 301 1 2013 91 29 0 chr4 25998425 25998701 -176329646 + AluSx SINE Alu 9 292 -20 455 246 27 0 chr4 25999654 25999764 -176328583 - HAL1 LINE L1 -741 1766 1654 1221 141 0 0 chr4 25999837 26000028 -176328319 - AluSp SINE Alu -2 311 121 348 312 35 52 chr4 26000029 26000202 -176328145 - L1M4 LINE L1 -852 5294 5125 397 192 40 20 chr4 26000203 26000302 -176328045 + LTR24B LTR ERV1 3 103 -473 279 65 0 0 chr4 26000302 26000348 -176327999 - Alu SINE Alu 0 308 263 1896 123 10 7 chr4 26000649 26000950 -176327397 + AluSx SINE Alu 3 304 -8 2112 119 3 3 chr4 26001117 26001420 -176326927 - AluSq SINE Alu -10 303 1 2271 110 0 0 chr4 26001999 26002307 -176326040 - AluSx SINE Alu -4 308 1 187 161 0 0 chr4 26002789 26002820 -176325527 - L2 LINE L2 -16 3256 3226 313 183 86 11 chr4 26004970 26005063 -176323284 - LTR24B LTR ERV1 -473 103 4 1713 172 0 25 chr4 26005185 26005504 -176322843 - AluJb SINE Alu -1 311 1 1750 169 33 0 chr4 26005784 26006085 -176322262 - AluJo SINE Alu -1 311 1 1897 112 19 0 chr4 26006186 26006273 -176322074 + AluSx SINE Alu 40 124 -188 306 0 0 0 chr4 26006273 26006307 -176322040 + (CAA)n Simple_repeat Simple_repeat 3 36 0 1897 112 19 0 chr4 26006307 26006486 -176321861 + AluSx SINE Alu 124 311 -1 256 325 50 0 chr4 26006852 26006932 -176321415 + MIR SINE MIR 50 133 -129 564 211 158 0 chr4 26006992 26007106 -176321241 + MER45A DNA AcHobo 3 134 -44 356 330 10 0 chr4 26007223 26007326 -176321021 - L1M4 LINE L1 -1860 4286 4183 2044 110 33 3 chr4 26007332 26007632 -176320715 - AluSx SINE Alu -3 309 1 825 125 0 0 chr4 26007649 26007769 -176320578 + MER84 LTR ERVI 2 121 -386 229 170 0 0 chr4 26007890 26007937 -176320410 + L1MB4 LINE L1 6134 6180 0 1864 102 27 0 chr4 26008159 26008415 -176319932 - AluSg SINE Alu -14 296 34 279 292 45 0 chr4 26009589 26009678 -176318669 + L1ME1 LINE L1 6034 6126 -40 659 128 243 20 chr4 26009682 26009830 -176318517 - AluSx SINE Alu -25 287 107 573 233 24 14 chr4 26010083 26010245 -176318102 + MIR SINE MIR 35 205 -57 2147 120 10 0 chr4 26011548 26011856 -176316491 - AluSx SINE Alu -1 311 1 2243 103 7 0 chr4 26011861 26012171 -176316176 - AluSq SINE Alu -1 312 1 818 108 8 8 chr4 26013307 26013427 -176314920 - AluSx SINE Alu -183 130 11 1762 134 44 0 chr4 26013527 26013802 -176314545 + AluJb SINE Alu 12 298 -14 307 310 149 74 chr4 26014661 26015096 -176313251 - L1M4 LINE L1 -2842 3304 2837 2105 108 0 0 chr4 26015893 26016180 -176312167 + AluSx SINE Alu 1 287 -25 257 235 12 0 chr4 26016180 26016265 -176312082 + (TA)n Simple_repeat Simple_repeat 1 86 0 333 0 0 0 chr4 26017582 26017619 -176310728 + (TTA)n Simple_repeat Simple_repeat 2 38 0 2113 109 10 22 chr4 26018221 26018533 -176309814 - AluSx SINE Alu -4 308 1 547 246 98 58 chr4 26018598 26018786 -176309561 - L1MC4 LINE L1 -5 8037 7833 2274 88 0 0 chr4 26018786 26019081 -176309266 - AluSg SINE Alu -15 295 1 547 246 98 58 chr4 26019081 26019169 -176309178 - L1MC4 LINE L1 -209 7833 7750 186 266 138 21 chr4 26019231 26019325 -176309022 + MIR SINE MIR 20 124 -84 2248 79 7 0 chr4 26019441 26019744 -176308603 - AluSp SINE Alu -8 305 1 1531 137 29 46 chr4 26019744 26020072 -176308275 - AluSq SINE Alu 0 313 1 1440 214 10 3 chr4 26020078 26020399 -176307948 - AluJo SINE Alu 0 323 1 256 260 73 21 chr4 26020963 26021059 -176307288 - MIR SINE MIR -78 130 30 374 328 0 23 chr4 26021727 26021855 -176306492 + MIR SINE MIR 27 151 -111 364 131 16 0 chr4 26021871 26021931 -176306416 + MLT2C1 LTR ERVL 11 71 -393 323 73 0 0 chr4 26021931 26021972 -176306375 + Alu SINE Alu 1 41 -260 1492 106 22 13 chr4 26021972 26022230 -176306117 + AluSg/x SINE Alu 72 310 0 1615 192 34 3 chr4 26022231 26022554 -176305793 + MLT2C1 LTR ERVL 64 396 -1 188 301 68 0 chr4 26022637 26022710 -176305637 - MIR SINE MIR -108 154 77 246 285 70 83 chr4 26023128 26023312 -176305035 - Charlie8 DNA MER1_type -2103 314 132 1638 154 50 0 chr4 26023312 26023592 -176304755 - AluJb SINE Alu -18 294 1 246 285 70 83 chr4 26023592 26023635 -176304712 - Charlie8 DNA MER1_type -2285 132 90 353 274 183 5 chr4 26023861 26024037 -176304310 - L1MC4a LINE L1 -346 5824 5691 1540 116 0 13 chr4 26024083 26024308 -176304039 + AluSg/x SINE Alu 86 307 -5 1290 83 0 47 chr4 26024329 26024522 -176303825 - AluY SINE Alu -14 297 114 1352 164 9 0 chr4 26024622 26024841 -176303506 + Tigger3(Golem) DNA MER2_type 2807 3027 -2 1823 142 49 9 chr4 26024850 26025175 -176303172 - MER47A DNA MER2_type 0 366 29 2132 123 16 0 chr4 26025176 26025484 -176302863 + AluSq SINE Alu 1 313 0 258 167 0 0 chr4 26025506 26025548 -176302799 - MER47A DNA MER2_type -324 42 1 1746 159 5 101 chr4 26025548 26025673 -176302674 + L1MC4 LINE L1 6695 6830 -1212 1659 173 6 28 chr4 26025673 26025991 -176302356 + AluJo SINE Alu 1 311 -1 1746 159 5 101 chr4 26025991 26026279 -176302068 + L1MC4 LINE L1 6830 7068 -974 200 358 64 0 chr4 26026775 26026884 -176301463 + MIR SINE MIR 48 163 -99 2022 128 3 3 chr4 26026938 26027244 -176301103 + AluSx SINE Alu 5 310 -2 228 35 0 0 chr4 26028165 26028194 -176300153 + (CAGGG)n Simple_repeat Simple_repeat 1 29 0 666 306 138 25 chr4 26028253 26028687 -176299660 + L2 LINE L2 2826 3308 -5 1356 154 5 9 chr4 26028749 26028970 -176299377 + AluSx SINE Alu 1 220 -92 1976 146 3 23 chr4 26032520 26032822 -176295525 - AluSx SINE Alu -10 302 7 1858 152 45 0 chr4 26032830 26033120 -176295227 - AluJb SINE Alu -9 303 1 334 326 23 8 chr4 26038183 26038315 -176290032 - L2 LINE L2 -6 3307 3174 200 238 0 0 chr4 26038482 26038524 -176289823 - MIR SINE MIR -110 152 111 346 289 19 0 chr4 26039409 26039513 -176288834 + L2 LINE L2 3207 3312 -1 216 214 0 0 chr4 26039571 26039627 -176288720 + (TAGA)n Simple_repeat Simple_repeat 1 56 0 640 123 18 0 chr4 26040308 26040422 -176287925 + CT-rich Low_complexity Low_complexity 3 118 0 1869 160 28 3 chr4 26040422 26040709 -176287638 - AluJb SINE Alu -18 294 1 1843 133 51 17 chr4 26040709 26041002 -176287345 - AluJb SINE Alu -9 303 1 297 320 92 7 chr4 26042134 26042287 -176286060 + MIR SINE MIR 20 185 -77 2371 112 0 3 chr4 26042772 26043085 -176285262 - AluSx SINE Alu 0 312 1 466 355 116 20 chr4 26043724 26044121 -176284226 - L2 LINE L2 -1 3312 2878 2257 100 3 17 chr4 26044194 26044494 -176283853 - AluSx SINE Alu -16 296 1 1696 141 7 19 chr4 26044499 26044769 -176283578 - AluJb SINE Alu -25 287 21 302 342 18 0 chr4 26045927 26046038 -176282309 - L2 LINE L2 -2048 1266 1154 827 218 18 0 chr4 26046198 26046363 -176281984 - FRAM SINE Alu -12 164 1 2557 151 44 13 chr4 26046743 26047268 -176281079 + L1MB7 LINE L1 5644 6184 0 2434 93 3 3 chr4 26047896 26048208 -176280139 + AluSp SINE Alu 1 312 -1 2143 119 33 6 chr4 26049578 26049915 -176278432 + MER7A DNA MER2_type 2 345 -1 194 336 55 55 chr4 26049918 26049937 -176278410 - MIR3 SINE MIR -41 167 149 1856 141 14 27 chr4 26049937 26050234 -176278113 - AluJo SINE Alu -19 293 1 194 336 55 55 chr4 26050234 26050342 -176278005 - MIR3 SINE MIR -58 150 40 408 194 0 0 chr4 26050729 26050811 -176277536 + AluS SINE Alu 1 64 -237 1204 133 80 5 chr4 26050911 26051099 -176277248 + AluJb SINE Alu 96 297 -15 2505 85 0 0 chr4 26051289 26051594 -176276753 + AluY SINE Alu 1 305 -6 498 241 40 14 chr4 26051921 26052086 -176276261 - MIR SINE MIR -56 206 34 219 348 71 21 chr4 26052122 26052263 -176276084 - MIR SINE MIR -6 256 109 2152 98 33 16 chr4 26052955 26053321 -176275026 + L1PA15 LINE L1 5794 6165 0 2359 86 6 13 chr4 26053360 26053493 -176274854 + AluY SINE Alu 1 133 -178 2580 70 0 0 chr4 26053493 26053794 -176274553 + AluY SINE Alu 1 301 -10 2359 86 6 13 chr4 26053794 26053973 -176274374 + AluY SINE Alu 133 311 0 1733 175 13 26 chr4 26056396 26056699 -176271648 - AluJo SINE Alu -13 299 1 2121 149 0 0 chr4 26057235 26057537 -176270810 - AluSx SINE Alu -10 302 1 2158 127 0 0 chr4 26058420 26058728 -176269619 - AluSx SINE Alu 0 308 1 1667 182 13 26 chr4 26059020 26059322 -176269025 - AluJo SINE Alu -10 302 5 1708 133 8 0 chr4 26060002 26060243 -176268104 - AluSx SINE Alu -69 243 1 1520 112 62 4 chr4 26060271 26060531 -176267816 + L1MB3 LINE L1 5900 6174 -9 2179 125 20 0 chr4 26060583 26060886 -176267461 + AluSx SINE Alu 1 309 -3 191 261 22 0 chr4 26063204 26063250 -176265097 + MIR SINE MIR 216 262 0 206 261 54 65 chr4 26063865 26063957 -176264390 + MIR SINE MIR 86 176 -86 2160 104 40 0 chr4 26063961 26064259 -176264088 - AluSx SINE Alu -2 310 1 317 269 67 17 chr4 26064299 26064418 -176263929 + MIR SINE MIR 16 140 -68 181 229 292 0 chr4 26064907 26065003 -176263344 + MER5A DNA MER1_type 42 165 -24 242 319 187 0 chr4 26065069 26065160 -176263187 + MIR SINE MIR 38 145 -63 280 267 23 17 chr4 26065252 26065428 -176262919 + CT-rich Low_complexity Low_complexity 2 178 0 225 0 0 0 chr4 26065682 26065707 -176262640 + (TTTTTA)n Simple_repeat Simple_repeat 2 26 0 2215 104 4 0 chr4 26066628 26067026 -176261321 - AluSx SINE Alu 0 399 1 1865 72 0 0 chr4 26068337 26068559 -176259788 - AluY SINE Alu 0 311 90 1836 84 63 0 chr4 26068659 26068898 -176259449 - AluY SINE Alu -57 254 1 855 178 11 52 chr4 26068959 26069133 -176259214 + AluJb SINE Alu 125 291 -21 2291 119 3 0 chr4 26069747 26070050 -176258297 - AluSx SINE Alu -7 305 2 2152 123 3 0 chr4 26070793 26071086 -176257261 - AluSx SINE Alu -18 294 1 842 212 17 6 chr4 26071288 26071467 -176256880 + MER5A DNA MER1_type 3 183 -6 3621 158 68 6 chr4 26071521 26072228 -176256119 - L1MB7 LINE L1 -16 6168 5418 2285 102 23 0 chr4 26072778 26073083 -176255264 - AluSp SINE Alu -1 312 1 2386 89 7 0 chr4 26073581 26073884 -176254463 - AluSq SINE Alu -8 305 1 223 282 35 12 chr4 26074994 26075079 -176253268 - MIR SINE MIR -99 163 77 245 310 28 0 chr4 26078183 26078254 -176250093 - MIR SINE MIR -124 138 66 2606 60 3 0 chr4 26078691 26078992 -176249355 + AluSp SINE Alu 1 302 -11 286 224 208 27 chr4 26079329 26079512 -176248835 - L1ME4a LINE L1 -101 6020 5805 266 342 0 0 chr4 26082330 26082406 -176245941 + MIR SINE MIR 47 122 -140 276 343 105 12 chr4 26082415 26082587 -176245760 + MIR SINE MIR 66 253 -9 578 305 135 17 chr4 26083183 26083664 -176244683 + L2 LINE L2 2738 3270 -2 195 129 0 0 chr4 26084374 26084405 -176243942 + (GGGA)n Simple_repeat Simple_repeat 4 34 0 319 274 9 18 chr4 26084446 26084559 -176243788 + (CAGAGA)n Simple_repeat Simple_repeat 2 113 0 249 33 0 0 chr4 26086759 26086789 -176241558 + (CTCA)n Simple_repeat Simple_repeat 2 31 0 256 319 109 0 chr4 26086880 26087018 -176241329 + L2 LINE L2 722 874 -2440 827 285 135 92 chr4 26087514 26088774 -176239573 + L2 LINE L2 1940 3263 -50 230 335 86 29 chr4 26088787 26088996 -176239351 + MLT1L LTR MaLR 6 226 -389 634 70 0 0 chr4 26089029 26089115 -176239232 + AluJ/FRAM SINE Alu 221 306 -6 943 218 47 8 chr4 26089118 26089360 -176238987 + LTR16A1 LTR ERVL 207 457 0 414 57 0 0 chr4 26089640 26089693 -176238654 + (GGAA)n Simple_repeat Simple_repeat 4 56 0 2093 119 0 0 chr4 26089911 26090237 -176238110 + AluSx SINE Alu 1 326 0 1811 140 14 3 chr4 26090264 26090556 -176237791 + AluJo SINE Alu 1 295 -17 318 26 0 0 chr4 26090814 26090853 -176237494 + (CA)n Simple_repeat Simple_repeat 2 40 0 397 301 81 84 chr4 26091023 26091573 -176236774 + L1M3c LINE L1 1728 3899 -2949 2110 106 0 26 chr4 26091600 26091902 -176236445 - AluSx SINE Alu -18 294 1 421 270 123 19 chr4 26091904 26092115 -176236232 + HAL1b LINE L1 413 645 -703 610 333 81 59 chr4 26092158 26092237 -176236110 + L1M4c LINE L1 2053 2129 -4417 2093 130 0 0 chr4 26092237 26092536 -176235811 + AluSx SINE Alu 1 299 -13 610 333 81 59 chr4 26092536 26092552 -176235795 + L1M4c LINE L1 2129 2143 -4403 1770 174 3 10 chr4 26092552 26092863 -176235484 + AluJo SINE Alu 1 309 -3 610 333 81 59 chr4 26092863 26093310 -176235037 + L1M4c LINE L1 2143 2649 -3897 4182 194 13 20 chr4 26093328 26094072 -176234275 + L1P LINE L1 4263 5000 -1146 1775 177 0 10 chr4 26094072 26094377 -176233970 - AluJb SINE Alu -10 302 1 4182 194 13 20 chr4 26094377 26094629 -176233718 + L1P LINE L1 5000 5252 -894 226 296 11 23 chr4 26095580 26095668 -176232679 - L1M4b LINE L1 -6341 518 432 2269 94 7 0 chr4 26095816 26096124 -176232223 + AluSp SINE Alu 1 310 -3 953 283 123 29 chr4 26097115 26097848 -176230499 + L2 LINE L2 2500 3305 -8 1422 226 61 53 chr4 26098615 26099110 -176229237 + MLT1D LTR MaLR 1 418 -10 215 324 93 19 chr4 26100192 26100300 -176228047 + MIR SINE MIR 18 133 -75 206 239 0 15 chr4 26103107 26103174 -176225173 + (CA)n Simple_repeat Simple_repeat 1 66 0 2248 62 24 3 chr4 26103490 26103782 -176224565 + AluSp SINE Alu 2 299 -14 432 244 16 8 chr4 26104134 26104257 -176224090 + Charlie8 DNA MER1_type 46 169 -2248 2257 65 48 0 chr4 26104401 26104691 -176223656 + AluY SINE Alu 1 304 -7 2342 95 0 0 chr4 26106765 26107070 -176221277 + AluSq SINE Alu 1 305 -8 279 265 247 19 chr4 26107638 26107800 -176220547 + MIR SINE MIR 63 261 -1 21 36 0 0 chr4 26109903 26109931 -176218416 + GC_rich Low_complexity Low_complexity 1 28 0 2200 82 27 0 chr4 26110499 26110793 -176217554 - AluSp SINE Alu 0 313 12 262 208 13 26 chr4 26110809 26110886 -176217461 - L2 LINE L2 -301 2971 2896 387 276 24 0 chr4 26110981 26111108 -176217239 + MLT1K LTR MaLR 184 313 -275 323 279 253 13 chr4 26111675 26111829 -176216518 + L2 LINE L2 3123 3313 0 * 470 267 82 36 chr4 26111818 26112013 -176216334 - MIR SINE MIR -3 259 56 902 147 0 22 chr4 26112041 26112177 -176216170 + FLAM_C SINE Alu 1 133 0 1369 208 32 32 chr4 26112192 26112319 -176216028 + AluJo SINE Alu 1 127 -185 225 65 0 0 chr4 26112319 26112350 -176215997 + (TAGA)n Simple_repeat Simple_repeat 4 34 0 1369 208 32 32 chr4 26112350 26112530 -176215817 + AluJo SINE Alu 126 308 -4 2411 181 47 74 chr4 26112648 26113282 -176215065 - LTR34 LTR ERV1 -4 695 79 240 146 0 6 chr4 26113341 26113397 -176214950 + Alu SINE Alu 1 37 -265 246 0 29 0 chr4 26113445 26113479 -176214868 + AluY SINE Alu 18 52 -248 596 327 16 65 chr4 26113615 26113936 -176214411 - L2 LINE L2 -1 3271 2967 239 222 0 0 chr4 26114646 26114691 -176213656 + L2 LINE L2 3269 3313 0 210 171 0 24 chr4 26114697 26114738 -176213609 + (TGAA)n Simple_repeat Simple_repeat 4 43 0 203 273 36 0 chr4 26115980 26116035 -176212312 + MIR SINE MIR 81 137 -71 2277 93 3 7 chr4 26116998 26117308 -176211039 + AluSx SINE Alu 1 309 -3 429 203 203 0 chr4 26117474 26117602 -176210745 - MER5A DNA MER1_type -35 154 1 520 199 69 8 chr4 26117603 26117734 -176210613 + L2 LINE L2 2667 2805 -509 183 273 18 0 chr4 26119001 26119056 -176209291 - MIR SINE MIR -6 256 201 365 184 0 11 chr4 26119086 26119173 -176209174 + MLT1C LTR MaLR 34 119 -348 5216 69 24 22 chr4 26119173 26119430 -176208917 - L1P LINE L1 -1635 4511 4256 2278 72 3 3 chr4 26119430 26119723 -176208624 - AluY SINE Alu -14 297 5 5216 69 24 22 chr4 26119723 26120288 -176208059 - L1P LINE L1 -1890 4256 3687 1493 64 59 0 chr4 26120288 26120507 -176207840 + L1P3 LINE L1 5446 5677 -477 2068 137 0 19 chr4 26120507 26120644 -176207703 + AluSx SINE Alu 1 139 -173 2225 101 3 7 chr4 26120644 26120950 -176207397 + AluSp SINE Alu 1 305 -8 2068 137 0 19 chr4 26120950 26121127 -176207220 + AluSx SINE Alu 139 309 -3 817 225 67 10 chr4 26121129 26121338 -176207009 + MLT1C LTR MaLR 213 433 -34 407 277 54 8 chr4 26121367 26121497 -176206850 - MIR3 SINE MIR -62 146 11 2086 119 0 7 chr4 26122264 26122566 -176205781 - AluSx SINE Alu -12 300 1 843 124 31 0 chr4 26122865 26122994 -176205353 - FRAM SINE Alu -3 173 41 705 265 84 20 chr4 26123347 26123708 -176204639 + LTR16C LTR ERVL 61 491 0 414 328 0 6 chr4 26123759 26123939 -176204408 + (CA)n Simple_repeat Simple_repeat 1 179 0 674 298 113 16 chr4 26125265 26125644 -176202703 - L2 LINE L2 -4 3268 2853 298 269 77 0 chr4 26125836 26125940 -176202407 + MER5A DNA MER1_type 51 162 -27 1236 136 0 6 chr4 26126150 26126326 -176202021 + FAM SINE Alu 1 175 0 1841 138 36 13 chr4 26126389 26126505 -176201842 + AluSx SINE Alu 1 113 -199 219 36 0 0 chr4 26126505 26126533 -176201814 + (CAA)n Simple_repeat Simple_repeat 3 30 0 1841 138 36 13 chr4 26126533 26126721 -176201626 + AluSx SINE Alu 113 312 0 233 245 314 0 chr4 26126872 26126974 -176201373 + MIR SINE MIR 9 142 -120 227 256 58 58 chr4 26127334 26127399 -176200948 - MIR SINE MIR -79 129 62 1097 172 39 10 chr4 26127399 26127602 -176200745 - MER3 DNA MER1_type 0 209 1 436 261 7 12 chr4 26127611 26127739 -176200608 - MER5B DNA MER1_type 0 178 61 983 271 199 16 chr4 26128868 26129296 -176199051 - L2 LINE L2 0 3313 2808 355 363 39 11 chr4 26129371 26129553 -176198794 - MIR SINE MIR -68 194 8 2129 124 3 16 chr4 26129819 26130188 -176198159 + AluSq SINE Alu 1 313 0 2028 149 0 0 chr4 26130606 26130907 -176197440 - AluSx SINE Alu -11 301 1 1936 115 98 3 chr4 26130907 26131212 -176197135 - MER4B LTR ERV1 -245 365 32 2128 95 58 10 chr4 26131247 26131541 -176196806 - AluSc SINE Alu -1 308 1 2391 88 3 50 chr4 26131563 26131905 -176196442 - MER4B-int LTR ERV1 0 6758 6433 1643 115 0 0 chr4 26131903 26132121 -176196226 - AluSg/x SINE Alu -13 297 80 549 320 77 0 chr4 26132357 26132579 -176195768 - MIR SINE MIR -4 258 20 703 255 39 20 chr4 26133944 26134148 -176194199 + MIR SINE MIR 17 224 -38 295 253 0 71 chr4 26134227 26134326 -176194021 - MIR SINE MIR -65 197 106 438 319 158 27 chr4 26135078 26135413 -176192934 + L3 LINE CR1 1083 1461 -116 274 299 19 64 chr4 26136439 26136596 -176191751 - MIR SINE MIR -56 206 57 266 250 29 103 chr4 26137063 26137199 -176191148 - L2 LINE L2 0 3313 3188 553 301 121 0 chr4 26137455 26137661 -176190686 + L2 LINE L2 2840 3070 -243 1100 128 62 52 chr4 26137662 26137873 -176190474 + MER7A DNA MER2_type 1 211 -135 279 266 168 21 chr4 26138149 26138292 -176190055 + MIR3 SINE MIR 24 187 -21 471 154 273 0 chr4 26140800 26140910 -176187437 - Charlie4 DNA MER1_type 0 1961 1822 190 244 50 144 chr4 26141341 26141501 -176186846 - L2 LINE L2 -36 3277 3133 261 0 0 0 chr4 26141664 26141693 -176186654 + (CA)n Simple_repeat Simple_repeat 2 30 0 441 176 0 0 chr4 26141694 26141762 -176186585 + Tigger2 DNA MER2_type 2 69 -2649 * 2608 125 58 23 chr4 26141752 26141962 -176186385 + Tigger2 DNA MER2_type 2273 2474 -244 1861 145 3 7 chr4 26141962 26142258 -176186089 - AluJb SINE Alu -17 295 1 2608 125 58 23 chr4 26142258 26142478 -176185869 + Tigger2 DNA MER2_type 2474 2718 0 297 327 91 33 chr4 26142689 26142890 -176185457 + MIR SINE MIR 16 229 -33 334 288 36 9 chr4 26143098 26143209 -176185138 + MER103 DNA DNA 4 117 -49 189 245 0 0 chr4 26144072 26144121 -176184226 + GA-rich Low_complexity Low_complexity 4 52 0 437 288 139 53 chr4 26144635 26144972 -176183375 - L2 LINE L2 0 3313 2948 199 171 0 0 chr4 26145584 26145619 -176182728 + MIR SINE MIR 222 256 -6 331 234 39 94 chr4 26147053 26147181 -176181166 - L2 LINE L2 0 3313 3193 184 330 26 26 chr4 26147465 26147580 -176180767 + L3b LINE CR1 1109 1223 -360 180 282 295 0 chr4 26147700 26147778 -176180569 + MIR SINE MIR 48 148 -114 215 100 0 25 chr4 26147851 26147891 -176180456 + (CAT)n Simple_repeat Simple_repeat 3 41 0 318 274 81 24 chr4 26147977 26148101 -176180246 + MIR3 SINE MIR 13 143 -65 1216 199 246 40 chr4 26148133 26148514 -176179833 + MLT2B2 LTR ERVL 1 302 -213 252 0 0 0 chr4 26148514 26148542 -176179805 + (TC)n Simple_repeat Simple_repeat 2 29 0 * 258 32 0 0 chr4 26148541 26148572 -176179775 + (TG)n Simple_repeat Simple_repeat 2 32 0 1216 199 246 40 chr4 26148542 26148617 -176179730 + MLT2B2 LTR ERVL 302 515 0 2244 81 3 3 chr4 26149587 26149871 -176178476 - AluY SINE Alu -14 297 14 599 297 15 25 chr4 26149871 26150073 -176178274 + MIR SINE MIR 50 249 -13 552 30 0 0 chr4 26150400 26150466 -176177881 + LTR10D LTR ERV1 2 67 -446 350 340 45 13 chr4 26151713 26151869 -176176478 - MIR3 SINE MIR -18 190 30 2411 77 3 29 chr4 26151933 26152246 -176176101 - AluSq SINE Alu -8 305 1 1841 208 9 9 chr4 26152577 26152918 -176175429 - MER58B DNA MER1_type 0 341 1 1328 138 69 0 chr4 26155298 26155501 -176172846 - AluJb SINE Alu -10 302 86 412 291 43 7 chr4 26155951 26156092 -176172255 + MIR3 SINE MIR 1 146 -62 1712 175 27 0 chr4 26156104 26156396 -176171951 + AluJo SINE Alu 5 304 -8 394 203 0 0 chr4 26156612 26156681 -176171666 - L2 LINE L2 0 3313 3245 272 242 0 22 chr4 26158688 26158779 -176169568 + GA-rich Low_complexity Low_complexity 4 92 0 2806 161 21 0 chr4 26159422 26159844 -176168503 - MSTB1 LTR MaLR -1 431 1 193 229 0 66 chr4 26159893 26159954 -176168393 + L2 LINE L2 3175 3231 -82 749 281 113 0 chr4 26160013 26160244 -176168103 - MIR SINE MIR 0 262 6 425 275 84 39 chr4 26160294 26160472 -176167875 - MIR SINE MIR -71 191 6 24 32 0 0 chr4 26161059 26161090 -176167257 + AT_rich Low_complexity Low_complexity 1 31 0 716 323 30 4 chr4 26161889 26162124 -176166223 + MIR SINE MIR 13 253 -9 406 200 24 146 chr4 26162135 26162205 -176166142 - MIR SINE MIR -105 157 116 1998 83 0 93 chr4 26162205 26162547 -176165800 + AluSx SINE Alu 1 313 0 406 200 24 146 chr4 26162547 26162640 -176165707 - MIR SINE MIR -146 116 13 2151 109 7 3 chr4 26162956 26163259 -176165088 + AluSg SINE Alu 3 306 -4 458 243 0 122 chr4 26163751 26163899 -176164448 - MIR SINE MIR -70 138 9 501 263 193 29 chr4 26164622 26164895 -176163452 + MLT1L LTR MaLR 208 525 -90 1068 214 142 36 chr4 26164895 26165262 -176163085 - MLT1F1 LTR MaLR 0 567 82 1153 178 13 44 chr4 26165262 26165487 -176162860 - MER20 DNA MER1_type -1 218 1 1068 214 142 36 chr4 26165487 26165568 -176162779 - MLT1F1 LTR MaLR -485 82 11 347 266 11 0 chr4 26165578 26165672 -176162675 + MLT1L LTR MaLR 521 615 0 300 53 0 0 chr4 26165836 26165874 -176162473 + (CA)n Simple_repeat Simple_repeat 1 38 0 2478 89 0 0 chr4 26167147 26167451 -176160896 + AluSg SINE Alu 1 304 -6 2980 88 0 3 chr4 26168042 26168407 -176159940 - THE1B LTR MaLR 0 364 1 920 109 0 7 chr4 26168430 26168567 -176159780 - L1PB1 LINE L1 0 6151 6016 487 221 25 33 chr4 26168652 26168774 -176159573 + MIR SINE MIR 103 223 -39 584 179 38 0 chr4 26168825 26168931 -176159416 + L2 LINE L2 3183 3292 -21 339 296 65 41 chr4 26169664 26169833 -176158514 - MIR SINE MIR -12 250 78 440 282 62 44 chr4 26170844 26171071 -176157276 - MIR SINE MIR -12 250 20 286 213 74 65 chr4 26172330 26172438 -176155909 - MIR SINE MIR -139 123 15 181 208 181 0 chr4 26172481 26172553 -176155794 + MIR SINE MIR 140 224 -38 336 152 48 9 chr4 26173956 26174061 -176154286 + (TA)n Simple_repeat Simple_repeat 2 110 0 327 146 0 0 chr4 26174285 26174340 -176154007 + (TATATG)n Simple_repeat Simple_repeat 6 60 0 225 178 0 0 chr4 26174344 26174389 -176153958 - LTR66 LTR ERVL -171 439 395 233 108 0 242 chr4 26174394 26174514 -176153833 - L1MC4 LINE L1 -1339 6703 6613 * 267 290 0 11 chr4 26174422 26174515 -176153832 + L1MC4 LINE L1 6614 6705 -1337 728 169 7 0 chr4 26174515 26174651 -176153696 + MER53 DNA DNA 20 156 -33 271 227 248 21 chr4 26175014 26175155 -176153192 - MIR SINE MIR -32 230 58 287 268 108 76 chr4 26175499 26175656 -176152691 - MIR SINE MIR -95 167 6 943 273 56 4 chr4 26176550 26176799 -176151548 + MIR SINE MIR 1 262 0 238 118 0 0 chr4 26176845 26176879 -176151468 + MLT1I LTR MaLR 370 403 -6 26 0 0 0 chr4 26177624 26177650 -176150697 + AT_rich Low_complexity Low_complexity 1 26 0 387 0 0 0 chr4 26178620 26178663 -176149684 + (T)n Simple_repeat Simple_repeat 1 43 0 853 269 68 64 chr4 26178934 26179373 -176148974 + MLT1J LTR MaLR 17 457 -54 265 329 0 0 chr4 26179700 26179782 -176148565 - MIR SINE MIR -86 176 95 425 188 0 0 chr4 26179989 26180074 -176148273 - L1MA7 LINE L1 0 6291 6207 223 296 56 74 chr4 26180105 26180213 -176148134 + L2 LINE L2 3164 3269 -3 814 258 50 21 chr4 26182654 26182894 -176145453 - MIR SINE MIR -2 260 14 447 323 8 0 chr4 26182956 26183086 -176145261 + MER94 DNA DNA 3 133 -1 458 252 16 63 chr4 26183203 26183330 -176145017 - L2 LINE L2 -6 3266 3146 228 204 0 0 chr4 26183399 26183453 -176144894 - LTR66 LTR ERVL -159 451 398 * 232 143 0 0 chr4 26183421 26183463 -176144884 + LTR66 LTR ERVL 398 439 -171 424 289 46 23 chr4 26183578 26183764 -176144583 + MIR SINE MIR 2 185 -66 2253 104 3 0 chr4 26183826 26184115 -176144232 + AluSp SINE Alu 2 291 -22 216 345 24 12 chr4 26184429 26184513 -176143834 - MIR SINE MIR -72 136 52 935 264 37 0 chr4 26184855 26185071 -176143276 - MER58A DNA MER1_type 0 224 1 2168 138 0 0 chr4 26186304 26186615 -176141732 + AluSx SINE Alu 1 311 -1 313 319 64 11 chr4 26187090 26187184 -176141163 - MIR SINE MIR -58 150 52 405 341 122 33 chr4 26187352 26187872 -176140475 - L2 LINE L2 -44 3269 2714 1161 123 0 0 chr4 26187886 26188041 -176140306 - FRAM SINE Alu -23 153 1 994 308 87 26 chr4 26188041 26188548 -176139799 - L2 LINE L2 -593 2721 2184 604 239 6 31 chr4 26188576 26188739 -176139608 - L1ME LINE L1 -5865 205 47 1037 259 26 83 chr4 26188825 26189331 -176139016 + L1ME LINE L1 396 872 -5198 2148 43 0 8 chr4 26189381 26189636 -176138711 - AluY SINE Alu 0 311 59 1250 128 0 24 chr4 26190321 26190532 -176137815 - AluY SINE Alu -105 206 1 1865 87 0 21 chr4 26190537 26190779 -176137568 + AluY SINE Alu 53 289 -22 566 246 60 0 chr4 26190805 26190972 -176137375 + L1ME LINE L1 899 1075 -5008 297 274 48 24 chr4 26190990 26191114 -176137233 + MER65B LTR ERV1 1 127 -404 279 247 123 0 chr4 26191560 26191641 -176136706 - L2 LINE L2 -1154 2160 2070 653 264 107 19 chr4 26192787 26193126 -176135221 + L1ME1 LINE L1 5501 5864 -302 1427 208 69 58 chr4 26193365 26193726 -176134621 + MLT1A1 LTR MaLR 1 365 0 403 281 51 66 chr4 26194287 26194483 -176133864 + MER117 DNA MER1_type 1 193 -4 1272 159 27 36 chr4 26194725 26194945 -176133402 + MER20 DNA MER1_type 1 218 -1 464 269 130 6 chr4 26195748 26195925 -176132422 + MIR SINE MIR 45 241 -21 597 178 82 48 chr4 26196149 26196295 -176132052 - MIR SINE MIR -42 220 70 271 260 26 0 chr4 26196394 26196471 -176131876 - L2 LINE L2 -1 3312 3234 360 0 0 0 chr4 26196687 26196727 -176131620 + (A)n Simple_repeat Simple_repeat 1 40 0 272 181 19 124 chr4 26197399 26197504 -176130843 + MIR3 SINE MIR 111 204 -4 207 0 0 0 chr4 26198122 26198145 -176130202 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1632 169 17 17 chr4 26198196 26198498 -176129849 + AluJo SINE Alu 1 302 -10 589 268 38 34 chr4 26201724 26201933 -176126414 - MER63A DNA MER1_type 0 210 1 1567 108 90 25 chr4 26202415 26202692 -176125655 + LTR7 LTR ERV1 1 295 -155 189 196 0 0 chr4 26203207 26203258 -176125089 + CT-rich Low_complexity Low_complexity 1 51 0 405 0 0 0 chr4 26204083 26204128 -176124219 + (TGGA)n Simple_repeat Simple_repeat 1 45 0 233 341 0 0 chr4 26206416 26206507 -176121840 + (TA)n Simple_repeat Simple_repeat 2 92 0 282 337 0 0 chr4 26206513 26206602 -176121745 + MIR SINE MIR 174 262 0 243 288 17 0 chr4 26206625 26206684 -176121663 + L2 LINE L2 3250 3309 -4 259 331 0 57 chr4 26206709 26206833 -176121514 - MIR SINE MIR -126 136 20 231 209 0 0 chr4 26207385 26207428 -176120919 + L1MC3 LINE L1 7384 7426 -359 364 241 7 83 chr4 26211190 26211335 -176117012 - MIR SINE MIR -48 214 81 879 255 54 37 chr4 26211695 26211991 -176116356 - MER113 DNA MER1_type? -122 399 95 320 229 0 48 chr4 26211991 26212074 -176116273 - MER116 DNA Mariner -1 79 1 879 255 54 37 chr4 26212074 26212126 -176116221 - MER113 DNA MER1_type? -426 95 45 4380 57 2 2 chr4 26212497 26213022 -176115325 - L1PA8 LINE L1 0 6172 5648 2143 115 0 32 chr4 26213392 26213704 -176114643 + AluSx SINE Alu 1 302 -10 385 283 12 81 chr4 26213889 26214003 -176114344 + MIR3 SINE MIR 46 146 -62 545 244 71 36 chr4 26214003 26214171 -176114176 - MER5B DNA MER1_type 0 178 5 385 283 12 81 chr4 26214171 26214229 -176114118 + MIR3 SINE MIR 146 206 -2 574 235 117 31 chr4 26214395 26214557 -176113790 + MIR SINE MIR 15 190 -72 438 287 42 18 chr4 26215156 26215323 -176113024 + L1ME4a LINE L1 5951 6121 0 1539 98 5 0 chr4 26216103 26216307 -176112040 + L1PA13 LINE L1 5958 6162 -1 2129 207 14 7 chr4 26216307 26216737 -176111610 + L1M4 LINE L1 5324 5756 -422 423 237 123 9 chr4 26217275 26217389 -176110958 - L2 LINE L2 -4 3309 3183 2111 127 0 0 chr4 26219788 26220098 -176108249 + AluSx SINE Alu 1 310 0 14460 91 10 8 chr4 26220413 26222440 -176105907 + HERVH LTR ERV1 958 2987 -4726 816 145 41 0 chr4 26222434 26222579 -176105768 + HERVH LTR ERV1 3140 3290 -4423 * 950 137 0 0 chr4 26222578 26222717 -176105630 + HERVH LTR ERV1 3500 3638 -4075 * 1224 150 0 1 chr4 26222707 26223068 -176105279 + HERVH LTR ERV1 4744 5149 -2564 1194 118 88 10 chr4 26223069 26223273 -176105074 + HERVH LTR ERV1 5600 5819 -1894 * 2620 71 48 13 chr4 26223271 26223650 -176104697 + HERVH LTR ERV1 7322 7713 0 1806 100 43 9 chr4 26223650 26224038 -176104309 + LTR7 LTR ERV1 1 448 -2 340 325 59 13 chr4 26225151 26225428 -176102919 + L2 LINE L2 2743 3031 -241 196 295 164 0 chr4 26225552 26225613 -176102734 + L2 LINE L2 3212 3282 -31 561 303 87 30 chr4 26225868 26225957 -176102390 - MIR SINE MIR -10 252 169 1062 240 90 90 chr4 26225957 26226512 -176101835 + MLT1H1 LTR MaLR 1 555 0 561 303 87 30 chr4 26226512 26226653 -176101694 - MIR SINE MIR -93 169 9 799 296 103 5 chr4 26227050 26227418 -176100929 + L2 LINE L2 2910 3313 0 23 0 0 0 chr4 26227588 26227611 -176100736 + AT_rich Low_complexity Low_complexity 1 23 0 1860 60 0 0 chr4 26227611 26227828 -176100519 - L1PA8 LINE L1 -17 6155 5939 202 27 0 54 chr4 26227937 26227974 -176100373 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 932 155 0 0 chr4 26227976 26228105 -176100242 - FLAM_C SINE Alu -4 129 1 252 344 0 11 chr4 26228247 26228337 -176100010 + L2 LINE L2 3224 3312 -1 246 311 30 19 chr4 26228575 26228704 -176099643 + MIR SINE MIR 20 150 -62 2179 117 0 7 chr4 26228787 26229086 -176099261 + AluSx SINE Alu 1 297 -15 26 64 0 0 chr4 26229150 26229197 -176099150 + AT_rich Low_complexity Low_complexity 1 47 0 2040 141 0 3 chr4 26229479 26229792 -176098555 + AluSx SINE Alu 1 312 0 613 171 31 194 chr4 26229829 26230051 -176098296 - MER5A DNA MER1_type 0 189 4 266 192 269 13 chr4 26230061 26230139 -176098208 - MIR SINE MIR -55 207 110 222 325 0 24 chr4 26230150 26230233 -176098114 + MIR SINE MIR 54 134 -128 198 280 0 0 chr4 26230959 26231009 -176097338 + MIR SINE MIR 201 250 -12 277 335 114 44 chr4 26231028 26231255 -176097092 - MIR SINE MIR -19 243 1 23 0 0 0 chr4 26231714 26231737 -176096610 + AT_rich Low_complexity Low_complexity 1 23 0 268 250 188 46 chr4 26232241 26232609 -176095738 - L1ME4a LINE L1 -3 6118 5699 762 169 0 24 chr4 26232615 26232739 -176095608 + FLAM_A SINE Alu 7 127 -15 33 0 0 0 chr4 26232727 26232760 -176095587 + AT_rich Low_complexity Low_complexity 1 33 0 * 413 294 85 13 chr4 26232760 26232913 -176095434 - L1ME4a LINE L1 -404 5717 5554 377 280 88 57 chr4 26233150 26233343 -176095004 - L2 LINE L2 0 3272 3074 357 257 62 69 chr4 26233452 26233596 -176094751 - MIR SINE MIR -57 205 63 1081 198 120 3 chr4 26234737 26235020 -176093327 - L1MB2 LINE L1 -8 6163 5848 189 0 0 0 chr4 26235020 26235041 -176093306 + (TG)n Simple_repeat Simple_repeat 2 22 0 * 207 0 0 0 chr4 26235040 26235063 -176093284 + (TA)n Simple_repeat Simple_repeat 1 23 0 261 0 0 0 chr4 26235170 26235199 -176093148 + (CA)n Simple_repeat Simple_repeat 2 30 0 315 67 0 0 chr4 26235199 26235244 -176093103 - L1MB2 LINE L1 -350 5833 5789 2320 82 3 0 chr4 26235663 26235969 -176092378 - AluY SINE Alu -4 307 1 207 167 0 0 chr4 26237138 26237180 -176091167 + (TA)n Simple_repeat Simple_repeat 1 42 0 631 324 83 25 chr4 26237303 26237701 -176090646 - L2 LINE L2 -1 3312 2892 340 258 108 0 chr4 26237710 26237803 -176090544 + L2 LINE L2 3204 3306 -7 225 355 19 9 chr4 26237823 26237930 -176090417 - L2 LINE L2 -425 2889 2782 213 376 55 9 chr4 26238027 26238136 -176090211 + L2 LINE L2 3154 3267 -5 454 198 4 203 chr4 26238143 26238370 -176089977 - MIR SINE MIR -15 247 66 1059 215 30 116 chr4 26239168 26239564 -176088783 + MLT1A1 LTR MaLR 4 365 0 14258 195 57 9 chr4 26239687 26241438 -176086909 - L1PB1 LINE L1 0 6867 5201 186 71 0 0 chr4 26241438 26241466 -176086881 + (TTTAG)n Simple_repeat Simple_repeat 3 30 0 14258 195 57 9 chr4 26241466 26246154 -176082193 - L1PB1 LINE L1 -1666 5201 105 505 118 26 0 chr4 26246157 26246233 -176082114 - AluS SINE Alu -231 82 5 180 287 356 17 chr4 26246467 26246641 -176081706 - MIR SINE MIR -1 261 29 1679 177 9 58 chr4 26246780 26246930 -176081417 + AluJb SINE Alu 1 128 -184 1455 173 0 4 chr4 26246930 26247179 -176081168 + AluJb SINE Alu 51 298 -14 1679 177 9 58 chr4 26247179 26247356 -176080991 + AluJb SINE Alu 128 312 0 182 121 61 0 chr4 26248779 26248812 -176079535 - L2 LINE L2 -94 3219 3185 212 280 178 8 chr4 26249527 26249645 -176078702 + MIR SINE MIR 120 257 -5 1351 197 85 61 chr4 26249847 26250340 -176078007 - MLT1D LTR MaLR 0 505 1 2332 81 13 3 chr4 26250537 26250844 -176077503 + AluY SINE Alu 1 310 -1 2394 96 0 0 chr4 26251847 26252150 -176076197 + AluSx SINE Alu 1 303 -9 288 354 16 16 chr4 26252652 26252779 -176075568 - MIR SINE MIR -24 238 112 493 283 68 34 chr4 26252877 26253114 -176075233 + LTR16C LTR ERVL 134 378 -113 335 343 10 0 chr4 26253222 26253321 -176075026 - MIR SINE MIR -162 100 1 2174 132 36 36 chr4 26253535 26253898 -176074449 + THE1B LTR MaLR 2 364 0 878 253 71 4 chr4 26253946 26254171 -176074176 - MIR SINE MIR -3 259 20 841 209 84 14 chr4 26254185 26254400 -176073947 - MIR SINE MIR -21 241 12 262 345 195 6 chr4 26254445 26254793 -176073554 - L3 LINE CR1 -203 1374 961 243 345 134 21 chr4 26255026 26255168 -176073179 - L2 LINE L2 -5 3267 3110 1581 282 133 13 chr4 26255173 26255442 -176072905 + L2 LINE L2 2090 2325 -989 1837 200 65 16 chr4 26255442 26255887 -176072460 + MLT1C LTR MaLR 1 467 0 1581 282 133 13 chr4 26255887 26256326 -176072021 + L2 LINE L2 2325 2883 -431 447 287 121 27 chr4 26256355 26256578 -176071769 + L2 LINE L2 3067 3310 -3 203 216 0 59 chr4 26256656 26256707 -176071640 + MIR SINE MIR 123 170 -92 189 196 0 0 chr4 26257407 26257458 -176070889 + CT-rich Low_complexity Low_complexity 1 51 0 405 0 0 0 chr4 26258283 26258328 -176070019 + (TGGA)n Simple_repeat Simple_repeat 1 45 0 233 341 0 0 chr4 26260616 26260707 -176067640 + (TA)n Simple_repeat Simple_repeat 2 92 0 289 337 0 0 chr4 26260713 26260802 -176067545 + MIR SINE MIR 174 262 0 245 288 30 0 chr4 26260818 26260884 -176067463 + L2 LINE L2 3242 3309 -4 * 271 305 3 90 chr4 26260882 26261048 -176067299 - MIR SINE MIR -71 137 4 374 241 7 83 chr4 26262958 26263103 -176065244 - MIR SINE MIR -48 214 81 795 255 43 14 chr4 26263463 26263745 -176064602 - MER113 DNA MER1_type? -122 399 110 284 229 0 48 chr4 26263758 26263841 -176064506 - MER116 DNA Mariner -1 79 1 4117 55 2 2 chr4 26264264 26264789 -176063558 - L1PA8 LINE L1 0 6172 5648 2149 115 0 32 chr4 26265159 26265471 -176062876 + AluSx SINE Alu 1 302 -10 397 283 12 81 chr4 26265656 26265770 -176062577 + MIR3 SINE MIR 46 146 -62 478 244 71 36 chr4 26265770 26265938 -176062409 - MER5B DNA MER1_type 0 178 5 397 283 12 81 chr4 26265938 26265996 -176062351 + MIR3 SINE MIR 146 206 -2 579 235 117 31 chr4 26266162 26266324 -176062023 + MIR SINE MIR 15 190 -72 363 285 42 18 chr4 26266925 26267090 -176061257 + L1ME4a LINE L1 5953 6121 0 1434 98 5 0 chr4 26267870 26268074 -176060273 + L1PA13 LINE L1 5958 6162 -1 1934 207 14 7 chr4 26268074 26268504 -176059843 + L1M4 LINE L1 5324 5756 -422 429 237 123 9 chr4 26269042 26269156 -176059191 - L2 LINE L2 -4 3309 3183 2121 127 0 0 chr4 26271555 26271865 -176056482 + AluSx SINE Alu 1 310 0 529 248 128 78 chr4 26272579 26272724 -176055623 + L1ME4a LINE L1 5689 5825 -296 2056 105 46 8 chr4 26272724 26273075 -176055272 + L1MA4A LINE L1 5940 6303 0 529 248 128 78 chr4 26273075 26273279 -176055068 + L1ME4a LINE L1 5825 6068 -53 2223 97 10 0 chr4 26273279 26273577 -176054770 - AluSq SINE Alu -12 301 1 529 248 128 78 chr4 26273577 26273625 -176054722 + L1ME4a LINE L1 6068 6112 -9 556 336 162 42 chr4 26273714 26274825 -176053522 - L2 LINE L2 -202 3070 1824 28802 110 9 15 chr4 26276233 26280944 -176047403 + L1P3 LINE L1 748 5506 -955 1985 118 7 43 chr4 26280944 26281248 -176047099 + AluSc SINE Alu 1 293 -16 1279 60 0 22 chr4 26281248 26281268 -176047079 + (GAAA)n Simple_repeat Simple_repeat 1 199 0 1279 60 0 22 chr4 26281268 26281452 -176046895 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 6930 46 24 0 chr4 26281524 26282472 -176045875 + L1PA7 LINE L1 5176 6144 -10 28 29 0 0 chr4 26282616 26282651 -176045696 + AT_rich Low_complexity Low_complexity 1 35 0 738 279 62 12 chr4 26282858 26283098 -176045249 + MIR SINE MIR 11 262 0 218 300 89 0 chr4 26283224 26283314 -176045033 - MIR SINE MIR -56 206 109 23 33 0 0 chr4 26283864 26283894 -176044453 + AT_rich Low_complexity Low_complexity 1 30 0 305 191 36 91 chr4 26284140 26284250 -176044097 - L1ME4a LINE L1 -209 5912 5809 315 0 0 0 chr4 26286514 26286549 -176041798 + (CA)n Simple_repeat Simple_repeat 1 35 0 196 313 30 20 chr4 26287071 26287170 -176041177 - L2 LINE L2 -263 3009 2910 332 228 53 0 chr4 26287203 26287317 -176041030 + MER113 DNA MER1_type? 30 149 -372 859 164 0 0 chr4 26287338 26287466 -176040881 + FLAM_C SINE Alu 2 129 -14 474 318 89 4 chr4 26287575 26287811 -176040536 + MER113 DNA MER1_type? 262 517 -4 1025 153 11 23 chr4 26288204 26288380 -176039967 - MER104 DNA MER2_type -4 176 3 375 291 87 8 chr4 26288521 26288648 -176039699 + MIR SINE MIR 1 137 -125 392 289 35 35 chr4 26289194 26289384 -176038963 - MIR SINE MIR -69 139 2 304 302 7 50 chr4 26290538 26290677 -176037670 + L1ME LINE L1 5299 5431 -731 1271 224 58 52 chr4 26290872 26291202 -176037145 + MLT1J LTR MaLR 22 353 -158 339 266 13 76 chr4 26291419 26291577 -176036770 + MLT1F LTR MaLR 40 187 -355 1434 269 87 78 chr4 26291898 26292836 -176035511 - L1MEd LINE L1 -5169 950 4 23 0 0 0 chr4 26293142 26293165 -176035182 + AT_rich Low_complexity Low_complexity 1 23 0 2199 110 14 3 chr4 26293292 26293584 -176034763 - AluSx SINE Alu -15 297 3 3052 107 18 31 chr4 26293648 26294098 -176034249 + MLT2A1 LTR ERVL 1 444 0 201 228 88 0 chr4 26294207 26294264 -176034083 + MIR SINE MIR 176 237 -25 238 208 0 0 chr4 26294272 26294320 -176034027 + (ATG)n Simple_repeat Simple_repeat 2 49 0 2672 49 0 0 chr4 26294511 26294818 -176033529 - AluY SINE Alu -4 307 1 358 282 81 20 chr4 26295038 26295187 -176033160 - MIR SINE MIR -1 261 104 545 242 79 24 chr4 26295217 26295382 -176032965 + MIR SINE MIR 89 262 0 466 209 181 0 chr4 26295374 26295479 -176032868 - MIR SINE MIR -107 155 32 * 476 291 74 30 chr4 26295885 26296115 -176032232 - MIR SINE MIR 0 262 23 235 255 0 0 chr4 26296312 26296359 -176031988 - L2 LINE L2 -18 3254 3208 * 468 317 0 0 chr4 26296355 26296478 -176031869 + L2 LINE L2 3150 3272 0 451 329 66 0 chr4 26296491 26296677 -176031670 - MIR SINE MIR -64 198 3 185 330 230 0 chr4 26296972 26297072 -176031275 - L3 LINE CR1 -2 1575 1453 2221 99 0 3 chr4 26297482 26297804 -176030543 + AluSg SINE Alu 1 321 0 336 167 19 0 chr4 26298217 26298271 -176030076 - Charlie8 DNA MER1_type -2238 179 125 350 338 39 45 chr4 26298408 26298588 -176029759 + MIR SINE MIR 25 196 -65 207 157 39 0 chr4 26298625 26298676 -176029671 + A-rich Low_complexity Low_complexity 2 54 0 400 216 0 16 chr4 26299359 26299484 -176028863 + CT-rich Low_complexity Low_complexity 2 124 0 652 252 0 0 chr4 26301220 26301359 -176026988 + MIR SINE MIR 112 250 -12 642 245 80 51 chr4 26301480 26301928 -176026419 + L1MC5 LINE L1 7259 7638 -323 793 281 160 41 chr4 26301931 26302419 -176025928 + MLT1F1 LTR MaLR 14 559 -8 464 254 78 19 chr4 26302430 26302635 -176025712 + L1MC5 LINE L1 7709 7925 -36 286 304 78 9 chr4 26302819 26302934 -176025413 + MIR SINE MIR 17 139 -123 192 257 0 0 chr4 26303784 26303854 -176024493 + (CATATA)n Simple_repeat Simple_repeat 3 72 0 27 0 0 0 chr4 26303974 26304001 -176024346 + AT_rich Low_complexity Low_complexity 1 27 0 2260 145 33 34 chr4 26304004 26304523 -176023824 + MLT2A2 LTR ERVL 1 517 -37 335 117 67 192 chr4 26304533 26304653 -176023694 + MER103 DNA DNA 15 119 -47 5810 123 13 2 chr4 26304846 26305687 -176022660 - L1MC1 LINE L1 0 6333 5484 1523 212 17 38 chr4 26305792 26305973 -176022374 + MER58B DNA MER1_type 1 173 -2247 2144 107 7 7 chr4 26305973 26306281 -176022066 - AluSq SINE Alu -5 308 1 1523 212 17 38 chr4 26306281 26306444 -176021903 + MER58B DNA MER1_type 173 338 -3 509 291 128 26 chr4 26307339 26307566 -176020781 - MIR SINE MIR -12 250 1 363 210 340 0 chr4 26307938 26308038 -176020309 - MER94 DNA DNA 0 134 1 549 246 34 17 chr4 26308041 26308216 -176020131 - MER5B DNA MER1_type 0 178 1 534 178 149 136 chr4 26308298 26308408 -176019939 + MLT1J LTR MaLR 214 321 -190 2230 129 7 0 chr4 26308408 26308717 -176019630 + AluSx SINE Alu 1 311 -1 534 178 149 136 chr4 26308717 26308848 -176019499 + MLT1J LTR MaLR 321 458 -53 226 381 79 62 chr4 26309313 26309767 -176018580 - L2 LINE L2 -2 3270 2809 2284 98 3 0 chr4 26310249 26310544 -176017803 + AluSx SINE Alu 1 296 -16 252 250 0 26 chr4 26310604 26310680 -176017667 + GA-rich Low_complexity Low_complexity 3 76 0 537 317 40 18 chr4 26311028 26311266 -176017081 + L1ME4a LINE L1 5653 5898 -223 37 69 0 0 chr4 26311498 26311570 -176016777 + AT_rich Low_complexity Low_complexity 1 72 0 195 278 96 35 chr4 26311651 26311766 -176016581 + MIR SINE MIR 88 209 -53 315 303 10 40 chr4 26311901 26312000 -176016347 - L2 LINE L2 -12 3260 3165 187 312 153 19 chr4 26312082 26312239 -176016108 + MIR SINE MIR 83 260 -2 270 0 0 0 chr4 26312853 26312883 -176015464 + (TG)n Simple_repeat Simple_repeat 2 31 0 1989 200 19 6 chr4 26314274 26314634 -176013713 - MLT1A1 LTR MaLR 0 365 1 715 150 20 34 chr4 26314655 26314802 -176013545 + MER53 DNA DNA 15 159 -30 2432 50 7 3 chr4 26314814 26315111 -176013236 - AluY SINE Alu -13 298 1 576 245 39 52 chr4 26315321 26315554 -176012793 - MER113 DNA MER1_type? -288 233 4 1303 175 8 51 chr4 26315565 26315799 -176012548 + MER58A DNA MER1_type 1 224 0 21 0 0 0 chr4 26316466 26316487 -176011860 + AT_rich Low_complexity Low_complexity 1 21 0 2650 45 0 0 chr4 26317764 26318075 -176010272 - AluY SINE Alu 0 311 1 22 0 0 0 chr4 26318879 26318901 -176009446 + AT_rich Low_complexity Low_complexity 1 22 0 224 284 74 53 chr4 26320474 26320569 -176007778 - MIR SINE MIR -70 192 96 1530 172 4 0 chr4 26320772 26321028 -176007319 - AluJb SINE Alu -3 309 53 691 160 141 113 chr4 26321161 26321329 -176007018 + MER20 DNA MER1_type 1 178 -41 1725 151 10 51 chr4 26321329 26321641 -176006706 + AluJo SINE Alu 1 299 -13 691 160 141 113 chr4 26321641 26321685 -176006662 + MER20 DNA MER1_type 178 219 0 230 211 14 42 chr4 26321837 26321908 -176006439 + CT-rich Low_complexity Low_complexity 2 70 0 232 331 65 24 chr4 26321955 26322124 -176006223 - MIR SINE MIR -66 196 21 232 297 144 82 chr4 26322807 26323152 -176005195 - L2 LINE L2 -17 3255 2886 2262 104 10 0 chr4 26323152 26323451 -176004896 - AluSx SINE Alu -10 302 1 675 254 77 9 chr4 26323610 26323752 -176004595 + MER112 DNA MER1_type 8 172 -88 2256 56 3 14 chr4 26323752 26324039 -176004308 - AluY SINE Alu -5 306 23 675 254 77 9 chr4 26324039 26324116 -176004231 + MER112 DNA MER1_type 172 242 -18 2191 107 0 22 chr4 26324336 26324655 -176003692 + AluSx SINE Alu 1 312 0 411 370 40 32 chr4 26324750 26325153 -176003194 - L2 LINE L2 -862 2452 2047 346 208 13 26 chr4 26325244 26325321 -176003026 + L2 LINE L2 3238 3313 0 255 302 228 31 chr4 26325339 26325790 -176002557 - L2 LINE L2 -1294 2020 1481 535 261 149 64 chr4 26328825 26329200 -175999147 + L2 LINE L2 2866 3272 0 418 309 11 25 chr4 26329198 26329383 -175998964 - MIR SINE MIR -65 143 17 * 993 200 68 9 chr4 26329642 26329862 -175998485 + MER96B DNA MER1_type? 5 237 -180 248 320 172 36 chr4 26330821 26331095 -175997252 - L2 LINE L2 -246 3067 2832 396 0 0 0 chr4 26331095 26331139 -175997208 + (TTG)n Simple_repeat Simple_repeat 2 45 0 248 320 172 36 chr4 26331139 26331160 -175997187 - L2 LINE L2 -481 2832 2815 1452 104 92 126 chr4 26331160 26331477 -175996870 - AluSg1 SINE Alu -3 306 1 248 320 172 36 chr4 26331477 26331792 -175996555 - L2 LINE L2 -498 2815 2371 280 138 181 11 chr4 26332452 26332546 -175995801 - Charlie7 DNA MER1_type -69 2543 2434 231 158 0 0 chr4 26333780 26333818 -175994529 + L2 LINE L2 3268 3305 -8 2067 145 7 0 chr4 26334020 26334330 -175994017 + AluSx SINE Alu 1 312 0 436 194 84 105 chr4 26334341 26334532 -175993815 + Charlie8 DNA MER1_type 90 276 -2141 438 151 66 13 chr4 26335151 26335303 -175993044 + GA-rich Low_complexity Low_complexity 3 162 0 26 0 0 0 chr4 26336755 26336781 -175991566 + AT_rich Low_complexity Low_complexity 1 26 0 2170 115 0 16 chr4 26337042 26337354 -175990993 - AluSg SINE Alu -3 307 1 1806 134 29 11 chr4 26337526 26337833 -175990514 - AluSx SINE Alu 0 312 1 34 0 0 0 chr4 26337936 26337970 -175990377 + AT_rich Low_complexity Low_complexity 1 34 0 1839 151 26 3 chr4 26338278 26338583 -175989764 + AluJb SINE Alu 1 312 0 2120 131 7 0 chr4 26339286 26339592 -175988755 + AluSx SINE Alu 1 308 -4 1467 117 15 38 chr4 26339705 26339969 -175988378 - L1M3 LINE L1 -814 5520 5263 2274 95 7 10 chr4 26340092 26340398 -175987949 - AluSx SINE Alu -5 307 3 226 189 94 0 chr4 26391879 26391932 -175936415 - MER112 DNA MER1_type -185 75 18 2110 121 0 32 chr4 26391943 26392258 -175936089 + AluSx SINE Alu 1 305 -7 1732 104 0 21 chr4 26392666 26392907 -175935440 + AluSg/x SINE Alu 68 303 -7 2294 84 3 10 chr4 26395052 26395348 -175932999 + AluSp SINE Alu 1 294 -19 1154 130 97 0 chr4 26395453 26395638 -175932709 - AluJb SINE Alu -109 203 1 901 275 89 48 chr4 26395940 26396327 -175932020 + L2 LINE L2 2182 2589 -725 2152 189 29 0 chr4 26396327 26396676 -175931671 - MLT1A1 LTR MaLR -4 361 3 901 275 89 48 chr4 26396676 26396702 -175931645 + L2 LINE L2 2589 2612 -702 654 148 0 0 chr4 26396804 26396905 -175931442 + AluSp/q SINE Alu 210 310 -3 338 291 59 35 chr4 26396972 26397175 -175931172 + L1MC4a LINE L1 5191 5398 -748 241 338 20 27 chr4 26397198 26397346 -175931001 + L1MC4a LINE L1 5449 5595 -2213 400 237 51 74 chr4 26397395 26397480 -175930867 + L1MC4a LINE L1 5701 5786 -2022 1797 222 37 6 chr4 26397480 26397832 -175930515 + MLT1A1 LTR MaLR 3 365 0 400 237 51 74 chr4 26397832 26397961 -175930386 + L1MC4a LINE L1 5786 5910 -1898 2210 126 0 0 chr4 26398136 26398438 -175929909 - AluSx SINE Alu -6 306 5 406 263 0 0 chr4 26398584 26398679 -175929668 - MER96B DNA MER1_type? 0 417 323 800 159 36 7 chr4 26398684 26398822 -175929525 - L1MC1 LINE L1 0 6333 6192 1565 142 19 15 chr4 26398825 26399085 -175929262 + MER1B DNA MER1_type 1 261 -78 315 115 39 0 chr4 26399106 26399158 -175929189 - L1MC1 LINE L1 -137 6196 6143 2521 59 10 3 chr4 26400367 26400673 -175927674 + AluY SINE Alu 1 308 -3 527 249 79 32 chr4 26400678 26400867 -175927480 - L1ME LINE L1 -309 5812 5615 1948 134 7 29 chr4 26400878 26401184 -175927163 + AluSx SINE Alu 2 300 -12 2167 82 0 0 chr4 26401327 26401597 -175926750 - AluSc SINE Alu -39 270 1 629 122 31 0 chr4 26401600 26401698 -175926649 - L1MC1 LINE L1 -191 6142 6042 493 313 79 28 chr4 26401700 26401914 -175926433 - HsTC2 DNA Tc2 -1197 701 477 295 253 13 0 chr4 26401897 26401972 -175926375 - HsTC2 DNA Tc2 -1598 300 225 * 223 392 54 0 chr4 26402191 26402321 -175926026 + L2 LINE L2 3136 3272 0 844 217 49 10 chr4 26402879 26403082 -175925265 - MLT1H1 LTR MaLR -7 548 338 341 143 0 63 chr4 26403187 26403250 -175925097 - MER103 DNA DNA -77 89 31 1278 237 176 15 chr4 26403988 26404464 -175923883 + MLT1H1 LTR MaLR 3 555 0 182 292 42 14 chr4 26404468 26404540 -175923807 - MIR SINE MIR -14 248 175 840 161 63 0 chr4 26404747 26404890 -175923457 - FRAM SINE Alu -10 156 5 2226 107 20 0 chr4 26404928 26405227 -175923120 + AluSg SINE Alu 1 305 -5 194 353 39 20 chr4 26405537 26405639 -175922708 + L2 LINE L2 3169 3272 0 311 275 48 85 chr4 26405739 26406175 -175922172 + L1M4 LINE L1 4487 4906 -1240 25 0 0 0 chr4 26406409 26406434 -175921913 + AT_rich Low_complexity Low_complexity 1 25 0 964 195 6 23 chr4 26407172 26407346 -175921001 + FAM SINE Alu 4 174 -1 2347 88 0 3 chr4 26407490 26407795 -175920552 - AluSg SINE Alu -6 304 1 385 258 105 21 chr4 26407804 26407994 -175920353 - L1MC5 LINE L1 -77 7884 7679 2394 190 169 43 chr4 26409248 26409653 -175918694 + L1MCa LINE L1 1172 1525 -4901 743 169 0 70 chr4 26409653 26409795 -175918552 + FLAM_C SINE Alu 2 133 0 2394 190 169 43 chr4 26409795 26410317 -175918030 + L1MCa LINE L1 1525 2216 -4210 5604 171 74 20 chr4 26410328 26410642 -175917705 + L1M4c LINE L1 29 325 -6059 1882 123 49 3 chr4 26410642 26410927 -175917420 - AluSx SINE Alu -14 298 1 5604 171 74 20 chr4 26410927 26411761 -175916586 + L1M4c LINE L1 325 1239 -5145 389 322 55 30 chr4 26411761 26411963 -175916384 + PABL_B LTR ERV1 1 207 -460 609 191 15 44 chr4 26412009 26412145 -175916202 + FLAM_C SINE Alu 2 133 0 4092 149 63 114 chr4 26412162 26413432 -175914915 - pTR5 LTR ERV1 0 2606 1524 535 94 0 0 chr4 26413432 26413496 -175914851 + AluSg/x SINE Alu 145 208 -102 27 0 0 0 chr4 26414593 26414620 -175913727 + AT_rich Low_complexity Low_complexity 1 27 0 25 0 0 28 chr4 26415254 26415273 -175913074 + AT_rich Low_complexity Low_complexity 1 20 -15 2349 97 7 0 chr4 26415273 26415582 -175912765 + AluSp SINE Alu 1 311 -2 25 0 0 28 chr4 26415582 26415598 -175912749 + AT_rich Low_complexity Low_complexity 20 35 0 2080 104 0 57 chr4 26415724 26416041 -175912306 + AluSx SINE Alu 1 299 -13 2083 75 0 0 chr4 26416169 26416422 -175911925 + AluY SINE Alu 1 253 -58 911 189 24 24 chr4 26416543 26416712 -175911635 + FRAM SINE Alu 1 161 -15 403 245 93 26 chr4 26416750 26416901 -175911446 + MIR SINE MIR 21 181 -81 1507 238 96 22 chr4 26418358 26418668 -175909679 - MER119 DNA MER1_type -2 581 226 2440 69 3 10 chr4 26418668 26418971 -175909376 - AluY SINE Alu -10 301 1 1507 238 96 22 chr4 26418971 26419110 -175909237 - MER119 DNA MER1_type -357 226 99 2141 145 0 0 chr4 26419827 26420138 -175908209 - AluSq SINE Alu -2 311 1 477 203 59 8 chr4 26420829 26420947 -175907400 - L2 LINE L2 0 3313 3190 1927 137 3 58 chr4 26421009 26421337 -175907010 + AluSx SINE Alu 1 310 -2 588 229 86 0 chr4 26421632 26421772 -175906575 + MER96 DNA MER1_type? 24 175 0 343 143 17 12 chr4 26421902 26421972 -175906375 + AluJ/FLAM SINE Alu 1 60 -242 2298 96 3 0 chr4 26423548 26423849 -175904498 - AluSx SINE Alu -10 302 1 2158 130 0 0 chr4 26424377 26424684 -175903663 + AluSg SINE Alu 1 307 -3 404 145 0 13 chr4 26424684 26424760 -175903587 + (GGAA)n Simple_repeat Simple_repeat 1 75 0 417 293 209 5 chr4 26425124 26425339 -175903008 - MIR SINE MIR -2 260 2 191 270 95 32 chr4 26425489 26425552 -175902795 - MIR SINE MIR -187 75 9 815 275 83 45 chr4 26425571 26425872 -175902475 - L2 LINE L2 0 3313 2994 2163 100 4 0 chr4 26425872 26426151 -175902196 + AluSp SINE Alu 24 303 -10 815 275 83 45 chr4 26426151 26426224 -175902123 - L2 LINE L2 -319 2994 2925 545 238 169 43 chr4 26426625 26426856 -175901491 + LTR16A LTR ERVL 57 316 -134 * 1071 253 130 93 chr4 26426853 26427414 -175900933 - MER21B LTR ERV1 -149 714 133 466 305 26 13 chr4 26427677 26427828 -175900519 + LTR16A LTR ERVL 292 444 -6 523 171 191 26 chr4 26427835 26427987 -175900360 + HERV16 LTR ERVL 2 178 -4818 2091 115 24 0 chr4 26428129 26428417 -175899930 - AluSx SINE Alu -17 295 1 358 300 7 47 chr4 26429786 26429936 -175898411 + MIR SINE MIR 36 179 -83 486 268 70 6 chr4 26430100 26430260 -175898087 + MIR SINE MIR 19 189 -62 2328 82 7 0 chr4 26431539 26431833 -175896514 - AluSg SINE Alu -14 296 1 457 248 57 28 chr4 26431851 26431992 -175896355 + MIR SINE MIR 7 151 -111 272 211 14 14 chr4 26432201 26432272 -175896075 + (CACG)n Simple_repeat Simple_repeat 3 73 0 331 286 171 88 chr4 26432492 26433047 -175895300 - L1M2 LINE L1 -5532 1317 717 180 111 0 0 chr4 26435945 26435972 -175892375 + (GGAGAA)n Simple_repeat Simple_repeat 2 28 0 254 185 93 0 chr4 26436797 26436851 -175891496 - L1MC/D LINE L1 -2020 5788 5730 323 271 101 0 chr4 26436855 26436994 -175891353 - L1MC/D LINE L1 -488 5633 5523 713 271 55 6 chr4 26438367 26438548 -175889799 + HERV16 LTR ERVL 535 724 -4272 2763 88 3 3 chr4 26438862 26439226 -175889121 + THE1B LTR MaLR 1 364 0 2013 297 30 35 chr4 26439259 26439327 -175889020 + HERV16 LTR ERVL 848 915 -4081 2548 79 3 0 chr4 26439327 26439632 -175888715 - AluSp SINE Alu -7 306 1 2013 297 30 35 chr4 26439632 26440920 -175887427 + HERV16 LTR ERVL 915 2269 -2727 3544 236 33 32 chr4 26440949 26441589 -175886758 + L1MCb LINE L1 1 644 -5401 1803 132 9 69 chr4 26441589 26441907 -175886440 + AluJb SINE Alu 1 299 -13 3544 236 33 32 chr4 26441907 26442240 -175886107 + L1MCb LINE L1 644 975 -5070 465 190 35 17 chr4 26442341 26442515 -175885832 + (TGGA)n Simple_repeat Simple_repeat 1 177 0 1620 192 3 7 chr4 26442611 26442897 -175885450 - AluJo SINE Alu -22 290 6 624 120 0 0 chr4 26443064 26443156 -175885191 + AluJb SINE Alu 42 133 -179 22 0 0 0 chr4 26443156 26443178 -175885169 + AT_rich Low_complexity Low_complexity 1 22 0 384 22 0 0 chr4 26443178 26443223 -175885124 + (CA)n Simple_repeat Simple_repeat 2 46 0 233 129 0 0 chr4 26443223 26443254 -175885093 + AluJb SINE Alu 131 161 -142 243 0 0 0 chr4 26443254 26443281 -175885066 + (CA)n Simple_repeat Simple_repeat 2 28 0 1102 158 0 0 chr4 26443281 26443439 -175884908 + AluJb SINE Alu 131 288 -24 245 294 12 0 chr4 26443892 26443977 -175884370 - MIR SINE MIR -31 231 146 1945 118 37 0 chr4 26443982 26444252 -175884095 - AluSx SINE Alu -26 286 7 413 281 29 1 chr4 26444269 26444386 -175883961 - MIR SINE MIR -62 146 37 187 235 49 37 chr4 26444440 26444521 -175883826 + L3 LINE CR1 1325 1406 -171 444 289 108 88 chr4 26444590 26445136 -175883211 + LTR67 LTR ERVL 1 557 0 258 168 0 0 chr4 26445316 26445368 -175882979 - MLT2D LTR ERVL -2 412 374 404 208 31 9 chr4 26445387 26445614 -175882733 + GA-rich Low_complexity Low_complexity 1 232 0 2097 158 22 25 chr4 26445617 26445984 -175882363 - MLT2D LTR ERVL -48 366 1 2073 148 0 0 chr4 26446266 26446571 -175881776 + AluSx SINE Alu 1 305 -7 2869 108 0 29 chr4 26446856 26447311 -175881036 + HERVH LTR ERV1 2554 2995 -4718 890 136 27 0 chr4 26447290 26447437 -175880910 + HERVH LTR ERV1 3140 3290 -4423 * 3378 122 8 2 chr4 26447427 26447926 -175880421 + HERVH LTR ERV1 3492 3993 -3720 4187 149 6 8 chr4 26447928 26448591 -175879756 + HERVH LTR ERV1 4488 5149 -2564 1405 127 19 0 chr4 26448592 26448805 -175879542 + HERVH LTR ERV1 5600 5816 -1897 2596 72 48 3 chr4 26448806 26449181 -175879166 + HERVH LTR ERV1 7322 7713 0 3456 67 0 7 chr4 26449181 26449632 -175878715 + LTR7 LTR ERV1 1 448 -2 1640 92 0 0 chr4 26449634 26449841 -175878506 - AluSg SINE Alu -103 207 1 410 243 0 27 chr4 26449846 26449957 -175878390 + MLT1K LTR MaLR 463 570 -18 493 130 26 0 chr4 26449959 26450036 -175878311 - AluJ/FRAM SINE Alu -10 302 224 1198 256 71 88 chr4 26450160 26450695 -175877652 + L2 LINE L2 2311 2853 -460 2211 90 4 0 chr4 26450695 26450974 -175877373 + AluSp SINE Alu 1 280 -33 300 27 0 0 chr4 26450977 26451014 -175877333 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 1198 256 71 88 chr4 26451014 26451489 -175876858 + L2 LINE L2 2855 3313 0 1622 134 19 7 chr4 26451720 26451989 -175876358 + L1MA5A LINE L1 6023 6294 -3 1571 149 127 0 chr4 26452662 26452930 -175875417 - AluSx SINE Alu 0 302 1 1816 126 0 0 chr4 26453904 26454151 -175874196 + AluSq SINE Alu 1 247 -66 1267 181 43 47 chr4 26454254 26454553 -175873794 + PABL_B LTR ERV1 370 667 0 981 247 28 48 chr4 26454570 26454861 -175873486 + PABL_B-int LTR ERV1 28 312 -6810 3527 62 18 0 chr4 26454861 26455296 -175873051 + MLT2A1 LTR ERVL 2 444 0 1853 268 64 13 chr4 26455416 26456168 -175872179 + PABL_B-int LTR ERV1 490 1369 -5753 * 7385 232 6 4 chr4 26456166 26457539 -175870808 + PABL_B-int LTR ERV1 2690 4065 -3057 3187 231 40 13 chr4 26457532 26458238 -175870109 + PABL_B-int LTR ERV1 4926 5650 -1472 * 14923 100 25 23 chr4 26458348 26460635 -175867712 - HERVH LTR ERV1 -5421 2292 1 3522 60 0 7 chr4 26460637 26461088 -175867259 - LTR7 LTR ERV1 -2 448 1 806 71 0 0 chr4 26461088 26461187 -175867160 + AluSg/x SINE Alu 203 301 -9 335 256 12 0 chr4 26461192 26461278 -175867069 - MLT1K LTR MaLR -128 460 374 476 305 52 6 chr4 26461374 26461548 -175866799 - MLT1K LTR MaLR -353 235 54 378 237 91 71 chr4 26461550 26461678 -175866669 + MIR SINE MIR 59 194 -68 1865 151 44 41 chr4 26461678 26462042 -175866305 - MLT1A1 LTR MaLR 0 365 1 378 237 91 71 chr4 26462042 26462111 -175866236 + MIR SINE MIR 194 260 -2 793 291 66 40 chr4 26462244 26463200 -175865147 - L1ME LINE L1 -676 5486 4498 * 1415 260 116 61 chr4 26463195 26464254 -175864093 - L1MC5 LINE L1 -286 7675 6554 2440 64 10 0 chr4 26464578 26464875 -175863472 - AluY SINE Alu -11 300 1 255 283 30 24 chr4 26464954 26465120 -175863227 + L1M4 LINE L1 4576 4742 -1404 699 268 47 19 chr4 26465142 26465517 -175862830 + L1MEc LINE L1 177 728 -5835 1392 211 58 30 chr4 26465517 26465881 -175862466 - MLT1A2 LTR MaLR 0 374 1 699 268 47 19 chr4 26465881 26466024 -175862323 + L1MEc LINE L1 728 866 -5697 3195 262 15 15 chr4 26466028 26466769 -175861578 + L1M3c LINE L1 13 753 -5388 1105 217 45 4 chr4 26466771 26466960 -175861387 + L1M3c LINE L1 837 1040 -5101 203 0 0 36 chr4 26466960 26466988 -175861359 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1105 217 45 4 chr4 26466988 26467042 -175861305 + L1M3c LINE L1 1040 1090 -5051 1506 101 19 0 chr4 26467095 26467302 -175861045 + Harlequin LTR ERV1 5883 6093 -803 890 205 103 13 chr4 26467637 26467871 -175860476 - LTR16C LTR ERVL -2 489 235 348 264 79 62 chr4 26468731 26468909 -175859438 - L2 LINE L2 -184 3129 2949 2313 202 66 0 chr4 26468968 26469438 -175858909 - MLT1D LTR MaLR -4 501 1 297 293 29 68 chr4 26469760 26470040 -175858307 + L1MC5 LINE L1 7639 7907 -54 266 199 78 21 chr4 26470124 26470247 -175858100 + L1ME LINE L1 5375 5513 -651 520 208 50 0 chr4 26470668 26470769 -175857578 + MER58A DNA MER1_type 1 106 -1 391 257 25 114 chr4 26471458 26471660 -175856687 - MIR SINE MIR -18 244 61 195 282 169 14 chr4 26471677 26471819 -175856528 - MIR SINE MIR -87 175 12 2225 101 17 0 chr4 26472264 26472562 -175855785 - AluSx SINE Alu -9 303 1 900 263 9 0 chr4 26472667 26472895 -175855452 - L1M1 LINE L1 -4465 3100 2871 1329 231 25 18 chr4 26472939 26473521 -175854826 + L1MEc LINE L1 2025 2614 -3768 * 5654 155 44 47 chr4 26473509 26473859 -175854488 + L1MA9 LINE L1 4266 4616 -1696 1821 142 72 31 chr4 26473859 26474219 -175854128 - THE1C LTR MaLR 0 375 1 5654 155 44 47 chr4 26474219 26474870 -175853477 + L1MA9 LINE L1 4616 5267 -1045 2020 150 32 41 chr4 26474870 26475210 -175853137 + MER1B DNA MER1_type 1 337 0 5654 155 44 47 chr4 26475210 26476254 -175852093 + L1MA9 LINE L1 5267 6311 -1 616 240 41 27 chr4 26476255 26476476 -175851871 + L1MEc LINE L1 811 1034 -5362 2105 137 7 3 chr4 26476571 26476871 -175851476 + AluSx SINE Alu 1 301 -11 490 273 13 32 chr4 26477485 26477639 -175850708 + MER115 DNA AcHobo 1 151 -542 231 278 19 0 chr4 26477708 26477762 -175850585 + Zaphod DNA AcHobo 3977 4031 0 325 293 98 0 chr4 26477928 26477952 -175850395 + L2 LINE L2 1778 1798 -1516 1837 180 26 0 chr4 26477952 26478291 -175850056 + MER7A DNA MER2_type 1 346 0 325 293 98 0 chr4 26478291 26478399 -175849948 + L2 LINE L2 1798 1923 -1391 1523 270 87 26 chr4 26478403 26478895 -175849452 - MLT1E2 LTR MaLR 0 626 105 205 125 125 0 chr4 26479053 26479093 -175849254 - MIR SINE MIR -114 148 104 211 318 116 16 chr4 26479150 26479279 -175849068 + MER5A DNA MER1_type 1 142 -47 23 0 0 0 chr4 26479441 26479464 -175848883 + AT_rich Low_complexity Low_complexity 1 23 0 225 283 83 42 chr4 26479939 26480059 -175848288 + MIR SINE MIR 73 197 -65 842 199 110 22 chr4 26480374 26480719 -175847628 - MLT1I LTR MaLR -3 406 1 305 201 8 149 chr4 26481781 26481881 -175846466 + L1MEd LINE L1 4 82 -6037 2686 25 0 29 chr4 26481881 26482197 -175846150 - AluY SINE Alu -3 308 2 305 201 8 149 chr4 26482197 26482230 -175846117 + L1MEd LINE L1 82 118 -6001 253 239 0 0 chr4 26482332 26482378 -175845969 + L1MEd LINE L1 311 356 -5763 2112 105 11 0 chr4 26482993 26483300 -175845047 + AluSx SINE Alu 1 310 0 232 294 109 8 chr4 26483356 26483475 -175844872 + MIR3 SINE MIR 75 205 -3 1430 168 117 7 chr4 26485251 26485525 -175842822 + 7SLRNA srpRNA srpRNA 2 305 -15 214 156 31 0 chr4 26485525 26485589 -175842758 + (TA)n Simple_repeat Simple_repeat 1 66 0 205 299 175 32 chr4 26486104 26486321 -175842026 - MIR SINE MIR -12 250 3 936 230 106 63 chr4 26486441 26486474 -175841873 - L1MC4a LINE L1 -1972 5836 5806 3837 137 73 21 chr4 26486474 26486556 -175841791 - L1PA15 LINE L1 -7 6158 6082 1845 125 17 21 chr4 26486556 26486843 -175841504 - AluSx SINE Alu -6 306 21 3837 137 73 21 chr4 26486843 26487473 -175840874 - L1PA15 LINE L1 -83 6082 5409 936 230 106 63 chr4 26487473 26487913 -175840434 - L1MC4a LINE L1 -2002 5806 5343 276 268 45 36 chr4 26487936 26488048 -175840299 - HsTC2 DNA Tc2 -1781 117 5 251 242 158 17 chr4 26488052 26488172 -175840175 - L1PA15 LINE L1 -801 5345 5209 215 170 21 0 chr4 26488471 26488518 -175839829 + (TA)n Simple_repeat Simple_repeat 2 49 0 717 236 27 0 chr4 26488819 26488967 -175839380 - MER5A DNA MER1_type -1 188 37 204 40 0 0 chr4 26489311 26489336 -175839011 + (T)n Simple_repeat Simple_repeat 1 25 0 1232 216 46 56 chr4 26489337 26489730 -175838617 - MLT1C LTR MaLR -45 422 34 222 333 111 22 chr4 26489796 26489976 -175838371 + MIR3 SINE MIR 6 201 -7 1476 239 75 41 chr4 26490463 26491024 -175837323 + HsTC2c DNA Tc2 104 683 -46 23 54 0 0 chr4 26493560 26493597 -175834750 + AT_rich Low_complexity Low_complexity 1 37 0 293 87 0 0 chr4 26494479 26494525 -175833822 - Alu SINE Alu -5 296 251 5364 135 99 44 chr4 26494723 26495648 -175832699 + Tigger3b DNA MER2_type 2 1006 -2022 2458 74 3 3 chr4 26495648 26495959 -175832388 - AluSp SINE Alu -1 312 2 5364 135 99 44 chr4 26495959 26496199 -175832148 + Tigger3b DNA MER2_type 1006 1231 0 24 53 0 0 chr4 26498279 26498317 -175830030 + AT_rich Low_complexity Low_complexity 1 38 0 1634 191 14 7 chr4 26499589 26499872 -175828475 - AluJb SINE Alu -27 285 1 1333 195 66 35 chr4 26503093 26503515 -175824832 - Tigger7 DNA MER2_type -1980 507 2 28 61 0 0 chr4 26505385 26505434 -175822913 + AT_rich Low_complexity Low_complexity 1 49 0 437 272 129 37 chr4 26507680 26507974 -175820373 + L1ME4a LINE L1 5534 5854 -267 362 301 0 0 chr4 26511942 26512035 -175816312 - MER58 DNA MER1_type -122 93 1 1768 129 10 54 chr4 26512608 26512903 -175815444 + AluJo SINE Alu 1 282 -30 26 0 0 0 chr4 26512926 26512952 -175815395 + AT_rich Low_complexity Low_complexity 1 26 0 201 39 0 0 chr4 26513022 26513048 -175815299 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 21 0 0 0 chr4 26514539 26514560 -175813787 + AT_rich Low_complexity Low_complexity 1 21 0 2407 81 0 7 chr4 26515878 26516188 -175812159 - AluY SINE Alu -3 308 1 490 366 148 16 chr4 26516666 26517152 -175811195 - L3 LINE CR1 -98 1479 930 325 226 165 23 chr4 26517643 26517658 -175810689 - L1MA10 LINE L1 -2 6332 6318 640 213 136 6 chr4 26517658 26517827 -175810520 - L1ME1 LINE L1 -5 6161 5971 763 213 124 16 chr4 26517828 26518086 -175810261 - L1ME1 LINE L1 -250 5916 5631 260 53 26 0 chr4 26519259 26519279 -175809068 + (CA)n Simple_repeat Simple_repeat 1 59 0 260 53 26 0 chr4 26519279 26519317 -175809030 + (CA)n Simple_repeat Simple_repeat 1 39 0 257 128 21 0 chr4 26519421 26519468 -175808879 + (CA)n Simple_repeat Simple_repeat 1 48 0 282 56 0 0 chr4 26519534 26519570 -175808777 + (CGG)n Simple_repeat Simple_repeat 2 37 0 21 57 0 0 chr4 26520209 26520244 -175808103 + GC_rich Low_complexity Low_complexity 1 35 0 291 177 0 0 chr4 26520852 26520914 -175807433 + (TG)n Simple_repeat Simple_repeat 1 62 0 329 264 42 139 chr4 26521007 26521223 -175807124 + L1M2 LINE L1 818 1012 -5837 435 63 0 0 chr4 26521894 26521957 -175806390 + (TG)n Simple_repeat Simple_repeat 2 64 0 677 196 53 151 chr4 26523921 26524207 -175804140 + PABL_B-int LTR ERV1 4787 5015 0 233 337 30 56 chr4 26524370 26524640 -175803707 - PABL_B LTR ERV1 -401 266 4 657 138 0 0 chr4 26524644 26524753 -175803594 + L1MB3 LINE L1 1233 1341 -5043 * 1791 166 18 21 chr4 26524750 26525225 -175803122 + L1MB3 LINE L1 5373 5851 -568 803 223 87 27 chr4 26525228 26525577 -175802770 - MSTD LTR MaLR 0 396 2 3081 138 16 30 chr4 26525577 26525808 -175802539 + L1MB3 LINE L1 5849 6082 -337 1523 128 0 17 chr4 26525808 26526042 -175802305 + MER30 DNA MER1_type 1 230 0 3081 138 16 30 chr4 26526042 26526381 -175801966 + L1MB3 LINE L1 6082 6411 -8 1948 298 38 47 chr4 26526405 26527165 -175801182 + HERV16 LTR ERVL 2300 3110 -2263 2523 68 0 0 chr4 26527165 26527475 -175800872 - AluY SINE Alu 0 311 2 1948 298 38 47 chr4 26527475 26527830 -175800517 + HERV16 LTR ERVL 3110 3467 -1906 546 302 40 20 chr4 26527970 26528172 -175800175 - MER63A DNA MER1_type -4 206 1 341 267 78 71 chr4 26528343 26528639 -175799708 + HERV16 LTR ERVL 3746 4043 -1721 402 363 0 0 chr4 26528913 26529073 -175799274 + HERV16 LTR ERVL 4671 4830 -824 2066 155 0 0 chr4 26529123 26529432 -175798915 - AluSc SINE Alu 0 309 1 312 252 21 49 chr4 26529537 26529680 -175798667 + HERV16 LTR ERVL 4534 4672 -324 1897 111 36 18 chr4 26530012 26530397 -175797950 + AluSp SINE Alu 1 390 0 1345 284 43 19 chr4 26530442 26530721 -175797626 + LTR16A LTR ERVL 19 313 -137 1915 107 21 7 chr4 26530721 26531001 -175797346 + AluSp SINE Alu 1 284 -29 1345 284 43 19 chr4 26531001 26531143 -175797204 + LTR16A LTR ERVL 313 450 0 2223 124 7 0 chr4 26531228 26531535 -175796812 + AluSx SINE Alu 1 309 -3 675 274 30 25 chr4 26531548 26531745 -175796602 - L2 LINE L2 -2 3311 3114 882 263 72 36 chr4 26531918 26532363 -175795984 - LTR16C LTR ERVL -30 461 1 235 220 34 0 chr4 26532368 26532427 -175795920 - MIR SINE MIR -65 197 137 811 252 49 56 chr4 26532460 26532928 -175795419 + MLT1K LTR MaLR 5 544 -44 345 289 18 35 chr4 26532938 26533052 -175795295 - MIR SINE MIR -150 112 1 2128 124 6 40 chr4 26533349 26533788 -175794559 + AluSx SINE Alu 1 428 0 717 53 0 0 chr4 26533788 26533882 -175794465 + (GGGAA)n Simple_repeat Simple_repeat 1 94 0 666 214 139 75 chr4 26533958 26534239 -175794108 - MLT1K LTR MaLR 0 588 290 249 33 0 0 chr4 26534274 26534304 -175794043 + (TCCC)n Simple_repeat Simple_repeat 3 32 0 559 284 44 78 chr4 26534304 26534600 -175793747 - MLT1K LTR MaLR -302 286 1 23 0 0 0 chr4 26534719 26534742 -175793605 + AT_rich Low_complexity Low_complexity 1 23 0 357 262 156 0 chr4 26534767 26534889 -175793458 - LTR67 LTR ERVL -12 545 405 199 297 102 34 chr4 26535332 26535450 -175792897 + L3 LINE CR1 1055 1180 -397 343 336 132 14 chr4 26535510 26535730 -175792617 + L2 LINE L2 2550 2795 -519 213 267 38 120 chr4 26535815 26536138 -175792209 + L2 LINE L2 2796 3109 -163 417 153 0 0 chr4 26536635 26536707 -175791640 + (TG)n Simple_repeat Simple_repeat 1 72 0 322 299 14 48 chr4 26537468 26537615 -175790732 - MER5A DNA MER1_type -39 150 9 301 288 96 8 chr4 26537635 26537760 -175790587 + MIR SINE MIR 27 162 -100 25 0 0 0 chr4 26537940 26537965 -175790382 + AT_rich Low_complexity Low_complexity 1 25 0 208 250 16 31 chr4 26538016 26538080 -175790267 + GA-rich Low_complexity Low_complexity 2 64 0 1880 148 0 40 chr4 26538094 26538398 -175789949 + AluSx SINE Alu 1 292 -20 1462 137 0 55 chr4 26538145 26538399 -175789948 + AluSx SINE Alu 52 292 -20 2366 84 7 0 chr4 26538399 26538707 -175789640 + AluY SINE Alu 2 311 0 1462 137 0 55 chr4 26538707 26538723 -175789624 + AluSx SINE Alu 292 307 -5 716 262 89 0 chr4 26538880 26539100 -175789247 - MIR SINE MIR 0 262 24 244 304 35 17 chr4 26539132 26539247 -175789100 - L1ME LINE L1 -207 5914 5798 294 103 0 0 chr4 26539253 26539292 -175789055 - MIR SINE MIR -107 155 117 257 330 96 50 chr4 26539429 26539690 -175788657 - L2 LINE L2 -73 3240 2968 269 273 186 11 chr4 26539792 26539975 -175788372 + MIR SINE MIR 1 215 -47 1988 127 0 19 chr4 26540068 26540375 -175787972 + AluSx SINE Alu 3 303 -9 247 213 0 0 chr4 26540783 26540830 -175787517 - MIR SINE MIR -111 151 105 217 241 46 46 chr4 26540908 26540995 -175787352 + L2 LINE L2 2950 3036 -236 566 354 13 9 chr4 26541100 26541329 -175787018 + MIR SINE MIR 4 233 -29 286 232 207 12 chr4 26541485 26541567 -175786780 - MIR SINE MIR -109 153 56 23 0 0 0 chr4 26542170 26542193 -175786154 + AT_rich Low_complexity Low_complexity 1 23 0 242 279 16 0 chr4 26542641 26542702 -175785645 + L2 LINE L2 3205 3266 -6 589 305 62 26 chr4 26542746 26542972 -175785375 + MIR SINE MIR 15 248 -14 288 0 0 0 chr4 26593820 26593852 -175734495 + (CA)n Simple_repeat Simple_repeat 2 33 0 484 282 31 18 chr4 26594035 26594198 -175734149 + MIR3 SINE MIR 44 208 0 673 247 58 50 chr4 26594847 26595106 -175733241 - MLT1L LTR MaLR -348 267 7 212 269 19 0 chr4 26595142 26595194 -175733153 + GA-rich Low_complexity Low_complexity 4 56 0 498 336 77 6 chr4 26595194 26595430 -175732917 + MIR SINE MIR 4 254 -8 232 287 99 20 chr4 26595857 26595958 -175732389 - L2 LINE L2 -8 3305 3197 188 222 0 0 chr4 26596088 26596124 -175732223 + L3 LINE CR1 1519 1554 -23 405 0 0 0 chr4 26596309 26596354 -175731993 + (TGAG)n Simple_repeat Simple_repeat 2 46 0 420 256 33 16 chr4 26597812 26597933 -175730414 + L2 LINE L2 3184 3306 -7 2178 109 3 28 chr4 26598058 26598378 -175729969 + AluJb SINE Alu 1 312 0 420 289 47 27 chr4 26598402 26598551 -175729796 - L2 LINE L2 0 3313 3162 1144 226 63 47 chr4 26598682 26599062 -175729285 - MLT1J1 LTR MaLR 0 446 61 601 207 0 9 chr4 26599601 26599712 -175728635 - MER20 DNA MER1_type -1 218 109 1104 206 32 36 chr4 26599722 26599975 -175728372 - THE1C LTR MaLR -50 325 74 581 194 16 48 chr4 26599969 26600093 -175728254 - MER20 DNA MER1_type -99 120 1 * 360 64 0 0 chr4 26601405 26601452 -175726895 + (TTCC)n Simple_repeat Simple_repeat 2 48 0 2173 116 10 0 chr4 26601453 26601763 -175726584 - AluSq SINE Alu 0 313 1 584 268 69 27 chr4 26601882 26602143 -175726204 - L1ME4a LINE L1 -69 6052 5781 559 265 38 27 chr4 26602164 26602349 -175725998 - MIR SINE MIR -27 235 49 570 296 20 5 chr4 26602405 26602601 -175725746 - L1ME4a LINE L1 -347 5774 5576 273 256 50 59 chr4 26603561 26603780 -175724567 - L1MC4 LINE L1 0 8042 7826 1021 217 92 40 chr4 26603804 26604131 -175724216 - L1ME2 LINE L1 -14 6150 5807 350 335 31 6 chr4 26604137 26604298 -175724049 + MLT1L LTR MaLR 451 615 0 552 65 0 0 chr4 26605289 26605366 -175722981 + (TTCC)n Simple_repeat Simple_repeat 4 80 0 2128 144 3 0 chr4 26605387 26605693 -175722654 - AluSx SINE Alu -5 307 1 472 226 66 0 chr4 26605748 26605854 -175722493 - L2 LINE L2 0 3313 3201 711 264 102 25 chr4 26605861 26606145 -175722202 + MLT1G1 LTR MaLR 7 312 -283 530 188 165 18 chr4 26606191 26606361 -175721986 + MLT1G1 LTR MaLR 394 588 -2 825 318 89 25 chr4 26606502 26606962 -175721385 - L2 LINE L2 -260 3053 2558 632 249 143 9 chr4 26606984 26607201 -175721146 - MIR SINE MIR 0 262 17 250 290 37 86 chr4 26607250 26607306 -175721041 - L2 LINE L2 -805 2509 2452 965 129 34 0 chr4 26607306 26607453 -175720894 + L1MA5A LINE L1 6144 6295 -2 250 290 37 86 chr4 26607453 26607558 -175720789 - L2 LINE L2 -862 2452 2356 632 291 69 14 chr4 26607617 26607843 -175720504 - MIR SINE MIR -7 255 14 220 280 0 0 chr4 26607875 26607925 -175720422 + MIR SINE MIR 213 262 0 342 249 230 0 chr4 26608677 26608842 -175719505 - L1ME4a LINE L1 -38 6083 5881 701 264 132 14 chr4 26609048 26609268 -175719079 + MIR SINE MIR 17 262 0 1829 154 0 11 chr4 26609368 26609653 -175718694 + AluJb SINE Alu 1 282 -30 314 314 95 69 chr4 26610844 26611118 -175717229 - L2 LINE L2 -2 3270 2990 521 248 0 129 chr4 26611753 26611963 -175716384 + LTR67 LTR ERVL 3 185 -372 437 239 12 12 chr4 26611982 26612149 -175716198 + CT-rich Low_complexity Low_complexity 3 169 0 217 233 0 0 chr4 26612164 26612207 -175716140 + CT-rich Low_complexity Low_complexity 1 43 0 356 203 0 0 chr4 26612398 26612467 -175715880 - FLAM_A SINE Alu 0 133 65 549 204 99 28 chr4 26612526 26612668 -175715679 - L1MD2 LINE L1 -10 6743 6592 3508 221 49 25 chr4 26612670 26613844 -175714503 - L1MD2 LINE L1 -214 6539 5343 2221 78 0 0 chr4 26613844 26614114 -175714233 - AluSc SINE Alu -6 303 34 3508 221 49 25 chr4 26614114 26614233 -175714114 - L1MD2 LINE L1 -1410 5343 5228 1251 251 36 8 chr4 26614230 26614616 -175713731 - L1MD2 LINE L1 -2781 3759 3363 * 2038 186 14 0 chr4 26614638 26614998 -175713349 + MLT1B LTR MaLR 26 390 0 467 113 0 0 chr4 26615022 26615084 -175713263 - AluS SINE Alu -242 68 7 1499 123 9 0 chr4 26615084 26615295 -175713052 + AluSg/x SINE Alu 83 295 -15 9392 213 87 43 chr4 26615295 26615936 -175712411 - L1MD2 LINE L1 -3300 3240 2629 2189 114 10 0 chr4 26615936 26616233 -175712114 - AluSc SINE Alu -7 302 3 9392 213 87 43 chr4 26616233 26616985 -175711362 - L1MD2 LINE L1 -3911 2629 1912 593 168 72 48 chr4 26616985 26617110 -175711237 + FLAM_C SINE Alu 1 128 -5 9392 213 87 43 chr4 26617110 26618426 -175709921 - L1MD2 LINE L1 -4628 1912 364 279 0 0 0 chr4 26618426 26618457 -175709890 + (TG)n Simple_repeat Simple_repeat 1 31 0 9392 213 87 43 chr4 26618457 26618818 -175709529 - L1MD2 LINE L1 -6176 364 20 279 215 38 13 chr4 26618827 26618906 -175709441 + LTR67 LTR ERVL 477 557 0 3231 132 40 8 chr4 26618997 26619145 -175709202 - L1MA9 LINE L1 0 7272 7130 180 97 0 0 chr4 26619145 26619176 -175709171 + (TG)n Simple_repeat Simple_repeat 2 32 0 3231 132 40 8 chr4 26619176 26619528 -175708819 - L1MA9 LINE L1 -142 7130 6756 297 123 0 62 chr4 26619570 26619635 -175708712 - L1MA9 LINE L1 -1850 5256 5196 3241 240 70 62 chr4 26619638 26621592 -175706755 - L1MA9 LINE L1 -3360 3746 2146 2089 134 0 13 chr4 26621592 26621905 -175706442 - AluSq SINE Alu -3 310 2 3241 240 70 62 chr4 26621905 26622876 -175705471 - L1MA9 LINE L1 -4960 2146 1184 1526 249 21 21 chr4 26622992 26623366 -175704981 + MLT1A2 LTR MaLR 1 374 0 2846 115 38 35 chr4 26623841 26623884 -175704463 - MSTA LTR MaLR 0 428 387 2285 105 20 0 chr4 26623884 26624188 -175704159 + AluSg SINE Alu 1 310 0 2846 115 38 35 chr4 26624188 26624571 -175703776 - MSTA LTR MaLR -41 387 1 1084 252 5 3 chr4 26626335 26626584 -175701763 + MIR SINE MIR 15 257 -5 1866 128 39 0 chr4 26628135 26628416 -175699931 + AluSx SINE Alu 1 292 -20 270 289 82 23 chr4 26628431 26628576 -175699771 - MIR SINE MIR -62 146 10 230 211 14 42 chr4 26629536 26629607 -175698740 + MLT1L LTR MaLR 327 395 -220 22 70 0 0 chr4 26629727 26629770 -175698577 + AT_rich Low_complexity Low_complexity 1 43 0 2434 102 0 0 chr4 26630073 26630386 -175697961 - AluSq SINE Alu 0 313 1 480 283 81 6 chr4 26631040 26631213 -175697134 + MIR SINE MIR 65 250 -12 360 223 112 99 chr4 26631677 26631910 -175696437 + L2 LINE L2 3074 3309 -4 2065 151 0 3 chr4 26631951 26632256 -175696091 - AluJb SINE Alu -8 304 1 917 255 56 40 chr4 26632439 26632741 -175695606 + MLT1I LTR MaLR 95 401 -8 357 150 0 0 chr4 26632892 26632952 -175695395 - FLAM_A SINE Alu -3 130 71 2197 119 0 0 chr4 26634306 26634609 -175693738 - AluSx SINE Alu -9 303 1 2570 124 2 100 chr4 26634691 26635150 -175693197 + MLT2D LTR ERVL 1 414 0 234 333 56 11 chr4 26635251 26635341 -175693006 - MIR SINE MIR -69 139 46 360 286 163 25 chr4 26636796 26636999 -175691348 + MIR SINE MIR 30 260 -2 1174 205 67 0 chr4 26637183 26637393 -175690954 + MER58A DNA MER1_type 1 224 0 220 253 165 44 chr4 26637985 26638076 -175690271 - L2 LINE L2 -30 3242 3141 525 264 103 94 chr4 26638342 26638758 -175689589 - MER115 DNA AcHobo -245 448 29 2305 101 0 3 chr4 26638929 26639236 -175689111 + AluSg1 SINE Alu 1 306 -3 197 65 32 0 chr4 26639631 26639662 -175688685 + (TG)n Simple_repeat Simple_repeat 1 32 0 2483 236 28 8 chr4 26640523 26641031 -175687316 + LTR53 LTR ERVL 2 519 0 395 286 95 20 chr4 26641034 26641181 -175687166 + MIR SINE MIR 35 192 -70 2293 116 0 0 chr4 26641200 26641502 -175686845 - AluSq SINE Alu -11 302 1 793 268 72 41 chr4 26641502 26641920 -175686427 - L2 LINE L2 -6 3307 2877 2227 128 128 28 chr4 26641936 26642102 -175686245 + MSTA LTR MaLR 1 149 -279 1996 108 0 14 chr4 26642102 26642381 -175685966 + AluY SINE Alu 20 294 -17 2227 128 128 28 chr4 26642381 26642603 -175685744 + MSTA LTR MaLR 149 428 0 6078 158 6 44 chr4 26642605 26643693 -175684654 + MSTA-int LTR MaLR 3 1048 -532 240 83 21 62 chr4 26643694 26643742 -175684605 + MSTA-int LTR MaLR 1535 1580 0 2259 139 131 11 chr4 26643751 26644133 -175684214 + MSTA LTR MaLR 1 428 0 2251 121 3 0 chr4 26644496 26644802 -175683545 - AluSp SINE Alu -6 307 1 417 258 11 108 chr4 26644874 26645060 -175683287 + MIR SINE MIR 44 211 -51 359 215 103 89 chr4 26645333 26645717 -175682630 - L1ME4a LINE L1 -12 6109 5685 864 235 97 5 chr4 26645837 26646033 -175682314 + MER58A DNA MER1_type 1 214 -10 33 73 0 0 chr4 26646131 26646199 -175682148 + AT_rich Low_complexity Low_complexity 1 68 0 1440 183 105 68 chr4 26646521 26646664 -175681683 - Charlie4a DNA MER1_type -1485 476 340 2201 119 60 9 chr4 26646664 26647000 -175681347 + THE1A LTR MaLR 1 353 -2 1440 183 105 68 chr4 26647000 26647314 -175681033 - Charlie4a DNA MER1_type -1621 340 2 503 301 66 48 chr4 26647456 26647730 -175680617 + L1ME LINE L1 5209 5489 -672 1755 180 24 7 chr4 26647730 26648025 -175680322 + AluJb SINE Alu 1 300 -12 503 301 66 48 chr4 26648025 26648256 -175680091 + L1ME LINE L1 5489 5714 -447 3096 194 20 7 chr4 26648509 26649061 -175679286 + MER89 LTR ERV1 1 559 0 2126 107 24 13 chr4 26649253 26649551 -175678796 + AluSq SINE Alu 1 301 -12 407 269 126 47 chr4 26650676 26650977 -175677370 + L2 LINE L2 2988 3312 -1 2015 156 13 50 chr4 26651212 26651452 -175676895 - MLT1A1 LTR MaLR 0 365 143 2554 119 31 19 chr4 26651452 26651812 -175676535 + THE1B LTR MaLR 1 364 0 2015 156 13 50 chr4 26651812 26651950 -175676397 - MLT1A1 LTR MaLR -222 143 1 1017 104 0 0 chr4 26652029 26652163 -175676184 - AluSg/x SINE Alu -21 291 158 2220 111 7 0 chr4 26652584 26652881 -175675466 - AluSq SINE Alu -14 299 1 203 247 140 11 chr4 26652941 26653034 -175675313 - MIR SINE MIR -50 212 108 226 341 62 8 chr4 26653786 26653915 -175674432 + MIR3 SINE MIR 12 147 -61 394 323 79 0 chr4 26654066 26654230 -175674117 + MIR SINE MIR 14 190 -72 334 73 0 0 chr4 26655050 26655091 -175673256 - MLT2C1 LTR ERVL 0 397 357 360 0 0 0 chr4 26655094 26655134 -175673213 + (TG)n Simple_repeat Simple_repeat 2 41 0 3058 101 14 20 chr4 26655135 26655573 -175672774 - MLT2A1 LTR ERVL -8 436 2 201 39 0 0 chr4 26655575 26655601 -175672746 + (TG)n Simple_repeat Simple_repeat 1 26 0 225 0 0 0 chr4 26655601 26655626 -175672721 + (GA)n Simple_repeat Simple_repeat 1 25 0 1619 230 27 66 chr4 26655628 26656111 -175672236 - MLT2B1 LTR ERVL -56 464 1 2327 187 65 16 chr4 26656134 26656577 -175671770 + MLT1C LTR MaLR 3 467 0 673 265 91 16 chr4 26656578 26656831 -175671516 + MLT1L LTR MaLR 340 611 -4 385 319 29 14 chr4 26657304 26657442 -175670905 + L2 LINE L2 2916 3055 -217 244 314 97 24 chr4 26657538 26657662 -175670685 + MIR3 SINE MIR 25 157 -51 288 276 60 26 chr4 26658629 26658745 -175669602 + MER5B DNA MER1_type 1 120 -58 395 339 18 9 chr4 26658745 26658857 -175669490 + L2 LINE L2 3158 3270 -2 324 322 89 7 chr4 26658900 26659046 -175669301 + MIR SINE MIR 96 253 -9 724 248 209 27 chr4 26659118 26659449 -175668898 - MLT1I LTR MaLR 0 409 19 2246 125 0 3 chr4 26659617 26659930 -175668417 - AluSx SINE Alu 0 312 1 1022 266 57 3 chr4 26659967 26660283 -175668064 - L1MB7 LINE L1 -10 6672 6340 861 254 29 25 chr4 26660286 26660530 -175667817 - LTR55 LTR ERV -5 543 299 6713 239 45 30 chr4 26660535 26663787 -175664560 - L1MB7 LINE L1 -1443 5201 524 309 287 84 38 chr4 26663959 26664220 -175664127 - L1MB7 LINE L1 -6257 285 13 425 246 16 16 chr4 26664508 26664634 -175663713 + LTR67 LTR ERVL 432 557 0 739 313 79 63 chr4 26665148 26665653 -175662694 + L3 LINE CR1 859 1371 -206 509 353 60 6 chr4 26666312 26666479 -175661868 - MER91A DNA MER1_type 0 196 21 189 292 112 34 chr4 26666633 26666722 -175661625 + L3 LINE CR1 1370 1465 -112 634 212 192 0 chr4 26666822 26666973 -175661374 - MER5A DNA MER1_type -2 187 8 555 183 242 26 chr4 26666983 26667136 -175661211 - MER5A DNA MER1_type 0 189 4 414 302 48 0 chr4 26667240 26667366 -175660981 - L2 LINE L2 0 3313 3182 497 258 66 13 chr4 26667845 26668034 -175660313 + MIR SINE MIR 4 204 -58 454 326 44 0 chr4 26668400 26668581 -175659766 + L1ME LINE L1 5476 5664 -457 1639 174 0 47 chr4 26668740 26669057 -175659290 + AluJb SINE Alu 1 302 -10 1446 67 114 0 chr4 26669092 26669285 -175659062 - AluY SINE Alu -16 295 81 1049 259 65 45 chr4 26669291 26669781 -175658566 - MLT1G LTR MaLR -76 479 1 281 270 232 27 chr4 26669795 26670058 -175658289 - MLT1H1-int LTR MaLR -30 1705 1028 237 386 74 0 chr4 26670318 26670494 -175657853 - MLT1H1-int LTR MaLR -477 894 706 545 314 18 9 chr4 26670848 26671077 -175657270 - MLT1H1-int LTR MaLR -847 524 294 1506 231 80 76 chr4 26671216 26671767 -175656580 - MLT1H1 LTR MaLR -2 553 1 1941 172 28 46 chr4 26672533 26672928 -175655419 + MLT1B LTR MaLR 1 388 -2 550 207 9 9 chr4 26672933 26673044 -175655303 - L1MC4a LINE L1 -931 6877 6767 372 216 0 0 chr4 26673044 26673118 -175655229 + MLT1D LTR MaLR 1 74 -431 489 279 71 26 chr4 26674121 26674275 -175654072 + MIR SINE MIR 9 169 -93 421 201 15 0 chr4 26676952 26677060 -175651287 + MLT2C2 LTR ERVL 1 72 -342 2168 39 0 16 chr4 26678370 26678628 -175649719 - AluY SINE Alu -13 298 45 1057 214 68 65 chr4 26678664 26679000 -175649347 + MLT2C2 LTR ERVL 59 395 -69 250 149 0 43 chr4 26678959 26679006 -175649341 + MSTD LTR MaLR 288 332 -64 * 220 143 36 18 chr4 26679016 26679072 -175649275 + (CATATA)n Simple_repeat Simple_repeat 1 57 0 226 286 0 22 chr4 26679074 26679165 -175649182 + L1MC4 LINE L1 6614 6702 -1340 * 255 255 0 43 chr4 26679106 26679200 -175649147 - L1MC4 LINE L1 -1339 6703 6614 246 281 73 0 chr4 26679166 26679248 -175649099 + L1MC4 LINE L1 6616 6703 -1339 * 180 176 0 0 chr4 26679249 26679283 -175649064 + (CATATA)n Simple_repeat Simple_repeat 3 36 0 180 152 0 0 chr4 26679304 26679337 -175649010 + (CA)n Simple_repeat Simple_repeat 2 34 0 784 182 7 39 chr4 26679418 26679475 -175648872 - MER5B DNA MER1_type -6 172 115 2165 112 3 0 chr4 26679475 26679795 -175648552 + AluSp SINE Alu 1 321 0 784 182 7 39 chr4 26679795 26679890 -175648457 - MER5B DNA MER1_type -63 115 24 276 236 0 0 chr4 26679891 26679946 -175648401 + Tigger5 DNA MER2_type 1 55 -2268 273 288 0 0 chr4 26679914 26679987 -175648360 + Tigger5 DNA MER2_type 2250 2322 -1 * 244 175 0 0 chr4 26679990 26680030 -175648317 + Tigger5 DNA MER2_type 16 55 -2268 233 245 0 0 chr4 26679999 26680048 -175648299 + Tigger5 DNA MER2_type 2251 2299 -24 * 428 167 26 0 chr4 26680050 26680128 -175648219 + Tigger5 DNA MER2_type 2244 2323 0 886 267 17 31 chr4 26680629 26680826 -175647521 + L1MC4a LINE L1 5655 5848 -1960 590 284 98 16 chr4 26680826 26681020 -175647327 - MER63A DNA MER1_type 0 210 1 886 267 17 31 chr4 26681020 26681114 -175647233 + L1MC4a LINE L1 5848 5942 -1866 2639 185 52 12 chr4 26681135 26681653 -175646694 + L1MB5 LINE L1 5585 6123 -51 1846 154 7 3 chr4 26681653 26681951 -175646396 + AluJb SINE Alu 14 312 0 320 284 103 52 chr4 26682386 26682541 -175645806 + MIR SINE MIR 79 241 -21 436 236 230 6 chr4 26682795 26682969 -175645378 - MIR SINE MIR -13 249 37 438 254 227 22 chr4 26683050 26683235 -175645112 - L3 LINE CR1 -5 1572 1350 676 251 191 53 chr4 26684460 26684878 -175643469 + MLT1H1 LTR MaLR 78 553 -2 1831 209 30 24 chr4 26684933 26685302 -175643045 + MLT1A2 LTR MaLR 2 372 -2 444 261 218 38 chr4 26686377 26686839 -175641508 + MLT1L LTR MaLR 1 604 -11 180 111 0 0 chr4 26687076 26687103 -175641244 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 469 329 84 19 chr4 26688104 26688317 -175640030 + MLT1K LTR MaLR 54 280 -308 425 255 20 10 chr4 26688343 26688445 -175639902 + MLT1K LTR MaLR 486 588 0 249 276 112 37 chr4 26688646 26688780 -175639567 - MIR SINE MIR -17 245 102 595 181 188 0 chr4 26689111 26689249 -175639098 - L1ME1 LINE L1 -5 6161 5998 390 162 0 0 chr4 26689250 26689324 -175639023 + (CA)n Simple_repeat Simple_repeat 2 75 0 234 91 0 0 chr4 26689323 26689356 -175638991 + (TC)n Simple_repeat Simple_repeat 1 33 0 * 225 249 52 88 chr4 26689356 26689549 -175638798 - L1MC2 LINE L1 -316 6028 5843 * 5487 227 63 59 chr4 26689399 26691146 -175637201 - L1ME1 LINE L1 -169 5995 4255 1839 179 0 10 chr4 26691146 26691517 -175636830 - AluJb SINE Alu -2 310 1 5487 227 63 59 chr4 26691517 26691581 -175636766 - L1ME1 LINE L1 -1909 4255 4193 406 0 0 0 chr4 26691581 26691626 -175636721 + (TTTA)n Simple_repeat Simple_repeat 2 88 0 2005 108 29 11 chr4 26691626 26691904 -175636443 - AluSx SINE Alu -1 327 1 5487 227 63 59 chr4 26691904 26693502 -175634845 - L1ME1 LINE L1 -1971 4193 2507 2127 62 12 0 chr4 26693502 26693758 -175634589 - AluY SINE Alu -9 302 44 5487 227 63 59 chr4 26693758 26694081 -175634266 - L1ME1 LINE L1 -3657 2507 2187 2485 138 73 0 chr4 26694208 26694605 -175633742 - MSTB LTR MaLR 0 426 1 249 290 29 0 chr4 26694619 26694688 -175633659 + Charlie8 DNA MER1_type 2347 2417 0 1727 141 9 0 chr4 26695144 26695445 -175632902 - Tigger4(Zombi) DNA MER2_type 0 2731 38 714 309 114 11 chr4 26696510 26696886 -175631461 - MLT1L LTR MaLR 0 615 201 1535 192 34 10 chr4 26697648 26697940 -175630407 - AluJo SINE Alu -13 299 1 409 369 22 9 chr4 26698614 26698836 -175629511 + MIR SINE MIR 3 227 -35 1028 167 0 18 chr4 26698951 26699119 -175629228 - FAM SINE Alu -15 170 6 834 274 151 30 chr4 26699149 26699481 -175628866 - MLT1K LTR MaLR -189 399 28 188 319 151 17 chr4 26700175 26700294 -175628053 + L2 LINE L2 3176 3310 -3 301 323 45 20 chr4 26700517 26700718 -175627629 - MIR SINE MIR -1 261 56 183 156 0 0 chr4 26702021 26702053 -175626294 + CT-rich Low_complexity Low_complexity 2 33 0 1752 138 22 53 chr4 26702053 26702371 -175625976 - AluJb SINE Alu -4 308 1 180 237 34 0 chr4 26702484 26702543 -175625804 + L3 LINE CR1 1371 1431 -146 207 306 0 0 chr4 26702806 26702868 -175625479 - MIR SINE MIR -2 260 199 489 300 89 8 chr4 26702874 26703111 -175625236 + MIR SINE MIR 4 259 -3 379 231 7 61 chr4 26703062 26703209 -175625138 - MIR SINE MIR -21 241 103 * 206 378 14 0 chr4 26703282 26703356 -175624991 - MIR SINE MIR -186 76 2 192 343 111 19 chr4 26703507 26703615 -175624732 - MIR SINE MIR -117 145 28 282 139 13 51 chr4 26703649 26703728 -175624619 + CT-rich Low_complexity Low_complexity 4 79 0 342 214 83 0 chr4 26703733 26703817 -175624530 + MER5B DNA MER1_type 88 178 0 237 326 43 0 chr4 26704081 26704173 -175624174 + L2 LINE L2 2567 2662 -652 343 270 42 98 chr4 26704312 26704527 -175623820 + L2 LINE L2 2954 3156 -116 244 309 74 0 chr4 26704560 26704641 -175623706 - L2 LINE L2 -40 3232 3146 265 309 0 0 chr4 26704911 26704992 -175623355 + L2 LINE L2 3187 3267 -5 204 163 0 0 chr4 26706525 26706568 -175621779 + T-rich Low_complexity Low_complexity 1 43 0 285 253 0 0 chr4 26707830 26707913 -175620434 + A-rich Low_complexity Low_complexity 1 83 0 403 210 198 19 chr4 26707956 26708113 -175620234 + MIR SINE MIR 5 189 -73 286 326 57 7 chr4 26708223 26708364 -175619983 + L3 LINE CR1 1404 1551 -26 2424 86 13 0 chr4 26709828 26710130 -175618217 + AluSg SINE Alu 1 306 -4 212 289 0 26 chr4 26710587 26710663 -175617684 + GA-rich Low_complexity Low_complexity 1 74 0 561 264 163 79 chr4 26711190 26711656 -175616691 + MLT1L LTR MaLR 111 615 0 185 298 73 40 chr4 26715536 26715660 -175612687 + L2 LINE L2 2718 2845 -469 210 309 29 0 chr4 26715759 26715827 -175612520 - MIR SINE MIR -6 256 187 985 199 104 61 chr4 26715932 26716259 -175612088 - L1ME3A LINE L1 -13 6157 5817 473 295 80 8 chr4 26716301 26716538 -175611809 + L1MC/D LINE L1 5318 5571 -2237 274 265 15 0 chr4 26716568 26716636 -175611711 + L1MC/D LINE L1 5694 5762 -2046 1817 175 112 48 chr4 26717098 26717208 -175611139 - MLT1D LTR MaLR 0 505 403 2378 100 0 0 chr4 26717208 26717508 -175610839 + AluSx SINE Alu 1 300 -12 1817 175 112 48 chr4 26717508 26717872 -175610475 - MLT1D LTR MaLR -102 403 1 2379 135 22 0 chr4 26718242 26718598 -175609749 - THE1B LTR MaLR 0 364 1 1774 181 26 47 chr4 26718605 26718987 -175609360 + MLT1A2 LTR MaLR 1 374 0 351 0 0 0 chr4 26719107 26719146 -175609201 + (TA)n Simple_repeat Simple_repeat 1 39 0 573 216 130 0 chr4 26720118 26720279 -175608068 + MER5A DNA MER1_type 5 189 0 226 342 37 11 chr4 26720284 26720474 -175607873 + L2 LINE L2 2700 2894 -420 29 28 0 0 chr4 26721676 26721712 -175606635 + AT_rich Low_complexity Low_complexity 1 36 0 1856 136 7 14 chr4 26721712 26721999 -175606348 - AluJo SINE Alu -17 295 11 259 204 182 34 chr4 26723205 26723293 -175605054 - MLT1H LTR MaLR -44 505 405 547 184 160 0 chr4 26723332 26723457 -175604890 + MLT1H LTR MaLR 405 549 0 193 200 0 0 chr4 26723825 26723865 -175604482 - L2 LINE L2 -852 2462 2423 1735 239 126 10 chr4 26724076 26724562 -175603785 - MLT1F LTR MaLR 0 542 1 309 246 92 80 chr4 26724809 26724943 -175603404 - MIR SINE MIR -67 141 30 2147 119 3 0 chr4 26724943 26725237 -175603110 - AluSx SINE Alu -16 296 2 309 246 92 80 chr4 26725237 26725267 -175603080 - MIR SINE MIR -178 30 2 252 122 0 0 chr4 26726122 26726163 -175602184 + (GGA)n Simple_repeat Simple_repeat 3 43 0 180 111 0 0 chr4 26728063 26728090 -175600257 + (A)n Simple_repeat Simple_repeat 1 27 0 524 254 66 44 chr4 26728421 26728602 -175599745 - MARNA DNA Mariner -86 500 316 197 407 12 0 chr4 26728684 26728770 -175599577 + L2 LINE L2 3186 3272 0 301 333 88 13 chr4 26728777 26728936 -175599411 - MARNA DNA Mariner -373 213 43 440 266 23 0 chr4 26730103 26730231 -175598116 - MIR SINE MIR -53 209 79 265 301 37 73 chr4 26730294 26730430 -175597917 - MIR SINE MIR -130 132 2 335 243 57 36 chr4 26730730 26730870 -175597477 - L2 LINE L2 -8 3264 3122 435 317 62 3 chr4 26730902 26731097 -175597250 - MIR SINE MIR 0 262 48 2533 58 0 0 chr4 26731109 26731403 -175596944 + AluY SINE Alu 1 294 -17 2040 123 6 25 chr4 26731560 26731877 -175596470 - AluSx SINE Alu -1 311 1 258 331 103 6 chr4 26731877 26732052 -175596295 - L2 LINE L2 -565 2749 2558 247 326 81 38 chr4 26732182 26732526 -175595821 - L2 LINE L2 -1224 2090 1732 30 0 0 0 chr4 26733498 26733528 -175594819 + AT_rich Low_complexity Low_complexity 1 30 0 270 239 76 22 chr4 26733781 26733873 -175594474 + L1MC4a LINE L1 5834 5930 -1878 209 222 0 0 chr4 26733913 26733958 -175594389 + (TA)n Simple_repeat Simple_repeat 1 45 0 22 0 0 0 chr4 26734084 26734106 -175594241 + AT_rich Low_complexity Low_complexity 1 22 0 1937 147 7 10 chr4 26734113 26734419 -175593928 + AluSx SINE Alu 1 305 -7 204 214 0 36 chr4 26734445 26734501 -175593846 + A-rich Low_complexity Low_complexity 2 55 0 761 190 127 13 chr4 26736319 26736477 -175591870 - MER45A DNA AcHobo 0 178 3 246 253 111 40 chr4 26737574 26737673 -175590674 - MIR SINE MIR -89 173 68 303 230 20 10 chr4 26737906 26738006 -175590341 - MER113 DNA MER1_type? -415 106 6 384 319 32 16 chr4 26738313 26738501 -175589846 - L3 LINE CR1 -503 1074 884 2127 128 7 0 chr4 26738959 26739248 -175589099 + AluSx SINE Alu 1 291 -21 343 272 39 106 chr4 26739299 26739611 -175588736 - L1ME LINE L1 -347 5774 5484 996 184 27 5 chr4 26740264 26740449 -175587898 + MER5A DNA MER1_type 1 189 0 350 274 48 0 chr4 26741045 26741129 -175587218 + MER117 DNA MER1_type 109 196 -1 260 140 105 0 chr4 26741158 26741215 -175587132 + L2 LINE L2 3210 3272 0 24 0 0 0 chr4 26744039 26744063 -175584284 + AT_rich Low_complexity Low_complexity 1 24 0 411 292 40 71 chr4 26744247 26744600 -175583747 + L1ME4a LINE L1 5573 5914 -207 261 0 0 0 chr4 26744618 26744647 -175583700 + (TC)n Simple_repeat Simple_repeat 1 29 0 * 306 0 0 0 chr4 26744646 26744680 -175583667 + (CA)n Simple_repeat Simple_repeat 1 34 0 282 56 0 0 chr4 26744680 26744716 -175583631 + (GA)n Simple_repeat Simple_repeat 1 36 0 2614 54 0 0 chr4 26744800 26745096 -175583251 - AluY SINE Alu -15 296 1 182 200 73 0 chr4 26745868 26745923 -175582424 - L2 LINE L2 -335 2978 2920 3473 179 6 25 chr4 26745977 26746609 -175581738 - MER82 DNA MER2_type -4 649 30 230 343 19 19 chr4 26747295 26747403 -175580944 + MIR SINE MIR 33 140 -122 236 213 0 0 chr4 26748664 26748711 -175579636 - MER91 DNA MER1_type 0 140 94 411 308 109 24 chr4 26749394 26749885 -175578462 + L2 LINE L2 2739 3272 -41 2062 125 4 0 chr4 26750108 26750424 -175577923 + AluSx SINE Alu 1 317 0 557 258 54 21 chr4 26750490 26750709 -175577638 - MIR SINE MIR -34 228 11 279 215 156 76 chr4 26750827 26751064 -175577283 + L2 LINE L2 2900 3155 -158 232 240 94 10 chr4 26751064 26751160 -175577187 - HsTC2 DNA Tc2 0 1900 1797 340 118 0 0 chr4 26751169 26751220 -175577127 - HsTC2 DNA Tc2 -1846 52 2 297 192 192 48 chr4 26751221 26751346 -175577001 + L2 LINE L2 3167 3309 -4 478 220 0 10 chr4 26751359 26751459 -175576888 - MIR SINE MIR -91 171 73 290 304 40 27 chr4 26752999 26753147 -175575200 + L2 LINE L2 3104 3253 -60 422 242 86 0 chr4 26753241 26753369 -175574978 - MIR SINE MIR -86 176 38 428 224 10 10 chr4 26753459 26753557 -175574790 - MER63 DNA MER1_type -291 771 674 4302 140 21 28 chr4 26753605 26753907 -175574440 + MER44D DNA MER2_type 32 201 -2286 2242 90 4 0 chr4 26753907 26754224 -175574123 + AluSc SINE Alu 1 318 0 4302 140 21 28 chr4 26754224 26754627 -175573720 + MER44D DNA MER2_type 201 605 0 201 64 0 64 chr4 26755805 26755852 -175572495 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 270 320 86 36 chr4 26756023 26756245 -175572102 - L2 LINE L2 -233 3039 2807 204 213 0 0 chr4 26756820 26756867 -175571480 + (CA)n Simple_repeat Simple_repeat 2 48 0 1035 165 0 24 chr4 26756875 26757045 -175571302 - AluJb SINE Alu -11 301 136 416 19 19 0 chr4 26757896 26757949 -175570398 + (CA)n Simple_repeat Simple_repeat 2 55 0 1019 81 0 0 chr4 26759100 26759224 -175569123 + AluSg/x SINE Alu 176 299 -11 225 286 0 66 chr4 26760120 26760211 -175568136 - MIR3 SINE MIR -32 176 92 654 298 80 30 chr4 26760387 26760750 -175567597 + L2 LINE L2 2879 3259 -54 1955 143 3 34 chr4 26760900 26761222 -175567125 + AluSx SINE Alu 1 312 0 280 263 166 23 chr4 26761526 26761701 -175566646 + MIR SINE MIR 58 257 -5 867 265 90 45 chr4 26761838 26762193 -175566154 - L2 LINE L2 0 3313 2943 1183 200 98 0 chr4 26762849 26763144 -175565203 - MER5C DNA MER1_type 0 324 1 1738 182 65 3 chr4 26764681 26765005 -175563342 + MER47A DNA MER2_type 1 344 -22 6940 165 3 10 chr4 26765006 26766881 -175561466 + L1PB1 LINE L1 3932 5792 -359 189 0 0 0 chr4 26766881 26766902 -175561445 + (CA)n Simple_repeat Simple_repeat 1 21 0 6940 165 3 10 chr4 26766902 26767260 -175561087 + L1PB1 LINE L1 5792 6151 0 510 272 35 40 chr4 26767466 26767694 -175560653 + MER34 LTR ERV1 1 227 -315 323 235 158 65 chr4 26768298 26768545 -175559802 + MER34 LTR ERV1 225 494 -48 2181 129 3 0 chr4 26768628 26768939 -175559408 + AluSx SINE Alu 1 312 0 308 143 238 60 chr4 26769091 26769175 -175559172 + LTR8 LTR ERV1 1 99 -592 2281 165 179 20 chr4 26769179 26769725 -175558622 + LTR10E LTR ERV1 1 633 0 2661 194 46 47 chr4 26769728 26770342 -175558005 + LTR8A LTR ERV1 115 727 0 1467 201 0 0 chr4 26770375 26770614 -175557733 - MER8 DNA MER2_type 0 239 1 232 339 31 23 chr4 26771343 26771473 -175556874 + MIR SINE MIR 58 188 -74 291 28 0 0 chr4 26772426 26772462 -175555885 + (CA)n Simple_repeat Simple_repeat 2 37 0 196 287 205 0 chr4 26772527 26772649 -175555698 + MIR3 SINE MIR 54 200 -8 232 282 51 26 chr4 26772676 26772754 -175555593 + MIR SINE MIR 25 104 -104 204 381 94 5 chr4 26772764 26772987 -175555360 - MIR SINE MIR 0 262 20 181 268 42 0 chr4 26774103 26774174 -175554173 + L2 LINE L2 3115 3188 -125 345 289 29 0 chr4 26774192 26774296 -175554051 + MER94 DNA DNA 6 112 -22 566 293 16 60 chr4 26774421 26774670 -175553677 + MIR SINE MIR 10 247 -15 542 258 22 22 chr4 26775281 26775463 -175552884 - MIR SINE MIR -11 251 70 376 308 76 20 chr4 26775677 26775715 -175552632 + MLT1L LTR MaLR 401 435 -180 690 179 20 77 chr4 26775715 26775911 -175552436 - MER53 DNA DNA 0 189 5 376 308 76 20 chr4 26775911 26776070 -175552277 + MLT1L LTR MaLR 435 609 -6 21 0 0 0 chr4 26776274 26776295 -175552052 + AT_rich Low_complexity Low_complexity 1 21 0 1686 86 9 0 chr4 26776463 26776684 -175551663 + AluY SINE Alu 83 305 -6 198 0 0 0 chr4 26776806 26776828 -175551519 + (TGAA)n Simple_repeat Simple_repeat 1 22 0 189 74 0 0 chr4 26777223 26777250 -175551097 + (TC)n Simple_repeat Simple_repeat 1 27 0 346 261 63 74 chr4 26777532 26777816 -175550531 + L1M4 LINE L1 4565 4845 -1301 294 125 0 0 chr4 26779722 26779770 -175548577 + (GA)n Simple_repeat Simple_repeat 2 49 0 246 95 0 0 chr4 26779858 26779900 -175548447 + (T)n Simple_repeat Simple_repeat 1 42 0 2003 123 3 7 chr4 26779916 26780200 -175548147 + AluSx SINE Alu 1 283 -29 2318 57 0 69 chr4 26780644 26780961 -175547386 + AluY SINE Alu 1 295 -16 27 49 0 0 chr4 26781071 26781112 -175547235 + AT_rich Low_complexity Low_complexity 1 41 0 709 186 16 8 chr4 26781121 26781250 -175547097 - FLAM_C SINE Alu -2 131 2 770 226 57 0 chr4 26781252 26781429 -175546918 + MER3 DNA MER1_type 12 198 -11 1276 230 60 0 chr4 26781500 26781752 -175546595 + Tigger7 DNA MER2_type 1 267 -2220 564 168 0 30 chr4 26781751 26781852 -175546495 + Tigger7 DNA MER2_type 2390 2487 0 * 489 76 0 0 chr4 26781893 26781959 -175546388 + (CA)n Simple_repeat Simple_repeat 1 66 0 34 24 0 0 chr4 26782639 26782680 -175545667 + AT_rich Low_complexity Low_complexity 1 41 0 2012 134 14 7 chr4 26782787 26783101 -175545246 - AluSx SINE Alu 0 316 1 213 39 0 0 chr4 26783834 26783860 -175544487 + (A)n Simple_repeat Simple_repeat 1 26 0 2141 100 7 10 chr4 26784852 26785153 -175543194 + AluSq SINE Alu 2 301 -12 1330 112 0 0 chr4 26785153 26785331 -175543016 + AluSg/x SINE Alu 132 309 -1 466 204 42 42 chr4 26785349 26785491 -175542856 + MER5A DNA MER1_type 43 184 -5 1961 161 45 9 chr4 26785710 26786046 -175542301 + MER7A DNA MER2_type 1 346 0 505 284 59 87 chr4 26786852 26787243 -175541104 + MLT1I LTR MaLR 28 407 -2 389 248 101 20 chr4 26787398 26787547 -175540800 - MIR SINE MIR -54 208 48 265 234 16 16 chr4 26788011 26788075 -175540272 - L2 LINE L2 -2 3270 3207 882 249 114 4 chr4 26788160 26788433 -175539914 + MER46C DNA MER2_type 27 329 -9 412 185 99 0 chr4 26788830 26788911 -175539436 - MER112 DNA MER1_type -78 182 94 220 362 37 3 chr4 26789432 26789557 -175538790 - MIR SINE MIR -59 149 16 1977 177 0 0 chr4 26789781 26790097 -175538250 + MER7A DNA MER2_type 29 342 -4 782 255 62 5 chr4 26790210 26790418 -175537929 + MIR SINE MIR 2 221 -41 457 299 57 0 chr4 26791540 26791744 -175536603 - MIR SINE MIR 0 262 48 270 291 120 8 chr4 26791744 26791861 -175536486 - LTR67 LTR ERVL 0 557 428 295 322 50 33 chr4 26793739 26793860 -175534487 + L2 LINE L2 3146 3268 -4 483 266 131 34 chr4 26795834 26796055 -175532292 - MIR SINE MIR -9 253 12 1837 159 0 13 chr4 26797334 26797642 -175530705 + AluJb SINE Alu 2 305 -7 647 263 18 58 chr4 26797782 26798006 -175530341 + MIR SINE MIR 19 233 -29 410 159 23 34 chr4 26798207 26798295 -175530052 - MIR SINE MIR -34 228 142 1338 212 90 40 chr4 26798395 26798772 -175529575 - MSTD LTR MaLR 0 396 1 381 291 69 26 chr4 26798822 26799011 -175529336 + MLT1J LTR MaLR 307 503 -8 2025 107 41 3 chr4 26799230 26799520 -175528827 - AluSx SINE Alu -9 303 3 228 111 0 0 chr4 26799575 26799611 -175528736 + (TTCA)n Simple_repeat Simple_repeat 3 38 0 220 220 0 51 chr4 26799627 26799686 -175528661 + MIR3 SINE MIR 15 70 -138 249 226 16 16 chr4 26799901 26799963 -175528384 + (TAG)n Simple_repeat Simple_repeat 1 62 0 318 132 0 0 chr4 26800635 26800688 -175527659 + (ATG)n Simple_repeat Simple_repeat 3 55 0 835 200 16 60 chr4 26800743 26800979 -175527368 + L1ME3 LINE L1 5934 6162 -8 264 203 95 0 chr4 26801042 26801116 -175527231 + L1ME4a LINE L1 6000 6080 -41 238 304 14 14 chr4 26801920 26801989 -175526358 + L2 LINE L2 3199 3267 -5 221 81 0 27 chr4 26802271 26802308 -175526039 + (GGAA)n Simple_repeat Simple_repeat 1 36 0 231 316 119 68 chr4 26802572 26802866 -175525481 - L2 LINE L2 -32 3240 2932 302 280 17 86 chr4 26803855 26804027 -175524320 - MIR SINE MIR -53 209 50 216 339 0 0 chr4 26804214 26804273 -175524074 - L2 LINE L2 -9 3263 3205 337 296 50 36 chr4 26804507 26804727 -175523620 - L2 LINE L2 -425 2889 2667 266 352 66 11 chr4 26805526 26805708 -175522639 + L2 LINE L2 2897 3088 -184 262 254 180 74 chr4 26807584 26807706 -175520641 - L2 LINE L2 0 3272 3138 208 321 0 0 chr4 26807866 26807922 -175520425 + L2 LINE L2 3201 3256 -16 1540 195 0 7 chr4 26808357 26808664 -175519683 + AluJb SINE Alu 1 305 -7 874 277 25 4 chr4 26809195 26809402 -175518945 - L1ME1 LINE L1 -5 6161 5947 2203 92 3 10 chr4 26809402 26809716 -175518631 - AluSq SINE Alu -1 312 1 874 277 25 4 chr4 26809716 26809746 -175518601 - L1ME1 LINE L1 -219 5947 5919 665 137 8 16 chr4 26809746 26809870 -175518477 + L1MA10 LINE L1 6212 6334 0 457 111 0 0 chr4 26809993 26810056 -175518291 + MER66B LTR ERV1 295 357 -129 1656 225 37 31 chr4 26810128 26810506 -175517841 - L1ME1 LINE L1 -491 5675 5281 2185 104 3 0 chr4 26810506 26810815 -175517532 - AluSg SINE Alu 0 310 1 1656 225 37 31 chr4 26810815 26811006 -175517341 - L1ME1 LINE L1 -885 5281 5093 405 58 0 0 chr4 26811020 26811072 -175517275 + (TG)n Simple_repeat Simple_repeat 1 52 0 1988 118 0 0 chr4 26811072 26811352 -175516995 - AluSq SINE Alu -33 280 1 846 257 107 65 chr4 26811354 26811766 -175516581 + MLT1J LTR MaLR 41 469 -42 1844 133 14 0 chr4 26811981 26812314 -175516033 - AluSq SINE Alu 0 337 1 455 178 23 62 chr4 26812795 26812924 -175515423 - MIR SINE MIR -34 228 105 296 277 12 0 chr4 26812941 26813024 -175515323 + MLT1K LTR MaLR 26 109 -479 1836 154 36 109 chr4 26813326 26813820 -175514527 - MLT1C LTR MaLR -9 458 1 1683 167 10 16 chr4 26814032 26814343 -175514004 + AluJo SINE Alu 1 309 -3 184 255 21 85 chr4 26815076 26815170 -175513177 - MER5A DNA MER1_type -10 179 92 1541 178 36 111 chr4 26815170 26815193 -175513154 - MLT1C LTR MaLR 0 467 444 2130 104 7 126 chr4 26815193 26815606 -175512741 + THE1B LTR MaLR 1 364 0 1541 178 36 111 chr4 26815606 26816063 -175512284 - MLT1C LTR MaLR -23 444 18 314 333 10 10 chr4 26816100 26816196 -175512151 - MER5A DNA MER1_type -91 98 3 217 407 93 7 chr4 26816196 26816330 -175512017 - L2 LINE L2 -50 3222 3077 665 212 143 25 chr4 26816345 26816548 -175511799 + MIR SINE MIR 36 262 0 274 314 12 12 chr4 26816702 26816788 -175511559 - L2 LINE L2 -4 3268 3183 377 313 18 9 chr4 26816963 26817075 -175511272 + L2 LINE L2 3159 3271 -1 195 256 0 0 chr4 26817887 26817930 -175510417 + L2 LINE L2 3267 3309 -4 31 76 0 0 chr4 26818363 26818429 -175509918 + GC_rich Low_complexity Low_complexity 1 66 0 210 265 20 20 chr4 26818516 26818663 -175509684 + (CCG)n Simple_repeat Simple_repeat 1 147 0 29 84 0 0 chr4 26818678 26818749 -175509598 + GC_rich Low_complexity Low_complexity 1 71 0 353 274 123 0 chr4 26818947 26819053 -175509294 + L2 LINE L2 3191 3309 -4 758 141 0 16 chr4 26819290 26819418 -175508929 + AluJb SINE Alu 13 138 -174 331 301 68 28 chr4 26819426 26819602 -175508745 + MER113 DNA MER1_type? 339 521 0 272 277 79 10 chr4 26819678 26819779 -175508568 - MIR SINE MIR -56 206 99 240 35 0 0 chr4 26820002 26820031 -175508316 + (A)n Simple_repeat Simple_repeat 1 29 0 795 232 98 54 chr4 26820063 26820378 -175507969 + MLT1H LTR MaLR 217 545 -4 342 0 0 0 chr4 26822404 26822442 -175505905 + (TG)n Simple_repeat Simple_repeat 2 39 0 221 242 187 22 chr4 26824810 26824901 -175503446 - L2 LINE L2 -3 3269 3164 374 39 0 0 chr4 26825046 26825097 -175503250 + L1MB4 LINE L1 6118 6168 -12 239 314 0 0 chr4 26825347 26825417 -175502930 + MIR3 SINE MIR 104 173 -35 439 319 0 35 chr4 26825550 26825691 -175502656 - MIR3 SINE MIR -60 148 13 1035 219 102 104 chr4 26825726 26826313 -175502034 - MLT1H1 LTR MaLR -2 553 1 370 141 370 22 chr4 26826652 26826744 -175501603 + L2 LINE L2 3180 3303 -10 322 245 41 31 chr4 26826772 26826870 -175501477 - MIR SINE MIR 0 262 164 196 296 104 72 chr4 26827340 26827465 -175500882 - MIR SINE MIR -112 150 22 1006 210 39 63 chr4 26827494 26827847 -175500500 - MLT1B LTR MaLR -1 389 4 400 277 39 92 chr4 26828901 26829107 -175499240 - L2 LINE L2 -7 3306 3112 272 195 24 37 chr4 26829394 26829476 -175498871 - MLT1J LTR MaLR -8 503 423 513 248 68 31 chr4 26829623 26829784 -175498563 - MLT1J LTR MaLR -268 243 77 185 289 0 22 chr4 26829872 26829917 -175498430 - L3 LINE CR1 -27 1550 1507 1746 249 91 75 chr4 26829944 26830526 -175497821 - MLT1G LTR MaLR -4 583 1 490 304 39 67 chr4 26830552 26830864 -175497483 - MLT1G-int LTR MaLR -31 1340 1038 213 121 0 0 chr4 26831114 26831147 -175497200 + (TTTTG)n Simple_repeat Simple_repeat 5 37 0 2048 106 10 13 chr4 26831527 26831828 -175496519 + AluSq SINE Alu 1 300 -13 507 270 122 39 chr4 26831830 26832060 -175496287 - MLT1G-int LTR MaLR -833 538 290 2175 230 72 22 chr4 26832207 26832759 -175495588 - MLT1G LTR MaLR 0 590 11 193 283 0 0 chr4 26834189 26834242 -175494105 + L2 LINE L2 2838 2890 -424 533 161 14 1 chr4 26834270 26834369 -175493978 + MLT1D LTR MaLR 367 505 0 979 288 60 62 chr4 26835650 26836083 -175492264 + MLT1J2 LTR MaLR 21 447 -3 318 222 0 91 chr4 26836808 26836907 -175491440 + L1MC4 LINE L1 6614 6703 -1339 32 0 0 0 chr4 26836910 26836942 -175491405 + AT_rich Low_complexity Low_complexity 1 32 0 461 214 47 107 chr4 26836942 26837193 -175491154 - MLT1I LTR MaLR 0 413 202 255 235 88 0 chr4 26837204 26837272 -175491075 - MLT1J2 LTR MaLR -304 146 73 344 337 101 17 chr4 26837527 26837705 -175490642 + MLT1K LTR MaLR 54 246 -342 198 0 0 0 chr4 26838316 26838338 -175490009 + (TTCA)n Simple_repeat Simple_repeat 1 22 0 1589 86 9 0 chr4 26838459 26838679 -175489668 - AluY SINE Alu -7 304 83 2086 249 57 29 chr4 26889424 26890477 -175437870 + L1MEc LINE L1 2001 3052 -3488 435 306 9 0 chr4 26890477 26890588 -175437759 + MER81 DNA DNA 1 112 -2 2086 249 57 29 chr4 26890588 26890704 -175437643 + L1MEc LINE L1 3052 3163 -3377 7309 57 12 5 chr4 26890710 26892038 -175436309 + L1PA4 LINE L1 112 6056 -493 3325 31 0 0 chr4 26892060 26892452 -175435895 + L1PA4 LINE L1 6157 6548 -1 21 0 0 0 chr4 26892452 26892473 -175435874 + AT_rich Low_complexity Low_complexity 1 21 0 2472 211 123 152 chr4 26892544 26893437 -175434910 + L1MEc LINE L1 273 1191 -5349 408 153 0 0 chr4 26893437 26893496 -175434851 + AluJ/FLAM SINE Alu 1 59 -253 1482 190 7 7 chr4 26893496 26893765 -175434582 + AluJo SINE Alu 28 296 -16 2472 211 123 152 chr4 26893765 26894978 -175433369 + L1MEc LINE L1 1189 2374 -4166 1188 225 38 12 chr4 26894972 26895314 -175433033 + L1MEc LINE L1 3156 3506 -3034 * 2365 109 64 0 chr4 26895331 26895661 -175432686 + LTR18A LTR ERVL 7 357 0 33713 168 9 3 chr4 26895685 26900911 -175427436 + HERVL18 LTR ERVL 791 6047 0 2137 155 38 0 chr4 26900912 26901229 -175427118 + LTR18A LTR ERVL 1 329 -28 * 2692 143 65 10 chr4 26901223 26901743 -175426604 + MER4B LTR ERV1 47 772 -7 644 234 0 41 chr4 26901764 26901821 -175426526 + L1MA10 LINE L1 6171 6229 -105 3998 173 26 29 chr4 26901821 26901841 -175426506 + MER4E LTR ERV1 1 20 -759 1646 154 14 0 chr4 26901841 26902160 -175426187 - AluJb SINE Alu 0 323 1 3998 173 26 29 chr4 26902160 26902920 -175425427 + MER4E LTR ERV1 20 779 0 644 234 0 41 chr4 26902920 26903033 -175425314 + L1MA10 LINE L1 6229 6334 0 630 293 50 33 chr4 26903036 26903336 -175425011 + MLT1K LTR MaLR 275 579 -9 266 293 129 26 chr4 26904140 26904256 -175424091 + L2 LINE L2 3137 3264 -8 429 226 0 32 chr4 26904443 26904598 -175423749 + G-rich Low_complexity Low_complexity 1 150 0 297 143 20 0 chr4 26904620 26904669 -175423678 - MLT1K LTR MaLR -343 245 196 277 191 9 38 chr4 26904933 26905038 -175423309 + GA-rich Low_complexity Low_complexity 2 103 0 322 234 174 36 chr4 26905044 26905211 -175423136 + MLT1K LTR MaLR 396 585 -3 2189 94 0 23 chr4 26905426 26905735 -175422612 + AluSx SINE Alu 1 302 -10 780 259 137 50 chr4 26906160 26906519 -175421828 + MLT1K LTR MaLR 197 586 -2 1491 191 11 3 chr4 26906839 26907149 -175421198 + AluJo SINE Alu 1 312 0 1287 197 24 45 chr4 26907149 26907479 -175420868 + MER33 DNA MER1_type 1 323 -1 779 287 109 39 chr4 26907941 26908398 -175419949 - LTR16C LTR ERVL -2 489 1 469 260 73 11 chr4 26908402 26908579 -175419768 + MLT1K LTR MaLR 395 582 -6 21 0 0 0 chr4 26909749 26909770 -175418577 + AT_rich Low_complexity Low_complexity 1 21 0 423 262 29 0 chr4 26910351 26910454 -175417893 + MIR SINE MIR 51 156 -106 2476 130 31 0 chr4 26910461 26910814 -175417533 + THE1B LTR MaLR 1 364 0 273 89 0 0 chr4 26910872 26910917 -175417430 + (TAGA)n Simple_repeat Simple_repeat 2 46 0 188 163 0 20 chr4 26910919 26910968 -175417379 + (CA)n Simple_repeat Simple_repeat 1 48 0 384 22 0 0 chr4 26911022 26911067 -175417280 + (TG)n Simple_repeat Simple_repeat 1 45 0 352 200 0 0 chr4 26911152 26911222 -175417125 - MIR SINE MIR 0 262 193 1083 180 57 87 chr4 26911416 26911653 -175416694 + MER33 DNA MER1_type 2 228 -2357 2270 81 7 3 chr4 26911653 26911961 -175416386 - AluSx SINE Alu -3 309 1 1083 180 57 87 chr4 26911961 26912056 -175416291 + MER33 DNA MER1_type 228 324 0 435 266 50 52 chr4 26912229 26912472 -175415875 + MLT1J LTR MaLR 205 367 -144 268 308 0 0 chr4 26912629 26912707 -175415640 + LTR67 LTR ERVL 32 109 -448 263 253 13 13 chr4 26912794 26912873 -175415474 + LTR67 LTR ERVL 471 549 -8 443 255 0 20 chr4 26913284 26913386 -175414961 + MIR SINE MIR 35 134 -128 685 264 6 13 chr4 26913402 26913561 -175414786 + MER45A DNA AcHobo 21 178 0 226 344 56 0 chr4 26913561 26913686 -175414661 + MIR SINE MIR 128 259 -3 427 261 82 46 chr4 26914771 26914953 -175413394 + MIR3 SINE MIR 6 197 -11 2535 29 7 3 chr4 26914953 26915260 -175413087 - AluY SINE Alu -3 308 1 427 261 82 46 chr4 26915260 26915272 -175413075 + MIR3 SINE MIR 197 207 -1 343 208 22 131 chr4 26915395 26915578 -175412769 - L2 LINE L2 -76 3237 3075 495 222 49 25 chr4 26915653 26915815 -175412532 - MLT1G LTR MaLR 0 542 402 501 248 20 34 chr4 26915861 26916006 -175412341 - MLT1G LTR MaLR -286 304 162 1727 206 134 79 chr4 26916006 26916335 -175412012 + MLT1E1 LTR MaLR 1 310 -344 255 31 0 0 chr4 26916335 26916367 -175411980 + (TC)n Simple_repeat Simple_repeat 1 32 0 2042 153 12 52 chr4 26916377 26916783 -175411564 + MLT1B LTR MaLR 1 390 0 1727 206 134 79 chr4 26916783 26917062 -175411285 + MLT1E1 LTR MaLR 318 654 0 343 221 27 41 chr4 26917062 26917205 -175411142 - MLT1G LTR MaLR -400 155 1 311 216 157 49 chr4 26917797 26917899 -175410448 - L3 LINE CR1 -21 1556 1444 494 240 16 16 chr4 26918587 26918708 -175409639 - MIR SINE MIR -16 246 126 375 244 81 16 chr4 26919186 26919309 -175409038 + MIR SINE MIR 37 167 -95 847 285 9 0 chr4 26919316 26919537 -175408810 - MER58A DNA MER1_type -1 223 1 557 198 23 79 chr4 26919548 26919603 -175408744 - MLT1J LTR MaLR -22 489 432 2001 125 0 10 chr4 26919603 26919899 -175408448 + AluSc SINE Alu 1 293 -16 557 198 23 79 chr4 26919899 26920020 -175408327 - MLT1J LTR MaLR -79 432 323 942 278 92 46 chr4 26920025 26920108 -175408239 - L2 LINE L2 -407 2907 2829 302 0 26 0 chr4 26920108 26920146 -175408201 + (TG)n Simple_repeat Simple_repeat 2 40 0 942 278 92 46 chr4 26920146 26920432 -175407915 - L2 LINE L2 -485 2829 2521 349 293 0 0 chr4 26920589 26920671 -175407676 + L2 LINE L2 3160 3241 -31 1014 103 0 0 chr4 26920671 26920807 -175407540 - AluSc SINE Alu -158 151 16 288 218 64 13 chr4 26921154 26921232 -175407115 + MIR3 SINE MIR 90 171 -37 1386 149 116 11 chr4 26921403 26921671 -175406676 + AluSg SINE Alu 1 296 -14 1110 259 8 4 chr4 26921917 26922172 -175406175 + MIR SINE MIR 7 262 0 216 245 19 0 chr4 26922193 26922246 -175406101 + MIR SINE MIR 73 126 -136 671 258 45 0 chr4 26922246 26922424 -175405923 + MIR SINE MIR 59 244 -18 242 276 126 11 chr4 26922440 26922527 -175405820 - L2 LINE L2 -3 3269 3173 2029 224 171 4 chr4 26924267 26924753 -175403594 - MLT1F1 LTR MaLR 0 567 1 387 294 111 8 chr4 26926659 26926785 -175401562 + MLT1E LTR MaLR 1 139 -454 1798 141 7 10 chr4 26926855 26927145 -175401202 - AluJo SINE Alu -21 291 3 211 281 91 74 chr4 26927204 26927325 -175401022 + L2 LINE L2 3177 3299 -14 3728 161 25 0 chr4 26933306 26933479 -175394868 + L1MB3 LINE L1 5524 5691 -492 1843 174 80 3 chr4 26933479 26933818 -175394529 + MLT1A1 LTR MaLR 1 365 0 3728 161 25 0 chr4 26933818 26934288 -175394059 + L1MB3 LINE L1 5691 6183 0 593 105 0 9 chr4 26934432 26934537 -175393810 + L1MA8 LINE L1 6185 6288 -3 605 293 13 47 chr4 26934786 26935018 -175393329 + MIR SINE MIR 39 262 0 1033 205 13 61 chr4 26935631 26935860 -175392487 - MIR SINE MIR -30 232 15 641 304 93 23 chr4 26935912 26936383 -175391964 - L1ME4a LINE L1 -108 6013 5510 351 0 0 0 chr4 26936551 26936590 -175391757 + (TG)n Simple_repeat Simple_repeat 2 40 0 2058 103 17 13 chr4 26937234 26937536 -175390811 + AluSx SINE Alu 1 303 -9 358 305 78 21 chr4 26937586 26937727 -175390620 - MIR SINE MIR -95 167 19 1238 258 31 80 chr4 26937888 26938589 -175389758 + L2 LINE L2 2553 3214 -99 2265 102 0 0 chr4 26938589 26938894 -175389453 - AluSg SINE Alu -5 305 1 1238 258 31 80 chr4 26938894 26938990 -175389357 + L2 LINE L2 3214 3313 0 1714 121 0 0 chr4 26939019 26939268 -175389079 + AluSg SINE Alu 60 308 -2 198 297 81 0 chr4 26939443 26939517 -175388830 - MIR SINE MIR -72 190 111 2000 135 3 6 chr4 26939761 26940073 -175388274 + AluJo SINE Alu 1 311 -1 251 309 138 0 chr4 26940912 26941006 -175387341 + L3 LINE CR1 918 1024 -553 205 156 0 0 chr4 26942122 26942154 -175386193 + MIR SINE MIR 221 252 -10 368 301 141 13 chr4 26942538 26942694 -175385653 + MIR SINE MIR 71 246 -16 257 304 0 29 chr4 26943445 26943516 -175384831 + A-rich Low_complexity Low_complexity 2 71 -29 1729 164 10 7 chr4 26943516 26943809 -175384538 + AluJo SINE Alu 6 299 -13 257 304 0 29 chr4 26943809 26943839 -175384508 + A-rich Low_complexity Low_complexity 71 100 0 2433 101 0 0 chr4 26946216 26946524 -175381823 + AluSg SINE Alu 1 308 -2 2210 125 0 0 chr4 26947534 26947829 -175380518 + AluSx SINE Alu 1 295 -17 1045 220 156 42 chr4 26948417 26948946 -175379401 + L2 LINE L2 2729 3313 0 2330 108 0 0 chr4 26950604 26950909 -175377438 + AluY SINE Alu 1 305 -6 231 61 0 0 chr4 26952014 26952047 -175376300 + (ATG)n Simple_repeat Simple_repeat 1 33 0 282 248 103 34 chr4 26952058 26952175 -175376172 - MIR SINE MIR -18 244 120 2368 96 0 0 chr4 26953181 26953474 -175374873 + AluSx SINE Alu 1 293 -19 281 209 88 77 chr4 26956237 26956328 -175372019 - MIR3 SINE MIR -39 169 78 198 0 0 0 chr4 26956344 26956366 -175371981 + (A)n Simple_repeat Simple_repeat 1 22 0 399 296 38 21 chr4 26956849 26957076 -175371271 + MIR SINE MIR 18 248 -14 195 42 0 0 chr4 26959045 26959069 -175369278 + (CA)n Simple_repeat Simple_repeat 2 25 0 285 264 129 12 chr4 26959073 26959236 -175369111 - MER5A DNA MER1_type -7 182 1 201 291 0 18 chr4 26959650 26959760 -175368587 + C-rich Low_complexity Low_complexity 6 113 0 * 215 200 24 35 chr4 26959680 26959765 -175368582 + (CCG)n Simple_repeat Simple_repeat 1 84 0 23 86 0 0 chr4 26959834 26959892 -175368455 + GC_rich Low_complexity Low_complexity 1 58 0 38 89 0 0 chr4 26959956 26960057 -175368290 + GC_rich Low_complexity Low_complexity 1 101 0 236 276 53 0 chr4 26960628 26960704 -175367643 - MIR SINE MIR -74 188 109 316 261 117 0 chr4 26961325 26961436 -175366911 - MIR SINE MIR -58 204 81 197 235 86 12 chr4 26961754 26961835 -175366512 + MIR SINE MIR 2 88 -174 252 242 234 8 chr4 26961841 26961969 -175366378 + MIR SINE MIR 57 213 -49 630 213 247 0 chr4 26962111 26962285 -175366062 + MER20 DNA MER1_type 3 219 0 214 207 35 0 chr4 26962370 26962428 -175365919 + MIR SINE MIR 90 149 -113 23 0 0 0 chr4 26962664 26962687 -175365660 + AT_rich Low_complexity Low_complexity 1 23 0 1037 333 98 23 chr4 26963028 26963209 -175365138 - L2 LINE L2 -16 3297 3131 2144 138 27 41 chr4 26963209 26963578 -175364769 - THE1B LTR MaLR 0 364 1 1037 333 98 23 chr4 26963578 26964080 -175364267 - L2 LINE L2 -182 3131 2499 2459 55 0 7 chr4 26964080 26964371 -175363976 - AluY SINE Alu -16 295 7 1037 333 98 23 chr4 26964371 26964677 -175363670 - L2 LINE L2 -814 2499 2217 429 347 42 33 chr4 26965524 26965737 -175362610 + MLT1K LTR MaLR 38 252 -336 371 286 6 0 chr4 26965837 26966005 -175362342 - L1M4 LINE L1 -2873 3273 3105 734 80 24 8 chr4 26967226 26967351 -175360996 + (TAGA)n Simple_repeat Simple_repeat 4 130 0 315 260 40 0 chr4 26967533 26967633 -175360714 - L2 LINE L2 -1 3271 3168 236 308 54 8 chr4 26969561 26969691 -175358656 - LTR16A LTR ERVL -314 136 1 1090 151 0 0 chr4 26970199 26970490 -175357857 - FRAM SINE Alu 0 301 11 437 342 71 18 chr4 26970729 26970827 -175357520 - MIR SINE MIR 0 262 171 2163 146 36 33 chr4 26970827 26971190 -175357157 - THE1B LTR MaLR 0 364 1 437 342 71 18 chr4 26971190 26971316 -175357031 - MIR SINE MIR -91 171 26 183 405 0 0 chr4 26971455 26971539 -175356808 - L2 LINE L2 -986 2328 2245 582 299 52 34 chr4 26973125 26973393 -175354954 + L2 LINE L2 2997 3269 -44 223 324 49 10 chr4 26973450 26973552 -175354795 + L2 LINE L2 3167 3272 0 671 211 0 8 chr4 26973791 26973924 -175354423 + FLAM_A SINE Alu 1 132 -1 195 42 0 0 chr4 26974035 26974059 -175354288 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 207 205 24 72 chr4 26974882 26974965 -175353382 + L2 LINE L2 2909 2987 -285 2209 89 0 7 chr4 26975008 26975289 -175353058 + AluSx SINE Alu 1 279 -33 428 0 19 0 chr4 26975290 26975342 -175353005 + (CA)n Simple_repeat Simple_repeat 2 54 0 785 191 38 108 chr4 26975452 26975577 -175352770 - Charlie5 DNA MER1_type -1 2623 2491 2361 169 39 28 chr4 26975577 26976039 -175352308 - MLT1C LTR MaLR 0 467 1 785 191 38 108 chr4 26976039 26976254 -175352093 - Charlie5 DNA MER1_type -133 2491 2307 7483 189 32 17 chr4 26976254 26976290 -175352057 - L1P4 LINE L1 -650 5516 5482 1707 167 0 57 chr4 26976290 26976608 -175351739 - AluJo SINE Alu -12 300 1 7483 189 32 17 chr4 26976608 26977089 -175351258 - L1P4 LINE L1 -684 5482 5009 1407 110 10 0 chr4 26977089 26977298 -175351049 - L1PB2 LINE L1 0 6151 5941 7483 189 32 17 chr4 26977298 26978544 -175349803 - L1P4 LINE L1 -1157 5009 3728 4079 123 5 16 chr4 26978546 26979181 -175349166 + L1PA16 LINE L1 5532 6159 -7 397 223 0 11 chr4 26979181 26979275 -175349072 - Charlie5 DNA MER1_type -312 2300 2208 1581 217 104 7 chr4 26979441 26979856 -175348491 - LTR43 LTR ERV1 -21 581 127 296 137 20 0 chr4 26979958 26980009 -175348338 - LTR60 LTR ERV1 -534 52 1 289 296 130 12 chr4 26980137 26980310 -175348037 - MIR SINE MIR -67 141 3 2746 82 6 0 chr4 26981005 26981358 -175346989 + THE1A LTR MaLR 1 355 0 398 218 30 60 chr4 26981432 26981566 -175346781 - MIR SINE MIR -22 186 56 310 260 32 52 chr4 26981914 26982068 -175346279 + MIR SINE MIR 32 182 -80 240 54 108 0 chr4 26982085 26982122 -175346225 - MER106A DNA MER1_type -47 189 149 1861 169 3 3 chr4 26982224 26982526 -175345821 - AluJo SINE Alu -5 307 6 505 275 183 50 chr4 26983081 26983193 -175345154 - L2 LINE L2 -4 3309 3213 1919 164 0 3 chr4 26983193 26983492 -175344855 - AluJo SINE Alu -13 299 2 505 275 183 50 chr4 26983492 26984017 -175344330 - L2 LINE L2 -100 3213 2568 354 251 211 0 chr4 26984215 26984386 -175343961 - MIR SINE MIR -10 252 46 195 69 0 0 chr4 26984633 26984662 -175343685 + (TGAA)n Simple_repeat Simple_repeat 3 31 0 2348 187 37 24 chr4 26985776 26986267 -175342080 - MLT1D LTR MaLR -8 497 1 256 265 176 24 chr4 26986395 26986565 -175341782 + LTR33A LTR ERVL 9 204 -319 436 128 115 0 chr4 26986707 26986785 -175341562 + MER4A LTR ERV1 1 87 -577 1876 116 0 32 chr4 26986821 26987106 -175341241 + MER4A LTR ERV1 388 663 -1 392 221 32 0 chr4 26987107 26987202 -175341145 + LTR33A LTR ERVL 416 513 -10 243 320 39 33 chr4 26987231 26987384 -175340963 + MARNA DNA Mariner 95 248 -338 1306 211 124 75 chr4 26987453 26987642 -175340705 - MLT1D LTR MaLR -27 467 289 4016 114 62 3 chr4 26987642 26988220 -175340127 + LTR9 LTR ERV1 1 612 0 1306 211 124 75 chr4 26988220 26988400 -175339947 - MLT1D LTR MaLR -205 289 79 5308 62 3 12 chr4 26988400 26989066 -175339281 - PABL_A LTR ERV1 0 660 1 1306 211 124 75 chr4 26989066 26989150 -175339197 - MLT1D LTR MaLR -415 79 1 288 77 0 0 chr4 26989186 26989225 -175339122 + (CA)n Simple_repeat Simple_repeat 1 39 0 264 292 11 0 chr4 26989228 26989317 -175339030 + MARNA DNA Mariner 262 351 -235 245 261 261 0 chr4 26990341 26990456 -175337891 - MIR SINE MIR -34 228 84 276 280 33 71 chr4 26990462 26990644 -175337703 - MER104 DNA Tc2 -4 176 2 274 278 89 11 chr4 26990928 26991018 -175337329 - L2 LINE L2 -33 3280 3184 302 250 0 0 chr4 26991396 26991460 -175336887 + MIR SINE MIR 19 82 -180 435 300 88 19 chr4 26991579 26991839 -175336508 - L2 LINE L2 -538 2776 2499 1220 230 111 35 chr4 26991999 26992433 -175335914 + MLT1C LTR MaLR 1 467 0 538 275 6 35 chr4 26992621 26992792 -175335555 + MLT1J LTR MaLR 20 185 -326 1395 191 48 29 chr4 26992861 26993176 -175335171 + MER33 DNA MER1_type 1 321 -3 330 250 0 14 chr4 26993187 26993259 -175335088 + MER58A DNA MER1_type 1 71 -36 2190 122 0 0 chr4 26993281 26993575 -175334772 - AluJb SINE Alu -18 294 1 789 257 6 0 chr4 26993580 26993755 -175334592 + MER58A DNA MER1_type 40 215 -9 296 231 61 61 chr4 26993752 26993899 -175334448 + MLT1J LTR MaLR 321 467 -44 * 2061 144 39 33 chr4 26994904 26995266 -175333081 - THE1B LTR MaLR 0 364 1 2181 144 36 25 chr4 26995888 26996248 -175332099 + THE1B LTR MaLR 1 364 0 468 318 93 24 chr4 26996306 26996595 -175331752 + L2 LINE L2 2818 3126 -146 468 224 110 68 chr4 26996753 26997012 -175331335 - L1ME LINE L1 -502 5619 5353 248 300 46 39 chr4 26997734 26997864 -175330483 + L2 LINE L2 3179 3309 -4 213 283 33 0 chr4 26997864 26997924 -175330423 + (AATTG)n Simple_repeat Simple_repeat 1 62 0 1045 219 218 27 chr4 26997994 26998425 -175329922 - LTR33A LTR ERVL 0 523 48 430 237 244 6 chr4 26999029 26999185 -175329162 + MIR SINE MIR 67 259 -3 2112 109 7 0 chr4 26999202 26999506 -175328841 - AluY SINE Alu -4 307 2 707 303 38 41 chr4 26999552 26999895 -175328452 + L2 LINE L2 2931 3272 0 2093 123 0 0 chr4 27000144 27000446 -175327901 + AluSx SINE Alu 5 306 -6 376 261 48 0 chr4 27000769 27000887 -175327460 - MIR SINE MIR -60 148 65 685 262 89 11 chr4 27000973 27001164 -175327183 - MIR SINE MIR -11 251 46 771 182 62 17 chr4 27001183 27001359 -175326988 - MER53 DNA DNA -4 185 2 2326 122 42 14 chr4 27002239 27002593 -175325754 + THE1B LTR MaLR 1 364 0 554 273 94 28 chr4 27002616 27002961 -175325386 - MLT1J2 LTR MaLR -8 401 54 1317 148 15 38 chr4 27003124 27003273 -175325074 + L1MB3 LINE L1 5925 6067 -116 2365 107 11 29 chr4 27003273 27003655 -175324692 - THE1C LTR MaLR 0 375 1 1317 148 15 38 chr4 27003655 27003768 -175324579 + L1MB3 LINE L1 6067 6181 -2 414 0 0 0 chr4 27003777 27003823 -175324524 + (TA)n Simple_repeat Simple_repeat 1 46 0 607 234 17 17 chr4 27004166 27004341 -175324006 + MER5B DNA MER1_type 4 178 0 283 310 101 8 chr4 27004379 27004508 -175323839 + MIR SINE MIR 9 149 -113 583 290 43 6 chr4 27005655 27005817 -175322530 + MIR SINE MIR 84 251 -11 360 267 114 0 chr4 27006316 27006421 -175321926 + MER5B DNA MER1_type 5 121 -57 971 148 0 0 chr4 27006422 27006608 -175321739 - AluSg/x SINE Alu 0 320 135 195 227 23 0 chr4 27006608 27006652 -175321695 + MER5B DNA MER1_type 112 156 -22 339 113 0 0 chr4 27006774 27006827 -175321520 + (GGAA)n Simple_repeat Simple_repeat 4 56 0 510 231 70 48 chr4 27007364 27007696 -175320651 + MLT1H LTR MaLR 73 453 -96 1855 149 62 37 chr4 27007696 27008051 -175320296 - THE1B LTR MaLR 0 364 1 510 231 70 48 chr4 27008051 27008147 -175320200 + MLT1H LTR MaLR 453 545 -4 789 192 31 92 chr4 27008307 27008536 -175319811 + Charlie4 DNA MER1_type 1 215 -1746 * 914 208 38 0 chr4 27008535 27008747 -175319600 + Charlie4 DNA MER1_type 1742 1961 0 801 251 15 5 chr4 27009117 27009312 -175319035 - MIR SINE MIR 0 262 66 563 150 24 203 chr4 27009330 27009537 -175318810 + MER5B DNA MER1_type 1 170 -8 2797 144 19 0 chr4 27010007 27010423 -175317924 + MSTB LTR MaLR 1 424 -2 344 143 18 0 chr4 27010566 27010622 -175317725 - LTR40a LTR ERVL -2 517 461 1329 130 0 5 chr4 27010622 27010814 -175317533 + AluSx SINE Alu 1 191 -121 1227 226 112 25 chr4 27010849 27011243 -175317104 - LTR40c LTR ERVL -37 428 1 455 283 110 21 chr4 27011254 27011445 -175316902 + L2 LINE L2 3106 3313 0 775 219 6 12 chr4 27011841 27012013 -175316334 + MIR SINE MIR 55 224 -38 2234 170 66 25 chr4 27012253 27012694 -175315653 - LTR2B LTR ERV1 0 490 32 409 174 221 74 chr4 27012998 27013147 -175315200 - MIR SINE MIR -42 220 50 1821 181 132 50 chr4 27013162 27013274 -175315073 + MLT1D LTR MaLR 5 106 -399 2034 100 0 4 chr4 27013274 27013555 -175314792 - AluSg SINE Alu -23 287 8 1821 181 132 50 chr4 27013555 27013905 -175314442 + MLT1D LTR MaLR 106 505 0 644 261 206 9 chr4 27014072 27014290 -175314057 + MIR SINE MIR 2 262 0 963 122 0 0 chr4 27014311 27014458 -175313889 - AluJb SINE Alu -2 310 164 530 168 0 137 chr4 27015064 27015195 -175313152 + MER81 DNA DNA 2 114 0 264 276 94 16 chr4 27015453 27015580 -175312767 - MLT1L LTR MaLR -13 602 466 634 231 26 6 chr4 27015924 27016080 -175312267 + MER5B DNA MER1_type 3 161 -17 813 209 110 16 chr4 27016092 27016283 -175312064 - MER3 DNA MER1_type 0 209 1 681 312 32 12 chr4 27016374 27016627 -175311720 + MIR SINE MIR 2 259 -3 203 237 85 0 chr4 27016953 27017012 -175311335 + MIR SINE MIR 85 148 -60 411 38 0 0 chr4 27018170 27018223 -175310124 + (GA)n Simple_repeat Simple_repeat 2 54 0 656 284 5 5 chr4 27018419 27018609 -175309738 + MIR SINE MIR 23 212 -50 1692 175 0 3 chr4 27018801 27019087 -175309260 + AluJo SINE Alu 1 285 -27 694 236 50 16 chr4 27019461 27019643 -175308704 - MER5A DNA MER1_type -1 188 1 1666 161 7 3 chr4 27020055 27020340 -175308007 + AluJo SINE Alu 1 286 -26 435 212 179 57 chr4 27020504 27020821 -175307526 - MLT1H LTR MaLR 0 590 151 2144 158 40 21 chr4 27020850 27021279 -175307068 - LTR56 LTR ERV1 0 445 9 307 230 167 32 chr4 27021284 27021410 -175306937 + LTR50 LTR ERVL 154 296 -499 742 212 161 43 chr4 27021412 27021631 -175306716 + LTR50 LTR ERVL 503 758 -37 2080 126 0 0 chr4 27021631 27021933 -175306414 + AluSx SINE Alu 1 302 -10 742 212 161 43 chr4 27021933 27021968 -175306379 + LTR50 LTR ERVL 758 787 -8 573 259 98 92 chr4 27021997 27022465 -175305882 - MLT1L LTR MaLR -22 593 123 2569 132 47 0 chr4 27023343 27023752 -175304595 + MSTA LTR MaLR 1 428 0 205 95 24 24 chr4 27023872 27023914 -175304433 + (TATATG)n Simple_repeat Simple_repeat 5 46 0 281 164 100 0 chr4 27023971 27024081 -175304266 + (TA)n Simple_repeat Simple_repeat 1 121 0 2183 82 10 0 chr4 27024127 27024421 -175303926 - AluSg1 SINE Alu -12 297 1 195 302 0 0 chr4 27024475 27024518 -175303829 - MIR SINE MIR -164 98 56 197 347 116 16 chr4 27025827 27025948 -175302399 - MER5A DNA MER1_type -3 186 54 396 228 86 41 chr4 27026513 27026710 -175301637 + L1ME4a LINE L1 5463 5668 -453 203 365 24 0 chr4 27026731 27026816 -175301531 - L2 LINE L2 -1 3312 3226 274 317 0 0 chr4 27026875 27026979 -175301368 + L1ME4a LINE L1 5721 5824 -297 805 161 0 0 chr4 27026985 27027115 -175301232 + AluJo/FLAM SINE Alu 2 131 -171 1826 99 92 0 chr4 27027117 27027379 -175300968 + AluSg SINE Alu 1 286 -24 27 0 0 0 chr4 27027388 27027415 -175300932 + AT_rich Low_complexity Low_complexity 1 27 0 1978 147 0 0 chr4 27027424 27027730 -175300617 + AluSx SINE Alu 1 306 -6 329 245 185 46 chr4 27027758 27027974 -175300373 + L1ME4a LINE L1 5850 6095 -26 954 93 11 33 chr4 27028027 27028210 -175300137 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 356 0 0 22 chr4 27028211 27028256 -175300091 + (GAAAA)n Simple_repeat Simple_repeat 1 44 0 183 156 0 0 chr4 27029547 27029579 -175298768 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 2012 194 13 18 chr4 27029631 27030023 -175298324 - MLT2D LTR ERVL -14 400 11 821 230 0 0 chr4 27030040 27030218 -175298129 - L1PB4 LINE L1 -2 6154 5977 467 312 113 23 chr4 27031264 27031485 -175296862 - MIR SINE MIR -2 260 20 1985 144 0 3 chr4 27031518 27031830 -175296517 + AluSx SINE Alu 1 311 -1 757 96 16 8 chr4 27031830 27031955 -175296392 + (GGAA)n Simple_repeat Simple_repeat 2 127 0 383 291 16 16 chr4 27031979 27032106 -175296241 - MER5B DNA MER1_type -51 127 1 216 0 0 0 chr4 27032733 27032757 -175295590 + (A)n Simple_repeat Simple_repeat 1 24 0 348 24 0 0 chr4 27033042 27033083 -175295264 + (TTTTG)n Simple_repeat Simple_repeat 5 45 0 459 339 192 32 chr4 27033422 27033917 -175294430 - L3 LINE CR1 -970 607 34 655 203 165 0 chr4 27034094 27034252 -175294095 - MIR SINE MIR -77 185 2 2828 143 26 0 chr4 27034664 27035119 -175293228 + MLT1C LTR MaLR 1 467 0 1735 181 0 0 chr4 27035699 27036002 -175292345 + AluJo SINE Alu 1 303 -9 294 314 16 33 chr4 27036012 27036133 -175292214 + GA-rich Low_complexity Low_complexity 2 120 0 555 185 161 19 chr4 27036254 27036416 -175291931 - MER46C DNA MER2_type -127 211 27 484 324 44 5 chr4 27037045 27037228 -175291119 + MIR SINE MIR 11 200 -62 355 157 0 0 chr4 27037897 27037948 -175290399 - MLT1J LTR MaLR -202 309 259 409 282 87 32 chr4 27038037 27038239 -175290108 + MLT1H1 LTR MaLR 48 264 -326 2041 110 31 0 chr4 27038283 27038575 -175289772 + AluSq SINE Alu 1 301 -12 621 299 40 5 chr4 27038674 27038875 -175289472 + MIR SINE MIR 17 224 -38 244 237 39 135 chr4 27038922 27039078 -175289269 + L2 LINE L2 3118 3258 -14 1150 274 60 62 chr4 27039111 27039612 -175288735 - MLT1J LTR MaLR -6 505 6 494 232 32 24 chr4 27040713 27040838 -175287509 - MIR SINE MIR -48 214 89 281 283 18 18 chr4 27040984 27041097 -175287250 - MIR3 SINE MIR -2 206 94 289 348 99 25 chr4 27041395 27041556 -175286791 - MIR SINE MIR -29 233 61 1613 164 85 35 chr4 27041566 27041884 -175286463 + MER58B DNA MER1_type 4 337 -4 540 219 152 44 chr4 27044842 27045184 -175283163 + L1MC5 LINE L1 7547 7925 -36 511 249 200 24 chr4 27045600 27045805 -175282542 - MIR SINE MIR 0 262 22 408 304 88 11 chr4 27046180 27046361 -175281986 - LTR16A LTR ERVL -6 444 250 187 344 0 16 chr4 27046556 27046617 -175281730 - L2 LINE L2 -526 2788 2729 509 226 73 37 chr4 27046669 27046833 -175281514 - L2 LINE L2 -2 3311 3142 396 240 260 0 chr4 27046847 27046993 -175281354 + MER5A DNA MER1_type 4 187 -2 1557 213 76 126 chr4 27047042 27047955 -175280392 - L2 LINE L2 -226 3087 2223 394 302 127 21 chr4 27048402 27048591 -175279756 - MIR SINE MIR -4 258 50 32 26 0 0 chr4 27048978 27049017 -175279330 + AT_rich Low_complexity Low_complexity 1 39 0 29 28 0 0 chr4 27049964 27050000 -175278347 + AT_rich Low_complexity Low_complexity 1 36 0 246 222 0 0 chr4 27051481 27051535 -175276812 + MER103 DNA DNA 48 101 -65 1108 149 85 0 chr4 27052184 27052385 -175275962 - MER20 DNA MER1_type -1 218 1 810 145 8 0 chr4 27055794 27055911 -175272436 - AluJb SINE Alu -194 118 1 544 271 159 62 chr4 27056529 27057235 -175271112 + L2 LINE L2 2521 3283 -30 316 135 37 0 chr4 27057347 27057411 -175270936 + FLAM SINE Alu 63 107 -26 21 82 0 0 chr4 27057461 27057510 -175270837 + AT_rich Low_complexity Low_complexity 1 49 0 1752 107 8 4 chr4 27058296 27058538 -175269809 + AluSx SINE Alu 1 243 -69 680 59 0 0 chr4 27058538 27058623 -175269724 - AluSq/x SINE Alu -204 108 24 714 266 62 17 chr4 27061815 27062058 -175266289 + MIR SINE MIR 6 256 -6 1861 154 3 35 chr4 27062788 27063107 -175265240 + AluJb SINE Alu 1 309 -3 711 197 0 16 chr4 27063154 27063276 -175265071 + FLAM_A SINE Alu 2 121 -12 297 0 0 0 chr4 27063276 27063309 -175265038 + (TG)n Simple_repeat Simple_repeat 2 34 0 254 311 68 0 chr4 27063412 27063486 -175264861 - L2 LINE L2 -1 3271 3193 15728 128 10 2 chr4 27063782 27067178 -175261169 + L1PA10 LINE L1 2746 6155 -13 828 110 0 25 chr4 27067306 27067424 -175260923 + FLAM_C SINE Alu 14 128 -15 27 0 0 0 chr4 27067424 27067451 -175260896 + AT_rich Low_complexity Low_complexity 1 27 0 226 309 4 64 chr4 27067725 27067836 -175260511 + MER5A DNA MER1_type 1 116 -73 216 257 276 19 chr4 27068139 27068244 -175260103 + L2 LINE L2 3182 3313 0 2063 95 4 0 chr4 27068340 27068604 -175259743 - AluSc SINE Alu -9 300 36 225 357 38 38 chr4 27068604 27068789 -175259558 - L2 LINE L2 -605 2709 2525 473 279 201 5 chr4 27069401 27069605 -175258742 + MIR SINE MIR 3 246 -16 349 225 34 0 chr4 27069717 27069806 -175258541 + L2 LINE L2 1912 2003 -1311 1621 199 10 0 chr4 27069806 27070102 -175258245 - MER2 DNA MER2_type 0 345 47 2258 225 190 26 chr4 27070117 27070950 -175257397 + L2 LINE L2 2015 3065 -248 2165 113 0 0 chr4 27070950 27071243 -175257104 + AluSx SINE Alu 1 293 -19 2258 225 190 26 chr4 27071243 27071519 -175256828 + L2 LINE L2 3065 3295 -18 1323 173 72 36 chr4 27072152 27072588 -175255759 - L1ME1 LINE L1 -6 6160 5342 2153 83 45 3 chr4 27073014 27073302 -175255045 + AluSg SINE Alu 1 300 -10 521 145 65 16 chr4 27074155 27074279 -175254068 + L1MA8 LINE L1 6150 6279 -12 238 276 29 57 chr4 27074392 27074497 -175253850 - MIR SINE MIR -6 256 155 985 263 219 19 chr4 27075707 27076378 -175251969 + L2 LINE L2 2489 3308 -5 28 79 0 0 chr4 27076706 27076769 -175251578 + AT_rich Low_complexity Low_complexity 1 63 0 425 278 116 37 chr4 27076863 27077026 -175251321 + MIR SINE MIR 28 214 -48 2631 46 0 3 chr4 27077026 27077332 -175251015 + AluY SINE Alu 1 305 -6 425 278 116 37 chr4 27077332 27077384 -175250963 + MIR SINE MIR 214 260 -2 1206 157 9 9 chr4 27077583 27077812 -175250535 + L1MA4A LINE L1 6063 6291 -12 1645 159 10 30 chr4 27078019 27078321 -175250026 - AluY SINE Alu -15 296 1 458 254 33 16 chr4 27078887 27079009 -175249338 + MLT1K LTR MaLR 465 588 0 517 271 141 17 chr4 27079305 27079482 -175248865 - L2 LINE L2 0 3313 3115 495 216 39 20 chr4 27079484 27079637 -175248710 - MER104 DNA Tc2 -18 162 7 1712 151 68 4 chr4 27079679 27079957 -175248390 + AluJb SINE Alu 1 296 -16 438 329 96 10 chr4 27080162 27080417 -175247930 - L2 LINE L2 -271 3042 2750 22 103 0 0 chr4 27081228 27081306 -175247041 + AT_rich Low_complexity Low_complexity 1 78 0 24 0 0 0 chr4 27083564 27083588 -175244759 + AT_rich Low_complexity Low_complexity 1 24 0 2554 42 0 13 chr4 27085376 27085683 -175242664 + AluY SINE Alu 1 303 -8 2352 83 0 13 chr4 27086006 27086319 -175242028 + AluY SINE Alu 1 309 -2 513 207 44 30 chr4 27086755 27086927 -175241420 + MLT1F LTR MaLR 13 198 -351 * 623 227 81 22 chr4 27086921 27087106 -175241241 + MLT1F LTR MaLR 347 542 0 2324 72 0 3 chr4 27087123 27087428 -175240919 - AluY SINE Alu -7 304 1 577 116 21 0 chr4 27087574 27087669 -175240678 - L1M4 LINE L1 -748 5436 5340 1692 174 3 10 chr4 27087670 27087963 -175240384 + AluJo SINE Alu 1 291 -21 746 239 75 43 chr4 27088050 27088238 -175240109 - MIR SINE MIR -49 213 20 756 234 87 64 chr4 27088639 27088886 -175239461 + MLT1K LTR MaLR 260 517 -71 2339 102 0 0 chr4 27088886 27089190 -175239157 - AluSg1 SINE Alu -5 304 1 756 234 87 64 chr4 27089190 27089254 -175239093 + MLT1K LTR MaLR 517 578 -10 825 158 23 0 chr4 27089293 27089426 -175238921 - FRAM SINE Alu -5 171 36 1480 182 22 4 chr4 27089513 27089782 -175238565 + AluJo SINE Alu 1 274 -38 1224 120 0 0 chr4 27089885 27090052 -175238295 + AluSg/x SINE Alu 129 295 -17 1662 253 37 6 chr4 27090328 27090358 -175237989 - L1ME1 LINE L1 0 6166 6138 2064 135 0 0 chr4 27090358 27090647 -175237700 - AluSg SINE Alu -21 289 1 1662 253 37 6 chr4 27090647 27091098 -175237249 - L1ME1 LINE L1 -28 6138 5670 1177 122 0 17 chr4 27091099 27091271 -175237076 - AluSg/x SINE Alu -9 301 133 1230 228 56 0 chr4 27091271 27091574 -175236773 - L1ME1 LINE L1 -475 5691 5372 1455 201 101 16 chr4 27091621 27092031 -175236316 - MER114 LTR ERV -76 572 123 1973 133 38 62 chr4 27092031 27092431 -175235916 - MLT1B LTR MaLR 0 390 1 1455 201 101 16 chr4 27092431 27092448 -175235899 - MER114 LTR ERV -525 123 109 298 208 134 59 chr4 27092688 27092890 -175235457 - L1ME4a LINE L1 -2 6119 5903 305 158 48 26 chr4 27092906 27092996 -175235351 - L1MA9 LINE L1 -24 6267 6169 1078 137 11 0 chr4 27093071 27093246 -175235101 + AluSq SINE Alu 137 313 0 2261 116 0 0 chr4 27093900 27094202 -175234145 - AluSx SINE Alu -10 302 1 249 108 0 0 chr4 27094205 27094242 -175234105 + (TTC)n Simple_repeat Simple_repeat 2 38 0 25 51 0 0 chr4 27095258 27095297 -175233050 + AT_rich Low_complexity Low_complexity 1 39 0 2061 117 0 13 chr4 27095635 27095943 -175232404 + AluSx SINE Alu 1 304 -8 275 0 29 0 chr4 27096633 27096668 -175231679 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 243 241 113 120 chr4 27097045 27097311 -175231036 + L2 LINE L2 3050 3313 0 1857 253 64 19 chr4 27097325 27097902 -175230445 + LTR26 LTR ERV1 1 603 0 1623 171 146 22 chr4 27098029 27098398 -175229949 - MER63B DNA MER1_type -21 415 1 281 288 198 27 chr4 27098487 27098598 -175229749 + L2 LINE L2 3137 3266 -6 281 298 79 0 chr4 27099262 27099376 -175228971 - MIR SINE MIR -71 191 69 277 219 16 31 chr4 27099376 27099440 -175228907 + MLT1L LTR MaLR 1 63 -552 869 175 0 25 chr4 27099502 27099662 -175228685 - AluJb SINE Alu -19 293 138 472 289 41 91 chr4 27099697 27100039 -175228308 + MLT1L LTR MaLR 197 521 -94 2133 99 7 26 chr4 27100097 27100401 -175227946 - AluSx SINE Alu -14 298 1 1357 224 62 9 chr4 27100439 27100778 -175227569 + L1ME3 LINE L1 5581 5937 -225 516 102 20 61 chr4 27100781 27100879 -175227468 + THE1C LTR MaLR 199 292 -83 864 214 43 51 chr4 27101154 27101388 -175226959 + L1ME3 LINE L1 5925 6156 -6 486 254 77 86 chr4 27101475 27101620 -175226727 - MIR SINE MIR -49 213 69 2137 130 3 3 chr4 27101620 27101919 -175226428 - AluSx SINE Alu -13 299 1 486 254 77 86 chr4 27101919 27101982 -175226365 - MIR SINE MIR -193 69 7 875 153 0 29 chr4 27102089 27102226 -175226121 + FLAM_C SINE Alu 1 133 0 389 264 166 5 chr4 27102261 27102454 -175225893 + L1ME4a LINE L1 5684 5907 -214 1923 199 5 5 chr4 27102538 27102940 -175225407 - L1PB1 LINE L1 -1640 4506 4105 * 6636 134 6 2 chr4 27102939 27104568 -175223779 + L1PB1 LINE L1 4520 6151 0 258 279 93 16 chr4 27104793 27104922 -175223425 + L1ME4a LINE L1 5967 6105 -16 388 230 206 8 chr4 27105244 27105370 -175222977 - MER5B DNA MER1_type -2 176 26 329 269 74 67 chr4 27105997 27106146 -175222201 - MIR SINE MIR -106 156 7 240 111 0 0 chr4 27106866 27106902 -175221445 + (TCCA)n Simple_repeat Simple_repeat 2 37 0 247 227 173 40 chr4 27107116 27107266 -175221081 + L1ME4a LINE L1 5947 6116 -5 1737 167 3 7 chr4 27107414 27107696 -175220651 + AluJo SINE Alu 1 281 -31 447 68 0 0 chr4 27107707 27107722 -175220625 + (CA)n Simple_repeat Simple_repeat 1 74 0 447 68 0 0 chr4 27107722 27107781 -175220566 + (CA)n Simple_repeat Simple_repeat 2 60 0 2505 151 5 3 chr4 27107849 27108239 -175220108 + MER89 LTR ERV1 167 557 -2 2078 135 7 0 chr4 27108400 27108703 -175219644 - AluSx SINE Alu -7 305 1 196 194 0 0 chr4 27108868 27108904 -175219443 + L2 LINE L2 3195 3230 -83 343 280 182 15 chr4 27109265 27109397 -175218950 + MIR SINE MIR 39 192 -70 1706 156 36 26 chr4 27109426 27109832 -175218515 + MER89 LTR ERV1 2 510 -49 4974 241 58 65 chr4 27109837 27111504 -175216843 + MER89-int LTR ERV1 1 1654 -5147 1658 197 67 11 chr4 27111544 27111919 -175216428 + MER89-int LTR ERV1 1650 2045 -4756 1473 214 84 49 chr4 27111920 27112290 -175216057 + MSTD LTR MaLR 1 383 -13 2173 226 39 22 chr4 27112293 27112784 -175215563 + MER89-int LTR ERV1 2033 2531 -4270 362 326 39 34 chr4 27112840 27113073 -175215274 + MER89-int LTR ERV1 139 372 -4275 2377 219 71 56 chr4 27113182 27113826 -175214521 + MER89-int LTR ERV1 2603 3256 -3545 1465 122 0 0 chr4 27113844 27114040 -175214307 + AluSg/x SINE Alu 88 283 -27 26 0 0 0 chr4 27114040 27114066 -175214281 + AT_rich Low_complexity Low_complexity 1 26 0 203 266 47 16 chr4 27114265 27114329 -175214018 + MER5A DNA MER1_type 124 189 0 2249 96 0 10 chr4 27114842 27115143 -175213204 + AluSq SINE Alu 1 298 -15 2145 253 53 42 chr4 27115163 27116148 -175212199 + L1M4 LINE L1 2204 3199 -2947 589 306 105 54 chr4 27116181 27116700 -175211647 + L2 LINE L2 2550 3123 -149 2113 128 3 0 chr4 27116700 27116997 -175211350 - AluSx SINE Alu -13 299 2 589 306 105 54 chr4 27116997 27117153 -175211194 + L2 LINE L2 3123 3270 -2 300 328 38 23 chr4 27117968 27118099 -175210248 + MIR SINE MIR 22 154 -108 3314 117 54 14 chr4 27118547 27119067 -175209280 - LTR38B LTR ERV1 -12 598 58 611 256 19 25 chr4 27120263 27120423 -175207924 + MIR SINE MIR 15 173 -89 1898 143 3 7 chr4 27120461 27120754 -175207593 + AluJo SINE Alu 1 292 -20 778 278 78 46 chr4 27120964 27121075 -175207272 + MLT1H LTR MaLR 123 229 -320 1875 177 55 3 chr4 27121075 27121402 -175206945 + MER2 DNA MER2_type 1 344 0 778 278 78 46 chr4 27121402 27121700 -175206647 + MLT1H LTR MaLR 229 545 -4 188 228 18 0 chr4 27121874 27121931 -175206416 + CT-rich Low_complexity Low_complexity 3 60 0 368 276 199 6 chr4 27122021 27122177 -175206170 + MER5A DNA MER1_type 3 188 -1 246 32 0 0 chr4 27122359 27122390 -175205957 + (TG)n Simple_repeat Simple_repeat 2 32 0 2041 134 3 3 chr4 27122976 27123275 -175205072 - AluJb SINE Alu -13 299 1 1132 227 174 8 chr4 27123646 27123811 -175204536 + L1MD2 LINE L1 5944 6080 -279 234 0 0 0 chr4 27123811 27123837 -175204510 + (CA)n Simple_repeat Simple_repeat 1 26 0 1132 227 174 8 chr4 27123837 27124028 -175204319 + L1MD2 LINE L1 6080 6359 0 1517 129 43 56 chr4 27124033 27124335 -175204012 + AluSx SINE Alu 1 298 -14 346 318 45 19 chr4 27124921 27125075 -175203272 + MER5A DNA MER1_type 9 166 -23 * 510 293 18 18 chr4 27124942 27125106 -175203241 - MER5A DNA MER1_type -22 167 4 192 77 0 0 chr4 27126196 27126222 -175202125 + (A)n Simple_repeat Simple_repeat 1 26 0 683 183 0 0 chr4 27126229 27126333 -175202014 + FLAM_A SINE Alu 21 124 -18 189 263 0 0 chr4 27126462 27126519 -175201828 - MIR SINE MIR -42 220 164 214 174 22 22 chr4 27126621 27126667 -175201680 - MIR SINE MIR -62 146 101 506 216 140 77 chr4 27126993 27127215 -175201132 + MLT1C LTR MaLR 5 240 -227 826 169 8 0 chr4 27127305 27127435 -175200912 + AluSg SINE Alu 1 131 -179 290 306 41 20 chr4 27127816 27127914 -175200433 - L2 LINE L2 0 3313 3214 1961 168 43 27 chr4 27128495 27128864 -175199483 + THE1C LTR MaLR 1 375 0 242 252 67 59 chr4 27129796 27129915 -175198432 - MER20 DNA MER1_type -18 201 82 918 150 13 7 chr4 27130141 27130294 -175198053 + FRAM SINE Alu 1 150 -26 339 248 111 0 chr4 27130337 27130454 -175197893 + MIR SINE MIR 48 177 -85 841 256 8 23 chr4 27130728 27130994 -175197353 + L1ME2 LINE L1 4936 5197 -949 1229 247 11 96 chr4 27131036 27131128 -175197219 + L1ME2 LINE L1 5743 5841 -323 2121 112 17 17 chr4 27131128 27131424 -175196923 + AluSx SINE Alu 3 298 -14 2397 94 0 0 chr4 27131424 27131722 -175196625 + AluSg SINE Alu 1 298 -12 1229 247 11 96 chr4 27131722 27131897 -175196450 + L1ME2 LINE L1 5840 5960 -204 1946 163 3 3 chr4 27131897 27132198 -175196149 + AluJb SINE Alu 1 301 -11 1229 247 11 96 chr4 27132198 27132377 -175195970 + L1ME2 LINE L1 5960 6153 -11 1449 178 82 4 chr4 27132704 27132985 -175195362 - AluJb SINE Alu -9 303 1 1748 138 55 38 chr4 27133409 27133699 -175194648 + AluSx SINE Alu 1 295 -17 306 50 0 0 chr4 27135369 27135409 -175192938 + (CA)n Simple_repeat Simple_repeat 2 41 0 307 340 61 14 chr4 27135469 27135616 -175192731 + MIR3 SINE MIR 7 160 -48 * 337 346 68 92 chr4 27135614 27135906 -175192441 - L2 LINE L2 0 3272 2988 5679 136 23 32 chr4 27135980 27136567 -175191780 - MER4D LTR ERV1 0 903 312 1849 148 3 20 chr4 27136567 27136864 -175191483 + AluJb SINE Alu 9 300 -12 2127 107 37 3 chr4 27136866 27137165 -175191182 + AluSq SINE Alu 1 309 -4 5679 136 23 32 chr4 27137165 27137485 -175190862 - MER4D LTR ERV1 -592 311 1 2942 133 25 11 chr4 27137485 27137959 -175190388 - LTR29 LTR ERV1 -5 617 137 528 327 20 39 chr4 27138137 27138391 -175189956 + MLT1L LTR MaLR 8 256 -359 2856 179 56 6 chr4 27138394 27138914 -175189433 - MER21A LTR ERV1 -14 917 372 1116 169 56 60 chr4 27138912 27139178 -175189169 - MER21A LTR ERV1 -666 265 1 * 1955 139 52 3 chr4 27139178 27139485 -175188862 + MLT2C1 LTR ERVL 25 346 -51 281 74 463 0 chr4 27139486 27139540 -175188807 - MADE1 DNA Mariner -1 79 1 270 344 79 16 chr4 27139601 27139790 -175188557 - L2 LINE L2 -437 2877 2677 1308 110 105 5 chr4 27139792 27140001 -175188346 + MER30 DNA MER1_type 1 230 0 1346 300 50 37 chr4 27140038 27140632 -175187715 + MLT1L LTR MaLR 8 609 -6 362 322 34 7 chr4 27140639 27140785 -175187562 - L2 LINE L2 -656 2658 2509 1778 192 92 32 chr4 27141671 27141956 -175186391 + MLT1C LTR MaLR 5 272 -195 1968 129 81 31 chr4 27141956 27142313 -175186034 - THE1C LTR MaLR 0 375 1 10541 120 13 55 chr4 27142314 27143393 -175184954 - THE1C-int LTR MaLR -1 1579 593 1905 100 8 8 chr4 27143393 27143652 -175184695 - AluSp SINE Alu -1 312 54 10541 120 13 55 chr4 27143652 27144219 -175184128 - THE1C-int LTR MaLR -987 593 3 1890 110 99 71 chr4 27144221 27144291 -175184056 - THE1C LTR MaLR 0 375 308 2086 124 7 20 chr4 27144291 27144589 -175183758 - AluSx SINE Alu -18 294 1 1890 110 99 71 chr4 27144589 27144883 -175183464 - THE1C LTR MaLR -67 308 1 1778 192 92 32 chr4 27144883 27145029 -175183318 + MLT1C LTR MaLR 272 467 0 1860 153 3 7 chr4 27145197 27145485 -175182862 - AluJb SINE Alu -25 287 1 36 62 0 0 chr4 27145596 27145660 -175182687 + AT_rich Low_complexity Low_complexity 1 64 0 180 311 0 0 chr4 27145768 27145813 -175182534 + L2 LINE L2 3213 3257 -15 526 266 8 31 chr4 27146050 27146178 -175182169 + MIR SINE MIR 25 149 -113 1183 124 0 0 chr4 27146445 27146626 -175181721 + AluSq SINE Alu 131 311 0 2185 136 0 132 chr4 27146671 27147170 -175181177 - Tigger2a DNA MER2_type -1 433 1 1422 197 114 57 chr4 27147226 27147395 -175180952 + MER110A LTR ERV1 22 180 -288 930 153 0 0 chr4 27147395 27147526 -175180821 + FLAM_C SINE Alu 1 131 -2 1422 197 114 57 chr4 27147526 27147777 -175180570 + MER110A LTR ERV1 180 466 -2 3081 167 65 0 chr4 27147790 27148316 -175180031 + MER68 LTR ERV1 3 562 0 282 378 91 0 chr4 27148676 27148819 -175179528 - L2 LINE L2 -206 3066 2911 554 283 47 33 chr4 27149032 27149157 -175179190 + MIR SINE MIR 13 144 -118 3220 69 0 0 chr4 27149157 27149532 -175178815 - THE1C LTR MaLR 0 375 1 554 283 47 33 chr4 27149532 27149618 -175178729 + MIR SINE MIR 144 227 -35 987 209 0 71 chr4 27150060 27150285 -175178062 + AluJo SINE Alu 3 211 -101 1658 191 17 0 chr4 27150388 27150682 -175177665 + AluJo SINE Alu 1 299 -13 767 196 38 119 chr4 27150882 27151173 -175177174 - MLT1D LTR MaLR -170 297 25 869 159 0 14 chr4 27151194 27151339 -175177008 + FLAM_C SINE Alu 1 143 0 880 198 12 77 chr4 27151381 27151629 -175176718 - LTR4 LTR ERV1 0 596 365 712 258 85 74 chr4 27151741 27152094 -175176253 - LTR4 LTR ERV1 -239 357 1 717 202 0 0 chr4 27152101 27152225 -175176122 + FRAM SINE Alu 41 164 -12 1418 110 19 0 chr4 27152415 27152624 -175175723 + LTR24C LTR ERV1 1 213 -422 * 2524 90 8 31 chr4 27152620 27152975 -175175372 - THE1B LTR MaLR -17 347 1 2090 139 82 31 chr4 27152975 27153328 -175175019 + LTR24C LTR ERV1 225 601 -34 2149 133 7 0 chr4 27153328 27153630 -175174717 + AluSx SINE Alu 1 304 -8 2090 139 82 31 chr4 27153630 27153665 -175174682 + LTR24C LTR ERV1 601 633 -2 207 296 61 76 chr4 27153773 27153905 -175174442 + L2 LINE L2 2925 3054 -218 502 263 43 62 chr4 27154188 27154397 -175173950 + MER21B LTR ERV1 508 712 -151 444 317 48 0 chr4 27154422 27154589 -175173758 + Charlie2b DNA MER1_type 233 407 -2455 322 242 0 0 chr4 27154612 27154678 -175173669 + Charlie2b DNA MER1_type 575 640 -2142 1237 209 92 31 chr4 27154706 27154792 -175173555 + Charlie2a DNA MER1_type 1466 1545 -1317 1522 176 23 33 chr4 27154792 27155093 -175173254 - AluJo SINE Alu -14 298 1 1237 209 92 31 chr4 27155093 27155703 -175172644 + Charlie2a DNA MER1_type 1545 2267 -595 2224 263 35 45 chr4 27155735 27156816 -175171531 + L1ME LINE L1 59 1127 -4953 2822 118 25 9 chr4 27156816 27157247 -175171100 + MER57-int LTR ERV1 3165 3602 -3935 2407 201 113 35 chr4 27157247 27157913 -175170434 - MER50 LTR ERV1 0 734 17 781 81 57 0 chr4 27157927 27158050 -175170297 + MER57-int LTR ERV1 3600 3729 -3808 1063 261 61 52 chr4 27158064 27158445 -175169902 + L1ME LINE L1 1174 1550 -4711 1987 145 60 23 chr4 27158445 27158796 -175169551 - THE1B LTR MaLR 0 364 1 1063 261 61 52 chr4 27158796 27159152 -175169195 + L1ME LINE L1 1550 1956 -4305 2175 125 7 0 chr4 27159152 27159449 -175168898 + AluSq SINE Alu 1 299 -14 1063 261 61 52 chr4 27159449 27159653 -175168694 + L1ME LINE L1 1956 2157 -4104 1351 108 0 6 chr4 27159659 27159835 -175168512 + AluSq SINE Alu 1 175 -138 1973 152 43 137 chr4 27159835 27160440 -175167907 - LTR34 LTR ERV1 -151 548 1 914 240 131 3 chr4 27160440 27160511 -175167836 + L1ME LINE L1 2825 2886 -3194 1541 182 6 59 chr4 27160511 27160835 -175167512 + AluJo SINE Alu 1 307 -5 914 240 131 3 chr4 27160835 27161121 -175167226 + L1ME LINE L1 2886 3228 -2852 221 202 173 0 chr4 27161124 27161228 -175167119 - L2 LINE L2 -76 3237 3116 186 43 0 0 chr4 27161412 27161435 -175166912 + (CCG)n Simple_repeat Simple_repeat 2 24 0 669 137 16 48 chr4 27163373 27163497 -175164850 + FLAM_C SINE Alu 8 127 -16 22 0 0 0 chr4 27163627 27163649 -175164698 + AT_rich Low_complexity Low_complexity 1 22 0 271 57 0 170 chr4 27163651 27163740 -175164607 + Alu SINE Alu 239 318 0 2126 110 0 10 chr4 27163753 27164044 -175164303 + AluSx SINE Alu 5 292 -20 278 328 86 0 chr4 27164718 27164834 -175163513 - MIR SINE MIR 0 262 137 1834 128 53 0 chr4 27164875 27165141 -175163206 - AluSq SINE Alu -33 280 1 358 125 0 0 chr4 27165171 27165219 -175163128 + Alu SINE Alu 1 48 -255 926 148 0 56 chr4 27165223 27165385 -175162962 + FRAM SINE Alu 12 164 -12 193 179 8 0 chr4 27165385 27165427 -175162920 - MIR SINE MIR -89 119 75 6882 93 182 50 chr4 27165916 27168161 -175160186 - Harlequin LTR ERV1 0 8399 505 839 155 22 84 chr4 27168159 27168481 -175159866 - Harlequin LTR ERV1 -5755 1141 840 * 36278 80 35 5 chr4 27168482 27173265 -175155082 - Harlequin LTR ERV1 -3455 4944 17 329 100 140 0 chr4 27173265 27173288 -175155059 - Harlequin LTR ERV1 -8331 68 39 4305 101 217 102 chr4 27173288 27174654 -175153693 - pTR5 LTR ERV1 0 2438 172 253 311 53 99 chr4 27174855 27175138 -175153209 - L2 LINE L2 -6 3266 2997 1982 151 7 0 chr4 27175191 27175482 -175152865 - AluJo SINE Alu -15 297 5 323 245 99 80 chr4 27175782 27175994 -175152353 - L2 LINE L2 -6 3307 3092 9974 65 13 62 chr4 27176296 27177736 -175150611 - SVA Other Other -3 1383 14 1765 106 12 4 chr4 27177746 27178002 -175150345 + L1PA12 LINE L1 5808 6065 -103 389 78 0 0 chr4 27178031 27178082 -175150265 + U2 snRNA snRNA 1 51 -137 693 84 84 0 chr4 27178082 27178189 -175150158 + L1PA13 LINE L1 6048 6163 0 1410 218 77 20 chr4 27178195 27178636 -175149711 - L2 LINE L2 -625 2689 2224 396 250 8 16 chr4 27178690 27178814 -175149533 - L2 LINE L2 -1845 1469 1347 1082 264 138 9 chr4 27178814 27179257 -175149090 - L2 LINE L2 -2091 1223 724 2178 94 3 10 chr4 27179296 27179619 -175148728 - AluSq SINE Alu 0 321 1 1729 156 7 20 chr4 27180103 27180405 -175147942 - AluJo SINE Alu -14 298 1 2002 107 43 0 chr4 27181272 27181552 -175146795 - AluSx SINE Alu -20 292 1 318 326 92 0 chr4 27181681 27181822 -175146525 - L2 LINE L2 0 3313 3160 2517 63 3 0 chr4 27181905 27182205 -175146142 - AluY SINE Alu -10 301 1 691 209 0 15 chr4 27183123 27183257 -175145090 - FLAM_A SINE Alu -1 132 1 507 174 0 31 chr4 27183306 27183404 -175144943 - AluJb SINE Alu -81 231 137 1727 185 24 0 chr4 27183414 27183711 -175144636 - AluJb SINE Alu -8 304 1 1760 171 13 26 chr4 27184551 27184856 -175143491 - AluJb SINE Alu -11 301 1 303 234 203 0 chr4 27184856 27184984 -175143363 + MIR SINE MIR 97 250 -12 2219 108 7 7 chr4 27185708 27186004 -175142343 - AluSx SINE Alu -16 296 1 27 0 0 0 chr4 27186010 27186037 -175142310 + AT_rich Low_complexity Low_complexity 1 27 0 25 51 0 0 chr4 27186063 27186102 -175142245 + AT_rich Low_complexity Low_complexity 1 39 0 587 61 12 0 chr4 27187119 27187201 -175141146 - AluY SINE Alu -227 84 2 2314 113 0 6 chr4 27187521 27187832 -175140515 - AluSg SINE Alu -1 309 1 373 227 118 0 chr4 27188130 27188249 -175140098 - L2 LINE L2 0 3313 3181 21 0 0 0 chr4 27189023 27189044 -175139303 + AT_rich Low_complexity Low_complexity 1 21 0 1827 157 7 14 chr4 27189049 27189343 -175139004 + AluJb SINE Alu 3 294 -18 1063 181 0 16 chr4 27189707 27189895 -175138452 + FAM SINE Alu 1 49 0 1010 170 19 0 chr4 27189906 27190065 -175138282 + FRAM SINE Alu 1 162 -14 2053 119 0 30 chr4 27191989 27192291 -175136056 - AluSx SINE Alu -19 293 1 1307 86 27 16 chr4 27192589 27192775 -175135572 + MER30 DNA MER1_type 43 230 0 675 259 12 6 chr4 27192810 27192980 -175135367 + MER5A DNA MER1_type 19 189 0 451 222 19 0 chr4 27193188 27193296 -175135051 + MIR SINE MIR 147 256 -6 303 28 0 0 chr4 27193560 27193591 -175134756 + (CA)n Simple_repeat Simple_repeat 1 67 0 303 28 0 0 chr4 27193591 27193627 -175134720 + (CA)n Simple_repeat Simple_repeat 2 37 0 846 158 0 0 chr4 27193824 27193957 -175134390 - FLAM_C SINE Alu 0 133 1 639 191 191 0 chr4 27194587 27194775 -175133572 + L1ME2 LINE L1 5804 6027 -137 314 218 13 0 chr4 27194790 27194868 -175133479 + L1MA10 LINE L1 6247 6325 -9 560 153 0 0 chr4 27194964 27195049 -175133298 + AluJ/FLAM SINE Alu 2 86 -226 1116 162 0 0 chr4 27195138 27195305 -175133042 + AluJb SINE Alu 131 297 -15 1857 135 94 15 chr4 27195837 27196177 -175132170 - THE1C LTR MaLR 0 375 9 23 0 0 0 chr4 27196619 27196642 -175131705 + AT_rich Low_complexity Low_complexity 1 23 0 26 50 0 0 chr4 27197054 27197094 -175131253 + AT_rich Low_complexity Low_complexity 1 40 0 1971 143 3 10 chr4 27197540 27197841 -175130506 + AluJb SINE Alu 1 299 -13 2403 97 3 0 chr4 27197864 27198172 -175130175 + AluSq SINE Alu 1 309 -4 395 251 152 81 chr4 27198530 27198937 -175129410 - L1M4 LINE L1 -3235 2911 2476 989 161 6 12 chr4 27199138 27199299 -175129048 - AluJo SINE Alu -32 280 121 189 147 0 0 chr4 27199677 27199711 -175128636 + (T)n Simple_repeat Simple_repeat 1 34 0 236 228 53 0 chr4 27199823 27199880 -175128467 + L2 LINE L2 3213 3272 0 * 344 345 92 16 chr4 27199879 27200358 -175127989 - L2 LINE L2 -1147 2167 1641 849 174 0 0 chr4 27200359 27200491 -175127856 + FRAM SINE Alu 1 132 -44 976 191 0 13 chr4 27200891 27201043 -175127304 + FRAM SINE Alu 2 151 -15 2433 80 0 7 chr4 27202306 27202608 -175125739 + AluSq SINE Alu 1 300 -13 1710 121 8 20 chr4 27202806 27203087 -175125260 + AluSx SINE Alu 36 313 0 676 227 195 16 chr4 27203282 27203590 -175124757 + MLT1J2 LTR MaLR 67 429 -21 485 138 43 32 chr4 27203747 27203841 -175124506 + AluJ/FLAM SINE Alu 2 96 -216 1674 150 19 0 chr4 27203944 27204244 -175124103 + AluJo SINE Alu 13 317 0 807 155 9 0 chr4 27204373 27204489 -175123858 + FLAM_C SINE Alu 2 118 -25 279 79 0 0 chr4 27204489 27204527 -175123820 + (CAAT)n Simple_repeat Simple_repeat 1 38 0 833 249 24 19 chr4 27204959 27205168 -175123179 + L2 LINE L2 3104 3313 0 321 89 0 0 chr4 27205350 27205395 -175122952 + (TG)n Simple_repeat Simple_repeat 2 46 0 2407 108 0 0 chr4 27207750 27208056 -175120291 - AluSx SINE Alu -6 306 1 1705 149 43 11 chr4 27209039 27209321 -175119026 + AluJo SINE Alu 4 294 -18 892 121 0 8 chr4 27209324 27209448 -175118899 + FLAM_C SINE Alu 1 123 -20 249 232 0 0 chr4 27209488 27209544 -175118803 + L1ME2 LINE L1 4006 4061 -2085 1468 214 51 37 chr4 27209546 27209966 -175118381 - MLT1D LTR MaLR -1 504 88 2659 210 105 50 chr4 27210020 27211103 -175117244 + L1ME2 LINE L1 4058 5293 -885 1895 136 36 0 chr4 27211103 27211382 -175116965 + AluSx SINE Alu 1 289 -23 2659 210 105 50 chr4 27211382 27211533 -175116814 + L1ME2 LINE L1 5293 5434 -744 1389 215 123 12 chr4 27211537 27211942 -175116405 + L1ME2 LINE L1 5594 6043 -121 3554 118 2 29 chr4 27211942 27212460 -175115887 - L1PA10 LINE L1 -9 6159 5656 2344 73 0 10 chr4 27212461 27212764 -175115583 + AluY SINE Alu 1 300 -11 1759 151 148 20 chr4 27213565 27213909 -175114438 + MLT1B LTR MaLR 1 388 -2 1489 139 5 0 chr4 27214095 27214311 -175114036 - AluSg/x SINE Alu -11 299 83 1660 154 7 25 chr4 27214324 27214628 -175113719 - AluJb SINE Alu 0 307 9 642 299 15 20 chr4 27214854 27215058 -175113289 - L1ME3A LINE L1 -287 5883 5681 1477 179 0 12 chr4 27215125 27215415 -175112932 + AluJb SINE Alu 43 312 0 323 266 50 0 chr4 27215471 27215590 -175112757 - L1ME1 LINE L1 -6 6164 6037 * 808 198 115 10 chr4 27215589 27215781 -175112566 + L1P3 LINE L1 8 219 -5656 908 234 15 54 chr4 27216216 27216477 -175111870 + L1P3 LINE L1 259 509 -5366 22410 177 14 17 chr4 27216485 27217080 -175111267 + L1P3 LINE L1 692 1287 -5174 180 77 0 0 chr4 27217080 27217106 -175111241 + (CAA)n Simple_repeat Simple_repeat 2 27 0 22410 177 14 17 chr4 27217106 27221025 -175107322 + L1P3 LINE L1 1287 5210 -1251 2134 109 0 55 chr4 27221140 27221469 -175106878 - AluSx SINE Alu -1 311 1 303 283 90 0 chr4 27221539 27221684 -175106663 - L1MC5 LINE L1 -542 7419 7262 4652 153 72 30 chr4 27221944 27222028 -175106319 - L1MA9 LINE L1 -22 6290 6211 234 0 0 0 chr4 27222028 27222054 -175106293 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 2115 102 29 0 chr4 27222054 27222328 -175106019 - AluSx SINE Alu -30 282 1 4652 153 72 30 chr4 27222328 27222361 -175105986 - L1MA9 LINE L1 -101 6211 6181 315 0 0 0 chr4 27222361 27222396 -175105951 + (TG)n Simple_repeat Simple_repeat 2 36 0 4652 153 72 30 chr4 27222396 27222438 -175105909 - L1MA9 LINE L1 -131 6181 6142 1707 201 0 10 chr4 27222438 27222752 -175105595 - AluJo SINE Alu -1 311 1 4652 153 72 30 chr4 27222752 27222782 -175105565 - L1MA9 LINE L1 -170 6142 6115 1714 189 3 25 chr4 27222782 27223100 -175105247 + AluJb SINE Alu 2 312 0 4652 153 72 30 chr4 27223100 27224382 -175103965 - L1MA9 LINE L1 -197 6115 4758 22 0 0 0 chr4 27224605 27224627 -175103720 + AT_rich Low_complexity Low_complexity 1 22 0 265 302 82 40 chr4 27224889 27225040 -175103307 + MIR SINE MIR 34 192 -67 2532 59 0 3 chr4 27226360 27226664 -175101683 - AluY SINE Alu -8 303 1 321 327 88 9 chr4 27226684 27226715 -175101632 - MIR SINE MIR -26 236 209 1499 261 54 56 chr4 27226715 27227233 -175101114 + LTR33 LTR ERVL 5 521 0 321 327 88 9 chr4 27227233 27227418 -175100929 - MIR SINE MIR -53 209 3 382 187 166 0 chr4 27227462 27227601 -175100746 - MER20B DNA MER1_type -30 753 592 571 236 81 0 chr4 27227602 27227725 -175100622 + MER7C DNA MER2_type 2 134 -468 953 226 3 132 chr4 27227725 27228043 -175100304 - AluSp SINE Alu -9 304 28 2944 135 11 19 chr4 27228043 27228518 -175099829 + MER7C DNA MER2_type 131 601 -1 2480 52 0 29 chr4 27228660 27228969 -175099378 - AluY SINE Alu -11 300 1 255 247 68 96 chr4 27229327 27229473 -175098874 + MLT1H LTR MaLR 406 547 -2 * 1409 256 97 11 chr4 27229473 27229917 -175098430 - MER20B DNA MER1_type -275 508 27 186 302 136 84 chr4 27229997 27230038 -175098309 - L2 LINE L2 -4 3268 3231 1579 156 28 45 chr4 27230038 27230326 -175098021 - AluJb SINE Alu -18 294 12 186 302 136 84 chr4 27230326 27230592 -175097755 - L2 LINE L2 -41 3231 2945 822 215 47 33 chr4 27230720 27230934 -175097413 - MIR SINE MIR -1 261 45 266 153 0 83 chr4 27231187 27231259 -175097088 + Charlie5 DNA MER1_type 2544 2609 -3 490 88 0 0 chr4 27231259 27231327 -175097020 - L1PB4 LINE L1 0 6156 6089 597 202 65 73 chr4 27231444 27231495 -175096852 - MLT1J LTR MaLR -22 489 439 2376 65 24 0 chr4 27231495 27231786 -175096561 - AluY SINE Alu -13 298 1 2172 122 3 6 chr4 27231786 27232097 -175096250 - AluSx SINE Alu -2 310 1 597 202 65 73 chr4 27232097 27232331 -175096016 - MLT1J LTR MaLR -70 441 166 386 199 160 51 chr4 27232341 27232497 -175095850 + LTR16A1 LTR ERVL 165 337 -120 719 196 119 55 chr4 27232532 27232767 -175095580 - MLT1C LTR MaLR -165 302 53 2138 123 3 3 chr4 27232824 27233124 -175095223 - AluSx SINE Alu -7 305 6 432 0 0 0 chr4 27233184 27233232 -175095115 + (CA)n Simple_repeat Simple_repeat 2 49 0 699 231 122 31 chr4 27234010 27234239 -175094108 - MLT1K LTR MaLR -1 587 338 423 275 78 78 chr4 27234349 27234535 -175093812 + MLT1H LTR MaLR 133 321 -228 1101 31 78 0 chr4 27234535 27234663 -175093684 - MER85 DNA T2_type -1 138 1 423 275 78 78 chr4 27234663 27234694 -175093653 + MLT1H LTR MaLR 320 350 -199 290 231 26 26 chr4 27234880 27234958 -175093389 - MLT1K LTR MaLR -477 111 34 2163 112 0 22 chr4 27235111 27235424 -175092923 + AluSg SINE Alu 3 308 -2 1360 179 108 54 chr4 27235515 27235940 -175092407 - LTR7 LTR ERV1 -2 448 1 242 226 19 0 chr4 27236581 27236634 -175091713 - MER4D LTR ERV1 -72 800 747 889 241 34 30 chr4 27236960 27237225 -175091122 - L1M4 LINE L1 -1380 4766 4501 2459 64 0 49 chr4 27237226 27237553 -175090794 - AluY SINE Alu 0 311 1 845 144 0 0 chr4 27237589 27237714 -175090633 - FLAM_C SINE Alu -18 125 1 834 220 57 40 chr4 27237719 27238015 -175090332 - L1M4 LINE L1 -1663 4483 4183 1457 156 42 26 chr4 27239285 27239592 -175088755 + AluJb SINE Alu 1 312 0 1670 207 23 20 chr4 27240119 27240472 -175087875 - MLT1A1 LTR MaLR -11 354 1 354 212 92 13 chr4 27240694 27240830 -175087517 - L1M2 LINE L1 -358 5816 5666 4891 176 34 6 chr4 27241186 27241393 -175086954 - L1MB4 LINE L1 -1 6179 5979 1790 161 3 25 chr4 27241393 27241709 -175086638 - AluJo SINE Alu -3 309 1 4891 176 34 6 chr4 27241709 27242613 -175085734 - L1MB4 LINE L1 -201 5979 5040 317 333 74 0 chr4 27242822 27242957 -175085390 + MER117 DNA MER1_type 5 149 -48 2166 121 23 0 chr4 27243120 27243425 -175084922 + AluSx SINE Alu 1 312 0 243 282 230 0 chr4 27243430 27243604 -175084743 - MIR SINE MIR -17 245 32 566 218 56 0 chr4 27244131 27244273 -175084074 - L1MB4 LINE L1 -2426 3720 3571 2010 147 3 0 chr4 27244360 27244653 -175083694 - AluSx SINE Alu -18 294 1 2004 141 0 7 chr4 27245072 27245369 -175082978 + AluJo SINE Alu 1 295 -17 1455 197 45 194 chr4 27245378 27246043 -175082304 + L1ME1 LINE L1 205 968 -5595 528 208 108 15 chr4 27246043 27246173 -175082174 - MER58B DNA MER1_type -3 338 197 1455 197 45 194 chr4 27246173 27246394 -175081953 + L1ME1 LINE L1 968 1220 -5343 1976 148 3 7 chr4 27246394 27246692 -175081655 + AluSx SINE Alu 6 302 -10 1455 197 45 194 chr4 27246692 27246846 -175081501 + L1ME1 LINE L1 1220 1158 -5405 2511 75 0 3 chr4 27246846 27247152 -175081195 + AluSc SINE Alu 1 305 -4 1455 197 45 194 chr4 27247152 27247306 -175081041 + L1ME1 LINE L1 1157 1332 -5231 236 244 145 8 chr4 27247340 27247471 -175080876 + L1ME1 LINE L1 1292 1440 -4944 1856 179 3 0 chr4 27247472 27247774 -175080573 - AluJb SINE Alu -9 303 1 1943 155 0 3 chr4 27247799 27248096 -175080251 + AluJb SINE Alu 3 298 -14 2082 136 0 0 chr4 27248140 27248434 -175079913 + AluSx SINE Alu 1 294 -18 4587 196 36 123 chr4 27248521 27248898 -175079449 + L1ME1 LINE L1 3807 4215 -2187 1670 178 27 7 chr4 27248898 27249196 -175079151 + AluJo SINE Alu 1 304 -8 4587 196 36 123 chr4 27249196 27250199 -175078148 + L1ME1 LINE L1 4215 5304 -1098 1858 228 66 29 chr4 27250199 27250686 -175077661 + MLT1D LTR MaLR 1 505 0 4587 196 36 123 chr4 27250686 27251130 -175077217 + L1ME1 LINE L1 5304 5785 -617 1662 114 18 0 chr4 27251130 27251357 -175076990 + AluSx SINE Alu 17 247 -65 4587 196 36 123 chr4 27251357 27251410 -175076937 + L1ME1 LINE L1 5785 5841 -561 2397 36 23 7 chr4 27251410 27251712 -175076635 - AluY SINE Alu -4 307 1 4587 196 36 123 chr4 27251712 27252360 -175075987 + L1ME1 LINE L1 5841 6095 -307 2163 108 9 29 chr4 27252360 27252675 -175075672 + AluSc SINE Alu 1 309 0 4587 196 36 123 chr4 27252675 27252954 -175075393 + L1ME1 LINE L1 6095 6397 -5 313 277 7 57 chr4 27253006 27253147 -175075200 - MER94 DNA DNA 0 134 1 553 246 95 40 chr4 27253299 27253551 -175074796 + L1MC5 LINE L1 6968 7233 -728 351 62 13 153 chr4 27253809 27253871 -175074476 - L1MB8 LINE L1 0 6178 6125 2061 151 0 10 chr4 27253871 27254176 -175074171 + AluSx SINE Alu 1 302 -10 351 62 13 153 chr4 27254176 27254198 -175074149 - L1MB8 LINE L1 -53 6125 6102 1019 149 16 16 chr4 27254251 27254439 -175073908 + L1MB7 LINE L1 5905 6092 -92 443 191 0 0 chr4 27254439 27254528 -175073819 + AluJ/FRAM SINE Alu 221 309 -3 666 260 177 7 chr4 27254571 27254871 -175073476 + HsTC2 DNA Tc2 4 354 -1544 1010 197 167 23 chr4 27254874 27255016 -175073331 + AluJo SINE Alu 1 121 -284 2178 96 0 0 chr4 27255016 27255317 -175073030 + AluSx SINE Alu 1 301 0 1010 197 167 23 chr4 27255317 27255540 -175072807 + AluJo SINE Alu 121 405 0 836 206 21 5 chr4 27255562 27255756 -175072591 + HsTC2 DNA Tc2 395 591 -1307 2565 49 0 7 chr4 27257278 27257586 -175070761 - AluY SINE Alu -5 306 1 222 37 0 0 chr4 27257718 27257745 -175070602 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 1584 107 47 0 chr4 27258059 27258274 -175070073 + AluSg/x SINE Alu 76 300 -10 1405 195 62 0 chr4 27260796 27261068 -175067279 - AluJo SINE Alu -13 299 11 2072 132 0 3 chr4 27261122 27261411 -175066936 + AluSx SINE Alu 1 288 -24 1964 150 3 3 chr4 27261436 27261730 -175066617 + AluJb SINE Alu 1 294 -18 833 179 70 35 chr4 27261975 27262316 -175066031 - L1MB7 LINE L1 -19 6165 5781 2030 145 0 0 chr4 27262445 27262742 -175065605 - AluSx SINE Alu -13 299 3 846 251 118 5 chr4 27262753 27262956 -175065391 - MIR SINE MIR -14 248 23 729 280 34 45 chr4 27263177 27263531 -175064816 - MLT1K LTR MaLR -63 525 176 1891 163 0 10 chr4 27264058 27264352 -175063995 - AluJb SINE Alu -21 291 1 2679 146 54 14 chr4 27264368 27264868 -175063479 - L1MB7 LINE L1 -19 6165 5646 2118 127 26 47 chr4 27264868 27265255 -175063092 - MLT1B LTR MaLR -5 385 7 3928 172 88 4 chr4 27265256 27265831 -175062516 - L1MB7 LINE L1 -538 5646 5120 2325 78 10 0 chr4 27265831 27266124 -175062223 - AluY SINE Alu -15 296 1 3928 172 88 4 chr4 27266124 27266740 -175061607 - L1MB7 LINE L1 -1064 5120 4358 772 175 115 11 chr4 27266788 27266971 -175061376 + Tigger2a DNA MER2_type 1 202 -232 480 157 22 22 chr4 27266971 27267060 -175061287 - FLAM SINE Alu -17 126 38 1085 111 116 28 chr4 27267060 27267208 -175061139 + Tigger2a DNA MER2_type 200 374 -2334 2277 156 45 26 chr4 27267208 27267626 -175060721 + MSTB LTR MaLR 1 426 0 1085 111 116 28 chr4 27267626 27267693 -175060654 + Tigger2a DNA MER2_type 374 434 0 501 170 20 0 chr4 27267696 27267796 -175060551 - L1MB2 LINE L1 -28 6143 6042 329 261 148 21 chr4 27269258 27269400 -175058947 + L3b LINE CR1 1243 1402 -181 951 264 46 4 chr4 27269439 27269678 -175058669 - MIR SINE MIR 0 262 14 346 307 193 8 chr4 27269963 27270201 -175058146 + L1MC/D LINE L1 5260 5541 -2267 2794 24 9 0 chr4 27270220 27270603 -175057744 + L1PA3 LINE L1 5791 6176 0 1824 182 0 0 chr4 27270763 27271059 -175057288 - AluJb SINE Alu -16 296 1 292 327 101 30 chr4 27271765 27272068 -175056279 + L2 LINE L2 2749 3069 -203 570 168 0 0 chr4 27272100 27272201 -175056146 + L1MC1 LINE L1 6233 6333 0 336 238 104 74 chr4 27272270 27272539 -175055808 + Charlie7 DNA MER1_type 472 748 -1864 565 193 77 50 chr4 27272544 27272725 -175055622 + Charlie7 DNA MER1_type 2108 2293 -319 23 0 0 0 chr4 27274265 27274288 -175054059 + AT_rich Low_complexity Low_complexity 1 23 0 2002 143 24 0 chr4 27274379 27274715 -175053632 - MER2 DNA MER2_type 0 344 1 498 244 17 17 chr4 27275870 27275989 -175052358 - L2 LINE L2 -2 3270 3152 2133 113 3 27 chr4 27276206 27276506 -175051841 - AluSx SINE Alu -3 309 17 430 226 226 13 chr4 27276776 27276935 -175051412 + MIR SINE MIR 49 241 -21 221 247 14 68 chr4 27277137 27277210 -175051137 - MIR SINE MIR -123 85 17 267 384 46 13 chr4 27277793 27277944 -175050403 + MER5A DNA MER1_type 34 189 0 2045 133 7 23 chr4 27278366 27278668 -175049679 - AluSx SINE Alu -15 297 1 330 294 17 17 chr4 27279085 27279262 -175049085 - L1ME LINE L1 -355 5766 5590 203 361 0 0 chr4 27279534 27279595 -175048752 + L2 LINE L2 3212 3272 0 * 428 309 184 10 chr4 27279585 27279786 -175048561 + MIR SINE MIR 6 241 -21 462 62 0 186 chr4 27279923 27280020 -175048327 + MADE1 DNA Mariner 2 80 0 873 114 0 23 chr4 27280620 27280751 -175047596 - FLAM_C SINE Alu -5 128 1 376 344 53 13 chr4 27281113 27281264 -175047083 + MIR3 SINE MIR 3 159 -49 301 244 165 8 chr4 27281266 27281393 -175046954 + MER117 DNA MER1_type 2 148 -49 224 345 126 0 chr4 27281898 27281985 -175046362 + L2 LINE L2 3159 3256 -16 1477 286 142 21 chr4 27282840 27283490 -175044857 - L3 LINE CR1 -7 1570 843 182 250 56 69 chr4 27283731 27283760 -175044587 + L3 LINE CR1 463 491 -1086 1034 159 74 0 chr4 27283760 27283936 -175044411 - MER5A DNA MER1_type 0 189 1 182 250 56 69 chr4 27283936 27283978 -175044369 + L3 LINE CR1 491 533 -1044 246 279 29 0 chr4 27284201 27284269 -175044078 - MIR SINE MIR -26 236 167 2372 114 14 46 chr4 27284581 27284948 -175043399 + LTR18A LTR ERVL 3 357 0 2643 191 23 19 chr4 27284974 27285498 -175042849 + HERVL18 LTR ERVL 9 534 -5513 2018 208 63 9 chr4 27285467 27285909 -175042438 + HERVL18 LTR ERVL 1149 1614 -4433 * 259 57 0 0 chr4 27285907 27285942 -175042405 + HERVL18 LTR ERVL 1776 1810 -4237 * 1157 112 77 2 chr4 27285941 27286198 -175042149 + HERVL18 LTR ERVL 2119 2452 -3595 * 4826 177 12 5 chr4 27286197 27287044 -175041303 + HERVL18 LTR ERVL 2720 3572 -2475 643 128 11 0 chr4 27287054 27287148 -175041199 + HERVL18 LTR ERVL 4394 4488 -1559 514 172 30 0 chr4 27287207 27287306 -175041041 + HERVL18 LTR ERVL 5946 6047 0 2185 129 13 76 chr4 27287307 27287688 -175040659 + LTR18A LTR ERVL 1 357 0 21 89 0 0 chr4 27288355 27288411 -175039936 + AT_rich Low_complexity Low_complexity 1 56 0 605 155 54 47 chr4 27288610 27288758 -175039589 - MIR SINE MIR 0 262 114 3557 130 26 16 chr4 27288792 27289408 -175038939 - L1MC1 LINE L1 0 6333 5712 326 303 112 13 chr4 27289815 27289967 -175038380 + L1ME3A LINE L1 5989 6155 -15 344 276 0 0 chr4 27290137 27290213 -175038134 - MIR3 SINE MIR -24 184 109 33 43 0 0 chr4 27290351 27290398 -175037949 + AT_rich Low_complexity Low_complexity 1 47 0 2434 69 0 3 chr4 27292260 27292565 -175035782 - AluY SINE Alu -7 304 1 2331 112 0 0 chr4 27295379 27295683 -175032664 - AluSx SINE Alu -8 304 1 30 27 0 0 chr4 27295948 27295985 -175032362 + AT_rich Low_complexity Low_complexity 1 37 0 323 253 126 77 chr4 27296145 27296327 -175032020 + MIR SINE MIR 2 192 -70 2002 138 3 0 chr4 27297242 27297531 -175030816 - AluSx SINE Alu -22 290 1 199 327 97 12 chr4 27298307 27298443 -175029904 + L3b LINE CR1 1287 1441 -142 2847 131 35 33 chr4 27298443 27298932 -175029415 - LTR2B LTR ERV1 0 490 1 199 327 97 12 chr4 27298932 27298960 -175029387 + L3b LINE CR1 1441 1465 -118 1932 82 47 72 chr4 27299940 27300259 -175028088 + AluSq SINE Alu 1 311 -2 252 263 109 0 chr4 27300500 27300637 -175027710 - L1ME LINE L1 -295 5826 5675 1259 85 149 5 chr4 27300901 27301102 -175027245 - MER30 DNA MER1_type 0 230 1 2011 58 0 149 chr4 27302016 27302364 -175025983 - AluY SINE Alu -15 296 1 404 223 89 27 chr4 27302485 27302597 -175025750 - MER5B DNA MER1_type -14 164 46 390 249 22 50 chr4 27302915 27303096 -175025251 + (CCCCG)n Simple_repeat Simple_repeat 4 179 0 3526 261 121 16 chr4 27304446 27305706 -175022641 - L2 LINE L2 -1772 1542 150 358 318 9 0 chr4 27305874 27305981 -175022366 - MIR SINE MIR -68 140 33 22 35 0 0 chr4 27307156 27307185 -175021162 + AT_rich Low_complexity Low_complexity 1 29 0 1607 148 0 79 chr4 27307256 27307561 -175020786 - AluSx SINE Alu -31 281 1 272 128 26 0 chr4 27307724 27307763 -175020584 + AluJo/FLAM SINE Alu 76 115 -187 848 136 7 21 chr4 27307765 27307905 -175020442 - AluJb SINE Alu -174 138 1 2069 131 3 7 chr4 27308675 27308981 -175019366 + AluSg SINE Alu 1 305 -5 1217 120 0 6 chr4 27309473 27309648 -175018699 + AluSc SINE Alu 135 308 -1 230 223 204 0 chr4 27309649 27309752 -175018595 - Charlie5 DNA MER1_type -2238 374 251 1918 140 6 22 chr4 27309757 27310072 -175018275 + AluSx SINE Alu 1 310 -2 2477 59 0 50 chr4 27310719 27311041 -175017306 - AluY SINE Alu -5 306 1 222 37 0 0 chr4 27311173 27311200 -175017147 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 29 60 0 0 chr4 27311405 27311455 -175016892 + AT_rich Low_complexity Low_complexity 1 50 0 2096 121 13 0 chr4 27311488 27311793 -175016554 + AluSq SINE Alu 1 309 -4 243 282 230 0 chr4 27312229 27312403 -175015944 + MIR SINE MIR 32 245 -17 1757 149 28 0 chr4 27312407 27312696 -175015651 - AluSx SINE Alu 0 312 16 2047 133 3 0 chr4 27313206 27313500 -175014847 - AluSx SINE Alu -13 299 5 242 188 21 94 chr4 27313500 27313596 -175014751 + LTR33A LTR ERVL 434 522 -1 324 305 38 9 chr4 27313613 27313718 -175014629 - L2 LINE L2 0 3313 3206 7328 159 74 32 chr4 27313748 27313809 -175014538 - Charlie5 DNA MER1_type 0 2624 2567 2371 88 3 0 chr4 27313809 27314104 -175014243 + AluSx SINE Alu 1 296 -16 7328 159 74 32 chr4 27314104 27314834 -175013513 - Charlie5 DNA MER1_type -57 2567 1869 1895 173 0 3 chr4 27314834 27315146 -175013201 - AluJb SINE Alu -1 311 1 7328 159 74 32 chr4 27315146 27315991 -175012356 - Charlie5 DNA MER1_type -755 1869 918 1357 101 5 29 chr4 27316185 27316392 -175011955 + AluSg/x SINE Alu 73 274 -36 330 26 0 0 chr4 27316393 27316432 -175011915 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 578 313 13 22 chr4 27317031 27317255 -175011092 - MIR SINE MIR -40 222 1 837 130 0 0 chr4 27317256 27317379 -175010968 - AluJ SINE Alu -7 305 183 884 133 39 0 chr4 27317389 27317517 -175010830 - AluJ SINE Alu -169 133 1 1858 142 0 28 chr4 27317530 27317839 -175010508 - AluSx SINE Alu 0 301 1 409 282 53 18 chr4 27317975 27318145 -175010202 + MIR SINE MIR 33 208 -54 1754 167 103 42 chr4 27318255 27318662 -175009685 - MLT1C LTR MaLR 0 467 36 1300 158 5 5 chr4 27318663 27318872 -175009475 - AluJb SINE Alu -9 303 95 352 103 17 35 chr4 27318974 27319032 -175009315 - LTR6A LTR ERV1 -505 59 3 572 196 51 38 chr4 27319115 27319273 -175009074 + MER106B DNA MER1_type 897 1056 -3 1490 134 0 13 chr4 27319435 27319458 -175008889 - AluSg/x SINE Alu 0 312 290 1488 28 0 0 chr4 27319458 27319635 -175008712 + (TCTCC)n Simple_repeat Simple_repeat 2 178 0 198 0 0 0 chr4 27319642 27319664 -175008683 + (TTTTC)n Simple_repeat Simple_repeat 4 25 0 1490 134 0 13 chr4 27319664 27319863 -175008484 - AluSg/x SINE Alu -28 284 85 192 40 0 0 chr4 27319982 27320007 -175008340 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 563 128 22 172 chr4 27320018 27320198 -175008149 - L2 LINE L2 -50 3263 3111 1567 156 28 38 chr4 27320219 27320539 -175007808 + L1MC2 LINE L1 6025 6341 -3 282 29 0 0 chr4 27320560 27320595 -175007752 + (A)n Simple_repeat Simple_repeat 1 35 0 223 284 21 84 chr4 27321328 27321423 -175006924 - L2 LINE L2 -56 3216 3128 1382 231 46 9 chr4 27321486 27321664 -175006683 + MLT1A2 LTR MaLR 1 171 -203 243 0 0 0 chr4 27321664 27321691 -175006656 + (TC)n Simple_repeat Simple_repeat 2 28 0 1382 231 46 9 chr4 27321691 27321862 -175006485 + MLT1A2 LTR MaLR 171 363 -11 330 340 51 7 chr4 27322304 27322451 -175005896 + MIR SINE MIR 23 179 -29 803 226 12 0 chr4 27322452 27322616 -175005731 + L1ME LINE L1 5504 5669 -493 2243 89 7 0 chr4 27322617 27323035 -175005312 + AluSp SINE Alu 1 420 0 6009 113 13 11 chr4 27323042 27324226 -175004121 + L1MA3 LINE L1 4859 6139 -166 756 104 0 0 chr4 27324229 27324325 -175004022 + AluJ/FLAM SINE Alu 5 100 -212 2034 71 8 11 chr4 27324434 27324702 -175003645 - AluSp SINE Alu -46 267 1 992 104 7 0 chr4 27324702 27324837 -175003510 - AluSq/x SINE Alu -177 136 1 394 241 0 0 chr4 27324901 27324988 -175003359 + L2 LINE L2 3187 3273 -40 216 300 88 0 chr4 27325082 27325162 -175003185 + L2 LINE L2 3134 3220 -52 446 254 0 18 chr4 27325182 27325292 -175003055 - L2 LINE L2 -4 3309 3202 242 317 78 42 chr4 27325298 27325440 -175002907 - L2 LINE L2 -9 3304 3158 1827 158 63 20 chr4 27325531 27325878 -175002469 + MLT1A1 LTR MaLR 1 362 -3 335 313 133 24 chr4 27325880 27326046 -175002301 + MIR SINE MIR 17 200 -62 2004 127 3 10 chr4 27327075 27327367 -175000980 - AluSx SINE Alu -22 290 1 1269 107 95 196 chr4 27327375 27327711 -175000636 - AluJo SINE Alu 0 302 1 264 282 20 40 chr4 27327838 27327987 -175000360 + L1ME4a LINE L1 5976 6121 0 378 101 27 0 chr4 27328389 27328464 -174999883 + L1P5 LINE L1 5409 5488 -666 2039 87 80 0 chr4 27328466 27328742 -174999605 + AluSg SINE Alu 1 298 -12 310 223 133 85 chr4 27328770 27328981 -174999366 - AluSq SINE Alu 0 303 83 1587 114 188 8 chr4 27329543 27329798 -174998549 - AluSx SINE Alu -11 301 1 207 0 0 0 chr4 27329826 27329849 -174998498 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 1358 133 127 112 chr4 27329878 27330133 -174998214 + Charlie5 DNA MER1_type 426 691 -1933 2010 103 21 3 chr4 27330133 27330423 -174997924 + AluSp SINE Alu 1 295 -18 1358 133 127 112 chr4 27330423 27330594 -174997753 + Charlie5 DNA MER1_type 691 858 -1766 1143 229 7 58 chr4 27330659 27330969 -174997378 - AluJb SINE Alu -8 294 1 251 154 46 31 chr4 27331008 27331073 -174997274 + Charlie5 DNA MER1_type 855 920 -1692 2237 91 11 0 chr4 27331262 27331548 -174996799 + AluSq SINE Alu 5 293 -20 400 323 41 25 chr4 27331564 27331883 -174996464 - L1ME4a LINE L1 -103 6018 5695 13737 149 39 28 chr4 27333167 27334136 -174994211 - Tigger1 DNA MER2_type -1 2417 1461 1564 146 109 4 chr4 27334136 27334403 -174993944 + AluJb SINE Alu 1 295 -17 13737 149 39 28 chr4 27334403 27335508 -174992839 - Tigger1 DNA MER2_type -957 1461 370 2031 105 61 0 chr4 27335508 27335803 -174992544 - AluSp SINE Alu 0 313 1 1963 150 10 3 chr4 27335806 27336100 -174992247 - AluSx SINE Alu -16 296 1 13737 149 39 28 chr4 27336100 27336409 -174991938 - Tigger1 DNA MER2_type -2049 369 1 25 51 0 0 chr4 27336562 27336601 -174991746 + AT_rich Low_complexity Low_complexity 1 39 0 1540 159 72 14 chr4 27337445 27337721 -174990626 + AluJo SINE Alu 1 292 -20 2183 104 13 19 chr4 27338580 27338750 -174989597 - AluSx SINE Alu -7 305 136 2429 71 0 0 chr4 27338750 27339047 -174989300 - AluSc SINE Alu -12 297 1 2183 104 13 19 chr4 27339047 27339183 -174989164 - AluSx SINE Alu -176 136 1 573 263 125 18 chr4 27340904 27341128 -174987219 - MIR SINE MIR 0 262 15 741 259 140 35 chr4 27342403 27342710 -174985637 - MLT1H LTR MaLR -182 367 1 2239 121 0 0 chr4 27342970 27343276 -174985071 + AluSx SINE Alu 1 306 -6 350 111 95 0 chr4 27344077 27344140 -174984207 - L1MA4A LINE L1 -6 6297 6229 273 314 113 24 chr4 27344869 27344993 -174983354 - MIR3 SINE MIR -66 142 8 2207 102 26 7 chr4 27345035 27345338 -174983009 - AluSx SINE Alu -1 311 3 476 326 117 61 chr4 27345569 27345946 -174982401 + L2 LINE L2 2866 3263 -9 342 253 50 91 chr4 27346594 27346815 -174981532 - HAL1 LINE L1 -4 2503 2292 1005 286 87 43 chr4 27346990 27347527 -174980820 - HAL1 LINE L1 -668 1839 1264 788 188 0 0 chr4 27347527 27347655 -174980692 - FLAM_A SINE Alu -5 128 1 1005 286 87 43 chr4 27347655 27347796 -174980551 - HAL1 LINE L1 -1243 1264 1131 1230 261 148 31 chr4 27347855 27348569 -174979778 - L2 LINE L2 -174 3139 2335 1292 233 120 69 chr4 27348584 27349224 -174979123 - L1MC4 LINE L1 -4 8038 7366 2941 245 196 12 chr4 27349233 27350587 -174977760 - L2 LINE L2 -961 2353 750 325 310 55 21 chr4 27350590 27350735 -174977612 - HAL1 LINE L1 -1394 1113 964 188 200 80 0 chr4 27351581 27351631 -174976716 - MIR SINE MIR -98 164 111 295 305 57 0 chr4 27352699 27352804 -174975543 - L1MC5 LINE L1 -46 7915 7805 682 190 35 0 chr4 27352834 27352976 -174975371 - L1MA4 LINE L1 -5 6295 6149 211 267 44 56 chr4 27353091 27353181 -174975166 - L2 LINE L2 -36 3277 3189 658 235 117 0 chr4 27353208 27353374 -174974973 - MER3 DNA MER1_type 0 209 25 201 244 37 73 chr4 27354263 27354345 -174974002 + MIR SINE MIR 17 95 -113 245 213 250 19 chr4 27354345 27354453 -174973894 + L2 LINE L2 3179 3311 -2 355 169 0 0 chr4 27356968 27357027 -174971320 - Charlie1a DNA MER1_type 0 1455 1397 1298 131 0 0 chr4 27357027 27357210 -174971137 + AluSg/x SINE Alu 118 300 -12 2886 166 70 56 chr4 27357210 27357339 -174971008 - Charlie1a DNA MER1_type -1356 1405 1279 750 204 80 0 chr4 27357339 27357501 -174970846 + FAM SINE Alu 1 175 0 2886 166 70 56 chr4 27357501 27358118 -174970229 - Charlie1a DNA MER1_type -1482 1279 649 1340 157 142 11 chr4 27358128 27358389 -174969958 - AluJb SINE Alu -17 295 1 1493 225 129 10 chr4 27358404 27358790 -174969557 - Charlie1a DNA MER1_type -1023 432 1 427 196 214 12 chr4 27360014 27360182 -174968165 - MIR SINE MIR -5 257 56 2077 94 101 3 chr4 27360223 27360551 -174967796 + MER46B DNA MER2_type 1 235 -1 243 0 0 0 chr4 27360590 27360617 -174967730 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 800 294 17 4 chr4 27361125 27361356 -174966991 + MIR SINE MIR 2 235 -27 2699 219 68 55 chr4 27361402 27362092 -174966255 - MER21B LTR ERV1 -62 801 98 1783 140 49 0 chr4 27362092 27362357 -174965990 + AluSx SINE Alu 25 302 -10 2699 219 68 55 chr4 27362357 27362435 -174965912 - MER21B LTR ERV1 -765 98 23 329 310 69 25 chr4 27362541 27362744 -174965603 + MIR SINE MIR 8 219 -43 192 77 0 0 chr4 27363197 27363223 -174965124 + (TTTTTG)n Simple_repeat Simple_repeat 4 29 0 373 192 26 0 chr4 27363413 27363491 -174964856 + MER116 DNA Mariner 1 80 0 198 0 0 0 chr4 27363517 27363539 -174964808 + (TG)n Simple_repeat Simple_repeat 2 23 0 23 33 0 0 chr4 27363879 27363909 -174964438 + AT_rich Low_complexity Low_complexity 1 30 0 1955 154 13 0 chr4 27366708 27367007 -174961340 - AluJo SINE Alu -9 303 1 1969 149 3 13 chr4 27368191 27368493 -174959854 + AluSx SINE Alu 1 299 -13 466 68 41 0 chr4 27369902 27369975 -174958372 - L1MA3 LINE L1 0 6305 6230 303 304 92 4 chr4 27371066 27371212 -174957135 + MER5A DNA MER1_type 22 188 -1 1544 150 82 0 chr4 27372054 27372321 -174956026 + AluJb SINE Alu 1 289 -23 357 82 0 0 chr4 27372322 27372337 -174956010 + (TG)n Simple_repeat Simple_repeat 1 64 0 357 82 0 0 chr4 27372337 27372386 -174955961 + (TG)n Simple_repeat Simple_repeat 2 50 0 888 310 93 2 chr4 27372594 27373078 -174955269 - L2 LINE L2 -1326 1988 1461 289 311 141 28 chr4 27373112 27373475 -174954872 - L2 LINE L2 -2304 1010 607 231 61 0 0 chr4 27373782 27373815 -174954532 + (TTTAA)n Simple_repeat Simple_repeat 3 35 0 1430 181 47 29 chr4 27373816 27374092 -174954255 - AluJo SINE Alu -31 281 1 347 266 101 41 chr4 27374830 27374999 -174953348 - MIR SINE MIR -52 210 32 622 304 36 24 chr4 27375003 27375250 -174953097 - MIR SINE MIR 0 262 13 1402 136 15 0 chr4 27375596 27375802 -174952545 - AluSg/x SINE Alu -19 293 85 297 0 0 0 chr4 27375911 27375944 -174952403 + (TG)n Simple_repeat Simple_repeat 2 34 0 1237 151 184 25 chr4 27375961 27376200 -174952147 - AluJo SINE Alu -35 277 1 472 279 14 43 chr4 27377177 27377385 -174950962 - MIR SINE MIR -5 257 56 245 217 34 16 chr4 27378053 27378125 -174950222 + MER45A DNA AcHobo 2 64 -114 2056 105 26 61 chr4 27378141 27378485 -174949862 - THE1B LTR MaLR -32 332 1 1633 163 30 13 chr4 27378511 27378811 -174949536 - MER89 LTR ERV1 -2 557 253 335 183 21 11 chr4 27378811 27379052 -174949295 + AluJo SINE Alu 1 299 -3 2374 97 0 0 chr4 27379064 27379373 -174948974 - AluSq SINE Alu -3 310 2 817 252 91 9 chr4 27379373 27379603 -174948744 - MER89 LTR ERV1 -304 255 7 449 165 153 0 chr4 27379618 27379703 -174948644 + MER45A DNA AcHobo 81 178 0 350 293 83 13 chr4 27380527 27380684 -174947663 + MIR SINE MIR 31 198 -64 432 290 6 19 chr4 27380890 27381052 -174947295 + MARNA DNA Mariner 340 499 -87 273 233 0 14 chr4 27381425 27381498 -174946849 + MER63 DNA MER1_type 953 1024 -36 2074 127 10 3 chr4 27381502 27381801 -174946546 + AluSq SINE Alu 1 301 -12 1099 243 131 44 chr4 27381841 27382413 -174945934 - HAL1 LINE L1 -1174 1333 712 580 256 154 43 chr4 27382414 27382648 -174945699 - MLT1H LTR MaLR -2 547 288 319 252 45 54 chr4 27382648 27382759 -174945588 - HAL1 LINE L1 -2397 110 1 547 290 86 15 chr4 27382795 27382931 -174945416 - L2 LINE L2 -345 2927 2802 2187 129 3 0 chr4 27382931 27383240 -174945107 - AluSx SINE Alu -2 310 1 547 290 86 15 chr4 27383240 27383440 -174944907 - L2 LINE L2 -470 2802 2572 304 229 24 0 chr4 27384248 27384331 -174944016 - MIR SINE MIR -108 154 70 2102 133 0 0 chr4 27384702 27384996 -174943351 + AluSx SINE Alu 1 294 -18 214 271 72 72 chr4 27385067 27385274 -174943073 + MIR SINE MIR 35 241 -21 708 259 34 43 chr4 27385310 27385520 -174942827 + MIR SINE MIR 23 228 -34 379 221 106 0 chr4 27385836 27385940 -174942407 - L1ME4a LINE L1 -1 6120 6006 2321 105 0 6 chr4 27386058 27386371 -174941976 + AluSx SINE Alu 1 311 -1 2437 174 102 15 chr4 27386566 27386866 -174941481 - L1PA16 LINE L1 -16 6150 5878 2630 59 0 0 chr4 27386866 27387171 -174941176 - AluY SINE Alu -6 305 1 2437 174 102 15 chr4 27387171 27387207 -174941140 - L1PA16 LINE L1 -288 5878 5847 366 23 0 0 chr4 27387207 27387250 -174941097 + (TG)n Simple_repeat Simple_repeat 2 44 0 2437 174 102 15 chr4 27387250 27387441 -174940906 - L1PA16 LINE L1 -319 5847 5576 2719 221 90 20 chr4 27387935 27388725 -174939622 - L1ME3A LINE L1 -1 6169 5325 333 308 126 13 chr4 27389280 27389439 -174938908 + MIR SINE MIR 32 208 -54 1991 130 47 13 chr4 27390669 27390970 -174937377 + AluSx SINE Alu 1 311 -1 411 334 146 13 chr4 27391100 27391408 -174936939 - L2 LINE L2 -1 3271 2923 583 262 108 68 chr4 27391551 27392014 -174936333 - L2 LINE L2 0 3313 2740 1790 141 31 21 chr4 27392014 27392304 -174936043 - AluJo SINE Alu -19 293 1 583 262 108 68 chr4 27392304 27392518 -174935829 - L2 LINE L2 -573 2740 2536 605 193 18 48 chr4 27392533 27392699 -174935648 + MER5A DNA MER1_type 1 161 -28 2410 95 0 0 chr4 27392950 27393255 -174935092 + AluSx SINE Alu 1 305 -7 309 344 46 0 chr4 27393255 27393406 -174934941 - MIR SINE MIR -5 257 100 371 168 40 30 chr4 27393417 27393518 -174934829 + L1MB3 LINE L1 6082 6183 0 2436 85 13 0 chr4 27394070 27394375 -174933972 - AluSx SINE Alu -3 309 1 23 33 0 0 chr4 27394381 27394411 -174933936 + AT_rich Low_complexity Low_complexity 1 30 0 605 274 58 61 chr4 27394826 27395136 -174933211 + MER46C DNA MER2_type 30 338 0 190 278 111 19 chr4 27395173 27395281 -174933066 + MIR SINE MIR 23 140 -68 368 269 62 66 chr4 27395420 27395677 -174932670 + L2 LINE L2 3015 3270 -43 26 50 0 0 chr4 27397001 27397041 -174931306 + AT_rich Low_complexity Low_complexity 1 40 0 2133 96 7 36 chr4 27397084 27397387 -174930960 - AluSq SINE Alu -19 294 1 667 306 53 42 chr4 27397395 27397827 -174930520 - L1ME3A LINE L1 -285 5885 5449 283 264 207 11 chr4 27397884 27398098 -174930249 - MIR SINE MIR -7 255 2 194 350 48 10 chr4 27398098 27398201 -174930146 - MIR3 SINE MIR -51 157 51 254 264 189 0 chr4 27398390 27398496 -174929851 - MIR SINE MIR -31 231 106 3039 138 40 108 chr4 27398717 27398916 -174929431 - L1MC3 LINE L1 -6 7779 7568 1882 151 30 7 chr4 27398916 27399221 -174929126 - AluSx SINE Alu 0 312 1 3039 138 40 108 chr4 27399221 27399718 -174928629 - L1MC3 LINE L1 -217 7568 7130 1904 153 14 14 chr4 27399718 27400013 -174928334 + AluJb SINE Alu 1 295 -17 328 290 36 22 chr4 27400215 27400357 -174927990 - MIR SINE MIR -60 148 18 210 290 101 36 chr4 27400718 27400856 -174927491 - MER5A DNA MER1_type -6 183 37 583 198 9 0 chr4 27400875 27400981 -174927366 + AluJb SINE Alu 193 299 -13 437 250 14 0 chr4 27401026 27401170 -174927177 + GA-rich Low_complexity Low_complexity 3 148 0 906 152 0 0 chr4 27401174 27401492 -174926855 + FLAM_C SINE Alu 1 318 0 3592 138 69 12 chr4 27401503 27402172 -174926175 + L1MB3 LINE L1 5477 6183 0 636 173 12 93 chr4 27402184 27402293 -174926054 - MIR SINE MIR -74 188 72 2132 94 22 0 chr4 27402293 27402570 -174925777 + AluSq SINE Alu 1 283 -30 207 0 0 0 chr4 27402573 27402596 -174925751 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 636 173 12 93 chr4 27402596 27402644 -174925703 - MIR SINE MIR -192 70 40 367 259 78 92 chr4 27402646 27402798 -174925549 + L2 LINE L2 2971 3124 -189 213 39 0 0 chr4 27402798 27402824 -174925523 + (TTA)n Simple_repeat Simple_repeat 2 27 0 367 259 78 92 chr4 27402824 27403018 -174925329 + L2 LINE L2 3124 3312 -1 575 275 64 49 chr4 27403019 27403364 -174924983 - L2 LINE L2 -14 3258 2909 363 68 0 0 chr4 27403420 27403464 -174924883 + MER57B LTR ERV1 324 367 -67 25 0 0 0 chr4 27403464 27403489 -174924858 + AT_rich Low_complexity Low_complexity 1 25 0 342 308 58 47 chr4 27403760 27403932 -174924415 - MIR SINE MIR -62 200 27 1768 193 82 37 chr4 27404852 27405231 -174923116 - MSTD LTR MaLR 0 396 1 258 333 138 24 chr4 27405464 27405755 -174922592 + L2 LINE L2 334 657 -2657 993 243 194 19 chr4 27405839 27406371 -174921976 + L2 LINE L2 1320 1944 -1370 721 217 60 18 chr4 27407140 27407306 -174921041 - AluJo SINE Alu -20 292 120 1019 85 8 0 chr4 27407380 27407510 -174920837 - AluSg SINE Alu -179 131 1 214 320 13 0 chr4 27407515 27407593 -174920754 + L2 LINE L2 3234 3312 -1 1102 124 56 6 chr4 27408207 27408385 -174919962 - L1PB4 LINE L1 -2 6154 5968 1086 190 5 9 chr4 27408385 27408596 -174919751 - AluSq SINE Alu -20 293 84 3021 125 55 50 chr4 27408596 27409089 -174919258 - L1PB4 LINE L1 -168 5988 5490 1849 105 98 25 chr4 27409089 27409374 -174918973 - AluSq SINE Alu -7 306 1 3021 125 55 50 chr4 27409374 27409442 -174918905 - L1PB4 LINE L1 -666 5490 5424 252 282 20 40 chr4 27409853 27410002 -174918345 - L1ME4a LINE L1 0 6121 5976 1152 107 95 196 chr4 27410129 27410465 -174917882 + AluJo SINE Alu 1 302 0 2067 126 0 10 chr4 27410473 27410766 -174917581 + AluSx SINE Alu 1 290 -22 297 317 126 24 chr4 27411794 27411961 -174916386 - MIR SINE MIR -62 200 17 1756 164 58 17 chr4 27411963 27412311 -174916036 - MLT1A1 LTR MaLR -3 362 1 210 317 78 42 chr4 27412402 27412544 -174915803 + L2 LINE L2 3158 3304 -9 411 254 0 18 chr4 27412550 27412660 -174915687 + L2 LINE L2 3202 3309 -4 189 300 88 0 chr4 27412680 27412760 -174915587 - L2 LINE L2 -52 3220 3134 366 241 0 0 chr4 27412854 27412941 -174915406 - L2 LINE L2 -40 3273 3187 1996 105 22 38 chr4 27413005 27413140 -174915207 + AluSx SINE Alu 1 137 -175 2520 77 0 0 chr4 27413140 27413450 -174914897 + AluSp SINE Alu 1 310 -3 1996 105 22 38 chr4 27413450 27413628 -174914719 + AluSx SINE Alu 137 309 -3 1413 178 34 60 chr4 27414070 27414368 -174913979 + AluJb SINE Alu 5 294 -18 401 248 208 58 chr4 27414716 27414990 -174913357 - L2 LINE L2 -21 3292 2978 475 251 145 67 chr4 27415177 27415590 -174912757 - L2 LINE L2 -321 2992 2550 2056 143 7 79 chr4 27415850 27416268 -174912079 - MLT1B LTR MaLR 0 390 3 1960 129 23 13 chr4 27416287 27416590 -174911757 + AluSx SINE Alu 7 312 0 411 303 45 7 chr4 27417239 27417394 -174910953 - MIR SINE MIR -57 205 45 12186 112 166 84 chr4 27417793 27418138 -174910209 - Tigger4(Zombi) DNA MER2_type -1 2730 2415 2301 102 3 3 chr4 27418138 27418451 -174909896 - AluSq SINE Alu 0 313 1 12186 112 166 84 chr4 27418451 27418682 -174909665 - Tigger4(Zombi) DNA MER2_type -316 2415 2204 207 0 0 0 chr4 27418682 27418705 -174909642 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 12186 112 166 84 chr4 27418705 27418777 -174909570 - Tigger4(Zombi) DNA MER2_type -527 2204 2139 2012 138 0 0 chr4 27418777 27419067 -174909280 - AluSg SINE Alu 0 310 21 12186 112 166 84 chr4 27419067 27419311 -174909036 - Tigger4(Zombi) DNA MER2_type -592 2139 1916 919 152 7 0 chr4 27419311 27419449 -174908898 + AluJo SINE Alu 1 139 -173 12186 112 166 84 chr4 27419449 27419466 -174908881 - Tigger4(Zombi) DNA MER2_type -815 1916 1902 1467 106 0 10 chr4 27419466 27419665 -174908682 - AluSq SINE Alu -116 197 1 12186 112 166 84 chr4 27419665 27420255 -174908092 - Tigger4(Zombi) DNA MER2_type -829 1902 1362 2517 71 0 0 chr4 27420255 27420552 -174907795 - AluSc SINE Alu -12 297 1 12186 112 166 84 chr4 27420552 27421423 -174906924 - Tigger4(Zombi) DNA MER2_type -1369 1362 11 2159 103 0 0 chr4 27422211 27422483 -174905864 + AluSx SINE Alu 36 307 -5 226 0 0 56 chr4 27422537 27422573 -174905774 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 318 105 0 53 chr4 27422577 27422634 -174905713 - AluSp/q SINE Alu -17 286 233 1935 122 0 7 chr4 27422821 27423091 -174905256 - AluSx SINE Alu -44 268 1 587 199 20 0 chr4 27423119 27423265 -174905082 + GA-rich Low_complexity Low_complexity 3 151 0 1985 108 0 8 chr4 27423752 27424020 -174904327 - AluSq SINE Alu -33 280 15 517 140 320 0 chr4 27424248 27424348 -174903999 + FLAM_C SINE Alu 1 132 -1 1859 116 19 0 chr4 27424854 27425112 -174903235 + AluSq SINE Alu 50 312 -1 1935 140 23 7 chr4 27425465 27425765 -174902582 - AluSq SINE Alu -8 305 1 795 155 0 23 chr4 27425797 27425926 -174902421 + FLAM_C SINE Alu 1 126 -7 200 214 0 24 chr4 27426678 27426720 -174901627 + (TAAG)n Simple_repeat Simple_repeat 2 42 0 2292 107 0 7 chr4 27426737 27427047 -174901300 + AluSq SINE Alu 1 308 -5 1639 264 75 19 chr4 27427049 27427618 -174900729 + L1MC1 LINE L1 5352 5956 -1852 2112 144 0 0 chr4 27427618 27427917 -174900430 + AluSq SINE Alu 2 300 -13 1639 264 75 19 chr4 27427917 27427933 -174900414 + L1MC1 LINE L1 5956 5970 -1838 243 61 0 0 chr4 27427948 27427981 -174900366 + (CA)n Simple_repeat Simple_repeat 2 34 0 4989 153 3 16 chr4 27427981 27428961 -174899386 + L1PA15 LINE L1 4502 5476 -689 1390 136 5 0 chr4 27428967 27429173 -174899174 - AluSg/x SINE Alu -20 290 84 3643 97 12 15 chr4 27429173 27429691 -174898656 + L1PA15 LINE L1 5461 5976 -189 1928 94 14 11 chr4 27429806 27430093 -174898254 + L1PA15 LINE L1 5875 6162 -3 252 261 0 0 chr4 27430164 27430233 -174898114 + (TA)n Simple_repeat Simple_repeat 1 69 0 1222 213 141 32 chr4 27430389 27430793 -174897554 - MLT1C LTR MaLR -19 448 1 1066 224 42 102 chr4 27431260 27431681 -174896666 - MLT1A2 LTR MaLR 0 374 1 732 237 60 5 chr4 27431961 27432176 -174896171 + MIR SINE MIR 36 262 0 2383 90 7 0 chr4 27432441 27432740 -174895607 + AluSp SINE Alu 3 303 -10 790 142 8 15 chr4 27432741 27432875 -174895472 + L1MC1 LINE L1 6192 6324 -9 1646 157 10 51 chr4 27432876 27432960 -174895387 + AluJo SINE Alu 1 87 -225 2593 62 0 0 chr4 27432960 27433264 -174895083 + AluY SINE Alu 1 304 -7 1646 157 10 51 chr4 27433264 27433473 -174894874 + AluJo SINE Alu 87 282 -30 204 40 0 0 chr4 27433476 27433501 -174894846 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 1294 105 6 0 chr4 27433952 27434124 -174894223 - AluSg/x SINE Alu -20 290 118 335 304 0 0 chr4 27434146 27434248 -174894099 + MIR SINE MIR 148 249 -13 23 33 0 0 chr4 27434954 27434984 -174893363 + AT_rich Low_complexity Low_complexity 1 30 0 2822 116 16 12 chr4 27435078 27435510 -174892837 + MER57B LTR ERV1 1 434 0 528 244 140 64 chr4 27435525 27435619 -174892728 - MARNA DNA Mariner -162 424 339 2214 97 31 0 chr4 27435619 27435909 -174892438 - AluSq SINE Alu -14 299 1 528 244 140 64 chr4 27435909 27436064 -174892283 - MARNA DNA Mariner -247 339 156 324 340 19 0 chr4 27436122 27436225 -174892122 - MER81 DNA DNA -3 111 7 260 225 98 46 chr4 27436579 27436725 -174891622 + MIR SINE MIR 54 205 -57 4340 111 18 66 chr4 27436904 27437627 -174890720 + LTR8 LTR ERV1 4 691 0 230 296 24 72 chr4 27437633 27437758 -174890589 - L2 LINE L2 -186 3086 2968 2469 82 0 0 chr4 27437876 27438180 -174890167 + AluY SINE Alu 1 304 -7 186 250 33 92 chr4 27438210 27438362 -174889985 - L2 LINE L2 -618 2696 2554 207 243 22 140 chr4 27438393 27438529 -174889818 + L2 LINE L2 3024 3143 -170 495 234 42 42 chr4 27438689 27438856 -174889491 + L2 LINE L2 3147 3313 0 1142 138 0 95 chr4 27440083 27440169 -174888178 + L1PA15 LINE L1 5954 6047 -118 2133 125 10 13 chr4 27440169 27440482 -174887865 + AluSx SINE Alu 1 312 0 1142 138 0 95 chr4 27440482 27440499 -174887848 + L1PA15 LINE L1 6047 6064 -101 2126 131 0 19 chr4 27440499 27440811 -174887536 + AluSx SINE Alu 1 306 -6 1142 138 0 95 chr4 27440811 27440938 -174887409 + L1PA15 LINE L1 6064 6163 -2 28 0 0 0 chr4 27440939 27440967 -174887380 + AT_rich Low_complexity Low_complexity 1 28 0 1076 104 94 30 chr4 27440976 27441177 -174887170 + L1PA16 LINE L1 5952 6165 -1 192 97 0 0 chr4 27441219 27441250 -174887097 + (CAAAAA)n Simple_repeat Simple_repeat 4 34 0 341 271 126 0 chr4 27441559 27441710 -174886637 - L1MEd LINE L1 -4969 1150 981 405 333 80 30 chr4 27441897 27442287 -174886060 - L1MEd LINE L1 -5626 493 81 2051 110 23 36 chr4 27442287 27442595 -174885752 + AluSx SINE Alu 1 304 -8 2810 195 33 20 chr4 27442727 27442892 -174885455 + L1M4 LINE L1 3622 3783 -2363 2169 125 3 10 chr4 27442892 27443204 -174885143 + AluSx SINE Alu 1 310 -2 2810 195 33 20 chr4 27443204 27443637 -174884710 + L1M4 LINE L1 3783 4228 -1918 862 199 44 44 chr4 27443653 27443859 -174884488 + L1MB8 LINE L1 5964 6169 -9 2108 122 0 0 chr4 27443912 27444198 -174884149 - AluSx SINE Alu -26 286 1 250 227 17 118 chr4 27444383 27444571 -174883776 + L1P LINE L1 3584 3753 -2393 1786 161 6 50 chr4 27444571 27445065 -174883282 + AluSx SINE Alu 1 480 0 261 283 9 0 chr4 27445090 27445196 -174883151 + L1M4 LINE L1 3867 3973 -2173 1810 156 16 25 chr4 27445217 27445532 -174882815 + AluJo SINE Alu 1 312 0 2842 10 0 0 chr4 27445581 27445883 -174882464 + AluYa5 SINE Alu 1 302 -9 2054 134 0 10 chr4 27446112 27446404 -174881943 - AluSq SINE Alu -24 289 1 222 362 53 13 chr4 27446404 27446556 -174881791 - MIR SINE MIR -70 192 35 1550 190 6 55 chr4 27447053 27447379 -174880968 - AluJb SINE Alu -2 310 1 401 259 65 35 chr4 27447696 27447866 -174880481 + Charlie7 DNA MER1_type 46 220 -2392 448 256 134 0 chr4 27448855 27449019 -174879328 + MIR SINE MIR 44 229 -33 270 106 0 0 chr4 27449023 27449070 -174879277 + (TG)n Simple_repeat Simple_repeat 2 48 0 242 180 82 0 chr4 27449078 27449139 -174879208 + Charlie7 DNA MER1_type 1452 1517 -1095 431 220 65 24 chr4 27449149 27449317 -174879030 - MER113 DNA MER1_type? -337 184 10 2100 113 20 3 chr4 27449416 27449708 -174878639 - AluSc SINE Alu -12 297 1 672 261 105 8 chr4 27449898 27450136 -174878211 + MIR SINE MIR 1 261 -1 23 33 0 0 chr4 27450165 27450195 -174878152 + AT_rich Low_complexity Low_complexity 1 30 0 1908 107 0 19 chr4 27450209 27450508 -174877839 + AluSx SINE Alu 25 318 0 258 262 60 12 chr4 27450522 27450606 -174877741 - Charlie7 DNA MER1_type -2524 88 1 190 304 0 0 chr4 27451339 27451385 -174876962 - L3 LINE CR1 -5 1572 1527 2082 116 31 0 chr4 27451520 27451813 -174876534 + AluSx SINE Alu 1 302 -10 313 301 84 30 chr4 27451881 27452047 -174876300 + MIR3 SINE MIR 10 184 -24 695 316 30 23 chr4 27452092 27452358 -174875989 - L3 LINE CR1 -97 1480 1213 821 220 75 9 chr4 27452608 27452822 -174875525 - MIR SINE MIR -10 252 25 628 159 145 14 chr4 27452825 27452963 -174875384 + AluJb SINE Alu 137 292 -20 1959 132 28 0 chr4 27452963 27453251 -174875096 + AluJb SINE Alu 1 296 -16 2274 116 0 0 chr4 27453428 27453731 -174874616 - AluSx SINE Alu -9 303 1 1374 236 36 21 chr4 27453736 27454122 -174874225 - L1ME2 LINE L1 0 6164 5773 267 324 37 29 chr4 27454192 27454328 -174874019 - L2 LINE L2 0 3272 3136 1006 144 176 0 chr4 27454438 27454625 -174873722 - AluJo SINE Alu -12 300 81 373 233 133 0 chr4 27454757 27454845 -174873502 - MIR SINE MIR -116 146 47 388 295 132 11 chr4 27454845 27455035 -174873312 + MIR SINE MIR 2 214 -48 2456 91 0 0 chr4 27456888 27457186 -174871161 + AluSx SINE Alu 1 298 -14 390 297 176 43 chr4 27457203 27457459 -174870888 - L2 LINE L2 0 3272 2983 241 100 0 0 chr4 27457836 27457876 -174870471 - Alu SINE Alu -3 297 258 222 194 0 90 chr4 27459246 27459313 -174869034 - MIR SINE MIR -130 132 72 1892 129 44 27 chr4 27459472 27459766 -174868581 + AluJo SINE Alu 6 304 -8 548 60 0 0 chr4 27460065 27460132 -174868215 - Charlie3 DNA MER1_type 0 2712 2646 234 227 0 53 chr4 27461227 27461302 -174867045 + CT-rich Low_complexity Low_complexity 1 71 0 612 269 41 29 chr4 27461616 27461858 -174866489 + MER112 DNA MER1_type 8 252 -8 430 368 89 10 chr4 27462279 27462682 -174865665 + L2 LINE L2 2725 3187 -85 1602 191 11 14 chr4 27463024 27463307 -174865040 - AluJo SINE Alu -10 302 21 266 290 14 0 chr4 27463912 27463981 -174864366 - MIR SINE MIR -57 151 82 300 387 0 7 chr4 27464217 27464359 -174863988 + L3 LINE CR1 1391 1531 -46 314 270 0 0 chr4 27464361 27464435 -174863912 + MER5A DNA MER1_type 1 74 -115 551 300 6 6 chr4 27464435 27464595 -174863752 - MER52A LTR ERV1 0 1755 1596 890 247 34 119 chr4 27464595 27465035 -174863312 - MER52A LTR ERV1 -23 478 343 2189 140 0 3 chr4 27465164 27465471 -174862876 + AluSx SINE Alu 1 306 -6 521 231 17 0 chr4 27465503 27465620 -174862727 - LTR28 LTR ERV1 -871 149 31 2016 129 21 0 chr4 27466500 27466780 -174861567 + AluSx SINE Alu 1 286 -26 180 0 0 0 chr4 27467345 27467365 -174860982 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1696 147 17 51 chr4 27467367 27467659 -174860688 - AluJo SINE Alu -30 282 1 229 326 68 23 chr4 27468189 27468321 -174860026 + MIR SINE MIR 50 187 -75 686 174 36 18 chr4 27468401 27468568 -174859779 + L1M4 LINE L1 4560 4729 -1417 2034 196 42 74 chr4 27468568 27469134 -174859213 - MLT2B3 LTR ERVL -6 548 1 702 259 99 18 chr4 27469134 27469501 -174858846 + L1M4 LINE L1 4750 5154 -992 279 293 30 36 chr4 27469822 27469964 -174858383 - MIR SINE MIR -65 143 21 476 271 113 23 chr4 27470303 27470480 -174857867 - MIR3 SINE MIR 0 208 16 502 221 0 0 chr4 27470933 27471037 -174857310 + MSTD LTR MaLR 23 126 -270 182 309 75 64 chr4 27472030 27472124 -174856223 - L3b LINE CR1 -73 1510 1416 2311 122 0 3 chr4 27472436 27472740 -174855607 + AluSx SINE Alu 1 303 -9 1959 141 0 7 chr4 27472899 27473196 -174855151 + AluSx SINE Alu 1 295 -17 197 297 141 45 chr4 27473330 27473506 -174854841 + MIR SINE MIR 21 212 -50 354 275 0 58 chr4 27473855 27473975 -174854372 - L3 LINE CR1 -666 911 799 247 374 28 8 chr4 27474032 27474260 -174854087 - L3 LINE CR1 -916 661 361 606 219 139 33 chr4 27475210 27475425 -174852922 + MIR SINE MIR 13 250 -12 261 295 189 33 chr4 27476960 27477082 -174851265 + MIR SINE MIR 48 188 -74 585 313 0 0 chr4 27477211 27477374 -174850973 - MIR SINE MIR -98 164 2 309 232 7 56 chr4 27478091 27478233 -174850114 + G-rich Low_complexity Low_complexity 5 139 0 21 0 0 0 chr4 27478268 27478289 -174850058 + GC_rich Low_complexity Low_complexity 1 21 0 191 236 18 36 chr4 27479402 27479457 -174848890 - MIR SINE MIR -12 250 197 184 227 0 0 chr4 27479449 27479493 -174848854 - L2 LINE L2 -5 3308 3265 * 229 220 0 20 chr4 27479574 27479624 -174848723 - L2 LINE L2 -8 3305 3257 1382 132 5 0 chr4 27479939 27480136 -174848211 + AluSq SINE Alu 104 301 -12 349 289 51 66 chr4 27480307 27480421 -174847926 - L1MEc LINE L1 -4688 1708 1594 2472 52 0 7 chr4 27480421 27480711 -174847636 + AluY SINE Alu 8 295 -16 349 289 51 66 chr4 27480711 27480852 -174847495 - L1MEc LINE L1 -4802 1594 1457 539 327 156 30 chr4 27482328 27483222 -174845125 - L2 LINE L2 -4 3309 2310 3014 211 70 42 chr4 27483446 27483962 -174844385 + L1ME2 LINE L1 4886 5386 -778 2185 111 7 7 chr4 27483962 27484268 -174844079 + AluSg SINE Alu 5 310 0 3014 211 70 42 chr4 27484268 27484996 -174843351 + L1ME2 LINE L1 5386 6163 -1 299 277 50 0 chr4 27485017 27485118 -174843229 + L1MEd LINE L1 905 1010 -5109 1332 69 0 6 chr4 27486396 27486570 -174841777 - MER107 DNA MER1_type 0 197 25 1032 130 34 39 chr4 27486673 27486881 -174841466 - L1MD3 LINE L1 -385 7610 7404 262 163 20 0 chr4 27486881 27486930 -174841417 - MLT1F1 LTR MaLR -442 125 76 1910 165 10 3 chr4 27487256 27487565 -174840782 - AluSx SINE Alu -1 311 1 251 271 100 57 chr4 27488198 27488338 -174840009 - MIR3 SINE MIR -59 149 4 330 327 37 0 chr4 27488359 27488466 -174839881 - MIR SINE MIR -68 140 30 1849 172 0 3 chr4 27489009 27489306 -174839041 - AluJo SINE Alu -16 296 1 234 148 56 19 chr4 27489310 27489364 -174838983 - MLT1K LTR MaLR -14 574 519 421 244 0 11 chr4 27489534 27489624 -174838723 - MER5B DNA MER1_type -89 89 1 1066 191 5 5 chr4 27490375 27490564 -174837783 - MER5A DNA MER1_type 0 189 1 223 320 98 74 chr4 27490708 27491114 -174837233 - L2 LINE L2 -4 3268 2853 893 286 102 16 chr4 27491405 27491789 -174836558 - LTR16A LTR ERVL -10 440 24 200 271 120 53 chr4 27492321 27492454 -174835893 - MIR3 SINE MIR -23 185 44 622 290 68 52 chr4 27492570 27492935 -174835412 + L2 LINE L2 2373 2743 -571 3620 136 38 31 chr4 27493050 27493735 -174834612 + L1MB8 LINE L1 5488 6177 -1 2554 93 0 0 chr4 27493742 27494055 -174834292 + AluSq SINE Alu 1 313 0 2309 90 13 16 chr4 27494678 27494988 -174833359 - AluSx SINE Alu -3 309 1 231 36 0 0 chr4 27495030 27495058 -174833289 + (CA)n Simple_repeat Simple_repeat 2 29 0 387 228 70 18 chr4 27495435 27495549 -174832798 + MIR SINE MIR 19 138 -70 22 56 0 0 chr4 27495626 27495662 -174832685 + AT_rich Low_complexity Low_complexity 1 36 0 502 303 107 8 chr4 27496987 27497248 -174831099 - L1ME3 LINE L1 -7 6155 5869 311 345 51 39 chr4 27497390 27497645 -174830702 - L2 LINE L2 0 3272 3015 2695 207 47 24 chr4 27498112 27498692 -174829655 + MLT1E LTR MaLR 1 593 0 186 289 0 0 chr4 27501085 27501130 -174827217 + MIR SINE MIR 218 262 0 205 266 16 62 chr4 27501485 27501549 -174826798 - MIR3 SINE MIR -38 170 110 481 218 36 0 chr4 27501945 27502055 -174826292 + MLT1F LTR MaLR 426 539 -3 336 250 11 23 chr4 27502196 27502284 -174826063 + L2 LINE L2 3209 3295 -18 451 311 50 0 chr4 27504113 27504293 -174824054 - MER117 DNA MER1_type 0 197 9 215 305 38 48 chr4 27504398 27504503 -174823844 - MIR SINE MIR -8 254 151 291 233 78 22 chr4 27504590 27504680 -174823667 - MIR SINE MIR -147 115 21 228 316 69 52 chr4 27504826 27505000 -174823347 + L2 LINE L2 2829 3005 -267 1100 133 6 6 chr4 27505003 27505168 -174823179 - AluJo/FRAM SINE Alu -8 304 140 385 190 51 0 chr4 27705171 27705250 -174623097 + MIR3 SINE MIR 100 182 -26 951 130 7 0 chr4 27707412 27707558 -174620789 - AluJb SINE Alu -165 147 1 502 273 42 30 chr4 27707620 27707633 -174620714 - L2 LINE L2 -15 3298 3287 722 183 8 30 chr4 27707633 27707764 -174620583 + FLAM_A SINE Alu 4 131 -2 502 273 42 30 chr4 27707764 27707915 -174620432 - L2 LINE L2 -26 3287 3132 2123 113 3 3 chr4 27707996 27708305 -174620042 + AluSc SINE Alu 1 309 0 1425 81 0 0 chr4 27708541 27708727 -174619620 - AluY SINE Alu -9 302 117 585 150 8 55 chr4 27708834 27708961 -174619386 + AluSg/x SINE Alu 189 309 0 545 144 133 61 chr4 27708972 27709122 -174619225 - Charlie5 DNA MER1_type -2378 246 79 1906 103 8 0 chr4 27709122 27709385 -174618962 + AluSg SINE Alu 34 298 -12 545 144 133 61 chr4 27709385 27709415 -174618932 - Charlie5 DNA MER1_type -2545 79 53 284 224 133 86 chr4 27709412 27709622 -174618725 - AluSq SINE Alu 0 303 84 * 1496 114 188 8 chr4 27710185 27710440 -174617907 - AluSx SINE Alu -11 301 1 276 30 0 0 chr4 27710561 27710594 -174617753 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 608 323 9 18 chr4 27711193 27711410 -174616937 - MIR SINE MIR -40 222 8 797 152 0 0 chr4 27711416 27711541 -174616806 - AluJ SINE Alu -5 307 183 827 136 48 0 chr4 27711550 27711675 -174616672 - AluJ SINE Alu -171 131 1 1847 145 0 26 chr4 27711687 27711997 -174616350 - AluSx SINE Alu -10 302 1 440 289 54 12 chr4 27712134 27712300 -174616047 + MIR SINE MIR 33 205 -57 187 261 22 0 chr4 27712355 27712401 -174615946 - L3 LINE CR1 -204 1373 1327 1171 178 15 5 chr4 27712415 27712612 -174615735 - MLT1C LTR MaLR 0 467 269 315 49 0 0 chr4 27712808 27712849 -174615498 + (TG)n Simple_repeat Simple_repeat 2 42 0 1818 122 0 34 chr4 27712849 27713144 -174615203 - AluSx SINE Alu -27 285 1 306 339 0 57 chr4 27713152 27713248 -174615099 - L3 LINE CR1 -820 757 668 2290 173 106 36 chr4 27713248 27713775 -174614572 - LTR6A LTR ERV1 0 564 1 306 339 0 57 chr4 27713775 27713802 -174614545 - L3 LINE CR1 -909 668 641 560 196 51 38 chr4 27713857 27714015 -174614332 + MER106B DNA MER1_type 897 1056 -3 636 81 0 0 chr4 27714195 27714282 -174614065 + (TCTCC)n Simple_repeat Simple_repeat 2 88 0 1475 137 0 4 chr4 27714282 27714508 -174613839 - AluSg/x SINE Alu -3 309 85 21 0 0 0 chr4 27714684 27714705 -174613642 + AT_rich Low_complexity Low_complexity 1 21 0 1241 118 0 6 chr4 27714815 27714993 -174613354 + AluSg/x SINE Alu 110 286 -24 2122 135 0 0 chr4 27715108 27715420 -174612927 + AluJb SINE Alu 1 312 0 219 246 123 0 chr4 27715468 27715525 -174612822 - MIR SINE MIR -2 260 197 216 0 0 0 chr4 27715914 27715938 -174612409 + (T)n Simple_repeat Simple_repeat 1 24 0 691 185 0 8 chr4 27715989 27716108 -174612239 + AluSq/x SINE Alu 33 150 -163 951 118 139 145 chr4 27716213 27716372 -174611975 + Charlie5 DNA MER1_type 530 688 -1936 1936 116 10 3 chr4 27716372 27716665 -174611682 + AluSp SINE Alu 1 295 -18 951 118 139 145 chr4 27716665 27716836 -174611511 + Charlie5 DNA MER1_type 688 858 -1766 1334 189 3 46 chr4 27716899 27717206 -174611141 - AluJo SINE Alu -18 294 1 323 178 0 27 chr4 27717225 27717298 -174611049 + Charlie5 DNA MER1_type 834 904 -1708 1965 131 3 7 chr4 27717482 27717788 -174610559 + AluSg SINE Alu 1 305 -5 1153 132 0 0 chr4 27718280 27718454 -174609893 + AluSg/x SINE Alu 137 310 -2 1132 95 12 12 chr4 27718563 27718732 -174609615 + AluSq SINE Alu 1 169 -144 1146 104 0 0 chr4 27718832 27719015 -174609332 + AluSq SINE Alu 130 312 0 1361 251 81 26 chr4 27719037 27719142 -174609205 + L1ME3A LINE L1 5383 5481 -689 2077 126 10 0 chr4 27719142 27719436 -174608911 + AluSx SINE Alu 1 297 -15 1361 251 81 26 chr4 27719436 27719863 -174608484 + L1ME3A LINE L1 5481 5944 -226 1069 221 108 82 chr4 27720029 27720409 -174607938 - L2 LINE L2 0 3313 2924 276 261 238 0 chr4 27720693 27720836 -174607511 + MIR SINE MIR 24 203 -59 2169 106 0 3 chr4 27720988 27721289 -174607058 - AluSx SINE Alu -12 300 1 669 191 23 118 chr4 27721441 27721477 -174606870 + MER4D LTR ERV1 684 722 -181 1737 158 6 22 chr4 27721477 27721794 -174606553 - AluJb SINE Alu 0 312 1 669 191 23 118 chr4 27721794 27721977 -174606370 + MER4D LTR ERV1 722 882 -21 2258 43 4 0 chr4 27721978 27722257 -174606090 + AluY SINE Alu 1 280 -31 207 0 0 0 chr4 27722260 27722283 -174606064 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2089 106 0 0 chr4 27722503 27722795 -174605552 + AluSx SINE Alu 1 292 -20 189 0 0 0 chr4 27722845 27722866 -174605481 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 287 273 0 61 chr4 27723329 27723461 -174604886 - L2 LINE L2 -223 3049 2926 696 212 106 20 chr4 27723736 27723789 -174604558 - L1MC4 LINE L1 -399 7643 7596 489 34 0 0 chr4 27723789 27723848 -174604499 + (TCTA)n Simple_repeat Simple_repeat 1 59 0 696 212 106 20 chr4 27723848 27723992 -174604355 - L1MC4 LINE L1 -446 7596 7429 2182 109 0 0 chr4 27724543 27724845 -174603502 + AluSx SINE Alu 1 302 -10 599 185 17 34 chr4 27724845 27724964 -174603383 - FLAM_A SINE Alu -16 117 1 620 266 18 53 chr4 27724970 27725196 -174603151 + L2 LINE L2 3095 3312 -1 2011 119 3 0 chr4 27725562 27725857 -174602490 + AluSx SINE Alu 2 297 -15 340 244 131 50 chr4 27726387 27726547 -174601800 + MIR SINE MIR 89 261 -1 2108 122 0 0 chr4 27726623 27726919 -174601428 - AluSx SINE Alu -16 296 1 21 36 0 0 chr4 27726999 27727027 -174601320 + AT_rich Low_complexity Low_complexity 1 28 0 198 77 19 39 chr4 27727121 27727173 -174601174 + (TTTTTA)n Simple_repeat Simple_repeat 3 53 0 1934 210 60 29 chr4 27727274 27727760 -174600587 - L1ME1 LINE L1 -279 5887 5387 2142 116 0 10 chr4 27727760 27728070 -174600277 - AluSx SINE Alu -5 307 1 2372 94 0 0 chr4 27728070 27728377 -174599970 - AluSc SINE Alu -1 308 1 1825 129 14 7 chr4 27728483 27728807 -174599540 - AluSx SINE Alu 0 333 8 854 150 0 0 chr4 27729298 27729425 -174598922 + FLAM_C SINE Alu 1 127 -6 2067 52 37 80 chr4 27729446 27729770 -174598577 + AluY SINE Alu 1 310 -1 535 221 111 102 chr4 27729853 27729941 -174598406 - MIR SINE MIR -33 229 143 2104 100 0 7 chr4 27729941 27730232 -174598115 - AluSg SINE Alu -21 289 1 535 221 111 102 chr4 27730232 27730369 -174597978 - MIR SINE MIR -119 143 2 571 133 22 172 chr4 27730644 27730824 -174597523 - L2 LINE L2 -50 3263 3111 1476 156 28 38 chr4 27730845 27731165 -174597182 + L1MC2 LINE L1 6025 6341 -3 213 65 0 0 chr4 27731186 27731217 -174597130 + (A)n Simple_repeat Simple_repeat 1 31 0 221 284 21 84 chr4 27731948 27732043 -174596304 - L2 LINE L2 -56 3216 3128 1411 234 46 9 chr4 27732106 27732284 -174596063 + MLT1A2 LTR MaLR 1 171 -203 297 0 0 0 chr4 27732284 27732317 -174596030 + (TC)n Simple_repeat Simple_repeat 2 34 0 1411 234 46 9 chr4 27732317 27732488 -174595859 + MLT1A2 LTR MaLR 171 363 -11 346 349 34 0 chr4 27732930 27733073 -174595274 + MIR SINE MIR 23 176 -32 799 226 12 0 chr4 27733078 27733242 -174595105 + L1ME LINE L1 5504 5669 -493 2139 89 7 0 chr4 27733243 27733679 -174594668 + AluSp SINE Alu 1 438 0 4759 121 41 5 chr4 27733686 27734744 -174593603 + L1MA3 LINE L1 4859 6092 -213 1921 88 3 103 chr4 27734940 27735271 -174593076 + AluSc SINE Alu 1 298 -11 1290 173 90 25 chr4 27735276 27735553 -174592794 - AluJb SINE Alu -16 296 2 275 256 135 38 chr4 27736412 27736545 -174591802 + MIR SINE MIR 46 191 -71 1560 190 31 0 chr4 27736662 27736951 -174591396 + AluJo SINE Alu 1 298 -14 804 140 0 22 chr4 27736953 27737089 -174591258 + AluJo/FLAM SINE Alu 1 133 -169 2144 108 13 3 chr4 27737089 27737396 -174590951 + AluSg SINE Alu 1 310 0 535 306 52 5 chr4 27737757 27737950 -174590397 - MIR SINE MIR -42 220 19 1750 95 0 28 chr4 27737994 27738074 -174590273 + AluSx SINE Alu 60 141 -171 2360 63 3 0 chr4 27738074 27738374 -174589973 + AluY SINE Alu 1 301 -10 1750 95 0 28 chr4 27738374 27738545 -174589802 + AluSx SINE Alu 141 304 -8 744 146 24 0 chr4 27738886 27739009 -174589338 - FLAM_A SINE Alu -4 129 4 185 271 84 56 chr4 27739763 27739870 -174588477 - MIR SINE MIR -116 146 37 362 193 0 12 chr4 27739911 27739994 -174588353 + GA-rich Low_complexity Low_complexity 5 86 0 550 255 138 11 chr4 27741075 27741263 -174587084 + MIR SINE MIR 9 220 -42 23 0 0 0 chr4 27741524 27741547 -174586800 + AT_rich Low_complexity Low_complexity 1 23 0 747 154 0 8 chr4 27741555 27741672 -174586675 + FLAM_C SINE Alu 10 125 -18 375 234 109 63 chr4 27741710 27741885 -174586462 - L1ME3 LINE L1 -70 6092 5910 245 167 125 0 chr4 27741886 27741934 -174586413 + MER63B DNA MER1_type 1 54 -382 491 178 0 9 chr4 27741941 27742048 -174586299 + GA-rich Low_complexity Low_complexity 3 108 0 1322 228 41 33 chr4 27742048 27742085 -174586262 + MER63B DNA MER1_type 40 75 -987 2432 56 0 0 chr4 27742085 27742387 -174585960 - AluY SINE Alu -9 302 1 1322 228 41 33 chr4 27742387 27742743 -174585604 + MER63B DNA MER1_type 75 436 0 1373 218 50 82 chr4 27742743 27742817 -174585530 - L1ME3 LINE L1 -246 5916 5841 1639 183 7 0 chr4 27742817 27743107 -174585240 - AluJb SINE Alu -20 292 1 1373 218 50 82 chr4 27743107 27743555 -174584792 - L1ME3 LINE L1 -321 5841 5411 473 167 0 0 chr4 27743577 27743649 -174584698 - AluJ/FLAM SINE Alu -239 73 2 386 319 34 8 chr4 27743654 27743773 -174584574 - L1ME4a LINE L1 -5 6116 5995 336 210 190 0 chr4 27743788 27743888 -174584459 - L1ME4a LINE L1 -237 5884 5766 1873 114 62 3 chr4 27744125 27744414 -174583933 + AluSx SINE Alu 1 306 -6 1003 144 0 17 chr4 27744414 27744587 -174583760 + AluSc SINE Alu 132 301 -8 518 224 121 24 chr4 27744676 27744841 -174583506 + MIR SINE MIR 32 212 -50 1734 131 33 33 chr4 27745800 27746105 -174582242 - AluSq SINE Alu -6 307 3 317 347 67 20 chr4 27746139 27746439 -174581908 + L2 LINE L2 1804 2117 -1197 440 283 18 60 chr4 27747136 27747218 -174581129 + MER20B DNA MER1_type 95 168 -615 1995 122 17 0 chr4 27747218 27747513 -174580834 + AluSx SINE Alu 3 302 -10 440 283 18 60 chr4 27747513 27747596 -174580751 + MER20B DNA MER1_type 168 253 -530 2022 116 10 0 chr4 27747596 27747889 -174580458 + AluSx SINE Alu 1 296 -16 364 323 83 47 chr4 27748091 27748283 -174580064 + MER20B DNA MER1_type 355 553 -230 280 400 44 0 chr4 27748417 27748577 -174579770 + L2 LINE L2 3076 3242 -30 635 180 29 43 chr4 27749325 27749464 -174578883 - FLAM_C SINE Alu -2 141 5 310 273 148 23 chr4 27749467 27749595 -174578752 + MIR SINE MIR 113 256 -6 1829 138 7 10 chr4 27749811 27750115 -174578232 + AluJo SINE Alu 1 303 -9 484 234 81 24 chr4 27750351 27750475 -174577872 + L2 LINE L2 3142 3272 0 329 138 31 0 chr4 27751361 27751426 -174576921 + GA-rich Low_complexity Low_complexity 2 68 0 27 62 0 0 chr4 27751449 27751497 -174576850 + AT_rich Low_complexity Low_complexity 1 48 0 1736 121 0 4 chr4 27751669 27751918 -174576429 + AluSq SINE Alu 1 248 -65 27 0 0 0 chr4 27752136 27752163 -174576184 + AT_rich Low_complexity Low_complexity 1 27 0 330 127 48 55 chr4 27752187 27752259 -174576088 + (TATAA)n Simple_repeat Simple_repeat 1 72 -494 1866 135 0 7 chr4 27752259 27752556 -174575791 - AluSx SINE Alu -17 295 1 330 127 48 55 chr4 27752556 27752757 -174575590 + (TATAA)n Simple_repeat Simple_repeat 72 566 0 436 163 60 36 chr4 27752820 27753026 -174575321 + (TATAA)n Simple_repeat Simple_repeat 1 210 0 1583 186 7 0 chr4 27753130 27753421 -174574926 + AluJb SINE Alu 6 298 -14 299 264 48 40 chr4 27753483 27753608 -174574739 - L1M4 LINE L1 -387 5791 5666 2102 110 7 0 chr4 27753683 27753984 -174574363 - AluSx SINE Alu -1 311 9 460 324 86 33 chr4 27754606 27754816 -174573531 - L1MEd LINE L1 -5054 1065 845 853 200 17 6 chr4 27755085 27755310 -174573037 - AluJb SINE Alu 0 335 109 1713 174 10 3 chr4 27755392 27755691 -174572656 - AluJo SINE Alu -11 301 1 295 295 33 25 chr4 27756112 27756234 -174572113 + MIR SINE MIR 93 215 -47 1929 106 4 15 chr4 27756409 27756683 -174571664 + AluSx SINE Alu 1 271 -41 1919 134 7 14 chr4 27756811 27757132 -174571215 + AluSx SINE Alu 1 319 0 738 228 0 0 chr4 27757168 27757295 -174571052 + AluJo SINE Alu 1 127 -175 1234 174 5 10 chr4 27757311 27757512 -174570835 + AluJb SINE Alu 1 200 -112 225 0 0 0 chr4 27757651 27757676 -174570671 + (T)n Simple_repeat Simple_repeat 1 25 0 1295 33 5 27 chr4 27758368 27758552 -174569795 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 818 174 7 27 chr4 27758666 27758815 -174569532 + AluJo SINE Alu 137 282 -30 227 79 26 0 chr4 27758817 27758855 -174569492 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 2115 131 3 16 chr4 27758946 27759259 -174569088 - AluSx SINE Alu -3 309 1 254 256 61 12 chr4 27759330 27759412 -174568935 - MIR SINE MIR 0 262 177 254 261 65 22 chr4 27759429 27759521 -174568826 + MIR SINE MIR 142 237 -25 254 268 179 27 chr4 27759545 27759657 -174568690 - MIR SINE MIR -105 157 29 1545 173 87 10 chr4 27760493 27760782 -174567565 - AluJo SINE Alu 0 312 2 387 0 0 0 chr4 27760846 27760889 -174567458 + (TG)n Simple_repeat Simple_repeat 2 44 0 706 206 40 58 chr4 27760899 27761122 -174567225 - L1ME1 LINE L1 -5 6161 5943 2176 103 14 0 chr4 27761127 27761418 -174566929 - AluSx SINE Alu -17 295 1 1095 117 7 0 chr4 27761542 27761687 -174566660 - AluSq/x SINE Alu -166 146 1 22 56 0 0 chr4 27761740 27761776 -174566571 + AT_rich Low_complexity Low_complexity 1 36 0 1609 118 46 102 chr4 27761835 27762158 -174566189 + MER7A DNA MER2_type 1 303 -43 2222 120 3 25 chr4 27762160 27762476 -174565871 - AluSg SINE Alu -1 309 1 712 179 247 12 chr4 27762476 27762638 -174565709 - AluSc SINE Alu -108 201 2 458 252 243 0 chr4 27762638 27762844 -174565503 + L2 LINE L2 3051 3306 -7 939 197 0 0 chr4 27762845 27762997 -174565350 + AluJb SINE Alu 138 289 -23 2080 121 7 0 chr4 27763223 27763528 -174564819 - AluSq SINE Alu 0 307 1 459 224 6 126 chr4 27763732 27763798 -174564549 + MIR SINE MIR 2 74 -188 570 234 138 0 chr4 27763798 27763943 -174564404 - FRAM SINE Alu -1 165 1 459 224 6 126 chr4 27763943 27764013 -174564334 + MIR SINE MIR 74 113 -149 1887 129 6 31 chr4 27764013 27764330 -174564017 - AluSg SINE Alu -1 309 1 459 224 6 126 chr4 27764330 27764375 -174563972 + MIR SINE MIR 113 162 -100 2110 144 0 0 chr4 27764478 27764783 -174563564 + AluSq SINE Alu 2 306 -7 376 308 99 17 chr4 27764890 27765062 -174563285 + MIR SINE MIR 7 192 -70 2145 143 7 0 chr4 27765233 27765540 -174562807 + AluSx SINE Alu 3 311 -1 286 293 96 60 chr4 27765712 27765879 -174562468 - L3 LINE CR1 -72 1505 1333 2395 67 7 3 chr4 27766261 27766560 -174561787 - AluY SINE Alu -11 300 1 734 270 91 59 chr4 27766835 27767274 -174561073 - MARNA DNA Mariner -68 518 60 2395 94 10 0 chr4 27767274 27767581 -174560766 - AluSx SINE Alu -2 310 1 734 270 91 59 chr4 27767581 27767634 -174560713 - MARNA DNA Mariner -526 60 10 2065 129 13 19 chr4 27768136 27768445 -174559902 - AluSx SINE Alu -5 307 1 2375 95 3 0 chr4 27768874 27769170 -174559177 + AluSg SINE Alu 1 297 -13 181 262 94 81 chr4 27769305 27769454 -174558893 - MIR SINE MIR -21 241 91 2402 94 3 0 chr4 27769462 27769760 -174558587 + AluSx SINE Alu 5 303 -9 1210 148 0 0 chr4 27769760 27769936 -174558411 + AluSp SINE Alu 134 309 -4 245 222 37 0 chr4 27769937 27769991 -174558356 - MIR SINE MIR -165 97 42 647 215 7 22 chr4 27770343 27770478 -174557869 + MIR SINE MIR 32 164 -98 204 40 0 0 chr4 27770616 27770641 -174557706 + (T)n Simple_repeat Simple_repeat 1 25 0 643 162 86 0 chr4 27770654 27770759 -174557588 + AluSg SINE Alu 2 115 -195 286 168 4 55 chr4 27770769 27770868 -174557479 - Alu SINE Alu 0 302 243 837 263 48 82 chr4 27771444 27771798 -174556549 + L2 LINE L2 2931 3272 0 582 194 56 0 chr4 27771889 27771997 -174556350 + FRAM SINE Alu 1 113 -63 2190 112 0 10 chr4 27772099 27772402 -174555945 - AluSq SINE Alu -13 300 1 1983 139 0 27 chr4 27772410 27772705 -174555642 - AluSx SINE Alu -25 287 1 577 152 0 0 chr4 27772705 27772784 -174555563 - AluJ/FLAM SINE Alu -230 82 4 2005 139 10 7 chr4 27773968 27774263 -174554084 + AluSx SINE Alu 1 296 -16 32 0 0 0 chr4 27774373 27774405 -174553942 + AT_rich Low_complexity Low_complexity 1 32 0 568 167 0 0 chr4 27774410 27774512 -174553835 + AluJb SINE Alu 208 309 -3 2132 106 0 7 chr4 27774512 27774796 -174553551 - AluSx SINE Alu -30 282 1 1833 277 167 17 chr4 27774928 27775224 -174553123 + L2 LINE L2 1772 2022 -1291 895 225 120 0 chr4 27775224 27775424 -174552923 + MER58A DNA MER1_type 1 224 0 1833 277 167 17 chr4 27775424 27776183 -174552164 + L2 LINE L2 2022 2997 -316 960 91 8 0 chr4 27776189 27776310 -174552037 - AluSq/x SINE Alu -179 133 12 1930 164 3 7 chr4 27776324 27776634 -174551713 - AluSc SINE Alu 0 309 1 660 143 0 0 chr4 27776923 27777063 -174551284 + (CA)n Simple_repeat Simple_repeat 2 141 0 181 45 0 0 chr4 27777362 27777384 -174550963 - MIR SINE MIR -119 143 122 2218 103 13 0 chr4 27777675 27777975 -174550372 - AluSp SINE Alu -9 304 1 1054 172 0 11 chr4 27778384 27778558 -174549789 - AluJb SINE Alu -4 308 137 204 358 150 8 chr4 27778561 27778681 -174549666 - MER5B DNA MER1_type -39 139 3 387 230 115 0 chr4 27778700 27778787 -174549560 + MER5A DNA MER1_type 10 106 -83 436 197 98 23 chr4 27779127 27779259 -174549088 + MER51B LTR ERV1 1 142 -235 1713 136 15 67 chr4 27779313 27779578 -174548769 + MER51B LTR ERV1 64 341 -36 252 0 0 0 chr4 27779578 27779606 -174548741 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 2175 84 3 28 chr4 27779614 27779898 -174548449 - AluSx SINE Alu -35 277 1 1713 136 15 67 chr4 27779898 27779954 -174548393 + MER51B LTR ERV1 348 377 0 624 218 6 86 chr4 27780134 27780261 -174548086 - MER5B DNA MER1_type 0 178 67 2282 104 7 0 chr4 27780261 27780559 -174547788 - AluSx SINE Alu -12 300 1 624 218 6 86 chr4 27780559 27780605 -174547742 - MER5B DNA MER1_type -111 67 19 2187 116 3 19 chr4 27780674 27780984 -174547363 - AluSx SINE Alu -7 305 1 1868 156 31 3 chr4 27780986 27781274 -174547073 - AluSx SINE Alu -16 296 1 573 194 25 38 chr4 27781444 27781604 -174546743 - MER53 DNA DNA -19 170 13 2185 106 3 0 chr4 27782186 27782498 -174545849 + AluSx SINE Alu 1 313 0 410 299 128 62 chr4 27782532 27783220 -174545127 - L2 LINE L2 -76 3196 2450 237 330 31 10 chr4 27783266 27783363 -174544984 + L2 LINE L2 2251 2349 -965 779 185 0 0 chr4 27783396 27783515 -174544832 + AluSq/x SINE Alu 2 120 -193 27 0 0 0 chr4 27783515 27783542 -174544805 + AT_rich Low_complexity Low_complexity 1 27 0 707 196 139 59 chr4 27783542 27783834 -174544513 - MER34C LTR ERV1 -12 530 205 2224 118 0 0 chr4 27783834 27784130 -174544217 + AluSx SINE Alu 3 298 -14 707 196 139 59 chr4 27784130 27784344 -174544003 - MER34C LTR ERV1 -337 205 9 242 318 68 61 chr4 27784439 27784571 -174543776 + MIR3 SINE MIR 55 187 -21 526 338 93 4 chr4 27784597 27784834 -174543513 + MIR SINE MIR 3 260 -2 2258 120 3 3 chr4 27784850 27785159 -174543188 + AluSc SINE Alu 1 309 0 951 257 41 8 chr4 27785246 27785491 -174542856 - MIR SINE MIR 0 262 10 1447 136 0 9 chr4 27785524 27785738 -174542609 + AluSx SINE Alu 1 212 -100 3797 89 39 10 chr4 27785765 27786761 -174541586 - MER11A LTR ERVK 0 1266 6 1227 115 5 50 chr4 27786761 27786961 -174541386 + AluSg/x SINE Alu 93 283 -27 315 49 0 0 chr4 27786961 27787002 -174541345 + (CA)n Simple_repeat Simple_repeat 2 42 0 1502 181 100 0 chr4 27787127 27787397 -174540950 + AluJo SINE Alu 1 297 -15 326 118 20 0 chr4 27787498 27787549 -174540798 - U7 snRNA snRNA -2 61 10 2350 94 0 25 chr4 27787564 27787884 -174540463 - AluSx SINE Alu 0 312 1 2216 124 0 19 chr4 27787894 27788208 -174540139 - AluSx SINE Alu 0 312 5 1874 162 7 10 chr4 27788212 27788509 -174539838 - AluJo SINE Alu -16 296 1 1759 172 0 36 chr4 27788538 27788840 -174539507 + AluJo SINE Alu 1 291 -21 2069 126 0 24 chr4 27788843 27789136 -174539211 + AluSx SINE Alu 2 287 -25 424 313 6 18 chr4 27789170 27789199 -174539148 + MER103 DNA DNA 2 30 -136 1554 53 0 0 chr4 27789199 27789387 -174538960 + L1PA5 LINE L1 5962 6149 -5 424 313 6 18 chr4 27789387 27789523 -174538824 + MER103 DNA DNA 30 165 -1 876 172 0 0 chr4 27789669 27789803 -174538544 - AluJo SINE Alu -178 134 1 184 324 59 15 chr4 27789981 27790049 -174538298 - MER5B DNA MER1_type -39 139 69 311 268 42 0 chr4 27790115 27790186 -174538161 + MER5A DNA MER1_type 3 76 -113 2141 131 0 3 chr4 27790186 27790484 -174537863 + AluSx SINE Alu 1 297 -15 398 209 209 80 chr4 27790510 27790619 -174537728 + MER102b DNA MER1_type 155 293 -1135 489 34 0 0 chr4 27790619 27790678 -174537669 + (TTATA)n Simple_repeat Simple_repeat 1 59 0 398 209 209 80 chr4 27790678 27790731 -174537616 + MER102b DNA MER1_type 293 338 -3 260 230 74 27 chr4 27790826 27790974 -174537373 - L1ME4a LINE L1 -1 6120 5966 1635 185 7 30 chr4 27791389 27791692 -174536655 + AluJb SINE Alu 1 296 -16 2289 103 10 7 chr4 27791809 27792110 -174536237 + AluSx SINE Alu 1 302 -10 180 77 0 0 chr4 27792162 27792188 -174536159 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 2183 103 0 0 chr4 27792192 27792474 -174535873 - AluSg1 SINE Alu -27 282 1 1485 183 15 7 chr4 27792474 27792748 -174535599 - AluJo SINE Alu -12 300 25 1437 172 26 63 chr4 27792777 27793080 -174535267 - AluJb SINE Alu -20 292 1 2043 158 7 0 chr4 27793144 27793454 -174534893 - AluSx SINE Alu 0 312 1 699 311 111 26 chr4 27793475 27793661 -174534686 - L3 LINE CR1 -4 1573 1404 2350 88 0 10 chr4 27793661 27793956 -174534391 + AluSx SINE Alu 1 292 -20 699 311 111 26 chr4 27793956 27794155 -174534192 - L3 LINE CR1 -173 1404 1155 292 255 20 20 chr4 27794307 27794405 -174533942 - MLT1K LTR MaLR -2 586 489 2448 70 10 16 chr4 27794443 27794756 -174533591 + AluY SINE Alu 1 311 0 1693 170 245 44 chr4 27794788 27794890 -174533457 - LTR29 LTR ERV1 0 622 542 2185 126 3 3 chr4 27794890 27795200 -174533147 - AluSx SINE Alu -2 310 1 1693 170 245 44 chr4 27795200 27795375 -174532972 - LTR29 LTR ERV1 -80 542 403 2243 122 0 3 chr4 27795375 27795679 -174532668 + AluSx SINE Alu 1 303 -9 1693 170 245 44 chr4 27795679 27795918 -174532429 - LTR29 LTR ERV1 -219 403 1 2112 133 7 3 chr4 27796017 27796318 -174532029 + AluSx SINE Alu 1 302 -10 875 144 17 72 chr4 27796318 27796499 -174531848 + AluJb SINE Alu 134 304 -8 448 329 79 20 chr4 27796512 27796804 -174531543 - MLT1K LTR MaLR -244 344 36 2139 140 0 25 chr4 27796829 27797150 -174531197 - AluSq SINE Alu 0 313 1 290 340 0 0 chr4 27797151 27797251 -174531096 - MIR SINE MIR -102 160 61 725 112 0 0 chr4 27797251 27797349 -174530998 + AluS SINE Alu 2 99 -213 1766 110 12 0 chr4 27797461 27797706 -174530641 - AluSg SINE Alu -62 248 1 371 344 92 40 chr4 27797731 27797958 -174530389 + L1ME LINE L1 5581 5819 -302 1073 90 0 0 chr4 27797970 27798104 -174530243 + AluYb8 SINE Alu 1 134 -184 2136 116 3 0 chr4 27798104 27798389 -174529958 + AluY SINE Alu 1 286 -25 1313 182 13 63 chr4 27798496 27798656 -174529691 + MLT1A1 LTR MaLR 1 139 -226 1627 149 8 0 chr4 27798656 27798898 -174529449 + AluSg/x SINE Alu 67 310 -2 1313 182 13 63 chr4 27798898 27799055 -174529292 + MLT1A1 LTR MaLR 139 302 -63 200 0 100 0 chr4 27799068 27799098 -174529249 + T-rich Low_complexity Low_complexity 3 35 0 2308 110 0 0 chr4 27799100 27799408 -174528939 - AluSq SINE Alu -5 308 1 239 167 0 0 chr4 27799408 27799456 -174528891 + MLT1A1 LTR MaLR 304 351 -14 278 294 54 22 chr4 27799806 27799898 -174528449 - MIR SINE MIR -128 134 40 1003 185 28 32 chr4 27800148 27800364 -174527983 + MER20 DNA MER1_type 5 219 0 2289 125 0 0 chr4 27800831 27801143 -174527204 - AluSx SINE Alu 0 312 1 2267 113 0 0 chr4 27801166 27801457 -174526890 - AluSg SINE Alu -19 291 1 189 338 14 40 chr4 27801457 27801605 -174526742 + L2 LINE L2 1970 2113 -1201 182 61 0 30 chr4 27802291 27802324 -174526023 + (TTTTTA)n Simple_repeat Simple_repeat 4 35 0 2003 151 0 6 chr4 27802329 27802640 -174525707 - AluSx SINE Alu -3 309 1 2170 117 7 13 chr4 27802675 27802983 -174525364 + AluSp SINE Alu 1 306 -7 21 36 0 0 chr4 27803187 27803215 -174525132 + AT_rich Low_complexity Low_complexity 1 28 0 1866 120 58 0 chr4 27803488 27803786 -174524561 + AluSx SINE Alu 1 312 0 2428 55 34 7 chr4 27803840 27804132 -174524215 + AluY SINE Alu 1 300 -11 2106 151 0 0 chr4 27804134 27804433 -174523914 + AluSx SINE Alu 1 299 -13 23 0 0 0 chr4 27804433 27804456 -174523891 + AT_rich Low_complexity Low_complexity 1 23 0 2126 141 3 3 chr4 27804984 27805296 -174523051 - AluSx SINE Alu 0 312 1 977 181 86 19 chr4 27805458 27805668 -174522679 + AluJo SINE Alu 88 311 -1 1222 130 0 0 chr4 27805912 27806074 -174522273 - AluSx SINE Alu -149 163 2 471 300 196 19 chr4 27806180 27806619 -174521728 - L2 LINE L2 -229 3084 2724 584 191 27 0 chr4 27806619 27806729 -174521618 + MER81 DNA DNA 2 114 0 471 300 196 19 chr4 27806729 27806912 -174521435 - L2 LINE L2 -589 2724 2349 21 0 0 0 chr4 27807847 27807868 -174520479 + AT_rich Low_complexity Low_complexity 1 21 0 * 611 199 12 35 chr4 27807856 27807868 -174520479 + MER96B DNA MER1_type? 250 261 -156 2184 117 0 0 chr4 27807868 27808151 -174520196 + AluSx SINE Alu 1 283 -29 611 199 12 35 chr4 27808151 27808309 -174520038 + MER96B DNA MER1_type? 261 416 -1 868 173 0 0 chr4 27808368 27808501 -174519846 - FLAM_C SINE Alu -10 133 1 195 42 0 0 chr4 27808513 27808537 -174519810 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1350 133 25 0 chr4 27808538 27808723 -174519624 - AluSp SINE Alu 0 317 124 2424 95 3 9 chr4 27808723 27809038 -174519309 - AluSp SINE Alu 0 313 1 1350 133 25 0 chr4 27809038 27809080 -174519267 - AluSp SINE Alu -193 124 85 2212 127 7 0 chr4 27809337 27809645 -174518702 + AluSx SINE Alu 1 310 -2 1338 179 19 4 chr4 27809903 27810222 -174518125 + MLT1A1 LTR MaLR 3 365 0 1563 113 9 5 chr4 27810664 27810876 -174517471 + AluSx SINE Alu 2 214 -98 2200 82 41 10 chr4 27810878 27811172 -174517175 + AluYa5 SINE Alu 1 303 -8 602 152 0 45 chr4 27811172 27811284 -174517063 + AluSx SINE Alu 203 309 0 323 289 33 0 chr4 27811323 27811413 -174516934 + MIR SINE MIR 85 177 -85 651 246 22 39 chr4 27811464 27811643 -174516704 - MIR SINE MIR -22 240 65 2178 141 0 0 chr4 27811766 27812078 -174516269 + AluJo SINE Alu 1 312 0 25 0 0 0 chr4 27812078 27812103 -174516244 + AT_rich Low_complexity Low_complexity 1 25 0 311 324 152 25 chr4 27812122 27812557 -174515790 + L2 LINE L2 2372 2861 -453 242 200 0 0 chr4 27812559 27812604 -174515743 - L2 LINE L2 -7 3306 3262 361 393 78 16 chr4 27812654 27812911 -174515436 + L2 LINE L2 2986 3258 -14 1565 184 42 0 chr4 27812912 27813200 -174515147 + AluJb SINE Alu 1 300 -12 1750 191 0 16 chr4 27813212 27813516 -174514831 + AluJo SINE Alu 2 300 -12 425 186 233 0 chr4 27813551 27813637 -174514710 + FLAM_A SINE Alu 1 106 -36 224 181 24 36 chr4 27813658 27813686 -174514661 + (TA)n Simple_repeat Simple_repeat 2 29 -54 2344 98 3 0 chr4 27813686 27813981 -174514366 + AluSp SINE Alu 1 296 -17 224 181 24 36 chr4 27813981 27814035 -174514312 + (TA)n Simple_repeat Simple_repeat 29 83 0 357 333 17 0 chr4 27814339 27814456 -174513891 - MER5B DNA MER1_type -3 175 57 1203 209 112 43 chr4 27814457 27814734 -174513613 - AluJo SINE Alu -5 297 2 1982 142 14 0 chr4 27814755 27815043 -174513304 - AluJb SINE Alu -20 292 1 1127 192 28 14 chr4 27815081 27815295 -174513052 + AluJo SINE Alu 87 303 -9 182 250 28 0 chr4 27815295 27815331 -174513016 - MER5B DNA MER1_type -133 45 9 2185 116 0 3 chr4 27815593 27815887 -174512460 + AluSx SINE Alu 1 293 -19 1142 158 0 0 chr4 27815893 27816058 -174512289 + AluSg/x SINE Alu 130 294 -18 1077 141 86 0 chr4 27816058 27816256 -174512091 + MLT1B LTR MaLR 176 390 0 896 138 0 38 chr4 27816417 27816599 -174511748 + L1PA10 LINE L1 5995 6170 0 1097 122 11 75 chr4 27816619 27816803 -174511544 - AluJ SINE Alu 0 307 135 2104 121 30 3 chr4 27816803 27817100 -174511247 - AluSx SINE Alu -5 307 3 1097 122 11 75 chr4 27817100 27817127 -174511220 - AluJ SINE Alu -172 135 108 1208 133 6 0 chr4 27817133 27817306 -174511041 + AluSq SINE Alu 136 309 -4 747 179 0 8 chr4 27817307 27817424 -174510923 - AluJ SINE Alu -195 117 2 1106 239 13 32 chr4 27817475 27817851 -174510496 - MER113 DNA MER1_type? -152 369 1 220 211 0 0 chr4 27818047 27818085 -174510262 + L2 LINE L2 3225 3262 -51 837 177 0 108 chr4 27818149 27818352 -174509995 - AluJo SINE Alu -12 300 120 915 201 0 18 chr4 27818357 27818526 -174509821 - FRAM SINE Alu 0 166 1 445 235 12 100 chr4 27819438 27819532 -174508815 - L2 LINE L2 0 3313 3212 828 191 0 0 chr4 27819532 27819658 -174508689 + FLAM_A SINE Alu 5 130 -3 445 235 12 100 chr4 27819658 27819677 -174508670 - L2 LINE L2 -101 3212 3193 2112 118 11 0 chr4 27819677 27819987 -174508360 - AluSx SINE Alu 0 313 1 445 235 12 100 chr4 27819987 27820041 -174508306 - L2 LINE L2 -120 3193 3159 24 0 0 0 chr4 27820045 27820069 -174508278 + AT_rich Low_complexity Low_complexity 1 24 0 2303 110 0 3 chr4 27820777 27821086 -174507261 - AluSx SINE Alu -4 308 1 1621 158 0 52 chr4 27821610 27821901 -174506446 + AluSx SINE Alu 29 304 -8 797 146 0 76 chr4 27823081 27823225 -174505122 + FLAM_C SINE Alu 1 133 0 2280 119 3 0 chr4 27823339 27823649 -174504698 + AluSx SINE Alu 1 311 -1 1123 136 0 0 chr4 27823861 27824023 -174504324 - AluSg/x SINE Alu -12 298 137 809 171 0 27 chr4 27825059 27825205 -174503142 - FLAM_C SINE Alu -1 142 1 1879 143 0 14 chr4 27825239 27825526 -174502821 - AluSx SINE Alu -29 283 1 3889 107 37 90 chr4 27825616 27825798 -174502549 - LTR8 LTR ERV1 0 691 501 1637 79 120 0 chr4 27825798 27826014 -174502333 - AluY SINE Alu -23 288 47 3889 107 37 90 chr4 27826014 27826561 -174501786 - LTR8 LTR ERV1 -190 501 1 2254 112 16 0 chr4 27826633 27826936 -174501411 - AluSx SINE Alu -4 308 1 1881 150 3 30 chr4 27826938 27827238 -174501109 - AluJb SINE Alu -20 292 1 265 291 12 139 chr4 27827319 27827441 -174500906 + L2 LINE L2 3040 3135 -137 2017 136 20 13 chr4 27827441 27827742 -174500605 + AluSx SINE Alu 1 303 -9 265 291 12 139 chr4 27827742 27827791 -174500556 + L2 LINE L2 3135 3189 -83 947 154 0 0 chr4 27827865 27828008 -174500339 + FLAM_C SINE Alu 1 143 0 403 241 14 189 chr4 27828174 27828283 -174500064 + MER45A DNA AcHobo 4 130 -1451 2384 88 13 0 chr4 27828283 27828589 -174499758 - AluSx SINE Alu -2 310 1 403 241 14 189 chr4 27828589 27828612 -174499735 + MER45A DNA AcHobo 130 89 -1492 2417 92 0 10 chr4 27828612 27828926 -174499421 - AluSp SINE Alu -2 311 1 403 241 14 189 chr4 27828926 27829004 -174499343 + MER45A DNA AcHobo 88 178 0 2360 94 0 3 chr4 27829172 27829471 -174498876 - AluSc SINE Alu -11 298 1 547 250 30 0 chr4 27829552 27829684 -174498663 - MER113 DNA MER1_type? -152 369 234 4986 78 38 0 chr4 27830069 27830732 -174497615 + LTR12 LTR ERV1 1 688 0 477 0 0 0 chr4 27831003 27831056 -174497291 + (TG)n Simple_repeat Simple_repeat 2 54 0 2214 96 3 3 chr4 27831059 27831350 -174496997 - AluSg SINE Alu -19 291 1 336 143 0 0 chr4 27831965 27832021 -174496326 + (T)n Simple_repeat Simple_repeat 1 56 0 1063 162 0 5 chr4 27832267 27832452 -174495895 + AluSg/x SINE Alu 126 309 -1 302 306 87 37 chr4 27833080 27833322 -174495025 - L1M2 LINE L1 -4852 1997 1744 554 231 75 15 chr4 27833364 27833498 -174494849 - FLAM_A SINE Alu 0 142 1 303 232 74 0 chr4 27834573 27834668 -174493679 + MIR SINE MIR 90 191 -71 1309 209 8 15 chr4 27834690 27834958 -174493389 - AluJo SINE Alu -23 289 24 2198 113 0 10 chr4 27834993 27835285 -174493062 + AluSg1 SINE Alu 1 289 -20 29 84 0 0 chr4 27835489 27835560 -174492787 + AT_rich Low_complexity Low_complexity 1 71 0 744 150 110 8 chr4 27835778 27835905 -174492442 - AluSq/x SINE Alu -171 141 2 274 299 55 8 chr4 27835906 27836033 -174492314 + Charlie8 DNA MER1_type 96 228 -2189 1368 172 28 88 chr4 27836087 27836407 -174491940 - AluJo SINE Alu -11 301 1 2071 108 14 0 chr4 27836459 27836737 -174491610 + AluSg SINE Alu 1 282 -28 384 22 0 0 chr4 27836737 27836782 -174491565 + (CA)n Simple_repeat Simple_repeat 2 46 0 1120 116 0 72 chr4 27836793 27836974 -174491373 + AluSg/x SINE Alu 135 302 -8 410 264 81 7 chr4 27838574 27838722 -174489625 + Charlie8 DNA MER1_type 107 265 -2152 2410 72 0 10 chr4 27838795 27839088 -174489259 - AluY SINE Alu -19 292 3 1514 149 138 0 chr4 27839115 27839383 -174488964 - AluSx SINE Alu -7 305 1 22 0 0 0 chr4 27839575 27839597 -174488750 + AT_rich Low_complexity Low_complexity 1 22 0 346 298 282 0 chr4 27840330 27840511 -174487836 - MIR SINE MIR -17 245 14 25 31 0 0 chr4 27841383 27841415 -174486932 + GC_rich Low_complexity Low_complexity 1 32 0 246 371 35 0 chr4 27842025 27842141 -174486206 + MIR SINE MIR 33 152 -56 761 202 0 0 chr4 27843585 27843704 -174484643 - FLAM_C SINE Alu -23 120 2 295 191 79 0 chr4 27843886 27843949 -174484398 + MIR SINE MIR 81 148 -114 365 252 108 18 chr4 27844043 27844154 -174484193 - L2 LINE L2 -9 3263 3143 204 139 0 23 chr4 27844710 27844753 -174483594 + (CCCCCA)n Simple_repeat Simple_repeat 5 46 0 361 276 166 20 chr4 27844954 27845153 -174483194 + MIR SINE MIR 14 241 -21 495 225 135 34 chr4 27845362 27845540 -174482807 - MIR SINE MIR 0 262 67 207 385 42 21 chr4 27845961 27846057 -174482290 - L2 LINE L2 -37 3235 3138 240 150 100 62 chr4 27846171 27846251 -174482096 - L1ME LINE L1 -475 5646 5564 2295 102 3 0 chr4 27846363 27846657 -174481690 - AluSq SINE Alu -18 295 1 425 270 120 40 chr4 27846932 27847132 -174481215 - MIR SINE MIR 0 262 47 2015 142 0 3 chr4 27847212 27847500 -174480847 - AluSq SINE Alu -26 287 1 2384 97 3 0 chr4 27847681 27847981 -174480366 - AluSq SINE Alu -9 304 4 2057 92 70 0 chr4 27848795 27849066 -174479281 - AluSg SINE Alu -20 290 1 283 267 67 27 chr4 27849202 27849277 -174479070 - L2 LINE L2 -39 3274 3197 305 246 94 58 chr4 27850239 27850377 -174477970 - MIR3 SINE MIR -11 197 55 2333 92 0 3 chr4 27850976 27851280 -174477067 - AluSp SINE Alu -10 303 1 196 255 75 75 chr4 27851333 27851427 -174476920 + MIR3 SINE MIR 79 172 -36 893 172 5 68 chr4 27852327 27852548 -174475799 - MER3 DNA MER1_type 0 209 3 686 102 102 55 chr4 27852714 27852841 -174475506 - FLAM_C SINE Alu 0 133 1 2182 138 3 0 chr4 27853042 27853353 -174474994 + AluSx SINE Alu 1 312 0 227 258 32 32 chr4 27853361 27853423 -174474924 - MER91A DNA MER1_type -134 62 1 286 260 87 47 chr4 27853981 27854108 -174474239 + MIR SINE MIR 119 250 -12 2302 81 37 0 chr4 27854183 27854478 -174473869 + AluSx SINE Alu 1 306 -6 825 160 0 0 chr4 27854944 27855094 -174473253 - L1MA4A LINE L1 -4 6299 6150 192 303 10 50 chr4 27855242 27855341 -174473006 + MIR SINE MIR 109 203 -59 1725 161 14 10 chr4 27855753 27856045 -174472302 + AluSx SINE Alu 1 293 -19 349 226 86 11 chr4 27857677 27857770 -174470577 - MIR SINE MIR -67 141 42 391 163 8 19 chr4 27857864 27858100 -174470247 + AluSx SINE Alu 1 292 -8 350 325 66 7 chr4 27858696 27858847 -174469500 - MLT1J LTR MaLR -343 168 9 272 326 163 31 chr4 27860512 27860708 -174467639 + L3 LINE CR1 1279 1500 -77 2084 125 0 3 chr4 27860832 27861143 -174467204 - AluSg SINE Alu 0 310 1 459 292 58 15 chr4 27861145 27861282 -174467065 + MIR SINE MIR 50 192 -70 353 184 116 23 chr4 27861323 27861516 -174466831 - Charlie5 DNA MER1_type -5 2607 2364 379 297 158 15 chr4 27861580 27861782 -174466565 + MIR SINE MIR 13 243 -19 250 244 12 12 chr4 27862337 27862423 -174465924 + (CTG)n Simple_repeat Simple_repeat 3 88 0 776 134 0 0 chr4 27864372 27864484 -174463863 - FLAM_C SINE Alu -23 120 9 23 0 0 0 chr4 27864496 27864519 -174463828 + AT_rich Low_complexity Low_complexity 1 23 0 275 146 0 0 chr4 27865013 27865054 -174463293 - MER45 DNA AcHobo -44 1537 1497 * 1612 179 150 43 chr4 27865049 27865218 -174463129 - MER45B DNA AcHobo -226 814 664 2111 113 0 0 chr4 27865218 27865511 -174462836 - AluSx SINE Alu -19 293 1 1612 179 150 43 chr4 27865511 27865755 -174462592 - MER45B DNA AcHobo -376 664 357 1909 93 7 18 chr4 27865797 27866077 -174462270 + AluSq SINE Alu 1 277 -36 231 311 264 5 chr4 27866196 27866389 -174461958 + MIR SINE MIR 8 250 -12 2230 101 0 0 chr4 27866725 27867023 -174461324 - AluSx SINE Alu -14 298 1 1825 155 23 0 chr4 27867417 27867721 -174460626 + AluSx SINE Alu 1 311 -1 812 203 7 0 chr4 27867833 27867986 -174460361 - FRAM SINE Alu -12 154 1 180 330 88 22 chr4 27867992 27868083 -174460264 - MIR SINE MIR -49 213 117 1951 123 0 0 chr4 27868299 27868617 -174459730 + AluSx SINE Alu 1 312 0 2106 124 0 0 chr4 27868854 27869161 -174459186 + AluSx SINE Alu 1 307 -5 1065 186 132 8 chr4 27869890 27870010 -174458337 + AluJb SINE Alu 1 105 -207 279 0 0 0 chr4 27870010 27870041 -174458306 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1065 186 132 8 chr4 27870041 27870162 -174458185 + AluJb SINE Alu 105 272 -40 1522 166 22 50 chr4 27870162 27870268 -174458079 + AluJo SINE Alu 1 108 -204 2262 81 0 16 chr4 27870268 27870578 -174457769 - AluSq SINE Alu -8 305 1 1522 166 22 50 chr4 27870578 27870791 -174457556 + AluJo SINE Alu 108 311 -1 2053 142 0 0 chr4 27871005 27871316 -174457031 - AluSx SINE Alu -1 311 1 1863 117 7 10 chr4 27871317 27871633 -174456714 - AluSx SINE Alu 0 312 1 2055 116 0 7 chr4 27871909 27872211 -174456136 + AluSx SINE Alu 2 301 -11 310 268 42 0 chr4 27872444 27872515 -174455832 + MER5A DNA MER1_type 3 76 -113 1727 158 10 7 chr4 27872515 27872807 -174455540 + AluSx SINE Alu 1 293 -19 276 201 151 7 chr4 27872902 27873041 -174455306 - AluSc SINE Alu -20 279 121 380 153 111 0 chr4 27873197 27873269 -174455078 - AluSp/q SINE Alu -46 257 178 821 118 0 0 chr4 27873273 27873392 -174454955 - AluJb SINE Alu -193 119 1 3784 142 10 10 chr4 27873809 27874427 -174453920 - L1PA15 LINE L1 -125 6040 5423 1545 170 7 20 chr4 27875593 27875899 -174452448 + AluSx SINE Alu 1 302 -10 188 182 68 23 chr4 27876236 27876280 -174452067 - MER5B DNA MER1_type -108 70 25 1239 99 0 0 chr4 27876480 27876641 -174451706 - AluSq SINE Alu -130 183 23 1276 204 38 14 chr4 27876658 27876947 -174451400 - AluJo SINE Alu -11 301 6 719 140 28 84 chr4 27877068 27877247 -174451100 - AluSg/x SINE Alu -25 284 116 293 225 6 129 chr4 27877258 27877436 -174450911 - AluSg/x SINE Alu -13 287 132 1844 127 4 4 chr4 27879190 27879465 -174448882 + AluSx SINE Alu 1 275 -37 180 0 0 0 chr4 27879472 27879492 -174448855 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 355 200 89 0 chr4 27879492 27879582 -174448765 + L1M4 LINE L1 4989 5086 -1060 831 169 69 12 chr4 27879583 27879743 -174448604 - FRAM SINE Alu -8 168 1 559 178 9 0 chr4 27879743 27879850 -174448497 + L1M4 LINE L1 5080 5187 -959 449 156 220 0 chr4 27879884 27879993 -174448354 - MER51C LTR ERV1 0 640 508 1268 120 0 5 chr4 27879997 27880181 -174448166 - AluSg/x SINE Alu -25 287 105 2173 107 0 0 chr4 27880658 27880956 -174447391 - AluSx SINE Alu -14 298 1 1803 123 32 32 chr4 27881251 27881565 -174446782 - AluSx SINE Alu 0 314 1 487 180 11 0 chr4 27881900 27881989 -174446358 - AluS SINE Alu -218 94 5 2152 88 10 3 chr4 27882047 27882341 -174446006 + AluSx SINE Alu 1 296 -16 281 266 35 71 chr4 27882341 27882510 -174445837 - HAL1 LINE L1 -42 2465 2303 324 194 16 31 chr4 27882745 27882874 -174445473 + CT-rich Low_complexity Low_complexity 4 130 0 315 209 196 88 chr4 27882880 27883028 -174445319 - HAL1 LINE L1 -817 1690 1527 371 221 108 49 chr4 27883062 27883280 -174445067 + MLT1H LTR MaLR 301 549 0 1588 155 0 82 chr4 27883465 27883596 -174444751 + AluJo SINE Alu 1 141 -171 1516 140 41 62 chr4 27883596 27883888 -174444459 + AluSx SINE Alu 1 286 -26 1588 155 0 82 chr4 27883888 27884075 -174444272 + AluJo SINE Alu 141 294 -18 2009 134 3 0 chr4 27884075 27884373 -174443974 - AluSq SINE Alu -12 301 3 24 0 0 0 chr4 27885373 27885397 -174442950 + AT_rich Low_complexity Low_complexity 1 24 0 306 303 36 72 chr4 27885885 27886080 -174442267 + L1ME LINE L1 4281 4468 -1678 1212 95 0 0 chr4 27886092 27886250 -174442097 + AluSg SINE Alu 1 158 -152 1357 173 0 0 chr4 27886258 27886506 -174441841 + AluJb SINE Alu 57 304 0 227 288 0 0 chr4 27886506 27886572 -174441775 + L1ME LINE L1 4989 5054 -1092 1904 100 50 11 chr4 27886576 27886856 -174441491 + AluSq SINE Alu 1 291 -22 30 0 0 0 chr4 27886856 27886886 -174441461 + AT_rich Low_complexity Low_complexity 1 30 0 261 318 68 9 chr4 27887066 27887286 -174441061 + L1ME LINE L1 5259 5491 -671 1981 130 13 0 chr4 27887287 27887587 -174440760 + AluSq SINE Alu 1 304 -9 2028 136 3 3 chr4 27887603 27887912 -174440435 + AluSx SINE Alu 1 309 -3 305 252 117 108 chr4 27887927 27888238 -174440109 + L1ME LINE L1 5504 5820 -350 2239 101 3 0 chr4 27888238 27888536 -174439811 - AluSx SINE Alu -13 299 1 305 252 117 108 chr4 27888536 27888565 -174439782 + L1ME LINE L1 5820 5847 -323 811 114 0 79 chr4 27888588 27888712 -174439635 + FLAM_C SINE Alu 1 114 -198 183 42 0 0 chr4 27888712 27888736 -174439611 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 811 114 0 79 chr4 27888736 27888751 -174439596 + FLAM_C SINE Alu 114 129 -183 297 0 0 0 chr4 27888894 27888927 -174439420 + (CA)n Simple_repeat Simple_repeat 2 34 0 1985 82 11 11 chr4 27888957 27889239 -174439108 - AluSc SINE Alu -3 306 25 1121 162 25 0 chr4 27889343 27889465 -174438882 + MER2 DNA MER2_type 136 266 -79 1857 154 3 0 chr4 27889465 27889763 -174438584 - AluSx SINE Alu -13 299 1 1121 162 25 0 chr4 27889763 27889838 -174438509 + MER2 DNA MER2_type 266 338 -7 907 148 29 135 chr4 27890431 27890498 -174437849 + MER20 DNA MER1_type 2 75 -144 1980 114 3 19 chr4 27890498 27890813 -174437534 + AluSg SINE Alu 1 310 0 907 148 29 135 chr4 27890813 27890989 -174437358 + MER20 DNA MER1_type 75 219 0 2153 85 10 10 chr4 27890999 27891305 -174437042 + AluSc SINE Alu 1 306 -3 297 0 0 0 chr4 27891335 27891368 -174436979 + (TG)n Simple_repeat Simple_repeat 2 34 0 183 42 0 0 chr4 27891526 27891550 -174436797 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 841 108 0 8 chr4 27891550 27891670 -174436677 - AluSg SINE Alu -191 119 1 306 303 36 72 chr4 27891682 27891877 -174436470 - L1 LINE L1 -1678 4468 4281 758 271 104 0 chr4 27892134 27892355 -174435992 - Charlie8 DNA MER1_type -2141 276 33 1978 130 3 24 chr4 27892454 27892807 -174435540 - MER4A LTR ERV1 0 664 261 664 111 0 10 chr4 27892807 27892906 -174435441 - MER4A LTR ERV1 -566 98 1 1740 164 31 68 chr4 27893278 27893423 -174434924 + MLT1B LTR MaLR 1 150 -240 2123 97 0 17 chr4 27893423 27893722 -174434625 - AluSx SINE Alu -12 300 7 1740 164 31 68 chr4 27893722 27894080 -174434267 + MLT1B LTR MaLR 150 390 0 1942 150 0 0 chr4 27894187 27894487 -174433860 + AluSx SINE Alu 1 300 -12 297 242 153 33 chr4 27894487 27894632 -174433715 - LTR16A LTR ERVL -97 360 182 705 137 43 81 chr4 27894670 27894831 -174433516 + MER20B DNA MER1_type 65 219 0 340 333 45 6 chr4 27894831 27895008 -174433339 - LTR16A1 LTR ERVL -255 202 19 1188 139 26 5 chr4 27895079 27895273 -174433074 + MSTA LTR MaLR 1 198 -230 27 0 0 0 chr4 27895273 27895300 -174433047 + AT_rich Low_complexity Low_complexity 1 27 0 1624 134 38 4 chr4 27895310 27895572 -174432775 + AluSx SINE Alu 1 271 -41 203 193 18 0 chr4 27895575 27895632 -174432715 + (TA)n Simple_repeat Simple_repeat 1 58 0 1552 148 12 8 chr4 27895655 27895899 -174432448 + MSTA LTR MaLR 184 428 0 642 259 45 25 chr4 27895899 27896100 -174432247 - MIR SINE MIR -38 224 20 243 0 0 0 chr4 27896602 27896629 -174431718 + (CA)n Simple_repeat Simple_repeat 2 28 0 286 235 111 12 chr4 27898195 27898276 -174430071 + MIR3 SINE MIR 111 199 -9 1283 200 97 29 chr4 27898792 27898975 -174429372 + MER58B DNA MER1_type 11 225 -2195 2267 93 0 3 chr4 27898975 27899288 -174429059 + AluSx SINE Alu 1 312 0 1283 200 97 29 chr4 27899288 27899414 -174428933 + MER58B DNA MER1_type 225 341 0 231 176 33 0 chr4 27900649 27900740 -174427607 + (TA)n Simple_repeat Simple_repeat 2 95 0 2175 91 3 0 chr4 27900852 27901139 -174427208 + AluSp SINE Alu 1 288 -25 189 0 0 0 chr4 27901145 27901166 -174427181 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 265 225 0 36 chr4 27901420 27901555 -174426792 + AluJ/monomer SINE Alu 244 297 -5 2020 108 0 0 chr4 27901584 27901870 -174426477 + AluSx SINE Alu 19 304 -8 1902 131 28 0 chr4 27902054 27902344 -174426003 - AluSq SINE Alu -15 298 1 686 272 34 15 chr4 27902354 27902560 -174425787 - MIR SINE MIR -45 217 8 1965 128 7 0 chr4 27903133 27903452 -174424895 + AluSx SINE Alu 1 321 0 2109 104 3 0 chr4 27903452 27903739 -174424608 + AluSp SINE Alu 1 288 -25 189 0 0 0 chr4 27903745 27903766 -174424581 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 1007 157 0 0 chr4 27903783 27903942 -174424405 - AluSg/x SINE Alu -15 295 137 494 279 109 12 chr4 27904066 27904231 -174424116 + MER5A DNA MER1_type 9 189 0 809 201 38 0 chr4 27904235 27904444 -174423903 + MER20B DNA MER1_type 567 783 0 1459 192 51 10 chr4 27904508 27904683 -174423664 - AluJo SINE Alu -8 304 111 315 0 0 0 chr4 27904683 27904718 -174423629 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 1459 192 51 10 chr4 27904718 27904834 -174423513 - AluJo SINE Alu -201 111 1 427 219 19 48 chr4 27904855 27904960 -174423387 + MIR3 SINE MIR 92 193 -15 551 282 75 55 chr4 27905860 27906115 -174422232 - MIR SINE MIR -1 261 2 2293 99 0 0 chr4 27906417 27906729 -174421618 + AluSx SINE Alu 1 312 0 207 0 0 0 chr4 27906889 27906912 -174421435 + (A)n Simple_repeat Simple_repeat 1 23 0 21 0 0 0 chr4 27906919 27906940 -174421407 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 27907498 27907519 -174420828 + AT_rich Low_complexity Low_complexity 1 21 0 1949 149 0 0 chr4 27907621 27907917 -174420430 + AluSx SINE Alu 2 297 -15 829 158 0 0 chr4 27908112 27908245 -174420102 - AluSq/x SINE Alu -179 133 1 4686 114 48 7 chr4 27909349 27910074 -174418273 - L1PA13 LINE L1 -1 6162 5408 955 219 26 17 chr4 27910224 27910457 -174417890 - MIR SINE MIR -18 244 10 1794 123 0 0 chr4 27910636 27910887 -174417460 - AluSq SINE Alu -62 251 1 254 251 34 86 chr4 27911011 27911344 -174417003 + L1M2 LINE L1 5265 5586 -656 2125 131 16 7 chr4 27911374 27911680 -174416667 - AluSx SINE Alu -3 309 1 224 333 45 38 chr4 27911826 27911958 -174416389 + L2 LINE L2 3140 3272 0 350 216 11 23 chr4 27912499 27912587 -174415760 + FLAM SINE Alu 47 133 0 780 200 7 0 chr4 27912624 27912774 -174415573 - MLT1B LTR MaLR -213 177 27 697 225 77 28 chr4 27912832 27913038 -174415309 - MLT1G3 LTR MaLR -107 435 180 368 224 0 0 chr4 27913046 27913113 -174415234 - MLT1G3 LTR MaLR -500 67 1 2059 88 78 0 chr4 27913225 27913509 -174414838 - AluSg SINE Alu -4 306 1 701 153 221 0 chr4 27914203 27914274 -174414073 + MER96 DNA MER1_type? 13 67 -108 1115 219 132 47 chr4 27914274 27914639 -174413708 - MSTD LTR MaLR 0 396 1 701 153 221 0 chr4 27914639 27914698 -174413649 + MER96 DNA MER1_type? 67 172 -3 1682 132 0 0 chr4 27914822 27915057 -174413290 - AluSx SINE Alu -15 297 63 464 225 58 0 chr4 27916114 27916234 -174412113 + MIR SINE MIR 37 163 -99 2132 122 3 0 chr4 27916535 27916853 -174411494 + AluSq SINE Alu 1 319 0 251 277 36 0 chr4 27916854 27916937 -174411410 - MIR SINE MIR -48 214 129 2017 121 18 0 chr4 27917057 27917337 -174411010 + AluSx SINE Alu 1 285 -27 654 105 11 0 chr4 27917366 27917461 -174410886 - L1MB5 LINE L1 -15 6159 6064 1000 185 12 0 chr4 27917462 27917635 -174410712 - AluJb SINE Alu -4 308 134 2437 92 0 0 chr4 27917635 27917939 -174410408 - AluSg SINE Alu -6 304 1 1042 190 5 24 chr4 27917939 27918150 -174410197 - L1MB5 LINE L1 -104 6070 5864 1084 139 6 0 chr4 27918157 27918323 -174410024 - AluSg/x SINE Alu -12 300 134 201 256 26 39 chr4 27918370 27918448 -174409899 - MIR SINE MIR -57 205 129 528 127 59 51 chr4 27918478 27918596 -174409751 - L1M LINE L1 -811 5373 5255 2613 164 34 69 chr4 27918656 27918936 -174409411 - L1MB5 LINE L1 -294 5880 5592 2225 108 0 40 chr4 27918936 27919260 -174409087 + AluSx SINE Alu 1 311 -1 2613 164 34 69 chr4 27919260 27919721 -174408626 - L1MB5 LINE L1 -582 5592 5179 2117 145 0 0 chr4 27919721 27920024 -174408323 - AluSx SINE Alu -9 303 1 1775 173 3 28 chr4 27920025 27920343 -174408004 - AluJo SINE Alu -1 311 2 457 238 0 0 chr4 27920345 27920446 -174407901 - AluJo/FLAM SINE Alu -181 131 31 2992 162 26 95 chr4 27920466 27921003 -174407344 + MER51C LTR ERV1 1 573 -67 2306 113 0 3 chr4 27921003 27921312 -174407035 - AluSg SINE Alu -2 308 1 2992 162 26 95 chr4 27921312 27921347 -174407000 + MER51C LTR ERV1 573 522 -118 2102 122 0 7 chr4 27921347 27921635 -174406712 + AluSx SINE Alu 2 287 -25 2992 162 26 95 chr4 27921635 27921748 -174406599 + MER51C LTR ERV1 521 640 0 563 178 9 0 chr4 27921782 27921889 -174406458 - L1MB5 LINE L1 -959 5187 5080 824 161 71 13 chr4 27921889 27922044 -174406303 + FRAM SINE Alu 1 163 -13 781 199 37 65 chr4 27922045 27922140 -174406207 - L1MB5 LINE L1 -1055 5091 4995 180 0 0 0 chr4 27922140 27922160 -174406187 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 2244 79 0 18 chr4 27922167 27922447 -174405900 - AluSx SINE Alu -37 275 1 781 199 37 65 chr4 27922447 27922559 -174405788 - L1MB5 LINE L1 -1157 4989 4882 22 0 0 0 chr4 27922797 27922819 -174405528 + AT_rich Low_complexity Low_complexity 1 22 0 1919 145 35 0 chr4 27922973 27923263 -174405084 - AluSx SINE Alu -10 302 3 195 276 40 0 chr4 27923265 27923341 -174405006 + MIR SINE MIR 161 239 -23 251 27 0 27 chr4 27923359 27923396 -174404951 + (ATG)n Simple_repeat Simple_repeat 2 37 0 2185 114 3 3 chr4 27923496 27923803 -174404544 - AluSx SINE Alu -5 307 1 250 323 38 19 chr4 27924235 27924393 -174403954 + L1ME LINE L1 4795 4955 -1191 1994 131 3 3 chr4 27924394 27924790 -174403557 - AluSx SINE Alu 0 396 1 665 168 0 0 chr4 27925129 27925236 -174403111 + FLAM_C SINE Alu 2 108 -35 25 0 0 0 chr4 27925244 27925269 -174403078 + AT_rich Low_complexity Low_complexity 1 25 0 1593 219 74 39 chr4 27925269 27925785 -174402562 + L1MC4a LINE L1 5409 5942 -1866 893 278 127 9 chr4 27925951 27926559 -174401788 + L1ME LINE L1 5128 5814 -348 2048 159 0 0 chr4 27926763 27927072 -174401275 + AluSx SINE Alu 1 309 -3 329 58 19 0 chr4 27927072 27927124 -174401223 + L1MA3 LINE L1 6253 6305 0 2256 102 0 0 chr4 27927303 27927596 -174400751 + AluSx SINE Alu 2 294 -18 529 228 117 33 chr4 27927645 27927825 -174400522 + MIR SINE MIR 45 239 -23 2141 110 3 0 chr4 27928813 27929095 -174399252 + AluSp SINE Alu 1 283 -30 225 0 0 0 chr4 27929099 27929124 -174399223 + (GAAAA)n Simple_repeat Simple_repeat 2 26 0 276 261 34 11 chr4 27931701 27931789 -174396558 + MLT1I LTR MaLR 57 146 -263 831 262 118 42 chr4 27931851 27932351 -174395996 - MER34 LTR ERV1 -4 538 1 4035 159 30 13 chr4 27932415 27932543 -174395804 - LTR62 LTR ERVK -2 717 593 917 137 0 0 chr4 27932543 27932674 -174395673 - FLAM_C SINE Alu -1 132 2 4035 159 30 13 chr4 27932674 27933250 -174395097 - LTR62 LTR ERVK -126 593 1 2014 140 0 31 chr4 27934055 27934377 -174393970 + AluJb SINE Alu 1 312 0 2375 85 13 0 chr4 27934378 27934730 -174393617 + AluY SINE Alu 1 356 0 3709 137 9 67 chr4 27935056 27935236 -174393111 - MER41B LTR ERV1 0 635 446 2145 115 7 0 chr4 27935236 27935531 -174392816 - AluSx SINE Alu -15 297 1 3709 137 9 67 chr4 27935531 27936022 -174392325 - MER41B LTR ERV1 -189 446 3 21 0 0 0 chr4 27936144 27936165 -174392182 + AT_rich Low_complexity Low_complexity 1 21 0 2458 87 0 10 chr4 27936165 27936475 -174391872 + AluSg SINE Alu 1 307 -3 1211 158 30 107 chr4 27936723 27936962 -174391385 - MLT1B LTR MaLR -2 388 181 2319 88 0 13 chr4 27936962 27937269 -174391078 - AluSc SINE Alu -6 303 1 1211 158 30 107 chr4 27937269 27937365 -174390982 - MLT1B LTR MaLR -209 181 79 238 280 53 15 chr4 27938363 27938495 -174389852 + L2 LINE L2 2885 3021 -251 1193 122 269 12 chr4 27938562 27938807 -174389540 + AluSg1 SINE Alu 1 308 -1 1733 221 89 63 chr4 27938807 27939349 -174388998 + MER49 LTR ERV1 19 756 -167 2225 119 0 0 chr4 27939349 27939652 -174388695 + AluSx SINE Alu 1 303 -9 1733 221 89 63 chr4 27939652 27939825 -174388522 + MER49 LTR ERV1 756 923 0 303 93 0 0 chr4 27939828 27939871 -174388476 + (TTC)n Simple_repeat Simple_repeat 3 45 0 1764 78 149 30 chr4 27939873 27940141 -174388206 - AluSq SINE Alu -13 300 1 2220 107 0 7 chr4 27940664 27940963 -174387384 + AluSx SINE Alu 1 297 -15 1524 234 47 38 chr4 27941256 27941708 -174386639 - L1ME2 LINE L1 -9 6155 5700 1870 154 0 4 chr4 27941708 27941988 -174386359 + AluSx SINE Alu 1 279 -33 198 191 0 0 chr4 27941988 27942030 -174386317 + GA-rich Low_complexity Low_complexity 1 42 0 387 208 104 0 chr4 27942037 27942133 -174386214 - L1ME2 LINE L1 -459 5707 5602 594 204 49 21 chr4 27942133 27942275 -174386072 + MER53 DNA DNA 4 149 -40 1232 185 56 79 chr4 27942301 27942657 -174385690 - L1ME2 LINE L1 -553 5613 5266 1940 125 0 28 chr4 27942675 27942962 -174385385 - AluSx SINE Alu -32 280 2 4160 223 108 88 chr4 27942962 27943441 -174384906 - L1ME2 LINE L1 -1427 4719 4251 2112 89 31 14 chr4 27943441 27943732 -174384615 - AluSg SINE Alu -14 296 1 4160 223 108 88 chr4 27943732 27943928 -174384419 - L1ME2 LINE L1 -1895 4251 4060 2185 98 19 26 chr4 27943928 27944108 -174384239 - AluSx SINE Alu -7 305 126 181 0 69 0 chr4 27944108 27944137 -174384210 + (TTTG)n Simple_repeat Simple_repeat 4 34 0 2185 98 19 26 chr4 27944137 27944263 -174384084 - AluSx SINE Alu -186 126 1 4160 223 108 88 chr4 27944263 27944484 -174383863 - L1ME2 LINE L1 -2086 4060 3845 2065 136 7 0 chr4 27944484 27944786 -174383561 - AluSx SINE Alu -8 304 1 4160 223 108 88 chr4 27944786 27945123 -174383224 - L1ME2 LINE L1 -2301 3845 3516 781 199 0 0 chr4 27945123 27945254 -174383093 - FLAM_C SINE Alu -4 139 9 4160 223 108 88 chr4 27945254 27945741 -174382606 - L1ME2 LINE L1 -2630 3516 3040 2553 66 0 0 chr4 27945741 27946046 -174382301 - AluY SINE Alu -6 305 1 4160 223 108 88 chr4 27946046 27946131 -174382216 - L1ME2 LINE L1 -3106 3040 2958 237 33 0 0 chr4 27946131 27946161 -174382186 + (TG)n Simple_repeat Simple_repeat 1 30 0 2205 96 0 0 chr4 27946161 27946441 -174381906 - AluSq SINE Alu -33 280 1 4160 223 108 88 chr4 27946441 27946862 -174381485 - L1ME2 LINE L1 -3187 2959 2310 2351 107 7 0 chr4 27946892 27947200 -174381147 - AluSg SINE Alu 0 310 1 1387 213 14 60 chr4 27947202 27947554 -174380793 - MLT1A2 LTR MaLR -38 336 1 1501 144 45 0 chr4 27947560 27947803 -174380544 + MER2 DNA MER2_type 1 254 -91 1978 158 3 0 chr4 27947808 27948106 -174380241 - AluSx SINE Alu -13 299 1 1889 134 7 0 chr4 27948273 27948576 -174379771 + AluSx SINE Alu 14 312 0 2145 126 0 7 chr4 27949247 27949548 -174378799 - AluSx SINE Alu -13 299 1 1495 175 175 20 chr4 27949652 27949963 -174378384 + MER93a LTR ERV1 1 373 -29 3247 140 8 14 chr4 27949963 27950385 -174377962 - MER75 DNA T2_type -2 512 92 2220 119 0 3 chr4 27950385 27950688 -174377659 + AluSg1 SINE Alu 3 304 -5 3247 140 8 14 chr4 27950688 27950780 -174377567 - MER75 DNA T2_type -422 92 1 1495 175 175 20 chr4 27950780 27950816 -174377531 + MER93a LTR ERV1 373 402 0 2312 121 54 56 chr4 27951064 27951163 -174377184 + MSTC LTR MaLR 1 99 -329 1751 157 4 4 chr4 27951163 27951452 -174376895 + AluSg SINE Alu 14 302 0 2312 121 54 56 chr4 27951452 27951780 -174376567 + MSTC LTR MaLR 99 428 0 2204 109 0 0 chr4 27951930 27952242 -174376105 + AluSx SINE Alu 1 312 0 615 139 15 17 chr4 27952297 27952443 -174375904 - Charlie5 DNA MER1_type -180 2432 2330 289 203 17 0 chr4 27952476 27952535 -174375812 + MLT1H1 LTR MaLR 6 65 -490 1563 163 54 7 chr4 27952543 27952819 -174375528 - AluSx SINE Alu -21 291 3 884 227 0 32 chr4 27952835 27953020 -174375327 + AluJb SINE Alu 123 301 -11 581 200 9 0 chr4 27953033 27953148 -174375199 + Charlie5 DNA MER1_type 1 116 -2496 1875 143 35 7 chr4 27953150 27953436 -174374911 - AluSx SINE Alu -18 294 1 1465 143 15 61 chr4 27953486 27953745 -174374602 + Charlie5 DNA MER1_type 2290 2560 -64 1894 129 54 0 chr4 27953745 27954023 -174374324 - AluSx SINE Alu -19 293 1 5302 140 137 42 chr4 27954024 27955153 -174373194 - MER11B LTR ERVK 0 1236 1 1465 143 15 61 chr4 27955153 27955233 -174373114 + Charlie5 DNA MER1_type 2559 2615 -9 2364 97 6 3 chr4 27955330 27955641 -174372706 + AluSq SINE Alu 2 313 0 625 129 10 10 chr4 27955674 27955775 -174372572 + Tigger2a DNA MER2_type 1 101 -333 1326 191 5 5 chr4 27955777 27955997 -174372350 + AluJo SINE Alu 1 220 -92 309 163 0 0 chr4 27955997 27956046 -174372301 + AluJo SINE Alu 86 134 -168 461 280 29 63 chr4 27956162 27956401 -174371946 - MIR SINE MIR 0 262 32 2020 112 4 0 chr4 27956457 27956726 -174371621 + AluSq SINE Alu 1 270 -43 1677 120 0 8 chr4 27956735 27956969 -174371378 + AluJb SINE Alu 1 232 -80 1309 105 0 0 chr4 27956969 27957140 -174371207 + AluSq SINE Alu 131 301 -12 762 136 16 0 chr4 27957140 27957265 -174371082 + L1MC1 LINE L1 6064 6190 -143 1812 155 10 13 chr4 27957767 27958071 -174370276 + AluJo SINE Alu 1 303 -9 2313 91 7 3 chr4 27958087 27958385 -174369962 + AluSx SINE Alu 1 299 -13 202 338 98 8 chr4 27958448 27958581 -174369766 - L2 LINE L2 0 3313 3169 386 281 41 0 chr4 27958652 27958773 -174369574 + MIR SINE MIR 67 192 -70 370 132 0 85 chr4 27959285 27959390 -174368957 + AluS SINE Alu 3 74 -229 2256 118 0 10 chr4 27959888 27960194 -174368153 - AluSx SINE Alu -9 303 1 492 265 26 58 chr4 27960362 27960470 -174367877 + MIR SINE MIR 78 179 -83 3559 118 8 4 chr4 27960470 27960979 -174367368 - MER9 LTR ERVK 0 511 1 492 265 26 58 chr4 27960979 27961059 -174367288 + MIR SINE MIR 179 260 -2 21 0 0 0 chr4 27961106 27961127 -174367220 + AT_rich Low_complexity Low_complexity 1 21 0 1548 183 14 28 chr4 27961129 27961439 -174366908 + AluJo SINE Alu 2 307 0 697 197 8 15 chr4 27961476 27961608 -174366739 + AluJb SINE Alu 7 137 -175 851 247 50 44 chr4 27961608 27961983 -174366364 - MLT1G3 LTR MaLR -47 548 83 2647 68 31 6 chr4 27961983 27962336 -174366011 + MER4E LTR ERV1 1 362 -404 300 25 0 50 chr4 27962363 27962403 -174365944 - MER4E LTR ERV1 -380 386 349 2060 91 0 0 chr4 27962405 27962657 -174365690 + AluSg SINE Alu 2 253 -57 1427 98 0 0 chr4 27962658 27962832 -174365515 - AluSc SINE Alu -133 176 3 3403 55 2 5 chr4 27962833 27963255 -174365092 + MER4E LTR ERV1 346 766 0 2065 134 3 13 chr4 27963256 27963561 -174364786 - AluSx SINE Alu -6 306 5 393 281 36 7 chr4 27963561 27963693 -174364654 - MLT1F1 LTR MaLR -425 142 4 530 240 39 144 chr4 27963696 27963981 -174364366 - MLT1F1-int LTR MaLR 0 1371 1135 2211 109 0 3 chr4 27963981 27964275 -174364072 - AluSg SINE Alu -17 293 1 530 240 39 144 chr4 27964275 27964372 -174363975 - MLT1F1-int LTR MaLR -236 1135 1029 2080 120 33 0 chr4 27964480 27964781 -174363566 - AluSx SINE Alu -1 311 1 725 251 0 0 chr4 27964820 27964983 -174363364 + FRAM SINE Alu 8 170 -6 2010 150 3 3 chr4 27965042 27965348 -174362999 - AluSx SINE Alu -6 306 1 594 158 0 0 chr4 27965362 27965457 -174362890 + FLAM_C SINE Alu 47 141 -2 356 220 68 49 chr4 27965477 27965617 -174362730 - MLT1B LTR MaLR -211 179 51 2343 78 10 0 chr4 27965917 27966210 -174362137 + AluSc SINE Alu 1 296 -13 21 36 0 0 chr4 27966389 27966417 -174361930 + AT_rich Low_complexity Low_complexity 1 28 0 504 253 38 38 chr4 27966540 27966726 -174361621 - MIR SINE MIR -32 230 45 23 0 0 0 chr4 27966752 27966775 -174361572 + AT_rich Low_complexity Low_complexity 1 23 0 1878 148 36 0 chr4 27966784 27967062 -174361285 + AluJb SINE Alu 1 288 -24 435 273 0 0 chr4 27967223 27967322 -174361025 + L1MD3 LINE L1 7085 7183 -812 * 2227 184 19 9 chr4 27967318 27967748 -174360599 + L1MD3 LINE L1 7553 7986 -9 2105 124 3 0 chr4 27968222 27968512 -174359835 - AluJb SINE Alu -21 291 1 2068 122 16 13 chr4 27968851 27969155 -174359192 - AluJb SINE Alu -5 307 3 2117 133 0 3 chr4 27969375 27969675 -174358672 + AluSx SINE Alu 1 299 -13 1384 242 109 40 chr4 27969682 27970145 -174358202 - LTR33A LTR ERVL 0 523 45 1990 120 37 7 chr4 27970228 27970528 -174357819 + AluSx SINE Alu 1 309 -3 23 33 0 0 chr4 27971176 27971206 -174357141 + AT_rich Low_complexity Low_complexity 1 30 0 871 266 104 74 chr4 27971489 27972251 -174356096 + L1ME4a LINE L1 5314 6081 -40 1843 141 7 14 chr4 27973062 27973359 -174354988 + AluSx SINE Alu 1 295 -17 2475 103 0 0 chr4 27973676 27973987 -174354360 + AluSx SINE Alu 1 311 -1 454 327 46 0 chr4 27975556 27975773 -174352574 + L1ME3 LINE L1 5493 5719 -451 360 163 57 8 chr4 27975778 27975901 -174352446 + GA-rich Low_complexity Low_complexity 3 131 0 329 263 92 106 chr4 27975903 27976008 -174352339 + L1ME3 LINE L1 5738 5843 -319 2318 111 3 0 chr4 27976008 27976314 -174352033 - AluSx SINE Alu -4 308 2 329 263 92 106 chr4 27976314 27976425 -174351922 + L1ME3 LINE L1 5843 5951 -211 306 50 0 0 chr4 27977629 27977669 -174350678 + (CCAA)n Simple_repeat Simple_repeat 4 43 0 1968 104 59 0 chr4 27977799 27978069 -174350278 + AluSx SINE Alu 3 288 -24 1820 252 21 79 chr4 27979971 27980924 -174347423 + L1MEc LINE L1 2048 2921 -3294 2261 219 77 58 chr4 27981058 27981090 -174347257 + HAL1 LINE L1 1597 1627 -880 946 218 69 5 chr4 27981090 27981292 -174347055 - MER58C DNA MER1_type 0 215 1 2261 219 77 58 chr4 27981292 27982075 -174346272 + HAL1 LINE L1 1627 2428 -79 31 26 0 0 chr4 27982116 27982154 -174346193 + AT_rich Low_complexity Low_complexity 1 38 0 254 224 35 0 chr4 27982154 27982212 -174346135 + HAL1 LINE L1 2447 2506 -1 694 285 5 5 chr4 27983028 27983235 -174345112 + MIR SINE MIR 18 224 -38 1223 260 121 19 chr4 27983269 27983923 -174344424 + L2 LINE L2 2371 3092 -221 268 144 53 8 chr4 27983925 27984057 -174344290 + (TA)n Simple_repeat Simple_repeat 1 138 0 1902 137 0 62 chr4 27984057 27984363 -174343984 - AluSx SINE Alu -25 287 1 570 279 66 20 chr4 27984364 27984561 -174343786 + L2 LINE L2 3101 3306 -7 1467 134 0 0 chr4 27984574 27984775 -174343572 + AluSx SINE Alu 1 201 -111 406 275 45 45 chr4 27984849 27985027 -174343320 + MIR SINE MIR 71 248 -14 272 351 11 0 chr4 27986780 27986874 -174341473 + (TG)n Simple_repeat Simple_repeat 1 95 0 251 315 45 0 chr4 27988555 27988644 -174339703 - MIR SINE MIR -156 106 14 239 293 49 41 chr4 27988990 27989113 -174339234 - MIR3 SINE MIR -7 201 78 221 271 0 0 chr4 27989265 27989313 -174339034 + L2 LINE L2 3266 3313 0 199 266 70 47 chr4 27989840 27989968 -174338379 + L2 LINE L2 3137 3267 -5 657 215 20 62 chr4 27990313 27990508 -174337839 + MIR SINE MIR 22 208 -54 2307 96 3 0 chr4 27990545 27990838 -174337509 - AluSx SINE Alu -18 294 1 468 0 0 0 chr4 27991787 27991839 -174336508 + (TG)n Simple_repeat Simple_repeat 2 53 0 236 270 0 16 chr4 27992368 27992431 -174335916 + CT-rich Low_complexity Low_complexity 1 62 0 1842 149 20 17 chr4 27992521 27992822 -174335525 + AluJo SINE Alu 1 302 -10 662 283 157 25 chr4 27993355 27993641 -174334706 + MLT1I LTR MaLR 84 407 -2 1109 113 0 4 chr4 27993796 27994056 -174334291 + (GGAA)n Simple_repeat Simple_repeat 1 258 0 1069 306 51 42 chr4 27994141 27994693 -174333654 + MARNA DNA Mariner 10 566 -20 1801 126 8 0 chr4 27994881 27995144 -174333203 + AluSx SINE Alu 33 297 -15 239 247 65 0 chr4 27995433 27995510 -174332837 - MIR SINE MIR -72 190 109 291 329 71 0 chr4 27995920 27996060 -174332287 - MIR SINE MIR -95 167 18 226 151 57 0 chr4 27996062 27996115 -174332232 + T-rich Low_complexity Low_complexity 4 59 0 640 305 44 0 chr4 27996222 27996425 -174331922 - MIR SINE MIR -31 231 20 1663 109 0 13 chr4 27996509 27996738 -174331609 - AluJb SINE Alu -22 290 65 276 357 49 0 chr4 27996823 27996966 -174331381 + MIR SINE MIR 18 167 -95 334 213 27 13 chr4 27997008 27997083 -174331264 + MIR SINE MIR 36 111 -151 6412 72 17 43 chr4 27997118 27998427 -174329920 + L1PA10 LINE L1 4868 6154 -14 213 200 0 0 chr4 27998460 27998505 -174329842 + L2 LINE L2 3210 3254 -18 355 265 88 29 chr4 27998731 27998901 -174329446 - MIR SINE MIR -54 208 29 825 137 0 15 chr4 27999533 27999664 -174328683 + FLAM_C SINE Alu 5 133 0 24 0 0 0 chr4 27999682 27999706 -174328641 + AT_rich Low_complexity Low_complexity 1 24 0 1620 110 57 4 chr4 27999741 27999969 -174328378 + AluSq SINE Alu 15 254 -59 211 0 57 29 chr4 27999987 28000022 -174328325 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 180 191 0 44 chr4 28000171 28000239 -174328108 + GA-rich Low_complexity Low_complexity 3 67 0 350 247 27 0 chr4 28000262 28000408 -174327939 + GA-rich Low_complexity Low_complexity 1 150 0 335 262 113 51 chr4 28000952 28001288 -174327059 - L2 LINE L2 -10 3262 2906 277 271 31 0 chr4 28001602 28001698 -174326649 + MER5B DNA MER1_type 61 159 -19 2395 104 0 3 chr4 28001761 28002070 -174326277 + AluSx SINE Alu 1 308 -4 992 192 61 0 chr4 28002093 28002291 -174326056 - MLT1B LTR MaLR -8 382 173 9947 43 3 4 chr4 28002497 28003718 -174324629 + L1P LINE L1 3350 4569 -1577 2011 120 18 4 chr4 28004059 28004381 -174323966 - AluSc SINE Alu 0 326 1 2512 167 25 4 chr4 28005072 28005557 -174322790 - L1P LINE L1 -1596 4550 4056 2232 110 53 11 chr4 28005557 28005898 -174322449 + L1PA13 LINE L1 5790 6159 -4 1566 172 8 0 chr4 28005944 28006206 -174322141 - AluSx SINE Alu -14 298 35 27 81 0 0 chr4 28006429 28006491 -174321856 + GC_rich Low_complexity Low_complexity 1 62 0 21 0 0 0 chr4 28007801 28007822 -174320525 + AT_rich Low_complexity Low_complexity 1 21 0 649 244 91 14 chr4 28008849 28009058 -174319289 - MIR SINE MIR -24 238 14 2311 92 0 13 chr4 28010187 28010520 -174317827 + AluSc SINE Alu 1 309 0 1826 147 7 11 chr4 28010828 28011113 -174317234 - AluSx SINE Alu -28 284 1 802 162 0 22 chr4 28011116 28011252 -174317095 - AluJo/FLAM SINE Alu -169 133 1 256 286 0 0 chr4 28011286 28011342 -174317005 + polypyrimidine Low_complexity Low_complexity 2 57 0 183 129 0 0 chr4 28013405 28013436 -174314911 + (T)n Simple_repeat Simple_repeat 1 31 0 1970 130 27 0 chr4 28014107 28014400 -174313947 + AluSq SINE Alu 1 301 -12 2200 103 3 0 chr4 28014405 28014705 -174313642 + AluSx SINE Alu 6 306 -6 3490 168 19 26 chr4 28014705 28015397 -174312950 + L1MB2 LINE L1 5483 6169 -2 191 244 0 0 chr4 28015964 28016005 -174312342 + L2 LINE L2 3226 3266 -6 508 240 45 26 chr4 28016738 28016892 -174311455 + MIR SINE MIR 29 185 -77 198 71 0 0 chr4 28017819 28017847 -174310500 + (T)n Simple_repeat Simple_repeat 1 28 0 2150 100 0 17 chr4 28018666 28018967 -174309380 - AluSx SINE Alu -16 296 1 251 372 0 0 chr4 28018974 28019052 -174309295 - L2 LINE L2 -1 3312 3235 2044 103 3 3 chr4 28019863 28020154 -174308193 + AluSx SINE Alu 1 291 -21 530 191 9 27 chr4 28020179 28020289 -174308058 + MER58A DNA MER1_type 10 117 0 254 185 0 108 chr4 28020298 28020363 -174307984 + MER58A DNA MER1_type 165 222 -2 1292 166 39 75 chr4 28020374 28020469 -174307878 - MER33 DNA MER1_type -2262 323 226 2352 88 0 0 chr4 28020469 28020776 -174307571 + AluSx SINE Alu 1 307 -5 1292 166 39 75 chr4 28020776 28021011 -174307336 - MER33 DNA MER1_type -2359 226 5 809 234 0 18 chr4 28021174 28021345 -174307002 - FRAM SINE Alu -8 168 1 353 306 81 6 chr4 28022146 28022306 -174306041 + MIR3 SINE MIR 31 202 -6 2287 81 3 0 chr4 28022532 28022830 -174305517 - AluSc SINE Alu -10 299 1 712 155 23 52 chr4 28023098 28023272 -174305075 + L1MB8 LINE L1 6001 6169 -9 2354 93 0 0 chr4 28023288 28023598 -174304749 + AluSx SINE Alu 1 310 -2 1440 284 55 6 chr4 28023652 28024142 -174304205 - L1MC4a LINE L1 -1953 5855 5342 445 337 26 5 chr4 28024324 28024514 -174303833 + L2 LINE L2 2877 3070 -202 2936 168 25 7 chr4 28024722 28025276 -174303071 - L1MB3 LINE L1 0 6183 5620 1765 118 8 0 chr4 28025290 28025544 -174302803 - AluSx SINE Alu -21 291 36 894 200 6 6 chr4 28025646 28025806 -174302541 - MLT1B LTR MaLR -226 164 5 2088 111 0 0 chr4 28027379 28027668 -174300679 + AluSx SINE Alu 2 290 -22 1905 110 0 0 chr4 28028848 28029112 -174299235 - AluY SINE Alu -21 290 27 21 0 0 0 chr4 28029121 28029142 -174299205 + AT_rich Low_complexity Low_complexity 1 21 0 613 239 0 0 chr4 28029395 28029533 -174298814 - MIR3 SINE MIR -15 193 56 2071 201 45 69 chr4 28029762 28030295 -174298052 + MLT2B1 LTR ERVL 1 520 0 722 272 30 25 chr4 28031495 28031697 -174296650 - MIR SINE MIR 0 262 60 260 254 68 0 chr4 28031976 28032035 -174296312 - L2 LINE L2 -1 3271 3209 2398 55 3 0 chr4 28032285 28032593 -174295754 - AluY SINE Alu -1 310 2 353 257 29 14 chr4 28033403 28033543 -174294804 - L1MC/D LINE L1 -1984 5824 5683 23 0 0 0 chr4 28034238 28034261 -174294086 + AT_rich Low_complexity Low_complexity 1 23 0 1015 59 0 15 chr4 28035045 28035181 -174293166 + AluY SINE Alu 1 134 -177 2058 75 0 14 chr4 28035181 28035463 -174292884 + AluY SINE Alu 1 278 -33 2184 161 79 25 chr4 28035835 28036276 -174292071 + MLT1C LTR MaLR 1 465 -2 212 270 110 68 chr4 28036313 28036476 -174291871 + L2 LINE L2 2822 2991 -322 3645 172 62 47 chr4 28036808 28037659 -174290688 + L1MB2 LINE L1 5260 6121 -50 2193 93 0 3 chr4 28037659 28037950 -174290397 + AluSq SINE Alu 7 296 -17 3645 172 62 47 chr4 28037950 28037995 -174290352 + L1MB2 LINE L1 6121 6164 -7 740 163 64 7 chr4 28038360 28038501 -174289846 + MLT1C LTR MaLR 1 149 -318 319 296 23 0 chr4 28039010 28039098 -174289249 + CT-rich Low_complexity Low_complexity 6 95 0 1019 179 29 57 chr4 28039137 28039448 -174288899 + MLT1A1 LTR MaLR 6 365 0 698 252 47 95 chr4 28039520 28039882 -174288465 - L1MC5 LINE L1 -30 7931 7610 1969 125 17 0 chr4 28039882 28040179 -174288168 + AluSx SINE Alu 1 302 -10 698 252 47 95 chr4 28040179 28040450 -174287897 - L1MC5 LINE L1 -351 7610 7328 325 326 68 0 chr4 28040457 28040604 -174287743 - L1MC4 LINE L1 -565 7477 7321 * 438 271 53 0 chr4 28040598 28040731 -174287616 - L1MC4a LINE L1 -632 7176 7037 537 323 67 30 chr4 28040743 28041043 -174287304 + MARNA DNA Mariner 268 578 -8 317 170 0 0 chr4 28041043 28041090 -174287257 - L1MC4 LINE L1 -1338 6704 6658 203 245 0 0 chr4 28041637 28041690 -174286657 - MIR3 SINE MIR -5 203 151 486 245 138 19 chr4 28041707 28041866 -174286481 - MIR3 SINE MIR -25 183 6 438 294 20 33 chr4 28042230 28042383 -174285964 + MIR3 SINE MIR 19 169 -39 432 245 122 27 chr4 28042876 28043143 -174285204 - LTR16C LTR ERVL -3 488 145 696 275 96 95 chr4 28043324 28043980 -174284367 - L2 LINE L2 0 3313 2657 1442 235 138 11 chr4 28043981 28044427 -174283920 - MLT1E3 LTR MaLR 0 608 122 482 277 69 35 chr4 28044507 28044767 -174283580 - L2 LINE L2 -646 2668 2400 411 323 32 8 chr4 28044917 28045041 -174283306 - MIR SINE MIR -116 146 20 2127 97 0 0 chr4 28045058 28045346 -174283001 - AluSx SINE Alu 0 312 25 1564 146 76 7 chr4 28045640 28045915 -174282432 - AluJo SINE Alu -18 294 1 2111 121 88 36 chr4 28046095 28046458 -174281889 - MLT1B LTR MaLR -8 382 1 1474 74 26 0 chr4 28047005 28047195 -174281152 - AluSx SINE Alu -117 195 1 604 256 150 24 chr4 28047353 28047817 -174280530 + MLT1H1 LTR MaLR 1 555 0 732 257 104 27 chr4 28048270 28048638 -174279709 + L2 LINE L2 2731 3146 -167 1587 150 18 18 chr4 28048646 28048926 -174279421 + AluJo SINE Alu 1 280 -32 249 109 0 0 chr4 28048926 28048972 -174279375 + (TCTA)n Simple_repeat Simple_repeat 3 48 0 1214 149 5 0 chr4 28048972 28049167 -174279180 + AluYa5 SINE Alu 108 303 -8 306 250 207 43 chr4 28049186 28049302 -174279045 + L2 LINE L2 3179 3313 0 2510 99 48 14 chr4 28049868 28050220 -174278127 - THE1B LTR MaLR 0 364 1 319 329 35 7 chr4 28051164 28051307 -174277040 - LTR67 LTR ERVL 0 557 411 552 226 149 6 chr4 28051511 28051679 -174276668 + MIR SINE MIR 1 192 -70 415 259 37 37 chr4 28051873 28052008 -174276339 + L2 LINE L2 3179 3313 0 261 270 0 27 chr4 28052020 28052094 -174276253 + L2 LINE L2 3238 3309 -4 202 212 91 15 chr4 28052579 28052645 -174275702 + MIR SINE MIR 80 150 -112 697 250 114 116 chr4 28052716 28053293 -174275054 - MLT1K LTR MaLR -11 577 2 2204 92 0 7 chr4 28053305 28053608 -174274739 - AluSg SINE Alu 0 310 10 236 373 59 26 chr4 28053821 28053974 -174274373 + L2 LINE L2 3115 3272 0 252 220 0 0 chr4 28054423 28054473 -174273874 + GA-rich Low_complexity Low_complexity 4 53 0 257 339 9 18 chr4 28054970 28055082 -174273265 + C-rich Low_complexity Low_complexity 3 113 0 393 221 80 18 chr4 28055395 28055508 -174272839 + MIR SINE MIR 20 139 -123 557 270 98 28 chr4 28055621 28055836 -174272511 - MIR SINE MIR -4 258 29 1055 145 17 90 chr4 28056661 28056895 -174271452 + MER20 DNA MER1_type 3 219 0 2023 102 41 3 chr4 28057107 28057400 -174270947 - AluSq SINE Alu -9 304 1 1691 142 8 0 chr4 28057453 28057721 -174270626 - AluSx SINE Alu -19 293 24 779 301 1 23 chr4 28057824 28058046 -174270301 - MIR SINE MIR -10 252 35 330 273 40 53 chr4 28058117 28058267 -174270080 + MIR SINE MIR 73 220 -42 186 286 0 0 chr4 28058642 28058698 -174269649 + L2 LINE L2 2641 2696 -618 271 301 35 55 chr4 28058698 28058822 -174269525 - L1MDa LINE L1 -3302 3238 3118 2560 42 0 0 chr4 28058822 28059130 -174269217 - AluY SINE Alu -3 308 1 271 301 35 55 chr4 28059130 28059204 -174269143 - L1MDa LINE L1 -3422 3118 3044 569 292 98 51 chr4 28059234 28059399 -174268948 - L1MDa LINE L1 -3640 2900 2744 2017 96 0 33 chr4 28059399 28059702 -174268645 - AluSq SINE Alu -20 293 1 569 292 98 51 chr4 28059702 28059778 -174268569 - L1MDa LINE L1 -3796 2744 2673 2833 6 0 0 chr4 28059778 28060092 -174268255 - AluYb8 SINE Alu -4 314 1 569 292 98 51 chr4 28060092 28060222 -174268125 - L1MDa LINE L1 -3867 2673 2551 1860 124 13 35 chr4 28060222 28060536 -174267811 - AluSx SINE Alu -5 307 1 569 292 98 51 chr4 28060536 28060656 -174267691 - L1MDa LINE L1 -3989 2551 2386 555 196 49 0 chr4 28061103 28061205 -174267142 + Tigger3(Golem) DNA MER2_type 2 108 -2921 * 4494 123 37 12 chr4 28061196 28061930 -174266417 + Tigger3(Golem) DNA MER2_type 2277 3028 -1 965 316 108 58 chr4 28061940 28062144 -174266203 - L2 LINE L2 -583 2731 2538 816 130 8 23 chr4 28062144 28062275 -174266072 + FLAM_C SINE Alu 5 133 0 965 316 108 58 chr4 28062275 28063371 -174264976 - L2 LINE L2 -776 2538 1367 269 273 324 0 chr4 28064297 28064436 -174263911 - MIR3 SINE MIR 0 208 25 911 112 0 0 chr4 28065253 28065387 -174262960 + AluSg/x SINE Alu 176 309 -3 957 200 5 152 chr4 28065388 28065717 -174262630 - L1MC4 LINE L1 -19 8023 7754 1545 136 106 12 chr4 28065717 28066047 -174262300 + MER46B DNA MER2_type 1 236 0 957 200 5 152 chr4 28066047 28066092 -174262255 - L1MC4 LINE L1 -288 7754 7704 188 0 74 0 chr4 28066108 28066135 -174262212 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 2128 101 3 0 chr4 28066137 28066424 -174261923 - AluSq SINE Alu -24 289 2 1737 115 7 7 chr4 28069888 28070157 -174258190 + AluSx SINE Alu 23 291 -21 2138 102 78 3 chr4 28071155 28071488 -174256859 - MER46B DNA MER2_type -3 233 1 271 152 15 30 chr4 28071491 28071557 -174256790 + CT-rich Low_complexity Low_complexity 3 67 0 852 292 12 19 chr4 28071983 28072240 -174256107 + MIR SINE MIR 8 262 0 659 276 174 39 chr4 28072294 28072726 -174255621 - LTR33 LTR ERVL -29 492 3 425 285 124 30 chr4 28072890 28073157 -174255190 + MLT1I LTR MaLR 118 409 0 272 224 158 103 chr4 28074217 28074270 -174254077 - MER5B DNA MER1_type -4 174 125 1953 137 0 3 chr4 28074270 28074577 -174253770 + AluSx SINE Alu 1 306 -6 272 224 158 103 chr4 28074577 28074688 -174253659 - MER5B DNA MER1_type -53 125 1 997 150 15 75 chr4 28074697 28074756 -174253591 + MER5A DNA MER1_type 2 63 -126 1651 191 45 17 chr4 28074756 28075111 -174253236 + MLT1A1 LTR MaLR 1 365 0 997 150 15 75 chr4 28075111 28075251 -174253096 + MER5A DNA MER1_type 63 189 0 469 247 85 89 chr4 28075312 28075559 -174252788 - MIR SINE MIR -7 255 10 1665 192 32 118 chr4 28076130 28076697 -174251650 - MLT2B1 LTR ERVL -2 518 1 1051 190 4 58 chr4 28076728 28076954 -174251393 - MER20 DNA MER1_type -5 214 1 324 264 105 111 chr4 28077261 28077604 -174250743 + MLT1K LTR MaLR 124 533 -55 4297 179 44 32 chr4 28077624 28078319 -174250028 + MER21B LTR ERV1 6 714 -149 183 80 0 0 chr4 28078319 28078344 -174250003 + (AATTG)n Simple_repeat Simple_repeat 2 26 0 4297 179 44 32 chr4 28078344 28078485 -174249862 + MER21B LTR ERV1 714 852 -11 570 218 69 63 chr4 28078561 28078689 -174249658 + MER96 DNA MER1_type? 1 133 -42 4206 13 0 0 chr4 28078689 28079176 -174249171 + L1PA3 LINE L1 5682 6168 0 570 218 69 63 chr4 28079176 28079220 -174249127 + MER96 DNA MER1_type? 133 175 0 441 0 0 0 chr4 28079548 28079597 -174248750 + (TG)n Simple_repeat Simple_repeat 2 50 0 363 334 112 41 chr4 28079654 28079968 -174248379 - L2 LINE L2 -4 3268 2933 752 214 144 0 chr4 28080490 28080663 -174247684 + MIR SINE MIR 18 215 -47 362 212 0 0 chr4 28081332 28081398 -174246949 + MER5A DNA MER1_type 9 74 -115 2080 104 0 16 chr4 28081409 28081717 -174246630 + AluSq SINE Alu 11 313 0 753 185 8 0 chr4 28081735 28081855 -174246492 + AluSq/x SINE Alu 2 125 -187 246 32 0 0 chr4 28081855 28081886 -174246461 + (CATA)n Simple_repeat Simple_repeat 2 32 0 207 339 0 0 chr4 28081908 28081970 -174246377 + MER5A DNA MER1_type 128 189 0 2021 113 0 36 chr4 28082218 28082357 -174245990 + AluSg SINE Alu 1 143 -167 2306 74 0 0 chr4 28082357 28082654 -174245693 + AluY SINE Alu 1 297 -14 2021 113 0 36 chr4 28082654 28082823 -174245524 + AluSg SINE Alu 143 298 -12 232 227 80 0 chr4 28082869 28082944 -174245403 + L1MC4 LINE L1 6612 6692 -1350 6509 129 66 26 chr4 28083018 28083606 -174244741 - Tigger3b DNA MER2_type -1802 1226 663 1685 156 28 10 chr4 28083606 28083894 -174244453 - AluJo SINE Alu -19 293 1 6509 129 66 26 chr4 28083894 28084258 -174244089 - Tigger3b DNA MER2_type -2365 663 216 1851 141 105 3 chr4 28084258 28084564 -174243783 - MER1B DNA MER1_type 0 337 1 6509 129 66 26 chr4 28084564 28084789 -174243558 - Tigger3b DNA MER2_type -2812 216 1 382 230 152 36 chr4 28084867 28085032 -174243315 - HAL1 LINE L1 -186 2321 2138 278 288 0 0 chr4 28085029 28085109 -174243238 - HAL1 LINE L1 -1154 1353 1274 * 2250 139 10 21 chr4 28085645 28086010 -174242337 + MLT1A1 LTR MaLR 2 355 -9 2205 104 0 0 chr4 28086360 28086658 -174241689 + AluSc SINE Alu 1 298 -11 180 326 30 68 chr4 28086745 28086877 -174241470 - MIR SINE MIR -70 192 66 1157 146 19 29 chr4 28087510 28087715 -174240632 + MER20 DNA MER1_type 15 217 -2 322 347 91 40 chr4 28088485 28088883 -174239464 + L2 LINE L2 2844 3261 -11 240 143 0 0 chr4 28088904 28088946 -174239401 + (TGAA)n Simple_repeat Simple_repeat 3 44 0 1477 264 36 36 chr4 28090311 28090810 -174237537 + L1ME3A LINE L1 5504 6002 -168 326 282 0 0 chr4 28090831 28090909 -174237438 + L1ME3A LINE L1 6082 6159 -11 1164 205 21 4 chr4 28091453 28091687 -174236660 + MER115 DNA AcHobo 445 682 -11 520 369 96 29 chr4 28091749 28092166 -174236181 - L3 LINE CR1 -789 788 344 219 214 0 0 chr4 28092177 28092219 -174236128 + CT-rich Low_complexity Low_complexity 2 43 0 976 208 35 44 chr4 28092381 28092607 -174235740 - MER58A DNA MER1_type 0 224 1 1683 169 13 29 chr4 28094223 28094536 -174233811 + AluJo SINE Alu 1 308 -4 313 315 8 23 chr4 28095745 28095875 -174232472 + MIR SINE MIR 13 140 -122 2299 103 0 0 chr4 28095884 28096233 -174232114 + AluSx SINE Alu 1 349 0 1278 169 1 109 chr4 28096235 28096398 -174231949 - MER58 DNA MER1_type -3 2417 2238 1740 156 69 9 chr4 28096398 28096744 -174231603 + L1MA9 LINE L1 5946 6312 0 1278 169 1 109 chr4 28096744 28096787 -174231560 - MER58 DNA MER1_type -182 2238 2192 767 161 0 0 chr4 28096787 28096905 -174231442 - FLAM_C SINE Alu -15 118 1 1278 169 1 109 chr4 28096905 28097122 -174231225 - MER58 DNA MER1_type -228 2192 3 204 250 111 28 chr4 28097485 28097557 -174230790 + L2 LINE L2 3235 3312 -1 665 268 105 0 chr4 28097709 28097899 -174230448 + MIR SINE MIR 47 256 -6 788 225 106 14 chr4 28097908 28097950 -174230397 - MIR SINE MIR -11 251 214 1579 165 0 81 chr4 28097950 28098272 -174230075 - AluJo SINE Alu -16 296 1 788 225 106 14 chr4 28098272 28098447 -174229900 - MIR SINE MIR -48 214 14 907 216 188 50 chr4 28099593 28099955 -174228392 + LTR16A1 LTR ERVL 43 454 -3 213 347 32 0 chr4 28099958 28100053 -174228294 + L2 LINE L2 2658 2755 -559 182 205 0 0 chr4 28100269 28100308 -174228039 + L2 LINE L2 3269 3307 -6 1338 256 43 47 chr4 28102033 28102521 -174225826 + MLT1H LTR MaLR 57 542 -7 1887 117 7 3 chr4 28102927 28103246 -174225101 + AluSq SINE Alu 1 320 0 1480 174 58 16 chr4 28103246 28103567 -174224780 - MLT2D LTR ERVL -7 390 16 1551 146 52 4 chr4 28103567 28103835 -174224512 - AluJo SINE Alu -10 302 22 1853 195 39 47 chr4 28103885 28104352 -174223995 + MLT1C LTR MaLR 3 465 -2 212 250 36 18 chr4 28104748 28104804 -174223543 + MIR SINE MIR 26 82 -180 368 259 99 61 chr4 28104876 28105007 -174223340 - MIR SINE MIR -118 144 9 2096 120 10 0 chr4 28105113 28105413 -174222934 + AluSx SINE Alu 1 303 -9 2269 166 63 14 chr4 28106341 28106786 -174221561 - MLT1C LTR MaLR 0 467 1 356 286 92 34 chr4 28106809 28106928 -174221419 + L2 LINE L2 3145 3270 -2 421 316 114 10 chr4 28106968 28107161 -174221186 + MIR SINE MIR 38 250 -12 2156 114 0 0 chr4 28107165 28107463 -174220884 - AluSx SINE Alu -14 298 1 1868 153 58 22 chr4 28107484 28107844 -174220503 + THE1C LTR MaLR 1 373 -2 433 309 89 44 chr4 28107971 28108356 -174219991 - MLT1K LTR MaLR -2 586 151 387 223 246 0 chr4 28109350 28109480 -174218867 - MIR SINE MIR -69 193 32 302 294 50 8 chr4 28109499 28109618 -174218729 - MIR SINE MIR -43 219 96 720 298 162 17 chr4 28110584 28110855 -174217492 - L2 LINE L2 -1 3312 3082 1903 142 192 0 chr4 28110855 28111214 -174217133 - MSTC LTR MaLR 0 428 1 720 298 162 17 chr4 28111214 28111409 -174216938 - L2 LINE L2 -231 3082 2760 351 0 0 0 chr4 28111437 28111476 -174216871 + (TG)n Simple_repeat Simple_repeat 1 39 0 1231 179 0 91 chr4 28111476 28111783 -174216564 - AluJo SINE Alu -33 279 1 1988 150 32 12 chr4 28112001 28112342 -174216005 - MER7A DNA MER2_type 0 346 1 3398 134 12 39 chr4 28112366 28112935 -174215412 - MLT2B3 LTR ERVL 0 554 1 27 29 0 0 chr4 28113304 28113338 -174215009 + AT_rich Low_complexity Low_complexity 1 34 0 1121 220 20 16 chr4 28114030 28114275 -174214072 + MLT1A2 LTR MaLR 1 246 -128 231 132 26 0 chr4 28114275 28114313 -174214034 - Tigger3(Golem) DNA MER2_type -189 2840 2802 * 620 199 13 45 chr4 28114292 28114478 -174213869 + MLT1A2 LTR MaLR 189 372 -2 483 321 165 14 chr4 28114517 28114729 -174213618 + MIR SINE MIR 19 262 0 2215 71 31 0 chr4 28114776 28115070 -174213277 + AluSg SINE Alu 1 303 -7 296 288 0 12 chr4 28115201 28115281 -174213066 + MLT1H1 LTR MaLR 1 79 -476 255 271 53 83 chr4 28116803 28116819 -174211528 - MIR SINE MIR -3 259 244 976 183 31 54 chr4 28116819 28117043 -174211304 + MER20 DNA MER1_type 1 219 0 255 271 53 83 chr4 28117043 28117159 -174211188 - MIR SINE MIR -18 244 131 325 194 0 45 chr4 28117195 28117262 -174211085 - L1MC4 LINE L1 -1339 6703 6640 815 217 90 0 chr4 28117273 28117439 -174210908 - MIR SINE MIR -58 204 24 342 329 91 52 chr4 28117873 28118180 -174210167 + L2 LINE L2 2952 3270 -2 271 323 20 0 chr4 28118382 28118481 -174209866 - L3 LINE CR1 -325 1252 1152 363 245 139 118 chr4 28118603 28118934 -174209413 - MER102b DNA MER1_type 0 341 4 186 282 16 97 chr4 28121167 28121291 -174207056 + L2 LINE L2 2081 2194 -1120 443 271 20 45 chr4 28121572 28121771 -174206576 - MER112 DNA MER1_type -1 259 66 1291 112 208 19 chr4 28121809 28122069 -174206278 - AluSg1 SINE Alu 0 309 1 325 250 0 0 chr4 28122136 28122200 -174206147 + L2 LINE L2 3248 3311 -2 21 0 0 0 chr4 28122682 28122703 -174205644 + AT_rich Low_complexity Low_complexity 1 21 0 573 250 62 50 chr4 28123293 28123517 -174204830 + MIR SINE MIR 16 246 -16 435 269 157 27 chr4 28123844 28124067 -174204280 + L1MC4a LINE L1 5683 5934 -1874 2086 123 3 3 chr4 28124276 28124584 -174203763 + AluSx SINE Alu 2 309 -3 546 261 22 22 chr4 28125428 28125566 -174202781 + MIR SINE MIR 103 240 -22 525 125 0 0 chr4 28125690 28125762 -174202585 + AluJ/FLAM SINE Alu 2 73 -239 652 299 62 38 chr4 28126667 28126709 -174201638 + L2 LINE L2 3016 3056 -257 2443 66 3 0 chr4 28126709 28127014 -174201333 - AluSc SINE Alu -3 306 1 652 299 62 38 chr4 28127014 28127262 -174201085 + L2 LINE L2 3056 3313 0 1704 122 91 0 chr4 28127720 28128006 -174200341 - AluSx SINE Alu 0 312 1 553 152 0 9 chr4 28128111 28128223 -174200124 - MER96B DNA MER1_type? -233 184 74 1897 201 92 25 chr4 28128224 28128657 -174199690 + MLT1C LTR MaLR 6 467 0 283 129 226 0 chr4 28128661 28128723 -174199624 - MER96B DNA MER1_type? -341 76 1 216 213 170 0 chr4 28129168 28129262 -174199085 - L3b LINE CR1 -323 1260 1151 25 31 0 0 chr4 28129335 28129367 -174198980 + AT_rich Low_complexity Low_complexity 1 32 0 258 204 41 0 chr4 28129368 28129417 -174198930 - MER5A DNA MER1_type -77 112 62 1703 150 17 10 chr4 28129417 28129717 -174198630 - AluSx SINE Alu 0 312 11 1903 140 3 0 chr4 28130022 28130315 -174198032 - AluSx SINE Alu -18 294 1 483 211 0 0 chr4 28130341 28130431 -174197916 - Tigger5 DNA MER2_type 0 2323 2234 234 273 0 18 chr4 28130438 28130493 -174197854 - Tigger5 DNA MER2_type -2268 55 2 198 0 0 0 chr4 28132584 28132606 -174195741 + (TAA)n Simple_repeat Simple_repeat 1 22 0 1966 91 29 0 chr4 28132617 28132893 -174195454 - AluSx SINE Alu -28 284 1 196 217 43 0 chr4 28132974 28133020 -174195327 + L2 LINE L2 3258 3305 -8 634 277 178 5 chr4 28136518 28136731 -174191616 - MIR SINE MIR 0 262 13 316 294 198 8 chr4 28136780 28136906 -174191441 - MIR SINE MIR 0 262 113 610 224 200 5 chr4 28136913 28137118 -174191229 - MIR SINE MIR 0 262 18 2092 102 0 17 chr4 28137439 28137734 -174190613 + AluSx SINE Alu 1 290 -22 253 182 55 18 chr4 28138917 28138972 -174189375 + MER117 DNA MER1_type 115 171 -26 204 283 0 0 chr4 28138999 28139045 -174189302 - MIR SINE MIR -68 140 95 * 478 282 69 0 chr4 28139030 28139161 -174189186 + L2 LINE L2 3174 3313 0 236 331 118 30 chr4 28139425 28139594 -174188753 - MIR3 SINE MIR -11 197 14 317 396 97 21 chr4 28140072 28140403 -174187944 + L3b LINE CR1 1113 1468 -115 478 313 125 7 chr4 28140404 28140685 -174187662 + L1MD3 LINE L1 5624 5937 -1871 359 290 0 61 chr4 28141158 28141289 -174187058 + MIR SINE MIR 98 220 -42 585 268 10 31 chr4 28141787 28141981 -174186366 - MER117 DNA MER1_type -6 191 2 234 240 7 130 chr4 28142025 28142096 -174186251 + L2 LINE L2 2918 2963 -309 2052 144 0 3 chr4 28142096 28142409 -174185938 - AluSx SINE Alu 0 312 1 234 240 7 130 chr4 28142409 28142483 -174185864 + L2 LINE L2 2963 3045 -227 187 226 38 19 chr4 28142486 28142539 -174185808 + L2 LINE L2 3219 3272 0 552 280 76 42 chr4 28142578 28142748 -174185599 + MIR SINE MIR 3 185 -77 1935 112 3 20 chr4 28142748 28143042 -174185305 + AluSx SINE Alu 1 289 -23 552 280 76 42 chr4 28143042 28143107 -174185240 + MIR SINE MIR 185 246 -16 273 279 0 15 chr4 28143171 28143239 -174185108 + L2 LINE L2 3206 3272 0 853 303 126 24 chr4 28143790 28144585 -174183762 - L2 LINE L2 0 3313 2430 657 241 93 12 chr4 28146093 28146308 -174182039 + L1MD3 LINE L1 6116 7978 -17 1663 158 0 4 chr4 28146317 28146582 -174181765 + AluJo SINE Alu 32 295 -17 460 262 37 48 chr4 28146979 28147166 -174181181 - MER5A DNA MER1_type -4 185 1 581 218 147 6 chr4 28147431 28147601 -174180746 - MIR SINE MIR -25 237 44 2311 89 0 13 chr4 28147702 28148016 -174180331 + AluSx SINE Alu 3 312 0 225 284 34 0 chr4 28148134 28148222 -174180125 + CT-rich Low_complexity Low_complexity 3 93 0 573 138 0 146 chr4 28149730 28149860 -174178487 + L1M3 LINE L1 5444 5554 -629 2200 178 95 6 chr4 28150833 28151305 -174177042 - Charlie1b DNA MER1_type 0 523 10 1594 187 6 19 chr4 28151675 28151990 -174176357 - AluJb SINE Alu -1 311 1 1621 226 118 48 chr4 28152275 28152623 -174175724 + L1ME3A LINE L1 5585 5986 -184 2156 103 3 3 chr4 28152623 28152924 -174175423 - AluSg SINE Alu -8 302 2 1621 226 118 48 chr4 28152924 28153115 -174175232 + L1ME3A LINE L1 5986 6162 -8 1621 186 3 22 chr4 28153149 28153467 -174174880 + AluJb SINE Alu 1 312 0 181 293 13 40 chr4 28153608 28153683 -174174664 + L2 LINE L2 3199 3271 -1 217 346 25 0 chr4 28153805 28153886 -174174461 + L2 LINE L2 3176 3258 -14 672 233 149 28 chr4 28154077 28154365 -174173982 + MER5C DNA MER1_type 1 323 -1 332 200 89 22 chr4 28155029 28155119 -174173228 - MLT1K LTR MaLR -8 580 485 252 191 111 0 chr4 28155256 28155319 -174173028 + L1ME LINE L1 5677 5746 -375 26 64 0 0 chr4 28155392 28155439 -174172908 + AT_rich Low_complexity Low_complexity 1 47 0 1995 121 7 13 chr4 28155621 28155928 -174172419 + AluSq SINE Alu 1 305 -8 519 17 0 0 chr4 28155928 28155988 -174172359 + (GGAA)n Simple_repeat Simple_repeat 1 60 0 944 280 130 50 chr4 28156107 28156629 -174171718 + MLT1K LTR MaLR 18 581 -7 2249 155 31 10 chr4 28156632 28157020 -174171327 - MSTD LTR MaLR 0 396 1 195 69 0 0 chr4 28157533 28157562 -174170785 + (T)n Simple_repeat Simple_repeat 1 29 0 476 317 0 28 chr4 28158137 28158338 -174170009 + C-rich Low_complexity Low_complexity 1 195 0 844 211 61 33 chr4 28159369 28159549 -174168798 - MER5A DNA MER1_type -4 185 1 2203 98 0 7 chr4 28160834 28161141 -174167206 - AluSg SINE Alu -5 305 1 1961 146 3 0 chr4 28161332 28161633 -174166714 + AluJb SINE Alu 5 306 -6 284 271 68 120 chr4 28161907 28162173 -174166174 + L2 LINE L2 3021 3272 0 277 271 14 0 chr4 28162180 28162250 -174166097 + CT-rich Low_complexity Low_complexity 3 73 0 2080 105 10 7 chr4 28163477 28163782 -174164565 + AluSg SINE Alu 3 308 -2 526 308 81 32 chr4 28164287 28164472 -174163875 - MIR SINE MIR -66 196 3 285 289 100 61 chr4 28164569 28164749 -174163598 + MIR SINE MIR 14 200 -62 683 251 90 59 chr4 28165004 28165327 -174163020 + MLT1F LTR MaLR 210 542 0 389 319 48 43 chr4 28165496 28165684 -174162663 - L3b LINE CR1 -86 1497 1309 1214 201 54 125 chr4 28166521 28166650 -174161697 + MLT1C LTR MaLR 1 138 -329 1959 131 7 13 chr4 28166650 28166955 -174161392 + AluSx SINE Alu 1 303 -9 1214 201 54 125 chr4 28166955 28167015 -174161332 + MLT1C LTR MaLR 138 201 -266 2048 127 10 0 chr4 28167015 28167323 -174161024 + AluSx SINE Alu 1 311 -1 1214 201 54 125 chr4 28167323 28167635 -174160712 + MLT1C LTR MaLR 201 467 0 218 350 31 0 chr4 28167885 28167982 -174160365 - MIR3 SINE MIR -2 206 107 24 32 0 0 chr4 28169560 28169591 -174158756 + AT_rich Low_complexity Low_complexity 1 31 0 809 172 80 18 chr4 28170585 28170748 -174157599 - FRAM SINE Alu -4 172 1 198 0 0 0 chr4 28170754 28170776 -174157571 + (GAAAA)n Simple_repeat Simple_repeat 2 23 0 381 236 107 29 chr4 28170955 28171095 -174157252 - HAL1 LINE L1 -1345 1162 1012 517 304 53 31 chr4 28171285 28171512 -174156835 - HAL1 LINE L1 -1915 592 361 1774 223 49 29 chr4 28172104 28172127 -174156220 - MLT1C LTR MaLR 0 467 446 1989 107 35 98 chr4 28172127 28172493 -174155854 + MER61A LTR ERV1 1 343 0 1774 223 49 29 chr4 28172493 28172922 -174155425 - MLT1C LTR MaLR -21 446 6 2334 84 0 0 chr4 28173077 28173375 -174154972 - AluSg SINE Alu -12 298 1 262 214 18 36 chr4 28173430 28173486 -174154861 + L2 LINE L2 3201 3255 -17 307 303 24 79 chr4 28173679 28173933 -174154414 + L2 LINE L2 2853 3092 -180 749 128 0 26 chr4 28174241 28174358 -174153989 + FLAM_C SINE Alu 19 132 -11 1442 248 49 27 chr4 28174710 28175117 -174153230 + LTR16C LTR ERVL 74 489 -2 1837 81 24 0 chr4 28175217 28175464 -174152883 + AluSx SINE Alu 1 253 -59 489 247 147 17 chr4 28176302 28176411 -174151936 - L1ME4a LINE L1 -31 6090 5997 255 61 0 0 chr4 28176411 28176444 -174151903 + (TG)n Simple_repeat Simple_repeat 2 34 0 489 247 147 17 chr4 28176444 28176565 -174151782 - L1ME4a LINE L1 -124 5997 5830 222 361 72 0 chr4 28176887 28177067 -174151280 - MIR3 SINE MIR -9 199 7 800 211 23 0 chr4 28178775 28178946 -174149401 - MER45A DNA AcHobo -1 177 3 598 295 14 17 chr4 28179069 28179330 -174149017 - MIR SINE MIR 0 262 45 306 320 145 13 chr4 28179550 28179778 -174148569 - MIR SINE MIR -1 261 4 181 286 0 0 chr4 28179782 28179824 -174148523 + L3 LINE CR1 1533 1574 -3 1421 234 35 9 chr4 28180441 28180670 -174147677 - MLT1C LTR MaLR -43 424 182 1777 158 23 0 chr4 28180670 28180974 -174147373 - AluJo SINE Alu -1 311 1 1421 234 35 9 chr4 28180974 28181090 -174147257 - MLT1C LTR MaLR -285 182 70 631 261 208 45 chr4 28181090 28181576 -174146771 - MER34B LTR ERV1 0 565 1 647 187 110 87 chr4 28181702 28181921 -174146426 - MIR SINE MIR -11 251 28 7823 87 7 19 chr4 28182167 28183250 -174145097 + MER11C LTR ERVK 3 1071 0 735 291 141 6 chr4 28183313 28183633 -174144714 + L2 LINE L2 2951 3313 0 213 243 0 0 chr4 28183696 28183733 -174144614 + L2 LINE L2 3183 3219 -94 236 267 19 27 chr4 28184687 28184790 -174143557 + MIR SINE MIR 16 114 -94 615 125 0 31 chr4 28184979 28185075 -174143272 - MER8 DNA MER2_type 0 239 147 1570 119 16 4 chr4 28185076 28185327 -174143020 + AluSx SINE Alu 1 254 -58 1100 165 0 30 chr4 28186121 28186321 -174142026 + AluJo SINE Alu 85 278 -34 180 0 0 0 chr4 28186321 28186341 -174142006 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 370 253 79 105 chr4 28186436 28186626 -174141721 + MLT1L LTR MaLR 22 206 -409 23 0 0 0 chr4 28186824 28186847 -174141500 + AT_rich Low_complexity Low_complexity 1 23 0 2152 99 0 0 chr4 28186850 28187142 -174141205 - AluSx SINE Alu -20 292 1 615 125 0 31 chr4 28187143 28187239 -174141108 + MER8 DNA MER2_type 147 239 0 236 267 19 27 chr4 28187429 28187532 -174140815 - MIR SINE MIR -94 114 16 435 303 20 25 chr4 28187829 28188056 -174140291 + CT-rich Low_complexity Low_complexity 1 225 0 2409 43 3 17 chr4 28188406 28188707 -174139640 - AluY SINE Alu -14 297 1 62 0 0 0 chr4 28188714 28188776 -174139571 + AT_rich Low_complexity Low_complexity 1 62 0 673 244 19 12 chr4 28188789 28188949 -174139398 - MER8 DNA MER2_type -78 161 1 226 167 67 17 chr4 28189118 28189178 -174139169 + LTR37B LTR ERV1 1 63 -405 256 95 0 0 chr4 28189183 28189225 -174139122 - L1MA7 LINE L1 -1 6290 6249 719 199 8 0 chr4 28189239 28189370 -174138977 - FLAM_A SINE Alu -1 132 1 913 198 142 81 chr4 28189397 28189792 -174138555 + LTR37B LTR ERV1 48 466 -2 1242 203 44 15 chr4 28189863 28190134 -174138213 - AluJo SINE Alu -22 290 12 556 252 87 0 chr4 28190166 28190293 -174138054 - MIR SINE MIR -35 227 90 295 228 38 13 chr4 28190323 28190402 -174137945 - MIR SINE MIR -64 198 118 1187 289 12 56 chr4 28190628 28191126 -174137221 + MLT1J LTR MaLR 36 511 0 609 298 132 10 chr4 28191803 28192008 -174136339 + MIR SINE MIR 33 262 0 391 199 47 170 chr4 28192018 28192093 -174136254 - MIR SINE MIR 0 262 218 1958 119 11 0 chr4 28192093 28192379 -174135968 - AluSx SINE Alu -23 289 1 391 199 47 170 chr4 28192379 28192474 -174135873 - MIR SINE MIR -44 218 113 815 218 78 22 chr4 28192482 28192661 -174135686 - MSTD LTR MaLR 0 396 208 1993 119 3 17 chr4 28193070 28193372 -174134975 - AluSx SINE Alu -14 298 1 302 318 11 0 chr4 28193497 28193585 -174134762 - MIR SINE MIR -13 249 161 1960 129 90 31 chr4 28193595 28193952 -174134395 - MLT1B LTR MaLR -12 378 1 550 231 41 8 chr4 28193956 28194077 -174134270 - MIR SINE MIR -103 159 35 1560 103 65 0 chr4 28194077 28194309 -174134038 + AluSx SINE Alu 43 289 -23 254 324 29 9 chr4 28194381 28194486 -174133861 - MIR SINE MIR -72 136 30 620 276 62 58 chr4 28194799 28194852 -174133495 - MIR SINE MIR 0 262 211 2103 114 7 0 chr4 28194852 28195150 -174133197 - AluSx SINE Alu -12 300 1 620 276 62 58 chr4 28195150 28195321 -174133026 - MIR SINE MIR -51 211 37 616 264 111 0 chr4 28195866 28196082 -174132265 + L2 LINE L2 2733 2972 -342 198 93 0 116 chr4 28196126 28196169 -174132178 + L2 LINE L2 3235 3272 0 1937 111 0 3 chr4 28197949 28198237 -174130110 - AluSx SINE Alu -25 287 1 198 0 0 0 chr4 28198385 28198407 -174129940 + (CA)n Simple_repeat Simple_repeat 1 22 0 1399 162 45 42 chr4 28198490 28198799 -174129548 + AluJo SINE Alu 1 310 -2 184 358 12 12 chr4 28198830 28198911 -174129436 - MIR SINE MIR -111 97 17 1329 247 93 21 chr4 28198948 28199434 -174128913 - LTR33A LTR ERVL -2 521 1 1972 78 3 71 chr4 28199496 28199830 -174128517 + AluSp SINE Alu 1 313 0 267 103 0 0 chr4 28199834 28199873 -174128474 + (TG)n Simple_repeat Simple_repeat 1 39 0 498 313 86 15 chr4 28199893 28200091 -174128256 + MIR SINE MIR 34 245 -17 240 227 45 73 chr4 28200098 28200208 -174128139 - L1ME LINE L1 -300 5870 5764 292 277 209 14 chr4 28200463 28200611 -174127736 - MIR SINE MIR -49 213 37 180 357 30 60 chr4 28201131 28201431 -174126916 + L2 LINE L2 2686 2976 -338 2020 133 3 0 chr4 28201565 28201865 -174126482 - AluSx SINE Alu -11 301 1 643 138 0 0 chr4 28201865 28201959 -174126388 - AluJ/FLAM SINE Alu -216 96 3 1478 228 18 73 chr4 28202056 28202261 -174126086 - MLT1C LTR MaLR 0 467 299 2212 98 3 0 chr4 28202261 28202556 -174125791 - AluSp SINE Alu -17 296 1 1478 228 18 73 chr4 28202556 28202801 -174125546 - MLT1C LTR MaLR -168 299 42 860 268 61 0 chr4 28203351 28203564 -174124783 + LTR16A LTR ERVL 57 282 -168 1837 157 26 50 chr4 28203596 28203748 -174124599 + MLT1B LTR MaLR 23 177 -213 2177 88 26 3 chr4 28203748 28204053 -174124294 + AluSp SINE Alu 1 312 -1 1837 157 26 50 chr4 28204053 28204150 -174124197 + MLT1B LTR MaLR 177 275 -115 2165 114 0 13 chr4 28204150 28204465 -174123882 + AluSx SINE Alu 1 311 -1 1837 157 26 50 chr4 28204465 28204591 -174123756 + MLT1B LTR MaLR 275 390 0 440 267 56 0 chr4 28204594 28204755 -174123592 + LTR16A LTR ERVL 276 445 -5 2032 183 27 36 chr4 28205628 28205855 -174122492 - L1MB3 LINE L1 -8 6175 5952 2025 116 18 0 chr4 28205855 28206139 -174122208 - AluSq SINE Alu -22 291 3 2032 183 27 36 chr4 28206139 28206360 -174121987 - L1MB3 LINE L1 -231 5952 5731 479 313 56 0 chr4 28206401 28206596 -174121751 - MIR SINE MIR -41 221 16 524 189 60 153 chr4 28206597 28206995 -174121352 + L1MC5 LINE L1 7377 7722 -239 1957 123 3 20 chr4 28206995 28207296 -174121051 + AluSx SINE Alu 1 296 -16 524 189 60 153 chr4 28207296 28207393 -174120954 + L1MC5 LINE L1 7722 7826 -135 2035 121 3 7 chr4 28207398 28207703 -174120644 + AluSx SINE Alu 1 304 -8 1022 216 56 42 chr4 28207726 28208153 -174120194 + L1MC5 LINE L1 7494 7926 -35 320 273 45 45 chr4 28208185 28208317 -174120030 - MIR SINE MIR -118 144 13 620 318 41 34 chr4 28208350 28208617 -174119730 + MLT1K LTR MaLR 44 312 -276 416 134 0 15 chr4 28208662 28208729 -174119618 - MIR SINE MIR -101 161 96 376 299 147 43 chr4 28208734 28208965 -174119382 + MLT1K LTR MaLR 327 581 -7 348 269 97 28 chr4 28209024 28209169 -174119178 - MIR SINE MIR -6 256 102 816 281 87 8 chr4 28209245 28209487 -174118860 - MIR SINE MIR 0 262 2 626 226 65 45 chr4 28210280 28210479 -174117868 + MLT1K LTR MaLR 385 587 -1 333 259 83 139 chr4 28211106 28211565 -174116782 + MLT1K LTR MaLR 156 588 0 2357 86 0 0 chr4 28211656 28211960 -174116387 + AluSx SINE Alu 1 304 -8 268 136 15 91 chr4 28213572 28213638 -174114709 - MLT2B3 LTR ERVL -2 552 458 189 0 0 0 chr4 28213638 28213659 -174114688 + (TAGA)n Simple_repeat Simple_repeat 1 21 0 364 286 67 82 chr4 28213659 28214001 -174114346 + L1MEd LINE L1 845 1181 -4938 417 179 20 20 chr4 28214008 28214159 -174114188 + (TAGA)n Simple_repeat Simple_repeat 3 153 0 2000 191 12 11 chr4 28214162 28214542 -174113805 - MLT2D LTR ERVL -20 534 8 344 270 195 45 chr4 28214570 28214770 -174113577 - MIR SINE MIR -20 242 13 258 351 65 7 chr4 28214872 28215026 -174113321 + L2 LINE L2 1749 1911 -1403 229 283 50 68 chr4 28215878 28215928 -174112419 + L1MEd LINE L1 1254 1303 -5227 1599 82 0 32 chr4 28215928 28216148 -174112199 - AluY SINE Alu -13 298 86 229 283 50 68 chr4 28216148 28216173 -174112174 + L1MEd LINE L1 1303 1327 -5203 2028 141 3 3 chr4 28216173 28216486 -174111861 + AluSp SINE Alu 1 313 0 229 283 50 68 chr4 28216486 28216808 -174111539 + L1MEd LINE L1 1327 1645 -4885 326 261 35 70 chr4 28216817 28216851 -174111496 + L1MEd LINE L1 1741 1775 -4946 1192 40 0 14 chr4 28216851 28216999 -174111348 - L1PA5 LINE L1 -4 6150 6005 326 261 35 70 chr4 28216999 28217106 -174111241 + L1MEd LINE L1 1775 1877 -4844 981 277 40 8 chr4 28217109 28217362 -174110985 - MIR SINE MIR 0 262 2 231 275 0 0 chr4 28217372 28217441 -174110906 + HAL1 LINE L1 1538 1606 -901 22 0 0 0 chr4 28217613 28217635 -174110712 + AT_rich Low_complexity Low_complexity 1 22 0 2157 97 0 57 chr4 28217658 28217989 -174110358 - AluSx SINE Alu 0 312 1 526 266 126 33 chr4 28218178 28219047 -174109300 + L1MEd LINE L1 2442 3401 -3139 499 271 70 73 chr4 28219289 28219603 -174108744 + L1MEd LINE L1 4423 4735 -1805 189 0 0 0 chr4 28219733 28219754 -174108593 + (TC)n Simple_repeat Simple_repeat 2 22 0 349 300 107 29 chr4 28219921 28220061 -174108286 + L2 LINE L2 3122 3272 0 946 169 18 0 chr4 28220433 28220599 -174107748 - AluJ SINE Alu -13 299 131 396 243 0 0 chr4 28220601 28220712 -174107635 + (TA)n Simple_repeat Simple_repeat 2 112 0 685 124 25 58 chr4 28220712 28220833 -174107514 - AluJ SINE Alu -190 122 6 210 315 81 34 chr4 28220996 28221145 -174107202 + L2 LINE L2 2932 3087 -185 263 254 32 0 chr4 28221298 28221361 -174106986 + MLT1K LTR MaLR 157 221 -367 351 282 126 24 chr4 28221448 28221654 -174106693 + MLT1K LTR MaLR 359 585 -3 360 0 0 0 chr4 28221996 28222036 -174106311 + (TG)n Simple_repeat Simple_repeat 2 41 0 247 345 56 25 chr4 28222468 28222665 -174105682 + L2 LINE L2 2882 3084 -188 297 309 40 47 chr4 28222822 28222971 -174105376 + MER5A DNA MER1_type 1 148 -41 * 362 236 32 71 chr4 28222846 28223016 -174105331 - MER5B DNA MER1_type -16 173 9 845 283 55 0 chr4 28223174 28223393 -174104954 + MIR SINE MIR 5 235 -27 443 282 173 0 chr4 28225594 28225750 -174102597 - MER5A DNA MER1_type 0 189 7 1921 176 32 19 chr4 28226086 28226455 -174101892 + MLT1A2 LTR MaLR 1 374 0 260 255 57 66 chr4 28226743 28226849 -174101498 - L3 LINE CR1 -287 1290 1186 758 183 71 24 chr4 28226882 28227051 -174101296 - MER5B DNA MER1_type 0 178 2 238 329 24 12 chr4 28227237 28227319 -174101028 + MIR SINE MIR 63 145 -63 602 219 178 56 chr4 28227329 28227373 -174100974 - MLT1H LTR MaLR -6 543 506 2283 116 48 20 chr4 28227373 28227727 -174100620 - THE1B LTR MaLR 0 364 1 602 219 178 56 chr4 28227727 28227969 -174100378 - MLT1H LTR MaLR -43 506 222 1594 195 98 30 chr4 28228022 28228483 -174099864 - LTR48B LTR ERV1 -2 642 151 315 323 0 0 chr4 28228488 28228584 -174099763 - MER34 LTR ERV1 -446 96 1 369 305 93 13 chr4 28228679 28228830 -174099517 - L2 LINE L2 0 3272 3110 446 81 0 0 chr4 28229466 28229528 -174098819 - Alu SINE Alu -11 301 240 2327 158 35 5 chr4 28229529 28229876 -174098471 + MER41B LTR ERV1 218 580 -55 1760 141 30 3 chr4 28229876 28230173 -174098174 - AluSx SINE Alu -7 305 1 2327 158 35 5 chr4 28230173 28230231 -174098116 + MER41B LTR ERV1 580 635 0 213 39 0 0 chr4 28230817 28230843 -174097504 + (TG)n Simple_repeat Simple_repeat 1 26 0 734 229 78 33 chr4 28230843 28231254 -174097093 - MLT1K LTR MaLR -12 576 100 357 204 169 38 chr4 28233154 28233382 -174094965 - LTR16C LTR ERVL -24 467 158 276 30 0 0 chr4 28233968 28234001 -174094346 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 1737 148 0 3 chr4 28234001 28234284 -174094063 - AluJo SINE Alu -30 282 1 684 167 83 5 chr4 28234294 28234486 -174093861 - MER69B DNA AcHobo -16 1210 1004 2219 254 84 33 chr4 28234498 28235223 -174093124 + MER69B DNA AcHobo 207 968 -258 242 158 0 0 chr4 28235233 28235271 -174093076 + L1MD3 LINE L1 7730 7767 -228 820 250 56 49 chr4 28235393 28235677 -174092670 + MLT1J LTR MaLR 224 509 -2 463 278 204 21 chr4 28236024 28236215 -174092132 + MIR SINE MIR 37 262 0 394 310 121 55 chr4 28236343 28236723 -174091624 - L2 LINE L2 -920 2394 1961 1621 138 0 50 chr4 28236723 28237021 -174091326 + AluJb SINE Alu 13 295 -17 394 310 121 55 chr4 28237021 28237221 -174091126 - L2 LINE L2 -1353 1961 1776 208 189 0 38 chr4 28237254 28237307 -174091040 + GA-rich Low_complexity Low_complexity 4 54 0 2000 112 0 17 chr4 28240524 28240820 -174087527 + AluSx SINE Alu 2 292 -20 300 328 9 17 chr4 28240901 28241017 -174087330 + MIR3 SINE MIR 89 203 -5 232 307 59 30 chr4 28241099 28241200 -174087147 + MIR SINE MIR 12 115 -147 263 305 43 105 chr4 28241222 28241432 -174086915 - L2 LINE L2 -1 3271 3075 700 222 122 71 chr4 28242843 28243154 -174085193 - MLT1H LTR MaLR -6 543 217 253 162 15 73 chr4 28243296 28243364 -174084983 - MLT1H LTR MaLR -459 83 20 859 293 79 38 chr4 28243798 28244190 -174084157 - LTR33A LTR ERVL -114 409 2 206 261 0 0 chr4 28244788 28244834 -174083513 + (CATA)n Simple_repeat Simple_repeat 1 46 0 333 353 75 6 chr4 28244937 28245110 -174083237 - MIR SINE MIR -66 196 12 355 241 149 0 chr4 28245855 28245942 -174082405 + L2 LINE L2 3213 3312 -1 24 32 0 0 chr4 28246046 28246077 -174082270 + AT_rich Low_complexity Low_complexity 1 31 0 1313 244 132 28 chr4 28246369 28246428 -174081919 + L2 LINE L2 1619 1670 -1644 2218 76 0 20 chr4 28246428 28246732 -174081615 - AluSg1 SINE Alu -11 298 1 1313 244 132 28 chr4 28246732 28247171 -174081176 + L2 LINE L2 1670 2169 -1145 682 171 9 0 chr4 28247210 28247321 -174081026 + FRAM SINE Alu 54 165 -11 215 146 24 0 chr4 28247707 28247748 -174080599 + CT-rich Low_complexity Low_complexity 2 43 0 268 313 107 27 chr4 28247759 28247871 -174080476 - L2 LINE L2 -50 3222 3102 211 333 42 0 chr4 28247848 28247944 -174080403 - L2 LINE L2 -470 2844 2745 * 212 0 36 0 chr4 28249892 28249920 -174078427 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2749 162 32 0 chr4 28250019 28250519 -174077828 + L1MB3 LINE L1 5661 6176 -7 1946 151 0 0 chr4 28250871 28251183 -174077164 + AluJb SINE Alu 1 312 0 579 248 29 15 chr4 28251738 28251947 -174076400 + L1MA10 LINE L1 5963 6334 0 1811 156 0 28 chr4 28252057 28252377 -174075970 - AluJb SINE Alu -1 311 1 1013 182 223 31 chr4 28252511 28252735 -174075612 - L1ME1 LINE L1 -12 6154 5860 1280 171 9 0 chr4 28252735 28252952 -174075395 - MER20 DNA MER1_type 0 219 1 1013 182 223 31 chr4 28252952 28253018 -174075329 - L1ME1 LINE L1 -306 5860 5808 2161 114 62 28 chr4 28253360 28253712 -174074635 + THE1B LTR MaLR 1 364 0 1297 250 165 56 chr4 28254661 28255399 -174072948 - L2 LINE L2 -4 3309 2456 2379 69 13 0 chr4 28255399 28255704 -174072643 + AluY SINE Alu 1 309 -2 1297 250 165 56 chr4 28255704 28255819 -174072528 - L2 LINE L2 -857 2456 2355 269 249 7 74 chr4 28255850 28255983 -174072364 - AluJ/FRAM SINE Alu -11 291 227 1393 181 54 4 chr4 28256220 28256479 -174071868 - AluJo SINE Alu -27 285 14 524 291 6 18 chr4 28256594 28256759 -174071588 - L2 LINE L2 -317 2996 2834 1529 233 104 64 chr4 28256792 28256887 -174071460 - L2 LINE L2 -958 2356 2266 1968 142 30 0 chr4 28256887 28257190 -174071157 + AluJo SINE Alu 1 312 0 1529 233 104 64 chr4 28257190 28257785 -174070562 - L2 LINE L2 -1048 2266 1638 272 286 0 0 chr4 28260093 28260156 -174068191 - MIR SINE MIR -107 155 93 2486 64 0 0 chr4 28261206 28261517 -174066830 + AluY SINE Alu 1 311 0 407 252 102 118 chr4 28261545 28261791 -174066556 - MIR SINE MIR 0 262 21 313 315 241 5 chr4 28261841 28262044 -174066303 + MIR SINE MIR 1 251 -11 226 217 19 0 chr4 28262166 28262218 -174066129 + MIR SINE MIR 104 155 -58 213 132 0 0 chr4 28262941 28262979 -174065368 + (GA)n Simple_repeat Simple_repeat 1 38 0 299 213 12 25 chr4 28263091 28263171 -174065176 + MLT1L LTR MaLR 6 84 -531 913 230 175 49 chr4 28263191 28263696 -174064651 + MLT2F LTR ERVL 3 660 -3 786 261 182 8 chr4 28263708 28264065 -174064282 + MLT1L LTR MaLR 118 536 -79 2702 165 50 42 chr4 28264071 28264220 -174064127 - MER44D DNA MER2_type -1882 605 459 2193 131 34 22 chr4 28264220 28264578 -174063769 + THE1B LTR MaLR 1 362 -2 2702 165 50 42 chr4 28264578 28264974 -174063373 - MER44D DNA MER2_type -2028 459 1 289 194 16 16 chr4 28264976 28265038 -174063309 + MLT1L LTR MaLR 544 605 -10 286 244 276 6 chr4 28265387 28265543 -174062804 + LTR50 LTR ERVL 17 214 -581 270 171 122 0 chr4 28265921 28266003 -174062344 + LTR33A LTR ERVL 417 508 -15 368 308 65 72 chr4 28266022 28266118 -174062229 - MLT1K LTR MaLR -71 517 422 1633 171 0 59 chr4 28266118 28266300 -174062047 - AluJo SINE Alu -10 302 146 2041 142 0 13 chr4 28266300 28266603 -174061744 - AluSx SINE Alu -13 299 1 1633 171 0 59 chr4 28266603 28266741 -174061606 - AluJo SINE Alu -166 146 1 368 308 65 72 chr4 28266741 28267047 -174061300 - MLT1K LTR MaLR -166 422 118 1405 151 14 5 chr4 28267223 28267442 -174060905 - MSTB LTR MaLR -4 422 202 1936 146 17 14 chr4 28267501 28267815 -174060532 - AluSx SINE Alu 0 312 1 1118 276 50 31 chr4 28268908 28269300 -174059047 - LTR16C LTR ERVL 0 491 87 1768 171 16 68 chr4 28269300 28269685 -174058662 + MLT1A1 LTR MaLR 1 365 0 1118 276 50 31 chr4 28269685 28269773 -174058574 - LTR16C LTR ERVL -404 87 2 332 238 76 52 chr4 28270681 28270853 -174057494 - MIR SINE MIR -75 187 12 358 267 85 23 chr4 28271329 28271505 -174056842 - MIR3 SINE MIR -17 191 5 279 150 0 0 chr4 28271523 28271583 -174056764 + (TG)n Simple_repeat Simple_repeat 2 61 0 2155 116 7 3 chr4 28272047 28272341 -174056006 + AluSx SINE Alu 1 295 -17 549 196 162 17 chr4 28272345 28272524 -174055823 + MLT1K LTR MaLR 261 465 -123 4273 126 172 97 chr4 28272526 28273957 -174054390 - pTR5 LTR ERV1 0 2438 743 977 197 10 15 chr4 28274045 28274248 -174054099 + MIR SINE MIR 37 238 -24 1108 260 25 1 chr4 28274284 28274582 -174053765 - MLT1I LTR MaLR -24 385 41 25 0 0 0 chr4 28274684 28274709 -174053638 + AT_rich Low_complexity Low_complexity 1 25 0 1552 170 21 35 chr4 28274709 28274997 -174053350 - AluJo SINE Alu -24 288 5 1354 201 33 41 chr4 28275301 28275669 -174052678 - LTR16A1 LTR ERVL -91 366 2 556 267 134 43 chr4 28276330 28276562 -174051785 - MIR SINE MIR 0 262 10 251 226 0 0 chr4 28276635 28276688 -174051659 + MLT1J1 LTR MaLR 3 55 -391 2164 120 13 3 chr4 28276912 28277220 -174051127 - AluSq SINE Alu -2 311 1 559 344 13 13 chr4 28278066 28278296 -174050051 + MIR SINE MIR 21 250 -12 357 274 34 51 chr4 28279389 28279506 -174048841 + L2 LINE L2 3126 3240 -32 2393 77 20 3 chr4 28279537 28279836 -174048511 - AluSp SINE Alu -9 304 1 3608 176 52 54 chr4 28280847 28281719 -174046628 + L1MC4 LINE L1 7168 8037 -5 1976 113 8 0 chr4 28281728 28281984 -174046363 + AluSx SINE Alu 1 258 -54 249 33 0 0 chr4 28281988 28282018 -174046329 + (TAA)n Simple_repeat Simple_repeat 1 30 0 189 296 34 34 chr4 28282024 28282112 -174046235 + MIR SINE MIR 35 122 -86 183 204 23 0 chr4 28282350 28282394 -174045953 - MIR SINE MIR -5 257 213 2060 144 0 0 chr4 28282747 28283052 -174045295 + AluSx SINE Alu 1 305 -7 180 305 12 49 chr4 28283434 28283516 -174044831 - MIR SINE MIR -135 127 49 237 291 184 21 chr4 28283874 28284015 -174044332 + MIR SINE MIR 20 183 -79 251 241 0 0 chr4 28285698 28285756 -174042591 - MIR SINE MIR -69 139 82 183 80 0 0 chr4 28287181 28287206 -174041141 + (A)n Simple_repeat Simple_repeat 1 25 0 423 257 35 0 chr4 28287826 28287939 -174040408 - MER117 DNA MER1_type -74 123 7 355 257 64 36 chr4 28288304 28288444 -174039903 + MIR SINE MIR 113 256 -6 973 169 22 0 chr4 28288536 28288719 -174039628 + MER53 DNA DNA 1 187 -2 551 257 46 46 chr4 28288810 28289028 -174039319 + MER112 DNA MER1_type 4 221 -39 1230 206 20 19 chr4 28289034 28289123 -174039224 + MER58B DNA MER1_type 2 89 -2331 1753 180 23 3 chr4 28289123 28289429 -174038918 + AluSx SINE Alu 1 312 0 1230 206 20 19 chr4 28289429 28289722 -174038625 + MER58B DNA MER1_type 89 340 -1 766 212 145 6 chr4 28290466 28290645 -174037702 + MER58A DNA MER1_type 21 224 0 300 300 45 9 chr4 28291703 28291813 -174036534 + MIR SINE MIR 40 153 -55 514 260 6 44 chr4 28291901 28292082 -174036265 + L1ME LINE L1 5502 5675 -446 275 359 11 27 chr4 28292255 28292439 -174035908 - MIR SINE MIR -16 246 66 1419 206 80 58 chr4 28293860 28294312 -174034035 - MLT1C LTR MaLR 0 467 6 182 358 17 17 chr4 28294570 28294690 -174033657 + L2 LINE L2 2583 2702 -612 1620 186 64 59 chr4 28294948 28295404 -174032943 + MLT1C LTR MaLR 6 463 -4 401 325 45 0 chr4 28295420 28295577 -174032770 + MER91A DNA MER1_type 1 164 -32 262 196 0 0 chr4 28295801 28295852 -174032495 + L2 LINE L2 3261 3311 -2 277 184 26 26 chr4 28296921 28296997 -174031350 + MIR SINE MIR 71 146 -116 1982 107 0 52 chr4 28297010 28297300 -174031047 - AluSx SINE Alu -37 275 1 1930 176 19 3 chr4 28298525 28298884 -174029463 + MER47A DNA MER2_type 2 366 0 271 202 45 45 chr4 28298957 28299046 -174029301 - MIR SINE MIR -29 233 145 562 313 22 31 chr4 28299133 28299360 -174028987 - MIR SINE MIR -33 229 5 369 211 137 48 chr4 28299407 28299538 -174028809 - MER57B LTR ERV1 -243 160 42 4042 91 23 0 chr4 28300565 28301126 -174027221 - L1PB2 LINE L1 -4 6147 5574 2015 132 6 26 chr4 28301325 28301636 -174026711 - AluSx SINE Alu -7 305 1 440 293 98 32 chr4 28301915 28302131 -174026216 + MLT1G1 LTR MaLR 83 333 -262 1813 153 13 13 chr4 28302131 28302431 -174025916 + AluJb SINE Alu 9 308 -4 440 293 98 32 chr4 28302431 28302493 -174025854 + MLT1G1 LTR MaLR 333 389 -206 276 172 149 23 chr4 28302563 28302650 -174025697 + MLT1G1 LTR MaLR 498 595 0 219 287 125 37 chr4 28303354 28303490 -174024857 + MIR3 SINE MIR 50 197 -11 4279 137 34 4 chr4 28304064 28304781 -174023566 - L1PB4 LINE L1 -7 6149 5412 558 241 30 30 chr4 28304903 28305036 -174023311 + FLAM_A SINE Alu 1 133 0 189 107 0 0 chr4 28305036 28305064 -174023283 + (GA)n Simple_repeat Simple_repeat 1 28 0 * 300 107 0 67 chr4 28305061 28305136 -174023211 + (GGAA)n Simple_repeat Simple_repeat 4 73 0 730 246 8 90 chr4 28305574 28305830 -174022517 + MIR SINE MIR 7 241 -21 186 43 0 0 chr4 28305868 28305891 -174022456 + (T)n Simple_repeat Simple_repeat 1 23 0 764 303 75 52 chr4 28306102 28306663 -174021684 - L2 LINE L2 -1 3312 2720 203 237 0 51 chr4 28306687 28306746 -174021601 - L2 LINE L2 -15 3257 3202 308 314 76 22 chr4 28306774 28306997 -174021350 - L2 LINE L2 -616 2698 2464 1674 199 28 20 chr4 28306999 28307061 -174021286 + L1M4 LINE L1 903 963 -5579 2399 101 52 3 chr4 28307061 28307408 -174020939 - THE1B LTR MaLR 0 364 1 1674 199 28 20 chr4 28307408 28307741 -174020606 + L1M4 LINE L1 963 1301 -5241 2085 205 80 21 chr4 28307939 28308412 -174019935 - MLT1F1 LTR MaLR 0 567 67 2382 173 33 69 chr4 28309228 28309767 -174018580 + MLT2B1 LTR ERVL 1 520 0 227 341 8 16 chr4 28310376 28310505 -174017842 - L2 LINE L2 -2 3311 3184 304 310 67 50 chr4 28310549 28310788 -174017559 + L2 LINE L2 3003 3245 -68 198 288 34 0 chr4 28312131 28312190 -174016157 - MIR SINE MIR -73 189 129 1174 165 0 30 chr4 28312476 28312676 -174015671 + AluJo SINE Alu 85 278 -34 180 0 0 0 chr4 28312676 28312696 -174015651 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 363 253 79 105 chr4 28312791 28312981 -174015366 + MLT1L LTR MaLR 22 206 -409 1023 277 60 46 chr4 28313216 28313718 -174014629 + MLT1J LTR MaLR 3 511 0 282 231 0 15 chr4 28313771 28313836 -174014511 + MLT1L LTR MaLR 552 615 0 34 24 0 0 chr4 28314536 28314577 -174013770 + AT_rich Low_complexity Low_complexity 1 41 0 2042 156 0 0 chr4 28317026 28317321 -174011026 + AluSx SINE Alu 3 297 -15 588 261 96 10 chr4 28317900 28318099 -174010248 + MIR SINE MIR 33 248 -14 356 336 41 36 chr4 28318173 28318375 -174009972 + MIR SINE MIR 21 221 -27 2173 129 7 0 chr4 28318512 28318814 -174009533 - AluSx SINE Alu -8 304 1 381 22 0 0 chr4 28318820 28318866 -174009481 + (TC)n Simple_repeat Simple_repeat 2 47 0 198 0 0 0 chr4 28318905 28318927 -174009420 + (TC)n Simple_repeat Simple_repeat 2 23 0 245 330 22 0 chr4 28320126 28320217 -174008130 + LTR67 LTR ERVL 458 550 -7 1923 125 37 10 chr4 28321947 28322244 -174006103 - AluSq SINE Alu -8 305 1 230 173 0 19 chr4 28323359 28323368 -174004979 + (TATG)n Simple_repeat Simple_repeat 1 9 -42 2309 94 10 0 chr4 28323368 28323665 -174004682 + AluSq SINE Alu 1 300 -13 230 173 0 19 chr4 28323665 28323707 -174004640 + (TATG)n Simple_repeat Simple_repeat 9 51 0 202 133 0 67 chr4 28323897 28323957 -174004390 + (TATATG)n Simple_repeat Simple_repeat 5 60 0 1700 193 90 10 chr4 28323974 28324374 -174003973 - MER63B DNA MER1_type -1 435 4 2275 67 0 0 chr4 28324581 28324849 -174003498 - AluY SINE Alu -17 294 27 395 299 41 25 chr4 28326827 28327024 -174001323 + MIR SINE MIR 56 255 -7 21 0 0 0 chr4 28327053 28327074 -174001273 + AT_rich Low_complexity Low_complexity 1 21 0 235 203 16 23 chr4 28327114 28327242 -174001105 + (TA)n Simple_repeat Simple_repeat 2 128 0 456 332 32 32 chr4 28328141 28328394 -173999953 + MIR SINE MIR 10 262 0 234 0 0 0 chr4 28329907 28329933 -173998414 + (T)n Simple_repeat Simple_repeat 1 26 0 518 159 9 0 chr4 28330133 28330240 -173998107 + GA-rich Low_complexity Low_complexity 5 112 0 258 347 76 0 chr4 28330592 28330736 -173997611 - MIR SINE MIR -73 189 35 212 276 0 0 chr4 28331062 28331120 -173997227 + T-rich Low_complexity Low_complexity 1 58 0 475 286 161 30 chr4 28331182 28331549 -173996798 + MLT1K LTR MaLR 164 578 -10 936 227 84 0 chr4 28331922 28332125 -173996222 - MER58A DNA MER1_type -1 223 4 6945 116 64 26 chr4 28332225 28333248 -173995099 - Tigger3b DNA MER2_type -1797 1231 155 4335 114 31 1 chr4 28333248 28333607 -173994740 - L1PB1 LINE L1 -1 6150 5762 315 0 0 0 chr4 28333607 28333642 -173994705 + (TA)n Simple_repeat Simple_repeat 2 36 0 4335 114 31 1 chr4 28333642 28333933 -173994414 - L1PB1 LINE L1 -389 5762 5481 6945 116 64 26 chr4 28333933 28334095 -173994252 - Tigger3b DNA MER2_type -2873 155 1 1318 211 55 49 chr4 28334095 28334421 -173993926 - MLT1J LTR MaLR -109 402 75 2273 122 0 0 chr4 28334696 28334992 -173993355 + AluSx SINE Alu 1 296 -16 265 235 112 20 chr4 28335360 28335458 -173992889 - L2 LINE L2 -27 3286 3180 832 267 0 6 chr4 28336235 28336411 -173991936 - LTR16A LTR ERVL -260 190 16 203 338 68 61 chr4 28336821 28336969 -173991378 - L2 LINE L2 -190 3082 2934 616 253 48 11 chr4 28337570 28337756 -173990591 - MIR SINE MIR 0 262 70 2140 138 41 39 chr4 28337869 28338232 -173990115 + THE1B LTR MaLR 1 364 0 287 253 130 50 chr4 28338271 28338463 -173989884 - MIR SINE MIR -56 206 3 359 312 54 5 chr4 28338626 28338812 -173989535 + MIR3 SINE MIR 12 206 -2 2227 112 3 0 chr4 28339035 28339339 -173989008 - AluSx SINE Alu -7 305 1 313 217 70 77 chr4 28340443 28340586 -173987761 - MER112 DNA MER1_type -9 251 110 213 65 0 0 chr4 28340600 28340631 -173987716 + (CA)n Simple_repeat Simple_repeat 2 32 0 933 175 32 16 chr4 28340692 28340881 -173987466 + MLT1D LTR MaLR 6 197 -308 598 261 13 7 chr4 28340889 28341042 -173987305 + MLT1D LTR MaLR 350 503 -2 180 0 0 0 chr4 28341900 28341920 -173986427 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 667 219 22 0 chr4 28342473 28342610 -173985737 + FLAM_C SINE Alu 2 141 -2 1843 177 24 12 chr4 28342654 28342987 -173985360 + MER1B DNA MER1_type 1 337 0 679 208 8 0 chr4 28343523 28343648 -173984699 - MER45A DNA AcHobo -52 126 1 197 231 0 19 chr4 28343809 28343861 -173984486 + MER5A DNA MER1_type 114 164 -25 318 270 40 0 chr4 28344461 28344561 -173983786 - MIR SINE MIR -41 221 118 461 267 18 48 chr4 28344608 28344773 -173983574 - MIR SINE MIR -83 179 20 2097 147 45 17 chr4 28345064 28345418 -173982929 - THE1B LTR MaLR 0 364 1 180 280 20 0 chr4 28345903 28345953 -173982394 - MIR SINE MIR -27 235 185 264 222 19 19 chr4 28346045 28346124 -173982223 - MIR SINE MIR -115 93 14 204 281 66 41 chr4 28346681 28346802 -173981545 + MIR SINE MIR 30 153 -109 611 292 92 77 chr4 28346956 28347476 -173980871 + MLT1K LTR MaLR 39 566 -22 375 246 93 0 chr4 28348371 28348489 -173979858 + MIR SINE MIR 106 234 -28 232 291 13 13 chr4 28349200 28349279 -173979068 + MIR SINE MIR 72 150 -112 722 245 115 36 chr4 28349482 28349735 -173978612 - MLT1K LTR MaLR 0 615 316 351 0 0 0 chr4 28350012 28350051 -173978296 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 484 321 110 5 chr4 28350189 28350398 -173977949 + MIR SINE MIR 15 245 -17 1909 165 18 3 chr4 28350695 28351034 -173977313 - L1MA5 LINE L1 -5 6295 5952 240 35 0 0 chr4 28352028 28352057 -173976290 + (TG)n Simple_repeat Simple_repeat 1 29 0 2068 114 0 0 chr4 28352070 28352334 -173976013 - AluSx SINE Alu -30 282 19 806 259 53 27 chr4 28352437 28352700 -173975647 + L2 LINE L2 2537 2806 -508 607 220 215 16 chr4 28352715 28352901 -173975446 + MLT1G1 LTR MaLR 343 588 -2 1874 167 0 3 chr4 28352915 28353215 -173975132 + AluJb SINE Alu 1 299 -13 2213 131 3 0 chr4 28353536 28353842 -173974505 - AluSx SINE Alu -5 307 1 516 301 61 34 chr4 28354225 28354521 -173973826 - L3 LINE CR1 -636 941 638 1946 212 18 20 chr4 28355142 28355206 -173973141 + L1M4 LINE L1 4787 4850 -1296 1709 189 3 31 chr4 28355206 28355523 -173972824 - AluJb SINE Alu -4 308 1 1946 212 18 20 chr4 28355523 28355907 -173972440 + L1M4 LINE L1 4850 5234 -912 186 261 52 78 chr4 28355907 28356022 -173972325 - L2 LINE L2 -89 3224 3113 348 308 37 9 chr4 28356151 28356357 -173971990 - L2 LINE L2 -317 2996 2782 486 231 50 31 chr4 28356430 28356590 -173971757 - LTR67 LTR ERVL 0 557 395 444 314 0 8 chr4 28356770 28356891 -173971456 - LTR67 LTR ERVL -391 166 47 808 81 18 0 chr4 28356895 28357006 -173971341 - AluY SINE Alu -10 301 189 750 306 77 38 chr4 28357070 28357169 -173971178 - L2 LINE L2 -660 2654 2560 803 191 73 11 chr4 28357169 28357347 -173971000 + MER5A DNA MER1_type 1 189 0 750 306 77 38 chr4 28357347 28357910 -173970437 - L2 LINE L2 -754 2560 1966 233 318 68 23 chr4 28358466 28358598 -173969749 + MIR3 SINE MIR 11 148 -60 1887 168 115 6 chr4 28358734 28359091 -173969256 + MSTD LTR MaLR 1 396 0 194 294 25 34 chr4 28359560 28359679 -173968668 - MIR SINE MIR -65 143 26 352 297 0 0 chr4 28359733 28359824 -173968523 - MIR SINE MIR -5 257 167 * 447 268 176 0 chr4 28359821 28359963 -173968384 + MIR SINE MIR 77 243 -19 278 336 6 0 chr4 28360862 28360976 -173967371 - MIR SINE MIR -55 153 41 270 242 15 0 chr4 28361654 28361720 -173966627 + MLT1I LTR MaLR 327 393 -16 180 318 0 0 chr4 28361734 28361778 -173966569 - MIR SINE MIR -161 101 58 479 291 143 14 chr4 28361788 28362011 -173966336 - MIR SINE MIR -9 253 2 5604 114 28 12 chr4 28362201 28363048 -173965299 - Tigger4(Zombi) DNA MER2_type 0 2731 1871 512 111 14 0 chr4 28363047 28363119 -173965228 - Tigger4(Zombi) DNA MER2_type -2587 144 72 * 934 78 0 0 chr4 28363119 28363234 -173965113 + AluSg/x SINE Alu 176 290 -20 334 190 0 0 chr4 28363234 28363292 -173965055 - Tigger4(Zombi) DNA MER2_type -2673 58 1 479 307 84 31 chr4 28363465 28363690 -173964657 + MIR SINE MIR 20 256 -6 1617 206 130 3 chr4 28363894 28364272 -173964075 - MSTB LTR MaLR 0 426 1 2247 96 0 0 chr4 28364711 28364992 -173963355 - AluSx SINE Alu -12 300 20 246 337 122 5 chr4 28365283 28365488 -173962859 + MIR SINE MIR 34 262 0 326 265 169 7 chr4 28366024 28366160 -173962187 + MIR SINE MIR 28 185 -77 2233 129 0 0 chr4 28366308 28366617 -173961730 - AluSx SINE Alu -3 309 1 195 184 0 0 chr4 28366674 28366712 -173961635 + (TA)n Simple_repeat Simple_repeat 2 39 0 697 263 63 70 chr4 28366896 28367227 -173961120 + MLT1H LTR MaLR 212 540 -9 450 53 0 0 chr4 28368060 28368117 -173960230 + (TC)n Simple_repeat Simple_repeat 1 57 0 291 289 33 0 chr4 28368338 28368428 -173959919 - MIR SINE MIR -86 176 84 247 254 14 28 chr4 28368744 28368815 -173959532 + MER103 DNA DNA 64 133 -33 2505 68 0 0 chr4 28369057 28369351 -173958996 - AluY SINE Alu -17 294 1 599 299 39 19 chr4 28369357 28369564 -173958783 - MLT1J LTR MaLR -292 219 9 728 248 78 14 chr4 28369643 28369861 -173958486 - MLT1I LTR MaLR 0 409 178 1237 238 41 33 chr4 28370156 28370527 -173957820 + MLT1H LTR MaLR 90 549 0 408 239 172 75 chr4 28370527 28370771 -173957576 - LTR67 LTR ERVL -46 511 242 424 214 60 119 chr4 28371054 28371255 -173957092 - MLT1L LTR MaLR -421 194 6 487 259 18 0 chr4 28371376 28371488 -173956859 + MER81 DNA DNA 1 114 0 938 234 36 0 chr4 28371660 28371882 -173956465 - MIR SINE MIR -32 230 1 250 192 29 48 chr4 28373387 28373491 -173954856 + (CATATA)n Simple_repeat Simple_repeat 3 104 0 12063 25 2 0 chr4 28374849 28377010 -173951337 - L1PA3 LINE L1 0 6155 3993 19308 50 1 3 chr4 28377010 28379357 -173948990 - L1PA3 LINE L1 -3800 2346 5 1844 169 3 13 chr4 28379392 28379705 -173948642 + AluJb SINE Alu 1 310 -2 338 366 83 24 chr4 28379931 28380136 -173948211 + MIR SINE MIR 46 262 0 849 166 43 7 chr4 28380549 28380688 -173947659 + FRAM SINE Alu 1 138 -38 268 204 48 29 chr4 28380868 28380971 -173947376 - MIR3 SINE MIR -23 185 81 22 0 0 0 chr4 28381710 28381732 -173946615 + AT_rich Low_complexity Low_complexity 1 22 0 314 224 71 12 chr4 28381772 28381857 -173946490 + MIR SINE MIR 146 235 -27 480 281 46 13 chr4 28381892 28382045 -173946302 - MIR SINE MIR -101 161 4 2465 97 0 0 chr4 28382261 28382569 -173945778 - AluSx SINE Alu -4 308 1 1409 267 115 18 chr4 28432861 28433358 -173894989 + L2 LINE L2 2467 3008 -305 330 211 164 19 chr4 28433385 28433489 -173894858 - L1MC4 LINE L1 -1069 6973 6855 22 0 0 0 chr4 28433743 28433765 -173894582 + AT_rich Low_complexity Low_complexity 1 22 0 192 188 0 0 chr4 28433854 28433886 -173894461 + L2 LINE L2 3268 3299 -14 243 0 0 0 chr4 28436081 28436108 -173892239 + (TG)n Simple_repeat Simple_repeat 2 28 0 259 329 12 0 chr4 28436178 28436260 -173892087 - L2 LINE L2 -218 3054 2972 708 160 11 48 chr4 28436964 28437152 -173891195 + L1 LINE L1 2859 3039 -3107 4262 241 91 5 chr4 28437162 28438200 -173890147 + L1PA13 LINE L1 1 1127 -5660 338 119 0 0 chr4 28438200 28438259 -173890088 + L1PA13 LINE L1 1648 1706 -5081 404 251 63 63 chr4 28438359 28438550 -173889797 + MER112 DNA MER1_type 70 260 0 337 167 225 0 chr4 28439061 28439171 -173889176 + MIR SINE MIR 50 189 -73 4698 144 8 13 chr4 28439511 28440291 -173888056 + THE1B-int LTR MaLR 568 1343 -237 1648 113 0 4 chr4 28440291 28440530 -173887817 + THE1B LTR MaLR 127 364 0 987 218 0 0 chr4 28440533 28440739 -173887608 - L1P LINE L1 -3347 2799 2594 6020 139 36 6 chr4 28440839 28441930 -173886417 - Tigger1 DNA MER2_type -531 1887 765 398 95 16 0 chr4 28442045 28442108 -173886239 - MER31A LTR ERV1 -420 65 2 1422 111 10 14 chr4 28442867 28443074 -173885273 - AluSg/x SINE Alu -14 298 93 391 313 89 18 chr4 28443175 28443399 -173884948 - L1MEc LINE L1 -4246 2150 1911 21 36 0 0 chr4 28444073 28444101 -173884246 + AT_rich Low_complexity Low_complexity 1 28 0 185 344 0 0 chr4 28444181 28444242 -173884105 + L2 LINE L2 3247 3307 -6 4304 40 8 0 chr4 28444377 28445158 -173883189 - L1P2 LINE L1 -354 5801 5017 3278 50 5 0 chr4 28445154 28445592 -173882755 + L1P LINE L1 3666 4105 -2041 * 5926 131 19 20 chr4 28445692 28446710 -173881637 + MER11C LTR ERVK 55 1071 0 1937 109 0 4 chr4 28446710 28446986 -173881361 + HERVK11 LTR ERVK 1 275 -7678 222 37 0 0 chr4 28447090 28447117 -173881230 + (TG)n Simple_repeat Simple_repeat 2 28 0 2172 160 75 55 chr4 28448478 28448984 -173879363 + LTR44 LTR ERV1 2 517 -2 321 318 16 0 chr4 28449686 28449815 -173878532 + L1ME2 LINE L1 5535 5665 -2330 1087 265 106 26 chr4 28449830 28450320 -173878027 - MLT1H1 LTR MaLR -15 540 12 1255 193 105 55 chr4 28450332 28450789 -173877558 + L1ME2 LINE L1 5676 6155 -9 228 289 167 18 chr4 28451653 28451767 -173876580 + L2 LINE L2 3142 3272 0 4342 75 0 61 chr4 28452626 28453352 -173874995 + MER11A LTR ERVK 439 1261 -5 654 13 0 0 chr4 28453354 28453429 -173874918 + (TA)n Simple_repeat Simple_repeat 1 75 0 985 248 11 7 chr4 28453433 28453703 -173874644 - AluSx SINE Alu -1 311 41 312 314 51 17 chr4 28453928 28454046 -173874301 - MIR SINE MIR -23 239 118 382 335 79 29 chr4 28455426 28455744 -173872603 - L2 LINE L2 -196 3076 2742 209 369 41 16 chr4 28455773 28455895 -173872452 - L2 LINE L2 -655 2659 2535 344 273 63 42 chr4 28455964 28456107 -173872240 - MER5B DNA MER1_type -19 159 14 1152 304 54 25 chr4 28456129 28456612 -173871735 + L2 LINE L2 2146 2642 -672 1346 123 0 0 chr4 28456619 28456798 -173871549 - AluSg/x SINE Alu -15 297 119 245 358 20 13 chr4 28457055 28457206 -173871141 + L1MEd LINE L1 595 746 -5373 498 276 77 35 chr4 28457466 28457752 -173870595 + L1MEd LINE L1 958 1255 -4864 4492 28 1 1 chr4 28458136 28458899 -173869448 - L1P2 LINE L1 -570 5584 4822 * 7962 33 0 0 chr4 28458898 28459903 -173868444 + L1P LINE L1 4346 5350 -796 278 22 0 67 chr4 28460027 28460072 -173868275 + MADE1 DNA Mariner 2 43 -37 2082 114 0 4 chr4 28460083 28460364 -173867983 - AluSx SINE Alu -32 280 1 497 179 0 0 chr4 28460364 28460448 -173867899 - MLT1A1 LTR MaLR -281 84 1 320 196 0 0 chr4 28460628 28460684 -173867663 - L2 LINE L2 -4 3309 3254 32 57 0 0 chr4 28461975 28462028 -173866319 + AT_rich Low_complexity Low_complexity 1 53 0 534 272 0 0 chr4 28462607 28462769 -173865578 + (TATATG)n Simple_repeat Simple_repeat 6 167 0 301 333 0 0 chr4 28462775 28462865 -173865482 + L1MC4 LINE L1 6614 6703 -1339 46 67 0 33 chr4 28462923 28462978 -173865369 + AT_rich Low_complexity Low_complexity 1 56 -89 1855 135 14 35 chr4 28462978 28463266 -173865081 - AluSx SINE Alu -14 298 17 46 67 0 33 chr4 28463266 28463360 -173864987 + AT_rich Low_complexity Low_complexity 56 145 0 877 169 33 16 chr4 28463364 28463547 -173864800 - L1MB7 LINE L1 -29 6155 5970 335 149 15 0 chr4 28463554 28463621 -173864726 - Alu SINE Alu 0 302 235 253 191 0 0 chr4 28464162 28464209 -173864138 - L2 LINE L2 -1 3312 3266 2010 214 14 40 chr4 28465756 28466275 -173862072 + MLT1D LTR MaLR 1 505 0 213 299 124 55 chr4 28466341 28466542 -173861805 - MIR SINE MIR -37 225 11 1076 281 54 20 chr4 28466594 28467035 -173861312 + LTR68 LTR ERV1 1 456 -284 2182 110 0 0 chr4 28467137 28467429 -173860918 + AluSp SINE Alu 21 312 -1 198 0 0 0 chr4 28467781 28467803 -173860544 + (A)n Simple_repeat Simple_repeat 1 22 0 2214 90 0 4 chr4 28468362 28468670 -173859677 + AluSq SINE Alu 5 311 0 307 114 0 0 chr4 28468741 28468785 -173859562 + MSTA LTR MaLR 334 377 -51 285 75 0 0 chr4 28469226 28469266 -173859081 + (GA)n Simple_repeat Simple_repeat 1 40 0 346 280 34 34 chr4 28469304 28469422 -173858925 - L1ME3 LINE L1 -66 6096 5979 2793 186 59 9 chr4 28469425 28469952 -173858395 - MER68 LTR ERV1 0 562 10 330 230 72 86 chr4 28469957 28470001 -173858346 - L1ME3 LINE L1 -181 5981 5938 2284 94 10 3 chr4 28470001 28470298 -173858049 - AluSx SINE Alu -13 299 1 330 230 72 86 chr4 28470298 28470392 -173857955 - L1ME3 LINE L1 -224 5938 5845 407 281 163 10 chr4 28470503 28470699 -173857648 - MIR SINE MIR -3 259 34 1405 178 122 21 chr4 28470790 28471077 -173857270 + MLT1D LTR MaLR 3 318 -187 5253 129 1 9 chr4 28471787 28472585 -173855762 + L1PA14 LINE L1 5370 6161 0 2240 157 23 3 chr4 28472620 28472970 -173855377 - MLT1A1 LTR MaLR -8 357 1 909 136 0 0 chr4 28473145 28473270 -173855077 + THE1B LTR MaLR 89 213 -151 245 184 20 0 chr4 28473370 28473419 -173854928 - MER53 DNA DNA -137 52 3 194 333 120 40 chr4 28473420 28473570 -173854777 - MIR SINE MIR -78 184 23 2060 151 0 3 chr4 28474497 28474871 -173853476 + AluSq SINE Alu 1 373 0 451 206 50 35 chr4 28474922 28475063 -173853284 - L1ME4a LINE L1 0 6121 5979 396 254 103 47 chr4 28475096 28475309 -173853038 - L1ME4a LINE L1 -207 5914 5690 1408 169 122 21 chr4 28475557 28475836 -173852511 + AluJo SINE Alu 1 307 -5 263 150 0 0 chr4 28476129 28476169 -173852178 + MER53 DNA DNA 150 189 0 1480 146 54 44 chr4 28477721 28478016 -173850331 + AluJo SINE Alu 1 298 -14 231 135 0 0 chr4 28478745 28478782 -173849565 - L2 LINE L2 -16 3297 3261 894 188 17 153 chr4 28478950 28479302 -173849045 - LTR37A LTR ERV1 -12 414 111 640 238 92 0 chr4 28479703 28479867 -173848480 + MIR SINE MIR 81 259 -3 2258 93 10 0 chr4 28480012 28480302 -173848045 - AluSc SINE Alu -16 293 1 845 96 0 0 chr4 28480533 28480637 -173847710 - AluSg/x SINE Alu -16 296 193 254 135 0 0 chr4 28480668 28480705 -173847642 + MER21A LTR ERV1 162 198 -733 * 2480 180 102 118 chr4 28480681 28481474 -173846873 + MER21A LTR ERV1 131 910 -21 1011 336 43 12 chr4 28481521 28482110 -173846237 - L2 LINE L2 -312 3001 2392 674 144 0 0 chr4 28482116 28482213 -173846134 + FLAM_C SINE Alu 22 118 -25 583 212 15 17 chr4 28482227 28482577 -173845770 + GA-rich Low_complexity Low_complexity 1 349 0 186 43 0 0 chr4 28482582 28482605 -173845742 + (GGGA)n Simple_repeat Simple_repeat 2 24 0 204 139 0 0 chr4 28482879 28482915 -173845432 - MIR SINE MIR -1 261 226 307 289 102 16 chr4 28482973 28483101 -173845246 + MIR SINE MIR 69 207 -55 698 283 17 71 chr4 28484686 28484897 -173843450 + L2 LINE L2 2960 3147 -166 2320 78 4 0 chr4 28484897 28485212 -173843135 - AluSx SINE Alu 0 316 1 698 283 17 71 chr4 28485212 28485352 -173842995 + L2 LINE L2 3147 3293 -20 215 209 0 0 chr4 28485533 28485576 -173842771 + MIR SINE MIR 50 92 -116 1059 169 47 67 chr4 28486003 28486257 -173842090 - Tigger3(Golem) DNA MER2_type -2780 249 1 2322 98 0 7 chr4 28486629 28486934 -173841413 + AluSx SINE Alu 1 303 -9 1157 138 0 0 chr4 28486934 28487101 -173841246 + AluSg/x SINE Alu 134 300 -12 1576 165 88 97 chr4 28487101 28487567 -173840780 - MER31B LTR ERV1 -4 462 1 2271 110 0 3 chr4 28487761 28488062 -173840285 + AluSx SINE Alu 1 300 -12 2140 120 47 0 chr4 28488678 28488977 -173839370 + AluSq SINE Alu 1 313 0 207 0 0 0 chr4 28489093 28489116 -173839231 + (A)n Simple_repeat Simple_repeat 1 23 0 936 219 0 0 chr4 28489131 28489327 -173839020 + MIR SINE MIR 57 252 -10 351 78 0 0 chr4 28490048 28490099 -173838248 + (TG)n Simple_repeat Simple_repeat 1 51 0 1638 184 0 35 chr4 28491813 28492129 -173836218 + AluJo SINE Alu 1 305 -7 189 0 0 0 chr4 28492135 28492156 -173836191 + (TG)n Simple_repeat Simple_repeat 2 22 0 324 48 0 0 chr4 28492158 28492200 -173836147 + (GA)n Simple_repeat Simple_repeat 1 42 0 2319 82 14 0 chr4 28492527 28492821 -173835526 - AluSp SINE Alu -15 298 1 2238 156 22 27 chr4 28492821 28493064 -173835283 - L1MB4 LINE L1 -118 6062 5820 2201 123 3 3 chr4 28493064 28493366 -173834981 - AluSx SINE Alu -9 303 2 2238 156 22 27 chr4 28493366 28493532 -173834815 - L1MB4 LINE L1 -360 5820 5655 286 274 39 0 chr4 28493538 28493640 -173834707 - L1MC4a LINE L1 -1922 5886 5781 1930 134 23 10 chr4 28494089 28494388 -173833959 + AluSx SINE Alu 1 303 -9 1715 108 0 0 chr4 28494389 28494611 -173833736 + AluSg/x SINE Alu 87 308 -2 746 160 26 39 chr4 28494816 28494972 -173833375 - L1PB4 LINE L1 -1 6155 6002 1542 197 34 3 chr4 28495049 28495343 -173833004 + AluJb SINE Alu 1 303 -9 230 193 18 18 chr4 28495938 28495995 -173832352 + A-rich Low_complexity Low_complexity 3 59 0 2484 29 0 0 chr4 28496039 28496317 -173832030 - AluYa5 SINE Alu -4 307 30 1856 157 16 23 chr4 28497035 28497340 -173831007 - AluJo SINE Alu -4 308 6 1003 167 34 12 chr4 28497672 28497871 -173830476 + L1MA9 LINE L1 5592 5793 -519 2133 114 0 3 chr4 28497975 28498265 -173830082 + AluSx SINE Alu 1 289 -23 2768 168 12 8 chr4 28498270 28498782 -173829565 + L1MA9 LINE L1 5799 6312 0 2214 115 3 0 chr4 28498820 28499115 -173829232 + AluSx SINE Alu 1 296 -16 1609 161 67 30 chr4 28500349 28500648 -173827699 - AluJo SINE Alu -2 310 1 1402 210 40 0 chr4 28501265 28501597 -173826750 - AluSx SINE Alu 0 344 1 21 0 0 0 chr4 28501670 28501691 -173826656 + AT_rich Low_complexity Low_complexity 1 21 0 878 138 0 7 chr4 28501804 28501956 -173826391 + (TCCC)n Simple_repeat Simple_repeat 4 154 0 1365 61 0 0 chr4 28502748 28502928 -173825419 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 425 147 20 98 chr4 28503588 28503690 -173824657 - L1MB7 LINE L1 -20 6164 6071 398 273 29 14 chr4 28503706 28503845 -173824502 - L2 LINE L2 -19 3294 3154 2050 166 144 7 chr4 28503852 28504263 -173824084 + MLT1C LTR MaLR 1 467 0 596 171 21 50 chr4 28504386 28504526 -173823821 + MER21A LTR ERV1 8 143 -788 362 123 31 0 chr4 28504638 28504703 -173823644 + G-rich Low_complexity Low_complexity 5 71 0 711 105 24 0 chr4 28504709 28504833 -173823514 + GA-rich Low_complexity Low_complexity 4 130 0 192 250 44 0 chr4 28504847 28504915 -173823432 + MER5A DNA MER1_type 54 124 -65 479 164 86 86 chr4 28505038 28505178 -173823169 - LTR48 LTR ERV1 -3 784 645 1197 140 16 5 chr4 28505196 28505389 -173822958 + MER44D DNA MER2_type 8 472 -137 777 168 0 22 chr4 28505389 28505526 -173822821 - FLAM_A SINE Alu -8 134 1 803 159 29 7 chr4 28505526 28505664 -173822683 + MER44D DNA MER2_type 565 705 0 561 220 90 32 chr4 28505664 28505968 -173822379 - LTR48B LTR ERV1 -141 616 128 349 307 9 26 chr4 28505941 28506055 -173822292 - MER34 LTR ERV1 -430 112 1 * 1674 165 18 32 chr4 28506606 28506891 -173821456 + AluJo SINE Alu 1 281 -31 183 27 54 27 chr4 28506899 28506936 -173821411 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 491 247 127 60 chr4 28508313 28508596 -173819751 + L2 LINE L2 3012 3313 0 1583 198 3 23 chr4 28508667 28508975 -173819372 + AluJo SINE Alu 1 302 -10 2020 147 6 10 chr4 28508975 28509288 -173819059 + AluSx SINE Alu 1 312 0 389 242 21 0 chr4 28509421 28509516 -173818831 - MIR SINE MIR -108 154 58 252 250 0 0 chr4 28509608 28509668 -173818679 + MIR SINE MIR 41 100 -108 681 95 11 0 chr4 28509940 28510059 -173818288 - AluSc SINE Alu 0 305 186 351 327 87 30 chr4 28510169 28510437 -173817910 + L2 LINE L2 2766 3047 -266 1627 167 10 42 chr4 28510592 28510903 -173817444 - AluSx SINE Alu -11 301 1 2800 20 0 0 chr4 28511024 28511328 -173817019 + AluY SINE Alu 1 304 -7 2680 52 0 0 chr4 28511422 28511732 -173816615 + AluY SINE Alu 1 310 -1 348 274 85 26 chr4 28511739 28511892 -173816455 + MIR3 SINE MIR 47 208 0 309 270 135 16 chr4 28512719 28512845 -173815502 - MIR3 SINE MIR -62 146 6 295 327 50 0 chr4 28512992 28513093 -173815254 - MIR SINE MIR 0 262 157 381 237 64 32 chr4 28513093 28513249 -173815098 - MIR SINE MIR 0 262 102 2147 126 3 0 chr4 28513250 28513543 -173814804 + AluSp SINE Alu 2 295 -18 7203 136 20 10 chr4 28514463 28514684 -173813663 - HSMAR2 DNA Mariner 0 1302 1085 2167 100 4 4 chr4 28514684 28514999 -173813348 - AluSc SINE Alu 0 315 1 7203 136 20 10 chr4 28514999 28515898 -173812449 - HSMAR2 DNA Mariner -217 1085 170 326 190 0 38 chr4 28516207 28516286 -173812061 + MIR SINE MIR 84 159 -103 1894 199 111 11 chr4 28516286 28516729 -173811618 - MLT1F LTR MaLR 0 542 56 275 61 0 0 chr4 28517152 28517185 -173811162 + AluY SINE Alu 59 91 -210 357 211 32 42 chr4 28517344 28517439 -173810908 - MER103 DNA DNA -6 160 67 333 309 52 7 chr4 28517612 28517748 -173810599 + MIR SINE MIR 50 191 -71 186 324 27 0 chr4 28517780 28517854 -173810493 + MIR SINE MIR 19 94 -168 671 214 0 36 chr4 28517854 28517994 -173810353 - FLAM_C SINE Alu -7 136 2 2035 162 0 0 chr4 28518036 28518339 -173810008 - AluJb SINE Alu -9 303 1 373 274 30 42 chr4 28518343 28518511 -173809836 + MIR SINE MIR 96 261 -1 243 256 70 12 chr4 28518524 28518610 -173809737 - MIR SINE MIR -166 96 6 278 177 0 16 chr4 28519673 28519735 -173808612 + GA-rich Low_complexity Low_complexity 3 63 0 822 206 56 6 chr4 28520066 28520246 -173808101 + MER53 DNA DNA 1 189 0 1271 135 42 9 chr4 28520986 28521201 -173807146 + AluJo SINE Alu 87 308 -4 348 281 7 65 chr4 28521683 28521822 -173806525 - L2 LINE L2 0 3313 3183 2328 68 3 3 chr4 28521839 28522150 -173806197 + AluY SINE Alu 1 311 0 4129 203 49 37 chr4 28522159 28522624 -173805723 + Charlie1a DNA MER1_type 12 470 -2291 2158 94 0 10 chr4 28522624 28522932 -173805415 + AluSp SINE Alu 7 311 -2 4129 203 49 37 chr4 28522932 28523486 -173804861 + Charlie1a DNA MER1_type 470 1046 -1715 1656 171 3 19 chr4 28523486 28523795 -173804552 + AluJb SINE Alu 1 304 -8 4129 203 49 37 chr4 28523795 28523818 -173804529 + Charlie1a DNA MER1_type 1046 1067 -388 226 244 98 0 chr4 28523825 28523907 -173804440 + L1MC4 LINE L1 6614 6703 -1339 404 296 12 0 chr4 28523907 28524076 -173804271 + (TATATG)n Simple_repeat Simple_repeat 3 173 0 3466 215 40 6 chr4 28524177 28525020 -173803327 - L1M4 LINE L1 -966 5180 4309 297 186 51 0 chr4 28525020 28525079 -173803268 + Charlie1a DNA MER1_type 1394 1455 0 183 361 48 0 chr4 28525305 28525388 -173802959 + L2 LINE L2 3143 3229 -43 762 105 19 0 chr4 28525597 28525702 -173802645 - AluJb SINE Alu -11 301 195 570 323 136 19 chr4 28525702 28526032 -173802315 - L1M4 LINE L1 -1371 4775 4396 2109 90 3 30 chr4 28526032 28526333 -173802014 - AluSp SINE Alu -20 293 1 570 323 136 19 chr4 28526333 28526370 -173801977 - L1M4 LINE L1 -1750 4396 4365 362 274 35 22 chr4 28526504 28526664 -173801683 - L1MC4 LINE L1 -1336 6706 6589 315 311 0 11 chr4 28526590 28526680 -173801667 + L1MC4 LINE L1 6615 6703 -1339 * 252 0 0 0 chr4 28526781 28526809 -173801538 + (T)n Simple_repeat Simple_repeat 1 28 0 1274 266 120 12 chr4 28526963 28527814 -173800533 - L2 LINE L2 -3 3310 2356 306 50 0 0 chr4 28528065 28528105 -173800242 + (CA)n Simple_repeat Simple_repeat 2 41 0 207 0 0 0 chr4 28528594 28528617 -173799730 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2305 63 7 3 chr4 28528672 28528972 -173799375 + AluY SINE Alu 2 302 -9 265 240 10 19 chr4 28529342 28529446 -173798901 + (CCCCG)n Simple_repeat Simple_repeat 1 103 0 206 311 40 0 chr4 28530392 28530466 -173797881 + L2 LINE L2 3195 3271 -1 244 252 0 37 chr4 28531105 28531265 -173797082 + (CGG)n Simple_repeat Simple_repeat 1 154 0 23 0 0 0 chr4 28532038 28532061 -173796286 + GC_rich Low_complexity Low_complexity 1 23 0 202 208 42 0 chr4 28532588 28532636 -173795711 + (TA)n Simple_repeat Simple_repeat 1 50 0 2407 53 0 0 chr4 28533262 28533563 -173794784 + AluY SINE Alu 1 301 -10 23 0 0 0 chr4 28533591 28533614 -173794733 + AT_rich Low_complexity Low_complexity 1 23 0 332 255 10 39 chr4 28533825 28533927 -173794420 + MIR SINE MIR 59 157 -105 503 271 0 23 chr4 28534114 28534243 -173794104 + L2 LINE L2 3188 3313 0 581 273 70 66 chr4 28534502 28534569 -173793778 + MIR SINE MIR 1 66 -196 2195 94 0 22 chr4 28534569 28534887 -173793460 + AluY SINE Alu 1 311 0 581 273 70 66 chr4 28534887 28535061 -173793286 + MIR SINE MIR 66 243 -19 282 292 62 22 chr4 28535112 28535220 -173793127 - MIR SINE MIR -82 126 15 204 238 0 0 chr4 28536035 28536077 -173792270 + (CAA)n Simple_repeat Simple_repeat 3 44 0 185 268 188 27 chr4 28536478 28536590 -173791757 - MIR3 SINE MIR -50 158 29 189 265 29 44 chr4 28536716 28536784 -173791563 - L2 LINE L2 -10 3262 3196 374 294 51 89 chr4 28537539 28537725 -173790622 + L2 LINE L2 2550 2721 -593 1654 167 0 34 chr4 28537725 28538018 -173790329 - AluJb SINE Alu -29 283 1 374 294 51 89 chr4 28538018 28538147 -173790200 + L2 LINE L2 2721 2853 -461 1115 231 113 54 chr4 28538318 28538759 -173789588 + MLT1C LTR MaLR 1 467 0 353 338 78 22 chr4 28539796 28540164 -173788183 + L2 LINE L2 2638 3020 -252 412 249 333 34 chr4 28540520 28540697 -173787650 - MIR SINE MIR -1 261 32 261 283 66 66 chr4 28540766 28540872 -173787475 + L2 LINE L2 3075 3180 -92 1384 156 9 4 chr4 28541208 28541433 -173786914 + AluJo SINE Alu 1 226 -86 427 173 74 0 chr4 28541442 28541523 -173786824 + L1MB8 LINE L1 5739 5825 -353 422 138 0 0 chr4 28541523 28541581 -173786766 + AluJo SINE Alu 228 285 -27 2256 97 0 3 chr4 28541704 28542013 -173786334 - AluSg SINE Alu -2 308 1 214 29 57 0 chr4 28542111 28542146 -173786201 + (GA)n Simple_repeat Simple_repeat 2 38 0 2187 204 5 7 chr4 28542194 28542625 -173785722 + L1MB8 LINE L1 5638 6067 -111 208 333 208 24 chr4 28542628 28542796 -173785551 - MIR SINE MIR -61 201 3 205 62 0 31 chr4 28543417 28543449 -173784898 + MIR SINE MIR 124 154 -108 270 160 0 0 chr4 28543917 28543967 -173784380 + G-rich Low_complexity Low_complexity 5 54 0 209 351 0 43 chr4 28543996 28544090 -173784257 - MIR SINE MIR -13 249 160 2350 61 13 16 chr4 28544090 28544403 -173783944 + AluSp SINE Alu 1 312 -1 476 221 179 7 chr4 28544418 28544563 -173783784 + L2 LINE L2 3131 3300 -13 855 266 60 20 chr4 28544630 28544882 -173783465 - MIR SINE MIR 0 262 1 1008 121 33 22 chr4 28545011 28545193 -173783154 - L1MB3 LINE L1 -1 6182 5999 1490 106 46 0 chr4 28545275 28545492 -173782855 + AluY SINE Alu 1 227 -84 867 123 0 7 chr4 28545834 28545972 -173782375 + L1MB7 LINE L1 6029 6165 -19 439 221 145 23 chr4 28546365 28546496 -173781851 - MIR SINE MIR -74 188 42 1487 186 41 14 chr4 28546498 28546793 -173781554 + AluJb SINE Alu 1 303 -9 249 338 35 95 chr4 28546862 28547093 -173781254 + L2 LINE L2 3006 3222 -50 210 37 0 0 chr4 28547116 28547143 -173781204 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 951 291 85 6 chr4 28548018 28548358 -173779989 + L2 LINE L2 1888 2254 -1060 424 196 28 56 chr4 28548363 28548470 -173779877 - L2 LINE L2 -777 2537 2434 368 191 43 21 chr4 28548484 28548578 -173779769 + L2 LINE L2 2291 2386 -928 1681 154 13 31 chr4 28548684 28549002 -173779345 + AluSx SINE Alu 1 312 0 503 141 11 0 chr4 28549002 28549094 -173779253 + GA-rich Low_complexity Low_complexity 4 96 0 902 316 73 30 chr4 28549104 28549695 -173778652 + L2 LINE L2 2552 3313 0 246 341 11 11 chr4 28549906 28549997 -173778350 + MIR SINE MIR 33 123 -85 1846 118 14 21 chr4 28550022 28550302 -173778045 - AluJb SINE Alu -34 278 1 407 289 102 0 chr4 28550756 28550884 -173777463 + MIR SINE MIR 112 252 -10 329 132 264 28 chr4 28551548 28551645 -173776702 + AluJo/FLAM SINE Alu 2 127 -175 2034 149 0 0 chr4 28551645 28551947 -173776400 - AluSx SINE Alu -10 302 1 402 309 7 22 chr4 28553635 28553774 -173774573 - L2 LINE L2 -13 3300 3164 291 355 90 19 chr4 28554000 28554155 -173774192 - MIR SINE MIR -48 214 49 797 262 9 36 chr4 28554159 28554380 -173773967 - MIR SINE MIR 0 262 48 192 274 85 92 chr4 28554836 28554989 -173773358 + L2 LINE L2 3121 3272 0 318 236 79 63 chr4 28555105 28555232 -173773115 + MER63 DNA MER1_type 6 760 -76 253 306 14 0 chr4 28555230 28555302 -173773045 + MER63 DNA MER1_type 983 1055 -5 * 384 169 0 0 chr4 28555590 28555667 -173772680 + CT-rich Low_complexity Low_complexity 2 78 0 1300 112 6 0 chr4 28555768 28555946 -173772401 - AluSc SINE Alu -130 179 1 1934 135 10 0 chr4 28556467 28556764 -173771583 - AluSx SINE Alu -8 304 5 2281 98 0 0 chr4 28556861 28557157 -173771190 - AluSg SINE Alu -14 296 1 364 194 0 0 chr4 28557341 28557413 -173770934 - MLT1F1 LTR MaLR -4 563 492 234 0 0 0 chr4 28557682 28557708 -173770639 + (A)n Simple_repeat Simple_repeat 1 26 0 877 130 80 31 chr4 28557910 28558072 -173770275 + AluJo SINE Alu 79 248 -64 349 175 0 16 chr4 28558072 28558135 -173770212 + AluJo SINE Alu 225 286 -16 1532 176 26 7 chr4 28558225 28558531 -173769816 + AluJo SINE Alu 1 312 0 1243 132 5 5 chr4 28558817 28559022 -173769325 - AluSg/x SINE Alu -13 299 95 694 120 8 32 chr4 28559123 28559248 -173769099 - HSMAR2 DNA Mariner -1173 129 8 191 275 0 0 chr4 28560154 28560194 -173768153 - MIR SINE MIR -109 153 114 1855 159 3 13 chr4 28561012 28561327 -173767020 - AluJb SINE Alu 0 312 1 699 210 0 0 chr4 28561332 28561456 -173766891 - FLAM_A SINE Alu -9 124 1 512 349 87 36 chr4 28561562 28562112 -173766235 + L2 LINE L2 2006 2583 -731 593 230 34 27 chr4 28562409 28562557 -173765790 - MLT1J1 LTR MaLR -297 149 1 235 246 0 18 chr4 28562588 28562645 -173765702 + L2 LINE L2 3160 3215 -98 2071 120 0 0 chr4 28562653 28562952 -173765395 - AluSg SINE Alu -11 299 1 2054 103 3 29 chr4 28562952 28563264 -173765083 - AluSx SINE Alu -7 305 2 231 154 58 67 chr4 28563323 28563427 -173764920 + (TTAA)n Simple_repeat Simple_repeat 4 106 0 254 351 114 0 chr4 28563438 28563569 -173764778 + L2 LINE L2 2594 2739 -575 2849 180 121 30 chr4 28563913 28564329 -173764018 - LTR48 LTR ERV1 0 787 410 1864 127 48 0 chr4 28564329 28564620 -173763727 + AluSx SINE Alu 1 305 -7 2849 180 121 30 chr4 28564620 28564839 -173763508 - LTR48 LTR ERV1 -377 410 212 1890 122 21 3 chr4 28564839 28565125 -173763222 + AluSg SINE Alu 1 291 -19 2849 180 121 30 chr4 28565125 28565210 -173763137 - LTR48 LTR ERV1 -575 212 1 1085 198 46 92 chr4 28565356 28565745 -173762602 - MER39 LTR ERV1 -66 641 271 319 241 56 19 chr4 28565721 28565829 -173762518 - LTR29 LTR ERV1 -507 115 4 * 201 175 0 0 chr4 28566641 28566681 -173761666 + (TA)n Simple_repeat Simple_repeat 1 40 0 2099 96 14 0 chr4 28566689 28566990 -173761357 - AluSx SINE Alu 0 305 1 2001 114 0 0 chr4 28568290 28568637 -173759710 - AluSx SINE Alu 0 348 2 245 277 143 18 chr4 28568695 28568807 -173759540 + L2 LINE L2 3138 3263 -9 1721 149 4 7 chr4 28569082 28569363 -173758984 + AluSx SINE Alu 1 280 -32 541 198 45 0 chr4 28569562 28569673 -173758674 + L1MA4 LINE L1 6072 6187 -113 2233 94 0 3 chr4 28570041 28570350 -173757997 + AluSx SINE Alu 1 308 -4 489 208 0 0 chr4 28570350 28570456 -173757891 + L1MA4 LINE L1 6179 6284 -16 261 0 0 0 chr4 28570463 28570492 -173757855 + (TA)n Simple_repeat Simple_repeat 1 29 0 204 179 0 0 chr4 28570533 28570572 -173757775 + (TGAA)n Simple_repeat Simple_repeat 4 42 0 2254 90 0 3 chr4 28570707 28571008 -173757339 + AluSg SINE Alu 1 300 -10 288 329 126 35 chr4 28571224 28571455 -173756892 - L2 LINE L2 -181 3091 2840 615 203 124 45 chr4 28571707 28571909 -173756438 + MIR SINE MIR 42 259 -3 1367 111 0 32 chr4 28572069 28572259 -173756088 - AluSx SINE Alu -20 292 109 773 47 0 28 chr4 28572259 28572366 -173755981 - MER11A LTR ERVK 0 1266 1163 855 104 0 0 chr4 28572374 28572489 -173755858 - AluSx SINE Alu -197 115 1 191 308 19 0 chr4 28572541 28572593 -173755754 + L2 LINE L2 3217 3269 -3 2869 149 46 8 chr4 28573120 28573617 -173754730 + L1MC2 LINE L1 5829 6344 0 2215 125 6 3 chr4 28573697 28574008 -173754339 + AluSx SINE Alu 1 312 0 1556 205 0 33 chr4 28574014 28574321 -173754026 + AluJo SINE Alu 1 297 -15 207 206 79 48 chr4 28574352 28574415 -173753932 - MIR3 SINE MIR -29 179 115 478 256 194 14 chr4 28575092 28575303 -173753044 + MIR SINE MIR 14 262 0 233 200 0 0 chr4 28576183 28576228 -173752119 + (CA)n Simple_repeat Simple_repeat 2 46 0 407 251 147 43 chr4 28577414 28577577 -173750770 + MIR SINE MIR 2 181 -81 230 313 0 73 chr4 28577606 28577702 -173750645 - MIR SINE MIR -169 93 5 1854 174 0 3 chr4 28577738 28578036 -173750311 + AluJb SINE Alu 1 297 -15 309 115 19 0 chr4 28578045 28578097 -173750250 + L1M4 LINE L1 5691 5743 -441 918 216 26 56 chr4 28578186 28578455 -173749892 - MIR SINE MIR 0 262 2 2410 84 0 0 chr4 28579247 28579544 -173748803 - AluSq SINE Alu -16 297 1 1051 105 0 0 chr4 28579548 28579681 -173748666 - AluSq/x SINE Alu -180 133 1 27 0 0 0 chr4 28579687 28579714 -173748633 + AT_rich Low_complexity Low_complexity 1 27 0 2169 129 0 13 chr4 28579714 28580024 -173748323 - AluSx SINE Alu -2 310 5 1387 80 0 6 chr4 28580064 28580239 -173748108 - L1PA11 LINE L1 -1 6173 6000 272 218 18 82 chr4 28581127 28581237 -173747110 + MIR SINE MIR 77 179 -83 287 24 0 24 chr4 28581503 28581544 -173746803 + (TG)n Simple_repeat Simple_repeat 1 40 0 2056 141 7 0 chr4 28581642 28581946 -173746401 - AluSx SINE Alu -6 306 1 324 348 124 11 chr4 28582242 28582509 -173745838 + L2 LINE L2 2460 2756 -558 569 248 94 35 chr4 28582578 28582780 -173745567 + MIR SINE MIR 48 261 -1 249 292 0 71 chr4 28583695 28583808 -173744539 + MIR SINE MIR 92 196 -66 216 0 0 0 chr4 28584660 28584684 -173743663 + (T)n Simple_repeat Simple_repeat 1 24 0 920 176 0 0 chr4 28584822 28584970 -173743377 + FRAM SINE Alu 8 155 -21 21 36 0 0 chr4 28585411 28585439 -173742908 + AT_rich Low_complexity Low_complexity 1 28 0 1167 150 25 101 chr4 28585755 28586041 -173742306 - AluJo SINE Alu -23 289 26 2143 110 13 0 chr4 28586108 28586408 -173741939 - AluSp SINE Alu -8 305 2 273 254 103 55 chr4 28586610 28586729 -173741618 + MIR SINE MIR 84 215 -47 2586 50 0 0 chr4 28586729 28587029 -173741318 + AluY SINE Alu 1 300 -11 273 254 103 55 chr4 28587029 28587074 -173741273 + MIR SINE MIR 215 256 -6 210 315 0 63 chr4 28588069 28588180 -173740167 - MIR3 SINE MIR -6 202 99 1392 199 63 0 chr4 28588229 28588500 -173739847 - AluJb SINE Alu -20 292 5 1637 187 14 7 chr4 28589771 28590065 -173738282 - AluJo SINE Alu -16 296 1 1101 187 153 0 chr4 28590151 28590354 -173737993 - MER8 DNA MER2_type -3 236 3 26 64 0 0 chr4 28590631 28590678 -173737669 + AT_rich Low_complexity Low_complexity 1 47 0 653 244 0 8 chr4 28590678 28590805 -173737542 - FLAM_A SINE Alu -7 126 1 1606 171 84 0 chr4 28590809 28591083 -173737264 - AluJb SINE Alu -15 297 1 2117 127 7 3 chr4 28591159 28591459 -173736888 - AluSx SINE Alu -11 301 1 329 285 113 26 chr4 28591551 28591702 -173736645 + MIR SINE MIR 81 244 -18 2310 88 3 7 chr4 28592289 28592597 -173735750 - AluSc SINE Alu -2 307 1 2238 91 0 13 chr4 28592732 28593039 -173735308 - AluY SINE Alu -7 304 2 274 208 0 0 chr4 28593470 28593518 -173734829 + FLAM_A SINE Alu 20 67 -65 1123 166 128 34 chr4 28593528 28593602 -173734745 + AluJo SINE Alu 42 108 -204 288 0 0 0 chr4 28593602 28593634 -173734713 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 1123 166 128 34 chr4 28593634 28593794 -173734553 + AluJo SINE Alu 108 298 -14 1835 113 46 30 chr4 28594091 28594393 -173733954 - AluSx SINE Alu -5 307 1 1235 180 0 9 chr4 28594806 28595023 -173733324 - AluJo SINE Alu -12 300 86 2470 88 0 0 chr4 28595268 28595575 -173732772 - AluSc SINE Alu -2 307 1 2131 107 0 0 chr4 28595699 28595979 -173732368 - AluSg1 SINE Alu -14 295 16 1227 155 50 5 chr4 28596023 28596242 -173732105 - AluJb SINE Alu -83 229 1 1055 287 118 20 chr4 28596543 28596999 -173731348 + Charlie2a DNA MER1_type 181 681 -2181 260 196 20 0 chr4 28597010 28597061 -173731286 + MIR SINE MIR 211 262 0 640 195 205 68 chr4 28597198 28597426 -173730921 + Charlie2a DNA MER1_type 693 888 -1974 2163 135 0 0 chr4 28597426 28597729 -173730618 - AluSx SINE Alu -9 303 1 640 195 205 68 chr4 28597729 28597885 -173730462 + Charlie2a DNA MER1_type 888 1130 -1732 824 208 19 0 chr4 28597888 28598047 -173730300 - AluJo SINE Alu -30 282 121 2579 206 147 6 chr4 28598077 28598869 -173729478 + Charlie2a DNA MER1_type 1195 2097 -765 240 35 0 0 chr4 28598870 28598899 -173729448 + (TG)n Simple_repeat Simple_repeat 1 29 0 974 158 0 0 chr4 28598899 28599045 -173729302 - AluSg/x SINE Alu -33 279 134 2183 125 3 10 chr4 28599045 28599356 -173728991 - AluSg SINE Alu 0 310 2 373 302 148 45 chr4 28599356 28599414 -173728933 + L1MC/D LINE L1 5515 5566 -2242 2452 138 97 3 chr4 28599414 28599805 -173728542 - MSTA LTR MaLR 0 428 1 373 302 148 45 chr4 28599805 28599948 -173728399 + L1MC/D LINE L1 5566 5737 -2071 1276 181 0 0 chr4 28600363 28600584 -173727763 - AluSq SINE Alu -8 305 85 926 137 0 0 chr4 28600584 28600715 -173727632 - AluY SINE Alu -62 249 119 565 247 53 7 chr4 28600839 28600989 -173727358 + MIR SINE MIR 74 230 -32 2304 96 0 7 chr4 28601103 28601406 -173726941 + AluSx SINE Alu 1 301 -11 398 255 235 0 chr4 28602486 28602635 -173725712 + MIR SINE MIR 66 249 -13 245 272 68 19 chr4 28602637 28602740 -173725607 + MIR SINE MIR 90 197 -65 1775 133 65 4 chr4 28602759 28603038 -173725309 + AluJo SINE Alu 5 300 -12 22 35 0 0 chr4 28603549 28603578 -173724769 + AT_rich Low_complexity Low_complexity 1 29 0 2358 65 0 0 chr4 28603784 28604077 -173724270 - AluY SINE Alu -18 293 1 244 232 139 46 chr4 28604824 28604975 -173723372 - MIR SINE MIR -28 234 70 27 0 0 0 chr4 28605018 28605045 -173723302 + AT_rich Low_complexity Low_complexity 1 27 0 21 36 0 0 chr4 28605083 28605111 -173723236 + AT_rich Low_complexity Low_complexity 1 28 0 45 19 0 0 chr4 28605160 28605212 -173723135 + AT_rich Low_complexity Low_complexity 1 52 0 22 0 0 0 chr4 28605298 28605320 -173723027 + AT_rich Low_complexity Low_complexity 1 22 0 2139 100 7 0 chr4 28605323 28605642 -173722705 + AluY SINE Alu 1 321 0 5750 185 53 34 chr4 28605655 28605998 -173722349 + L1MB8 LINE L1 3686 4021 -2157 2205 121 0 19 chr4 28605998 28606313 -173722034 + AluSq SINE Alu 3 311 -2 5750 185 53 34 chr4 28606313 28608212 -173720135 + L1MB8 LINE L1 4021 6174 -4 881 87 0 9 chr4 28608295 28608410 -173719937 - FLAM_C SINE Alu -25 118 5 731 197 162 0 chr4 28608608 28608750 -173719597 - FRAM SINE Alu -1 165 1 216 119 34 34 chr4 28608761 28608820 -173719527 + (TA)n Simple_repeat Simple_repeat 2 60 0 389 66 16 0 chr4 28608830 28608891 -173719456 + (TTTA)n Simple_repeat Simple_repeat 2 63 0 1763 179 0 0 chr4 28608894 28609174 -173719173 - AluSx SINE Alu -32 280 1 338 287 114 34 chr4 28609244 28609481 -173718866 - MIR SINE MIR 0 262 7 2641 50 0 0 chr4 28610163 28610465 -173717882 - AluY SINE Alu -9 302 1 309 252 158 0 chr4 28610571 28610698 -173717649 + MIR SINE MIR 89 235 -27 290 259 119 75 chr4 28610964 28611165 -173717182 - L2 LINE L2 0 3313 3104 277 290 37 19 chr4 28611546 28611653 -173716694 - MIR SINE MIR -88 174 66 2184 81 26 39 chr4 28611791 28612099 -173716248 + AluSq SINE Alu 1 304 -9 207 200 0 0 chr4 28613923 28613968 -173714379 + T-rich Low_complexity Low_complexity 1 45 0 192 152 0 0 chr4 28614042 28614075 -173714272 + T-rich Low_complexity Low_complexity 1 33 0 2030 120 43 3 chr4 28614523 28614823 -173713524 - AluSx SINE Alu 0 312 1 21 0 0 0 chr4 28614896 28614917 -173713430 + AT_rich Low_complexity Low_complexity 1 21 0 355 305 142 16 chr4 28615037 28615227 -173713120 + MIR SINE MIR 48 261 -1 2235 234 71 10 chr4 28615304 28615822 -173712525 + MLT1F1 LTR MaLR 14 563 -4 332 297 97 32 chr4 28615932 28616087 -173712260 - MIR3 SINE MIR -2 206 42 374 181 30 30 chr4 28616107 28616273 -173712074 + CT-rich Low_complexity Low_complexity 2 167 0 557 69 97 0 chr4 28616410 28616482 -173711865 - AluSg SINE Alu -230 80 2 1184 159 51 5 chr4 28616519 28616733 -173711614 - AluJb SINE Alu -83 229 6 268 325 13 0 chr4 28616891 28616968 -173711379 - MIR SINE MIR -103 105 28 2205 113 0 0 chr4 28616982 28617274 -173711073 + AluSx SINE Alu 14 305 -7 2183 104 3 0 chr4 28617363 28617650 -173710697 + AluSx SINE Alu 9 296 -16 421 305 170 9 chr4 28617656 28618171 -173710176 - L2 LINE L2 0 3313 2591 2427 87 0 3 chr4 28618195 28618505 -173709842 + AluSc SINE Alu 1 309 0 2042 251 169 20 chr4 28618516 28618950 -173709397 - L2 LINE L2 -910 2404 2036 1959 136 4 0 chr4 28618950 28619287 -173709060 + AluSx SINE Alu 1 338 0 2042 251 169 20 chr4 28619287 28619619 -173708728 - L2 LINE L2 -1278 2036 1508 1129 200 0 5 chr4 28619619 28619809 -173708538 - MER5A DNA MER1_type 0 189 1 2042 251 169 20 chr4 28619809 28619849 -173708498 - L2 LINE L2 -1806 1508 1475 235 324 27 0 chr4 28619987 28620061 -173708286 - MIR SINE MIR -103 105 30 1812 145 3 78 chr4 28621155 28621354 -173706993 - AluSx SINE Alu -5 307 141 2285 109 0 3 chr4 28621354 28621667 -173706680 - AluSq SINE Alu -1 312 1 1812 145 3 78 chr4 28621667 28621799 -173706548 - AluSx SINE Alu -171 141 1 2492 56 0 3 chr4 28621848 28622151 -173706196 - AluY SINE Alu -9 302 1 202 202 28 138 chr4 28622291 28622400 -173705947 - L2 LINE L2 -2793 521 425 23 54 0 0 chr4 28622586 28622623 -173705724 + AT_rich Low_complexity Low_complexity 1 37 0 3200 131 86 31 chr4 28623716 28624296 -173704051 - LTR9 LTR ERV1 0 612 1 2480 83 0 10 chr4 28624322 28624636 -173703711 + AluSx SINE Alu 1 311 -1 578 294 216 26 chr4 28624719 28625376 -173702971 - L2 LINE L2 -906 2408 1627 2298 108 3 9 chr4 28625564 28625879 -173702468 - AluSq SINE Alu 0 313 1 225 211 205 39 chr4 28626112 28626268 -173702079 - Charlie7 DNA MER1_type -5 2607 2426 1779 192 0 10 chr4 28626309 28626622 -173701725 - AluJo SINE Alu -2 310 1 1552 155 0 23 chr4 28626724 28626989 -173701358 - AluJo SINE Alu -53 259 1 363 199 20 73 chr4 28627005 28627156 -173701191 - Charlie7 DNA MER1_type -263 2349 2207 1103 249 131 18 chr4 28627177 28627627 -173700720 - Charlie7 DNA MER1_type -881 1731 1231 364 231 58 29 chr4 28627636 28627740 -173700607 + L2 LINE L2 3203 3309 -4 1045 248 40 43 chr4 28627787 28628183 -173700164 - Charlie7 DNA MER1_type -1453 1159 765 249 276 86 26 chr4 28628218 28628334 -173700013 - L2 LINE L2 -280 3033 2911 * 483 265 17 0 chr4 28628320 28628437 -173699910 - L2 LINE L2 -799 2515 2397 447 90 290 10 chr4 28628574 28628674 -173699673 + MER85 DNA T2_type 1 128 -11 21 0 0 0 chr4 28628685 28628706 -173699641 + AT_rich Low_complexity Low_complexity 1 21 0 1496 165 77 0 chr4 28629039 28629299 -173699048 - AluJb SINE Alu -32 280 1 1823 185 51 11 chr4 28629760 28630111 -173698236 - MLT1A1 LTR MaLR 0 365 1 751 134 0 5 chr4 28630136 28630339 -173698008 + AluSx SINE Alu 1 300 -12 490 279 76 6 chr4 28630988 28631160 -173697187 + MIR SINE MIR 32 215 -47 2192 99 7 16 chr4 28631225 28631529 -173696818 - AluSx SINE Alu -11 301 1 2498 51 0 6 chr4 28631535 28631848 -173696499 - AluY SINE Alu 0 311 1 1910 143 17 3 chr4 28632063 28632363 -173695984 - AluSx SINE Alu -8 304 1 537 201 5 147 chr4 28632680 28632864 -173695483 - AluJb SINE Alu -37 275 118 1319 181 92 8 chr4 28632991 28633251 -173695096 + AluJo SINE Alu 1 282 -30 449 287 109 5 chr4 28634286 28634488 -173693859 - L1MC/D LINE L1 -2012 5796 5574 2266 145 54 2 chr4 28635168 28635595 -173692752 - L1MB3 LINE L1 -1 6182 5734 342 0 0 0 chr4 28635634 28635672 -173692675 + (TG)n Simple_repeat Simple_repeat 2 39 0 1747 158 7 40 chr4 28636201 28636505 -173691842 + AluJo SINE Alu 3 296 -16 661 284 97 1 chr4 28636573 28636787 -173691560 - MIR SINE MIR -26 236 2 227 293 13 27 chr4 28636787 28636862 -173691485 - L2 LINE L2 -44 3269 3196 24 32 0 0 chr4 28636862 28636893 -173691454 + AT_rich Low_complexity Low_complexity 1 31 0 232 128 106 0 chr4 28637014 28637061 -173691286 - L1ME LINE L1 -322 5799 5748 189 0 0 0 chr4 28637120 28637141 -173691206 + (T)n Simple_repeat Simple_repeat 1 21 0 203 135 81 0 chr4 28638004 28638041 -173690306 - L2 LINE L2 -1 3312 3273 1990 92 38 89 chr4 28638303 28638618 -173689729 - AluSx SINE Alu -13 299 1 270 56 0 0 chr4 28638753 28638789 -173689558 + (TG)n Simple_repeat Simple_repeat 2 37 0 2129 148 0 0 chr4 28640834 28641144 -173687203 - AluSg SINE Alu 0 310 1 2165 115 0 0 chr4 28641149 28641445 -173686902 - AluSx SINE Alu -16 296 1 21 0 0 0 chr4 28641609 28641630 -173686717 + AT_rich Low_complexity Low_complexity 1 21 0 1137 211 141 14 chr4 28642050 28642419 -173685928 + L1MEc LINE L1 520 935 -5461 883 144 0 22 chr4 28642422 28642561 -173685786 - FLAM_C SINE Alu -7 136 1 661 267 59 10 chr4 28642608 28642810 -173685537 - MER58A DNA MER1_type 0 224 13 399 280 107 33 chr4 28642836 28642866 -173685481 + L1MEc LINE L1 989 1015 -5200 207 0 0 0 chr4 28642866 28642889 -173685458 + (TC)n Simple_repeat Simple_repeat 1 23 0 399 280 107 33 chr4 28642889 28643201 -173685146 + L1MEc LINE L1 1015 1359 -4856 1789 161 0 24 chr4 28643201 28643499 -173684848 + AluSx SINE Alu 1 291 -21 399 280 107 33 chr4 28643499 28643739 -173684608 + L1MEc LINE L1 1359 1580 -4635 323 286 82 10 chr4 28643743 28643841 -173684506 + L1MEc LINE L1 1652 1756 -4640 549 263 16 10 chr4 28643851 28644045 -173684302 + L1MEc LINE L1 3341 3535 -2680 778 255 39 24 chr4 28644152 28644360 -173683987 - MIR SINE MIR -49 213 3 195 129 0 0 chr4 28644583 28644614 -173683733 + (T)n Simple_repeat Simple_repeat 1 31 0 1016 191 0 0 chr4 28644623 28644801 -173683546 - FRAM SINE Alu -2 174 1 189 107 0 0 chr4 28645822 28645850 -173682497 + (TA)n Simple_repeat Simple_repeat 2 29 0 621 182 49 144 chr4 28646062 28646326 -173682021 + L1MC4 LINE L1 6909 7147 -895 389 320 60 0 chr4 28646325 28646553 -173681794 + L1MEc LINE L1 97 461 -5935 * 9146 167 29 9 chr4 28646710 28648627 -173679720 + L1M1 LINE L1 3412 5368 -789 1805 144 29 32 chr4 28648627 28648940 -173679407 + AluJb SINE Alu 1 312 0 9146 167 29 9 chr4 28648940 28648954 -173679393 + L1M1 LINE L1 5368 5380 -777 651 111 96 0 chr4 28648990 28649125 -173679222 + L1M1 LINE L1 5354 5501 -799 830 138 0 0 chr4 28649228 28649344 -173679003 - AluJb SINE Alu -195 117 2 779 285 28 9 chr4 28650347 28650561 -173677786 - MIR SINE MIR -11 251 34 4277 200 26 18 chr4 28650694 28651402 -173676945 + L1MB2 LINE L1 4295 4996 -1175 2234 96 0 3 chr4 28651402 28651695 -173676652 + AluSg SINE Alu 1 292 -18 4277 200 26 18 chr4 28651695 28651999 -173676348 + L1MB2 LINE L1 4996 5296 -875 2448 87 0 13 chr4 28651999 28652309 -173676038 + AluSq SINE Alu 1 306 -7 4277 200 26 18 chr4 28652309 28653160 -173675187 + L1MB2 LINE L1 5296 6170 -1 220 355 80 7 chr4 28653206 28653344 -173675003 + L3b LINE CR1 1428 1575 -8 356 312 40 8 chr4 28653850 28653975 -173674372 - L2 LINE L2 -3 3310 3182 1734 184 23 10 chr4 28655026 28655330 -173673017 - AluJb SINE Alu -4 308 1 1079 157 9 79 chr4 28655663 28655879 -173672468 - AluJo SINE Alu -15 297 97 1689 231 44 0 chr4 28656043 28656541 -173671806 - L1M4c LINE L1 -4591 1793 1274 * 4642 158 44 3 chr4 28656531 28657492 -173670855 - L1M2 LINE L1 -4146 2703 1704 2875 268 29 8 chr4 28657497 28658214 -173670133 - L1M2 LINE L1 -5501 1348 617 339 260 96 34 chr4 28658505 28658651 -173669696 - L1ME4a LINE L1 -2 6119 5965 675 185 7 0 chr4 28658675 28658810 -173669537 - L1PA16 LINE L1 -9 6157 6022 239 311 107 29 chr4 28659897 28660000 -173668347 - MIR SINE MIR -109 153 43 183 80 0 0 chr4 28660009 28660034 -173668313 + (A)n Simple_repeat Simple_repeat 1 25 0 332 232 34 84 chr4 28660135 28660294 -173668053 - MER5A DNA MER1_type -21 168 7 336 212 61 30 chr4 28660366 28660465 -173667882 - MER58A DNA MER1_type 0 143 42 2505 74 0 3 chr4 28660467 28660779 -173667568 + AluSq SINE Alu 3 313 0 251 287 254 24 chr4 28660967 28661389 -173666958 + L2 LINE L2 1627 2145 -1169 2086 146 0 3 chr4 28661692 28662001 -173666346 - AluSx SINE Alu -4 308 1 23 33 0 0 chr4 28662087 28662117 -173666230 + AT_rich Low_complexity Low_complexity 1 30 0 518 323 25 5 chr4 28663134 28663335 -173665012 + MIR SINE MIR 51 255 -7 21 0 0 0 chr4 28665455 28665476 -173662871 + AT_rich Low_complexity Low_complexity 1 21 0 705 253 80 84 chr4 28666590 28667798 -173660549 + L1M4 LINE L1 1147 2475 -4350 2164 121 0 0 chr4 28667798 28668088 -173660259 + AluSp SINE Alu 1 290 -23 705 253 80 84 chr4 28668088 28668308 -173660039 + L1M4 LINE L1 2475 2694 -4131 1746 199 66 93 chr4 28668361 28668435 -173659912 + L1MCa LINE L1 28 102 -5805 1658 182 4 18 chr4 28668435 28668715 -173659632 + AluJo SINE Alu 1 276 -36 537 44 0 0 chr4 28668720 28668788 -173659559 + (TAGA)n Simple_repeat Simple_repeat 4 71 0 1746 199 66 93 chr4 28668788 28669673 -173658674 + L1MCa LINE L1 106 940 -4967 351 133 0 239 chr4 28669682 28669795 -173658552 + Tigger1 DNA MER2_type 24 109 -2309 4483 131 11 11 chr4 28669798 28670553 -173657794 + Tigger1 DNA MER2_type 1432 2186 -232 26 0 0 0 chr4 28670664 28670690 -173657657 + AT_rich Low_complexity Low_complexity 1 26 0 2569 126 24 7 chr4 28672642 28673055 -173655292 + LTR39 LTR ERV1 1 420 -363 2381 186 66 103 chr4 28673055 28673737 -173654610 - LTR8A LTR ERV1 0 727 71 180 0 0 0 chr4 28673898 28673918 -173654429 + (T)n Simple_repeat Simple_repeat 1 20 0 260 258 15 0 chr4 28673922 28673988 -173654359 + MLT1J2 LTR MaLR 97 163 -287 594 325 48 4 chr4 28674233 28674464 -173653883 - MIR SINE MIR -21 241 1 450 53 0 0 chr4 28674701 28674758 -173653589 + (CA)n Simple_repeat Simple_repeat 2 58 0 1847 142 25 0 chr4 28674868 28675143 -173653204 + AluJb SINE Alu 15 296 -16 2231 137 0 0 chr4 28675420 28675727 -173652620 + AluSx SINE Alu 1 307 -5 5674 33 6 0 chr4 28676419 28677084 -173651263 + L1PA4 LINE L1 5487 6155 0 578 194 82 24 chr4 28677373 28677543 -173650804 - MER112 DNA MER1_type 0 260 81 335 256 141 73 chr4 28677922 28678113 -173650234 - MER112 DNA MER1_type -1 259 56 273 29 0 0 chr4 28678238 28678272 -173650075 + (TTTTG)n Simple_repeat Simple_repeat 3 36 0 2073 124 13 3 chr4 28678387 28678685 -173649662 - AluY SINE Alu -10 301 1 2251 104 0 22 chr4 28678809 28679125 -173649222 + AluSg SINE Alu 1 309 -1 1801 152 45 3 chr4 28679166 28679455 -173648892 + AluSx SINE Alu 1 301 -11 346 287 11 0 chr4 28680978 28681072 -173647275 + L2 LINE L2 3218 3312 -1 415 125 16 0 chr4 28682765 28682829 -173645518 + AluS SINE Alu 3 67 -244 232 244 0 0 chr4 28683084 28683129 -173645218 + (TG)n Simple_repeat Simple_repeat 2 46 0 1140 164 49 4 chr4 28684534 28684613 -173643734 - L1MB1 LINE L1 -1 6167 6093 276 30 0 0 chr4 28684613 28684646 -173643701 + (TA)n Simple_repeat Simple_repeat 1 33 0 * 297 0 0 0 chr4 28684645 28684678 -173643669 + (CA)n Simple_repeat Simple_repeat 2 34 0 1140 164 49 4 chr4 28684646 28684823 -173643524 - L1MB1 LINE L1 -75 6093 5933 2172 149 30 25 chr4 28684850 28685212 -173643135 - THE1B LTR MaLR 0 364 1 270 297 0 0 chr4 28685551 28685615 -173642732 - MLT1L LTR MaLR -205 410 347 318 246 26 22 chr4 28686004 28686125 -173642222 - MLT1H LTR MaLR -268 162 16 457 280 17 0 chr4 28686721 28686839 -173641508 + MIR3 SINE MIR 64 183 -25 627 272 134 22 chr4 28688383 28688696 -173639651 - MER7A DNA MER2_type 0 346 1 9484 206 23 3 chr4 28688799 28690818 -173637529 + L1 LINE L1 2261 4318 -1828 17346 76 15 5 chr4 28690919 28693304 -173635043 + L1P LINE L1 1523 3930 -2216 1741 169 0 18 chr4 28693550 28693823 -173634524 + AluJb SINE Alu 2 269 -43 914 171 131 0 chr4 28694323 28694498 -173633849 - MER20 DNA MER1_type 0 219 22 208 315 0 0 chr4 28695138 28695192 -173633155 + (TATG)n Simple_repeat Simple_repeat 3 56 0 594 178 76 8 chr4 28695378 28695496 -173632851 - LTR39 LTR ERV1 0 783 658 288 174 0 0 chr4 28695654 28695700 -173632647 - MER20 DNA MER1_type 0 219 174 * 2116 139 40 32 chr4 28695692 28696065 -173632282 - LTR39 LTR ERV1 -158 625 250 898 117 41 21 chr4 28696064 28696209 -173632138 - LTR39 LTR ERV1 -635 148 1 * 1502 225 63 3 chr4 28696231 28696533 -173631814 + MLT1A1 LTR MaLR 4 323 -42 670 159 212 69 chr4 28697279 28697468 -173630879 + MER20 DNA MER1_type 1 216 -3 1262 174 28 0 chr4 28698512 28698724 -173629623 + MER20 DNA MER1_type 2 219 0 1065 244 25 11 chr4 28698934 28699208 -173629139 - L1MC4 LINE L1 -522 7520 7243 325 176 96 166 chr4 28700380 28700491 -173627856 - MSTB2 LTR MaLR -267 190 98 180 0 0 0 chr4 28700491 28700511 -173627836 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 325 176 96 166 chr4 28700511 28700598 -173627749 - MSTB2 LTR MaLR -359 98 6 368 310 97 13 chr4 28700772 28700927 -173627420 - MLT1K LTR MaLR -319 269 102 256 275 118 90 chr4 28700964 28701142 -173627205 - L2 LINE L2 -98 3174 2992 444 221 0 0 chr4 28701301 28701378 -173626969 + L1MC/D LINE L1 5512 5588 -2220 26 0 0 0 chr4 28701378 28701404 -173626943 + AT_rich Low_complexity Low_complexity 1 26 0 5713 30 0 3 chr4 28701640 28702791 -173625556 - L1PA4 LINE L1 -234 5921 4774 819 239 21 50 chr4 28702790 28703094 -173625253 + L1P1 LINE L1 5574 5872 -283 * 667 249 61 58 chr4 28703094 28703497 -173624850 + LTR33A LTR ERVL 2 436 -87 256 314 0 20 chr4 28703569 28703671 -173624676 - L2 LINE L2 -972 2342 2243 2263 96 0 63 chr4 28705249 28705581 -173622766 - AluSx SINE Alu -1 311 1 2260 92 20 3 chr4 28705816 28706109 -173622238 - AluSc SINE Alu -11 298 1 237 286 67 19 chr4 28706717 28706822 -173621525 + MER5A DNA MER1_type 80 189 0 302 171 11 57 chr4 28706867 28706955 -173621392 - L2 LINE L2 -4 3268 3185 207 231 115 0 chr4 28706979 28707057 -173621290 + MIR3 SINE MIR 112 198 -10 5809 139 33 34 chr4 28707308 28708490 -173619857 + pTR5 LTR ERV1 743 2033 -405 239 200 0 0 chr4 28708493 28708543 -173619804 + LTR30 LTR ERV1 555 604 -118 449 316 60 0 chr4 28709783 28710001 -173618346 + MIR SINE MIR 31 261 -1 258 285 30 90 chr4 28710176 28710376 -173617971 - L2 LINE L2 0 3313 3126 2273 97 0 0 chr4 28710461 28710749 -173617598 + AluY SINE Alu 1 288 -23 1052 208 28 0 chr4 28710846 28711058 -173617289 + MER20 DNA MER1_type 2 219 0 813 240 59 18 chr4 28711539 28711760 -173616587 + MIR SINE MIR 28 257 -5 3033 214 128 16 chr4 28711798 28712636 -173615711 + MER52A LTR ERV1 1 932 -823 496 88 15 0 chr4 28712737 28712805 -173615542 - AluS SINE Alu -243 70 2 2474 199 42 40 chr4 28713099 28713722 -173614625 + MLT1E3 LTR MaLR 1 624 0 2366 71 0 14 chr4 28714349 28714676 -173613671 - AluY SINE Alu 0 311 1 1675 114 62 102 chr4 28715087 28715411 -173612936 - AluYb8 SINE Alu -7 311 1 214 250 0 0 chr4 28716419 28716463 -173611884 + GA-rich Low_complexity Low_complexity 5 48 0 218 393 37 7 chr4 28716550 28716685 -173611662 - MIR SINE MIR -110 152 14 1473 220 21 52 chr4 28717852 28718234 -173610113 - MLT1A2 LTR MaLR -4 370 1 412 310 69 5 chr4 28718705 28718908 -173609439 + MIR SINE MIR 29 244 -18 540 68 0 0 chr4 28719628 28719701 -173608646 + (TGGA)n Simple_repeat Simple_repeat 1 73 0 368 277 111 101 chr4 28720580 28720887 -173607460 + MER102b DNA MER1_type 19 339 -2 1507 178 57 32 chr4 28721063 28721416 -173606931 - MLT1A1 LTR MaLR -2 363 1 546 122 0 0 chr4 28721908 28722006 -173606341 + (GGAA)n Simple_repeat Simple_repeat 1 98 0 251 254 28 49 chr4 28722133 28722275 -173606072 - Charlie7 DNA MER1_type -4 2608 2470 262 239 141 70 chr4 28722341 28722483 -173605864 + LTR16A LTR ERVL 117 268 -182 333 234 32 21 chr4 28722583 28722677 -173605670 - MIR SINE MIR -66 196 102 1036 170 36 18 chr4 28722936 28723160 -173605187 + L1MB2 LINE L1 5944 6171 0 1811 130 37 4 chr4 28724048 28724317 -173604030 - AluSx SINE Alu -33 279 5 354 328 47 31 chr4 28725397 28725525 -173602822 - L2 LINE L2 -5 3267 3138 22 35 0 0 chr4 28725539 28725568 -173602779 + AT_rich Low_complexity Low_complexity 1 29 0 2422 76 0 3 chr4 28725897 28726198 -173602149 - AluY SINE Alu -11 300 1 216 0 0 0 chr4 28726216 28726240 -173602107 + (A)n Simple_repeat Simple_repeat 1 24 0 381 131 0 0 chr4 28726634 28726695 -173601652 + (A)n Simple_repeat Simple_repeat 1 61 0 1301 76 0 0 chr4 28727535 28727692 -173600655 - AluSq SINE Alu -156 157 1 1792 167 3 10 chr4 28728679 28728972 -173599375 - AluJo SINE Alu -21 291 1 2157 116 0 0 chr4 28729073 28729365 -173598982 - AluY SINE Alu -19 292 1 189 216 0 0 chr4 28729494 28729531 -173598816 + L2 LINE L2 3261 3297 -16 4420 235 100 26 chr4 28729788 28730713 -173597634 + L1ME1 LINE L1 3544 4400 -1944 1740 182 0 7 chr4 28730713 28731004 -173597343 + AluJb SINE Alu 1 289 -23 4420 235 100 26 chr4 28731004 28731753 -173596594 + L1ME1 LINE L1 4400 5441 -903 1382 184 164 10 chr4 28731753 28732057 -173596290 - MLT1A1 LTR MaLR 0 365 15 2175 237 49 24 chr4 28732128 28732765 -173595582 + L1ME1 LINE L1 5509 6161 -5 243 67 0 0 chr4 28732856 28732922 -173595425 - AluSq SINE Alu 0 316 251 1221 110 6 0 chr4 28732923 28733087 -173595260 - AluSq SINE Alu -148 165 1 1894 163 0 0 chr4 28733314 28733615 -173594732 - AluSx SINE Alu -11 301 1 2392 67 0 7 chr4 28733966 28734266 -173594081 - AluY SINE Alu -13 298 1 193 308 0 64 chr4 28734749 28734827 -173593520 - L3 LINE CR1 -75 1502 1430 1498 212 27 0 chr4 28735113 28735406 -173592941 + AluJo SINE Alu 1 301 -11 419 211 22 0 chr4 28735440 28735530 -173592817 + MSTB1 LTR MaLR 1 92 -340 * 704 175 147 0 chr4 28735525 28735702 -173592645 + MSTB1 LTR MaLR 193 395 -37 669 226 42 12 chr4 28737462 28737567 -173590780 - MER58C DNA MER1_type -2205 215 102 2275 102 0 0 chr4 28737567 28737870 -173590477 - AluY SINE Alu -7 304 2 669 226 42 12 chr4 28737870 28737932 -173590415 - MER58C DNA MER1_type -2318 102 43 216 0 0 0 chr4 28738009 28738033 -173590314 + (TG)n Simple_repeat Simple_repeat 1 24 0 2083 130 0 0 chr4 28738558 28738850 -173589497 - AluSg SINE Alu -18 292 1 1943 113 46 0 chr4 28739623 28739905 -173588442 - AluSx SINE Alu -5 307 13 24 53 0 0 chr4 28740075 28740113 -173588234 + AT_rich Low_complexity Low_complexity 1 38 0 810 230 22 11 chr4 28740206 28740384 -173587963 + MER20 DNA MER1_type 39 218 -1 202 194 0 0 chr4 28740807 28740843 -173587504 + MIR SINE MIR 217 252 -10 198 252 0 0 chr4 28741137 28741181 -173587166 - MIR SINE MIR -61 147 110 367 217 298 0 chr4 28741266 28741427 -173586920 + MIR SINE MIR 37 245 -17 2294 106 3 0 chr4 28741814 28742126 -173586221 - AluSp SINE Alu 0 313 1 370 350 38 6 chr4 28742680 28742840 -173585507 + L2 LINE L2 2178 2342 -972 6063 86 37 53 chr4 28743320 28744311 -173584036 - L1PA14 LINE L1 -1 6160 5162 402 228 26 44 chr4 28744535 28744649 -173583698 + MIR SINE MIR 137 248 -14 373 302 25 31 chr4 28745030 28745189 -173583158 - MIR SINE MIR -49 213 56 29 0 0 0 chr4 28745526 28745555 -173582792 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 28746003 28746024 -173582323 + AT_rich Low_complexity Low_complexity 1 21 0 2175 152 24 34 chr4 28746399 28746934 -173581413 - LTR10E LTR ERV1 -43 590 1 21 0 0 0 chr4 28747378 28747399 -173580948 + AT_rich Low_complexity Low_complexity 1 21 0 1788 133 91 0 chr4 28747822 28748107 -173580240 - AluJb SINE Alu -1 311 1 422 331 36 57 chr4 28748525 28748773 -173579574 - MIR SINE MIR -16 246 4 568 182 15 38 chr4 28749223 28749355 -173578992 + FLAM_C SINE Alu 1 129 -4 2393 92 0 0 chr4 28749433 28749736 -173578611 - AluSg SINE Alu -7 303 1 817 126 0 47 chr4 28751067 28751219 -173577128 + FLAM_C SINE Alu 1 146 0 2497 49 0 26 chr4 28751764 28752070 -173576277 + AluY SINE Alu 1 298 -13 725 180 190 15 chr4 28752119 28752195 -173576152 + MER46A DNA MER2_type 2 63 -2668 1940 138 4 0 chr4 28752195 28752470 -173575877 - AluSx SINE Alu -36 276 1 725 180 190 15 chr4 28752470 28752593 -173575754 + MER46A DNA MER2_type 63 236 0 1073 244 123 71 chr4 28753030 28753510 -173574837 + L2 LINE L2 2809 3313 0 419 204 76 23 chr4 28753771 28753903 -173574444 + Charlie8 DNA MER1_type 46 184 -2233 320 297 91 12 chr4 28753949 28754114 -173574233 + Charlie8 DNA MER1_type 295 472 -1945 1800 168 10 0 chr4 28754115 28754407 -173573940 - AluJb SINE Alu -17 295 1 1231 200 122 15 chr4 28756198 28756468 -173571879 - AluJo SINE Alu -13 299 1 21 36 0 0 chr4 28757471 28757499 -173570848 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr4 28757915 28757950 -173570397 + AT_rich Low_complexity Low_complexity 1 35 0 1877 174 3 0 chr4 28758906 28759216 -173569131 - AluJb SINE Alu -1 311 1 324 267 48 91 chr4 28760839 28761049 -173567298 + MER20 DNA MER1_type 2 202 -17 2151 101 7 7 chr4 28761243 28761541 -173566806 - AluSx SINE Alu -14 298 1 525 218 99 149 chr4 28761577 28762431 -173565916 - L1MC5 LINE L1 -107 7854 7043 200 200 0 0 chr4 28762488 28762528 -173565819 + T-rich Low_complexity Low_complexity 1 40 0 210 91 0 0 chr4 28762536 28762569 -173565778 + (TTG)n Simple_repeat Simple_repeat 2 34 0 384 240 112 63 chr4 28762627 28763046 -173565301 - L1MC5 LINE L1 -48 7913 7342 1149 183 249 22 chr4 28763047 28763420 -173564927 - MER31B LTR ERV1 -1 660 5 1200 173 49 124 chr4 28765241 28765548 -173562799 + AluJb SINE Alu 1 284 -28 1834 263 222 27 chr4 28766471 28767799 -173560548 - L2 LINE L2 -84 3229 1636 312 242 141 0 chr4 28767974 28768073 -173560274 + MIR SINE MIR 33 145 -63 581 247 146 6 chr4 28768225 28768383 -173559964 + MER5A DNA MER1_type 10 189 0 312 27 0 0 chr4 28771122 28771159 -173557188 + (A)n Simple_repeat Simple_repeat 1 37 0 2128 119 0 7 chr4 28775308 28775603 -173552744 - AluSx SINE Alu -19 293 1 23 0 0 0 chr4 28775845 28775868 -173552479 + AT_rich Low_complexity Low_complexity 1 23 0 1075 106 182 20 chr4 28777023 28777221 -173551126 - MER30 DNA MER1_type 0 230 1 1874 141 3 16 chr4 28778510 28778816 -173549531 - AluSx SINE Alu -10 302 1 1672 175 0 16 chr4 28778816 28779119 -173549228 - AluJb SINE Alu -14 298 1 214 193 35 18 chr4 28779207 28779264 -173549083 - L2 LINE L2 -83 3230 3173 851 209 49 29 chr4 28779900 28780144 -173548203 - L2 LINE L2 -925 2389 2141 326 247 0 34 chr4 28780171 28780260 -173548087 - MER5A DNA MER1_type -95 94 9 567 230 164 0 chr4 28781543 28781695 -173546652 + L2 LINE L2 1966 2142 -1172 1324 262 111 91 chr4 28781892 28783003 -173545344 + L2 LINE L2 2158 3311 -2 301 268 104 56 chr4 28783229 28783498 -173544849 - HAL1 LINE L1 -223 2284 2003 370 275 33 0 chr4 28783540 28783631 -173544716 - L2 LINE L2 -25 3288 3195 525 271 77 51 chr4 28783805 28784196 -173544151 - HAL1 LINE L1 -1045 1462 1062 1651 133 12 0 chr4 28784259 28784508 -173543839 - MER67A LTR ERV1 -291 252 1 2818 211 102 16 chr4 28784600 28785446 -173542901 + L1PB3 LINE L1 2287 3206 -3656 946 114 0 0 chr4 28785468 28785600 -173542747 + AluSp SINE Alu 1 132 -181 5401 153 64 38 chr4 28785620 28787531 -173540816 + L1PB3 LINE L1 4915 6869 -1 567 301 93 25 chr4 28787826 28788027 -173540320 - MIR SINE MIR -36 226 17 2307 70 0 0 chr4 28788435 28788722 -173539625 + L1PA8 LINE L1 5866 6152 -20 654 185 123 0 chr4 28788844 28789006 -173539341 - MER5A DNA MER1_type -4 185 4 192 77 0 0 chr4 28789112 28789138 -173539209 + (A)n Simple_repeat Simple_repeat 1 26 0 313 306 48 0 chr4 28789238 28789362 -173538985 + MIR3 SINE MIR 78 207 -1 585 306 35 15 chr4 28789396 28789595 -173538752 - MIR SINE MIR 0 262 60 358 285 96 56 chr4 28789628 28789859 -173538488 + MIR SINE MIR 21 256 -6 1197 119 11 0 chr4 28791371 28791548 -173536799 - AluSg/x SINE Alu -1 309 131 667 212 29 0 chr4 28791617 28791754 -173536593 + L1ME1 LINE L1 5647 5787 -379 1468 240 113 18 chr4 28791755 28792189 -173536158 + MLT1D LTR MaLR 1 475 -30 1281 239 53 6 chr4 28792194 28792549 -173535798 + L1ME1 LINE L1 5787 6158 -8 972 333 70 23 chr4 28793267 28793823 -173534524 - ERVL LTR ERVL -854 4910 4329 2214 98 0 19 chr4 28793855 28794171 -173534176 - AluSq SINE Alu -1 312 3 757 265 67 52 chr4 28794208 28794536 -173533811 - LTR16C LTR ERVL -1 490 158 784 221 47 21 chr4 28795024 28795214 -173533133 + MIR SINE MIR 18 212 -50 725 269 175 44 chr4 28795221 28795586 -173532761 + L2 LINE L2 2897 3309 -4 228 135 0 0 chr4 28795696 28795733 -173532614 + (CATA)n Simple_repeat Simple_repeat 4 40 0 213 121 0 0 chr4 28796230 28796263 -173532084 + (CA)n Simple_repeat Simple_repeat 1 33 0 288 0 0 0 chr4 28796542 28796574 -173531773 + (T)n Simple_repeat Simple_repeat 1 32 0 2101 113 0 10 chr4 28796718 28797020 -173531327 - AluSx SINE Alu -13 299 1 210 271 260 0 chr4 28797334 28797430 -173530917 - L2 LINE L2 -3 3310 3190 2137 105 0 0 chr4 28798254 28798549 -173529798 + AluSg SINE Alu 1 295 -15 319 190 141 124 chr4 28798581 28798651 -173529696 - MER5A DNA MER1_type -53 136 62 1888 144 0 25 chr4 28798651 28798970 -173529377 - AluSx SINE Alu -1 311 1 319 190 141 124 chr4 28798970 28799020 -173529327 - MER5A DNA MER1_type -127 62 14 464 266 62 62 chr4 28799124 28799365 -173528982 - MIR SINE MIR -9 253 13 733 168 0 8 chr4 28799425 28799544 -173528803 + FLAM_C SINE Alu 11 128 -15 232 377 13 0 chr4 28799545 28799622 -173528725 - L2 LINE L2 -35 3278 3201 319 296 20 0 chr4 28799675 28799773 -173528574 + L2 LINE L2 2530 2629 -685 838 290 22 4 chr4 28799864 28800095 -173528252 + MIR SINE MIR 4 238 -24 525 278 75 28 chr4 28800120 28800375 -173527972 + L2 LINE L2 3047 3313 0 247 162 116 93 chr4 28801318 28801430 -173526917 - MLT1J2 LTR MaLR 0 450 285 413 147 0 27 chr4 28801540 28801615 -173526732 - MLT1H LTR MaLR -341 208 136 229 139 0 0 chr4 28803098 28803134 -173525213 - L2 LINE L2 -8 3305 3270 1368 103 0 0 chr4 28803232 28803417 -173524930 - AluSg/x SINE Alu -16 296 112 525 307 73 18 chr4 28803442 28803660 -173524687 - MIR SINE MIR -5 257 28 2278 98 0 0 chr4 28804107 28804413 -173523934 + AluSx SINE Alu 1 306 -6 501 295 108 6 chr4 28804448 28804614 -173523733 + MER5A DNA MER1_type 1 183 -6 351 280 93 9 chr4 28805078 28805185 -173523162 + MIR SINE MIR 51 166 -96 446 175 18 57 chr4 28805304 28805475 -173522872 + MLT1D LTR MaLR 3 235 -270 976 132 0 22 chr4 28805485 28805531 -173522816 + (GGAGAA)n Simple_repeat Simple_repeat 1 222 0 976 132 0 22 chr4 28805531 28805713 -173522634 + (GGAGAA)n Simple_repeat Simple_repeat 3 180 0 1089 239 62 26 chr4 28805801 28806107 -173522240 + MLT1D LTR MaLR 181 497 -8 485 185 11 0 chr4 28806385 28806477 -173521870 + MER53 DNA DNA 96 188 -1 999 174 0 0 chr4 28806891 28807058 -173521289 - MLT1B LTR MaLR -42 348 182 261 313 0 0 chr4 28807199 28807266 -173521081 - MER63B DNA MER1_type 0 435 369 1381 166 0 17 chr4 28807291 28807625 -173520722 - MSTA LTR MaLR -2 426 1 1098 206 28 32 chr4 28807626 28807879 -173520468 - MER63B DNA MER1_type -167 269 18 351 283 10 10 chr4 28807882 28807981 -173520366 - MLT1L LTR MaLR -390 225 127 2013 160 70 11 chr4 28808014 28808388 -173519959 - MSTD LTR MaLR 0 396 1 216 275 145 14 chr4 28809029 28809098 -173519249 - MIR SINE MIR -1 261 184 315 0 0 0 chr4 28809376 28809411 -173518936 + (TC)n Simple_repeat Simple_repeat 2 36 0 1640 194 36 17 chr4 28809757 28810113 -173518234 + MLT1A1 LTR MaLR 3 365 0 23 68 0 0 chr4 28810586 28810630 -173517717 + AT_rich Low_complexity Low_complexity 1 44 0 4420 124 5 0 chr4 28810655 28811292 -173517055 + L1PA16 LINE L1 5519 6158 -8 204 321 186 14 chr4 28811311 28811451 -173516896 - MIR SINE MIR -86 176 13 203 354 62 8 chr4 28811473 28811603 -173516744 - L2 LINE L2 -849 2465 2329 1526 175 15 4 chr4 28811897 28812171 -173516176 + AluJo SINE Alu 1 277 -35 33 25 0 0 chr4 28812171 28812211 -173516136 + AT_rich Low_complexity Low_complexity 1 40 0 515 253 61 0 chr4 28812459 28812618 -173515729 + MIR SINE MIR 36 205 -57 2299 77 3 3 chr4 28812757 28813056 -173515291 - AluSp SINE Alu -14 299 1 1742 164 13 7 chr4 28813314 28813624 -173514723 - AluJo SINE Alu 0 312 1 363 366 15 8 chr4 28813681 28813812 -173514535 - MIR SINE MIR -61 147 16 196 339 0 15 chr4 28814054 28814119 -173514228 - L2 LINE L2 0 3272 3209 3013 123 25 53 chr4 28814782 28815052 -173513295 + MER41E LTR ERV1 1 277 -235 2298 97 0 0 chr4 28815052 28815363 -173512984 + AluSq SINE Alu 1 311 -2 3013 123 25 53 chr4 28815363 28815457 -173512890 + MER41E LTR ERV1 277 372 -140 2368 70 0 0 chr4 28815457 28815757 -173512590 - AluY SINE Alu -11 300 1 3013 123 25 53 chr4 28815757 28815918 -173512429 + MER41E LTR ERV1 372 512 0 1828 140 6 37 chr4 28818388 28818709 -173509638 + AluJb SINE Alu 1 311 -1 236 202 24 60 chr4 28819285 28819369 -173508978 + CT-rich Low_complexity Low_complexity 2 82 0 21 36 0 0 chr4 28820114 28820142 -173508205 + AT_rich Low_complexity Low_complexity 1 28 0 722 274 27 39 chr4 28821382 28821641 -173506706 - MIR SINE MIR -3 259 4 392 243 14 93 chr4 28822253 28822393 -173505954 - MIR SINE MIR -81 181 53 839 145 0 0 chr4 28822516 28822633 -173505714 + FLAM_C SINE Alu 2 118 -15 2342 89 0 6 chr4 28822665 28822979 -173505368 + AluSp SINE Alu 1 312 -1 565 235 43 31 chr4 28823062 28823224 -173505123 + MIR SINE MIR 65 228 -34 225 244 148 15 chr4 28824216 28824351 -173503996 + L1ME4a LINE L1 5966 6118 -3 1977 139 0 0 chr4 28824387 28824688 -173503659 + AluSx SINE Alu 1 301 -11 22 0 0 0 chr4 28824720 28824742 -173503605 + AT_rich Low_complexity Low_complexity 1 22 0 365 137 123 22 chr4 28825427 28825516 -173502831 - L1MB5 LINE L1 0 6180 6076 665 311 19 9 chr4 28826066 28826278 -173502069 + MIR SINE MIR 48 261 -1 210 244 0 0 chr4 28828371 28828412 -173499935 + (CA)n Simple_repeat Simple_repeat 2 42 0 218 235 0 0 chr4 28828798 28828849 -173499498 - L2 LINE L2 -7 3306 3256 347 241 53 132 chr4 28828881 28828961 -173499386 - L2 LINE L2 -173 3140 3055 1864 137 14 0 chr4 28828961 28829239 -173499108 - AluJo SINE Alu -30 282 1 347 241 53 132 chr4 28829239 28829499 -173498848 - L2 LINE L2 -258 3055 2827 244 355 0 11 chr4 28829904 28829997 -173498350 + MIR SINE MIR 14 105 -157 441 54 0 0 chr4 28829997 28830053 -173498294 + (TTCC)n Simple_repeat Simple_repeat 4 59 0 719 114 9 53 chr4 28830588 28830727 -173497620 + FLAM_C SINE Alu 13 146 0 679 168 0 47 chr4 28831278 28831427 -173496920 + AluSc SINE Alu 6 147 -162 279 79 0 0 chr4 28832119 28832157 -173496190 + (TTCC)n Simple_repeat Simple_repeat 2 39 0 1971 162 3 0 chr4 28832157 28832466 -173495881 - AluSx SINE Alu -2 310 1 274 241 203 15 chr4 28832466 28832599 -173495748 + MIR SINE MIR 92 249 -13 219 69 0 0 chr4 28833153 28833182 -173495165 + (TTCCC)n Simple_repeat Simple_repeat 1 29 0 251 346 57 31 chr4 28833313 28833472 -173494875 - MER5A DNA MER1_type -10 179 17 428 254 136 31 chr4 28833510 28833718 -173494629 + MIR SINE MIR 35 262 0 216 277 77 15 chr4 28833789 28833854 -173494493 + L2 LINE L2 3203 3271 -1 2709 93 3 6 chr4 28833971 28834336 -173494011 + THE1B LTR MaLR 1 364 0 296 328 38 8 chr4 28834439 28834570 -173493777 - L2 LINE L2 -1 3271 3137 21 36 0 0 chr4 28834963 28834991 -173493356 + AT_rich Low_complexity Low_complexity 1 28 0 2206 106 3 7 chr4 28834991 28835305 -173493042 + AluSp SINE Alu 1 313 0 295 297 26 73 chr4 28835855 28836047 -173492300 + MIR SINE MIR 68 250 -12 228 291 27 18 chr4 28836058 28836168 -173492179 - L1ME4a LINE L1 -55 6066 5956 2353 95 0 0 chr4 28836459 28836753 -173491594 - AluSg SINE Alu -16 294 1 2148 102 0 27 chr4 28837021 28837314 -173491033 - AluSx SINE Alu -5 307 23 1373 204 38 14 chr4 28837331 28837620 -173490727 - AluJo SINE Alu -11 301 6 1162 117 0 0 chr4 28837741 28837895 -173490452 - AluSg/x SINE Alu -25 287 134 183 42 0 0 chr4 28837895 28837919 -173490428 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2054 95 11 35 chr4 28837919 28838204 -173490143 - AluSx SINE Alu -28 284 7 555 292 53 5 chr4 28838348 28838557 -173489790 - L2 LINE L2 -10 3303 3085 1459 241 60 62 chr4 28838730 28839087 -173489260 + MLT1J LTR MaLR 1 359 -152 2170 109 0 7 chr4 28839087 28839400 -173488947 - AluSx SINE Alu 0 311 1 1459 241 60 62 chr4 28839400 28839539 -173488808 + MLT1J LTR MaLR 359 497 -14 869 160 23 0 chr4 28839761 28839892 -173488455 - AluJb SINE Alu -178 134 1 1911 172 0 0 chr4 28839904 28840200 -173488147 - AluSx SINE Alu -16 296 1 231 305 126 18 chr4 28840386 28840553 -173487794 + L2 LINE L2 2550 2734 -580 3603 50 9 7 chr4 28840913 28841356 -173486991 - MLT2A1 LTR ERVL 0 444 1 220 258 31 31 chr4 28841356 28841453 -173486894 + L2 LINE L2 3158 3254 -59 217 231 64 13 chr4 28841467 28841545 -173486802 - MIR SINE MIR -76 186 105 250 317 40 0 chr4 28841978 28842079 -173486268 + MIR SINE MIR 103 207 -55 392 237 273 0 chr4 28843602 28843741 -173484606 - MIR SINE MIR -2 260 84 2127 171 8 3 chr4 28843799 28844162 -173484185 + MLT1A1 LTR MaLR 1 365 0 322 105 15 59 chr4 28844341 28844436 -173483911 + AluSx SINE Alu 1 47 -256 1666 105 22 49 chr4 28844457 28844724 -173483623 + AluSx SINE Alu 42 301 -11 986 288 72 21 chr4 28844944 28845133 -173483214 - L1MC4a LINE L1 -743 5403 5677 490 112 0 101 chr4 28845133 28845222 -173483125 + MADE1 DNA Mariner 1 80 0 986 288 72 21 chr4 28845222 28845726 -173482621 - L1MC4a LINE L1 -468 5678 5201 550 298 58 5 chr4 28845741 28845946 -173482401 + MIR SINE MIR 47 262 0 683 160 23 0 chr4 28846714 28846889 -173481458 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 2283 189 70 36 chr4 28847028 28847202 -173481145 - L1MD2 LINE L1 -213 6146 5979 1537 167 14 54 chr4 28847202 28847529 -173480818 - AluJo SINE Alu 0 315 1 2283 189 70 36 chr4 28847529 28847912 -173480435 - L1MD2 LINE L1 -380 5979 5568 2077 116 3 3 chr4 28848226 28848531 -173479816 + AluSp SINE Alu 1 305 0 1738 163 10 23 chr4 28850195 28850501 -173477846 - AluJb SINE Alu -10 302 1 278 281 29 65 chr4 28851136 28851275 -173477072 + MIR SINE MIR 1 134 -128 728 290 98 25 chr4 28851599 28851916 -173476431 - LTR16B LTR ERVL 0 464 125 381 58 0 0 chr4 28852238 28852290 -173476057 + (TA)n Simple_repeat Simple_repeat 1 52 0 5355 148 26 3 chr4 28852290 28853207 -173475140 - L1MA5 LINE L1 -22 6278 5341 224 394 0 0 chr4 28853307 28853401 -173474946 - L2 LINE L2 -21 3292 3199 446 261 97 23 chr4 28853596 28853772 -173474575 - MIR SINE MIR -56 206 18 1609 135 71 7 chr4 28854245 28854531 -173473816 - L1MC3 LINE L1 -81 7704 5937 351 274 42 0 chr4 28854756 28854851 -173473496 - MIR SINE MIR -76 186 88 235 371 60 0 chr4 28854915 28855031 -173473316 + MLT1K LTR MaLR 30 152 -436 896 117 22 0 chr4 28855454 28855591 -173472756 + L1PB1 LINE L1 6012 6151 0 356 350 38 54 chr4 28855678 28855918 -173472429 - L3 LINE CR1 -1300 277 42 854 299 37 45 chr4 28856587 28856893 -173471454 - L1MC4a LINE L1 -1983 5825 5523 2314 102 0 7 chr4 28856893 28857197 -173471150 + AluSq SINE Alu 1 302 -11 854 299 37 45 chr4 28857197 28857452 -173470895 - L1MC4a LINE L1 -2285 5523 5268 2181 106 33 3 chr4 28857654 28857955 -173470392 - AluSx SINE Alu -2 310 1 785 269 13 26 chr4 28858194 28858428 -173469919 + MIR SINE MIR 1 231 -31 2413 88 3 0 chr4 28858501 28858797 -173469550 - AluSp SINE Alu -16 297 1 464 283 46 13 chr4 28859451 28859603 -173468744 + MLT1J2 LTR MaLR 11 167 -283 1843 193 26 48 chr4 28859619 28860034 -173468313 + MLT2D LTR ERVL 1 406 -8 336 269 64 64 chr4 28860079 28860235 -173468112 + MLT1J2 LTR MaLR 252 407 -43 1928 194 56 25 chr4 28860926 28861375 -173466972 + MLT1C LTR MaLR 1 463 -4 246 271 0 0 chr4 28861425 28861484 -173466863 - MIR SINE MIR -110 98 40 22 35 0 0 chr4 28862150 28862179 -173466168 + AT_rich Low_complexity Low_complexity 1 29 0 1180 277 52 54 chr4 28862246 28862747 -173465600 - LTR67 LTR ERVL 0 557 58 342 0 0 0 chr4 28862751 28862789 -173465558 + (CA)n Simple_repeat Simple_repeat 2 39 0 725 157 17 0 chr4 28864143 28864258 -173464089 - FLAM_A SINE Alu -13 129 13 750 271 135 54 chr4 28864312 28864755 -173463592 + MLT1G1 LTR MaLR 110 588 -7 424 310 51 0 chr4 28865309 28865467 -173462880 - MIR SINE MIR -74 188 23 2240 108 0 3 chr4 28865631 28865927 -173462420 + AluSp SINE Alu 1 295 -18 258 105 0 0 chr4 28865929 28865967 -173462380 + (TA)n Simple_repeat Simple_repeat 2 39 0 659 279 25 37 chr4 28865995 28866239 -173462108 + MIR SINE MIR 12 252 -10 808 169 0 0 chr4 28866807 28866943 -173461404 - MER82 DNA MER2_type -437 216 81 275 288 42 8 chr4 28866944 28867062 -173461285 + L1ME4a LINE L1 5998 6119 -2 2354 192 22 16 chr4 28867719 28868162 -173460185 + MER82 DNA MER2_type 1 446 -207 2450 204 166 41 chr4 28868162 28868896 -173459451 - LTR1B LTR ERV1 0 826 1 1099 242 5 0 chr4 28868896 28869105 -173459242 + MER82 DNA MER2_type 444 653 0 278 369 0 0 chr4 28869118 28869229 -173459118 - MIR SINE MIR -8 254 144 1119 268 74 18 chr4 28869230 28869678 -173458669 + LTR1 LTR ERV1 4 476 -309 1608 173 50 21 chr4 28869790 28870073 -173458274 - AluJb SINE Alu -17 295 5 1962 138 3 0 chr4 28870142 28870452 -173457895 - AluSx SINE Alu 0 311 1 433 339 28 6 chr4 28871288 28871468 -173456879 - MIR SINE MIR -32 230 47 2177 103 0 56 chr4 28871495 28871668 -173456679 - AluSx SINE Alu -10 302 154 2457 61 7 7 chr4 28871668 28871978 -173456369 - AluY SINE Alu -1 310 1 2177 103 0 56 chr4 28871978 28872124 -173456223 - AluSx SINE Alu -158 154 1 754 217 138 69 chr4 28872884 28873262 -173455085 + MLT1J2 LTR MaLR 47 450 0 713 236 53 49 chr4 28873742 28873988 -173454359 - L1MC/D LINE L1 -2065 5743 5497 1049 240 65 31 chr4 28873996 28874317 -173454030 - MLT1C LTR MaLR 0 467 136 256 188 0 0 chr4 28874311 28874359 -173453988 - AluJo SINE Alu -72 230 183 * 776 201 0 0 chr4 28874359 28874493 -173453854 - AluJo SINE Alu -161 151 18 354 192 26 51 chr4 28874506 28874584 -173453763 - MLT1C LTR MaLR -429 76 1 2552 139 25 23 chr4 28874648 28875080 -173453267 + Tigger2a DNA MER2_type 1 433 -1 436 278 139 20 chr4 28875091 28875386 -173452961 + L2 LINE L2 1989 2318 -996 272 146 0 0 chr4 28875386 28875427 -173452920 - MER96B DNA MER1_type? -182 235 195 812 210 6 11 chr4 28875688 28875864 -173452483 - MER96B DNA MER1_type? -242 175 1 922 300 149 18 chr4 28875864 28876697 -173451650 + L2 LINE L2 2337 3281 -32 1436 185 100 4 chr4 28876759 28876907 -173451440 - AluJo SINE Alu -16 296 164 189 0 0 0 chr4 28876907 28876928 -173451419 + (TTA)n Simple_repeat Simple_repeat 2 22 0 1436 185 100 4 chr4 28876928 28877049 -173451298 - AluJo SINE Alu -148 164 1 216 226 38 0 chr4 28877218 28877271 -173451076 + (TCTCTG)n Simple_repeat Simple_repeat 4 58 0 387 168 65 47 chr4 28877772 28877879 -173450468 - MIR SINE MIR -89 173 65 656 154 0 9 chr4 28878178 28878288 -173450059 - MLT1A1 LTR MaLR 0 365 257 461 117 0 26 chr4 28878310 28878387 -173449960 - MLT1A1 LTR MaLR -281 84 10 237 200 0 0 chr4 28878495 28878550 -173449797 - MLT2B3 LTR ERVL 0 520 466 1609 128 15 158 chr4 28878580 28878972 -173449375 + Tigger3(Golem) DNA MER2_type 11 3027 -2 2661 168 47 18 chr4 28878984 28879478 -173448869 - MLT2B3 LTR ERVL -46 508 1 3472 51 7 0 chr4 28879886 28880320 -173448027 + L1PA8 LINE L1 5727 6163 -9 2196 114 30 0 chr4 28880627 28880924 -173447423 + AluSx SINE Alu 3 308 -4 212 380 20 20 chr4 28881545 28881645 -173446702 + L2 LINE L2 3179 3278 -35 444 223 17 109 chr4 28882259 28882434 -173445913 + MER5B DNA MER1_type 20 178 0 4561 123 14 46 chr4 28882719 28882845 -173445502 - L1PA15 LINE L1 -40 6125 5996 14517 137 14 5 chr4 28882845 28886088 -173442259 - L1PA10 LINE L1 -11 6157 2886 4561 123 14 46 chr4 28886088 28886773 -173441574 - L1PA15 LINE L1 -169 5996 5340 * 5309 179 13 6 chr4 28886771 28887812 -173440535 - L1PA15 LINE L1 -1485 4661 3613 1865 212 46 48 chr4 28888563 28889214 -173439133 - Charlie7 DNA MER1_type -3 2609 1960 348 290 31 0 chr4 28889274 28889436 -173438911 - Charlie7 DNA MER1_type -648 1964 1798 324 43 0 0 chr4 28889437 28889483 -173438864 + MADE1 DNA Mariner 1 46 -34 247 233 14 0 chr4 28889506 28889579 -173438768 - Charlie7 DNA MER1_type -823 1789 1716 29204 112 14 56 chr4 28889580 28896010 -173432337 - L1PA7 LINE L1 -1 6153 1 446 212 75 14 chr4 28896018 28896164 -173432183 - Charlie7 DNA MER1_type -899 1713 1559 905 154 48 5 chr4 28896756 28897053 -173431294 - THE1B LTR MaLR 0 364 1 1077 264 25 43 chr4 28897104 28897592 -173430755 - Charlie7 DNA MER1_type -1374 1238 760 4662 196 24 7 chr4 28897625 28898312 -173430035 - L1MB3 LINE L1 -2 6417 5743 306 0 0 0 chr4 28898312 28898346 -173430001 + (TG)n Simple_repeat Simple_repeat 1 34 0 4662 196 24 7 chr4 28898346 28899647 -173428700 - L1MB3 LINE L1 -676 5743 4392 257 292 75 13 chr4 28899671 28899979 -173428368 + L1M4 LINE L1 3168 3494 -2652 240 100 0 0 chr4 28900336 28900376 -173427971 + (CA)n Simple_repeat Simple_repeat 2 41 0 5777 206 41 37 chr4 28900399 28901650 -173426697 - L1MB3 LINE L1 -1966 4416 3171 1612 154 54 18 chr4 28901650 28901929 -173426418 + AluJo SINE Alu 1 289 -23 5777 206 41 37 chr4 28901929 28903259 -173425088 - L1MB3 LINE L1 -3211 3171 1735 1107 141 58 0 chr4 28903254 28903445 -173424902 - L1MB3 LINE L1 -6159 225 24 * 748 306 70 16 chr4 28903445 28903942 -173424405 - Charlie7 DNA MER1_type -1876 736 213 2647 72 3 6 chr4 28904013 28904362 -173423985 + THE1B LTR MaLR 17 364 0 1810 164 7 4 chr4 28904530 28904834 -173423513 + AluJo SINE Alu 1 305 0 208 341 22 0 chr4 28906082 28906173 -173422174 - MIR3 SINE MIR -5 203 111 2071 135 10 0 chr4 28906470 28906766 -173421581 - AluSg SINE Alu -11 299 1 1636 152 52 38 chr4 28906952 28907241 -173421106 - AluJb SINE Alu -19 293 1 371 246 174 36 chr4 28907241 28907398 -173420949 - MIR3 SINE MIR -8 200 17 2455 63 0 0 chr4 28908480 28908782 -173419565 - AluY SINE Alu -9 302 1 479 296 87 45 chr4 28909086 28909350 -173418997 + L2 LINE L2 3024 3298 -15 241 296 204 0 chr4 28909783 28909871 -173418476 + MIR SINE MIR 32 137 -71 1715 213 25 3 chr4 28909871 28910228 -173418119 - MLT1A1 LTR MaLR 0 365 1 1668 226 37 3 chr4 28910730 28911107 -173417240 + MLT1B LTR MaLR 1 390 0 2090 152 69 12 chr4 28911208 28911630 -173416717 + L1MA6 LINE L1 5679 6124 -176 2728 126 5 0 chr4 28911641 28912046 -173416301 - L1PB1 LINE L1 -3 6148 5742 838 158 33 11 chr4 28912046 28912228 -173416119 + L1MA6 LINE L1 6110 6297 -3 27 0 0 0 chr4 28912228 28912255 -173416092 + AT_rich Low_complexity Low_complexity 1 27 0 281 230 0 27 chr4 28912680 28912754 -173415593 + LTR33A LTR ERVL 452 523 0 203 285 145 89 chr4 28912835 28913014 -173415333 - MER5A DNA MER1_type 0 189 1 695 296 6 0 chr4 28913019 28913198 -173415149 - MIR SINE MIR -10 252 73 1573 144 186 55 chr4 28913210 28913287 -173415060 - MSTB1 LTR MaLR 0 432 366 2137 117 7 0 chr4 28913287 28913578 -173414769 + AluSq SINE Alu 1 293 -20 1573 144 186 55 chr4 28913578 28913882 -173414465 - MSTB1 LTR MaLR -66 366 1 315 229 100 50 chr4 28914738 28914878 -173413469 + MIR SINE MIR 55 201 -61 192 97 0 0 chr4 28914913 28914944 -173413403 + (GAAAA)n Simple_repeat Simple_repeat 2 32 0 213 348 11 22 chr4 28914972 28915064 -173413283 + MIR SINE MIR 16 106 -102 27 29 0 0 chr4 28915163 28915197 -173413150 + AT_rich Low_complexity Low_complexity 1 34 0 2495 172 15 17 chr4 28915887 28916306 -173412041 + MLT2C2 LTR ERVL 1 420 -44 360 43 0 0 chr4 28916306 28916352 -173411995 + (TG)n Simple_repeat Simple_repeat 2 47 0 2495 172 15 17 chr4 28916352 28916397 -173411950 + MLT2C2 LTR ERVL 420 464 0 790 209 15 15 chr4 28916587 28916788 -173411559 - LTR16C LTR ERVL -6 485 285 198 0 0 0 chr4 28917599 28917621 -173410726 + (GA)n Simple_repeat Simple_repeat 2 23 0 803 249 85 41 chr4 28918355 28918516 -173409831 + MLT1L LTR MaLR 111 264 -351 2379 84 3 6 chr4 28918516 28918849 -173409498 - L1PA8 LINE L1 -2 6170 5839 803 249 85 41 chr4 28918849 28919077 -173409270 + MLT1L LTR MaLR 264 581 -34 2997 56 13 8 chr4 28920237 28920630 -173407717 - L1PA8 LINE L1 -6 6166 5772 29 0 0 0 chr4 28921221 28921250 -173407097 + AT_rich Low_complexity Low_complexity 1 29 0 393 286 20 0 chr4 28921948 28922046 -173406301 + MER5A DNA MER1_type 10 109 -80 205 185 56 0 chr4 28922402 28922456 -173405891 + (TGAA)n Simple_repeat Simple_repeat 1 57 0 252 260 135 29 chr4 28922643 28922747 -173405600 - MIR SINE MIR -33 229 115 357 17 34 34 chr4 28923436 28923495 -173404852 + (CAAAAA)n Simple_repeat Simple_repeat 2 60 0 4016 214 65 37 chr4 28923883 28924615 -173403732 - L1ME1 LINE L1 -224 6737 6027 2092 130 0 3 chr4 28924615 28924908 -173403439 - AluSx SINE Alu -20 292 1 4016 214 65 37 chr4 28924908 28926319 -173402028 - L1ME1 LINE L1 -934 6027 4658 2043 148 3 0 chr4 28926319 28926617 -173401730 + AluJb SINE Alu 1 299 -13 4016 214 65 37 chr4 28926617 28927045 -173401302 - L1ME1 LINE L1 -2303 4658 4244 2459 82 0 0 chr4 28927045 28927348 -173400999 - AluY SINE Alu -8 303 1 4016 214 65 37 chr4 28927348 28927941 -173400406 - L1ME1 LINE L1 -2717 4244 3386 2726 265 92 51 chr4 28927940 28928054 -173400293 - L1ME1 LINE L1 -5202 1221 1113 * 1898 121 0 0 chr4 28928054 28928303 -173400044 + AluSx SINE Alu 39 287 -25 207 0 0 0 chr4 28928307 28928330 -173400017 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2726 265 92 51 chr4 28928330 28929368 -173398979 - L1ME1 LINE L1 -5312 1111 17 693 204 55 41 chr4 28929400 28929620 -173398727 - L1M4 LINE L1 -2428 3718 3496 1529 160 61 77 chr4 28929632 28929835 -173398512 - L1MC2 LINE L1 -38 6306 6110 506 225 0 36 chr4 28929835 28929973 -173398374 - FLAM_A SINE Alu 0 133 1 1529 160 61 77 chr4 28929973 28930144 -173398203 - L1MC2 LINE L1 -234 6110 5938 324 313 81 25 chr4 28930360 28930558 -173397789 - L1MC2 LINE L1 -23 6390 6182 635 162 0 44 chr4 28930571 28930707 -173397640 - FLAM_A SINE Alu 0 142 13 2136 157 32 20 chr4 28930721 28931123 -173397224 - L1MC2 LINE L1 -238 6175 5769 810 102 8 0 chr4 28931145 28931263 -173397084 + LTR15 LTR ERV1 1 119 -374 18552 31 1 1 chr4 28931263 28934198 -173394149 + L1PA4 LINE L1 3146 6080 -75 2605 77 32 13 chr4 28934217 28934594 -173393753 + LTR15 LTR ERV1 104 487 -6 338 139 0 42 chr4 28934587 28934659 -173393688 + AluSc SINE Alu 231 299 0 * 2497 164 48 44 chr4 28934660 28935694 -173392653 - L1MC2 LINE L1 -637 5776 4747 26 0 0 0 chr4 28935710 28935736 -173392611 + AT_rich Low_complexity Low_complexity 1 26 0 1971 141 0 0 chr4 28935736 28936026 -173392321 - AluSx SINE Alu -22 290 1 2674 274 80 20 chr4 28936040 28936225 -173392122 - L1MC2 LINE L1 -2669 3546 3373 297 0 0 0 chr4 28936225 28936258 -173392089 + (TG)n Simple_repeat Simple_repeat 1 33 0 2674 274 80 20 chr4 28936258 28937262 -173391085 - L1MC2 LINE L1 -2842 3373 2286 968 83 8 0 chr4 28937301 28937433 -173390914 - AluSq/x SINE Alu -179 133 1 587 258 115 85 chr4 28937451 28937851 -173390496 - L1MC2 LINE L1 -4105 2291 1880 866 200 77 91 chr4 28937958 28938163 -173390184 - MER46C DNA MER2_type -3 335 135 2398 63 0 0 chr4 28938163 28938463 -173389884 - AluY SINE Alu -11 300 1 866 200 77 91 chr4 28938463 28938597 -173389750 - MER46C DNA MER2_type -203 135 1 245 231 10 39 chr4 28938645 28938749 -173389598 + GA-rich Low_complexity Low_complexity 2 102 0 2094 121 3 19 chr4 28939433 28939748 -173388599 + AluSx SINE Alu 1 310 -2 235 130 37 0 chr4 28940873 28940927 -173387420 + (TA)n Simple_repeat Simple_repeat 1 56 0 1294 174 17 14 chr4 28940941 28941203 -173387144 - L1MB3 LINE L1 -164 6019 5756 256 279 115 39 chr4 28941892 28941996 -173386351 - L2 LINE L2 -13 3300 3189 4944 197 72 30 chr4 28941996 28942202 -173386145 + Charlie1a DNA MER1_type 1 197 -2564 2416 78 3 0 chr4 28942202 28942509 -173385838 - AluY SINE Alu -3 308 1 4944 197 72 30 chr4 28942509 28943554 -173384793 + Charlie1a DNA MER1_type 197 1305 -150 2026 159 17 0 chr4 28943566 28943912 -173384435 - L1MB3 LINE L1 -9 6174 5823 698 69 0 0 chr4 28943912 28944013 -173384334 - AluY SINE Alu -1 310 210 210 37 0 0 chr4 28944039 28944066 -173384281 + (TAA)n Simple_repeat Simple_repeat 2 28 0 596 173 53 23 chr4 28944066 28944199 -173384148 - L1MB3 LINE L1 -475 5708 5572 7193 35 0 1 chr4 28944207 28945067 -173383280 - L1PA3 LINE L1 0 6155 5297 418 186 52 0 chr4 28945083 28945180 -173383167 + Charlie1a DNA MER1_type 1304 1405 -50 558 196 0 0 chr4 28945180 28945282 -173383065 - FLAM_A SINE Alu -20 122 21 268 128 85 0 chr4 28945310 28945357 -173382990 + Charlie1a DNA MER1_type 1396 1446 -9 495 314 54 74 chr4 28945430 28945891 -173382456 + L3 LINE CR1 1118 1569 -8 338 333 120 0 chr4 28946579 28946729 -173381618 - MIR SINE MIR -73 189 22 25 0 0 0 chr4 28946796 28946821 -173381526 + AT_rich Low_complexity Low_complexity 1 25 0 2202 46 8 29 chr4 28948004 28948377 -173379970 + L1PA4 LINE L1 5663 6152 -3 679 235 23 86 chr4 28948958 28949260 -173379087 - L2 LINE L2 -1 3312 3030 207 319 75 11 chr4 28949229 28949323 -173379024 - L2 LINE L2 -661 2653 2554 * 5342 94 20 3 chr4 28949607 28950373 -173377974 - L1PA15 LINE L1 0 6165 5387 1551 230 50 45 chr4 28950449 28950988 -173377359 - L1MC5 LINE L1 -430 7531 6990 222 335 54 38 chr4 28951460 28951645 -173376702 - L2 LINE L2 -813 2501 2314 21 0 0 0 chr4 28952301 28952322 -173376025 + AT_rich Low_complexity Low_complexity 1 21 0 1539 71 5 0 chr4 28952473 28952669 -173375678 - MER107 DNA MER1_type 0 197 1 1931 149 0 3 chr4 28953835 28954136 -173374211 - AluSx SINE Alu -12 300 1 466 257 46 0 chr4 28954480 28954589 -173373758 - L2 LINE L2 -14 3299 3186 531 213 77 30 chr4 28956040 28956183 -173372164 - MIR SINE MIR 0 262 113 1391 181 211 18 chr4 28956186 28956518 -173371829 - MSTD LTR MaLR 0 396 1 353 337 32 0 chr4 28956523 28956618 -173371729 - MIR SINE MIR -155 107 10 654 363 67 38 chr4 28957264 28957793 -173370554 - L2 LINE L2 -22 3250 2701 349 272 29 48 chr4 28957789 28957892 -173370455 - L2 LINE L2 -1 3271 3171 * 185 333 11 33 chr4 28957915 28958005 -173370342 - L2 LINE L2 -661 2653 2566 367 179 179 9 chr4 28958120 28958226 -173370121 + L2 LINE L2 3190 3313 0 2289 93 0 3 chr4 28958362 28958663 -173369684 - AluY SINE Alu -11 300 1 1016 301 108 12 chr4 28959196 28959602 -173368745 + L2 LINE L2 2820 3264 -49 238 152 43 0 chr4 28960653 28960699 -173367648 - L1MC5 LINE L1 -89 7872 7825 22 0 0 0 chr4 28960772 28960794 -173367553 + AT_rich Low_complexity Low_complexity 1 22 0 3480 38 0 2 chr4 28960983 28961408 -173366939 + L1PA4 LINE L1 5724 6147 -8 1308 195 73 34 chr4 28961699 28962027 -173366320 + MER58B DNA MER1_type 1 341 0 252 340 150 0 chr4 28962027 28962127 -173366220 + L2 LINE L2 3148 3262 -10 180 152 0 0 chr4 28962933 28962966 -173365381 + (ATG)n Simple_repeat Simple_repeat 1 33 0 652 124 0 0 chr4 28963531 28963628 -173364719 - AluSg/x SINE Alu -8 301 205 313 116 0 0 chr4 28963628 28963687 -173364660 - Alu SINE Alu -261 40 1 190 315 0 0 chr4 28963759 28963813 -173364534 + L2 LINE L2 3211 3264 -8 229 383 74 40 chr4 28963857 28964032 -173364315 - L2 LINE L2 -4 3268 3088 3376 126 39 14 chr4 28964528 28965098 -173363249 - L1MC3 LINE L1 -13 7772 7189 396 264 0 0 chr4 28965098 28965189 -173363158 - MLT1F1 LTR MaLR -442 125 35 800 115 64 13 chr4 28965189 28965346 -173363001 - L1MC3 LINE L1 -688 7097 6933 493 206 11 0 chr4 28965347 28965439 -173362908 - MER103 DNA DNA -72 94 2 490 257 251 5 chr4 28965551 28965738 -173362609 - MIR SINE MIR 0 262 30 370 81 54 0 chr4 28965973 28966047 -173362300 + T-rich Low_complexity Low_complexity 2 79 0 7691 20 5 0 chr4 28966050 28967604 -173360743 - L1PA3 LINE L1 -3 6152 4595 4558 19 0 0 chr4 28967604 28968129 -173360218 + L1PA3 LINE L1 4077 4601 -1545 337 332 61 89 chr4 28968321 28968682 -173359665 + L2 LINE L2 2922 3272 0 628 269 141 29 chr4 28968708 28969091 -173359256 + L1ME4a LINE L1 5597 6022 -99 354 290 63 63 chr4 28969768 28969975 -173358372 - L3 LINE CR1 -74 1503 1297 196 268 174 58 chr4 28970504 28970642 -173357705 + L2 LINE L2 3160 3313 0 256 247 94 0 chr4 28970897 28970982 -173357365 + MIR SINE MIR 122 214 -48 16502 136 14 18 chr4 28971359 28974087 -173354260 - Tigger2 DNA MER2_type 0 2718 2 189 229 0 0 chr4 28974836 28974871 -173353476 - L2 LINE L2 -18 3295 3261 223 257 0 140 chr4 28974884 28975020 -173353327 - L2 LINE L2 -164 3108 2992 383 318 0 16 chr4 28975136 28975265 -173353082 - MIR SINE MIR 0 262 136 826 231 68 81 chr4 28975486 28975930 -173352417 + L1MC4 LINE L1 7321 7854 -188 455 311 62 10 chr4 28976039 28976248 -173352099 + L2 LINE L2 3094 3313 0 2078 96 4 4 chr4 28976529 28976831 -173351516 - AluY SINE Alu 0 302 1 1684 165 3 38 chr4 28978204 28978519 -173349828 - AluJo SINE Alu -8 304 1 25 31 0 0 chr4 28978544 28978576 -173349771 + AT_rich Low_complexity Low_complexity 1 32 0 21 82 0 0 chr4 28978685 28978734 -173349613 + AT_rich Low_complexity Low_complexity 1 49 0 189 162 0 0 chr4 28979419 28979456 -173348891 - L2 LINE L2 -310 2962 2926 224 323 135 0 chr4 28979463 28979559 -173348788 - L2 LINE L2 -580 2734 2626 32413 89 8 9 chr4 28979598 28984163 -173344184 + L1PA6 LINE L1 11 4571 -1575 6745 61 48 16 chr4 28984163 28985001 -173343346 + L1PA6 LINE L1 4489 5299 -855 2811 3 0 0 chr4 28985001 28985304 -173343043 + AluYa5 SINE Alu 1 303 -8 6745 61 48 16 chr4 28985304 28986102 -173342245 + L1PA6 LINE L1 5299 6154 0 550 365 93 3 chr4 28986193 28986503 -173341844 - L2 LINE L2 -691 2623 2286 942 303 152 14 chr4 28986526 28987191 -173341156 + L2 LINE L2 2464 3242 -71 233 203 141 0 chr4 28987669 28987733 -173340614 + L2 LINE L2 3226 3298 -15 234 62 0 0 chr4 28987735 28987767 -173340580 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 21 57 0 0 chr4 28988307 28988342 -173340005 + AT_rich Low_complexity Low_complexity 1 35 0 1679 153 20 35 chr4 28988506 28988852 -173339495 - L1MB8 LINE L1 -1 6177 5837 14392 92 10 2 chr4 28988871 28991545 -173336802 - L1PA4 LINE L1 0 6155 3465 1130 50 7 0 chr4 28991545 28991684 -173336663 - BC200 scRNA scRNA -60 140 1 26975 64 1 2 chr4 28991684 28995164 -173333183 - L1PA4 LINE L1 -2669 3477 1 30 0 0 0 chr4 28995208 28995238 -173333109 + AT_rich Low_complexity Low_complexity 1 30 0 380 268 98 68 chr4 28995415 28995680 -173332667 - L1ME4a LINE L1 -239 5882 5610 1951 143 3 3 chr4 28995707 28996000 -173332347 - AluSx SINE Alu -17 295 3 815 90 8 0 chr4 28996102 28996224 -173332123 + (TTC)n Simple_repeat Simple_repeat 1 123 0 9341 81 5 1 chr4 28996229 28998285 -173330062 - L1PA7 LINE L1 0 6154 4094 21 71 0 0 chr4 28999168 28999210 -173329137 + AT_rich Low_complexity Low_complexity 1 42 0 795 201 5 62 chr4 28999597 28999791 -173328556 + LTR41 LTR ERVL 3 185 -588 257 230 158 43 chr4 28999913 29000052 -173328295 + LTR50 LTR ERVL 488 642 -153 797 297 122 55 chr4 29000108 29000747 -173327600 + HAL1 LINE L1 237 918 -1589 2416 240 152 39 chr4 29001350 29002566 -173325781 + HAL1 LINE L1 945 2298 -209 268 333 37 100 chr4 29003163 29003433 -173324914 - L2 LINE L2 -16 3256 3004 2336 94 0 9 chr4 29003787 29004116 -173324231 - LTR17 LTR ERV1 -454 326 1 1623 65 0 0 chr4 29004116 29004316 -173324031 - HERV17 LTR ERV1 0 8626 8427 21 0 0 0 chr4 29004621 29004642 -173323705 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr4 29005230 29005263 -173323084 + AT_rich Low_complexity Low_complexity 1 33 0 498 311 45 0 chr4 29006078 29006210 -173322137 + MIR SINE MIR 16 153 -55 2161 247 58 50 chr4 29006359 29007120 -173321227 - L1ME3A LINE L1 0 6170 5398 633 169 99 16 chr4 29007123 29007279 -173321068 - MIR SINE MIR -94 114 1 25 83 0 0 chr4 29007286 29007346 -173321001 + AT_rich Low_complexity Low_complexity 1 60 0 228 289 26 70 chr4 29007530 29007644 -173320703 - L2 LINE L2 0 3272 3164 330 26 0 0 chr4 29008126 29008165 -173320182 + (CA)n Simple_repeat Simple_repeat 2 40 0 236 247 56 34 chr4 29008428 29008517 -173319830 - MER103 DNA DNA -9 157 67 247 164 16 16 chr4 29009332 29009393 -173318954 + (TA)n Simple_repeat Simple_repeat 2 62 0 3208 219 64 21 chr4 29009701 29010710 -173317637 - L1ME3A LINE L1 0 6170 5125 29 0 0 0 chr4 29011262 29011291 -173317056 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chr4 29011940 29011975 -173316372 + AT_rich Low_complexity Low_complexity 1 35 0 208 174 0 22 chr4 29012146 29012192 -173316155 + T-rich Low_complexity Low_complexity 4 48 0 189 0 0 0 chr4 29012568 29012589 -173315758 + (TA)n Simple_repeat Simple_repeat 2 22 0 * 315 0 0 0 chr4 29012588 29012623 -173315724 + (CA)n Simple_repeat Simple_repeat 2 36 0 555 293 50 37 chr4 29013699 29013941 -173314406 + MIR SINE MIR 7 251 -11 35 71 0 0 chr4 29013974 29014044 -173314303 + AT_rich Low_complexity Low_complexity 1 70 0 23 0 0 0 chr4 29015164 29015187 -173313160 + AT_rich Low_complexity Low_complexity 1 23 0 299 360 126 9 chr4 29015317 29015539 -173312808 + L2 LINE L2 1233 1480 -1834 2005 136 7 3 chr4 29015583 29015885 -173312462 + AluSx SINE Alu 1 303 -9 191 363 12 25 chr4 29016861 29016941 -173311406 + MIR SINE MIR 2 80 -182 1840 146 35 0 chr4 29018000 29018171 -173310176 - AluSx SINE Alu -14 298 112 414 0 0 0 chr4 29018171 29018217 -173310130 + (TTA)n Simple_repeat Simple_repeat 2 47 0 1840 146 35 0 chr4 29018217 29018333 -173310014 - AluSx SINE Alu -200 112 1 246 109 455 0 chr4 29018722 29018777 -173309570 + MADE1 DNA Mariner 1 80 0 1645 153 68 36 chr4 29018984 29019349 -173308998 - LTR36 LTR ERV1 -234 377 1 370 333 8 0 chr4 29019376 29019499 -173308848 + Tigger8 DNA MER2_type 530 653 -13 198 300 14 29 chr4 29020593 29020663 -173307684 + MIR SINE MIR 20 88 -120 226 235 123 0 chr4 29020853 29020934 -173307413 + MIR3 SINE MIR 102 192 -16 22 35 0 0 chr4 29121388 29121417 -173206930 + AT_rich Low_complexity Low_complexity 1 29 0 184 241 167 0 chr4 29121942 29121996 -173206351 - MER5C DNA MER1_type -1 323 261 197 380 13 0 chr4 29122132 29122211 -173206136 - MIR SINE MIR -62 146 74 900 90 0 16 chr4 29122689 29122811 -173205536 - FRAM SINE Alu -14 162 43 591 288 33 0 chr4 29123062 29123215 -173205132 + MIR SINE MIR 37 194 -68 1694 163 31 31 chr4 29123235 29123555 -173204792 + MER2 DNA MER2_type 1 320 -25 758 240 153 100 chr4 29125235 29125856 -173202491 + L2 LINE L2 2574 3248 -65 302 205 12 0 chr4 29126557 29126640 -173201707 + (TATG)n Simple_repeat Simple_repeat 3 86 0 246 172 0 212 chr4 29126694 29126793 -173201554 + L2 LINE L2 3235 3312 -1 1440 121 5 5 chr4 29127025 29127240 -173201107 + AluSx SINE Alu 1 215 -97 1497 183 49 14 chr4 29128008 29128293 -173200054 - AluJo SINE Alu -17 295 1 189 403 0 0 chr4 29128367 29128429 -173199918 + MIR SINE MIR 40 101 -161 489 47 0 0 chr4 29128802 29128866 -173199481 + (TG)n Simple_repeat Simple_repeat 2 65 0 200 346 77 31 chr4 29129277 29129407 -173198940 + L3b LINE CR1 1183 1318 -265 21 0 0 0 chr4 29129490 29129511 -173198836 + AT_rich Low_complexity Low_complexity 1 21 0 242 206 48 16 chr4 29130181 29130244 -173198103 + MIR SINE MIR 105 169 -93 244 361 69 28 chr4 29130891 29131035 -173197312 - L2 LINE L2 -4 3268 3119 211 150 25 0 chr4 29132944 29132984 -173195363 + (TA)n Simple_repeat Simple_repeat 1 41 0 1207 189 43 4 chr4 29134189 29134422 -173193925 + AluJb SINE Alu 50 291 -21 2460 121 56 16 chr4 29134516 29134947 -173193400 + L1MB3 LINE L1 5728 6175 -8 206 211 0 0 chr4 29135162 29135200 -173193147 - L2 LINE L2 -8 3305 3268 783 213 23 6 chr4 29136266 29136440 -173191907 - Charlie1 DNA MER1_type -197 2564 2388 432 55 0 0 chr4 29136442 29136497 -173191850 + (TA)n Simple_repeat Simple_repeat 1 55 0 37384 85 9 7 chr4 29136497 29142620 -173185727 - L1PA6 LINE L1 -7 6147 11 180 0 0 0 chr4 29142625 29142645 -173185702 + (T)n Simple_repeat Simple_repeat 1 20 0 1936 118 15 0 chr4 29142790 29143062 -173185285 + AluSx SINE Alu 23 298 -14 1106 285 203 50 chr4 29143084 29144464 -173183883 - L2 LINE L2 -43 3270 1686 421 151 9 9 chr4 29144472 29144578 -173183769 + (TA)n Simple_repeat Simple_repeat 2 107 0 811 149 0 8 chr4 29146172 29146306 -173182041 - FLAM_C SINE Alu 0 133 1 259 86 0 0 chr4 29147177 29147212 -173181135 - L1MC4a LINE L1 -980 6828 6794 740 263 61 49 chr4 29147329 29147576 -173180771 + MIR SINE MIR 13 262 0 317 287 0 3 chr4 29147696 29147796 -173180551 - L1MC4 LINE L1 0 8042 7898 1602 246 82 34 chr4 29147815 29148401 -173179946 - L1MC4 LINE L1 -323 7719 7106 477 216 60 9 chr4 29148549 29148665 -173179682 - L1MC4 LINE L1 -995 7047 6926 1609 194 42 52 chr4 29148782 29149185 -173179162 - L1MC4a LINE L1 -968 6840 6442 207 377 14 0 chr4 29150487 29150556 -173177791 - L2 LINE L2 -20 3252 3183 2084 105 0 29 chr4 29150602 29150908 -173177439 - AluSx SINE Alu -15 297 1 21 82 0 0 chr4 29151492 29151541 -173176806 + AT_rich Low_complexity Low_complexity 1 49 0 21 36 0 0 chr4 29151788 29151816 -173176531 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr4 29152028 29152050 -173176297 + AT_rich Low_complexity Low_complexity 1 22 0 716 280 28 36 chr4 29152268 29152518 -173175829 + MIR SINE MIR 15 262 0 395 276 71 12 chr4 29154171 29154341 -173174006 + MIR SINE MIR 28 207 -55 309 342 48 80 chr4 29154383 29154696 -173173651 - L2 LINE L2 -45 3227 2925 234 344 189 28 chr4 29154812 29155024 -173173323 + MIR SINE MIR 9 254 -8 1915 149 0 0 chr4 29155195 29155477 -173172870 - AluSx SINE Alu -30 282 1 8514 145 30 5 chr4 29155533 29157961 -173170386 + L1MA4 LINE L1 3816 6300 0 186 236 91 18 chr4 29158002 29158057 -173170290 - MIR SINE MIR -129 79 21 270 141 16 0 chr4 29158325 29158385 -173169962 + L1PB3 LINE L1 6082 6147 -7 303 357 175 11 chr4 29158501 29158675 -173169672 - L2 LINE L2 -7 3306 3162 534 161 205 18 chr4 29158675 29158787 -173169560 + FLAM_C SINE Alu 1 133 0 303 357 175 11 chr4 29158787 29158990 -173169357 - L2 LINE L2 -151 3162 2867 761 285 102 70 chr4 29160299 29160772 -173167575 + L2 LINE L2 2160 2647 -667 388 288 219 45 chr4 29160924 29161257 -173167090 + L2 LINE L2 2883 3273 -40 22 35 0 0 chr4 29162161 29162190 -173166157 + AT_rich Low_complexity Low_complexity 1 29 0 403 250 84 32 chr4 29162219 29162380 -173165967 - MIR SINE MIR -50 212 43 35 41 0 0 chr4 29162470 29162519 -173165828 + AT_rich Low_complexity Low_complexity 1 49 0 21 36 0 0 chr4 29162940 29162968 -173165379 + AT_rich Low_complexity Low_complexity 1 28 0 358 259 93 46 chr4 29163897 29164005 -173164342 - L2 LINE L2 0 3272 3160 542 259 120 6 chr4 29164191 29164349 -173163998 + MIR SINE MIR 12 187 -75 2296 72 0 7 chr4 29164873 29165165 -173163182 + AluSc SINE Alu 1 290 -19 24 77 0 0 chr4 29165397 29165449 -173162898 + AT_rich Low_complexity Low_complexity 1 52 0 568 221 97 45 chr4 29167813 29167967 -173160380 - MER20 DNA MER1_type -57 162 1 1099 187 114 35 chr4 29169893 29170182 -173158165 - MLT1D LTR MaLR 0 505 194 289 318 9 28 chr4 29170185 29170292 -173158055 - MIR SINE MIR -68 140 36 510 245 127 63 chr4 29171070 29171307 -173157040 - MIR SINE MIR 0 262 11 299 67 0 0 chr4 29173559 29173604 -173154743 - AluSc SINE Alu -4 295 251 200 184 20 0 chr4 29173723 29173772 -173154575 + CT-rich Low_complexity Low_complexity 2 51 0 22 56 0 0 chr4 29174837 29174873 -173153474 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr4 29175441 29175464 -173152883 + AT_rich Low_complexity Low_complexity 1 23 0 211 276 77 74 chr4 29175714 29175831 -173152516 + MIR SINE MIR 4 117 -91 2169 99 20 0 chr4 29176412 29176706 -173151641 + AluSg SINE Alu 1 300 -10 487 299 97 21 chr4 29177638 29178016 -173150331 - L1ME LINE L1 -426 5736 5334 314 313 175 21 chr4 29178176 29178604 -173149743 - L1ME LINE L1 -1096 5050 4557 579 300 90 40 chr4 29178891 29179387 -173148960 - L1ME LINE L1 -1983 4163 3621 1822 137 29 44 chr4 29179387 29179729 -173148618 + MER44D DNA MER2_type 2 608 -1 579 300 90 40 chr4 29179729 29179749 -173148598 - L1ME LINE L1 -2525 3621 3603 492 283 64 72 chr4 29179777 29180028 -173148319 + MIR SINE MIR 2 250 -12 829 269 123 53 chr4 29180194 29181427 -173146920 - L1ME LINE L1 -2715 3431 2114 1096 274 95 75 chr4 29181710 29183001 -173145346 - L1MEd LINE L1 -833 1657 282 203 396 86 30 chr4 29183053 29183356 -173144991 - L2 LINE L2 -2701 613 294 2644 205 43 25 chr4 29184317 29184922 -173143425 - MLT1E3 LTR MaLR -8 616 1 250 56 0 0 chr4 29185925 29185961 -173142386 - Alu SINE Alu -6 295 260 516 349 29 11 chr4 29186221 29186396 -173141951 - MIR3 SINE MIR -17 191 14 883 284 159 22 chr4 29187379 29188101 -173140246 - L2 LINE L2 0 3313 2486 749 240 104 37 chr4 29191588 29191963 -173136384 - L1ME4a LINE L1 -3 6118 5719 805 162 78 22 chr4 29191981 29192160 -173136187 - MIR SINE MIR -11 251 63 357 320 64 0 chr4 29192855 29192980 -173135367 - L2 LINE L2 -1 3312 3180 224 299 154 13 chr4 29194772 29195000 -173133347 + L2 LINE L2 2799 3084 -188 998 156 22 127 chr4 29195035 29195230 -173133117 - AluJb SINE Alu -2 310 151 2065 88 19 53 chr4 29195230 29195550 -173132797 - AluSx SINE Alu -3 309 1 998 156 22 127 chr4 29195550 29195630 -173132717 - AluJb SINE Alu -161 151 64 220 250 204 64 chr4 29195647 29195819 -173132528 + L2 LINE L2 3118 3313 0 190 220 77 88 chr4 29196425 29196516 -173131831 - L2 LINE L2 -783 2531 2442 305 279 71 123 chr4 29196574 29196900 -173131447 - MLT1J LTR MaLR -202 309 1 195 222 0 0 chr4 29196957 29197002 -173131345 + (TG)n Simple_repeat Simple_repeat 1 45 0 820 253 112 37 chr4 29197050 29197398 -173130949 - L2 LINE L2 -15 3298 2925 450 319 64 10 chr4 29197656 29197860 -173130487 + MIR SINE MIR 12 226 -36 2191 60 70 3 chr4 29198295 29198580 -173129767 - AluY SINE Alu -7 304 1 458 255 92 119 chr4 29199250 29199662 -173128685 - LTR37B LTR ERV1 -63 405 5 14939 148 46 17 chr4 29200171 29201552 -173126795 - L1PB1 LINE L1 -1 6866 5527 1840 133 21 0 chr4 29201552 29201882 -173126465 - AluSq SINE Alu 0 336 1 14939 148 46 17 chr4 29201882 29206044 -173122303 - L1PB1 LINE L1 -1340 5527 1034 2444 68 0 0 chr4 29206044 29206340 -173122007 - AluY SINE Alu -15 296 1 14939 148 46 17 chr4 29206340 29207405 -173120942 - L1PB1 LINE L1 -5833 1034 1 286 288 44 84 chr4 29207712 29207938 -173120409 - MER31-int LTR ERV1 -881 4055 3839 239 116 116 0 chr4 29208227 29208247 -173120100 - MER58A DNA MER1_type -2196 224 208 1962 27 0 0 chr4 29208247 29208466 -173119881 - L1PA3 LINE L1 0 6155 5937 239 116 116 0 chr4 29208466 29208488 -173119859 - MER58A DNA MER1_type -2212 208 177 993 84 0 0 chr4 29208491 29208622 -173119725 - AluSc SINE Alu -9 300 170 489 83 0 0 chr4 29208622 29208682 -173119665 - AluSc SINE Alu -108 201 142 479 285 38 54 chr4 29208682 29208868 -173119479 - MER58A DNA MER1_type -40 184 2 398 276 40 102 chr4 29210243 29210468 -173117879 + MER58C DNA MER1_type 5 215 0 1420 269 70 85 chr4 29210559 29211712 -173116635 + L1MEc LINE L1 714 1849 -4547 785 162 0 0 chr4 29211768 29211879 -173116468 - FLAM_C SINE Alu -31 112 2 1152 287 54 29 chr4 29211884 29212222 -173116125 + L1MEc LINE L1 1836 2164 -4051 1992 112 79 0 chr4 29212222 29212500 -173115847 + AluSg SINE Alu 1 300 -10 1152 287 54 29 chr4 29212500 29212993 -173115354 + L1MEc LINE L1 2164 2647 -3568 2249 103 0 0 chr4 29213694 29213985 -173114362 + AluSq SINE Alu 1 291 -22 383 0 0 21 chr4 29213991 29214039 -173114308 + (TAA)n Simple_repeat Simple_repeat 2 48 0 467 289 60 0 chr4 29214278 29214427 -173113920 + Charlie8 DNA MER1_type 6 163 -2254 351 213 0 0 chr4 29215945 29216020 -173112327 - MER117 DNA MER1_type -115 82 8 2103 158 36 124 chr4 29216107 29216504 -173111843 + LTR32 LTR ERVL 15 361 -110 2052 122 7 0 chr4 29216504 29216790 -173111557 + AluSx SINE Alu 1 288 -24 2103 158 36 124 chr4 29216790 29216893 -173111454 + LTR32 LTR ERVL 361 471 0 1579 128 0 0 chr4 29217471 29217697 -173110650 - AluSg/x SINE Alu -3 307 82 184 300 0 17 chr4 29218119 29218179 -173110168 + L2 LINE L2 3006 3064 -208 2002 118 17 0 chr4 29218210 29218499 -173109848 - AluSx SINE Alu -18 294 1 195 42 0 0 chr4 29219513 29219537 -173108810 + (TG)n Simple_repeat Simple_repeat 1 24 0 190 274 16 0 chr4 29222047 29222109 -173106238 + L2 LINE L2 3251 3313 0 1458 262 108 6 chr4 29223788 29224277 -173104070 + MLT1H LTR MaLR 11 549 0 2449 21 68 0 chr4 29224464 29224745 -173103602 - L1PA4 LINE L1 -2 6153 5854 239 257 0 54 chr4 29224745 29224808 -173103539 + LTR33 LTR ERVL 118 178 -343 317 279 21 71 chr4 29225314 29225454 -173102893 + MIR SINE MIR 60 192 -70 549 306 28 52 chr4 29226326 29226578 -173101769 + MIR SINE MIR 17 262 0 1673 186 3 13 chr4 29227154 29227461 -173100886 + AluJb SINE Alu 1 304 -8 988 241 111 26 chr4 29227601 29228113 -173100234 + MLT1F1 LTR MaLR 1 542 0 1191 198 57 0 chr4 29228421 29228633 -173099714 - MER58A DNA MER1_type 0 224 1 636 174 0 0 chr4 29228924 29229033 -173099314 + MER45B DNA AcHobo 727 835 -205 2316 108 0 10 chr4 29229334 29229641 -173098706 - AluSx SINE Alu -8 304 1 4468 191 38 65 chr4 29229655 29230045 -173098302 - MER45B DNA AcHobo -548 1033 634 1948 163 0 0 chr4 29230045 29230352 -173097995 - AluJo SINE Alu -5 307 1 4468 191 38 65 chr4 29230352 29230544 -173097803 - MER45B DNA AcHobo -947 634 438 1889 188 92 45 chr4 29230544 29230990 -173097357 - MLT1C LTR MaLR 0 467 1 4468 191 38 65 chr4 29230990 29231301 -173097046 - MER45B DNA AcHobo -1143 438 168 2062 97 83 0 chr4 29231301 29231590 -173096757 + AluSq SINE Alu 1 313 0 4468 191 38 65 chr4 29231590 29231723 -173096624 - MER45B DNA AcHobo -1413 168 33 2145 183 95 12 chr4 29231735 29232157 -173096190 + LTR32 LTR ERVL 15 471 0 197 339 99 16 chr4 29232271 29232392 -173095955 - MIR3 SINE MIR -76 132 2 896 221 50 31 chr4 29232812 29233264 -173095083 - MLT1H LTR MaLR 0 549 3 1840 139 18 4 chr4 29233513 29233794 -173094553 - AluJb SINE Alu -3 309 25 266 348 30 22 chr4 29233815 29233950 -173094397 - MER5A DNA MER1_type -7 182 47 425 274 10 0 chr4 29234267 29234369 -173093978 + MER5A DNA MER1_type 3 105 -84 191 250 18 18 chr4 29235089 29235145 -173093202 + MIR SINE MIR 88 143 -119 657 291 151 38 chr4 29235905 29236410 -173091937 + L1ME LINE L1 4662 5223 -923 43505 35 21 2 chr4 29236442 29242507 -173085840 - L1PA2 LINE L1 0 6155 1 904 261 22 86 chr4 29242508 29242675 -173085672 + L1ME LINE L1 5270 5446 -724 2035 129 0 7 chr4 29242675 29242984 -173085363 + AluSx SINE Alu 1 307 -5 904 261 22 86 chr4 29242984 29243280 -173085067 + L1ME LINE L1 5446 5703 -467 267 175 0 0 chr4 29243283 29243340 -173085007 + (TA)n Simple_repeat Simple_repeat 1 57 0 361 300 87 10 chr4 29243349 29243575 -173084772 + L1MC4a LINE L1 5665 5909 -284 669 242 56 119 chr4 29244072 29244485 -173083862 + MLT1L LTR MaLR 229 615 0 204 398 107 11 chr4 29244523 29244870 -173083477 + L2 LINE L2 2891 3270 -2 1904 133 0 7 chr4 29245747 29246057 -173082290 - AluSx SINE Alu 0 308 1 296 254 173 40 chr4 29246073 29246246 -173082101 - MIR SINE MIR -1 261 66 313 379 51 6 chr4 29248071 29248248 -173080099 + MIR3 SINE MIR 17 201 -7 264 267 33 44 chr4 29249015 29249105 -173079242 + MLT1K LTR MaLR 211 299 -289 288 91 0 0 chr4 29249470 29249514 -173078833 + (TCCA)n Simple_repeat Simple_repeat 3 46 0 384 295 49 0 chr4 29249515 29249637 -173078710 - L2 LINE L2 -8 3264 3137 1377 218 80 32 chr4 29249643 29250085 -173078262 - MLT1C LTR MaLR -3 590 1 308 324 32 50 chr4 29250392 29250611 -173077736 - L2 LINE L2 -424 2890 2676 239 250 228 0 chr4 29251960 29252096 -173076251 + L1ME LINE L1 5650 5816 -305 788 217 66 45 chr4 29252376 29252574 -173075773 - L1MB5 LINE L1 -6 6168 5967 527 276 129 13 chr4 29252767 29252999 -173075348 + MIR SINE MIR 2 260 -2 201 242 91 40 chr4 29253022 29253121 -173075226 + L3 LINE CR1 458 561 -1016 4178 98 2 0 chr4 29253263 29253815 -173074532 - MER41A LTR ERV1 -1 553 1 412 250 16 48 chr4 29253824 29253948 -173074399 - L3 LINE CR1 -392 1185 1066 1142 262 80 43 chr4 29254140 29254625 -173073722 + L2 LINE L2 2809 3311 -2 1141 199 155 19 chr4 29254649 29254965 -173073382 + MER90 LTR ERV1 1 359 -216 607 167 0 0 chr4 29254996 29255098 -173073249 - L1MCa LINE L1 -5678 748 647 710 257 48 11 chr4 29255109 29255296 -173073051 + MER90 LTR ERV1 407 600 -14 4044 155 11 33 chr4 29255588 29256315 -173072032 - MER50 LTR ERV1 -23 711 1 236 274 0 0 chr4 29256442 29256493 -173071854 - L2 LINE L2 -11 3302 3252 327 182 68 34 chr4 29257676 29257764 -173070583 - L1MC2 LINE L1 -32 6312 6222 1622 129 4 0 chr4 29257764 29258012 -173070335 - AluJb SINE Alu -14 298 50 718 179 8 0 chr4 29258014 29258137 -173070210 - AluJo/FLAM SINE Alu -187 125 2 739 201 83 6 chr4 29258138 29258307 -173070040 - L1MC2 LINE L1 -114 6230 6049 252 313 26 35 chr4 29259453 29259568 -173068779 - MIR SINE MIR -114 148 35 1892 109 0 8 chr4 29259683 29259949 -173068398 + L1PA8A LINE L1 5864 6127 -4 379 231 9 46 chr4 29260027 29260135 -173068212 - MIR SINE MIR -71 191 88 569 261 17 19 chr4 29260270 29260449 -173067898 - MIR SINE MIR -67 141 16 373 261 130 19 chr4 29260458 29260584 -173067763 - MER5B DNA MER1_type -5 184 37 203 305 17 0 chr4 29260960 29261019 -173067328 + MIR3 SINE MIR 95 154 -54 527 231 58 8 chr4 29261099 29261220 -173067127 + L2 LINE L2 3187 3313 0 332 282 40 24 chr4 29261217 29261341 -173067006 + MER5A DNA MER1_type 64 189 0 * 459 272 32 8 chr4 29262038 29262163 -173066184 + MER5B DNA MER1_type 7 134 -44 470 168 30 10 chr4 29262252 29262353 -173065994 - L1MC2 LINE L1 0 6344 6242 213 39 0 0 chr4 29263117 29263143 -173065204 + (TAA)n Simple_repeat Simple_repeat 1 26 0 651 278 17 17 chr4 29263324 29263504 -173064843 + MIR3 SINE MIR 16 195 -13 188 290 72 0 chr4 29263576 29263645 -173064702 - L2 LINE L2 -3225 89 16 2010 177 85 11 chr4 29263651 29264086 -173064261 + MLT1C LTR MaLR 1 467 0 218 286 29 67 chr4 29264110 29264215 -173064132 + MIR SINE MIR 161 261 -1 217 192 39 0 chr4 29264215 29264267 -173064080 + GA-rich Low_complexity Low_complexity 3 56 0 296 257 112 84 chr4 29264286 29264465 -173063882 - MIR SINE MIR -19 189 3 285 29 0 0 chr4 29264508 29264542 -173063805 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 296 102 20 0 chr4 29264973 29265022 -173063325 + (CATCC)n Simple_repeat Simple_repeat 3 52 0 199 163 23 0 chr4 29265214 29265257 -173063090 - L2 LINE L2 -345 2968 2925 1654 244 28 13 chr4 29266097 29266557 -173061790 - MLT1C LTR MaLR 0 467 1 288 71 47 39 chr4 29266770 29266897 -173061450 + HERV17 LTR ERV1 706 833 -7793 21 0 0 0 chr4 29267826 29267847 -173060500 + AT_rich Low_complexity Low_complexity 1 21 0 272 244 59 59 chr4 29268522 29268641 -173059706 + L2 LINE L2 2641 2759 -555 567 236 0 0 chr4 29268645 29268755 -173059592 + MLT2C1 LTR ERVL 248 357 -40 207 211 33 22 chr4 29268759 29268849 -173059498 + (CATATA)n Simple_repeat Simple_repeat 4 94 0 285 109 0 0 chr4 29268878 29268924 -173059423 + (TCTA)n Simple_repeat Simple_repeat 1 46 0 320 51 0 0 chr4 29268927 29268966 -173059381 + MLT2C1 LTR ERVL 357 395 -2 1141 278 72 69 chr4 29269024 29269566 -173058781 + MLT1G1 LTR MaLR 49 595 0 545 292 65 6 chr4 29269608 29269776 -173058571 + L2 LINE L2 3134 3311 -2 184 141 22 76 chr4 29269800 29269892 -173058455 + CT-rich Low_complexity Low_complexity 3 89 0 2090 112 3 3 chr4 29270011 29270307 -173058040 + AluSq SINE Alu 1 296 -17 694 266 3 121 chr4 29271200 29271490 -173056857 - L2 LINE L2 -8 3264 3009 1864 156 23 0 chr4 29271490 29271791 -173056556 + AluSx SINE Alu 1 308 -4 15411 52 32 0 chr4 29271791 29274450 -173053897 + L1PA6 LINE L1 3445 6135 -19 465 19 0 0 chr4 29274450 29274504 -173053843 + (TA)n Simple_repeat Simple_repeat 1 54 0 228 35 0 0 chr4 29274505 29274534 -173053813 + (GA)n Simple_repeat Simple_repeat 2 30 0 318 50 0 0 chr4 29274612 29274652 -173053695 + (GA)n Simple_repeat Simple_repeat 1 40 0 220 291 18 0 chr4 29275632 29275687 -173052660 - L2 LINE L2 -7 3265 3210 387 175 0 25 chr4 29276156 29276236 -173052111 + MLT1K LTR MaLR 493 570 -18 1976 157 63 23 chr4 29276833 29277155 -173051192 + MLT1A1 LTR MaLR 1 340 -25 2563 101 30 52 chr4 29277155 29277562 -173050785 - MER48 LTR ERV1 0 398 1 1976 157 63 23 chr4 29277562 29277590 -173050757 + MLT1A1 LTR MaLR 340 365 0 25 0 0 0 chr4 29278690 29278715 -173049632 + AT_rich Low_complexity Low_complexity 1 25 0 566 143 65 39 chr4 29278813 29278967 -173049380 - MER96B DNA MER1_type? -20 397 240 1966 142 70 25 chr4 29279121 29279480 -173048867 - THE1C LTR MaLR 0 375 1 478 250 183 6 chr4 29279544 29279724 -173048623 - MIR SINE MIR -36 226 15 257 316 168 57 chr4 29279761 29280005 -173048342 - L3 LINE CR1 -5 1572 1302 281 333 113 21 chr4 29280193 29280334 -173048013 + L2 LINE L2 3110 3263 -9 283 298 8 73 chr4 29280430 29280554 -173047793 + MIR SINE MIR 20 135 -127 687 265 82 8 chr4 29281930 29282322 -173046025 + LTR33 LTR ERVL 47 519 -2 658 294 95 47 chr4 29282407 29282819 -173045528 - L2 LINE L2 -1 3312 2870 2322 99 0 0 chr4 29282819 29283132 -173045215 + AluSq SINE Alu 1 313 0 658 294 95 47 chr4 29283132 29283334 -173045013 - L2 LINE L2 -443 2870 2679 1464 18 0 0 chr4 29284062 29284230 -173044117 - L1PA4 LINE L1 0 6155 5988 1883 18 14 0 chr4 29284230 29284448 -173043899 + L1PA4 LINE L1 5639 5859 -296 260 149 21 0 chr4 29284683 29284730 -173043617 + L2 LINE L2 3225 3272 0 562 231 31 38 chr4 29284883 29285043 -173043304 - MIR SINE MIR -76 186 28 638 264 25 0 chr4 29285311 29285470 -173042877 + MIR SINE MIR 88 250 -12 240 35 0 0 chr4 29285479 29285508 -173042839 + (TCC)n Simple_repeat Simple_repeat 3 31 0 227 271 86 0 chr4 29285514 29285584 -173042763 + L2 LINE L2 3007 3082 -190 218 274 0 0 chr4 29285670 29285721 -173042626 + (CATA)n Simple_repeat Simple_repeat 1 51 0 220 337 12 0 chr4 29285732 29285818 -173042529 + L2 LINE L2 3182 3268 -4 210 71 0 0 chr4 29286456 29286484 -173041863 + (A)n Simple_repeat Simple_repeat 1 28 0 2092 131 50 34 chr4 29286696 29287054 -173041293 - THE1B LTR MaLR 0 364 1 2948 165 48 91 chr4 29288392 29289223 -173039124 + MER4E LTR ERV1 1 903 0 352 211 266 0 chr4 29289407 29289535 -173038812 + MER5A DNA MER1_type 10 171 -18 3452 152 8 2 chr4 29289702 29290230 -173038117 + LTR26B LTR ERV1 1 531 0 1956 134 7 13 chr4 29290317 29290615 -173037732 - AluJb SINE Alu -16 296 1 539 144 0 0 chr4 29340804 29340894 -172987453 + AluY SINE Alu 213 302 -9 2464 125 17 6 chr4 29341194 29341554 -172986793 - THE1B LTR MaLR 0 364 1 1488 156 11 40 chr4 29341955 29342231 -172986116 + MLT2B3 LTR ERVL 1 268 -286 989 152 0 33 chr4 29342221 29342405 -172985942 + MLT2B2 LTR ERVL 336 513 -2 * 1054 168 59 9 chr4 29342406 29342626 -172985721 - LTR47B LTR ERVL 0 443 213 445 285 42 7 chr4 29342884 29343028 -172985319 - MIR SINE MIR -68 194 46 188 83 0 28 chr4 29343782 29343818 -172984529 + (TTTTG)n Simple_repeat Simple_repeat 5 39 0 696 307 14 5 chr4 29343933 29344148 -172984199 - MIR SINE MIR 0 262 46 2292 146 48 26 chr4 29344889 29345307 -172983040 + MSTA LTR MaLR 1 427 -1 644 204 67 80 chr4 29345485 29345710 -172982637 - L2 LINE L2 0 3313 3092 227 224 45 0 chr4 29345751 29345818 -172982529 + L1M4 LINE L1 3835 3904 -2242 3251 286 69 14 chr4 29345843 29347171 -172981176 - L2 LINE L2 -167 3146 1746 467 262 12 30 chr4 29347199 29347363 -172980984 + MER97b DNA MER1_type? 2 162 -891 3080 225 47 4 chr4 29347463 29348404 -172979943 + L1M4 LINE L1 2423 3403 -2743 491 144 0 10 chr4 29348444 29348541 -172979806 + L1MB7 LINE L1 6089 6184 0 504 211 48 81 chr4 29349807 29350016 -172978331 - MLT1K LTR MaLR -61 527 326 3944 106 0 4 chr4 29350201 29350730 -172977617 + MER1A DNA MER1_type 1 527 0 2196 127 3 0 chr4 29351081 29351389 -172976958 - AluSx SINE Alu -3 309 1 2135 62 0 0 chr4 29352448 29352705 -172975642 + AluY SINE Alu 45 301 -10 1644 175 3 52 chr4 29352926 29353234 -172975113 - AluJo SINE Alu -19 293 1 1786 128 56 0 chr4 29353785 29354089 -172974258 - MER83C LTR ERV1 -3 370 50 1038 227 76 67 chr4 29354463 29354817 -172973530 - MLT1C LTR MaLR 0 467 107 2129 142 0 0 chr4 29354817 29355126 -172973221 - AluSx SINE Alu -3 309 1 1038 227 76 67 chr4 29355126 29355234 -172973113 - MLT1C LTR MaLR -360 107 1 2298 101 3 3 chr4 29355317 29355624 -172972723 - AluY SINE Alu -4 307 1 1812 192 3 3 chr4 29356083 29356395 -172971952 - AluJb SINE Alu 0 312 1 2441 80 0 22 chr4 29356803 29357116 -172971231 + AluY SINE Alu 1 306 -5 30 83 0 0 chr4 29357555 29357627 -172970720 + AT_rich Low_complexity Low_complexity 1 72 0 748 274 118 44 chr4 29357798 29357934 -172970413 - L2 LINE L2 -1 3312 3187 2634 87 3 43 chr4 29357934 29357976 -172970371 - THE1C LTR MaLR 0 375 333 2243 107 0 16 chr4 29357976 29358284 -172970063 + AluY SINE Alu 9 311 0 2634 87 3 43 chr4 29358284 29358632 -172969715 - THE1C LTR MaLR -42 333 1 748 274 118 44 chr4 29358632 29358860 -172969487 - L2 LINE L2 -126 3187 2921 24 53 0 0 chr4 29359950 29359988 -172968359 + AT_rich Low_complexity Low_complexity 1 38 0 279 54 0 0 chr4 29359993 29360030 -172968317 + (TG)n Simple_repeat Simple_repeat 2 38 0 385 188 157 133 chr4 29360260 29360534 -172967813 - HAL1b LINE L1 -339 1009 743 846 78 0 0 chr4 29360534 29360649 -172967698 + (TTCC)n Simple_repeat Simple_repeat 3 117 0 1928 172 0 7 chr4 29360657 29360959 -172967388 - AluJb SINE Alu -4 308 9 385 188 157 133 chr4 29360959 29361040 -172967307 - HAL1b LINE L1 -611 737 659 1590 187 96 3 chr4 29361040 29361372 -172966975 - MLT1A1 LTR MaLR -2 363 1 385 188 157 133 chr4 29361372 29361426 -172966921 - HAL1b LINE L1 -689 659 580 704 263 67 10 chr4 29361434 29361643 -172966704 + MIR SINE MIR 17 237 -25 280 169 84 12 chr4 29363247 29363330 -172965017 + MER3 DNA MER1_type 80 168 -41 1536 162 52 11 chr4 29363338 29363702 -172964645 + MER3 DNA MER1_type 2246 2624 0 227 296 23 45 chr4 29364585 29364673 -172963674 + MIR SINE MIR 22 107 -155 208 339 61 74 chr4 29364679 29364909 -172963438 - MIR SINE MIR -11 251 25 186 103 0 0 chr4 29365619 29365648 -172962699 + (TTCA)n Simple_repeat Simple_repeat 4 32 0 2018 117 0 4 chr4 29365858 29366132 -172962215 - AluSx SINE Alu -11 301 29 23 0 0 0 chr4 29367161 29367184 -172961163 + AT_rich Low_complexity Low_complexity 1 23 0 3839 181 32 17 chr4 29367196 29368369 -172959978 - L1MB4 LINE L1 -71 6109 4919 553 299 70 15 chr4 29369237 29369438 -172958909 + MIR SINE MIR 32 243 -19 376 323 114 6 chr4 29369496 29369654 -172958693 - MIR SINE MIR -86 176 2 183 273 30 30 chr4 29369715 29369781 -172958566 - L2 LINE L2 -212 3060 2995 326 347 47 35 chr4 29370767 29370937 -172957410 + MIR3 SINE MIR 5 176 -32 27 0 0 0 chr4 29371032 29371059 -172957288 + AT_rich Low_complexity Low_complexity 1 27 0 2002 129 7 0 chr4 29371193 29371473 -172956874 + AluSx SINE Alu 1 282 -30 39 22 0 0 chr4 29371484 29371530 -172956817 + AT_rich Low_complexity Low_complexity 1 46 0 1266 274 63 61 chr4 29371585 29371984 -172956363 - MLT1E LTR MaLR 0 593 196 2135 116 27 3 chr4 29371984 29372285 -172956062 + AluSq SINE Alu 6 313 0 1266 274 63 61 chr4 29372285 29372364 -172955983 - MLT1E LTR MaLR -397 196 119 2961 160 41 8 chr4 29372364 29372900 -172955447 - MER41C LTR ERV1 0 554 1 1266 274 63 61 chr4 29372900 29373008 -172955339 - MLT1E LTR MaLR -474 119 5 246 32 0 0 chr4 29374052 29374083 -172954264 + (TA)n Simple_repeat Simple_repeat 2 32 0 1726 47 9 9 chr4 29374084 29374297 -172954050 - AluY SINE Alu -8 303 91 22 0 0 0 chr4 29374297 29374319 -172954028 + AT_rich Low_complexity Low_complexity 1 22 0 217 295 0 0 chr4 29374333 29374394 -172953953 - MIR SINE MIR -108 154 94 * 407 222 20 10 chr4 29374389 29374488 -172953859 + MIR SINE MIR 124 223 -39 2647 144 2 7 chr4 29375583 29376019 -172952328 + MER57B LTR ERV1 1 434 0 1366 183 125 12 chr4 29376155 29376483 -172951864 + MLT1A1 LTR MaLR 1 365 0 358 255 29 29 chr4 29377354 29377456 -172950891 + MIR SINE MIR 4 105 -157 379 300 29 21 chr4 29378169 29378309 -172950038 - MIR SINE MIR -102 160 20 823 123 7 7 chr4 29379333 29379479 -172948868 + (TTCC)n Simple_repeat Simple_repeat 2 147 0 200 274 48 0 chr4 29379480 29379542 -172948805 - L2 LINE L2 0 3313 3249 * 1694 258 140 13 chr4 29379538 29380061 -172948286 - L2 LINE L2 -399 2915 2327 1702 196 51 11 chr4 29380061 29380434 -172947913 + LTR32 LTR ERVL 15 402 -69 827 267 164 9 chr4 29380541 29380882 -172947465 - L2 LINE L2 -1042 2272 1879 185 77 0 0 chr4 29381289 29381315 -172947032 - L2 LINE L2 -15 3298 3273 5868 80 36 51 chr4 29381445 29382835 -172945512 + L1PA10 LINE L1 4792 6168 0 2405 84 0 0 chr4 29383434 29383733 -172944614 + AluY SINE Alu 1 299 -12 294 370 15 0 chr4 29384163 29384298 -172944049 - MIR SINE MIR -17 245 109 277 266 133 41 chr4 29386480 29386698 -172941649 + Charlie8 DNA MER1_type 13 250 -2167 758 256 0 37 chr4 29386703 29386945 -172941402 - MER106A DNA MER1_type -3 233 1 213 206 88 44 chr4 29387347 29387415 -172940932 - L2 LINE L2 -10 3303 3233 853 187 60 11 chr4 29387879 29388061 -172940286 + MLT1A1 LTR MaLR 13 203 -162 2044 149 29 0 chr4 29388068 29388417 -172939930 - THE1B LTR MaLR 0 364 6 1012 167 17 0 chr4 29388397 29388577 -172939770 + MLT1A1 LTR MaLR 183 365 0 * 699 275 110 64 chr4 29389005 29389460 -172938887 - MLT1K LTR MaLR 0 476 1 236 313 60 0 chr4 29389461 29389544 -172938803 - MLT1K LTR MaLR -484 104 17 1788 162 40 0 chr4 29389999 29390301 -172938046 + AluSq SINE Alu 1 313 0 711 156 23 23 chr4 29390482 29390610 -172937737 + FLAM_A SINE Alu 1 128 -5 213 121 0 0 chr4 29391896 29391929 -172936418 + (TTTC)n Simple_repeat Simple_repeat 1 33 0 186 189 0 0 chr4 29392553 29392590 -172935757 + (TG)n Simple_repeat Simple_repeat 1 37 0 545 238 19 62 chr4 29392926 29393086 -172935261 + MIR SINE MIR 13 165 -97 316 296 24 32 chr4 29393153 29393278 -172935069 + MLT2E LTR ERVL 32 155 -473 185 327 20 20 chr4 29393607 29393708 -172934639 + MIR SINE MIR 159 259 -3 269 247 90 11 chr4 29393849 29393938 -172934409 + MIR SINE MIR 142 237 -25 2087 94 0 62 chr4 29396183 29396492 -172931855 - AluSx SINE Alu -22 290 1 1918 142 62 30 chr4 29397211 29397584 -172930763 + Tigger2 DNA MER2_type 2334 2718 0 222 114 57 29 chr4 29397597 29397702 -172930645 + (TA)n Simple_repeat Simple_repeat 1 108 0 28 61 0 0 chr4 29397759 29397808 -172930539 + AT_rich Low_complexity Low_complexity 1 49 0 236 152 30 40 chr4 29397854 29397953 -172930394 + (TA)n Simple_repeat Simple_repeat 1 98 0 24 0 0 0 chr4 29397966 29397990 -172930357 + AT_rich Low_complexity Low_complexity 1 24 0 2488 66 0 0 chr4 29397991 29398296 -172930051 + AluY SINE Alu 1 305 -6 213 273 18 18 chr4 29398336 29398391 -172929956 - MIR SINE MIR -63 145 91 414 304 9 9 chr4 29398902 29399017 -172929330 - MIR3 SINE MIR -11 197 83 1460 203 0 30 chr4 29399084 29399355 -172928992 + AluJb SINE Alu 1 263 -49 293 229 16 0 chr4 29399385 29399446 -172928901 - MER81 DNA DNA -52 62 1 227 260 20 0 chr4 29399574 29399624 -172928723 + L2 LINE L2 3263 3313 0 351 272 119 55 chr4 29400704 29400906 -172927441 - MIR SINE MIR 0 262 48 199 340 0 20 chr4 29401418 29401468 -172926879 - L2 LINE L2 -86 3186 3138 204 211 0 0 chr4 29401599 29401637 -172926710 + (TGAA)n Simple_repeat Simple_repeat 1 38 0 268 335 102 36 chr4 29401987 29402262 -172926085 - L2 LINE L2 -598 2716 2424 403 288 91 8 chr4 29403024 29403156 -172925191 - MIR3 SINE MIR -7 201 59 6628 223 32 38 chr4 29403273 29403374 -172924973 - L1MB1 LINE L1 -14 5999 5899 2349 98 0 0 chr4 29403374 29403671 -172924676 - AluSq SINE Alu -16 297 1 6628 223 32 38 chr4 29403671 29404349 -172923998 - L1MB1 LINE L1 -114 5899 5219 2207 103 31 0 chr4 29404349 29404640 -172923707 - AluSq SINE Alu -13 300 1 6628 223 32 38 chr4 29404640 29406668 -172921679 - L1MB1 LINE L1 -794 5219 3203 1482 259 70 2 chr4 29406670 29407183 -172921164 - L1MB1 LINE L1 -4668 1223 676 813 304 34 52 chr4 29407370 29407758 -172920589 - L1MB1 LINE L1 -5507 384 4 527 156 52 0 chr4 29407832 29407928 -172920419 - HY1 scRNA scRNA -5 107 7 804 290 71 12 chr4 29407987 29408325 -172920022 - LTR16C LTR ERVL 0 491 134 1060 261 117 52 chr4 29408748 29409439 -172918908 + L2 LINE L2 2557 3313 0 675 298 50 30 chr4 29409590 29409918 -172918429 + L3 LINE CR1 1198 1576 -1 2534 37 20 0 chr4 29410242 29410539 -172917808 + AluY SINE Alu 1 303 -8 208 318 0 0 chr4 29410723 29410786 -172917561 - MER5A DNA MER1_type -83 106 44 2313 102 6 10 chr4 29411471 29411785 -172916562 + AluSq SINE Alu 1 313 0 368 303 46 14 chr4 29412484 29413027 -172915320 + L1ME4a LINE L1 5485 6119 -2 257 276 26 0 chr4 29413269 29413345 -172915002 - MLT1I LTR MaLR -13 396 319 3022 36 6 0 chr4 29413387 29413751 -172914596 - L1PA4 LINE L1 0 6155 5790 6775 47 10 8 chr4 29413853 29414767 -172913580 - L1P LINE L1 -2569 3577 2659 2106 112 0 3 chr4 29414767 29415052 -172913295 - AluSq SINE Alu -29 284 1 6775 47 10 8 chr4 29415052 29415073 -172913274 - L1P LINE L1 -3487 2659 2640 282 300 208 0 chr4 29415197 29415327 -172913020 - MLT1I LTR MaLR -249 160 4 316 228 76 11 chr4 29416739 29416831 -172911516 + MLT1L LTR MaLR 1 98 -517 406 277 116 40 chr4 29416980 29417258 -172911089 + MLT1J LTR MaLR 224 602 -13 2218 167 86 2 chr4 29417258 29417653 -172910694 + MSTC LTR MaLR 1 428 0 406 277 116 40 chr4 29417653 29417669 -172910678 + MLT1J LTR MaLR 602 615 0 569 366 88 12 chr4 29417680 29418144 -172910203 + L2 LINE L2 2514 3018 -254 * 622 283 158 22 chr4 29418136 29418458 -172909889 - L2 LINE L2 -870 2444 2079 397 356 0 0 chr4 29418519 29418637 -172909710 + L2 LINE L2 3150 3267 -5 632 265 53 97 chr4 29418997 29419543 -172908804 - MER34 LTR ERV1 0 542 20 2531 107 3 27 chr4 29419543 29419916 -172908431 - THE1B LTR MaLR 0 364 1 632 265 53 97 chr4 29419916 29419936 -172908411 - MER34 LTR ERV1 -522 20 1 530 158 0 11 chr4 29420048 29420142 -172908205 + MLT1B LTR MaLR 1 93 -297 2399 136 24 24 chr4 29420142 29420561 -172907786 - MSTC LTR MaLR 0 428 10 1042 195 62 33 chr4 29420570 29420932 -172907415 + MLT1B LTR MaLR 89 390 0 207 275 18 64 chr4 29420933 29421042 -172907305 - MIR SINE MIR -72 190 87 1285 249 80 56 chr4 29421194 29421732 -172906615 - MLT1E LTR MaLR -7 586 36 409 210 129 32 chr4 29421748 29421872 -172906475 - MIR SINE MIR -125 137 2 978 226 37 5 chr4 29422018 29422235 -172906112 - MER58A DNA MER1_type 0 224 1 7465 33 2 0 chr4 29422905 29424522 -172903825 + L1PA3 LINE L1 4536 6155 0 220 103 23 92 chr4 29424753 29424840 -172903507 + (TTATA)n Simple_repeat Simple_repeat 1 81 0 21 36 0 0 chr4 29425011 29425039 -172903308 + AT_rich Low_complexity Low_complexity 1 28 0 1383 149 5 5 chr4 29426105 29426326 -172902021 + AluSg/x SINE Alu 84 304 -8 393 247 240 32 chr4 29426585 29426739 -172901608 + MER5A DNA MER1_type 4 189 0 267 245 94 50 chr4 29426943 29427102 -172901245 + HAL1b LINE L1 748 913 -435 300 282 9 45 chr4 29427145 29427255 -172901092 + HAL1b LINE L1 797 902 -446 665 155 0 8 chr4 29428062 29428195 -172900152 + L1MC2 LINE L1 5981 6116 -221 230 307 0 11 chr4 29428679 29428767 -172899580 - MLT1I LTR MaLR -236 173 87 966 205 51 9 chr4 29429559 29429774 -172898573 - MLT1C LTR MaLR 0 467 244 911 191 37 48 chr4 29429782 29430089 -172898258 - MLT1B LTR MaLR -155 235 1 627 42 32 0 chr4 29430250 29430345 -172898002 + (TCTA)n Simple_repeat Simple_repeat 4 101 0 21 36 0 0 chr4 29431615 29431643 -172896704 + AT_rich Low_complexity Low_complexity 1 28 0 342 0 0 0 chr4 29433038 29433076 -172895271 + (TTA)n Simple_repeat Simple_repeat 3 40 0 3388 57 4 50 chr4 29433077 29433555 -172894792 - L1PA7 LINE L1 -19 6135 5680 22 0 0 0 chr4 29433730 29433752 -172894595 + AT_rich Low_complexity Low_complexity 1 22 0 382 244 23 0 chr4 29433868 29433954 -172894393 + L2 LINE L2 3222 3309 -4 1386 189 85 74 chr4 29434676 29435135 -172893212 + MER31B LTR ERV1 3 466 0 198 0 0 0 chr4 29435368 29435390 -172892957 + (T)n Simple_repeat Simple_repeat 1 22 0 208 163 0 23 chr4 29436590 29436633 -172891714 + (TCTA)n Simple_repeat Simple_repeat 1 42 0 180 0 0 0 chr4 29437529 29437549 -172890798 + (TTA)n Simple_repeat Simple_repeat 2 21 0 26 0 0 0 chr4 29438053 29438079 -172890268 + AT_rich Low_complexity Low_complexity 1 26 0 234 0 0 0 chr4 29439108 29439134 -172889213 + (T)n Simple_repeat Simple_repeat 1 26 0 25 31 0 0 chr4 29439250 29439282 -172889065 + AT_rich Low_complexity Low_complexity 1 32 0 237 250 28 28 chr4 29439926 29439998 -172888349 - MIR3 SINE MIR -18 190 119 921 143 42 37 chr4 29440212 29440401 -172887946 + THE1C LTR MaLR 1 190 -185 530 164 214 50 chr4 29440536 29440695 -172887652 + THE1C LTR MaLR 180 364 0 516 277 54 127 chr4 29441327 29441898 -172886449 - L2 LINE L2 -1 3312 2791 1233 221 178 72 chr4 29441898 29442386 -172885961 + MLT1F LTR MaLR 1 540 -2 516 277 54 127 chr4 29442386 29442420 -172885927 - L2 LINE L2 -522 2791 2756 2002 140 0 41 chr4 29442748 29443062 -172885285 - AluSx SINE Alu -11 301 1 624 148 0 52 chr4 29443661 29443796 -172884551 - L1MA9 LINE L1 -300 6012 5885 337 294 32 121 chr4 29444965 29445247 -172883100 + MIR SINE MIR 6 262 0 263 263 0 0 chr4 29446095 29446152 -172882195 - L2 LINE L2 0 3313 3257 310 376 31 12 chr4 29446616 29446778 -172881569 + L2 LINE L2 2611 2775 -539 481 313 101 10 chr4 29447832 29448030 -172880317 - MIR SINE MIR -28 234 19 22 56 0 0 chr4 29449448 29449484 -172878863 + AT_rich Low_complexity Low_complexity 1 36 0 337 268 62 0 chr4 29450666 29450763 -172877584 - MIR SINE MIR 0 262 160 6283 31 2 0 chr4 29451618 29452697 -172875650 - L1P2 LINE L1 -478 5677 4598 633 221 11 33 chr4 29452797 29452978 -172875369 + L1MC1 LINE L1 6138 6314 -19 1652 182 18 0 chr4 29453064 29453350 -172874997 - AluJo SINE Alu -21 291 1 1796 160 0 36 chr4 29453380 29453499 -172874848 + AluSx SINE Alu 1 123 -189 2136 134 3 13 chr4 29453499 29453806 -172874541 - AluSq SINE Alu -9 304 1 1796 160 0 36 chr4 29453806 29453992 -172874355 + AluSx SINE Alu 123 295 -17 312 278 11 0 chr4 29454285 29454375 -172873972 - MER117 DNA MER1_type -40 157 67 2076 144 36 30 chr4 29455669 29456031 -172872316 - THE1B LTR MaLR 0 364 1 503 113 14 0 chr4 29456282 29456353 -172871994 + AluS SINE Alu 3 74 -239 421 330 39 17 chr4 29456655 29456834 -172871513 + L3b LINE CR1 1283 1465 -118 2218 111 0 10 chr4 29457485 29457782 -172870565 + AluSx SINE Alu 1 294 -18 469 246 91 69 chr4 29457794 29457923 -172870424 + MLT1J1 LTR MaLR 8 148 -302 643 240 44 16 chr4 29457923 29458106 -172870241 + MER5A DNA MER1_type 2 189 0 469 246 91 69 chr4 29458106 29458198 -172870149 + MLT1J1 LTR MaLR 148 237 -213 281 321 6 6 chr4 29458633 29458747 -172869600 + MIR SINE MIR 46 159 -49 183 313 192 28 chr4 29458736 29458950 -172869397 - L2 LINE L2 -74 3239 2991 * 1109 253 29 12 chr4 29459374 29459789 -172868558 - L1MCc LINE L1 -3593 3348 2927 845 277 42 40 chr4 29459792 29460312 -172868035 - L1MCc LINE L1 -4191 2931 2411 565 287 65 36 chr4 29460315 29461035 -172867312 - L1MCc LINE L1 -4970 1453 1129 455 298 63 54 chr4 29461371 29461800 -172866547 - L1MCc LINE L1 -5970 453 21 212 213 11 128 chr4 29462925 29463019 -172865328 + L2 LINE L2 3136 3218 -54 409 337 47 17 chr4 29463254 29463426 -172864921 + L2 LINE L2 3128 3304 -9 180 77 0 0 chr4 29463427 29463453 -172864894 + (TGAA)n Simple_repeat Simple_repeat 2 27 0 603 288 64 13 chr4 29464087 29464320 -172864027 + LTR16A1 LTR ERVL 213 457 0 302 259 9 52 chr4 29465249 29465365 -172862982 + MLT1L LTR MaLR 90 200 -415 331 330 51 35 chr4 29465422 29465619 -172862728 - L3 LINE CR1 -551 1026 827 2292 92 0 32 chr4 29466354 29466670 -172861677 + AluSx SINE Alu 4 309 -3 257 317 10 39 chr4 29466728 29466936 -172861411 + L1ME LINE L1 5143 5344 -802 340 312 68 44 chr4 29466958 29467074 -172861273 + L1ME LINE L1 5366 5491 -671 1469 206 36 36 chr4 29467074 29467439 -172860908 + MLT1A1 LTR MaLR 1 365 0 340 312 68 44 chr4 29467439 29467527 -172860820 + L1ME LINE L1 5491 5575 -587 1250 158 5 5 chr4 29467540 29467743 -172860604 + AluJo SINE Alu 1 203 -109 345 100 36 45 chr4 29468043 29468153 -172860194 + (TA)n Simple_repeat Simple_repeat 2 110 0 268 320 65 20 chr4 29468156 29468356 -172859991 + L1ME LINE L1 5616 5824 -297 1066 275 67 26 chr4 29468388 29468730 -172859617 + L2 LINE L2 2958 3313 0 312 333 18 0 chr4 29468755 29468866 -172859481 + LTR16A LTR ERVL 338 450 0 712 189 0 0 chr4 29468945 29469072 -172859275 + LTR16A LTR ERVL 241 367 -83 25 0 0 0 chr4 29470447 29470472 -172857875 + AT_rich Low_complexity Low_complexity 1 25 0 316 203 43 0 chr4 29470851 29470920 -172857427 - MLT-int LTR MaLR -988 747 676 2858 207 16 36 chr4 29471055 29471465 -172856882 - MLT1A2-int LTR MaLR -1075 660 267 2056 144 3 0 chr4 29471465 29471763 -172856584 - AluSx SINE Alu -8 304 6 2858 207 16 36 chr4 29471763 29472024 -172856323 - MLT1A2-int LTR MaLR -1468 267 2 1166 206 187 9 chr4 29472025 29472341 -172856006 - MLT1A2 LTR MaLR -2 372 1 216 158 0 0 chr4 29473243 29473281 -172855066 + (TG)n Simple_repeat Simple_repeat 1 38 0 1953 153 51 56 chr4 29473774 29474166 -172854181 + MLT1B LTR MaLR 1 390 0 848 200 48 0 chr4 29474701 29474846 -172853501 + FRAM SINE Alu 1 151 -25 734 259 175 37 chr4 29475718 29476204 -172852143 - MLT1H1 LTR MaLR -2 553 1 1942 170 7 58 chr4 29476234 29476645 -172851702 - MLT1B LTR MaLR 0 390 1 349 353 69 34 chr4 29476809 29477129 -172851218 + MLT1K LTR MaLR 194 524 -64 2137 131 0 28 chr4 29477358 29477679 -172850668 + AluSx SINE Alu 1 312 0 236 53 26 0 chr4 29477689 29477727 -172850620 + (TC)n Simple_repeat Simple_repeat 2 40 0 809 220 6 0 chr4 29478265 29478438 -172849909 + LTR47B LTR ERVL 1 174 -269 276 146 0 54 chr4 29478694 29478750 -172849597 - L1PB4 LINE L1 -2 6154 6105 2189 64 8 0 chr4 29480766 29481030 -172847317 - AluY SINE Alu -17 294 29 488 239 69 38 chr4 29482339 29482498 -172845849 - MIR3 SINE MIR -9 199 36 247 238 127 0 chr4 29482973 29483036 -172845311 - MIR SINE MIR -104 158 88 2252 104 0 3 chr4 29483287 29483596 -172844751 - AluY SINE Alu -3 308 1 382 343 99 37 chr4 29483706 29484088 -172844259 + L2 LINE L2 2550 2955 -359 2047 229 10 6 chr4 29484237 29484726 -172843621 + L1ME1 LINE L1 5433 5923 -243 976 195 18 12 chr4 29484738 29485035 -172843312 - MER2 DNA MER2_type -9 336 3 447 256 20 20 chr4 29485123 29485322 -172843025 + L1MA10 LINE L1 5977 6334 0 462 289 127 38 chr4 29485589 29485928 -172842419 - MLT1J2 LTR MaLR 0 450 82 428 263 72 68 chr4 29486475 29486832 -172841515 + MLT1J LTR MaLR 27 450 -59 2110 132 3 0 chr4 29487422 29487718 -172840629 + AluSg SINE Alu 1 297 -13 261 278 61 91 chr4 29487905 29488103 -172840244 - MIR SINE MIR -50 212 21 590 281 44 0 chr4 29488173 29488364 -172839983 + MIR SINE MIR 15 213 -49 341 349 27 27 chr4 29488663 29488809 -172839538 - L2 LINE L2 0 3272 3127 402 320 33 28 chr4 29489439 29489620 -172838727 - MIR SINE MIR -78 184 3 283 280 28 28 chr4 29489636 29489743 -172838604 + L1P LINE L1 5318 5424 -742 878 232 21 11 chr4 29489755 29489945 -172838402 - MER58A DNA MER1_type -32 192 1 23 33 0 0 chr4 29489954 29489984 -172838363 + AT_rich Low_complexity Low_complexity 1 30 0 210 195 39 0 chr4 29490353 29490430 -172837917 + GA-rich Low_complexity Low_complexity 3 82 0 706 284 31 5 chr4 29490710 29490904 -172837443 + MIR SINE MIR 46 244 -18 2014 91 4 0 chr4 29490950 29491203 -172837144 + AluSx SINE Alu 1 254 -58 499 269 107 0 chr4 29491330 29491479 -172836868 + MIR SINE MIR 21 185 -77 422 320 33 0 chr4 29493835 29493988 -172834359 - MIR SINE MIR -58 204 47 1966 143 76 29 chr4 29495981 29496254 -172832093 + THE1B LTR MaLR 1 295 -69 2228 112 0 3 chr4 29496254 29496550 -172831797 - AluSg SINE Alu -15 295 1 1966 143 76 29 chr4 29496550 29496619 -172831728 + THE1B LTR MaLR 295 359 -5 934 279 54 54 chr4 29496733 29497092 -172831255 + MLT1G1 LTR MaLR 1 423 -172 195 286 48 16 chr4 29497199 29497262 -172831085 - MIR SINE MIR -121 87 23 430 233 98 15 chr4 29498722 29498855 -172829492 + MIR SINE MIR 30 173 -89 22 0 0 0 chr4 29498995 29499017 -172829330 + AT_rich Low_complexity Low_complexity 1 22 0 2241 123 7 0 chr4 29499047 29499357 -172828990 + AluSx SINE Alu 1 312 0 934 234 22 26 chr4 29500994 29501225 -172827122 - MIR SINE MIR -22 240 11 254 298 199 7 chr4 29501249 29501390 -172826957 - MIR SINE MIR -68 194 27 297 277 39 62 chr4 29501422 29501552 -172826795 + MIR SINE MIR 48 174 -88 2711 122 3 8 chr4 29502629 29503006 -172825341 - THE1C LTR MaLR 0 375 1 11108 107 20 39 chr4 29503006 29504033 -172824314 - THE1C-int LTR MaLR 0 1580 592 2291 115 0 6 chr4 29504033 29504345 -172824002 - AluSg SINE Alu 0 310 1 11108 107 20 39 chr4 29504345 29504927 -172823420 - THE1C-int LTR MaLR -988 592 1 2461 111 35 24 chr4 29504927 29505298 -172823049 - THE1C LTR MaLR 0 375 1 247 258 83 144 chr4 29505535 29505764 -172822583 - MLT1-int LTR MaLR -129 1242 1028 1975 219 20 67 chr4 29506596 29507107 -172821240 + MLT1D LTR MaLR 1 487 -18 2698 129 0 3 chr4 29507275 29507640 -172820707 - THE1B LTR MaLR 0 364 1 859 251 29 14 chr4 29508515 29508722 -172819625 + MER63A DNA MER1_type 1 210 0 3122 168 25 39 chr4 29508738 29508985 -172819362 + LTR69 LTR ERVL 1 250 -338 1945 156 64 22 chr4 29508985 29509345 -172819002 + THE1C LTR MaLR 1 375 0 3122 168 25 39 chr4 29509345 29509380 -172818967 + LTR69 LTR ERVL 250 284 -304 198 0 0 0 chr4 29509380 29509402 -172818945 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 3122 168 25 39 chr4 29509402 29509712 -172818635 + LTR69 LTR ERVL 284 586 -2 292 293 45 27 chr4 29510731 29510943 -172817404 + L1ME LINE L1 5656 5875 -287 232 344 90 8 chr4 29512560 29512682 -172815665 - MIR SINE MIR -100 162 31 180 97 0 0 chr4 29512726 29512757 -172815590 + (TATATG)n Simple_repeat Simple_repeat 4 34 0 185 311 94 57 chr4 29513027 29513133 -172815214 + L2 LINE L2 3199 3308 -5 522 285 140 0 chr4 29513905 29514112 -172814235 + MIR SINE MIR 1 236 -26 1699 207 3 0 chr4 29515306 29515601 -172812746 + AluJb SINE Alu 1 296 -16 356 163 35 23 chr4 29515994 29516080 -172812267 - L1ME4a LINE L1 -9 6112 6026 1839 226 0 29 chr4 29517677 29518053 -172810294 + MLT1A1 LTR MaLR 1 365 0 262 316 120 6 chr4 29518283 29518438 -172809909 + MIR SINE MIR 24 189 -62 1836 145 10 19 chr4 29518997 29519307 -172809040 - MER54B LTR ERVL 0 793 487 * 2119 181 11 8 chr4 29519306 29519670 -172808677 - MER54B LTR ERVL -428 365 1 694 279 110 53 chr4 29519966 29520303 -172808044 + MLT1J2 LTR MaLR 74 429 -21 4511 83 7 0 chr4 29520447 29521012 -172807335 - L1PA8 LINE L1 -3 6169 5601 263 288 0 0 chr4 29521087 29521153 -172807194 + CT-rich Low_complexity Low_complexity 1 66 0 387 348 30 73 chr4 29521153 29521386 -172806961 - L2 LINE L2 -21 3251 3029 183 42 0 0 chr4 29521762 29521786 -172806561 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 259 277 0 53 chr4 29522496 29522590 -172805757 - MIR SINE MIR -20 242 154 220 294 167 10 chr4 29522662 29522764 -172805583 + L2 LINE L2 3155 3272 0 1944 186 17 14 chr4 29524134 29524488 -172803859 + MLT1A1 LTR MaLR 10 364 -1 428 318 0 0 chr4 29524490 29524616 -172803731 - MIR SINE MIR -70 192 67 2218 238 61 23 chr4 29525743 29526351 -172801996 - MLT1E2 LTR MaLR 0 626 3 200 309 99 12 chr4 29526422 29526503 -172801844 - MIR SINE MIR -102 106 19 393 248 115 0 chr4 29526542 29526655 -172801692 - MIR SINE MIR -29 233 108 967 259 55 99 chr4 29526917 29527441 -172800906 + MER34 LTR ERV1 1 501 -41 1840 135 30 76 chr4 29527605 29528002 -172800345 - MER67C LTR ERV1 -242 272 1 557 269 58 53 chr4 29528177 29528556 -172799791 + L1ME4a LINE L1 5735 6115 -6 322 266 32 0 chr4 29528936 29529030 -172799317 + L3 LINE CR1 1392 1488 -89 396 158 0 0 chr4 29529345 29529421 -172798926 + GA-rich Low_complexity Low_complexity 2 77 0 501 309 68 20 chr4 29530477 29530726 -172797621 - MIR SINE MIR 0 262 2 4537 156 86 28 chr4 29531011 29531792 -172796555 - LTR1B LTR ERV1 0 826 1 2298 197 49 33 chr4 29531845 29532357 -172795990 + MLT2B1 LTR ERVL 1 520 0 184 286 18 18 chr4 29532368 29532424 -172795923 + L2 LINE L2 3213 3268 -4 417 290 226 4 chr4 29532774 29533026 -172795321 - L2 LINE L2 -1 3312 3005 320 349 58 21 chr4 29533682 29533871 -172794476 - MIR SINE MIR -19 243 48 481 273 56 19 chr4 29534392 29534553 -172793794 + MIR3 SINE MIR 27 193 -15 342 313 9 9 chr4 29534845 29534960 -172793387 + MIR SINE MIR 100 214 -48 1159 174 18 54 chr4 29535048 29535272 -172793075 + MER20 DNA MER1_type 4 219 0 845 293 87 44 chr4 29536661 29537074 -172791273 - L2 LINE L2 -1 3312 2882 442 309 39 17 chr4 29537353 29537534 -172790813 - MIR SINE MIR -39 223 39 2320 152 31 3 chr4 29538499 29538854 -172789493 - MLT1A1 LTR MaLR 0 365 1 420 264 22 0 chr4 29539426 29539532 -172788815 + MIR SINE MIR 42 156 -52 190 394 8 16 chr4 29540686 29540813 -172787534 - MIR SINE MIR -67 141 16 198 103 0 0 chr4 29541574 29541603 -172786744 + (GGGA)n Simple_repeat Simple_repeat 4 32 0 390 331 40 13 chr4 29542482 29542633 -172785714 - MIR SINE MIR 0 262 108 502 265 76 68 chr4 29542813 29543062 -172785285 - MLT1K LTR MaLR -43 545 295 2094 126 80 37 chr4 29543083 29543432 -172784915 - THE1B LTR MaLR 0 364 1 223 259 0 0 chr4 29543720 29543774 -172784573 + MIR3 SINE MIR 143 196 -12 267 31 0 0 chr4 29544869 29544901 -172783446 + (TA)n Simple_repeat Simple_repeat 2 33 0 2166 105 0 0 chr4 29544901 29545186 -172783161 - AluSq SINE Alu -28 285 1 2250 111 0 0 chr4 29545404 29545701 -172782646 + AluSx SINE Alu 1 297 -15 209 186 0 0 chr4 29546047 29546090 -172782257 + (TGAG)n Simple_repeat Simple_repeat 2 44 0 28 79 0 0 chr4 29547948 29548011 -172780336 + AT_rich Low_complexity Low_complexity 1 63 0 220 259 185 0 chr4 29548579 29548660 -172779687 + MIR SINE MIR 117 212 -50 251 299 34 95 chr4 29549227 29549374 -172778973 - MIR SINE MIR -74 188 51 211 212 96 123 chr4 29549691 29549837 -172778510 + MIR SINE MIR 103 244 -18 1716 191 82 9 chr4 29550314 29550654 -172777693 - MLT1A1 LTR MaLR 0 365 1 308 297 104 25 chr4 29551504 29551706 -172776641 - MIR SINE MIR -12 250 33 270 0 0 0 chr4 29551778 29551808 -172776539 + (TC)n Simple_repeat Simple_repeat 1 30 0 183 129 0 0 chr4 29552459 29552490 -172775857 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 31 0 0 0 chr4 29552923 29552954 -172775393 + AT_rich Low_complexity Low_complexity 1 31 0 338 250 25 0 chr4 29553055 29553135 -172775212 + MLT1L LTR MaLR 195 276 -339 189 243 140 37 chr4 29554433 29554540 -172773807 + MIR3 SINE MIR 90 207 -1 412 300 8 8 chr4 29555028 29555158 -172773189 + MER94 DNA DNA 2 131 -3 180 269 54 43 chr4 29555297 29555390 -172772957 - L3 LINE CR1 -80 1497 1404 711 219 72 75 chr4 29556255 29556394 -172771953 + MLT1J2 LTR MaLR 3 142 -308 2019 140 7 3 chr4 29556394 29556694 -172771653 - AluSx SINE Alu -11 301 1 711 219 72 75 chr4 29556694 29556819 -172771528 + MLT1J2 LTR MaLR 142 266 -184 1006 189 49 0 chr4 29556833 29557018 -172771329 + MER58A DNA MER1_type 12 205 -19 272 217 50 0 chr4 29557077 29557137 -172771210 - MLT1J2 LTR MaLR -129 321 259 283 229 57 0 chr4 29557290 29557360 -172770987 + MLT1J2 LTR MaLR 346 419 -31 310 200 40 27 chr4 29559560 29559635 -172768712 - MER116 DNA Mariner -4 76 1 310 258 55 55 chr4 29559723 29559851 -172768496 + MIR SINE MIR 20 147 -115 219 225 188 0 chr4 29560050 29560130 -172768217 - L2 LINE L2 -6 3266 3172 323 352 120 0 chr4 29561095 29561237 -172767110 - MIR3 SINE MIR -48 160 2 858 282 95 14 chr4 29561389 29561758 -172766589 - MLT1L LTR MaLR -40 575 177 303 274 65 48 chr4 29562498 29562622 -172765725 + MIR SINE MIR 20 145 -117 219 103 0 0 chr4 29562628 29562667 -172765680 + (A)n Simple_repeat Simple_repeat 1 39 0 722 179 0 133 chr4 29562805 29563023 -172765324 + MER53 DNA DNA 1 189 0 22 0 0 0 chr4 29563721 29563743 -172764604 + AT_rich Low_complexity Low_complexity 1 22 0 2026 129 0 19 chr4 29565447 29565757 -172762590 - AluSq SINE Alu -7 306 3 207 146 0 0 chr4 29566175 29566216 -172762131 + (GA)n Simple_repeat Simple_repeat 1 41 0 712 322 83 44 chr4 29566743 29567178 -172761169 - L3 LINE CR1 -1 1576 1125 434 346 54 10 chr4 29567232 29567437 -172760910 - MIR SINE MIR -44 218 5 228 350 0 12 chr4 29567476 29567556 -172760791 - L3 LINE CR1 -488 1089 1011 251 54 0 27 chr4 29567751 29567788 -172760559 + Alu SINE Alu 1 36 -266 1452 121 0 19 chr4 29568300 29568515 -172759832 + AluSg/x SINE Alu 82 292 -20 185 0 40 0 chr4 29568521 29568546 -172759801 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1775 77 0 17 chr4 29568683 29568918 -172759429 - AluSg/x SINE Alu 0 310 80 291 125 71 18 chr4 29569646 29569702 -172758645 + MLT1D LTR MaLR 426 484 -21 1916 147 3 7 chr4 29569806 29570098 -172758249 - AluJo SINE Alu -21 291 1 300 253 51 108 chr4 29570153 29570311 -172758036 + MER5A DNA MER1_type 29 188 -1 2350 172 93 25 chr4 29570327 29570786 -172757561 - MLT1D LTR MaLR 0 505 12 1991 171 33 28 chr4 29570786 29571148 -172757199 - THE1B LTR MaLR 0 364 1 2350 172 93 25 chr4 29571148 29571160 -172757187 - MLT1D LTR MaLR -493 12 2 620 196 0 0 chr4 29572086 29572193 -172756154 - MLT1A2 LTR MaLR -4 370 264 277 191 48 16 chr4 29572195 29572258 -172756089 - MLT1A2 LTR MaLR -309 65 1 735 294 39 57 chr4 29572775 29573160 -172755187 - LTR16B LTR ERVL -86 378 1 201 132 0 0 chr4 29573291 29573329 -172755018 + (TCCCC)n Simple_repeat Simple_repeat 5 42 0 224 154 19 0 chr4 29573854 29573906 -172754441 + (TAAA)n Simple_repeat Simple_repeat 3 55 0 1444 237 69 37 chr4 29574100 29574475 -172753872 - MSTD LTR MaLR -4 392 6 288 365 29 0 chr4 29574483 29574620 -172753727 + MIR3 SINE MIR 37 177 -31 183 242 106 30 chr4 29575219 29575285 -172753062 - L2 LINE L2 -16 3256 3186 860 227 66 110 chr4 29576062 29576590 -172751757 - MLT1D LTR MaLR 0 505 1 234 318 40 32 chr4 29576749 29576875 -172751472 + L2 LINE L2 2708 2834 -480 420 158 1 0 chr4 29576896 29576974 -172751373 + L1M2 LINE L1 5464 5545 -579 1742 161 192 8 chr4 29576975 29577329 -172751018 + MSTA LTR MaLR 2 420 -8 1416 82 16 0 chr4 29577330 29577513 -172750834 + L1M2 LINE L1 5539 5724 -576 244 293 13 0 chr4 29577817 29577892 -172750455 + L2 LINE L2 3235 3310 -3 44127 31 21 1 chr4 29578735 29584767 -172743580 - L1PA2 LINE L1 0 6155 1 4831 105 7 50 chr4 29585383 29586107 -172742240 - L1PA11 LINE L1 0 6174 5482 4391 157 52 33 chr4 29586220 29587022 -172741325 + L1MB1 LINE L1 5303 6123 -45 2428 55 0 48 chr4 29587022 29587332 -172741015 + AluY SINE Alu 1 295 -16 4391 157 52 33 chr4 29587332 29587374 -172740973 + L1MB1 LINE L1 6123 6163 -5 280 271 35 83 chr4 29588791 29588935 -172739412 - MER5A DNA MER1_type -1 188 52 672 304 42 82 chr4 29589254 29589451 -172738896 + L2 LINE L2 2804 3007 -306 2337 91 10 0 chr4 29589451 29589749 -172738598 - AluSc SINE Alu -8 301 1 672 304 42 82 chr4 29589749 29589892 -172738455 + L2 LINE L2 3007 3186 -127 34 65 0 0 chr4 29589892 29589954 -172738393 + AT_rich Low_complexity Low_complexity 1 62 0 672 304 42 82 chr4 29589954 29590024 -172738323 + L2 LINE L2 3186 3257 -56 706 203 141 52 chr4 29590365 29590557 -172737790 - MIR SINE MIR -3 259 51 817 308 43 69 chr4 29590695 29591156 -172737191 - LTR67 LTR ERVL 0 557 109 938 248 82 88 chr4 29591757 29592333 -172736014 + Charlie8 DNA MER1_type 87 658 -1759 2024 196 27 46 chr4 29592556 29593030 -172735317 + MLT1C LTR MaLR 3 467 0 21 36 0 0 chr4 29593875 29593903 -172734444 + AT_rich Low_complexity Low_complexity 1 28 0 849 251 89 52 chr4 29594610 29595163 -172733184 - L1ME3 LINE L1 -332 5830 5258 1508 188 4 11 chr4 29595174 29595440 -172732907 - AluJo SINE Alu -48 264 1 1420 300 115 30 chr4 29595503 29596978 -172731369 - L1ME3 LINE L1 -946 5200 3600 3088 147 0 8 chr4 29597043 29597533 -172730814 - L1PA16 LINE L1 -11 6155 5670 2393 153 26 5 chr4 29597533 29598103 -172730244 + L1PA16 LINE L1 5081 5660 -506 393 283 132 46 chr4 29598999 29599053 -172729294 - L1ME3 LINE L1 -2953 3193 3145 685 182 0 38 chr4 29599053 29599185 -172729162 - FLAM_C SINE Alu -2 131 5 393 283 132 46 chr4 29599185 29599434 -172728913 - L1ME3 LINE L1 -3001 3145 2864 556 256 8 0 chr4 29599503 29599632 -172728715 + MIR SINE MIR 123 252 -10 1876 123 25 7 chr4 29599646 29599923 -172728424 - AluSx SINE Alu -30 282 1 24 67 0 0 chr4 29600534 29600579 -172727768 + AT_rich Low_complexity Low_complexity 1 45 0 500 332 10 48 chr4 29600604 29600812 -172727535 - MIR SINE MIR -55 207 8 263 293 112 17 chr4 29601063 29601179 -172727168 - MIR SINE MIR -129 133 7 301 348 70 37 chr4 29601340 29601527 -172726820 - MIR SINE MIR -51 211 19 1303 271 68 58 chr4 29602080 29602597 -172725750 - MLT1F LTR MaLR -2 540 19 426 281 77 32 chr4 29602606 29602891 -172725456 + L1MEd LINE L1 560 857 -5262 891 294 86 10 chr4 29602914 29603299 -172725048 + HAL1 LINE L1 101 514 -1993 8928 167 6 29 chr4 29603318 29604101 -172724246 + L1P5 LINE L1 3469 4268 -1883 2306 119 0 0 chr4 29604101 29604413 -172723934 + AluSx SINE Alu 1 312 0 8928 167 6 29 chr4 29604413 29606009 -172722338 + L1P5 LINE L1 4268 5790 -361 304 239 11 65 chr4 29606010 29606102 -172722245 - L1MC4 LINE L1 -1344 6698 6612 326 204 27 20 chr4 29606102 29606249 -172722098 + (TA)n Simple_repeat Simple_repeat 1 148 0 2626 105 0 0 chr4 29606303 29606673 -172721674 + L1PB1 LINE L1 5782 6151 0 1731 234 168 67 chr4 29606777 29607359 -172720988 - MLT1E2 LTR MaLR -3 623 11 289 284 59 0 chr4 29607737 29607839 -172720508 - MLT1J2 LTR MaLR -289 161 54 1475 267 44 47 chr4 29608350 29608942 -172719405 + MLT1G LTR MaLR 1 590 0 309 200 111 11 chr4 29608945 29609035 -172719312 + MLT1G-int LTR MaLR 4 102 -1269 276 335 45 25 chr4 29609072 29609314 -172719033 + MLT1G-int LTR MaLR 290 536 -835 256 352 0 0 chr4 29609741 29609829 -172718518 + MLT1G-int LTR MaLR 790 877 -494 2162 99 85 46 chr4 29610153 29610565 -172717782 + MSTA LTR MaLR 1 428 0 279 325 44 9 chr4 29610662 29610776 -172717571 + MLT1G-int LTR MaLR 1253 1370 -1 952 236 101 63 chr4 29610778 29611186 -172717161 + MLT1G LTR MaLR 5 496 -94 2253 158 75 0 chr4 29611186 29611584 -172716763 - MSTC LTR MaLR 0 428 1 952 236 101 63 chr4 29611584 29611683 -172716664 + MLT1G LTR MaLR 496 590 0 1885 175 40 13 chr4 29611892 29612269 -172716078 - MLT1B LTR MaLR -2 388 2 226 179 15 15 chr4 29612326 29612393 -172715954 + (TCTA)n Simple_repeat Simple_repeat 3 69 0 1135 263 87 21 chr4 29614709 29615370 -172712977 + L1ME3 LINE L1 4963 5668 -494 719 220 89 50 chr4 29615350 29615609 -172712738 + L1ME3 LINE L1 5886 6154 -8 * 2028 233 70 11 chr4 29615625 29616152 -172712195 + MER74A LTR ERVL 1 558 0 237 132 0 0 chr4 29616536 29616574 -172711773 + (GGAA)n Simple_repeat Simple_repeat 3 40 0 1560 180 3 41 chr4 29616867 29617161 -172711186 + AluJo SINE Alu 3 285 -27 1930 52 0 4 chr4 29617496 29617744 -172710603 - L1PA5 LINE L1 -2 6152 5906 850 221 47 148 chr4 29617749 29618257 -172710090 - MER110 LTR ERV1 -11 457 1 2378 133 5 19 chr4 29619021 29619390 -172708957 + THE1B LTR MaLR 1 364 0 11090 96 1 66 chr4 29619390 29619760 -172708587 + THE1B-int LTR MaLR 1 393 -1187 653 105 11 0 chr4 29619760 29619926 -172708421 - AluY SINE Alu 0 354 188 11090 96 1 66 chr4 29619926 29621148 -172707199 + THE1B-int LTR MaLR 393 1579 -1 2228 122 28 19 chr4 29621149 29621510 -172706837 + THE1B LTR MaLR 1 364 0 343 204 71 18 chr4 29621553 29621666 -172706681 + L1ME3 LINE L1 6037 6155 -7 978 276 94 10 chr4 29621666 29621963 -172706384 + MER74B LTR ERVL 48 369 -253 23 68 0 0 chr4 29622906 29622950 -172705397 + AT_rich Low_complexity Low_complexity 1 44 0 745 276 11 0 chr4 29623040 29623225 -172705122 - MER58A DNA MER1_type -37 187 1 1591 170 16 52 chr4 29623958 29624264 -172704083 - AluJb SINE Alu -17 295 1 5043 62 3 0 chr4 29624516 29625161 -172703186 - L1PA8 LINE L1 -9 6163 5517 21 57 0 0 chr4 29625217 29625252 -172703095 + AT_rich Low_complexity Low_complexity 1 35 0 256 311 19 75 chr4 29625262 29625392 -172702955 + MER5B DNA MER1_type 54 188 -1 462 331 63 44 chr4 29626297 29626662 -172701685 - L1MCa LINE L1 -4639 1787 1416 1179 241 134 18 chr4 29626712 29627256 -172701091 - L1M4 LINE L1 -1754 4392 3786 768 357 45 34 chr4 29627320 29627959 -172700388 - L1MCa LINE L1 -5631 976 331 23 0 0 0 chr4 29628153 29628176 -172700171 + AT_rich Low_complexity Low_complexity 1 23 0 360 375 58 8 chr4 29630161 29630401 -172697946 - L1M4 LINE L1 -1876 4270 4019 22 0 0 0 chr4 29630421 29630443 -172697904 + AT_rich Low_complexity Low_complexity 1 22 0 464 324 92 57 chr4 29630608 29631417 -172696930 - L1M4 LINE L1 -2375 3771 2935 1770 171 61 6 chr4 29631678 29632022 -172696325 - MLT1A1 LTR MaLR 0 365 3 32 0 0 0 chr4 29632261 29632293 -172696054 + AT_rich Low_complexity Low_complexity 1 32 0 593 313 86 19 chr4 29633346 29634053 -172694294 + L1MEc LINE L1 1921 2643 -3572 884 294 140 8 chr4 29634063 29634819 -172693528 + L1MEc LINE L1 3819 4674 -1541 2396 164 42 4 chr4 29635066 29635548 -172692799 + L1MB3 LINE L1 5682 6181 -2 186 71 0 0 chr4 29635717 29635745 -172692602 + (TTAAA)n Simple_repeat Simple_repeat 3 30 0 951 346 46 40 chr4 29635861 29636532 -172691815 - L2 LINE L2 -2351 963 289 7331 30 8 0 chr4 29636593 29637476 -172690871 - L1PA3 LINE L1 0 6155 5260 2589 205 34 33 chr4 29637728 29638373 -172689974 + L1MA10 LINE L1 5670 6315 -19 2206 65 0 14 chr4 29638640 29638917 -172689430 - AluY SINE Alu -8 303 31 286 315 56 37 chr4 29639426 29639588 -172688759 - MIR SINE MIR -45 217 53 420 335 49 65 chr4 29640281 29640526 -172687821 - MIR SINE MIR -10 252 12 248 61 0 0 chr4 29640710 29640743 -172687604 - MLT2F LTR ERVL 0 663 631 180 152 0 0 chr4 29640789 29640822 -172687525 + (TG)n Simple_repeat Simple_repeat 2 34 0 1207 217 53 45 chr4 29640831 29641168 -172687179 - MLT2C1 LTR ERVL -57 340 1 185 449 9 0 chr4 29641197 29641304 -172687043 - L2 LINE L2 -212 3060 2953 185 303 0 53 chr4 29641328 29641404 -172686943 + L2 LINE L2 3147 3218 -54 197 340 123 9 chr4 29641758 29641864 -172686483 - MIR SINE MIR -28 234 117 200 351 0 43 chr4 29642045 29642139 -172686208 + MIR SINE MIR 34 123 -85 1538 186 25 6 chr4 29642193 29642547 -172685800 - L1 LINE L1 -1579 4567 4207 4944 177 8 9 chr4 29642548 29643467 -172684880 + L1MA4 LINE L1 5373 6290 -10 468 226 161 26 chr4 29643549 29643704 -172684643 - MIR SINE MIR -6 256 81 304 258 125 16 chr4 29644530 29644714 -172683633 + L1ME LINE L1 5564 5762 -359 444 292 55 58 chr4 29644719 29645082 -172683265 + L1ME LINE L1 2469 2830 -3316 393 328 75 15 chr4 29645096 29645400 -172682947 + L1ME LINE L1 5241 5559 -562 260 252 149 19 chr4 29645471 29645578 -172682769 + L1ME LINE L1 5678 5798 -323 1915 153 33 81 chr4 29645746 29645991 -172682356 + MLT2A2 LTR ERVL 3 258 -296 2295 99 0 22 chr4 29645991 29646303 -172682044 - AluSx SINE Alu -7 305 1 1915 153 33 81 chr4 29646303 29646625 -172681722 + MLT2A2 LTR ERVL 258 554 0 209 105 35 35 chr4 29646795 29646852 -172681495 + CT-rich Low_complexity Low_complexity 4 60 0 1652 107 9 0 chr4 29647114 29647356 -172680991 + AluSc SINE Alu 63 306 0 23 0 0 0 chr4 29647421 29647444 -172680903 + AT_rich Low_complexity Low_complexity 1 23 0 747 203 40 70 chr4 29647489 29647716 -172680631 - L1MA9 LINE L1 0 6312 6093 423 0 0 0 chr4 29648825 29648872 -172679475 + (TG)n Simple_repeat Simple_repeat 2 48 0 349 316 203 0 chr4 29649752 29649885 -172678462 + MIR3 SINE MIR 38 197 -11 746 197 0 0 chr4 29649954 29650086 -172678261 - FLAM_C SINE Alu 0 133 2 821 208 25 0 chr4 29650565 29650724 -172677623 + FAM SINE Alu 1 163 -12 264 149 0 0 chr4 29651664 29651711 -172676636 + (TG)n Simple_repeat Simple_repeat 2 48 0 231 213 9 37 chr4 29652933 29653041 -172675306 + (TATAA)n Simple_repeat Simple_repeat 3 107 0 328 299 51 0 chr4 29653049 29653166 -172675181 - MIR SINE MIR -32 230 108 441 274 86 46 chr4 29653408 29653605 -172674742 - MIR SINE MIR -14 248 44 * 458 301 152 15 chr4 29653592 29653981 -172674366 + L2 LINE L2 1415 1856 -1458 331 224 20 20 chr4 29654205 29654303 -172674044 + CT-rich Low_complexity Low_complexity 3 100 0 494 333 75 17 chr4 29654542 29654902 -172673445 - L1ME LINE L1 -2984 3096 2716 394 322 70 23 chr4 29655716 29655930 -172672417 + MIR SINE MIR 21 244 -18 1739 128 0 0 chr4 29656224 29656490 -172671857 - L1PB1 LINE L1 -7 6144 5879 248 375 121 12 chr4 29656808 29657056 -172671291 + L2 LINE L2 2804 3078 -194 604 241 64 42 chr4 29657158 29657469 -172670878 - L1ME LINE L1 -5176 894 577 457 241 68 119 chr4 29657579 29657815 -172670532 - L1ME LINE L1 -5513 557 334 237 139 0 0 chr4 29657815 29657858 -172670489 + (T)n Simple_repeat Simple_repeat 1 43 0 4112 39 0 0 chr4 29657861 29658352 -172669995 - L1PA3 LINE L1 -3 6152 5662 839 281 35 26 chr4 29658354 29658695 -172669652 - L1ME LINE L1 -5723 347 4 412 300 108 58 chr4 29658829 29659052 -172669295 - MIR SINE MIR 0 262 29 410 39 0 0 chr4 29659410 29659462 -172668885 + MADE1 DNA Mariner 1 52 -28 902 281 90 59 chr4 29661364 29662112 -172666235 - L1MEc LINE L1 -4309 2087 1317 1272 88 56 70 chr4 29662125 29662340 -172666007 - AluY SINE Alu 0 311 100 359 351 45 0 chr4 29662341 29662475 -172665872 + MIR3 SINE MIR 50 189 -19 257 271 62 70 chr4 29662757 29662886 -172665461 - MIR SINE MIR -12 250 123 949 257 159 34 chr4 29663075 29663546 -172664801 - MLT1H LTR MaLR 0 549 20 653 200 0 0 chr4 29663776 29663891 -172664456 + AluJb SINE Alu 186 300 -12 1202 186 15 47 chr4 29664242 29664516 -172663831 + AluJo SINE Alu 39 303 -9 2310 143 17 23 chr4 29664660 29665103 -172663244 - L1MA5 LINE L1 -27 6273 5831 226 261 0 0 chr4 29665364 29665433 -172662914 - MLT1H-int LTR MaLR -904 467 399 335 253 0 11 chr4 29665553 29665640 -172662707 - MLT1H-int LTR MaLR -1277 94 9 678 182 18 0 chr4 29665648 29665790 -172662557 - MLT1H LTR MaLR 0 549 431 358 280 63 21 chr4 29665900 29666043 -172662304 - MLT1H LTR MaLR -387 162 14 1499 295 47 31 chr4 29666714 29667310 -172661037 - MLT1G LTR MaLR -17 573 1 255 194 194 0 chr4 29668936 29669003 -172659344 + MIR SINE MIR 74 153 -109 369 0 0 0 chr4 29669375 29669416 -172658931 + (CA)n Simple_repeat Simple_repeat 2 42 0 2104 98 0 70 chr4 29669665 29669993 -172658354 + AluSc SINE Alu 1 305 -4 302 295 66 16 chr4 29670042 29670225 -172658122 - L2 LINE L2 -1437 1877 1686 744 350 99 4 chr4 29670243 29670706 -172657641 - L2 LINE L2 -1761 1553 1047 603 281 60 36 chr4 29670724 29670973 -172657374 + L2 LINE L2 2177 2431 -883 203 59 0 29 chr4 29670981 29671015 -172657332 + (TCC)n Simple_repeat Simple_repeat 2 34 0 1537 149 0 109 chr4 29671015 29671337 -172657010 - AluJb SINE Alu -21 291 5 24 32 0 0 chr4 29671453 29671484 -172656863 + AT_rich Low_complexity Low_complexity 1 31 0 424 235 0 0 chr4 29671695 29671776 -172656571 - MER21B LTR ERV1 -498 365 285 258 32 0 0 chr4 29671844 29671875 -172656472 + (TG)n Simple_repeat Simple_repeat 2 32 0 1488 135 0 44 chr4 29671876 29672128 -172656219 + MER21A LTR ERV1 24 264 -667 2921 169 37 46 chr4 29672133 29672694 -172655653 + MER21A LTR ERV1 376 931 0 26 64 0 0 chr4 29672788 29672835 -172655512 + AT_rich Low_complexity Low_complexity 1 47 0 218 85 21 43 chr4 29673041 29673088 -172655259 + (TA)n Simple_repeat Simple_repeat 2 47 0 217 292 35 88 chr4 29673105 29673276 -172655071 + L2 LINE L2 3152 3313 0 580 285 142 11 chr4 29673305 29673565 -172654782 - L2 LINE L2 -2301 1013 720 803 280 111 47 chr4 29673820 29674245 -172654102 - MLT1J LTR MaLR -35 476 25 2260 315 68 62 chr4 29674420 29675123 -172653224 + HERV16 LTR ERVL 1601 2317 -2679 428 0 19 0 chr4 29675123 29675175 -172653172 + (CA)n Simple_repeat Simple_repeat 2 54 0 2260 315 68 62 chr4 29675175 29675814 -172652533 + HERV16 LTR ERVL 2317 2951 -2045 232 296 111 0 chr4 29675817 29675925 -172652422 + L3 LINE CR1 298 417 -1160 326 318 23 16 chr4 29675927 29676056 -172652291 + HERV16 LTR ERVL 3099 3228 -2536 2185 338 82 34 chr4 29676128 29678001 -172650346 + HERV16 LTR ERVL 3382 5344 -420 1357 285 22 53 chr4 29678012 29678274 -172650073 - L1ME3A LINE L1 -77 6093 5825 1263 51 0 0 chr4 29678274 29678432 -172649915 - L1PA4 LINE L1 -3 6152 5995 1357 285 22 53 chr4 29678432 29678791 -172649556 - L1ME3A LINE L1 -345 5825 5491 2273 198 19 0 chr4 29678821 29679236 -172649111 + L1MC4a LINE L1 146 568 -5972 2508 90 0 0 chr4 29679429 29679741 -172648606 - AluSx SINE Alu 0 312 1 23 0 0 0 chr4 29680115 29680138 -172648209 + AT_rich Low_complexity Low_complexity 1 23 0 1594 167 91 23 chr4 29682045 29682387 -172645960 + MLT1A1 LTR MaLR 1 365 0 21 57 0 0 chr4 29683363 29683398 -172644949 + AT_rich Low_complexity Low_complexity 1 35 0 1679 174 0 43 chr4 29684224 29684529 -172643818 + AluJo SINE Alu 3 294 -18 2014 112 0 3 chr4 29684753 29685038 -172643309 - AluSx SINE Alu -2 310 27 1549 196 3 28 chr4 29685038 29685353 -172642994 - AluJo SINE Alu -3 309 1 24 32 0 0 chr4 29685415 29685446 -172642901 + AT_rich Low_complexity Low_complexity 1 31 0 26 30 0 0 chr4 29685519 29685552 -172642795 + AT_rich Low_complexity Low_complexity 1 33 0 2076 270 114 52 chr4 29685634 29686788 -172641559 + L1MC4a LINE L1 1254 2336 -4204 2196 164 68 40 chr4 29686788 29687030 -172641317 + LTR64 LTR ERVK 1 235 -278 2134 123 3 0 chr4 29687030 29687332 -172641015 - AluSx SINE Alu -9 303 1 2196 164 68 40 chr4 29687332 29687588 -172640759 + LTR64 LTR ERVK 235 513 0 2076 270 114 52 chr4 29687588 29688742 -172639605 + L1MC4a LINE L1 2336 3728 -2812 724 238 38 11 chr4 29688745 29688930 -172639417 + L1M2a LINE L1 83 272 -6896 * 2688 288 55 11 chr4 29688927 29689742 -172638605 + L1M2a LINE L1 986 1836 -5332 231 58 19 58 chr4 29689795 29689847 -172638500 + (TTTTTA)n Simple_repeat Simple_repeat 4 53 0 315 315 44 49 chr4 29690690 29691077 -172637270 + L1MC4a LINE L1 5101 5485 -1055 1140 240 100 69 chr4 29691251 29691900 -172636447 + L1MC4a LINE L1 5648 6316 -1886 277 285 90 40 chr4 29692731 29692931 -172635416 + L2 LINE L2 3104 3313 0 304 132 44 0 chr4 29693139 29693207 -172635140 + GA-rich Low_complexity Low_complexity 2 72 0 888 219 0 21 chr4 29693354 29693541 -172634806 - MLT1E3 LTR MaLR -387 237 55 1379 164 15 15 chr4 29694827 29695101 -172633246 - HSMAR2 DNA Mariner 0 1302 1029 22528 153 6 12 chr4 29695132 29699146 -172629201 + L1P3 LINE L1 1094 5090 -1371 4005 75 59 41 chr4 29699133 29699410 -172628937 + L1PA8A LINE L1 5487 5758 -373 * 2164 105 3 16 chr4 29699410 29699716 -172628631 + AluSp SINE Alu 5 306 -7 4005 75 59 41 chr4 29699716 29700052 -172628295 + L1PA8A LINE L1 5758 6111 -20 222 37 0 0 chr4 29700363 29700390 -172627957 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 631 149 11 0 chr4 29700390 29700484 -172627863 - FLAM_A SINE Alu -31 111 17 2742 130 18 7 chr4 29700489 29700934 -172627413 - HSMAR2 DNA Mariner -851 451 2 29 0 0 0 chr4 29702313 29702342 -172626005 + AT_rich Low_complexity Low_complexity 1 29 0 283 211 40 34 chr4 29702395 29702570 -172625777 + (TTATA)n Simple_repeat Simple_repeat 5 180 0 455 217 70 0 chr4 29702912 29703027 -172625320 + MER3 DNA MER1_type 48 123 -86 595 185 80 0 chr4 29703039 29703201 -172625146 + MER3 DNA MER1_type 2449 2623 0 181 341 123 24 chr4 29703539 29703709 -172624638 - MIR SINE MIR -55 207 21 342 105 8 20 chr4 29704866 29704935 -172623412 + AluSp/q SINE Alu 249 303 0 315 315 44 49 chr4 29705210 29705597 -172622750 - L1M4 LINE L1 -1055 6112 5728 231 58 19 58 chr4 29706440 29706492 -172621855 + (TAAAAA)n Simple_repeat Simple_repeat 4 53 0 2688 288 55 11 chr4 29706545 29707360 -172620987 - L1M4 LINE L1 -5332 1836 986 724 238 38 11 chr4 29707357 29707542 -172620805 - L1M4 LINE L1 -6896 272 83 * 2076 271 113 49 chr4 29707545 29708699 -172619648 - L1MDa LINE L1 -2812 3728 2649 2196 164 68 40 chr4 29708699 29708955 -172619392 - LTR64 LTR ERVK 0 513 266 2134 123 3 0 chr4 29708955 29709257 -172619090 + AluSx SINE Alu 1 303 -9 2196 164 68 40 chr4 29709257 29709499 -172618848 - LTR64 LTR ERVK -247 266 1 2076 271 113 49 chr4 29709499 29710653 -172617694 - L1MDa LINE L1 -3891 2649 1254 26 30 0 0 chr4 29710735 29710768 -172617579 + AT_rich Low_complexity Low_complexity 1 33 0 24 32 0 0 chr4 29710841 29710872 -172617475 + AT_rich Low_complexity Low_complexity 1 31 0 1549 196 3 28 chr4 29710934 29711251 -172617096 + AluJo SINE Alu 1 309 -3 1858 127 0 4 chr4 29711251 29711532 -172616815 + AluSq SINE Alu 27 308 0 248 343 103 23 chr4 29711804 29712104 -172616243 - L1MDa LINE L1 -6017 704 381 329 85 0 0 chr4 29712197 29712244 -172616103 - MADE1 DNA Mariner 0 80 34 937 270 123 22 chr4 29712265 29712769 -172615578 + L1ME4a LINE L1 5556 6110 -11 253 253 101 0 chr4 29712887 29712966 -172615381 - L1MC4 LINE L1 -1339 6703 6617 1939 121 3 34 chr4 29712972 29713294 -172615053 - AluSx SINE Alu 0 312 1 4266 172 47 2 chr4 29713303 29714116 -172614231 - L1MB1 LINE L1 0 6168 5320 224 303 92 13 chr4 29715096 29715172 -172613175 - MIR SINE MIR -165 97 16 2388 75 0 0 chr4 29715180 29715475 -172612872 - AluSc SINE Alu -12 297 3 1801 126 0 7 chr4 29715536 29715807 -172612540 + AluY SINE Alu 11 279 -32 324 0 0 0 chr4 29715807 29715843 -172612504 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 1211 128 0 0 chr4 29715843 29716023 -172612324 + AluSg/x SINE Alu 129 308 -2 1649 177 0 46 chr4 29716251 29716556 -172611791 - AluJo SINE Alu -19 293 3 21 57 0 0 chr4 29717381 29717416 -172610931 + AT_rich Low_complexity Low_complexity 1 35 0 1594 167 91 23 chr4 29718392 29718734 -172609613 - MLT1A1 LTR MaLR 0 365 1 1955 161 0 0 chr4 29719164 29719477 -172608870 + AluSc SINE Alu 1 309 0 516 314 76 30 chr4 29720438 29720619 -172607728 - L2 LINE L2 -8 3305 3134 2228 114 0 16 chr4 29720619 29720936 -172607411 + AluSx SINE Alu 1 312 0 516 314 76 30 chr4 29720936 29720950 -172607397 - L2 LINE L2 -179 3134 3122 2005 172 42 51 chr4 29720950 29721421 -172606926 - MLT1C LTR MaLR 0 467 1 516 314 76 30 chr4 29721421 29721812 -172606535 - L2 LINE L2 -191 3122 2683 23 0 0 0 chr4 29722754 29722777 -172605570 + AT_rich Low_complexity Low_complexity 1 23 0 442 271 0 0 chr4 29723205 29723301 -172605046 - MER81 DNA DNA -1 113 18 7245 42 10 0 chr4 29723723 29725329 -172603018 + L1PA4 LINE L1 4537 6153 -2 277 291 97 36 chr4 29725342 29725538 -172602809 + MIR SINE MIR 53 260 -2 410 286 77 6 chr4 29726928 29727096 -172601251 + MIR SINE MIR 21 200 -62 2177 98 14 0 chr4 29728529 29728824 -172599523 + AluSp SINE Alu 1 299 -14 21 36 0 0 chr4 29731979 29732007 -172596340 + AT_rich Low_complexity Low_complexity 1 28 0 2580 45 0 10 chr4 29732618 29732932 -172595415 + AluY SINE Alu 1 311 0 293 201 26 122 chr4 29733354 29733543 -172594804 - MER112 DNA MER1_type -89 171 1 262 274 39 10 chr4 29734027 29734129 -172594218 + MIR3 SINE MIR 99 203 -5 181 422 0 11 chr4 29734476 29734566 -172593781 - MIR SINE MIR -170 92 4 229 65 0 43 chr4 29736774 29736820 -172591527 + (GAAA)n Simple_repeat Simple_repeat 1 44 0 197 222 16 0 chr4 29737281 29737344 -172591003 + GA-rich Low_complexity Low_complexity 2 65 0 2015 70 0 0 chr4 29737635 29737878 -172590469 + AluY SINE Alu 55 297 -14 238 244 104 50 chr4 29737891 29738230 -172590117 + L1MEd LINE L1 993 1387 -4910 363 220 28 28 chr4 29738392 29738501 -172589846 - LTR16A1 LTR ERVL -2 455 347 425 281 107 15 chr4 29738571 29738841 -172589506 + L1M4 LINE L1 5002 5296 -850 1948 134 0 7 chr4 29739084 29739404 -172588943 + AluSx SINE Alu 9 326 0 234 259 44 114 chr4 29739452 29739610 -172588737 - L2 LINE L2 -3 3269 3123 196 327 111 37 chr4 29739771 29739933 -172588414 - L2 LINE L2 -410 2904 2731 524 332 40 9 chr4 29740444 29740667 -172587680 - HERV16 LTR ERVL -1715 3939 3710 798 250 109 4 chr4 29740860 29741108 -172587239 + MLT2C1 LTR ERVL 1 274 -123 1718 342 69 19 chr4 29741325 29742939 -172585408 - HERV16 LTR ERVL -2423 3341 1592 504 246 154 11 chr4 29742980 29743155 -172585192 - HERV16 LTR ERVL -4479 517 318 323 294 182 16 chr4 29743397 29743584 -172584763 - LTR16A LTR ERVL 0 450 233 2038 109 36 3 chr4 29743987 29744290 -172584057 + AluSq SINE Alu 1 313 0 536 279 67 31 chr4 29747083 29747526 -172580821 + MER109 Unknown Unknown 40 1450 -982 469 308 10 36 chr4 29747509 29747704 -172580643 + LTR33 LTR ERVL 332 521 0 * 200 394 0 0 chr4 29747762 29747833 -172580514 + L2 LINE L2 3151 3221 -51 1137 122 70 9 chr4 29747854 29748067 -172580280 + L1MA4 LINE L1 6069 6294 -6 2282 154 3 8 chr4 29748100 29748482 -172579865 - L1PB3 LINE L1 -1 6153 5774 1752 204 40 67 chr4 29748656 29749131 -172579216 + MLT1C LTR MaLR 6 467 0 871 342 82 31 chr4 29749135 29750078 -172578269 - L2 LINE L2 -1 3312 2327 2240 142 20 97 chr4 29750078 29750571 -172577776 - LTR32 LTR ERVL 0 471 17 184 292 31 15 chr4 29750572 29750637 -172577710 - L2 LINE L2 -984 2330 2265 1555 329 75 33 chr4 29750641 29751467 -172576880 - L2 LINE L2 -1537 1777 917 1165 234 24 63 chr4 29751555 29751935 -172576412 - MLT1A1 LTR MaLR 0 365 1 2300 282 93 53 chr4 29752935 29756531 -172571816 + L1MCc LINE L1 19 3828 -3113 453 249 94 11 chr4 29756570 29756751 -172571596 + L1MCc LINE L1 4368 4563 -2378 30 45 0 0 chr4 29756761 29756805 -172571542 + AT_rich Low_complexity Low_complexity 1 44 0 308 286 77 39 chr4 29756817 29756999 -172571348 + L1MCc LINE L1 4553 4741 -2200 1079 223 58 42 chr4 29757752 29758111 -172570236 - MLT1A1 LTR MaLR 0 365 1 859 186 126 5 chr4 29758117 29758316 -172570031 - MLT1A1-int LTR MaLR -7 1728 1506 446 32 143 0 chr4 29758323 29758386 -172569961 + MADE1 DNA Mariner 9 80 0 1987 227 155 44 chr4 29758548 29759455 -172568892 - MLT1A1-int LTR MaLR -229 1506 453 930 251 27 5 chr4 29759458 29759677 -172568670 - MLT1A1-int LTR MaLR -1510 225 2 1091 210 23 101 chr4 29759680 29760076 -172568271 - MLT1A1 LTR MaLR 0 365 1 738 234 37 97 chr4 29762538 29762888 -172565459 - MER68 LTR ERV1 -77 485 157 602 302 48 57 chr4 29763062 29763605 -172564742 - HAL1 LINE L1 -857 1650 1113 1307 300 134 29 chr4 29763609 29764127 -172564220 - L2 LINE L2 -43 3270 2808 1909 113 10 0 chr4 29764127 29764418 -172563929 - L1PA14 LINE L1 -4 6157 5864 1307 300 134 29 chr4 29764418 29764795 -172563552 - L2 LINE L2 -505 2808 2273 351 235 93 25 chr4 29764838 29765000 -172563347 - L1M4 LINE L1 -822 5324 5152 26 64 0 0 chr4 29765771 29765818 -172562529 + AT_rich Low_complexity Low_complexity 1 47 0 342 319 92 25 chr4 29766060 29766298 -172562049 - L1M4 LINE L1 -2742 3404 3151 27 29 0 0 chr4 29766636 29766670 -172561677 + AT_rich Low_complexity Low_complexity 1 34 0 1656 170 3 35 chr4 29767226 29767684 -172560663 - AluSx SINE Alu 0 452 4 402 245 53 32 chr4 29768053 29768263 -172560084 - L1MEd LINE L1 -4862 1257 1130 2107 96 3 25 chr4 29768997 29769311 -172559036 - AluSc SINE Alu 0 309 3 361 355 35 0 chr4 29769402 29769543 -172558804 + LTR33 LTR ERVL 51 196 -325 270 227 0 30 chr4 29769777 29769843 -172558504 + LTR33 LTR ERVL 458 521 0 27 0 0 0 chr4 29769912 29769939 -172558408 + AT_rich Low_complexity Low_complexity 1 27 0 513 289 72 119 chr4 29770083 29770636 -172557711 - L1MEd LINE L1 -5581 538 12 230 98 24 0 chr4 29771854 29771895 -172556452 + L1MC4a LINE L1 6133 6174 -1634 1597 189 7 26 chr4 29771918 29772224 -172556123 + AluJo SINE Alu 3 302 -10 829 296 80 21 chr4 29772655 29773168 -172555179 + L1MC4a LINE L1 1377 1919 -4621 1722 84 8 4 chr4 29773241 29773491 -172554856 + L1P LINE L1 4976 5226 -920 3313 38 9 7 chr4 29773504 29773925 -172554422 + L1PA8 LINE L1 5746 6167 -5 565 290 194 14 chr4 29773927 29774292 -172554055 + L1MC4a LINE L1 1963 2393 -4328 2179 288 69 18 chr4 29774384 29775636 -172552711 + L1MC4a LINE L1 3352 4667 -1873 237 219 61 35 chr4 29775653 29775767 -172552580 + L1MC4a LINE L1 4721 4837 -1703 353 263 40 41 chr4 29776323 29776605 -172551742 + L1MC4a LINE L1 6022 6194 -362 2096 177 30 13 chr4 29776611 29777007 -172551340 + MER57A LTR ERV1 1 403 0 807 216 44 20 chr4 29778943 29779147 -172549200 + MER3 DNA MER1_type 1 209 0 838 264 17 25 chr4 29779336 29779571 -172548776 - MIR SINE MIR 0 262 30 2158 102 0 0 chr4 29780315 29780599 -172547748 - AluSg SINE Alu -26 284 1 601 288 17 23 chr4 29781040 29781217 -172547130 + MLT1K LTR MaLR 290 465 -123 1706 101 0 0 chr4 29781445 29781663 -172546684 - AluSc SINE Alu -91 218 1 227 323 20 10 chr4 29782588 29782687 -172545660 - MIR SINE MIR 0 262 163 276 264 128 94 chr4 29782996 29783261 -172545086 - MLT1I LTR MaLR -8 401 128 372 304 174 13 chr4 29783349 29783579 -172544768 - MLT1J1 LTR MaLR -174 272 6 610 318 75 46 chr4 29783700 29784112 -172544235 + L2 LINE L2 2302 2725 -589 666 206 8 0 chr4 29784707 29784833 -172543514 - FLAM_A SINE Alu -6 127 1 2504 45 0 3 chr4 29784962 29785273 -172543074 + AluY SINE Alu 1 310 -1 646 238 67 0 chr4 29785356 29785520 -172542827 + MER105 DNA DNA 30 204 0 299 309 122 0 chr4 29785687 29785826 -172542521 - MIR SINE MIR 0 262 107 688 272 64 68 chr4 29786138 29786553 -172541794 - LTR35 LTR ERV1 -55 501 86 22 0 0 0 chr4 29786646 29786668 -172541679 + AT_rich Low_complexity Low_complexity 1 22 0 269 237 17 0 chr4 29787057 29787116 -172541231 + LTR40a LTR ERVL 1 60 -459 26 0 0 0 chr4 29787278 29787304 -172541043 + AT_rich Low_complexity Low_complexity 1 26 0 496 273 153 10 chr4 29787336 29787728 -172540619 + L1M4 LINE L1 4115 4562 -1584 574 275 163 0 chr4 29787888 29788128 -172540219 - Charlie2 DNA MER1_type -728 2134 1856 811 316 25 19 chr4 29788130 29788453 -172539894 - Charlie2 DNA MER1_type -2457 325 1 267 303 49 19 chr4 29789632 29789794 -172538553 - L1M4 LINE L1 -2211 3935 3769 399 179 26 0 chr4 29789794 29789872 -172538475 + MADE1 DNA Mariner 1 80 0 783 267 55 71 chr4 29790000 29790255 -172538092 + L1ME1 LINE L1 5907 6157 -27 251 331 105 8 chr4 29790384 29790508 -172537839 + MIR3 SINE MIR 30 165 -43 2138 87 21 3 chr4 29791005 29791294 -172537053 - AluSq SINE Alu -18 295 2 311 308 116 50 chr4 29791658 29791960 -172536387 + L1MEc LINE L1 37 358 -6038 356 192 14 14 chr4 29791960 29792033 -172536314 - MLT1H LTR MaLR -393 156 84 21 0 0 0 chr4 29792106 29792127 -172536220 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr4 29792729 29792767 -172535580 + AT_rich Low_complexity Low_complexity 1 38 0 524 192 156 24 chr4 29793454 29793621 -172534726 - MER53 DNA DNA 0 189 1 247 246 45 55 chr4 29793638 29793748 -172534599 + LTR67 LTR ERVL 415 523 -34 2385 48 6 22 chr4 29794403 29794719 -172533628 - L1PA4 LINE L1 0 6155 5845 256 196 71 0 chr4 29795317 29795373 -172532974 - L2 LINE L2 0 3313 3254 319 273 0 0 chr4 29795379 29795445 -172532902 - MER2 DNA MER2_type -7 338 273 469 354 71 16 chr4 29795639 29795947 -172532400 + HERVL LTR ERVL 2022 2346 -3308 711 253 0 0 chr4 29796594 29796740 -172531607 - MLT1A2 LTR MaLR -228 146 1 22 0 0 0 chr4 29796911 29796933 -172531414 + AT_rich Low_complexity Low_complexity 1 22 0 340 340 87 11 chr4 29797866 29798051 -172530296 + MIR SINE MIR 6 204 -58 1104 233 29 56 chr4 29798939 29799157 -172529190 - MLT1A1 LTR MaLR 0 365 160 1879 124 3 59 chr4 29799157 29799480 -172528867 - AluY SINE Alu -6 305 1 1104 233 29 56 chr4 29799480 29799635 -172528712 - MLT1A1 LTR MaLR -205 160 2 397 323 78 26 chr4 29801004 29801236 -172527111 + L3 LINE CR1 1202 1445 -132 192 77 0 0 chr4 29802480 29802506 -172525841 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 419 318 112 0 chr4 29802566 29802736 -172525611 - MIR SINE MIR -67 195 7 591 214 34 17 chr4 29803025 29803142 -172525205 + FLAM_C SINE Alu 7 125 -18 222 164 0 0 chr4 29803142 29803197 -172525150 + (TA)n Simple_repeat Simple_repeat 2 56 0 1759 191 12 50 chr4 29803914 29804317 -172524030 - MLT1B LTR MaLR -2 388 1 184 355 101 7 chr4 29804575 29804713 -172523634 + L3b LINE CR1 1289 1439 -144 218 370 82 20 chr4 29805425 29805571 -172522776 + MIR SINE MIR 20 174 -88 195 42 0 0 chr4 29805711 29805735 -172522612 + (T)n Simple_repeat Simple_repeat 1 24 0 312 282 0 83 chr4 29805744 29805900 -172522447 - LTR33A LTR ERVL -34 489 347 377 305 70 54 chr4 29806149 29806408 -172521939 - MLT1I LTR MaLR -19 390 128 2087 182 107 8 chr4 29807594 29808062 -172520285 - MER67D LTR ERV1 0 514 1 532 293 52 37 chr4 29808326 29808684 -172519663 - MLT1I LTR MaLR -20 389 57 234 288 0 0 chr4 29811127 29811186 -172517161 + CT-rich Low_complexity Low_complexity 2 60 0 579 320 107 13 chr4 29811467 29811701 -172516646 - MIR SINE MIR -4 258 3 730 196 8 0 chr4 29811823 29811956 -172516391 - FLAM_C SINE Alu -3 140 7 988 101 0 0 chr4 29812231 29812393 -172515954 + AluSc SINE Alu 170 331 0 253 207 52 0 chr4 29812429 29812487 -172515860 + MER58 DNA MER1_type 2359 2419 -1 27 0 0 0 chr4 29813306 29813333 -172515014 + AT_rich Low_complexity Low_complexity 1 27 0 23 33 0 0 chr4 29814596 29814626 -172513721 + AT_rich Low_complexity Low_complexity 1 30 0 207 0 0 0 chr4 29814636 29814659 -172513688 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1800 115 8 0 chr4 29814668 29814929 -172513418 - AluSx SINE Alu -44 268 6 439 243 0 0 chr4 29814932 29815006 -172513341 + MER2 DNA MER2_type 272 345 0 1839 148 7 3 chr4 29815058 29815356 -172512991 - AluJo SINE Alu -2 310 12 264 318 0 12 chr4 29816003 29816088 -172512259 + MIR SINE MIR 174 257 -5 1961 131 0 10 chr4 29816292 29816610 -172511737 - AluSq SINE Alu 0 316 2 412 273 200 0 chr4 29816705 29816855 -172511492 - MER5A DNA MER1_type 0 189 10 517 280 63 35 chr4 29816857 29817000 -172511347 + L2 LINE L2 3126 3272 0 2904 155 8 12 chr4 29817053 29817563 -172510784 - L1PB4 LINE L1 -3 6153 5646 410 109 315 22 chr4 29817670 29817762 -172510585 + LTR14B LTR ERVK 1 119 -489 1813 69 13 98 chr4 29817767 29818085 -172510262 + LTR14A LTR ERVK 54 344 0 28 29 0 0 chr4 29818483 29818518 -172509829 + AT_rich Low_complexity Low_complexity 1 35 0 1656 116 3 104 chr4 29819123 29819451 -172508896 + AluSx SINE Alu 1 295 -17 261 268 12 0 chr4 29820089 29820171 -172508176 + A-rich Low_complexity Low_complexity 1 83 0 1776 149 52 46 chr4 29820632 29821020 -172507327 - MLT1B LTR MaLR 0 390 1 27 29 0 0 chr4 29821686 29821720 -172506627 + AT_rich Low_complexity Low_complexity 1 34 0 350 228 114 72 chr4 29821751 29821988 -172506359 + MER5C DNA MER1_type 1 247 -77 231 167 0 67 chr4 29821998 29822058 -172506289 + A-rich Low_complexity Low_complexity 5 60 0 232 305 25 17 chr4 29822098 29822216 -172506131 + MIR SINE MIR 5 123 -139 605 258 26 70 chr4 29822303 29822532 -172505815 - MER20 DNA MER1_type 0 219 1 228 214 0 0 chr4 29822781 29822837 -172505510 + (TA)n Simple_repeat Simple_repeat 1 56 0 1008 193 100 43 chr4 29823046 29823346 -172505001 + MER33 DNA MER1_type 7 323 -1 33 73 0 0 chr4 29823914 29823982 -172504365 + AT_rich Low_complexity Low_complexity 1 68 0 1063 191 86 65 chr4 29824149 29824485 -172503862 + MER2 DNA MER2_type 2 344 0 23 33 0 0 chr4 29824488 29824518 -172503829 + AT_rich Low_complexity Low_complexity 1 30 0 502 220 23 69 chr4 29824526 29824699 -172503648 + MER105 DNA DNA 22 186 -18 416 322 71 29 chr4 29825514 29825939 -172502408 - L2 LINE L2 -1565 1749 1237 345 276 184 0 chr4 29826093 29826245 -172502102 + MIR SINE MIR 83 262 0 312 48 0 0 chr4 29826617 29826659 -172501688 + (TG)n Simple_repeat Simple_repeat 2 43 0 225 281 125 21 chr4 29826926 29827022 -172501325 - MER102a DNA MER1_type -6 324 219 443 302 117 28 chr4 29827404 29827583 -172500764 - MIR3 SINE MIR -2 206 12 345 265 22 73 chr4 29828770 29828906 -172499441 - L3b LINE CR1 -59 1524 1396 2118 76 0 73 chr4 29830625 29830953 -172497394 - AluY SINE Alu -7 304 1 288 380 25 0 chr4 29831895 29832095 -172496252 + MIR SINE MIR 55 259 -3 3447 199 23 6 chr4 29832478 29833203 -172495144 - L1 LINE L1 -3116 3030 2293 466 326 33 0 chr4 29836194 29836375 -172491972 - MIR SINE MIR -1 261 75 362 273 111 47 chr4 29836813 29836985 -172491362 - MLT1J LTR MaLR 0 511 329 642 271 51 28 chr4 29837058 29837272 -172491075 - MLT1J LTR MaLR -292 219 1 915 332 153 0 chr4 29839024 29839391 -172488956 + L2 LINE L2 2291 2713 -601 715 206 0 8 chr4 29839394 29839560 -172488787 + FLAM_A SINE Alu 1 165 0 611 296 62 11 chr4 29840744 29840920 -172487427 + MIR3 SINE MIR 1 185 -23 203 128 43 0 chr4 29842026 29842073 -172486274 + A-rich Low_complexity Low_complexity 2 50 0 12865 198 23 13 chr4 29842487 29848611 -172479736 - L1PA16 LINE L1 -9 6860 714 180 330 93 10 chr4 29848612 29848709 -172479638 + MIR SINE MIR 45 149 -59 192 125 0 0 chr4 29850937 29850969 -172477378 + (TTTA)n Simple_repeat Simple_repeat 3 34 0 786 93 17 0 chr4 29851064 29851182 -172477165 - L1PA6 LINE L1 -7 6147 6028 192 296 19 0 chr4 29851183 29851237 -172477110 + L2 LINE L2 3172 3226 -87 343 289 0 11 chr4 29851257 29851347 -172477000 + L1MC4 LINE L1 6614 6702 -1340 2206 121 0 9 chr4 29851848 29852163 -172476184 - AluSx SINE Alu 0 312 1 221 299 26 0 chr4 29853635 29853712 -172474635 - L2 LINE L2 -62 3251 3173 3149 42 3 0 chr4 29853829 29854214 -172474133 - L1PA4 LINE L1 -3 6152 5767 604 295 105 0 chr4 29855246 29855436 -172472911 + MIR SINE MIR 31 240 -22 206 371 40 16 chr4 29855561 29855685 -172472662 - MIR3 SINE MIR -76 132 6 304 53 0 0 chr4 29855934 29855972 -172472375 - MLT2B1 LTR ERVL -482 38 1 21 0 0 0 chr4 29856257 29856278 -172472069 + AT_rich Low_complexity Low_complexity 1 21 0 1943 198 97 11 chr4 29856548 29857013 -172471334 + MLT1D LTR MaLR 1 505 0 338 278 47 94 chr4 29857030 29857264 -172471083 - MIR SINE MIR -6 256 34 334 333 42 17 chr4 29857398 29857518 -172470829 - L2 LINE L2 -4 3268 3146 195 364 0 0 chr4 29858393 29858448 -172469899 + MIR SINE MIR 92 146 -62 193 337 152 0 chr4 29859416 29859508 -172468839 + MIR SINE MIR 137 242 -20 1551 231 72 74 chr4 29859593 29859981 -172468366 - MLT2B3 LTR ERVL 0 554 166 2470 70 0 3 chr4 29859981 29860293 -172468054 - AluY SINE Alu 0 311 1 1551 231 72 74 chr4 29860293 29860459 -172467888 - MLT2B3 LTR ERVL -388 166 1 2906 146 10 15 chr4 29860490 29861010 -172467337 - L1MA9 LINE L1 0 6312 5796 384 193 44 53 chr4 29861846 29861880 -172466467 + MER69 DNA AcHobo 2393 2426 -100 1431 223 72 56 chr4 29861880 29862377 -172465970 + MLT1D LTR MaLR 1 505 0 384 193 44 53 chr4 29862377 29862456 -172465891 + MER69 DNA AcHobo 2426 2505 -21 268 253 84 0 chr4 29863767 29863862 -172464485 - MIR SINE MIR -56 206 104 690 241 104 81 chr4 29864306 29864468 -172463879 + L1ME2 LINE L1 5711 5868 -296 1131 228 127 45 chr4 29864468 29864932 -172463415 - MLT1D LTR MaLR -3 502 1 690 241 104 81 chr4 29864932 29865213 -172463134 + L1ME2 LINE L1 5868 6164 0 492 128 0 0 chr4 29866392 29866470 -172461877 + (TCCA)n Simple_repeat Simple_repeat 4 81 0 2171 117 0 0 chr4 29867480 29867778 -172460569 + AluSq SINE Alu 1 298 -15 26 30 0 0 chr4 29867794 29867827 -172460520 + AT_rich Low_complexity Low_complexity 1 33 0 22 80 0 0 chr4 29868344 29868394 -172459953 + AT_rich Low_complexity Low_complexity 1 50 0 253 342 70 77 chr4 29868633 29868946 -172459401 + L2 LINE L2 1725 2035 -1279 901 264 154 48 chr4 29869019 29869055 -172459292 - MLT2B1 LTR ERVL -3 517 486 477 0 0 0 chr4 29869055 29869108 -172459239 + (TCTA)n Simple_repeat Simple_repeat 1 53 0 901 264 154 48 chr4 29869108 29869487 -172458860 - MLT2B1 LTR ERVL -34 486 58 2913 179 11 25 chr4 29869516 29870010 -172458337 + L1MB3 LINE L1 5529 6015 -168 2270 131 46 8 chr4 29870010 29870361 -172457986 + THE1B LTR MaLR 1 364 0 2913 179 11 25 chr4 29870361 29870437 -172457910 + L1MB3 LINE L1 6015 6091 -92 637 183 0 14 chr4 29870460 29870602 -172457745 + L1MB3 LINE L1 6044 6183 0 2327 97 0 0 chr4 29870884 29871182 -172457165 - AluSc SINE Alu -11 298 1 440 319 44 9 chr4 29873613 29873803 -172454544 - MIR SINE MIR -8 254 55 615 251 119 37 chr4 29874290 29874533 -172453814 + MLT1H LTR MaLR 43 305 -244 4671 105 3 0 chr4 29874697 29875352 -172452995 - L1PA11 LINE L1 0 6174 5518 1246 136 30 0 chr4 29875352 29875596 -172452751 + L1P4 LINE L1 5210 5459 -709 328 224 24 0 chr4 29875596 29875681 -172452666 + MLT1H LTR MaLR 463 549 0 1262 39 13 0 chr4 29876259 29876413 -172451934 - L1PA3 LINE L1 -2 6153 5998 3685 82 224 2 chr4 29876753 29877316 -172451031 - LTR12 LTR ERV1 0 688 1 2015 112 20 0 chr4 29877404 29877699 -172450648 - AluSq SINE Alu -12 301 1 219 288 198 0 chr4 29877888 29877999 -172450348 - L2 LINE L2 -1 3312 3180 222 105 0 0 chr4 29878081 29878119 -172450228 + (A)n Simple_repeat Simple_repeat 1 38 0 306 345 55 19 chr4 29878254 29878594 -172449753 + MLT1I LTR MaLR 31 409 0 229 306 271 7 chr4 29881078 29881222 -172447125 + MER5A DNA MER1_type 2 183 -6 2047 103 27 10 chr4 29881532 29881824 -172446523 + AluSx SINE Alu 5 301 -11 331 247 78 32 chr4 29882297 29882451 -172445896 - MER103 DNA DNA 0 166 6 192 77 0 0 chr4 29884882 29884908 -172443439 + (TA)n Simple_repeat Simple_repeat 1 26 0 315 330 0 0 chr4 29885071 29885159 -172443188 - L1MC4 LINE L1 -1341 6701 6614 308 250 36 0 chr4 29885087 29885171 -172443176 + L1MC4 LINE L1 6614 6700 -1342 * 334 276 23 0 chr4 29885171 29885258 -172443089 + L1MC4 LINE L1 6612 6700 -1342 207 204 0 0 chr4 29885260 29885309 -172443038 + (TA)n Simple_repeat Simple_repeat 2 50 0 2268 115 12 9 chr4 29885588 29885918 -172442429 - THE1B LTR MaLR 0 364 34 360 0 0 0 chr4 29886784 29886824 -172441523 + (TA)n Simple_repeat Simple_repeat 1 40 0 240 35 0 0 chr4 29886823 29886852 -172441495 + (CA)n Simple_repeat Simple_repeat 2 30 0 * 29 70 0 0 chr4 29887142 29887199 -172441148 + AT_rich Low_complexity Low_complexity 1 57 0 311 330 18 18 chr4 29887724 29887836 -172440511 + L1ME3A LINE L1 5808 5919 -251 515 264 108 67 chr4 29888163 29888640 -172439707 + HAL1 LINE L1 764 1289 -1218 198 0 0 0 chr4 29888640 29888662 -172439685 + (GA)n Simple_repeat Simple_repeat 2 23 0 515 264 108 67 chr4 29888662 29888990 -172439357 + HAL1 LINE L1 1289 1602 -905 423 308 96 25 chr4 29889352 29889550 -172438797 + LTR16A LTR ERVL 234 445 -5 704 278 172 40 chr4 29889558 29889954 -172438393 + HERV16 LTR ERVL 4 451 -4545 436 253 110 28 chr4 29890035 29890217 -172438130 + HERV16 LTR ERVL 560 756 -4240 252 0 0 0 chr4 29890409 29890437 -172437910 + (T)n Simple_repeat Simple_repeat 1 28 0 252 227 0 148 chr4 29890809 29890897 -172437450 + HERV16 LTR ERVL 1310 1384 -3612 21 57 0 0 chr4 29890918 29890953 -172437394 + AT_rich Low_complexity Low_complexity 1 35 0 407 331 15 0 chr4 29891142 29891275 -172437072 + HERV16 LTR ERVL 1741 1875 -3121 711 319 45 59 chr4 29891279 29891567 -172436780 + MER45C DNA AcHobo 1 284 -669 552 188 140 25 chr4 29891618 29891808 -172436539 + MER45C DNA AcHobo 735 946 -7 1192 312 22 20 chr4 29891819 29892277 -172436070 + HERV16 LTR ERVL 1880 2338 -2658 535 228 16 8 chr4 29892366 29892493 -172435854 - MER65B LTR ERV1 -403 128 1 1702 177 0 14 chr4 29893001 29893295 -172435052 - AluJo SINE Alu -20 292 3 344 293 94 38 chr4 29893300 29893512 -172434835 + HAL1 LINE L1 2169 2392 -115 1296 188 102 64 chr4 29893711 29893858 -172434489 - THE1C LTR MaLR 0 375 235 2239 121 22 25 chr4 29893858 29894223 -172434124 - THE1B LTR MaLR 0 364 1 1296 188 102 64 chr4 29894223 29894436 -172433911 - THE1C LTR MaLR -140 235 1 192 380 98 16 chr4 29894656 29894911 -172433436 + L2 LINE L2 2804 3079 -193 235 279 25 0 chr4 29895047 29895126 -172433221 + (TA)n Simple_repeat Simple_repeat 2 82 0 3391 165 75 5 chr4 29895475 29896459 -172431888 - L1MA9 LINE L1 -182 6130 5039 25 0 0 0 chr4 29897168 29897193 -172431154 + AT_rich Low_complexity Low_complexity 1 25 0 212 179 0 0 chr4 29897429 29897468 -172430879 - MIR SINE MIR -13 249 211 190 340 65 45 chr4 29897882 29898082 -172430265 + MIR SINE MIR 53 256 -6 23 33 0 0 chr4 29898714 29898744 -172429603 + AT_rich Low_complexity Low_complexity 1 30 0 225 284 0 0 chr4 29898961 29899035 -172429312 + (TA)n Simple_repeat Simple_repeat 1 74 0 255 157 0 0 chr4 29899200 29899251 -172429096 + (TATG)n Simple_repeat Simple_repeat 2 52 0 1436 257 83 30 chr4 29899260 29900129 -172428218 - L1ME1 LINE L1 -287 6674 5758 545 253 68 0 chr4 29900132 29900353 -172427994 - L1ME1 LINE L1 -1754 5187 4952 2825 283 47 32 chr4 29900361 29902005 -172426342 - L1ME1 LINE L1 -2154 4787 3120 521 258 76 46 chr4 29902007 29902421 -172425926 + L1MEc LINE L1 2030 2405 -3810 864 264 84 12 chr4 29902438 29902772 -172425575 - L1ME1 LINE L1 -4889 1534 1177 286 351 22 44 chr4 29902850 29903078 -172425269 - L1ME1 LINE L1 -5394 1029 807 957 275 46 17 chr4 29903290 29903639 -172424708 - L1ME1 LINE L1 -5955 468 110 836 341 93 12 chr4 29905631 29906252 -172422095 - L2 LINE L2 0 3313 2548 226 267 41 14 chr4 29906307 29906453 -172421894 + (TTATA)n Simple_repeat Simple_repeat 5 154 0 199 309 170 0 chr4 29906453 29906547 -172421800 + L2 LINE L2 2544 2653 -661 1578 124 57 25 chr4 29906547 29906829 -172421518 + THE1C LTR MaLR 85 375 0 186 364 58 13 chr4 29906986 29907140 -172421207 - MIR SINE MIR -48 214 54 1321 215 48 16 chr4 29907402 29907739 -172420608 + L1MA10 LINE L1 5996 6331 -3 412 259 37 0 chr4 29907739 29907847 -172420500 + L1MB5 LINE L1 6040 6151 -23 2004 194 39 15 chr4 29907850 29908262 -172420085 + MSTB LTR MaLR 1 422 -4 2754 10 0 10 chr4 29909105 29909417 -172418930 - AluYa5 SINE Alu -2 309 1 652 233 12 64 chr4 29909949 29910121 -172418226 + Charlie1a DNA MER1_type 1 163 -1292 412 265 117 25 chr4 29910131 29910327 -172418020 + Charlie1a DNA MER1_type 484 697 -758 1723 250 79 23 chr4 29910328 29910885 -172417462 - MLT1E3 LTR MaLR 0 624 50 462 307 20 13 chr4 29911579 29911729 -172416618 - MIR SINE MIR -103 159 9 213 65 0 0 chr4 29912227 29912258 -172416089 + (TC)n Simple_repeat Simple_repeat 2 32 0 465 319 28 7 chr4 29912301 29912442 -172415905 - MIR3 SINE MIR -42 166 23 476 282 121 36 chr4 29914250 29914498 -172413849 - L3 LINE CR1 -4 1573 1305 23 0 0 0 chr4 29914634 29914657 -172413690 + AT_rich Low_complexity Low_complexity 1 23 0 218 341 68 0 chr4 29915330 29915418 -172412929 - L3 LINE CR1 -439 1138 1045 203 381 65 7 chr4 29915645 29915784 -172412563 - L2 LINE L2 0 3313 3167 2105 172 34 49 chr4 29915960 29916432 -172411915 - L1MC3 LINE L1 -184 7601 7137 581 278 42 69 chr4 29916442 29916748 -172411599 - L1MCb LINE L1 -5710 335 38 1917 193 21 23 chr4 29916762 29917146 -172411201 - MLT1B LTR MaLR -7 383 1 1606 224 37 3 chr4 29917446 29917799 -172410548 - MLT1A1 LTR MaLR 0 365 1 456 234 48 8 chr4 29917849 29917973 -172410374 - MER76 LTR ERV -9 679 551 246 331 92 71 chr4 29918023 29918207 -172410140 - MER5A DNA MER1_type 0 189 2 265 284 128 28 chr4 29918298 29918439 -172409908 + MIR3 SINE MIR 50 204 -4 247 337 22 22 chr4 29919000 29919089 -172409258 + MIR SINE MIR 68 156 -106 1533 266 47 32 chr4 29919766 29920295 -172408052 + MLT1E2 LTR MaLR 115 626 0 370 293 78 12 chr4 29920575 29920742 -172407605 + MIR SINE MIR 70 247 -15 212 332 49 86 chr4 29920930 29921174 -172407173 - L2 LINE L2 -167 3105 2871 2217 120 3 6 chr4 29922380 29922714 -172405633 + L1PB3 LINE L1 5660 5992 -162 2252 90 0 0 chr4 29922799 29923099 -172405248 - AluSc SINE Alu -9 300 1 230 244 82 91 chr4 29923623 29923963 -172404384 - L1ME LINE L1 -3996 2829 2493 401 257 174 61 chr4 29924153 29924464 -172403883 - L1ME LINE L1 -4576 2249 1904 25 51 0 0 chr4 29924464 29924503 -172403844 + AT_rich Low_complexity Low_complexity 1 39 0 2295 180 13 16 chr4 29924529 29924979 -172403368 - L1MC1 LINE L1 -256 6077 5629 303 321 24 13 chr4 29925225 29925458 -172402889 - L1ME LINE L1 -5051 1565 1296 360 330 38 27 chr4 29925804 29925989 -172402358 - MIR3 SINE MIR 0 208 22 306 242 30 30 chr4 29926054 29926153 -172402194 - LTR67 LTR ERVL -31 526 428 2479 56 0 0 chr4 29926553 29926858 -172401489 + AluY SINE Alu 1 305 -6 191 252 68 87 chr4 29926874 29926977 -172401370 + MIR SINE MIR 107 207 -55 212 179 0 0 chr4 29927678 29927717 -172400630 + T-rich Low_complexity Low_complexity 1 39 0 1922 41 0 8 chr4 29927721 29927965 -172400382 + L1PA4 LINE L1 5911 6152 -3 2188 104 3 0 chr4 29928138 29928427 -172399920 + AluSx SINE Alu 1 290 -22 213 65 0 0 chr4 29928430 29928461 -172399886 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 2291 117 0 0 chr4 29929189 29929498 -172398849 + AluSg SINE Alu 1 309 -1 392 82 16 0 chr4 29930206 29930267 -172398080 + (TA)n Simple_repeat Simple_repeat 2 63 0 24 0 0 0 chr4 29931086 29931110 -172397237 + AT_rich Low_complexity Low_complexity 1 24 0 264 309 81 37 chr4 29931283 29931419 -172396928 + MIR SINE MIR 60 201 -61 183 42 0 0 chr4 29931692 29931716 -172396631 + (GA)n Simple_repeat Simple_repeat 2 25 0 13548 154 16 37 chr4 29931937 29933370 -172394977 + Tigger1 DNA MER2_type 11 1370 -1048 690 146 0 0 chr4 29933370 29933480 -172394867 + L1MB8 LINE L1 6061 6170 -8 13548 154 16 37 chr4 29933480 29934507 -172393840 + Tigger1 DNA MER2_type 1370 2418 0 232 318 0 0 chr4 29934584 29934650 -172393697 - MIR SINE MIR -153 109 44 23 0 0 0 chr4 29934898 29934921 -172393426 + AT_rich Low_complexity Low_complexity 1 23 0 217 371 8 24 chr4 29935379 29935503 -172392844 - L2 LINE L2 -1007 2307 2186 2339 113 11 11 chr4 29935581 29935944 -172392403 + THE1B LTR MaLR 2 364 0 247 351 26 33 chr4 29936024 29936175 -172392172 + MER5A DNA MER1_type 10 159 -30 23 0 0 0 chr4 29936612 29936635 -172391712 + AT_rich Low_complexity Low_complexity 1 23 0 227 268 28 0 chr4 29936650 29936721 -172391626 + MER103 DNA DNA 94 166 0 333 325 51 6 chr4 29936884 29937041 -172391306 + MIR SINE MIR 97 260 -2 722 221 0 0 chr4 29937143 29937274 -172391073 - FLAM_A SINE Alu -2 131 1 1036 173 66 29 chr4 29937289 29937561 -172390786 - L1MA8 LINE L1 0 6291 6010 1005 338 79 41 chr4 29938091 29938943 -172389404 - L2 LINE L2 -673 2641 1758 347 160 0 85 chr4 29938950 29939044 -172389303 - MER53 DNA DNA -1 188 103 386 324 66 39 chr4 29939092 29939217 -172389130 - L2 LINE L2 -1593 1721 1601 2474 67 0 3 chr4 29939217 29939529 -172388818 - AluY SINE Alu 0 311 1 386 324 66 39 chr4 29939529 29939736 -172388611 - L2 LINE L2 -1713 1601 1380 1842 170 0 0 chr4 29940039 29940333 -172388014 + AluJb SINE Alu 3 296 -16 182 174 22 0 chr4 29940511 29940557 -172387790 + (TA)n Simple_repeat Simple_repeat 2 48 0 312 27 0 0 chr4 29940613 29940650 -172387697 + (TG)n Simple_repeat Simple_repeat 1 37 0 293 339 115 10 chr4 29940847 29941039 -172387308 + MIR SINE MIR 34 245 -17 180 310 69 0 chr4 29941066 29941124 -172387223 - MIR SINE MIR -21 241 180 250 316 110 13 chr4 29941236 29941391 -172386956 - MIR SINE MIR -86 176 7 1978 141 7 0 chr4 29941564 29941869 -172386478 - AluSx SINE Alu -5 307 1 22 0 0 0 chr4 29944749 29944771 -172383576 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr4 29945685 29945705 -172382642 + (TC)n Simple_repeat Simple_repeat 1 20 0 242 390 8 8 chr4 29945911 29946029 -172382318 - L2 LINE L2 0 3272 3155 606 282 62 37 chr4 29946247 29946722 -172381625 - MLT1G LTR MaLR -2 588 34 323 291 162 12 chr4 29946982 29947223 -172381124 - MLT1J2 LTR MaLR -105 345 69 2328 90 3 0 chr4 29947421 29947721 -172380626 + AluY SINE Alu 1 301 -10 375 141 94 0 chr4 29948023 29948087 -172380260 - L1PB4 LINE L1 -283 5873 5804 189 0 0 0 chr4 29948092 29948113 -172380234 + (TG)n Simple_repeat Simple_repeat 2 22 0 203 294 15 0 chr4 29948142 29948210 -172380137 + (TA)n Simple_repeat Simple_repeat 1 69 0 365 57 0 19 chr4 29948216 29948269 -172380078 + (TG)n Simple_repeat Simple_repeat 2 53 0 335 23 23 0 chr4 29948268 29948312 -172380035 + (TA)n Simple_repeat Simple_repeat 1 45 0 * 2637 134 4 20 chr4 29948331 29948786 -172379561 - L1PB4 LINE L1 -384 5772 5325 548 317 86 52 chr4 29949232 29949617 -172378730 + L3 LINE CR1 1158 1555 -22 283 282 57 32 chr4 29949619 29949743 -172378604 - MIR3 SINE MIR -1 207 81 282 143 0 0 chr4 29950200 29950249 -172378098 - L2 LINE L2 0 3313 3265 287 300 22 94 chr4 29950565 29950635 -172377712 - MIR SINE MIR -1 261 188 2234 102 3 10 chr4 29950635 29950938 -172377409 - AluSx SINE Alu -11 301 1 287 300 22 94 chr4 29950938 29951047 -172377300 - MIR SINE MIR -74 188 95 617 286 95 66 chr4 29951425 29951908 -172376439 + MLT1J LTR MaLR 3 499 -12 21 0 0 0 chr4 29952638 29952659 -172375688 + AT_rich Low_complexity Low_complexity 1 21 0 2304 132 43 3 chr4 29953155 29953527 -172374820 + L1PA15 LINE L1 5779 6165 0 1154 260 56 6 chr4 29953861 29954219 -172374128 + L1ME3A LINE L1 5523 5898 -272 24 0 0 0 chr4 29957601 29957625 -172370722 + AT_rich Low_complexity Low_complexity 1 24 0 2047 105 4 4 chr4 29957813 29958116 -172370231 + AluSc SINE Alu 3 305 0 3952 215 80 22 chr4 29958146 29959000 -172369347 - L1MC3 LINE L1 -8 7777 6814 432 0 0 0 chr4 29959000 29959048 -172369299 + (TG)n Simple_repeat Simple_repeat 2 49 0 3952 215 80 22 chr4 29959048 29959728 -172368619 - L1MC3 LINE L1 -971 6814 6174 1733 135 7 66 chr4 29959816 29960145 -172368202 - AluSq SINE Alu 0 311 1 21 36 0 0 chr4 29960721 29960749 -172367598 + AT_rich Low_complexity Low_complexity 1 28 0 446 336 48 22 chr4 29961902 29962131 -172366216 - MIR SINE MIR 0 262 28 476 273 68 19 chr4 29962179 29962384 -172365963 - LTR67 LTR ERVL -17 540 326 2308 106 0 0 chr4 29963406 29963707 -172364640 - AluSg SINE Alu -9 301 1 3033 316 102 26 chr4 29963862 29965413 -172362934 - L2 LINE L2 -661 2653 986 275 323 37 19 chr4 29966513 29966565 -172361782 + L1MCc LINE L1 39 89 -6334 2287 93 0 7 chr4 29966565 29966865 -172361482 + AluSc SINE Alu 1 298 -11 275 323 37 19 chr4 29966865 29966973 -172361374 + L1MCc LINE L1 89 202 -6221 30 0 0 0 chr4 29967570 29967600 -172360747 + AT_rich Low_complexity Low_complexity 1 30 0 246 196 62 82 chr4 29967619 29967716 -172360631 + L1MCc LINE L1 2429 2523 -4599 556 273 129 43 chr4 29967752 29968008 -172360339 - MLT1E3 LTR MaLR 0 624 347 963 155 0 12 chr4 29968011 29968179 -172360168 + MER61-int LTR ERV1 2615 2780 -2437 192 40 0 0 chr4 29968180 29968205 -172360142 + (CAA)n Simple_repeat Simple_repeat 3 27 0 2034 188 18 5 chr4 29968205 29968589 -172359758 + MER61-int LTR ERV1 2817 3205 -2012 3663 101 38 30 chr4 29968615 29969056 -172359291 + LTR19B LTR ERV1 1 451 -129 2178 65 0 7 chr4 29969056 29969369 -172358978 + AluY SINE Alu 7 317 0 3663 101 38 30 chr4 29969369 29969501 -172358846 + LTR19B LTR ERV1 451 580 0 1107 263 141 30 chr4 29969506 29969875 -172358472 - MLT1E1 LTR MaLR -244 410 1 2722 291 62 24 chr4 29969876 29970166 -172358181 + L1MCc LINE L1 2553 2831 -4110 2413 90 0 6 chr4 29970166 29970478 -172357869 + AluSg SINE Alu 1 310 0 2722 291 62 24 chr4 29970478 29972362 -172355985 + L1MCc LINE L1 2831 4930 -2011 1075 282 113 3 chr4 29972362 29972717 -172355630 - LTR53 LTR ERVL 0 519 126 2526 163 14 0 chr4 29972717 29973185 -172355162 + MER1A DNA MER1_type 1 524 -5 372 163 138 12 chr4 29973187 29973262 -172355085 - LTR53 LTR ERVL -384 135 51 1492 230 38 31 chr4 29973262 29973654 -172354693 + MLT1C LTR MaLR 1 395 -72 1322 278 11 8 chr4 29973654 29974025 -172354322 + L1MD3 LINE L1 7452 7823 -172 24 0 0 0 chr4 29974247 29974271 -172354076 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr4 29974382 29974403 -172353944 + AT_rich Low_complexity Low_complexity 1 21 0 1224 215 64 13 chr4 29975104 29975416 -172352931 - MER2 DNA MER2_type -9 336 9 1130 254 111 19 chr4 29975783 29976142 -172352205 + MLT1H LTR MaLR 14 405 -144 258 32 0 0 chr4 29976143 29976174 -172352173 + (CAGCC)n Simple_repeat Simple_repeat 3 33 0 279 0 0 0 chr4 29976871 29976902 -172351445 + (A)n Simple_repeat Simple_repeat 1 31 0 433 353 12 0 chr4 29977289 29977459 -172350888 + MIR SINE MIR 81 252 -10 674 286 48 0 chr4 29977624 29977851 -172350496 - LTR16A1 LTR ERVL -7 450 213 363 44 0 0 chr4 29977886 29977931 -172350416 + (CA)n Simple_repeat Simple_repeat 2 46 0 1822 143 93 15 chr4 29979541 29979884 -172348463 - THE1C LTR MaLR 0 375 6 24 0 0 0 chr4 29980376 29980400 -172347947 + AT_rich Low_complexity Low_complexity 1 24 0 731 208 0 8 chr4 29980734 29980864 -172347483 - FLAM_A SINE Alu -4 129 1 545 285 111 49 chr4 29980864 29981366 -172346981 - L1M4 LINE L1 -1486 4660 4124 272 250 25 0 chr4 29981497 29981577 -172346770 - L1M4 LINE L1 -3382 2764 2683 23 0 0 0 chr4 29982172 29982195 -172346152 + AT_rich Low_complexity Low_complexity 1 23 0 652 217 0 0 chr4 29982435 29982555 -172345792 + FLAM_C SINE Alu 1 120 -13 579 29 0 0 chr4 29982555 29982624 -172345723 + (TA)n Simple_repeat Simple_repeat 1 69 0 2196 110 3 0 chr4 29982626 29982918 -172345429 + AluSp SINE Alu 1 293 -20 360 59 0 0 chr4 29982920 29982971 -172345376 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 305 286 130 23 chr4 29983498 29983844 -172344503 - L1M4 LINE L1 -3382 2764 2382 231 163 82 0 chr4 29984007 29984056 -172344291 - L1MC2 LINE L1 -11 6333 6281 * 792 211 31 12 chr4 29984044 29984260 -172344087 - L1MC3 LINE L1 -136 7859 7432 1621 223 17 9 chr4 29984260 29984610 -172343737 - MLT1C LTR MaLR -3 464 112 1225 245 32 42 chr4 29984634 29985066 -172343281 - L1MA10 LINE L1 -28 6306 5879 * 1285 252 28 17 chr4 29985059 29985528 -172342819 - L1M4 LINE L1 -767 5379 4906 5305 185 25 4 chr4 29985542 29987264 -172341083 - L1PA16 LINE L1 -9 6157 4408 297 333 0 0 chr4 29987321 29987420 -172340927 - L1PA12 LINE L1 -5399 2182 2084 1036 355 28 39 chr4 29987506 29988145 -172340202 - L1PA12 LINE L1 -6155 1419 788 2138 259 16 0 chr4 29988153 29988786 -172339561 - L1M4 LINE L1 -1230 4916 4274 229 288 62 10 chr4 29989475 29989579 -172338768 - MIR SINE MIR -75 133 21 664 310 10 0 chr4 29990839 29991036 -172337311 + MIR SINE MIR 7 205 -57 250 316 68 60 chr4 29991894 29992027 -172336320 - MIR SINE MIR -70 192 59 27 0 0 0 chr4 29993411 29993438 -172334909 + AT_rich Low_complexity Low_complexity 1 27 0 314 256 79 37 chr4 29993581 29993745 -172334602 + L1MC/D LINE L1 5308 5478 -881 622 268 57 0 chr4 29993934 29994091 -172334256 - FRAM SINE Alu 0 166 1 264 252 16 39 chr4 29994408 29994535 -172333812 + T-rich Low_complexity Low_complexity 2 125 0 192 254 9 18 chr4 29994537 29994647 -172333700 + CT-rich Low_complexity Low_complexity 2 110 0 536 246 6 23 chr4 29995024 29995199 -172333148 + L1MC4a LINE L1 6446 6617 -1191 257 197 15 0 chr4 29996894 29996960 -172331387 + (TCTA)n Simple_repeat Simple_repeat 3 69 0 383 82 0 0 chr4 29997530 29997579 -172330768 + L1MA4 LINE L1 6176 6224 -76 378 0 0 0 chr4 29997747 29997789 -172330558 + (CA)n Simple_repeat Simple_repeat 1 42 0 231 61 0 0 chr4 29997789 29997822 -172330525 + (GA)n Simple_repeat Simple_repeat 1 33 0 1929 137 27 48 chr4 29999661 30000033 -172328314 - THE1B LTR MaLR 0 364 1 21 57 0 0 chr4 30000039 30000074 -172328273 + AT_rich Low_complexity Low_complexity 1 35 0 2218 182 36 25 chr4 30000109 30000555 -172327792 - MER70A LTR ERVL 0 472 22 7199 133 27 55 chr4 30001225 30002543 -172325804 - Tigger1 DNA MER2_type 0 2418 1137 1517 181 203 0 chr4 30002543 30002897 -172325450 - MSTA LTR MaLR -2 426 1 4265 149 14 1 chr4 30002897 30003614 -172324733 - Tigger1 DNA MER2_type -1277 1141 416 463 198 0 12 chr4 30003606 30003692 -172324655 - Tigger1 DNA MER2_type -2330 88 4 * 229 146 0 42 chr4 30003852 30003900 -172324447 - MLT1E3 LTR MaLR -16 608 563 2339 83 3 25 chr4 30003901 30004215 -172324132 - AluY SINE Alu -4 307 1 2076 179 87 0 chr4 30004609 30005001 -172323346 + MSTB LTR MaLR 1 426 0 233 291 106 45 chr4 30005979 30006158 -172322189 + MIR SINE MIR 63 252 -10 366 23 0 0 chr4 30006162 30006205 -172322142 + (CAT)n Simple_repeat Simple_repeat 1 43 0 200 386 30 0 chr4 30006351 30006452 -172321895 + MIR3 SINE MIR 67 170 -38 323 401 77 18 chr4 30006514 30006957 -172321390 + L2 LINE L2 2584 3050 -222 261 211 92 13 chr4 30008281 30008357 -172319990 - MIR SINE MIR -95 167 86 23 33 0 0 chr4 30009584 30009614 -172318733 + AT_rich Low_complexity Low_complexity 1 30 0 221 326 11 79 chr4 30009757 30009935 -172318412 + L2 LINE L2 2809 2974 -298 415 359 41 9 chr4 30010130 30010350 -172317997 - MIR SINE MIR -1 261 35 286 305 19 19 chr4 30010394 30010499 -172317848 + MLT1J2 LTR MaLR 67 171 -279 209 269 74 37 chr4 30011279 30011387 -172316960 - MIR SINE MIR -108 154 43 25 0 0 0 chr4 30011634 30011659 -172316688 + AT_rich Low_complexity Low_complexity 1 25 0 345 323 65 19 chr4 30011787 30011942 -172316405 - MIR SINE MIR -56 206 45 225 270 16 0 chr4 30012294 30012357 -172315990 + MLT1H LTR MaLR 479 542 -7 219 260 0 0 chr4 30012363 30012413 -172315934 + (CA)n Simple_repeat Simple_repeat 2 51 0 302 291 109 86 chr4 30012573 30012958 -172315389 - MLT1K LTR MaLR -8 580 187 894 120 7 27 chr4 30013501 30013651 -172314696 + L1PA10 LINE L1 6022 6168 0 22 0 0 0 chr4 30013685 30013707 -172314640 + AT_rich Low_complexity Low_complexity 1 22 0 287 283 299 6 chr4 30013792 30013969 -172314378 - MIR SINE MIR 0 262 34 29 0 0 0 chr4 30014387 30014416 -172313931 + AT_rich Low_complexity Low_complexity 1 29 0 291 336 25 16 chr4 30015973 30016095 -172312252 - MIR SINE MIR -108 154 32 2119 108 3 22 chr4 30016120 30016436 -172311911 - AluSg SINE Alu 0 310 1 191 193 35 0 chr4 30016821 30016878 -172311469 + CT-rich Low_complexity Low_complexity 2 60 0 273 371 12 60 chr4 30017573 30017608 -172310739 - MER5A DNA MER1_type -27 162 127 1831 110 30 0 chr4 30017608 30017871 -172310476 + AluSq SINE Alu 32 302 -11 273 371 12 60 chr4 30017871 30018002 -172310345 - MER5A DNA MER1_type -62 127 4 184 333 69 20 chr4 30019526 30019628 -172308719 - MIR3 SINE MIR -45 163 57 333 224 0 51 chr4 30019827 30019925 -172308422 + L1MA2 LINE L1 6179 6271 -33 6420 141 40 1 chr4 30020452 30022217 -172306130 - L1MA2 LINE L1 -7 6297 4458 3383 196 120 10 chr4 30023407 30024344 -172304003 - L1MA2 LINE L1 -1670 4476 3349 6310 53 1 8 chr4 30025740 30026535 -172301812 - L1PA6 LINE L1 -3 6151 5362 182 266 138 32 chr4 30026563 30026657 -172301690 - L3b LINE CR1 -125 1458 1355 735 68 9 0 chr4 30026764 30026885 -172301462 - L1 LINE L1 -788 5358 5237 4179 136 23 1 chr4 30026885 30027568 -172300779 + L1MA1 LINE L1 5605 6302 0 22 80 0 0 chr4 30027945 30027995 -172300352 + AT_rich Low_complexity Low_complexity 1 50 0 347 201 73 104 chr4 30028314 30028478 -172299869 + MIR SINE MIR 49 207 -55 264 329 57 19 chr4 30028515 30028673 -172299674 + MIR SINE MIR 99 262 0 207 0 0 0 chr4 30028916 30028939 -172299408 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 279 319 6 70 chr4 30029514 30029671 -172298676 + MIR3 SINE MIR 59 205 -3 180 0 0 0 chr4 30029906 30029926 -172298421 + (TGAA)n Simple_repeat Simple_repeat 1 20 0 319 356 57 28 chr4 30030534 30030711 -172297636 - MIR3 SINE MIR -11 197 16 2292 87 0 7 chr4 30030744 30031044 -172297303 + AluY SINE Alu 1 298 -13 212 175 0 0 chr4 30031483 30031523 -172296824 + A-rich Low_complexity Low_complexity 1 40 0 180 321 126 44 chr4 30031610 30031769 -172296578 + L2 LINE L2 2872 3043 -229 422 222 229 13 chr4 30032908 30033061 -172295286 - MIR SINE MIR -5 257 72 22 56 0 0 chr4 30033061 30033097 -172295250 + AT_rich Low_complexity Low_complexity 1 36 0 212 304 54 11 chr4 30033165 30033257 -172295090 - MIR SINE MIR -69 193 98 591 158 0 0 chr4 30033380 30033475 -172294872 - L1PA12 LINE L1 -7485 96 2 2076 110 7 3 chr4 30033478 30033788 -172294559 + L1PA12 LINE L1 5734 6044 -124 1428 81 38 9 chr4 30033788 30033991 -172294356 + L1PA12 LINE L1 5951 6167 -1 204 135 0 27 chr4 30034714 30034751 -172293596 + (GAAA)n Simple_repeat Simple_repeat 4 39 0 23 78 0 0 chr4 30034801 30034852 -172293495 + AT_rich Low_complexity Low_complexity 1 51 0 194 314 0 0 chr4 30034968 30035019 -172293328 - L2 LINE L2 0 3313 3263 264 30 0 0 chr4 30036065 30036098 -172292249 + (TG)n Simple_repeat Simple_repeat 2 34 0 610 318 75 46 chr4 30036639 30037051 -172291296 - L2 LINE L2 -589 2725 2302 372 304 174 13 chr4 30037172 30037402 -172290945 + MLT1J1 LTR MaLR 6 272 -174 276 264 128 94 chr4 30037490 30037755 -172290592 + MLT1I LTR MaLR 128 401 -8 227 323 20 10 chr4 30038064 30038163 -172290184 + MIR SINE MIR 163 262 0 2400 87 0 0 chr4 30039088 30039398 -172288949 + AluSx SINE Alu 1 310 -2 330 85 0 0 chr4 30040062 30040109 -172288238 - MADE1 DNA Mariner 0 80 34 1001 286 111 10 chr4 30040130 30040634 -172287713 + L1ME4a LINE L1 5556 6110 -11 262 253 101 0 chr4 30040752 30040831 -172287516 - L1MC4 LINE L1 -1339 6703 6617 1869 121 3 37 chr4 30040837 30041160 -172287187 - AluSx SINE Alu 0 312 1 4316 172 47 2 chr4 30041169 30041982 -172286365 - L1MB1 LINE L1 0 6168 5320 186 313 179 0 chr4 30044181 30044293 -172284054 - MIR SINE MIR -14 248 117 310 307 129 7 chr4 30045143 30045283 -172283064 - MIR SINE MIR -27 235 79 28 29 0 0 chr4 30045753 30045788 -172282559 + AT_rich Low_complexity Low_complexity 1 35 0 506 275 128 22 chr4 30046091 30046351 -172281996 + MLT1J2 LTR MaLR 42 331 -119 322 134 63 0 chr4 30046560 30046687 -172281660 + (TA)n Simple_repeat Simple_repeat 1 135 0 33 66 0 0 chr4 30046881 30046942 -172281405 + AT_rich Low_complexity Low_complexity 1 61 0 231 270 138 13 chr4 30046958 30047110 -172281237 + L1ME4a LINE L1 5947 6117 -4 22 56 0 0 chr4 30048131 30048167 -172280180 + AT_rich Low_complexity Low_complexity 1 36 0 180 0 0 0 chr4 30048169 30048189 -172280158 + (TA)n Simple_repeat Simple_repeat 2 21 0 2174 109 0 16 chr4 30048529 30048841 -172279506 - AluSx SINE Alu -5 307 1 260 368 69 45 chr4 30049519 30049894 -172278453 - L2 LINE L2 0 3313 2930 664 176 7 0 chr4 30050339 30050475 -172277872 + L1MA4A LINE L1 5937 6073 -230 22 80 0 0 chr4 30050484 30050534 -172277813 + AT_rich Low_complexity Low_complexity 1 50 0 21 36 0 0 chr4 30051283 30051311 -172277036 + AT_rich Low_complexity Low_complexity 1 28 0 294 328 90 0 chr4 30052068 30052202 -172276145 - MIR SINE MIR 0 262 117 480 77 0 0 chr4 30052851 30052916 -172275431 - L1PA6 LINE L1 0 6154 6090 761 255 46 0 chr4 30054241 30054498 -172273849 + L1MC3 LINE L1 6636 6862 -923 340 190 63 0 chr4 30054528 30054607 -172273740 + L1MC3 LINE L1 7176 7259 -526 2380 65 3 7 chr4 30054636 30054946 -172273401 + AluY SINE Alu 1 309 -2 396 307 88 45 chr4 30055110 30055243 -172273104 - L1MEc LINE L1 -3751 2464 2338 538 51 26 0 chr4 30055243 30055321 -172273026 + (TCTA)n Simple_repeat Simple_repeat 1 80 0 396 307 88 45 chr4 30055321 30055521 -172272826 - L1MEc LINE L1 -3877 2338 2152 1960 147 10 0 chr4 30055599 30055899 -172272448 + AluSx SINE Alu 1 303 -9 390 264 151 0 chr4 30055945 30056104 -172272243 - MER3 DNA MER1_type -4 205 23 1498 247 53 3 chr4 30056112 30056488 -172271859 - MSTD LTR MaLR 0 396 2 14795 149 31 36 chr4 30056497 30059241 -172269106 - Tigger4(Zombi) DNA MER2_type 0 2731 1 241 245 38 19 chr4 30059777 30059883 -172268464 + L1ME LINE L1 5710 5817 -347 22 0 0 0 chr4 30060005 30060027 -172268320 + AT_rich Low_complexity Low_complexity 1 22 0 24 67 0 0 chr4 30060170 30060215 -172268132 + AT_rich Low_complexity Low_complexity 1 45 0 25 65 0 0 chr4 30060526 30060572 -172267775 + AT_rich Low_complexity Low_complexity 1 46 0 676 285 60 74 chr4 30060831 30061400 -172266947 - L1MC4a LINE L1 -1910 5898 5338 24 32 0 0 chr4 30061452 30061483 -172266864 + AT_rich Low_complexity Low_complexity 1 31 0 6003 105 24 0 chr4 30062099 30062986 -172265361 - L1PA14 LINE L1 0 6161 5254 465 304 60 36 chr4 30063409 30063744 -172264603 + MLT1J1 LTR MaLR 102 444 -2 2220 95 0 3 chr4 30064595 30064910 -172263437 - L1PA7 LINE L1 -1 6153 5840 2692 188 90 15 chr4 30065294 30065907 -172262440 - L1MB8 LINE L1 -16 6162 5504 293 254 32 0 chr4 30065912 30065975 -172262372 - L2 LINE L2 -22 3291 3227 735 179 15 0 chr4 30066227 30066361 -172261986 - AluJo SINE Alu -175 137 2 413 230 11 118 chr4 30066991 30067169 -172261178 - MER5B DNA MER1_type -19 159 1 23 0 0 0 chr4 30067256 30067279 -172261068 + AT_rich Low_complexity Low_complexity 1 23 0 21 71 0 0 chr4 30067652 30067694 -172260653 + AT_rich Low_complexity Low_complexity 1 42 0 25 0 0 0 chr4 30068494 30068519 -172259828 + AT_rich Low_complexity Low_complexity 1 25 0 25 75 0 0 chr4 30068708 30068761 -172259586 + AT_rich Low_complexity Low_complexity 1 53 0 983 129 0 0 chr4 30069582 30069722 -172258625 + AluSg/x SINE Alu 158 297 -15 638 307 47 30 chr4 30070790 30071090 -172257257 + MER102a DNA MER1_type 26 330 0 565 271 64 44 chr4 30072601 30072804 -172255543 - MER63A DNA MER1_type -3 207 1 656 349 120 8 chr4 30073080 30073473 -172254874 + L2 LINE L2 817 1253 -2061 2478 253 66 38 chr4 30073473 30075145 -172253202 + L1MB5 LINE L1 929 2747 -3635 1664 167 13 35 chr4 30075585 30075903 -172252444 + AluSx SINE Alu 1 311 -1 690 296 54 0 chr4 30076042 30076302 -172252045 + L1MB5 LINE L1 3904 4177 -2205 * 9822 197 24 6 chr4 30076300 30077860 -172250487 - L1 LINE L1 -1291 6274 4664 1940 162 0 22 chr4 30077860 30078175 -172250172 - AluSx SINE Alu -2 310 3 9822 197 24 6 chr4 30078175 30078794 -172249553 - L1 LINE L1 -2901 4664 4057 928 142 7 0 chr4 30078794 30078935 -172249412 + FRAM SINE Alu 20 161 -15 3677 224 41 77 chr4 30078945 30080798 -172247549 - L1 LINE L1 -3501 4064 2265 3485 226 47 18 chr4 30080931 30082379 -172245968 + L1MB5 LINE L1 4912 6403 -7 343 282 17 35 chr4 30082809 30082983 -172245364 + MER31-int LTR ERV1 1117 1287 -3649 297 232 71 52 chr4 30083023 30083178 -172245169 + MER31-int LTR ERV1 1289 1446 -3490 435 231 35 46 chr4 30083332 30083505 -172244842 + MER31-int LTR ERV1 1698 1868 -3068 238 276 0 0 chr4 30083513 30083589 -172244758 - L1MC4 LINE L1 -1326 6716 6641 921 253 147 60 chr4 30083622 30084628 -172243719 + MER31-int LTR ERV1 1921 3059 -1877 185 301 14 82 chr4 30084802 30084875 -172243472 + MER5A DNA MER1_type 34 101 -88 2353 100 0 0 chr4 30086225 30086526 -172241821 + AluSg SINE Alu 1 301 -9 1227 163 94 75 chr4 30086526 30086900 -172241447 + LTR23 LTR ERV1 55 435 -2 25 95 0 0 chr4 30087293 30087367 -172240980 + AT_rich Low_complexity Low_complexity 1 74 0 2045 113 0 7 chr4 30088079 30088361 -172239986 - AluSg SINE Alu -30 280 1 3860 167 18 20 chr4 30088550 30089262 -172239085 - MER50 LTR ERV1 -23 711 1 4969 172 24 8 chr4 30089691 30090640 -172237707 + L1MA8 LINE L1 5325 6288 -3 273 57 0 0 chr4 30090849 30090884 -172237463 + (CA)n Simple_repeat Simple_repeat 1 35 0 1024 398 23 42 chr4 30091325 30092191 -172236156 - MERVL LTR ERVL -155 5330 4470 864 357 76 17 chr4 30092197 30092774 -172235573 - MERVL LTR ERVL -1465 4189 3579 399 320 80 4 chr4 30092938 30093163 -172235184 - L1ME3A LINE L1 -255 6710 6469 316 337 0 0 chr4 30093555 30093688 -172234659 + L1ME LINE L1 5483 5615 -549 28 71 0 0 chr4 30093913 30093969 -172234378 + AT_rich Low_complexity Low_complexity 1 56 0 2204 101 7 3 chr4 30094302 30094610 -172233737 + AluSc SINE Alu 1 309 0 2029 113 3 7 chr4 30094872 30095173 -172233174 - AluSg SINE Alu -5 305 6 380 292 104 77 chr4 30095331 30095773 -172232574 - L1M4 LINE L1 -3123 3023 2570 487 327 67 0 chr4 30096212 30096420 -172231927 + MLT1H LTR MaLR 62 283 -266 298 299 41 14 chr4 30096486 30096633 -172231714 + MLT1H LTR MaLR 386 536 -13 372 307 119 34 chr4 30096655 30097033 -172231314 - L1ME3A LINE L1 -990 5951 5542 257 209 38 48 chr4 30097060 30097165 -172231182 - L1ME3A LINE L1 -1469 5472 5369 2059 164 72 8 chr4 30097718 30098120 -172230227 - MSTA LTR MaLR 0 428 1 8697 184 21 11 chr4 30098120 30099652 -172228695 - MSTA-int LTR MaLR 0 1651 99 2116 136 0 7 chr4 30099652 30099960 -172228387 - AluSg SINE Alu -4 306 1 8697 184 21 11 chr4 30099960 30100061 -172228286 - MSTA-int LTR MaLR -1552 99 1 247 65 0 0 chr4 30100070 30100101 -172228246 - MSTA LTR MaLR -15 413 383 1623 172 156 5 chr4 30100113 30100485 -172227862 - MSTA LTR MaLR 0 428 1 28 86 0 0 chr4 30101299 30101369 -172226978 + AT_rich Low_complexity Low_complexity 1 70 0 22 0 0 0 chr4 30101474 30101496 -172226851 + AT_rich Low_complexity Low_complexity 1 22 0 2381 275 52 32 chr4 30102318 30104632 -172223715 - L1MCa LINE L1 -2883 4058 1536 255 94 226 0 chr4 30104757 30104810 -172223537 - L1MC2 LINE L1 -23 6321 6257 * 461 167 49 62 chr4 30104807 30104951 -172223396 - L1MCa LINE L1 -4937 1486 1345 499 279 44 0 chr4 30105360 30105543 -172222804 - LTR33A LTR ERVL 0 523 333 186 309 36 55 chr4 30105864 30105974 -172222373 + L2 LINE L2 2282 2389 -925 499 258 62 23 chr4 30106401 30106529 -172221818 - FRAM SINE Alu -19 157 25 582 141 27 49 chr4 30107890 30108074 -172220273 + CT-rich Low_complexity Low_complexity 1 180 0 260 339 49 68 chr4 30108251 30108620 -172219727 + MLT1L LTR MaLR 172 533 -82 2349 136 8 11 chr4 30108628 30109004 -172219343 + THE1C LTR MaLR 1 375 0 9422 129 53 7 chr4 30109004 30110505 -172217842 + THE1C-int LTR MaLR 1 1571 -9 2420 132 3 16 chr4 30110513 30110893 -172217454 + THE1C LTR MaLR 1 375 0 1204 222 94 60 chr4 30111565 30111948 -172216399 - MSTD LTR MaLR 0 396 1 6080 250 57 23 chr4 30111948 30113625 -172214722 - MSTD-int LTR MaLR 0 1735 1 1559 239 33 5 chr4 30113664 30114032 -172214315 - MSTD LTR MaLR -18 378 1 331 304 36 0 chr4 30114794 30114906 -172213441 - MLT1J2 LTR MaLR -71 379 264 4903 234 80 11 chr4 30114933 30116081 -172212266 + MLT1A1-int LTR MaLR 508 1735 0 1182 205 66 28 chr4 30116105 30116393 -172211954 + MLT1A1 LTR MaLR 60 358 -7 2281 96 3 3 chr4 30116795 30117096 -172211251 - AluSg SINE Alu -9 301 1 2867 186 75 34 chr4 30117747 30118452 -172209895 + L1MB4 LINE L1 5445 6178 -2 1594 103 165 11 chr4 30118583 30118844 -172209503 + AluSx SINE Alu 1 301 -11 302 317 137 24 chr4 30119682 30119931 -172208416 + L1ME LINE L1 5533 5809 -312 204 250 19 0 chr4 30120157 30120209 -172208138 + (TATATG)n Simple_repeat Simple_repeat 2 54 0 343 333 68 59 chr4 30121821 30122160 -172206187 + L1MEc LINE L1 38 379 -6017 1284 192 17 17 chr4 30122675 30122915 -172205432 - LTR32 LTR ERVL 0 471 232 466 139 0 0 chr4 30122974 30123046 -172205301 - LTR32 LTR ERVL -385 86 15 226 253 11 11 chr4 30123075 30123170 -172205177 + L1MEc LINE L1 871 965 -5240 320 224 53 11 chr4 30123239 30123355 -172204992 - L1MCa LINE L1 -4780 1646 1388 405 258 117 62 chr4 30123410 30123845 -172204502 - HAL1 LINE L1 -1048 1459 1001 395 331 144 27 chr4 30123922 30124179 -172204168 - HAL1 LINE L1 -1818 689 403 1492 241 26 9 chr4 30124195 30124543 -172203804 - MLT1A1 LTR MaLR -11 354 1 345 354 51 6 chr4 30124563 30124738 -172203609 - HAL1 LINE L1 -2130 377 195 781 222 66 0 chr4 30124786 30124953 -172203394 + MER58A DNA MER1_type 47 224 0 330 341 183 0 chr4 30125818 30125982 -172202365 + MIR SINE MIR 66 259 -3 22 56 0 0 chr4 30126013 30126049 -172202298 + AT_rich Low_complexity Low_complexity 1 36 0 414 162 0 0 chr4 30126275 30126349 -172201998 + (CA)n Simple_repeat Simple_repeat 2 75 0 240 35 0 0 chr4 30126759 30126788 -172201559 + (TTG)n Simple_repeat Simple_repeat 2 30 0 216 214 0 0 chr4 30127739 30127795 -172200552 + (TG)n Simple_repeat Simple_repeat 2 57 0 526 297 18 18 chr4 30128077 30128242 -172200105 + MLT2E LTR ERVL 29 193 -435 1571 138 0 0 chr4 30130134 30130380 -172197967 - Tigger5 DNA MER2_type 0 2323 2078 333 234 26 0 chr4 30130370 30130447 -172197900 - Tigger5 DNA MER2_type -2244 79 1 * 201 367 17 17 chr4 30130549 30130669 -172197678 - MIR SINE MIR -126 136 17 457 293 77 24 chr4 30131544 30131752 -172196595 - MIR SINE MIR -41 221 3 995 258 130 47 chr4 30131879 30132341 -172196006 + MLT2B1 LTR ERVL 9 452 -63 2076 153 15 3 chr4 30132341 30132682 -172195665 + MER7A DNA MER2_type 3 345 -1 995 258 130 47 chr4 30132682 30132730 -172195617 + MLT2B1 LTR ERVL 452 495 -20 239 246 0 0 chr4 30132731 30132796 -172195551 + MLT2B1 LTR ERVL 456 520 0 4875 74 1 3 chr4 30133073 30133725 -172194622 + L1PA8 LINE L1 5516 6166 -6 770 349 77 26 chr4 30134676 30135001 -172193346 + L2 LINE L2 2406 2713 -600 1351 236 143 18 chr4 30135001 30135450 -172192897 - MLT1D LTR MaLR 0 505 1 770 349 77 26 chr4 30135450 30135982 -172192365 + L2 LINE L2 2713 3311 -2 180 282 117 58 chr4 30136750 30136853 -172191494 + L2 LINE L2 3201 3309 -4 283 331 53 41 chr4 30137721 30137890 -172190457 - MIR3 SINE MIR 0 208 38 26 0 0 0 chr4 30138679 30138705 -172189642 + AT_rich Low_complexity Low_complexity 1 26 0 180 440 40 15 chr4 30138862 30139062 -172189285 + L2 LINE L2 2552 2756 -558 205 361 57 16 chr4 30139519 30139641 -172188706 + L2 LINE L2 3122 3248 -24 2535 139 8 54 chr4 30139757 30140239 -172188108 - LTR46 LTR ERV1 0 460 1 195 129 0 0 chr4 30140506 30140537 -172187810 + (TATG)n Simple_repeat Simple_repeat 2 32 0 318 26 0 0 chr4 30141065 30141104 -172187243 + (TG)n Simple_repeat Simple_repeat 1 39 0 185 0 40 0 chr4 30141103 30141128 -172187219 + (GA)n Simple_repeat Simple_repeat 1 26 0 * 188 216 0 0 chr4 30141434 30141471 -172186876 - MIR SINE MIR -11 251 215 346 413 43 14 chr4 30141917 30142266 -172186081 - L2 LINE L2 -489 2825 2467 407 303 86 36 chr4 30143616 30143837 -172184510 - MLT1L LTR MaLR -27 588 357 21 57 0 0 chr4 30143902 30143937 -172184410 + AT_rich Low_complexity Low_complexity 1 35 0 428 259 84 14 chr4 30144658 30144801 -172183546 + MIR SINE MIR 77 229 -33 252 381 79 30 chr4 30145073 30145573 -172182774 + L2 LINE L2 2671 3192 -121 1760 222 62 46 chr4 30146248 30146793 -172181554 + MLT2B3 LTR ERVL 1 554 0 252 281 133 49 chr4 30147119 30147322 -172181025 + MIR SINE MIR 30 249 -13 265 366 60 0 chr4 30147962 30148096 -172180251 + MIR SINE MIR 91 232 -30 248 307 79 26 chr4 30148230 30148344 -172180003 - MIR SINE MIR -123 139 20 21 0 0 0 chr4 30148926 30148947 -172179400 + AT_rich Low_complexity Low_complexity 1 21 0 194 0 39 0 chr4 30150639 30150665 -172177682 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 320 346 60 13 chr4 30151273 30151736 -172176611 + L1ME3A LINE L1 3843 4327 -1819 423 296 148 33 chr4 30151881 30152483 -172175864 + L1ME3A LINE L1 4510 5180 -966 546 314 70 39 chr4 30152559 30153155 -172175192 + L1ME3A LINE L1 5305 5919 -251 21 0 0 0 chr4 30153221 30153242 -172175105 + AT_rich Low_complexity Low_complexity 1 21 0 2126 114 7 0 chr4 30154209 30154517 -172173830 - AluSg SINE Alu 0 310 1 1628 240 48 18 chr4 30154920 30155420 -172172927 + Charlie1b DNA MER1_type 9 523 0 23 0 0 0 chr4 30155621 30155644 -172172703 + AT_rich Low_complexity Low_complexity 1 23 0 25 75 0 32 chr4 30155668 30155761 -172172586 + AT_rich Low_complexity Low_complexity 1 90 0 274 164 45 15 chr4 30155884 30155951 -172172396 - L1ME3 LINE L1 -57 6105 6037 655 291 52 8 chr4 30155978 30156229 -172172118 - L1ME LINE L1 -580 5651 5390 376 291 74 23 chr4 30156362 30156671 -172171676 - L1ME LINE L1 -1023 5192 4868 * 607 246 58 29 chr4 30156667 30157012 -172171335 - L1ME LINE L1 -4070 2326 1972 542 251 105 26 chr4 30157036 30157303 -172171044 - L1ME LINE L1 -4508 1888 1601 230 177 16 113 chr4 30157366 30157428 -172170919 - HAL1 LINE L1 -1645 862 807 34 42 0 0 chr4 30157450 30157498 -172170849 + AT_rich Low_complexity Low_complexity 1 48 0 268 111 0 0 chr4 30157631 30157667 -172170680 - U2 snRNA snRNA -152 36 1 28 0 0 0 chr4 30157750 30157778 -172170569 + AT_rich Low_complexity Low_complexity 1 28 0 231 211 33 0 chr4 30157965 30158055 -172170292 + (TA)n Simple_repeat Simple_repeat 1 93 0 27 0 0 0 chr4 30158075 30158102 -172170245 + AT_rich Low_complexity Low_complexity 1 27 0 24 53 0 0 chr4 30158212 30158250 -172170097 + AT_rich Low_complexity Low_complexity 1 38 0 2183 103 0 26 chr4 30158706 30159017 -172169330 + AluSg SINE Alu 1 303 -7 24 53 0 0 chr4 30159067 30159105 -172169242 + AT_rich Low_complexity Low_complexity 1 38 0 2503 34 10 10 chr4 30159343 30159638 -172168709 + AluY SINE Alu 3 297 -14 642 220 0 0 chr4 30160554 30160695 -172167652 - L1MB1 LINE L1 -3 6165 6025 286 314 25 25 chr4 30160769 30160890 -172167457 + MIR3 SINE MIR 82 202 -6 206 333 36 0 chr4 30163082 30163166 -172165181 + L3 LINE CR1 1402 1488 -89 189 386 0 0 chr4 30164019 30164076 -172164271 - MIR SINE MIR -152 110 54 1920 112 11 0 chr4 30167664 30167950 -172160397 - HERVL-A2 LTR ERVL -5365 289 1 1517 127 26 0 chr4 30167950 30168179 -172160168 - MLT2A2 LTR ERVL 0 453 219 1084 86 0 0 chr4 30168172 30168312 -172160035 - MLT2A1 LTR ERVL -304 140 1 * 328 223 210 45 chr4 30168312 30168469 -172159878 + MER2 DNA MER2_type 163 345 0 4906 186 42 1 chr4 30169174 30170145 -172158202 + L1PA16 LINE L1 4793 5836 -330 333 0 0 0 chr4 30170145 30170182 -172158165 + (CA)n Simple_repeat Simple_repeat 2 38 0 4906 186 42 1 chr4 30170182 30170521 -172157826 + L1PA16 LINE L1 5836 6160 -6 357 223 25 25 chr4 30170939 30171060 -172157287 + MER113 DNA MER1_type? 26 146 -375 1964 195 68 8 chr4 30171401 30171796 -172156551 - MSTB LTR MaLR -7 419 1 204 67 0 0 chr4 30171846 30171876 -172156471 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 2443 64 0 0 chr4 30171926 30172223 -172156124 - AluY SINE Alu -14 297 1 664 292 126 29 chr4 30172707 30173087 -172155260 - LTR50 LTR ERVL -43 752 336 239 308 77 0 chr4 30173197 30173288 -172155059 - LTR50 LTR ERVL -641 154 57 297 0 0 0 chr4 30173303 30173336 -172155011 + (CA)n Simple_repeat Simple_repeat 1 33 0 188 333 0 0 chr4 30173437 30173494 -172154853 + L3 LINE CR1 618 674 -903 2267 109 0 3 chr4 30173676 30173987 -172154360 + AluY SINE Alu 1 310 -1 377 327 20 33 chr4 30174100 30174253 -172154094 - MIR SINE MIR -8 254 104 1687 90 0 9 chr4 30174254 30174487 -172153860 - L1PA11 LINE L1 0 6174 5944 235 37 0 0 chr4 30174489 30174516 -172153831 + L1P4 LINE L1 5850 5876 -298 1931 231 23 50 chr4 30174618 30175133 -172153214 + MLT1D LTR MaLR 1 501 -4 279 0 0 0 chr4 30175223 30175254 -172153093 + (A)n Simple_repeat Simple_repeat 1 31 0 356 287 117 40 chr4 30175314 30175561 -172152786 + L2 LINE L2 2463 2728 -586 23 86 0 0 chr4 30175810 30175868 -172152479 + AT_rich Low_complexity Low_complexity 1 58 0 461 281 80 61 chr4 30175971 30176155 -172152192 - HAL1 LINE L1 -121 2386 2207 213 65 0 0 chr4 30176155 30176186 -172152161 + (CA)n Simple_repeat Simple_repeat 2 32 0 461 281 80 61 chr4 30176186 30176487 -172151860 - HAL1 LINE L1 -300 2207 1886 216 0 0 0 chr4 30176487 30176511 -172151836 + (CAA)n Simple_repeat Simple_repeat 1 24 0 461 281 80 61 chr4 30176511 30176596 -172151751 - HAL1 LINE L1 -621 1886 1804 5869 223 71 12 chr4 30177065 30178744 -172149603 + L1MA7 LINE L1 3287 5064 -1082 4678 170 26 6 chr4 30178724 30179620 -172148727 + L1MA7 LINE L1 5377 6290 -1 * 35 63 0 0 chr4 30179670 30179733 -172148614 + AT_rich Low_complexity Low_complexity 1 63 0 216 214 0 0 chr4 30179737 30179793 -172148554 + (TATATG)n Simple_repeat Simple_repeat 1 56 0 231 217 0 43 chr4 30179804 30179873 -172148474 + (TA)n Simple_repeat Simple_repeat 2 67 0 1450 186 46 52 chr4 30179884 30180272 -172148075 + L1MB1 LINE L1 5783 6168 0 2881 228 56 22 chr4 30180279 30181247 -172147100 + L1ME1 LINE L1 5154 6148 -18 21 0 0 0 chr4 30181252 30181273 -172147074 + AT_rich Low_complexity Low_complexity 1 21 0 237 33 0 0 chr4 30182502 30182532 -172145815 + (TG)n Simple_repeat Simple_repeat 1 30 0 312 0 62 0 chr4 30182915 30182963 -172145384 + (TCTTG)n Simple_repeat Simple_repeat 2 52 0 * 814 161 0 12 chr4 30182960 30183122 -172145225 + CT-rich Low_complexity Low_complexity 2 161 0 1743 181 13 0 chr4 30183122 30183420 -172144927 - AluJb SINE Alu 0 312 11 285 303 43 93 chr4 30183420 30183582 -172144765 - LTR16B LTR ERVL -310 154 1 610 338 44 51 chr4 30184179 30184767 -172143580 - MERVL LTR ERVL -660 4825 4242 554 304 12 0 chr4 30184935 30185103 -172143244 + ERVL LTR ERVL 2565 2734 -3030 2696 274 45 15 chr4 30185111 30185841 -172142506 + ERVL LTR ERVL 3107 3858 -1906 208 236 18 0 chr4 30186149 30186204 -172142143 + GA-rich Low_complexity Low_complexity 5 60 0 459 199 8 15 chr4 30186670 30186801 -172141546 + (TCTA)n Simple_repeat Simple_repeat 2 131 0 2438 81 0 3 chr4 30187182 30187492 -172140855 - AluY SINE Alu -2 309 1 1366 295 25 48 chr4 30188806 30189411 -172138936 + L2 LINE L2 2552 3149 -164 1406 260 62 34 chr4 30189433 30189899 -172138448 + MLT2B1 LTR ERVL 2 480 -40 255 215 0 0 chr4 30189921 30189986 -172138361 + (TA)n Simple_repeat Simple_repeat 1 65 0 319 282 18 18 chr4 30190080 30190190 -172138157 + L2 LINE L2 3146 3255 -58 22 0 0 0 chr4 30191215 30191237 -172137110 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr4 30191395 30191420 -172136927 + AT_rich Low_complexity Low_complexity 1 25 0 1786 162 24 27 chr4 30191618 30191994 -172136353 - THE1C LTR MaLR 0 375 1 220 414 40 0 chr4 30192020 30192119 -172136228 + L2 LINE L2 3137 3239 -33 301 311 104 49 chr4 30192459 30192704 -172135643 + MIR SINE MIR 7 262 0 252 333 98 89 chr4 30193107 30193353 -172134994 + L2 LINE L2 2929 3176 -96 2527 99 96 10 chr4 30193540 30193945 -172134402 + LTR7 LTR ERV1 1 440 -10 1978 81 0 0 chr4 30193955 30194227 -172134120 + HERVH LTR ERV1 1 272 -7441 10862 116 21 36 chr4 30194227 30196161 -172132186 + HERVH LTR ERV1 1213 3288 -4425 3963 133 105 29 chr4 30196162 30197549 -172130798 - pTR5 LTR ERV1 0 2606 1524 9929 130 34 17 chr4 30197553 30199176 -172129171 + HERVH LTR ERV1 3500 5149 -2564 2710 92 47 12 chr4 30199193 30199615 -172128732 + HERVH LTR ERV1 7277 7713 0 2485 97 97 7 chr4 30199615 30200026 -172128321 + LTR7 LTR ERV1 1 448 -2 269 281 66 79 chr4 30200643 30200792 -172127555 + MIR SINE MIR 46 194 -63 1397 251 76 21 chr4 30200977 30201307 -172127040 - MLT2F LTR ERVL 0 663 353 342 0 0 0 chr4 30201307 30201345 -172127002 + (CA)n Simple_repeat Simple_repeat 2 39 0 1397 251 76 21 chr4 30201345 30201599 -172126748 - MLT2F LTR ERVL -310 353 1 22 70 0 0 chr4 30202946 30202989 -172125358 + AT_rich Low_complexity Low_complexity 1 43 0 716 284 123 7 chr4 30203021 30203306 -172125041 - LTR50 LTR ERVL -7 788 471 330 230 70 117 chr4 30203418 30203648 -172124699 - LTR50 LTR ERVL -576 219 1 34 0 0 0 chr4 30204093 30204127 -172124220 + AT_rich Low_complexity Low_complexity 1 34 0 24 32 0 0 chr4 30205761 30205792 -172122555 + AT_rich Low_complexity Low_complexity 1 31 0 546 74 0 0 chr4 30206359 30206440 -172121907 - L1PA13 LINE L1 -3 6160 6080 1804 147 25 4 chr4 30206621 30206740 -172121607 + AluSx SINE Alu 1 116 -196 189 0 0 0 chr4 30206740 30206761 -172121586 + (CTA)n Simple_repeat Simple_repeat 1 21 0 1804 147 25 4 chr4 30206761 30206920 -172121427 + AluSx SINE Alu 116 285 -27 847 271 78 8 chr4 30206981 30207461 -172120886 - L1MD2 LINE L1 -54 6699 6036 682 191 0 18 chr4 30207510 30207678 -172120669 + C-rich Low_complexity Low_complexity 2 166 0 6642 255 65 35 chr4 30207724 30211352 -172116995 - L1MD2 LINE L1 -743 5797 2235 228 244 0 0 chr4 30211598 30211643 -172116704 + MIR SINE MIR 189 233 -29 379 367 114 8 chr4 30211894 30212158 -172116189 + LTR16A LTR ERVL 159 450 0 1492 186 20 57 chr4 30212694 30213048 -172115299 - MLT1B LTR MaLR -49 341 1 5590 112 25 2 chr4 30213485 30214382 -172113965 - L1PA13 LINE L1 -4 6159 5060 1848 185 180 5 chr4 30214381 30214819 -172113528 + L1PA13 LINE L1 4520 5034 -1112 * 14347 194 29 9 chr4 30215105 30221062 -172107285 - L1PB1 LINE L1 -1 6866 636 1052 130 76 0 chr4 30221064 30221249 -172107098 - L1PB1 LINE L1 -6663 200 2 269 307 11 11 chr4 30221478 30221566 -172106781 + CT-rich Low_complexity Low_complexity 4 91 0 372 242 108 0 chr4 30221863 30221983 -172106364 - MER115 DNA AcHobo -12 681 549 473 369 25 41 chr4 30222121 30222435 -172105912 - MER115 DNA AcHobo -323 370 62 2398 161 16 32 chr4 30224450 30224845 -172103502 - Tigger2a DNA MER2_type -2275 433 44 2138 106 0 7 chr4 30224845 30225147 -172103200 + AluY SINE Alu 3 302 -9 2398 161 16 32 chr4 30225147 30225191 -172103156 - Tigger2a DNA MER2_type -2664 44 1 25 83 0 0 chr4 30225381 30225441 -172102906 + AT_rich Low_complexity Low_complexity 1 60 0 263 203 8 25 chr4 30226018 30226136 -172102211 + (TA)n Simple_repeat Simple_repeat 2 117 0 182 133 33 33 chr4 30227309 30227369 -172100978 + (CATATA)n Simple_repeat Simple_repeat 5 64 0 197 382 32 49 chr4 30229187 30229310 -172099037 + L2 LINE L2 3193 3313 0 628 228 110 14 chr4 30229496 30229715 -172098632 - LTR18B LTR ERVL -9 605 366 726 271 59 20 chr4 30229776 30229979 -172098368 - LTR18A LTR ERVL -146 211 1 292 182 0 0 chr4 30230086 30230130 -172098217 - HERVL18 LTR ERVL -874 5173 5130 * 2324 152 18 18 chr4 30230123 30230472 -172097875 - HERVL18 LTR ERVL -1266 4781 4430 3081 63 78 2 chr4 30230472 30230885 -172097462 - MLT2A1 LTR ERVL 0 444 1 2324 152 18 18 chr4 30230885 30230923 -172097424 - HERVL18 LTR ERVL -1616 4431 4394 9432 143 16 11 chr4 30230925 30232379 -172095968 - HERVL18 LTR ERVL -2468 3579 2119 1400 171 3 21 chr4 30232378 30232740 -172095607 - HERVL18 LTR ERVL -4237 1810 1340 * 1433 187 34 4 chr4 30232742 30233010 -172095337 - HERVL18 LTR ERVL -5304 743 468 1186 203 63 7 chr4 30233000 30233271 -172095076 - HERVL18 LTR ERVL -5743 304 1 * 708 241 109 45 chr4 30233271 30233591 -172094756 - LTR18A LTR ERVL 0 357 20 290 159 0 0 chr4 30233593 30233637 -172094710 - LTR18A LTR ERVL -313 44 1 24 0 0 0 chr4 30234449 30234473 -172093874 + AT_rich Low_complexity Low_complexity 1 24 0 833 321 63 46 chr4 30236001 30236660 -172091687 - L2 LINE L2 -88 3225 2541 1065 242 50 14 chr4 30236683 30236960 -172091387 - L1MA10 LINE L1 -16 6318 6032 499 335 112 0 chr4 30237122 30237355 -172090992 - L2 LINE L2 -1218 2096 1838 1348 294 64 77 chr4 30237910 30238942 -172089405 + L2 LINE L2 2292 3305 -8 223 239 36 116 chr4 30238956 30239094 -172089253 - MIR SINE MIR -65 197 71 7443 33 0 1 chr4 30239130 30240538 -172087809 + L1PA3 LINE L1 4771 6177 0 22 0 0 0 chr4 30240975 30240997 -172087350 + AT_rich Low_complexity Low_complexity 1 22 0 2038 109 0 11 chr4 30241890 30242175 -172086172 - AluSc SINE Alu -8 301 20 22 35 0 0 chr4 30242441 30242470 -172085877 + AT_rich Low_complexity Low_complexity 1 29 0 291 130 0 0 chr4 30243042 30243096 -172085251 + (CAT)n Simple_repeat Simple_repeat 3 56 0 242 309 47 73 chr4 30243244 30243435 -172084912 + MIR SINE MIR 53 238 -24 498 233 106 42 chr4 30243840 30244029 -172084318 + MIR SINE MIR 13 213 -49 255 311 82 30 chr4 30244667 30244802 -172083545 + L2 LINE L2 3171 3312 -1 213 184 0 0 chr4 30245182 30245220 -172083127 + MIR SINE MIR 80 117 -145 435 307 22 0 chr4 30245261 30245398 -172082949 + MIR SINE MIR 79 218 -44 1191 212 81 28 chr4 30247222 30247618 -172080729 - Charlie1 DNA MER1_type -2 2759 2343 239 302 0 16 chr4 30247617 30247680 -172080667 - Charlie1 DNA MER1_type -2691 70 9 * 426 345 65 0 chr4 30247782 30247982 -172080365 - MIR SINE MIR -44 218 6 1358 228 12 0 chr4 30248284 30248539 -172079808 + Tigger7 DNA MER2_type 10 267 -466 322 200 0 0 chr4 30248538 30248593 -172079754 + Tigger7 DNA MER2_type 2490 2544 -43 * 274 370 40 23 chr4 30249432 30249605 -172078742 - MLT1J LTR MaLR -94 417 242 197 356 25 25 chr4 30249810 30249928 -172078419 - L2 LINE L2 0 3313 3196 3868 250 21 9 chr4 30249928 30251091 -172077256 - L1P LINE L1 -2481 3665 2489 564 186 103 26 chr4 30251102 30251258 -172077089 + L1 LINE L1 3658 3825 -2321 * 3549 213 32 10 chr4 30251232 30252112 -172076235 + L1MA2 LINE L1 2958 3856 -2290 5913 163 46 4 chr4 30252116 30253625 -172074722 + L1MA2 LINE L1 4720 6297 -7 6159 192 19 29 chr4 30253634 30253974 -172074373 + L1PA15 LINE L1 3775 4117 -2048 2133 182 39 10 chr4 30253974 30254386 -172073961 - MSTA LTR MaLR 0 428 5 8476 183 36 10 chr4 30254388 30254472 -172073875 - MSTA-int LTR MaLR 0 1651 1571 2120 116 0 23 chr4 30254472 30254643 -172073704 - AluSp SINE Alu -17 296 133 180 0 0 0 chr4 30254643 30254663 -172073684 + (TA)n Simple_repeat Simple_repeat 1 20 0 2120 116 0 23 chr4 30254663 30254793 -172073554 - AluSp SINE Alu -180 133 2 8476 183 36 10 chr4 30254793 30256317 -172072030 - MSTA-int LTR MaLR -80 1571 1 2066 168 75 10 chr4 30256317 30256717 -172071630 - MSTA LTR MaLR 0 428 3 6159 192 19 29 chr4 30256717 30256815 -172071532 + L1PA15 LINE L1 4117 4214 -1951 1909 135 7 0 chr4 30256815 30257097 -172071250 - AluSx SINE Alu -17 295 12 6159 192 19 29 chr4 30257097 30257417 -172070930 + L1PA15 LINE L1 4214 4536 -1629 1765 159 24 0 chr4 30257417 30257707 -172070640 + AluSx SINE Alu 3 299 -13 6159 192 19 29 chr4 30257707 30258681 -172069666 + L1PA15 LINE L1 4536 5483 -682 2187 87 0 13 chr4 30258681 30258992 -172069355 + AluY SINE Alu 1 307 -4 6159 192 19 29 chr4 30258992 30259663 -172068684 + L1PA15 LINE L1 5483 6159 -6 372 315 173 21 chr4 30259690 30260081 -172068266 - L2 LINE L2 -135 3178 2733 220 336 112 0 chr4 30260215 30260322 -172068025 - MIR SINE MIR -95 167 49 561 177 93 0 chr4 30260386 30260417 -172067930 - L1MB1 LINE L1 -331 5837 5810 330 26 0 0 chr4 30260417 30260456 -172067891 + (TA)n Simple_repeat Simple_repeat 2 40 0 561 177 93 0 chr4 30260456 30260564 -172067783 - L1MB1 LINE L1 -358 5810 5669 3784 202 48 1 chr4 30260566 30261323 -172067024 + MER6 DNA MER2_type 70 861 -4 2831 245 29 7 chr4 30261324 30262164 -172066183 - L1 LINE L1 -2396 3814 2957 10565 181 31 8 chr4 30262173 30264395 -172063952 - L1MA2 LINE L1 0 7723 5404 2141 107 0 16 chr4 30264395 30264704 -172063643 - AluSc SINE Alu -5 304 1 10565 181 31 8 chr4 30264704 30265795 -172062552 - L1MA2 LINE L1 -2319 5404 4339 5063 214 23 13 chr4 30265791 30266844 -172061503 - L1MA2 LINE L1 -6487 1078 16 * 4583 260 82 38 chr4 30266848 30268494 -172059853 - L1 LINE L1 -3233 2977 1404 222 91 0 0 chr4 30268494 30268527 -172059820 + (TG)n Simple_repeat Simple_repeat 2 34 0 4583 260 82 38 chr4 30268527 30268743 -172059604 - L1 LINE L1 -4806 1404 1199 192 40 0 0 chr4 30268743 30268768 -172059579 + (TC)n Simple_repeat Simple_repeat 2 26 0 4583 260 82 38 chr4 30268768 30270065 -172058282 - L1 LINE L1 -5011 1199 3 327 49 0 0 chr4 30270689 30270730 -172057617 + (CA)n Simple_repeat Simple_repeat 2 42 0 284 299 0 0 chr4 30271206 30271283 -172057064 - MLT1L LTR MaLR -536 79 3 261 298 164 19 chr4 30271301 30271405 -172056942 + MIR SINE MIR 49 167 -95 484 193 0 55 chr4 30271419 30271528 -172056819 + FLAM_C SINE Alu 39 141 -2 23 33 0 0 chr4 30271528 30271558 -172056789 + AT_rich Low_complexity Low_complexity 1 30 0 21 71 0 0 chr4 30271847 30271889 -172056458 + AT_rich Low_complexity Low_complexity 1 42 0 404 329 81 24 chr4 30272273 30272519 -172055828 - MIR SINE MIR 0 262 3 28 61 0 0 chr4 30273376 30273425 -172054922 + AT_rich Low_complexity Low_complexity 1 49 0 975 201 80 128 chr4 30273875 30274274 -172054073 - MER67C LTR ERV1 -2 512 95 2076 98 3 7 chr4 30274274 30274559 -172053788 + AluSx SINE Alu 13 296 -16 438 20 0 0 chr4 30274568 30274619 -172053728 + (CA)n Simple_repeat Simple_repeat 2 52 0 975 201 80 128 chr4 30274619 30274736 -172053611 - MER67C LTR ERV1 -427 87 11 564 40 0 0 chr4 30275482 30275556 -172052791 + AluY SINE Alu 231 304 -8 393 75 0 0 chr4 30275556 30275609 -172052738 + (TA)n Simple_repeat Simple_repeat 2 54 0 27 0 0 0 chr4 30275681 30275708 -172052639 + AT_rich Low_complexity Low_complexity 1 27 0 1547 90 0 0 chr4 30275806 30276006 -172052341 - AluSc SINE Alu -22 287 88 915 105 7 14 chr4 30276006 30276149 -172052198 + AluSg/x SINE Alu 170 311 -1 205 284 148 11 chr4 30276149 30276237 -172052110 - L2 LINE L2 -589 2725 2626 286 292 76 40 chr4 30278854 30279155 -172049192 - L1ME4a LINE L1 -181 5940 5629 213 186 17 17 chr4 30280785 30280844 -172047503 + (TA)n Simple_repeat Simple_repeat 2 60 0 939 201 70 5 chr4 30281325 30281524 -172046823 - AluJb SINE Alu -16 296 85 253 317 21 35 chr4 30282473 30282615 -172045732 - L2 LINE L2 -1067 2247 2108 21 89 0 0 chr4 30282724 30282780 -172045567 + AT_rich Low_complexity Low_complexity 1 56 0 3246 100 7 0 chr4 30282973 30283423 -172044924 + MLT2A2 LTR ERVL 1 453 0 21 95 0 0 chr4 30284197 30284260 -172044087 + AT_rich Low_complexity Low_complexity 1 63 0 22 70 0 0 chr4 30285437 30285480 -172042867 + AT_rich Low_complexity Low_complexity 1 43 0 445 311 68 37 chr4 30286017 30286445 -172041902 + L1MDa LINE L1 1534 1974 -4566 4216 40 28 4 chr4 30286479 30287008 -172041339 - L1PA5 LINE L1 0 6154 5613 22 35 0 0 chr4 30287239 30287268 -172041079 + AT_rich Low_complexity Low_complexity 1 29 0 348 346 64 26 chr4 30287876 30288142 -172040205 + L1ME LINE L1 5530 5805 -316 7333 197 39 18 chr4 30288151 30290095 -172038252 + L1PB4 LINE L1 3488 5480 -744 2670 196 22 75 chr4 30290209 30290927 -172037420 + L1PB4 LINE L1 5476 6155 -1 315 173 63 16 chr4 30291180 30291307 -172037040 + (TA)n Simple_repeat Simple_repeat 1 133 0 322 266 43 103 chr4 30291353 30291537 -172036810 + MIR SINE MIR 46 218 -44 2044 142 0 0 chr4 30291666 30291976 -172036371 - AluSx SINE Alu -2 310 1 1844 118 73 0 chr4 30292720 30293009 -172035338 - AluSx SINE Alu -2 310 1 21 36 0 0 chr4 30295566 30295594 -172032753 + AT_rich Low_complexity Low_complexity 1 28 0 12408 123 15 29 chr4 30295620 30296681 -172031666 + L1PA6 LINE L1 11 1031 -5115 2238 100 3 3 chr4 30296681 30296990 -172031357 - AluY SINE Alu 0 311 3 12408 123 15 29 chr4 30296990 30297950 -172030397 + L1PA6 LINE L1 1031 2003 -4143 16695 76 1 0 chr4 30297950 30301002 -172027345 + L1PA6 LINE L1 3091 6153 -1 2266 267 63 36 chr4 30301002 30301759 -172026588 + L1MC/D LINE L1 113 890 -5969 1199 197 29 0 chr4 30301759 30302003 -172026344 - MER57A LTR ERV1 0 403 153 2353 146 5 8 chr4 30302003 30302379 -172025968 - THE1C LTR MaLR 0 375 1 9847 129 42 3 chr4 30302388 30303896 -172024451 - THE1C-int LTR MaLR -10 1570 4 2456 118 5 13 chr4 30303896 30304270 -172024077 - THE1C LTR MaLR -4 371 1 714 183 0 0 chr4 30304274 30304400 -172023947 - MER57A LTR ERV1 -250 153 28 3097 213 51 20 chr4 30304401 30305322 -172023025 + L1MC/D LINE L1 922 1868 -4987 827 225 62 0 chr4 30305332 30305510 -172022837 - MLT1D LTR MaLR 0 505 317 57 61 0 0 chr4 30306027 30306126 -172022221 + AT_rich Low_complexity Low_complexity 1 99 0 568 242 39 35 chr4 30307005 30307261 -172021086 + L1MC/D LINE L1 3301 3557 -3400 464 77 0 0 chr4 30307262 30307327 -172021020 + L1PA4 LINE L1 6083 6147 -8 584 229 84 49 chr4 30307331 30307718 -172020629 + L1MC/D LINE L1 3662 4039 -2918 * 1886 179 99 11 chr4 30307690 30308126 -172020221 + L1MC/D LINE L1 6065 6538 -515 2113 124 0 0 chr4 30308493 30308792 -172019555 - AluSc SINE Alu -10 299 1 231 317 166 55 chr4 30308909 30309191 -172019156 + L2 LINE L2 1836 2176 -1138 1982 155 0 13 chr4 30309191 30309508 -172018839 - AluSq SINE Alu 0 313 1 231 317 166 55 chr4 30309508 30309623 -172018724 + L2 LINE L2 2176 2277 -1037 2301 92 0 16 chr4 30309859 30310164 -172018183 + AluSg SINE Alu 1 300 -10 586 287 70 41 chr4 30310281 30310525 -172017822 - MIR SINE MIR 0 262 12 201 250 73 15 chr4 30310644 30310712 -172017635 + L3 LINE CR1 215 286 -1291 294 344 79 32 chr4 30311703 30312072 -172016275 - L2 LINE L2 -2 3311 2926 302 177 25 13 chr4 30312839 30312918 -172015429 + L1MD1 LINE L1 6152 6231 -11 367 270 70 87 chr4 30312943 30313128 -172015219 + MLT1G LTR MaLR 92 273 -317 212 308 0 0 chr4 30313372 30313437 -172014910 + CT-rich Low_complexity Low_complexity 3 67 0 1409 334 101 44 chr4 30313596 30314774 -172013573 - L2 LINE L2 -297 3016 1764 206 211 0 0 chr4 30314838 30314876 -172013471 - MIR SINE MIR -108 154 117 199 171 0 0 chr4 30315656 30315691 -172012656 - L2 LINE L2 0 3272 3238 489 248 47 0 chr4 30315701 30315830 -172012517 - L2 LINE L2 0 3313 3179 641 34 0 22 chr4 30316534 30316623 -172011724 + (TCTA)n Simple_repeat Simple_repeat 4 90 0 260 273 0 11 chr4 30316983 30317071 -172011276 - L1MC4 LINE L1 -1339 6703 6617 664 117 22 39 chr4 30317093 30317273 -172011074 + (TATG)n Simple_repeat Simple_repeat 2 178 0 288 177 52 31 chr4 30317273 30317369 -172010978 + (TATATG)n Simple_repeat Simple_repeat 5 102 0 244 138 35 17 chr4 30317369 30317427 -172010920 - L1MCa LINE L1 -4362 2064 2006 242 313 71 36 chr4 30317467 30317579 -172010768 - MIR SINE MIR -72 190 75 2437 144 44 2 chr4 30317857 30318268 -172010079 - MSTA LTR MaLR 0 428 1 307 277 20 10 chr4 30318273 30318374 -172009973 + L1MEd LINE L1 57 158 -5961 254 231 65 112 chr4 30318418 30318587 -172009760 + L1MEd LINE L1 274 434 -5685 215 298 21 32 chr4 30319811 30319905 -172008442 - L2 LINE L2 -87 3226 3134 217 93 23 23 chr4 30320773 30320816 -172007531 + (TA)n Simple_repeat Simple_repeat 1 43 0 21 36 0 0 chr4 30322580 30322608 -172005739 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr4 30323018 30323041 -172005306 + AT_rich Low_complexity Low_complexity 1 23 0 599 273 53 19 chr4 30323326 30323535 -172004812 - MER20 DNA MER1_type 0 219 4 372 271 150 0 chr4 30323614 30323747 -172004600 + Charlie2 DNA MER1_type 318 470 -2312 487 133 0 20 chr4 30323814 30323912 -172004435 + (GGAA)n Simple_repeat Simple_repeat 3 98 0 661 104 0 17 chr4 30324020 30324135 -172004212 + (GGAA)n Simple_repeat Simple_repeat 3 115 0 2181 131 0 0 chr4 30325166 30325478 -172002869 - AluSx SINE Alu 0 312 1 317 243 0 14 chr4 30326440 30326514 -172001833 + Tigger5 DNA MER2_type 7 79 -2244 401 213 25 0 chr4 30326563 30326643 -172001704 + Tigger5 DNA MER2_type 2242 2323 0 387 41 0 0 chr4 30326863 30326912 -172001435 + (CA)n Simple_repeat Simple_repeat 2 50 0 459 152 0 0 chr4 30328487 30328566 -171999781 + (TG)n Simple_repeat Simple_repeat 2 80 0 27 49 0 0 chr4 30328912 30328953 -171999394 + AT_rich Low_complexity Low_complexity 1 41 0 25 0 0 0 chr4 30329447 30329472 -171998875 + AT_rich Low_complexity Low_complexity 1 25 0 2049 117 3 7 chr4 30329626 30329916 -171998431 - AluSq SINE Alu -24 289 1 1315 180 63 4 chr4 30329975 30330214 -171998133 - AluJo SINE Alu -47 265 13 735 250 47 5 chr4 30330241 30330433 -171997914 + L1M4c LINE L1 17 216 -6168 4541 147 90 35 chr4 30330433 30331442 -171996905 + pTR5 LTR ERV1 743 2021 -417 329 257 10 0 chr4 30331443 30331544 -171996803 + LTR30 LTR ERV1 541 642 -80 2341 93 0 0 chr4 30331544 30331867 -171996480 + pTR5 LTR ERV1 66 388 -2050 1567 210 44 26 chr4 30331867 30332210 -171996137 + L1M4c LINE L1 209 557 -5827 701 94 17 2 chr4 30332222 30332457 -171995890 + AluSx SINE Alu 1 294 -15 701 122 0 0 chr4 30332500 30332607 -171995740 + AluSg/x SINE Alu 204 310 0 892 188 30 20 chr4 30332609 30332806 -171995541 + L1M4c LINE L1 570 768 -5616 1291 248 39 3 chr4 30332806 30333092 -171995255 + MLT1A1 LTR MaLR 1 296 -69 1307 214 33 85 chr4 30333092 30333490 -171994857 + MLT2B3 LTR ERVL 1 377 -177 2081 99 0 64 chr4 30333492 30333680 -171994667 - AluSx SINE Alu -3 309 111 213 45 45 23 chr4 30333680 30333724 -171994623 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 2218 90 0 0 chr4 30333724 30334002 -171994345 - AluY SINE Alu -30 281 4 2081 99 0 64 chr4 30334002 30334124 -171994223 - AluSx SINE Alu -199 113 18 4303 102 23 58 chr4 30334210 30334919 -171993428 - LTR12 LTR ERV1 0 688 5 2280 179 16 23 chr4 30334935 30335543 -171992804 - pTR5 LTR ERV1 -1094 1344 741 279 0 0 0 chr4 30337419 30337450 -171990897 + (TG)n Simple_repeat Simple_repeat 2 32 0 492 198 16 8 chr4 30337639 30337765 -171990582 - L1 LINE L1 -804 5342 5216 377 179 0 12 chr4 30337753 30337837 -171990510 - L1M4c LINE L1 -5190 1194 1112 * 2757 230 19 20 chr4 30337827 30338301 -171990046 + L1MC3 LINE L1 7066 7540 -245 1940 154 12 35 chr4 30338301 30338646 -171989701 - MER1B DNA MER1_type 0 337 1 2757 230 19 20 chr4 30338646 30338875 -171989472 + L1MC3 LINE L1 7540 7768 -17 1319 195 61 0 chr4 30338892 30339093 -171989254 + L1 LINE L1 4234 4421 -1725 2190 118 7 0 chr4 30339093 30339397 -171988950 + AluSp SINE Alu 1 306 -7 1319 195 61 0 chr4 30339397 30339554 -171988793 + L1 LINE L1 4421 4614 -1532 949 261 12 0 chr4 30339554 30339799 -171988548 + L1MB3 LINE L1 4013 4260 -1886 708 235 6 16 chr4 30339813 30339996 -171988351 + L1MB3 LINE L1 4735 4915 -1231 1525 249 2 2 chr4 30339998 30340392 -171987955 - L1 LINE L1 -979 5167 4774 324 231 24 0 chr4 30340408 30340508 -171987839 + L1MB3 LINE L1 5579 5682 -489 10432 147 40 30 chr4 30340509 30342426 -171985921 - Tigger1 DNA MER2_type 0 2418 483 228 266 64 11 chr4 30342450 30342476 -171985871 - L1MA4A LINE L1 -15 6288 6263 3637 179 29 8 chr4 30342476 30343224 -171985123 - L1PB4 LINE L1 -23 6133 5370 876 166 13 0 chr4 30343225 30343376 -171984971 - Tigger1 DNA MER2_type -1936 482 330 816 215 31 20 chr4 30343374 30343569 -171984778 - Tigger1 DNA MER2_type -2221 197 1 * 2254 164 17 54 chr4 30343569 30344026 -171984321 + L1MB3 LINE L1 5682 6119 -64 2092 134 10 0 chr4 30344026 30344324 -171984023 + AluSx SINE Alu 1 301 -11 2254 164 17 54 chr4 30344324 30344383 -171983964 + L1MB3 LINE L1 6119 6179 -4 229 344 36 18 chr4 30344446 30344836 -171983511 + L1 LINE L1 3842 4238 -1908 350 248 41 25 chr4 30345101 30345222 -171983125 + L1ME2 LINE L1 3602 3724 -2422 2589 277 78 23 chr4 30345247 30346913 -171981434 + L1ME2 LINE L1 3807 5563 -601 2041 160 6 17 chr4 30346913 30347264 -171981083 + THE1C LTR MaLR 1 401 -27 440 87 0 14 chr4 30347372 30347441 -171980906 - L1PB1 LINE L1 -28 6123 6056 3093 217 18 3 chr4 30347444 30348172 -171980175 + L1 LINE L1 4663 5401 -745 1062 217 114 89 chr4 30348194 30348271 -171980076 + L1ME2 LINE L1 5539 5613 -551 186 103 0 0 chr4 30348271 30348300 -171980047 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 1062 217 114 89 chr4 30348300 30348376 -171979971 + L1ME2 LINE L1 5613 5686 -478 1922 119 0 0 chr4 30348376 30348629 -171979718 + AluSg SINE Alu 1 253 -57 1062 217 114 89 chr4 30348629 30349038 -171979309 + L1ME2 LINE L1 5686 6143 -21 787 260 215 16 chr4 30349061 30349195 -171979152 + L1MC4 LINE L1 6473 6579 -1463 288 0 0 0 chr4 30349195 30349227 -171979120 + (TG)n Simple_repeat Simple_repeat 1 32 0 787 260 215 16 chr4 30349227 30349589 -171978758 + L1MC4 LINE L1 6579 7068 -974 201 74 0 0 chr4 30349590 30349617 -171978730 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 980 262 123 62 chr4 30349673 30350459 -171977888 + L1MC4 LINE L1 7209 8042 0 2036 179 41 24 chr4 30350469 30350971 -171977376 + MLT2A2 LTR ERVL 1 510 -44 232 132 26 92 chr4 30350969 30351045 -171977302 + MLT2C2 LTR ERVL 393 463 -1 * 379 242 58 127 chr4 30351086 30351346 -171977001 + HAL1 LINE L1 378 619 -1888 410 254 65 7 chr4 30351469 30351607 -171976740 + L2 LINE L2 2376 2521 -793 256 303 36 51 chr4 30351707 30351902 -171976445 + L2 LINE L2 3119 3310 -3 237 306 111 9 chr4 30352085 30352193 -171976154 - MIR SINE MIR -72 190 72 1970 221 81 12 chr4 30352223 30352969 -171975378 - L1ME2 LINE L1 -16 6566 5743 2641 259 44 37 chr4 30353049 30354428 -171973919 - L1ME2 LINE L1 -2691 3873 2526 729 284 68 46 chr4 30354613 30355109 -171973238 - L1MC4a LINE L1 -303 5818 5392 957 356 141 22 chr4 30355139 30356139 -171972208 - L3 LINE CR1 -166 1411 293 948 82 8 0 chr4 30356169 30356303 -171972044 - L1PB1 LINE L1 0 6151 6017 2717 251 67 13 chr4 30356303 30357433 -171970914 - L1ME2 LINE L1 -4605 1959 671 278 250 15 0 chr4 30357434 30357502 -171970845 + L1M4b LINE L1 435 503 -6356 554 294 68 36 chr4 30357535 30357787 -171970560 + MIR SINE MIR 1 260 -2 22 0 0 0 chr4 30357791 30357813 -171970534 + AT_rich Low_complexity Low_complexity 1 22 0 774 202 6 17 chr4 30357919 30358092 -171970255 + LTR56 LTR ERV1 10 180 -265 191 307 67 13 chr4 30358093 30358168 -171970179 - MER5A DNA MER1_type -103 86 8 342 0 0 0 chr4 30359517 30359555 -171968792 + (CA)n Simple_repeat Simple_repeat 1 38 0 21 89 0 0 chr4 30360760 30360816 -171967531 + AT_rich Low_complexity Low_complexity 1 56 0 2239 111 0 0 chr4 30361018 30361325 -171967022 + AluY SINE Alu 1 307 -4 778 310 43 21 chr4 30362329 30362658 -171965689 - MLT1I LTR MaLR -55 354 19 1709 195 76 22 chr4 30362774 30363180 -171965167 - MSTA LTR MaLR 0 428 1 313 316 14 18 chr4 30363673 30363891 -171964456 + L1 LINE L1 3884 4100 -2046 285 305 42 0 chr4 30363989 30364084 -171964263 + L2 LINE L2 2293 2391 -923 286 265 100 41 chr4 30364090 30364260 -171964087 - MLT1F1 LTR MaLR -5 562 383 25 0 0 0 chr4 30364383 30364408 -171963939 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr4 30364594 30364617 -171963730 + AT_rich Low_complexity Low_complexity 1 23 0 203 233 47 12 chr4 30364785 30364871 -171963476 + (TTATA)n Simple_repeat Simple_repeat 2 90 0 932 259 27 23 chr4 30364894 30365157 -171963190 - L1ME LINE L1 -345 5776 5513 22 0 0 0 chr4 30365352 30365374 -171962973 + AT_rich Low_complexity Low_complexity 1 22 0 206 202 37 55 chr4 30365412 30365521 -171962826 + T-rich Low_complexity Low_complexity 3 109 0 504 165 0 0 chr4 30365579 30365692 -171962655 - AluSg/x SINE Alu 0 312 200 183 261 34 80 chr4 30368473 30368561 -171959786 - MIR3 SINE MIR -17 191 108 1657 143 56 0 chr4 30368791 30369121 -171959226 - AluSx SINE Alu 0 345 1 313 300 0 0 chr4 30369122 30369192 -171959155 + Tigger5 DNA MER2_type 2254 2323 0 686 270 92 65 chr4 30369731 30370528 -171957819 - L1ME LINE L1 -1235 4911 4094 395 306 25 16 chr4 30370639 30370760 -171957587 - L2 LINE L2 -1 3312 3191 394 321 57 28 chr4 30371500 30372101 -171956246 - L1ME LINE L1 -2404 3742 3125 206 31 0 31 chr4 30373675 30373707 -171954640 + (TTATA)n Simple_repeat Simple_repeat 2 32 0 830 209 0 0 chr4 30373707 30373855 -171954492 - FRAM SINE Alu -29 147 1 3039 177 9 2 chr4 30373878 30374410 -171953937 - L1PA16 LINE L1 -1 6165 5630 2258 137 14 13 chr4 30374410 30374876 -171953471 + L1PA16 LINE L1 5158 5625 -541 24 32 0 0 chr4 30375869 30375900 -171952447 + AT_rich Low_complexity Low_complexity 1 31 0 354 372 25 15 chr4 30375930 30376126 -171952221 - MIR SINE MIR -58 204 7 21 0 0 0 chr4 30376170 30376191 -171952156 + AT_rich Low_complexity Low_complexity 1 21 0 198 301 39 48 chr4 30376217 30376320 -171952027 - MIR SINE MIR -48 214 113 225 163 0 0 chr4 30376610 30376659 -171951688 + (CA)n Simple_repeat Simple_repeat 2 50 0 455 320 7 0 chr4 30376950 30377097 -171951250 - L3 LINE CR1 -154 1423 1276 2355 35 0 3 chr4 30377421 30377705 -171950642 + L1PA3 LINE L1 5870 6152 -3 636 230 69 39 chr4 30377865 30378069 -171950278 - MER76 LTR ERV 0 688 479 383 254 6 95 chr4 30378085 30378254 -171950093 + MLT1H LTR MaLR 394 547 -2 2175 121 0 0 chr4 30378442 30378749 -171949598 - AluSg SINE Alu -3 307 1 294 223 170 0 chr4 30379538 30379632 -171948715 + L2 LINE L2 3199 3308 -5 309 222 0 33 chr4 30379672 30379762 -171948585 + GA-rich Low_complexity Low_complexity 2 88 0 322 233 0 35 chr4 30380055 30380141 -171948206 + L2 LINE L2 978 1060 -2254 3679 157 42 10 chr4 30380306 30381001 -171947346 - L1MA2 LINE L1 -1 7722 7006 4001 186 38 2 chr4 30381001 30381839 -171946508 - L1MA2 LINE L1 -920 6645 5778 * 8040 181 56 9 chr4 30381832 30384794 -171943553 - L1MA2 LINE L1 -2272 5293 2184 1082 123 12 6 chr4 30434849 30435012 -171893335 + AluJb SINE Alu 136 299 -13 1046 189 55 10 chr4 30435166 30435367 -171892980 + MER1B DNA MER1_type 1 210 -87 404 208 0 14 chr4 30435357 30435429 -171892918 + MER1B DNA MER1_type 259 329 0 * 24 0 0 0 chr4 30435603 30435627 -171892720 + AT_rich Low_complexity Low_complexity 1 24 0 238 315 56 0 chr4 30436514 30436603 -171891744 - MIR SINE MIR -68 140 47 1382 199 119 51 chr4 30436652 30437023 -171891324 + MSTD LTR MaLR 1 396 0 659 111 37 0 chr4 30437349 30437457 -171890890 + MER7A DNA MER2_type 59 168 -178 2135 140 0 0 chr4 30439277 30439577 -171888770 - AluSx SINE Alu -11 301 2 398 244 71 31 chr4 30439602 30439729 -171888618 + L2 LINE L2 3182 3313 0 2439 41 0 0 chr4 30440477 30440770 -171887577 + L1PA3 LINE L1 5860 6152 -3 314 361 47 33 chr4 30441016 30441290 -171887057 + L2 LINE L2 2463 2740 -574 737 182 42 0 chr4 30441298 30441441 -171886906 - MER61E LTR ERV1 -4 565 417 1397 119 0 50 chr4 30441441 30441701 -171886646 - MER61E LTR ERV1 -322 247 1 25 51 0 0 chr4 30443003 30443042 -171885305 + AT_rich Low_complexity Low_complexity 1 39 0 196 266 28 119 chr4 30443455 30443598 -171884749 - L2 LINE L2 -533 2781 2652 597 216 49 31 chr4 30443728 30443890 -171884457 - MER2 DNA MER2_type 0 345 181 228 111 0 0 chr4 30444204 30444240 -171884107 + (TG)n Simple_repeat Simple_repeat 2 37 0 551 239 33 49 chr4 30444473 30444657 -171883690 + LTR33 LTR ERVL 341 521 0 180 77 0 0 chr4 30444700 30444726 -171883621 + (TA)n Simple_repeat Simple_repeat 1 26 0 195 42 0 0 chr4 30446226 30446250 -171882097 + (A)n Simple_repeat Simple_repeat 1 24 0 1619 237 136 34 chr4 30446475 30447028 -171881319 + MLT1E2 LTR MaLR 18 626 0 192 182 0 0 chr4 30447089 30447133 -171881214 + T-rich Low_complexity Low_complexity 3 46 0 2284 106 0 0 chr4 30447272 30447583 -171880764 - AluY SINE Alu 0 311 1 1918 194 43 61 chr4 30447930 30448436 -171879911 - MLT1D LTR MaLR -8 497 1 334 322 114 14 chr4 30448442 30448665 -171879682 + MIR SINE MIR 20 262 0 21 0 0 0 chr4 30448895 30448916 -171879431 + AT_rich Low_complexity Low_complexity 1 21 0 1805 209 91 9 chr4 30448984 30449414 -171878933 - MLT1C LTR MaLR 0 467 3 8360 208 24 66 chr4 30449620 30450300 -171878047 + L1P3 LINE L1 623 1330 -5131 180 97 0 0 chr4 30450300 30450331 -171878016 + (CAA)n Simple_repeat Simple_repeat 2 32 0 8360 208 24 66 chr4 30450331 30452193 -171876154 + L1P3 LINE L1 1330 3072 -3389 478 82 10 41 chr4 30452294 30452392 -171875955 + (TCC)n Simple_repeat Simple_repeat 3 97 0 578 271 96 118 chr4 30452395 30452524 -171875823 + LTR38B LTR ERV1 42 172 -418 2029 110 0 71 chr4 30452524 30452659 -171875688 + AluY SINE Alu 1 144 -167 2323 78 0 31 chr4 30452659 30452979 -171875368 + AluY SINE Alu 1 310 -1 2029 110 0 71 chr4 30452979 30453169 -171875178 + AluY SINE Alu 144 303 -8 578 271 96 118 chr4 30453169 30453334 -171875013 + LTR38B LTR ERV1 172 339 -251 2518 72 0 0 chr4 30453334 30453639 -171874708 + AluY SINE Alu 5 309 -2 578 271 96 118 chr4 30453639 30453876 -171874471 + LTR38B LTR ERV1 339 590 0 180 0 0 0 chr4 30453990 30454010 -171874337 + (T)n Simple_repeat Simple_repeat 1 20 0 591 92 0 0 chr4 30454354 30454441 -171873906 + (TA)n Simple_repeat Simple_repeat 2 88 0 1231 217 13 107 chr4 30454532 30454924 -171873423 + MLT1A1 LTR MaLR 1 355 -10 1057 281 19 59 chr4 30455021 30455445 -171872902 - MER92B LTR ERV1 -4 632 226 596 264 5 26 chr4 30458103 30458296 -171870051 - MLT1D LTR MaLR -2 503 315 * 787 246 110 92 chr4 30458287 30458580 -171869767 - MLT1E2 LTR MaLR -229 397 94 1674 176 39 59 chr4 30458580 30459018 -171869329 + MSTB1 LTR MaLR 4 432 0 787 246 110 92 chr4 30459018 30459114 -171869233 - MLT1E2 LTR MaLR -532 94 1 2069 185 12 10 chr4 30459190 30459590 -171868757 - MLT2D LTR ERVL -13 401 1 332 288 0 0 chr4 30459647 30459727 -171868620 - MIR SINE MIR -101 161 82 336 381 37 9 chr4 30460068 30460283 -171868064 - LTR16C LTR ERVL 0 491 271 973 225 66 93 chr4 30460702 30460960 -171867387 - MLT1D LTR MaLR -2 503 215 1277 128 74 8 chr4 30461034 30461291 -171867056 - L1MA8 LINE L1 0 6291 6018 21 36 0 0 chr4 30461422 30461450 -171866897 + AT_rich Low_complexity Low_complexity 1 28 0 1450 241 67 75 chr4 30461747 30462291 -171866056 + MER77 LTR ERV1 89 602 -3 229 240 64 123 chr4 30462657 30462861 -171865486 + MLT1H LTR MaLR 229 420 -129 23 33 0 0 chr4 30463253 30463283 -171865064 + AT_rich Low_complexity Low_complexity 1 30 0 1606 180 41 51 chr4 30463521 30463915 -171864432 + MLT1B LTR MaLR 1 390 0 38 0 0 0 chr4 30464165 30464203 -171864144 + AT_rich Low_complexity Low_complexity 1 38 0 1124 204 25 51 chr4 30464971 30465246 -171863101 - MSTD LTR MaLR 0 396 129 615 95 0 38 chr4 30465246 30465351 -171862996 - L1MA2 LINE L1 -157 6147 6047 308 196 0 0 chr4 30465351 30465407 -171862940 - MSTD LTR MaLR -372 56 1 26 64 0 0 chr4 30466300 30466347 -171862000 + AT_rich Low_complexity Low_complexity 1 47 0 352 354 6 0 chr4 30467025 30467186 -171861161 - L1ME LINE L1 -524 5646 5485 4930 72 1 3 chr4 30467223 30467874 -171860473 + L1PA8 LINE L1 5523 6172 0 412 161 11 21 chr4 30467903 30467996 -171860351 - L1MA4A LINE L1 -5 6298 6207 12252 118 14 4 chr4 30468820 30470748 -171857599 - L1P LINE L1 -1453 4693 2747 2414 125 31 19 chr4 30470748 30470796 -171857551 + L1PB1 LINE L1 5732 5778 -373 396 79 13 26 chr4 30470796 30470872 -171857475 + (TA)n Simple_repeat Simple_repeat 2 76 0 2414 125 31 19 chr4 30470872 30471235 -171857112 + L1PB1 LINE L1 5778 6151 0 28 0 0 0 chr4 30471931 30471959 -171856388 + AT_rich Low_complexity Low_complexity 1 28 0 226 337 0 0 chr4 30472715 30472804 -171855543 - L1MC4 LINE L1 -1341 6701 6613 203 152 22 0 chr4 30472812 30472858 -171855489 + (TA)n Simple_repeat Simple_repeat 1 47 0 255 173 0 0 chr4 30472915 30472967 -171855380 + (TA)n Simple_repeat Simple_repeat 1 52 0 208 139 0 0 chr4 30474592 30474628 -171853719 + (CAAA)n Simple_repeat Simple_repeat 4 39 0 2514 143 61 15 chr4 30474799 30475374 -171852973 + MER4E LTR ERV1 1 766 0 839 172 0 0 chr4 30475606 30475751 -171852596 + L1PBa LINE L1 1 145 -6718 5509 122 206 25 chr4 30475897 30476967 -171851380 + L1PBa LINE L1 636 1899 -4964 583 300 39 46 chr4 30477309 30477569 -171850778 + MIR SINE MIR 2 259 -3 332 221 105 0 chr4 30477594 30477680 -171850667 - MSTB1 LTR MaLR 0 432 338 1527 193 129 27 chr4 30477834 30478238 -171850109 - L1MB8 LINE L1 -7 6171 5727 * 3346 261 50 29 chr4 30478231 30479193 -171849154 - L1M4b LINE L1 -5877 982 1 1981 143 3 7 chr4 30479198 30479506 -171848841 + AluSx SINE Alu 5 311 -1 370 176 11 11 chr4 30479506 30479597 -171848750 + GA-rich Low_complexity Low_complexity 2 92 0 267 308 149 0 chr4 30480773 30480880 -171847467 + MIR SINE MIR 20 142 -66 450 53 0 0 chr4 30481034 30481091 -171847256 + (TG)n Simple_repeat Simple_repeat 2 58 0 2237 81 0 34 chr4 30482329 30482649 -171845698 + AluSc SINE Alu 1 309 0 202 216 20 0 chr4 30482898 30482949 -171845398 + (CAAG)n Simple_repeat Simple_repeat 1 52 0 1822 116 36 11 chr4 30484139 30484416 -171843931 + AluSx SINE Alu 1 284 -28 228 67 0 0 chr4 30484416 30484446 -171843901 + (CA)n Simple_repeat Simple_repeat 2 31 0 22 80 0 0 chr4 30485622 30485672 -171842675 + AT_rich Low_complexity Low_complexity 1 50 0 2234 93 0 3 chr4 30485811 30486113 -171842234 - AluY SINE Alu -10 301 1 33 0 0 0 chr4 30486226 30486259 -171842088 + AT_rich Low_complexity Low_complexity 1 33 0 564 308 98 44 chr4 30488400 30489056 -171839291 - L2 LINE L2 0 3313 2529 452 294 62 23 chr4 30490339 30490516 -171837831 - MIR SINE MIR -75 187 4 455 333 69 17 chr4 30493865 30494096 -171834251 + MIR SINE MIR 20 262 0 1118 401 39 40 chr4 30494490 30495034 -171833313 + MLT2B3 LTR ERVL 1 543 -11 2375 151 55 5 chr4 30495611 30496015 -171832332 + MER61C LTR ERV1 1 424 -10 1520 219 121 88 chr4 30496520 30497222 -171831125 - MER50 LTR ERV1 0 734 10 2184 110 0 7 chr4 30497474 30497775 -171830572 + AluSx SINE Alu 3 301 -11 23 0 0 0 chr4 30498461 30498484 -171829863 + AT_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chr4 30500980 30501017 -171827330 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr4 30503163 30503185 -171825162 + AT_rich Low_complexity Low_complexity 1 22 0 201 121 0 0 chr4 30503729 30503762 -171824585 + (T)n Simple_repeat Simple_repeat 1 33 0 893 127 12 12 chr4 30503774 30503947 -171824400 + CT-rich Low_complexity Low_complexity 2 174 0 303 318 72 23 chr4 30505350 30506050 -171822297 + L1MC/D LINE L1 4738 5481 -748 28 0 0 0 chr4 30506483 30506511 -171821836 + AT_rich Low_complexity Low_complexity 1 28 0 229 219 14 55 chr4 30506620 30506693 -171821654 + GA-rich Low_complexity Low_complexity 2 71 0 1598 267 125 29 chr4 30507072 30508069 -171820278 + L1ME1 LINE L1 37 1220 -5176 2176 247 47 24 chr4 30508071 30508889 -171819458 - L1M4 LINE L1 -2159 3987 3152 2058 247 55 67 chr4 30508893 30509248 -171819099 + L1ME1 LINE L1 5189 5547 -856 2493 62 0 0 chr4 30509248 30509557 -171818790 + AluY SINE Alu 1 309 -2 2058 247 55 67 chr4 30509557 30510196 -171818151 + L1ME1 LINE L1 5547 6320 -83 843 197 86 105 chr4 30510196 30510547 -171817800 - MER2 DNA MER2_type 0 344 1 2058 247 55 67 chr4 30510547 30510630 -171817717 + L1ME1 LINE L1 6320 6403 0 4725 158 14 54 chr4 30510837 30511486 -171816861 - MER49 LTR ERV1 0 923 324 2256 109 0 3 chr4 30511486 30511789 -171816558 - AluSq SINE Alu -9 304 3 4725 158 14 54 chr4 30511789 30512097 -171816250 - MER49 LTR ERV1 -599 324 5 1686 238 3 8 chr4 30512470 30512827 -171815520 + MLT1A1 LTR MaLR 10 364 -1 21 36 0 0 chr4 30514059 30514087 -171814260 + AT_rich Low_complexity Low_complexity 1 28 0 785 282 21 116 chr4 30514638 30515251 -171813096 + L2 LINE L2 2350 2904 -410 420 291 15 58 chr4 30515537 30515743 -171812604 + L2 LINE L2 3109 3305 -8 482 207 17 35 chr4 30516106 30516222 -171812125 - MER20 DNA MER1_type -105 114 1 319 302 155 8 chr4 30517222 30517351 -171810996 - MLT1I LTR MaLR -39 370 223 401 225 36 65 chr4 30517395 30517533 -171810814 - MLT1I LTR MaLR -275 134 1 255 281 22 45 chr4 30517706 30517795 -171810552 + L2 LINE L2 3227 3313 0 1210 223 41 34 chr4 30517943 30518268 -171810079 - LTR10C LTR ERV1 -57 576 243 182 345 12 0 chr4 30518642 30518726 -171809621 + L2 LINE L2 2191 2275 -1039 233 240 136 16 chr4 30518728 30518853 -171809494 - L1MC3 LINE L1 -1142 6643 6504 290 421 8 21 chr4 30518869 30519109 -171809238 + L2 LINE L2 2424 2660 -654 36 23 0 0 chr4 30519198 30519241 -171809106 + AT_rich Low_complexity Low_complexity 1 43 0 309 51 0 0 chr4 30519374 30519413 -171808934 + (CA)n Simple_repeat Simple_repeat 2 40 0 257 337 12 10 chr4 30519646 30519767 -171808580 - MIR SINE MIR -69 139 37 202 275 121 33 chr4 30521649 30521740 -171806607 - MIR SINE MIR -80 182 84 245 311 54 0 chr4 30521979 30522053 -171806294 - L2 LINE L2 -9 3304 3227 * 330 289 96 13 chr4 30522049 30522205 -171806142 - MIR SINE MIR 0 262 94 1631 168 61 85 chr4 30522205 30522617 -171805730 - MLT2C2 LTR ERVL -62 402 1 375 328 64 0 chr4 30522617 30522742 -171805605 - MIR SINE MIR -116 146 14 186 43 0 0 chr4 30523197 30523220 -171805127 + (TTTTG)n Simple_repeat Simple_repeat 1 23 0 26 30 0 0 chr4 30523554 30523587 -171804760 + AT_rich Low_complexity Low_complexity 1 33 0 2553 55 0 0 chr4 30523850 30524158 -171804189 - AluY SINE Alu -3 308 1 228 372 8 33 chr4 30524598 30524719 -171803628 - MER5A DNA MER1_type -28 161 44 1752 133 91 26 chr4 30524918 30525270 -171803077 - THE1C LTR MaLR 0 375 1 22 35 0 0 chr4 30526723 30526752 -171801595 + AT_rich Low_complexity Low_complexity 1 29 0 33 43 0 0 chr4 30526813 30526860 -171801487 + AT_rich Low_complexity Low_complexity 1 47 0 281 341 104 0 chr4 30527061 30527234 -171801113 + MIR SINE MIR 66 256 -6 24 32 0 0 chr4 30527630 30527661 -171800686 + AT_rich Low_complexity Low_complexity 1 31 0 1822 219 71 7 chr4 30528415 30528854 -171799493 - MLT1C LTR MaLR 0 467 1 210 37 0 0 chr4 30530151 30530178 -171798169 + (TG)n Simple_repeat Simple_repeat 2 28 0 3443 209 57 103 chr4 30530310 30531117 -171797230 - Charlie1a DNA MER1_type -1306 1455 749 1988 116 48 17 chr4 30531117 30531410 -171796937 - AluSq SINE Alu -11 302 1 3443 209 57 103 chr4 30531410 30532123 -171796224 - Charlie1a DNA MER1_type -2012 749 5 246 278 16 48 chr4 30532853 30532979 -171795368 + (TATATG)n Simple_repeat Simple_repeat 5 126 0 293 315 95 68 chr4 30533204 30533614 -171794733 - L2 LINE L2 -9 3304 2884 194 344 75 33 chr4 30533582 30533794 -171794553 - L2 LINE L2 -1357 1957 1737 * 1071 175 34 37 chr4 30533896 30534175 -171794172 + MLT1D LTR MaLR 40 354 -151 212 176 0 20 chr4 30534176 30534227 -171794120 + (ATTTG)n Simple_repeat Simple_repeat 5 54 0 611 324 115 28 chr4 30535838 30536008 -171792339 - L1MC/D LINE L1 -1991 5886 5732 351 44 0 0 chr4 30536008 30536053 -171792294 + (TG)n Simple_repeat Simple_repeat 2 46 0 611 324 115 28 chr4 30536053 30536388 -171791959 - L1MC/D LINE L1 -2145 5732 5337 358 262 124 0 chr4 30536624 30536769 -171791578 - L1MC4 LINE L1 -73 7969 7807 229 300 40 0 chr4 30537006 30537106 -171791241 - L1MC4 LINE L1 -723 7319 7216 192 182 0 0 chr4 30537117 30537161 -171791186 + (CA)n Simple_repeat Simple_repeat 1 44 0 489 287 35 11 chr4 30537236 30537410 -171790937 - L1MC4a LINE L1 -906 6902 6725 3740 144 31 0 chr4 30538314 30538920 -171789427 + MER39B LTR ERV1 1 625 -28 3078 251 53 10 chr4 30539895 30540914 -171787433 - L1MC/D LINE L1 -1665 4550 3488 436 278 12 12 chr4 30540881 30541054 -171787293 - L1M4 LINE L1 -1439 4776 4604 * 1136 263 67 14 chr4 30541162 30541671 -171786676 - L1MC/D LINE L1 -5215 1181 646 359 263 91 29 chr4 30541786 30541961 -171786386 - L1MC/D LINE L1 -6175 221 36 439 276 21 7 chr4 30542301 30542446 -171785901 + MER69 DNA AcHobo 634 780 -1746 247 223 75 21 chr4 30542452 30542546 -171785801 + MER69 DNA AcHobo 1999 2097 -429 1658 199 40 16 chr4 30542552 30542923 -171785424 + MLT1B LTR MaLR 11 390 0 1267 223 95 5 chr4 30542923 30543321 -171785026 + MER69 DNA AcHobo 2093 2526 0 214 315 0 14 chr4 30543426 30543499 -171784848 + MIR SINE MIR 149 220 -42 1567 170 21 7 chr4 30543612 30543895 -171784452 - Tigger3(Golem) DNA MER2_type -3 3026 2740 1443 216 3 7 chr4 30543895 30544177 -171784170 + AluJo SINE Alu 1 281 -31 28 0 0 0 chr4 30544181 30544209 -171784138 + AT_rich Low_complexity Low_complexity 1 28 0 453 247 0 0 chr4 30544271 30544352 -171783995 - Tigger3(Golem) DNA MER2_type -2947 82 2 1183 197 17 133 chr4 30544452 30544864 -171783483 + MLT1A1 LTR MaLR 1 364 -1 281 299 160 14 chr4 30545988 30546132 -171782215 + MIR SINE MIR 66 230 -32 422 258 219 19 chr4 30547146 30547301 -171781046 - MER5A DNA MER1_type 0 189 4 498 256 0 0 chr4 30547398 30547638 -171780709 + (CA)n Simple_repeat Simple_repeat 1 240 0 35 83 0 0 chr4 30547954 30548038 -171780309 + AT_rich Low_complexity Low_complexity 1 84 0 24 32 0 0 chr4 30548961 30548992 -171779355 + AT_rich Low_complexity Low_complexity 1 31 0 1148 83 24 0 chr4 30549382 30549550 -171778797 - L1PA13 LINE L1 0 6163 5992 1247 102 33 0 chr4 30549650 30549853 -171778494 - L1PA13 LINE L1 -178 5953 5732 547 135 0 0 chr4 30549853 30549927 -171778420 - LTR12 LTR ERV1 -19 695 622 286 206 37 56 chr4 30549927 30550035 -171778312 - LTR30 LTR ERV1 -94 613 375 1543 115 112 49 chr4 30550035 30550384 -171777963 - LTR12 LTR ERV1 -417 2021 57 253 231 0 0 chr4 30550384 30550436 -171777911 - LTR30 LTR ERV1 -670 52 1 4543 112 2 2 chr4 30550436 30551079 -171777268 - HERV9 LTR ERV1 0 8399 7757 1808 85 19 18 chr4 30551074 30551476 -171776871 - Harlequin LTR ERV1 -5176 1720 1275 * 1929 116 39 9 chr4 30551463 30551799 -171776548 - Harlequin LTR ERV1 -7577 1049 704 33802 103 19 12 chr4 30551817 30556696 -171771651 - Harlequin LTR ERV1 -3425 4974 59 688 120 56 78 chr4 30556675 30556817 -171771530 - pTR5 LTR ERV1 -1994 444 306 * 288 252 58 0 chr4 30556818 30556921 -171771426 - LTR30 LTR ERV1 -70 652 544 1497 104 105 52 chr4 30556921 30557270 -171771077 - LTR12 LTR ERV1 -437 1794 57 230 260 0 0 chr4 30557271 30557321 -171771026 - LTR30 LTR ERV1 -671 51 2 1960 185 40 32 chr4 30557323 30557869 -171770478 + MLT2A2 LTR ERVL 1 554 0 2905 103 2 2 chr4 30557869 30558285 -171770062 - L1P4 LINE L1 -407 5767 5352 21 57 0 0 chr4 30558285 30558320 -171770027 + AT_rich Low_complexity Low_complexity 1 35 0 351 0 0 0 chr4 30558509 30558548 -171769799 + (CA)n Simple_repeat Simple_repeat 1 39 0 25 51 0 0 chr4 30558742 30558781 -171769566 + AT_rich Low_complexity Low_complexity 1 39 0 1729 51 0 5 chr4 30558880 30559129 -171769218 - L1PA3 LINE L1 0 6155 5921 5763 119 6 1 chr4 30559154 30560749 -171767598 - L1PA10 LINE L1 -5 6163 4561 1296 129 0 0 chr4 30560749 30560943 -171767404 + L1P LINE L1 3556 3749 -2397 1172 224 104 31 chr4 30560932 30561347 -171767000 + L1MCa LINE L1 1465 1909 -4517 * 1260 282 28 25 chr4 30561361 30561889 -171766458 + L1MCa LINE L1 3454 3983 -2443 * 5564 182 5 9 chr4 30561886 30563000 -171765347 + L1P LINE L1 4140 5249 -897 929 182 0 0 chr4 30563004 30563185 -171765162 + L1P LINE L1 4368 4548 -1598 527 117 126 0 chr4 30563180 30563283 -171765064 - L1P LINE L1 -799 5369 5254 * 970 164 12 0 chr4 30563291 30563456 -171764891 - L1P LINE L1 -2015 4131 3965 250 299 28 47 chr4 30563759 30563866 -171764481 + L2 LINE L2 3195 3299 -14 490 204 31 31 chr4 30564223 30564385 -171763962 + L1MA7 LINE L1 6113 6274 -17 189 0 0 0 chr4 30565088 30565109 -171763238 + (TG)n Simple_repeat Simple_repeat 1 21 0 5345 221 20 20 chr4 30565132 30565620 -171762727 - L1MC1 LINE L1 -39 6574 6087 1961 140 7 0 chr4 30565620 30565928 -171762419 - AluSx SINE Alu -2 310 1 5345 221 20 20 chr4 30565928 30567900 -171760447 - L1MC1 LINE L1 -526 6087 3986 3062 193 35 80 chr4 30567904 30568713 -171759634 - L1MC1 LINE L1 -5610 816 45 255 312 43 11 chr4 30568743 30568836 -171759511 + L2 LINE L2 2697 2792 -522 31 26 0 0 chr4 30569150 30569188 -171759159 + AT_rich Low_complexity Low_complexity 1 38 0 1771 141 176 3 chr4 30569340 30569703 -171758644 + MSTA LTR MaLR 3 428 0 297 313 0 0 chr4 30570874 30570957 -171757390 + L2 LINE L2 3227 3309 -4 3440 111 4 22 chr4 30572807 30573170 -171755177 - L1PB1 LINE L1 0 7570 7202 2358 124 31 3 chr4 30573170 30573524 -171754823 - THE1B LTR MaLR 0 364 1 282 56 0 0 chr4 30573524 30573560 -171754787 + (TG)n Simple_repeat Simple_repeat 2 37 0 3440 111 4 22 chr4 30573560 30573736 -171754611 - L1PB1 LINE L1 -366 7204 7040 1958 186 87 24 chr4 30573736 30574187 -171754160 - LTR2B LTR ERV1 -11 479 1 13203 228 29 10 chr4 30574187 30576631 -171751716 - L1PB1 LINE L1 -517 7053 4656 198 0 0 0 chr4 30576631 30576653 -171751694 + (TTTAA)n Simple_repeat Simple_repeat 4 25 0 13203 228 29 10 chr4 30576653 30576666 -171751681 - L1PB1 LINE L1 -2914 4656 4645 261 0 0 0 chr4 30576666 30576695 -171751652 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 13203 228 29 10 chr4 30576695 30578448 -171749899 - L1PB1 LINE L1 -2925 4645 2373 313 83 42 0 chr4 30578448 30578496 -171749851 - LTR2B LTR ERV1 0 490 441 191 340 10 50 chr4 30578672 30578772 -171749575 - L2 LINE L2 -43 3229 3134 2109 118 0 3 chr4 30578847 30579151 -171749196 - AluSg SINE Alu -6 304 2 339 321 29 0 chr4 30579628 30579765 -171748582 + GA-rich Low_complexity Low_complexity 5 145 0 736 172 0 15 chr4 30579849 30579983 -171748364 + FLAM_C SINE Alu 2 133 0 48 53 0 0 chr4 30580203 30580279 -171748068 + AT_rich Low_complexity Low_complexity 1 76 0 963 179 0 68 chr4 30580495 30580730 -171747617 - MER20 DNA MER1_type 0 219 1 322 330 89 51 chr4 30582470 30582706 -171745641 - L3 LINE CR1 -363 1214 970 30 0 0 0 chr4 30582826 30582856 -171745491 + AT_rich Low_complexity Low_complexity 1 30 0 458 264 105 68 chr4 30583115 30583468 -171744879 - MLT1K LTR MaLR -17 571 206 898 194 12 0 chr4 30583742 30583912 -171744435 + MSTC LTR MaLR 253 424 -4 450 353 42 6 chr4 30583917 30584084 -171744263 - MER5B DNA MER1_type 0 178 6 962 233 34 0 chr4 30584328 30584534 -171743813 + MLT1A1 LTR MaLR 115 327 -38 214 374 10 0 chr4 30586000 30586099 -171742248 - L2 LINE L2 -559 2755 2656 27 73 0 0 chr4 30586169 30586224 -171742123 + AT_rich Low_complexity Low_complexity 1 55 0 31 26 0 0 chr4 30586321 30586359 -171741988 + AT_rich Low_complexity Low_complexity 1 38 0 1116 96 6 6 chr4 30586999 30587155 -171741192 + AluSg SINE Alu 1 156 -154 1674 202 19 46 chr4 30587278 30587645 -171740702 - MER67D LTR ERV1 -157 357 1 329 277 31 23 chr4 30587684 30587814 -171740533 + L1 LINE L1 3651 3781 -2365 266 259 17 0 chr4 30587934 30587992 -171740355 - MIR SINE MIR -155 107 49 324 0 0 0 chr4 30588187 30588223 -171740124 + (TG)n Simple_repeat Simple_repeat 2 37 0 392 322 59 0 chr4 30588324 30588476 -171739871 + L3 LINE CR1 1261 1421 -156 481 245 54 38 chr4 30589003 30589187 -171739160 - LTR33 LTR ERVL 0 521 335 234 172 207 0 chr4 30589289 30589376 -171738971 - MER53 DNA DNA -82 107 3 472 225 87 11 chr4 30589415 30589633 -171738714 - MER5C DNA MER1_type -37 287 4 258 198 83 42 chr4 30589693 30589789 -171738558 - LTR33 LTR ERVL -306 215 116 248 383 21 28 chr4 30590788 30590929 -171737418 - MER5A DNA MER1_type -1 188 49 2018 107 31 17 chr4 30591288 30591578 -171736769 - AluSg SINE Alu -16 294 1 328 318 81 31 chr4 30592382 30592605 -171735742 + MIR SINE MIR 1 234 -28 3472 210 8 47 chr4 30593251 30594172 -171734175 - L1 LINE L1 -1169 4977 4093 * 4440 193 15 20 chr4 30594169 30595390 -171732957 + L1PB4 LINE L1 4939 6156 0 224 167 21 0 chr4 30596186 30596234 -171732113 + (TAAG)n Simple_repeat Simple_repeat 3 51 0 335 315 161 7 chr4 30596709 30596858 -171731489 - L2 LINE L2 -762 2552 2381 515 327 43 43 chr4 30596921 30597248 -171731099 - L2 LINE L2 -1151 2163 1837 1142 321 97 54 chr4 30597798 30598752 -171729595 + L2 LINE L2 319 1336 -1978 3132 108 18 0 chr4 30598752 30599197 -171729150 - MLT2A2 LTR ERVL 0 453 1 1142 321 97 54 chr4 30599197 30599455 -171728892 + L2 LINE L2 1336 1582 -1732 442 360 222 21 chr4 30600031 30600964 -171727383 + L2 LINE L2 1855 2974 -340 500 344 45 29 chr4 30601033 30601411 -171726936 - L1MEc LINE L1 -5974 422 39 255 152 0 0 chr4 30601938 30601984 -171726363 + (TG)n Simple_repeat Simple_repeat 2 47 0 2064 115 44 0 chr4 30603087 30603383 -171724964 + AluSx SINE Alu 1 309 -3 551 333 76 55 chr4 30604960 30605647 -171722700 - L1 LINE L1 -2961 3185 2485 369 322 148 22 chr4 30605708 30605978 -171722369 - L2 LINE L2 -469 2845 2542 22 0 0 0 chr4 30606568 30606590 -171721757 + AT_rich Low_complexity Low_complexity 1 22 0 259 244 67 104 chr4 30606610 30606774 -171721573 - MIR SINE MIR 0 262 105 537 58 0 0 chr4 30606864 30606933 -171721414 + (TTCC)n Simple_repeat Simple_repeat 2 70 0 566 201 151 25 chr4 30606933 30607092 -171721255 - AluJb SINE Alu -29 283 105 299 155 17 0 chr4 30607181 30607239 -171721108 + AluJb SINE Alu 69 127 -175 333 214 0 2 chr4 30607251 30607315 -171721032 - AluS SINE Alu -245 58 2 21 0 0 0 chr4 30607401 30607422 -171720925 + AT_rich Low_complexity Low_complexity 1 21 0 1037 318 46 51 chr4 30607773 30608464 -171719883 - HERVL LTR ERVL -1042 3954 3335 260 246 15 0 chr4 30608680 30608745 -171719602 - MLT1E2 LTR MaLR -2 624 559 409 135 0 0 chr4 30608751 30608825 -171719522 - L1MA4A LINE L1 -4 6299 6226 321 238 8 127 chr4 30608996 30609122 -171719225 - MLT1D-int LTR MaLR -710 661 551 470 99 0 0 chr4 30609122 30609193 -171719154 - Alu SINE Alu 0 310 240 1797 288 5 14 chr4 30609193 30609519 -171718828 - MLT1D-int LTR MaLR -817 554 234 1164 207 94 22 chr4 30609519 30609838 -171718509 + MER2 DNA MER2_type 3 344 0 1797 288 5 14 chr4 30609838 30610070 -171718277 - MLT1D-int LTR MaLR -1137 234 1 1297 267 50 40 chr4 30610075 30610570 -171717777 - MLT1D LTR MaLR -4 501 2 822 148 5 0 chr4 30610674 30610815 -171717532 + THE1C LTR MaLR 242 375 0 * 1803 194 3 22 chr4 30610815 30611170 -171717177 + MLT1B LTR MaLR 43 390 0 2358 101 0 3 chr4 30611394 30611701 -171716646 + AluSg SINE Alu 1 306 -4 180 0 0 0 chr4 30611702 30611722 -171716625 + (TA)n Simple_repeat Simple_repeat 1 20 0 25 0 0 0 chr4 30613005 30613030 -171715317 + AT_rich Low_complexity Low_complexity 1 25 0 1859 312 82 54 chr4 30614361 30615332 -171713015 - L2 LINE L2 -339 2975 1977 1114 194 237 48 chr4 30615346 30615495 -171712852 + L1MC3 LINE L1 7307 7427 -358 1927 121 4 0 chr4 30615495 30615760 -171712587 + AluSx SINE Alu 1 266 -46 1114 194 237 48 chr4 30615760 30615838 -171712509 + L1MC3 LINE L1 7427 7489 -296 2030 66 52 22 chr4 30615838 30616142 -171712205 + AluY SINE Alu 1 312 0 1114 194 237 48 chr4 30616142 30616309 -171712038 + L1MC3 LINE L1 7489 7778 -7 238 298 50 14 chr4 30616576 30616717 -171711630 - MLT1I LTR MaLR -35 374 229 2340 148 46 19 chr4 30616948 30617360 -171710987 + MSTA LTR MaLR 4 426 -2 336 294 72 7 chr4 30617774 30617927 -171710420 + L1M4c LINE L1 848 1010 -5374 313 271 24 0 chr4 30617945 30618030 -171710317 - L1MEd LINE L1 -5107 1098 1012 509 287 54 40 chr4 30618130 30618426 -171709921 + L1ME3A LINE L1 5866 6165 -5 1671 209 3 0 chr4 30618625 30618982 -171709365 - AluJo SINE Alu 0 360 3 373 291 90 26 chr4 30619009 30619393 -171708954 - L1MEd LINE L1 -4880 1335 902 340 263 46 84 chr4 30619408 30619670 -171708677 - L1MEd LINE L1 -5290 915 664 449 363 15 15 chr4 30620004 30620277 -171708070 - L1MEd LINE L1 -6011 385 113 201 108 0 0 chr4 30620578 30620615 -171707732 + (ATG)n Simple_repeat Simple_repeat 3 39 0 320 333 97 28 chr4 30620647 30620791 -171707556 - MIR SINE MIR -49 213 60 2267 69 0 10 chr4 30621059 30621347 -171707000 + AluY SINE Alu 13 297 -14 23 0 0 0 chr4 30621363 30621386 -171706961 + AT_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chr4 30622595 30622632 -171705715 + AT_rich Low_complexity Low_complexity 1 37 0 21 57 0 0 chr4 30622823 30622858 -171705489 + AT_rich Low_complexity Low_complexity 1 35 0 196 299 104 0 chr4 30623009 30623076 -171705271 + L3 LINE CR1 390 463 -1114 3609 152 67 57 chr4 30623472 30624249 -171704098 - LTR1 LTR ERV1 0 785 1 779 126 5 126 chr4 30624961 30625168 -171703179 + MER53 DNA DNA 8 189 0 401 301 26 20 chr4 30625170 30625323 -171703024 - MIR SINE MIR -47 215 62 422 78 0 0 chr4 30625522 30625586 -171702761 - Alu SINE Alu -3 308 245 1080 45 0 15 chr4 30625590 30625724 -171702623 - AluY SINE Alu -179 132 1 206 345 71 24 chr4 30625764 30625932 -171702415 + L2 LINE L2 2691 2866 -448 2425 212 16 43 chr4 30626140 30626787 -171701560 - L1MA8 LINE L1 -870 5276 4648 4606 159 19 21 chr4 30626801 30626990 -171701357 + L1MA8 LINE L1 5254 5442 -849 1939 149 0 0 chr4 30626990 30627266 -171701081 + AluSx SINE Alu 1 276 -36 306 0 0 0 chr4 30627273 30627307 -171701040 + (CA)n Simple_repeat Simple_repeat 2 35 0 4606 159 19 21 chr4 30627307 30627966 -171700381 + L1MA8 LINE L1 5448 6108 -183 * 14315 92 6 1 chr4 30627964 30629907 -171698440 + L1PA5 LINE L1 55 2008 -4138 7575 89 6 21 chr4 30629909 30630996 -171697351 - MER11C LTR ERVK 0 1071 1 21307 56 0 1 chr4 30630996 30634526 -171693821 + L1PA5 LINE L1 2599 6148 -6 621 136 131 28 chr4 30634526 30634702 -171693645 + L1MA7 LINE L1 6092 6285 -6 27 49 0 0 chr4 30635282 30635323 -171693024 + AT_rich Low_complexity Low_complexity 1 41 0 187 182 0 36 chr4 30635589 30635644 -171692703 + CT-rich Low_complexity Low_complexity 2 54 0 2233 108 0 3 chr4 30635749 30636046 -171692301 - AluSx SINE Alu -16 296 1 32 43 0 0 chr4 30636329 30636375 -171691972 + AT_rich Low_complexity Low_complexity 1 46 0 225 378 18 9 chr4 30636565 30636676 -171691671 - MIR3 SINE MIR -46 162 51 254 260 0 0 chr4 30636885 30636935 -171691412 + MER21B LTR ERV1 47 96 -767 2038 122 0 38 chr4 30636964 30637284 -171691063 - AluSx SINE Alu -4 308 1 917 294 76 35 chr4 30637298 30637877 -171690470 + MER21B LTR ERV1 100 756 -107 1875 152 25 0 chr4 30637915 30638191 -171690156 + AluSx SINE Alu 1 283 -29 285 29 0 0 chr4 30638191 30638225 -171690122 + (CA)n Simple_repeat Simple_repeat 2 35 0 445 250 18 36 chr4 30638302 30638470 -171689877 + (TA)n Simple_repeat Simple_repeat 2 166 0 419 200 0 0 chr4 30638504 30638594 -171689753 + MER53 DNA DNA 100 189 0 262 343 65 57 chr4 30639357 30639456 -171688891 - MIR SINE MIR -7 255 158 1429 195 29 49 chr4 30639456 30639800 -171688547 - MER1B DNA MER1_type 0 337 1 262 343 65 57 chr4 30639800 30639948 -171688399 - MIR SINE MIR -104 158 6 26 50 0 0 chr4 30640278 30640318 -171688029 + AT_rich Low_complexity Low_complexity 1 40 0 256 236 34 45 chr4 30640564 30640653 -171687694 - MIR SINE MIR 0 262 175 569 279 20 0 chr4 30641502 30641649 -171686698 + MER4A-int LTR ERV1 1951 2100 -4231 610 229 45 76 chr4 30641663 30642085 -171686262 + MER4A-int LTR ERV1 1356 3129 -263 2088 169 84 22 chr4 30642438 30642622 -171685725 - MSTA LTR MaLR 0 428 257 2524 111 3 31 chr4 30642622 30642843 -171685504 - THE1C LTR MaLR 0 375 168 2202 113 3 0 chr4 30642843 30643136 -171685211 + AluSg SINE Alu 1 294 -16 2524 111 3 31 chr4 30643136 30643300 -171685047 - THE1C LTR MaLR -207 168 1 2088 169 84 22 chr4 30643300 30643518 -171684829 - MSTA LTR MaLR -171 257 1 1366 209 77 93 chr4 30643522 30644573 -171683774 + MER4A-int LTR ERV1 2099 3620 -1395 2337 212 42 14 chr4 30644583 30645046 -171683301 + L1 LINE L1 4682 5130 -1036 1890 112 11 0 chr4 30645046 30645315 -171683032 + AluY SINE Alu 37 308 -3 2337 212 42 14 chr4 30645315 30645566 -171682781 + L1 LINE L1 5130 5419 -747 4066 143 26 0 chr4 30645566 30646229 -171682118 + L1PA16 LINE L1 5487 6166 0 310 255 11 0 chr4 30646236 30646330 -171682017 + (TA)n Simple_repeat Simple_repeat 1 95 0 7542 165 22 1 chr4 30646424 30647751 -171680596 - Tigger1 DNA MER2_type -4 2414 1060 4978 193 28 16 chr4 30647754 30649781 -171678566 - L1MA4A LINE L1 0 7365 5316 5755 226 28 48 chr4 30649882 30651740 -171676607 - L1MA4A LINE L1 -2214 4994 3176 369 0 0 0 chr4 30651771 30651812 -171676535 + (TC)n Simple_repeat Simple_repeat 2 42 0 * 372 103 0 0 chr4 30651811 30651869 -171676478 + (TA)n Simple_repeat Simple_repeat 1 58 0 4725 207 35 176 chr4 30651869 30654242 -171674105 - L1MA4A LINE L1 -4809 2400 1 552 104 198 0 chr4 30654248 30654354 -171673993 - Tigger1 DNA MER2_type -1344 1074 948 * 4378 165 34 8 chr4 30654348 30655116 -171673231 - Tigger1 DNA MER2_type -1630 788 1 5595 219 48 43 chr4 30655119 30656852 -171671495 + MER4A-int LTR ERV1 4589 6330 -1 1880 113 9 48 chr4 30656941 30657276 -171671071 + MER4A LTR ERV1 37 358 -306 2145 126 3 3 chr4 30657313 30657623 -171670724 + MER4A LTR ERV1 355 664 0 546 168 0 37 chr4 30657627 30657734 -171670613 + LTR49 LTR ERV1 39 141 -454 452 143 26 13 chr4 30657757 30657830 -171670517 + MER84 LTR ERVI 1 74 -433 1773 146 71 7 chr4 30657830 30658139 -171670208 + MER84 LTR ERVI 2 330 -177 187 151 0 57 chr4 30659721 30659774 -171668573 + GA-rich Low_complexity Low_complexity 5 54 0 180 0 0 0 chr4 30660011 30660031 -171668316 + (TAA)n Simple_repeat Simple_repeat 1 20 0 1060 224 35 52 chr4 30660517 30660861 -171667486 + MER58B DNA MER1_type 1 338 -3 309 381 12 6 chr4 30660898 30661066 -171667281 + L2 LINE L2 2619 2787 -527 480 35 0 0 chr4 30661194 30661252 -171667095 + (A)n Simple_repeat Simple_repeat 1 58 0 180 0 0 0 chr4 30661668 30661688 -171666659 + (TAA)n Simple_repeat Simple_repeat 1 20 0 1060 224 35 52 chr4 30662174 30662518 -171665829 + MER58B DNA MER1_type 1 338 -3 309 381 12 6 chr4 30662555 30662723 -171665624 + L2 LINE L2 2619 2787 -527 318 106 0 0 chr4 30662851 30662898 -171665449 + (A)n Simple_repeat Simple_repeat 1 47 0 216 331 153 25 chr4 30663231 30663388 -171664959 - L2 LINE L2 -189 3083 2907 452 215 90 123 chr4 30663403 30663639 -171664708 - LTR48 LTR ERV1 -30 757 515 1825 143 42 68 chr4 30663639 30664024 -171664323 - THE1C LTR MaLR 0 375 1 452 215 90 123 chr4 30664024 30664215 -171664132 - LTR48 LTR ERV1 -272 515 157 766 167 71 54 chr4 30664223 30664391 -171663956 - MER84 LTR ERVI -9 498 328 296 95 0 0 chr4 30664408 30664450 -171663897 + MADE1 DNA Mariner 1 42 -38 271 358 142 4 chr4 30664813 30665073 -171663274 + L2 LINE L2 2420 2715 -599 1357 67 0 0 chr4 30665080 30665260 -171663087 + L1PA13 LINE L1 5984 6163 0 198 292 0 15 chr4 30665740 30665805 -171662542 + L2 LINE L2 3248 3311 -2 267 243 0 72 chr4 30667442 30667553 -171660794 + HAL1 LINE L1 95 197 -2310 460 336 141 46 chr4 30667683 30668115 -171660232 + HAL1 LINE L1 446 918 -1589 277 258 90 69 chr4 30668162 30668303 -171660044 + HAL1 LINE L1 897 1034 -1473 1785 160 0 55 chr4 30668303 30668606 -171659741 + AluSx SINE Alu 1 286 -26 390 21 0 0 chr4 30668606 30668653 -171659694 + (CATA)n Simple_repeat Simple_repeat 2 48 0 1785 160 0 55 chr4 30668653 30668674 -171659673 + AluSx SINE Alu 286 307 -5 277 258 90 69 chr4 30668674 30669012 -171659335 + HAL1 LINE L1 1034 1386 -1121 416 320 56 32 chr4 30669165 30669415 -171658932 + HAL1 LINE L1 1627 1882 -625 2548 171 18 134 chr4 30669475 30670126 -171658221 - MER70B LTR ERVL -2 576 1 546 298 0 7 chr4 30670227 30670368 -171657979 - MIR SINE MIR -105 157 18 257 279 81 35 chr4 30670365 30670517 -171657830 + MIR SINE MIR 5 161 -68 * 330 331 100 25 chr4 30673431 30673591 -171654756 + MIR SINE MIR 2 173 -89 237 316 86 0 chr4 30673712 30673829 -171654518 - MIR SINE MIR -79 183 57 2265 128 0 0 chr4 30674216 30674529 -171653818 - AluSq SINE Alu 0 313 1 30 45 0 0 chr4 30674997 30675041 -171653306 + AT_rich Low_complexity Low_complexity 1 44 0 191 36 36 0 chr4 30675598 30675626 -171652721 + (CA)n Simple_repeat Simple_repeat 2 30 0 473 111 0 0 chr4 30675907 30675979 -171652368 + AluS SINE Alu 1 72 -239 1965 114 72 7 chr4 30675979 30676286 -171652061 - L1PA11 LINE L1 -101 6073 5747 243 181 0 133 chr4 30676256 30676339 -171652008 - L1P LINE L1 -2887 3259 3188 * 5672 120 15 2 chr4 30676360 30677235 -171651112 - L1PB1 LINE L1 -1 6150 5265 * 8467 184 31 26 chr4 30677218 30678566 -171649781 - L1P LINE L1 -2950 3196 1835 1914 154 4 0 chr4 30678566 30678875 -171649472 + AluSx SINE Alu 1 310 0 8467 184 31 26 chr4 30678875 30679423 -171648924 - L1P LINE L1 -4311 1835 1291 1531 287 91 90 chr4 30679509 30680523 -171647824 + L2 LINE L2 2013 3004 -268 864 287 184 29 chr4 30680588 30681034 -171647313 + LTR41 LTR ERVL 29 543 -230 26 0 0 0 chr4 30681134 30681160 -171647187 + AT_rich Low_complexity Low_complexity 1 26 0 24 67 0 0 chr4 30681448 30681493 -171646854 + AT_rich Low_complexity Low_complexity 1 45 0 189 0 0 0 chr4 30681669 30681690 -171646657 + (T)n Simple_repeat Simple_repeat 1 21 0 1750 217 8 2 chr4 30682601 30683018 -171645329 + MLT2B1 LTR ERVL 1 470 -50 328 64 0 0 chr4 30683018 30683065 -171645282 + MADE1 DNA Mariner 1 47 -33 329 161 0 0 chr4 30683101 30683157 -171645190 + MLT2B1 LTR ERVL 460 515 0 231 100 0 0 chr4 30683673 30683713 -171644634 + L1MA3 LINE L1 6266 6305 0 23 0 0 0 chr4 30683714 30683737 -171644610 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr4 30683861 30683882 -171644465 + AT_rich Low_complexity Low_complexity 1 21 0 215 415 67 12 chr4 30684892 30685056 -171643291 - MIR SINE MIR -70 192 20 340 295 45 27 chr4 30685436 30685548 -171642799 - MIR SINE MIR -60 148 35 233 408 44 64 chr4 30686559 30686966 -171641381 - L2 LINE L2 -7 3265 2867 708 245 42 0 chr4 30687115 30687327 -171641020 - MER33 DNA MER1_type -102 222 2 53 90 0 0 chr4 30687468 30687612 -171640735 + AT_rich Low_complexity Low_complexity 1 144 0 4315 185 32 56 chr4 30687926 30689403 -171638944 + L1MA9 LINE L1 4280 5694 -618 1811 98 0 23 chr4 30689403 30689668 -171638679 + AluY SINE Alu 19 277 -34 4315 185 32 56 chr4 30689668 30690273 -171638074 + L1MA9 LINE L1 5694 6312 0 267 225 0 0 chr4 30690320 30690391 -171637956 + (TA)n Simple_repeat Simple_repeat 2 72 0 2215 97 0 17 chr4 30690391 30690691 -171637656 - AluSx SINE Alu -17 295 1 25 51 0 0 chr4 30690692 30690731 -171637616 + AT_rich Low_complexity Low_complexity 1 39 0 863 178 17 56 chr4 30691369 30691549 -171636798 - FRAM SINE Alu -4 172 1 195 368 16 40 chr4 30691554 30691679 -171636668 - MIR SINE MIR -121 141 20 21 0 0 0 chr4 30691730 30691751 -171636596 + AT_rich Low_complexity Low_complexity 1 21 0 209 267 44 33 chr4 30691790 30691880 -171636467 - L2 LINE L2 -790 2524 2434 189 107 0 0 chr4 30693001 30693029 -171635318 + (GA)n Simple_repeat Simple_repeat 2 29 0 447 19 0 0 chr4 30693033 30693085 -171635262 + (TG)n Simple_repeat Simple_repeat 1 52 0 598 345 110 19 chr4 30694014 30694569 -171633778 - L2 LINE L2 -34 3279 2671 2133 149 13 13 chr4 30694571 30694946 -171633401 + THE1C LTR MaLR 1 375 0 8311 137 16 36 chr4 30694946 30696323 -171632024 + THE1C-int LTR MaLR 1 1349 -231 261 0 0 0 chr4 30696779 30696808 -171631539 + (T)n Simple_repeat Simple_repeat 1 29 0 236 362 29 0 chr4 30698791 30698896 -171629451 + L2 LINE L2 3206 3313 0 1023 233 34 90 chr4 30699002 30699359 -171628988 + MLT1D LTR MaLR 1 337 -168 1514 168 8 19 chr4 30699641 30699903 -171628444 + AluJo SINE Alu 36 294 -18 329 217 26 43 chr4 30699953 30700068 -171628279 - ORSL DNA AcHobo -160 115 3 205 375 55 16 chr4 30701365 30701493 -171626854 + MIR SINE MIR 57 189 -73 2166 99 20 0 chr4 30701998 30702290 -171626057 + AluSq SINE Alu 1 298 -15 460 216 9 35 chr4 30702824 30702940 -171625407 - L2 LINE L2 -18 3295 3183 248 65 0 0 chr4 30703641 30703672 -171624675 - MLT2B1 LTR ERVL -4 511 481 432 0 0 0 chr4 30703674 30703722 -171624625 + (TG)n Simple_repeat Simple_repeat 2 49 0 1327 220 39 65 chr4 30703784 30704197 -171624150 - MLT2B1 LTR ERVL -116 404 3 202 135 27 0 chr4 30704422 30704459 -171623888 + CT-rich Low_complexity Low_complexity 4 41 0 625 65 0 0 chr4 30705112 30705204 -171623143 + Alu SINE Alu 221 312 0 207 343 0 0 chr4 30705262 30705332 -171623015 + L2 LINE L2 3203 3272 0 2143 110 0 0 chr4 30705373 30705663 -171622684 - AluSq SINE Alu -18 295 6 322 353 0 30 chr4 30707913 30708046 -171620301 - MIR SINE MIR -114 148 20 1958 183 17 6 chr4 30708606 30708967 -171619380 + MLT1A1 LTR MaLR 1 365 0 194 322 22 44 chr4 30709121 30709211 -171619136 - L2 LINE L2 -48 3265 3178 705 256 0 0 chr4 30709384 30709540 -171618807 + FRAM SINE Alu 1 156 -10 273 341 209 5 chr4 30709810 30710021 -171618326 + MLT1G1 LTR MaLR 1 254 -341 587 211 91 15 chr4 30710136 30710327 -171618020 + MLT1G1 LTR MaLR 303 595 0 222 105 0 0 chr4 30710450 30710488 -171617859 + (CA)n Simple_repeat Simple_repeat 2 39 0 21 36 0 0 chr4 30710686 30710714 -171617633 + AT_rich Low_complexity Low_complexity 1 28 0 4333 170 22 34 chr4 30710720 30712148 -171616199 - L1MA7 LINE L1 -13 6278 4777 5297 199 38 3 chr4 30713098 30714292 -171614055 - L1MC1 LINE L1 0 6333 5101 453 296 37 46 chr4 30714436 30714652 -171613695 - MIR SINE MIR -1 261 48 180 289 39 0 chr4 30715505 30715557 -171612790 - L2 LINE L2 -16 3297 3244 24 67 0 0 chr4 30715741 30715786 -171612561 + AT_rich Low_complexity Low_complexity 1 45 0 973 127 34 19 chr4 30715896 30716101 -171612246 - L1MA7 LINE L1 0 6291 6084 25 75 0 0 chr4 30716802 30716855 -171611492 + AT_rich Low_complexity Low_complexity 1 53 0 6594 99 8 5 chr4 30716915 30719857 -171608490 + L1PA8 LINE L1 3177 6172 0 519 183 6 85 chr4 30719960 30720124 -171608223 + L1MA1 LINE L1 6048 6198 -104 27 0 0 0 chr4 30720188 30720215 -171608132 + AT_rich Low_complexity Low_complexity 1 27 0 1992 143 29 35 chr4 30720689 30721066 -171607281 + THE1C LTR MaLR 1 375 0 5216 160 56 7 chr4 30721094 30721987 -171606360 + THE1C-int LTR MaLR 17 953 -627 7287 175 9 39 chr4 30721991 30723391 -171604956 - MSTA-int LTR MaLR -220 1360 3 1437 196 139 18 chr4 30723393 30723775 -171604572 - MSTA LTR MaLR 0 428 1 401 153 14 0 chr4 30723775 30723847 -171604500 + L1PA15 LINE L1 6086 6158 -7 718 251 22 56 chr4 30723861 30724200 -171604147 + L1ME2 LINE L1 5255 5609 -553 1286 192 36 126 chr4 30724200 30724482 -171603865 - MER39 LTR ERV1 0 707 401 2107 115 0 0 chr4 30724482 30724769 -171603578 - AluSq SINE Alu -26 287 1 1286 192 36 126 chr4 30724769 30725057 -171603290 - MER39 LTR ERV1 -306 401 1 1248 279 41 24 chr4 30725061 30725595 -171602752 + L1ME2 LINE L1 5611 6153 -11 634 324 112 41 chr4 30726263 30726674 -171601673 + L2 LINE L2 2874 3313 0 1896 109 138 3 chr4 30726756 30727076 -171601271 - THE1B LTR MaLR 0 364 2 235 378 79 6 chr4 30727246 30727410 -171600937 - MIR SINE MIR -7 255 80 517 295 14 0 chr4 30727439 30727578 -171600769 + MER63A DNA MER1_type 42 182 -28 2929 252 49 36 chr4 30730019 30730805 -171597542 + L1MC3 LINE L1 3919 4119 -2027 2404 135 5 11 chr4 30730805 30731182 -171597165 - THE1C LTR MaLR 0 375 1 2929 252 49 36 chr4 30731182 30732484 -171595863 + L1MC3 LINE L1 4119 5403 -743 3910 211 77 43 chr4 30732487 30733443 -171594904 + L1MC3 LINE L1 6620 7622 -163 1933 131 3 0 chr4 30733443 30733733 -171594614 + AluSq SINE Alu 2 292 -21 3910 211 77 43 chr4 30733733 30733903 -171594444 + L1MC3 LINE L1 7622 7785 0 926 116 11 28 chr4 30734039 30734220 -171594127 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 1681 190 0 7 chr4 30734226 30734526 -171593821 - AluJb SINE Alu -2 310 13 348 299 0 28 chr4 30734585 30734692 -171593655 + GA-rich Low_complexity Low_complexity 1 104 0 21 0 0 0 chr4 30735840 30735861 -171592486 + AT_rich Low_complexity Low_complexity 1 21 0 1913 152 3 3 chr4 30735864 30736173 -171592174 + AluSx SINE Alu 1 309 -3 473 45 0 0 chr4 30736862 30736929 -171591418 - AluY SINE Alu 0 310 244 9853 37 3 158 chr4 30738688 30740329 -171588018 - SVA Other Other 0 1386 1 400 351 63 19 chr4 30740397 30740602 -171587745 - MIR SINE MIR -2 260 47 205 289 118 67 chr4 30740698 30740833 -171587514 - MIR3 SINE MIR -24 184 43 21 57 0 0 chr4 30741946 30741981 -171586366 + AT_rich Low_complexity Low_complexity 1 35 0 216 86 0 0 chr4 30742456 30742491 -171585856 + (T)n Simple_repeat Simple_repeat 1 35 0 1975 80 8 4 chr4 30742541 30742805 -171585542 + AluSp SINE Alu 39 303 -10 191 315 0 0 chr4 30742833 30742887 -171585460 + L2 LINE L2 3259 3312 -1 716 314 73 16 chr4 30743665 30744106 -171584241 - MLT1G1 LTR MaLR -36 559 75 315 283 89 50 chr4 30744149 30744329 -171584018 + MLT1L LTR MaLR 357 543 -72 819 259 21 43 chr4 30744374 30744656 -171583691 - MER93b LTR ERV1 0 373 98 389 20 0 20 chr4 30745456 30745507 -171582840 + (TTCC)n Simple_repeat Simple_repeat 2 51 0 207 186 0 0 chr4 30745510 30745553 -171582794 + CT-rich Low_complexity Low_complexity 1 43 0 208 111 44 0 chr4 30746292 30746337 -171582010 + CT-rich Low_complexity Low_complexity 1 47 0 256 283 40 10 chr4 30746389 30746488 -171581859 + MIR3 SINE MIR 85 186 -22 355 294 123 0 chr4 30748473 30748619 -171579728 + MIR SINE MIR 20 183 -79 554 253 152 17 chr4 30748930 30749167 -171579180 + MER5C DNA MER1_type 56 324 0 7674 25 0 0 chr4 30749614 30750679 -171577668 + L1PA3 LINE L1 5095 6155 0 1503 292 88 59 chr4 30751118 30752252 -171576095 + L2 LINE L2 2046 3297 -16 28 0 0 0 chr4 30752730 30752758 -171575589 + AT_rich Low_complexity Low_complexity 1 28 0 275 296 163 0 chr4 30753214 30753312 -171575035 - MIR SINE MIR -75 187 74 1780 156 21 12 chr4 30753588 30753927 -171574420 - L1MA3 LINE L1 0 6305 5964 451 243 85 32 chr4 30753974 30754043 -171574304 - L1ME3A LINE L1 -230 5940 5876 2535 67 6 0 chr4 30754043 30754374 -171573973 + L1PA7 LINE L1 5819 6151 -3 451 243 85 32 chr4 30754374 30754551 -171573796 - L1ME3A LINE L1 -294 5876 5681 22 80 0 0 chr4 30755714 30755764 -171572583 + AT_rich Low_complexity Low_complexity 1 50 0 1812 213 178 0 chr4 30756066 30756493 -171571854 + MLT1D LTR MaLR 1 503 -2 277 266 63 38 chr4 30756497 30756576 -171571771 - L2 LINE L2 -33 3280 3200 215 283 222 33 chr4 30756557 30756737 -171571610 - MIR SINE MIR -32 230 17 * 23 68 0 0 chr4 30756939 30756983 -171571364 + AT_rich Low_complexity Low_complexity 1 44 0 2407 59 0 7 chr4 30757706 30758011 -171570336 - AluY SINE Alu -8 303 1 761 130 0 0 chr4 30758044 30758159 -171570188 - L1PB3 LINE L1 0 6154 6040 23 86 0 0 chr4 30758557 30758615 -171569732 + AT_rich Low_complexity Low_complexity 1 58 0 522 81 23 0 chr4 30758921 30759007 -171569340 + L1PB1 LINE L1 6059 6146 -5 986 167 39 56 chr4 30759038 30759159 -171569188 + MSTA LTR MaLR 67 184 -244 1799 175 0 28 chr4 30759159 30759479 -171568868 + AluJb SINE Alu 1 311 -1 986 167 39 56 chr4 30759479 30759590 -171568757 + MSTA LTR MaLR 184 295 -133 1934 126 7 0 chr4 30760115 30760413 -171567934 - AluSx SINE Alu 0 303 4 225 164 55 18 chr4 30761032 30761087 -171567260 - MER82 DNA MER2_type -430 223 167 201 74 0 0 chr4 30761512 30761539 -171566808 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 897 221 10 36 chr4 30763132 30763327 -171565020 - AluJb SINE Alu -20 292 103 206 310 0 0 chr4 30763881 30763939 -171564408 + A-rich Low_complexity Low_complexity 2 59 0 188 246 246 0 chr4 30764212 30764273 -171564074 + L2 LINE L2 1052 1127 -2187 247 339 58 58 chr4 30764410 30764667 -171563680 + L2 LINE L2 1390 1646 -1668 716 109 36 7 chr4 30764667 30764805 -171563542 + CT-rich Low_complexity Low_complexity 4 145 0 1447 182 54 20 chr4 30764807 30765103 -171563244 - AluJo SINE Alu -6 306 1 259 307 9 26 chr4 30765115 30765229 -171563118 + L2 LINE L2 1611 1722 -1592 775 268 31 65 chr4 30765343 30765820 -171562527 + L1MEc LINE L1 1258 1718 -4678 230 286 140 12 chr4 30765843 30766014 -171562333 - L1ME LINE L1 -5145 1977 1785 242 236 0 14 chr4 30766023 30766095 -171562252 + (TA)n Simple_repeat Simple_repeat 2 72 0 359 291 79 26 chr4 30766106 30766317 -171562030 - L1ME LINE L1 -4876 1708 1322 560 290 53 60 chr4 30766630 30767065 -171561282 - L1ME LINE L1 -5972 451 20 21 0 0 0 chr4 30767787 30767808 -171560539 + AT_rich Low_complexity Low_complexity 1 21 0 199 373 25 54 chr4 30770345 30770549 -171557798 + L2 LINE L2 2259 2456 -858 755 239 48 43 chr4 30770550 30770759 -171557588 - MER63A DNA MER1_type 0 210 1 210 128 85 0 chr4 30771020 30771067 -171557280 + (TTATA)n Simple_repeat Simple_repeat 1 51 0 21 0 0 0 chr4 30771411 30771432 -171556915 + AT_rich Low_complexity Low_complexity 1 21 0 458 309 58 39 chr4 30771961 30772168 -171556179 - MIR SINE MIR -41 221 11 202 89 67 0 chr4 30773023 30773068 -171555279 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 207 0 0 0 chr4 30774609 30774632 -171553715 + (CA)n Simple_repeat Simple_repeat 2 24 0 25 51 0 0 chr4 30775213 30775252 -171553095 + AT_rich Low_complexity Low_complexity 1 39 0 4119 199 35 0 chr4 30775335 30776195 -171552152 - L1MC1 LINE L1 0 6333 5444 1472 205 16 70 chr4 30776674 30777060 -171551287 + MLT1A1 LTR MaLR 1 365 0 25 0 0 0 chr4 30777251 30777276 -171551071 + AT_rich Low_complexity Low_complexity 1 25 0 24 53 0 0 chr4 30777636 30777674 -171550673 + AT_rich Low_complexity Low_complexity 1 38 0 242 154 0 31 chr4 30777945 30778010 -171550337 + (AATAG)n Simple_repeat Simple_repeat 4 66 0 704 296 62 101 chr4 30778093 30778294 -171550053 - LTR16A LTR ERVL -4 446 239 1923 160 10 44 chr4 30778294 30778682 -171549665 - THE1C LTR MaLR 0 375 1 704 296 62 101 chr4 30778682 30778916 -171549431 - LTR16A LTR ERVL -211 239 28 527 207 53 147 chr4 30778985 30779415 -171548932 + MLT1B LTR MaLR 1 390 0 24 0 0 0 chr4 30779566 30779590 -171548757 + AT_rich Low_complexity Low_complexity 1 24 0 279 294 12 0 chr4 30779845 30779930 -171548417 + GA-rich Low_complexity Low_complexity 2 87 0 494 312 0 0 chr4 30781394 30781519 -171546828 + L2 LINE L2 3187 3311 -2 2152 107 3 0 chr4 30781563 30781854 -171546493 + AluSp SINE Alu 7 298 -15 224 306 0 0 chr4 30782899 30782971 -171545376 + A-rich Low_complexity Low_complexity 1 72 0 21 0 0 0 chr4 30783195 30783216 -171545131 + AT_rich Low_complexity Low_complexity 1 21 0 426 296 69 75 chr4 30783878 30784139 -171544208 + L2 LINE L2 2921 3181 -132 2162 110 0 17 chr4 30784139 30784438 -171543909 - AluSg SINE Alu -16 294 1 426 296 69 75 chr4 30784438 30784537 -171543810 + L2 LINE L2 3181 3279 -34 656 99 2 0 chr4 30784537 30784668 -171543679 + L1PA8 LINE L1 6012 6183 0 239 262 0 10 chr4 30784688 30784791 -171543556 + GA-rich Low_complexity Low_complexity 3 104 0 339 320 33 0 chr4 30785139 30785261 -171543086 - L2 LINE L2 -666 2648 2523 262 259 43 86 chr4 30785800 30785916 -171542431 + L2 LINE L2 3203 3313 0 * 591 290 55 47 chr4 30785914 30786169 -171542178 + MIR SINE MIR 6 262 0 2802 16 0 0 chr4 30787175 30787484 -171540863 + AluY SINE Alu 1 309 -2 214 273 31 31 chr4 30789353 30789481 -171538866 + (CATATA)n Simple_repeat Simple_repeat 1 128 0 23 33 0 0 chr4 30789587 30789617 -171538730 + AT_rich Low_complexity Low_complexity 1 30 0 200 291 107 29 chr4 30789968 30790071 -171538276 - MER5A DNA MER1_type -78 111 1 192 291 89 13 chr4 30790119 30790198 -171538149 + MIR3 SINE MIR 72 156 -52 350 281 103 11 chr4 30790221 30790406 -171537941 - MER112 DNA MER1_type -41 219 18 39 74 0 0 chr4 30790681 30790762 -171537585 + AT_rich Low_complexity Low_complexity 1 81 0 672 258 0 11 chr4 30791119 30791297 -171537050 - MER5B DNA MER1_type -2 176 1 21 36 0 0 chr4 30791387 30791415 -171536932 + AT_rich Low_complexity Low_complexity 1 28 0 2030 324 13 41 chr4 30791618 30792045 -171536302 + L1PA13 LINE L1 1 439 -6348 1603 154 90 39 chr4 30792045 30792402 -171535945 - THE1C LTR MaLR 0 375 1 8854 152 12 44 chr4 30792402 30794032 -171534315 - THE1C-int LTR MaLR 0 1580 4 1393 156 121 38 chr4 30794035 30794381 -171533966 - THE1C LTR MaLR 0 375 1 2030 324 13 41 chr4 30794381 30794725 -171533622 + L1PA13 LINE L1 440 755 -6032 1631 228 33 10 chr4 30794791 30795186 -171533161 + L1PA13 LINE L1 1513 1916 -4871 919 236 84 55 chr4 30795493 30795947 -171532400 + MLT1C LTR MaLR 1 467 0 287 266 11 21 chr4 30796324 30796418 -171531929 + (TA)n Simple_repeat Simple_repeat 1 93 0 202 349 99 36 chr4 30796716 30797020 -171531327 - L2 LINE L2 -337 2977 2655 189 147 0 0 chr4 30797589 30797623 -171530724 + (TC)n Simple_repeat Simple_repeat 2 35 0 2635 76 6 8 chr4 30797655 30798011 -171530336 + THE1A LTR MaLR 1 355 0 313 299 0 0 chr4 30798476 30798543 -171529804 - MLT1K LTR MaLR -342 246 180 625 237 56 47 chr4 30798548 30798763 -171529584 - MER20 DNA MER1_type 0 219 3 1729 196 25 11 chr4 30799786 30800144 -171528203 - MLT1A1 LTR MaLR 0 365 3 252 59 0 0 chr4 30800144 30800178 -171528169 + (CAT)n Simple_repeat Simple_repeat 3 36 0 1061 224 41 103 chr4 30800286 30800903 -171527444 + MLT1E3 LTR MaLR 7 610 -14 420 316 0 0 chr4 30800963 30801061 -171527286 + MIR SINE MIR 3 100 -162 183 80 0 0 chr4 30801567 30801592 -171526755 + (TTTTC)n Simple_repeat Simple_repeat 2 26 0 23 0 0 0 chr4 30802739 30802762 -171525585 + AT_rich Low_complexity Low_complexity 1 23 0 2451 119 3 17 chr4 30805350 30805710 -171522637 + THE1A LTR MaLR 1 355 0 11072 101 15 8 chr4 30805710 30807278 -171521069 + THE1A-int LTR MaLR 1 1580 0 2360 117 6 0 chr4 30807278 30807629 -171520718 + THE1A LTR MaLR 1 353 -2 421 289 118 21 chr4 30807903 30808090 -171520257 - MIR SINE MIR -3 259 55 240 309 80 37 chr4 30808108 30808270 -171520077 + L2 LINE L2 3133 3301 -12 4465 47 40 11 chr4 30809833 30810407 -171517940 + LTR10C LTR ERV1 1 591 0 274 320 13 0 chr4 30810538 30810613 -171517734 + polypyrimidine Low_complexity Low_complexity 5 80 0 2558 128 66 2 chr4 30810819 30811227 -171517120 + MER57B LTR ERV1 1 434 0 186 103 0 0 chr4 30812003 30812032 -171516315 + (TTTTG)n Simple_repeat Simple_repeat 4 32 0 519 92 0 0 chr4 30812995 30813082 -171515265 + (TG)n Simple_repeat Simple_repeat 2 88 0 2039 86 4 11 chr4 30816324 30816643 -171511704 + AluY SINE Alu 17 333 0 209 32 0 32 chr4 30817656 30817687 -171510660 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 2312 76 0 3 chr4 30817690 30817978 -171510369 - AluY SINE Alu -24 287 1 503 313 68 16 chr4 30818491 30818683 -171509664 - MIR3 SINE MIR -5 203 2 1725 152 61 7 chr4 30819122 30819432 -171508915 + L1MA4A LINE L1 5977 6303 0 7860 142 46 8 chr4 30819810 30821051 -171507296 + THE1C-int LTR MaLR 286 1573 -7 2100 154 56 8 chr4 30821057 30821415 -171506932 + THE1C LTR MaLR 1 375 0 365 363 45 0 chr4 30821492 30821671 -171506676 - MIR SINE MIR -70 192 6 308 211 29 0 chr4 30822505 30822609 -171505738 + (TA)n Simple_repeat Simple_repeat 2 108 0 474 128 51 0 chr4 30822612 30822690 -171505657 + THE1C LTR MaLR 97 178 -197 281 185 43 0 chr4 30822690 30822782 -171505565 + (TA)n Simple_repeat Simple_repeat 2 97 0 238 276 13 26 chr4 30823489 30823565 -171504782 + L2 LINE L2 3185 3259 -54 22 0 0 0 chr4 30824261 30824283 -171504064 + GC_rich Low_complexity Low_complexity 1 22 0 65 70 0 0 chr4 30824300 30824428 -171503919 + AT_rich Low_complexity Low_complexity 1 128 0 213 100 33 17 chr4 30824448 30824508 -171503839 + (TAAA)n Simple_repeat Simple_repeat 3 63 0 305 184 48 27 chr4 30824508 30824655 -171503692 + (TATAA)n Simple_repeat Simple_repeat 1 150 0 985 187 0 0 chr4 30824945 30825111 -171503236 - FRAM SINE Alu -12 164 1 225 65 0 0 chr4 30825196 30825227 -171503120 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 255 271 60 38 chr4 30825274 30825407 -171502940 + L1M4 LINE L1 3753 3888 -2258 316 161 65 0 chr4 30825436 30825498 -171502849 - MIR SINE MIR -36 226 161 1175 200 14 0 chr4 30825535 30825750 -171502597 - MER58A DNA MER1_type -1 223 6 1410 201 80 37 chr4 30826698 30827072 -171501275 - MLT1B LTR MaLR 0 390 1 679 231 143 6 chr4 30827840 30828022 -171500325 + MER63A DNA MER1_type 4 210 0 5801 141 31 13 chr4 30828195 30829290 -171499057 - L1MA8 LINE L1 -1 6290 5174 244 317 188 20 chr4 30829513 30829715 -171498632 - L2 LINE L2 -456 2858 2623 383 305 103 6 chr4 30829889 30830063 -171498284 + L2 LINE L2 3115 3305 -8 266 286 105 29 chr4 30830211 30830316 -171498031 - L2 LINE L2 0 3313 3201 336 280 259 16 chr4 30830419 30830612 -171497735 - MIR SINE MIR -6 256 17 26 30 0 0 chr4 30831022 30831055 -171497292 + AT_rich Low_complexity Low_complexity 1 33 0 255 358 57 0 chr4 30832618 30832741 -171495606 - MIR3 SINE MIR -50 158 29 353 304 144 21 chr4 30834294 30834537 -171493810 - L1ME4a LINE L1 -82 6039 5767 2554 66 0 0 chr4 30834541 30834846 -171493501 - AluY SINE Alu -6 305 1 295 254 14 0 chr4 30834895 30834966 -171493381 - L1ME4a LINE L1 -449 5672 5601 1826 172 0 0 chr4 30835184 30835469 -171492878 + AluSx SINE Alu 1 285 -27 411 38 0 0 chr4 30835469 30835522 -171492825 + (CAAAC)n Simple_repeat Simple_repeat 2 54 0 408 255 99 28 chr4 30835579 30835720 -171492627 - MER5A DNA MER1_type -36 153 3 4895 137 23 71 chr4 30836770 30837704 -171490643 + L1MB3 LINE L1 5254 6141 -42 2059 146 0 9 chr4 30837704 30838019 -171490328 + AluSx SINE Alu 1 312 0 4895 137 23 71 chr4 30838019 30838059 -171490288 + L1MB3 LINE L1 6141 6181 -2 183 203 101 51 chr4 30838383 30838462 -171489885 - MIR3 SINE MIR -21 187 105 3325 119 40 13 chr4 30838468 30839022 -171489325 + LTR49 LTR ERV1 27 595 0 517 184 280 0 chr4 30839656 30839781 -171488566 - MER47A DNA MER2_type -206 160 1 1831 268 62 66 chr4 30839781 30839851 -171488496 - L1MEc LINE L1 -4349 2047 1978 921 127 0 0 chr4 30839851 30839969 -171488378 + FLAM_C SINE Alu 1 118 -15 1831 268 62 66 chr4 30839969 30840094 -171488253 - L1MEc LINE L1 -4418 1978 1854 3813 107 25 4 chr4 30840094 30840610 -171487737 + MER1A DNA MER1_type 1 527 0 1831 268 62 66 chr4 30840610 30841048 -171487299 - L1MEc LINE L1 -4542 1854 1414 2384 182 34 2 chr4 30841048 30841461 -171486886 - MSTB LTR MaLR 0 426 1 1831 268 62 66 chr4 30841461 30841722 -171486625 - L1MEc LINE L1 -4982 1414 1154 2602 49 0 3 chr4 30841722 30842029 -171486318 - AluSx SINE Alu -6 306 1 32 43 0 0 chr4 30842313 30842359 -171485988 + AT_rich Low_complexity Low_complexity 1 46 0 230 369 18 9 chr4 30842549 30842660 -171485687 - MIR3 SINE MIR -46 162 51 483 87 0 0 chr4 30844081 30844150 -171484197 + (GA)n Simple_repeat Simple_repeat 2 70 0 460 287 85 38 chr4 30844462 30844755 -171483592 + L1ME LINE L1 3268 3574 -2572 372 300 55 74 chr4 30844759 30844848 -171483499 + L1ME LINE L1 4095 4184 -1962 2175 104 0 0 chr4 30844848 30845127 -171483220 + AluSq SINE Alu 1 279 -34 372 300 55 74 chr4 30845127 30845294 -171483053 + L1ME LINE L1 4184 4346 -1800 595 297 68 19 chr4 30845308 30845719 -171482628 + L1ME LINE L1 4391 4821 -1325 376 245 73 123 chr4 30846649 30846853 -171481494 + MIR SINE MIR 37 230 -32 487 299 85 47 chr4 30847167 30847568 -171480779 + L1ME LINE L1 5320 5735 -386 25359 76 4 3 chr4 30848012 30851210 -171477137 - HERVL-A2 LTR ERVL -2455 3199 1 3286 92 46 0 chr4 30851210 30851643 -171476704 - MLT2A2 LTR ERVL 0 453 1 1741 136 3 107 chr4 30852345 30852691 -171475656 - AluJo SINE Alu 0 312 3 284 287 60 121 chr4 30852910 30853356 -171474991 - L2 LINE L2 -3 3269 2851 2241 75 7 0 chr4 30853540 30853847 -171474500 - AluSp SINE Alu 0 309 1 430 268 39 8 chr4 30854230 30854357 -171473990 + MER5A DNA MER1_type 59 189 0 2195 110 0 0 chr4 30854653 30854945 -171473402 - AluSc SINE Alu -17 292 1 1918 117 11 7 chr4 30854951 30855282 -171473065 - AluSx SINE Alu 0 332 1 190 132 38 19 chr4 30855511 30855564 -171472783 + GA-rich Low_complexity Low_complexity 1 54 0 295 273 279 12 chr4 30856252 30856417 -171471930 + L1MC5 LINE L1 7701 7909 -52 1434 172 0 65 chr4 30858633 30858742 -171469605 + AluJo SINE Alu 11 126 -186 216 0 0 0 chr4 30858742 30858766 -171469581 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1434 172 0 65 chr4 30858766 30858964 -171469383 + AluJo SINE Alu 126 298 -14 285 128 0 0 chr4 30859481 30859528 -171468819 + (TG)n Simple_repeat Simple_repeat 2 48 0 317 243 131 9 chr4 30859557 30859664 -171468683 - HAL1b LINE L1 -419 929 810 407 67 104 12 chr4 30859673 30859837 -171468510 + (TA)n Simple_repeat Simple_repeat 1 179 0 235 224 0 0 chr4 30859845 30859894 -171468453 + Alu SINE Alu 245 293 -9 211 104 42 0 chr4 30860734 30860782 -171467565 + (TTTG)n Simple_repeat Simple_repeat 4 53 0 260 309 49 118 chr4 30860854 30861058 -171467289 - MIR SINE MIR 0 262 73 410 274 100 47 chr4 30861673 30861863 -171466484 + MIR SINE MIR 13 212 -50 1086 218 30 25 chr4 30861987 30862312 -171466035 - L1MB7 LINE L1 -51 6123 5811 1802 189 0 0 chr4 30862367 30862673 -171465674 + AluJb SINE Alu 1 306 -6 1820 164 0 24 chr4 30863362 30863660 -171464687 + AluJb SINE Alu 1 291 -21 227 341 71 12 chr4 30863667 30863752 -171464595 + MIR SINE MIR 11 100 -162 9114 155 25 34 chr4 30863852 30865759 -171462588 + L1P3 LINE L1 1060 2942 -3519 425 216 26 43 chr4 30865992 30866108 -171462239 + MLT1J2 LTR MaLR 21 134 -316 225 252 129 93 chr4 30866203 30866342 -171462005 + MLT1J2 LTR MaLR 283 426 -24 544 241 45 100 chr4 30866385 30866675 -171461672 - L2 LINE L2 -52 3261 2988 246 347 9 18 chr4 30866689 30866908 -171461439 + L1M4 LINE L1 3555 3771 -2375 705 145 15 38 chr4 30867096 30867227 -171461120 - MSTB1 LTR MaLR -5 427 300 332 125 0 0 chr4 30867392 30867440 -171460907 - MLT2C1 LTR ERVL 0 397 350 212 323 0 0 chr4 30867494 30867559 -171460788 + (CATATA)n Simple_repeat Simple_repeat 4 68 0 715 237 163 71 chr4 30867560 30867855 -171460492 - MLT2B1 LTR ERVL -50 470 149 574 208 174 0 chr4 30868779 30868928 -171459419 + MER5A DNA MER1_type 14 188 -1 180 97 0 0 chr4 30869061 30869092 -171459255 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 1922 128 0 30 chr4 30871067 30871372 -171456975 - AluJo SINE Alu -16 296 1 799 166 133 0 chr4 30871372 30871523 -171456824 + MER58B DNA MER1_type 171 341 0 440 269 41 58 chr4 30871676 30871847 -171456500 - MIR SINE MIR -46 216 49 283 333 42 0 chr4 30871868 30871964 -171456383 - L2 LINE L2 -22 3250 3151 1674 147 14 14 chr4 30872202 30872495 -171455852 + AluJo SINE Alu 1 293 -19 270 0 0 0 chr4 30872495 30872525 -171455822 + (TG)n Simple_repeat Simple_repeat 2 31 0 573 261 16 38 chr4 30872558 30872742 -171455605 + MIR SINE MIR 83 262 0 3068 274 76 32 chr4 30873931 30874996 -171453351 - L1M4 LINE L1 -749 5397 4223 2154 112 0 0 chr4 30874996 30875292 -171453055 - AluSq SINE Alu -17 296 1 3068 274 76 32 chr4 30875292 30875995 -171452352 - L1M4 LINE L1 -1923 4223 3552 2210 88 3 0 chr4 30876146 30876441 -171451906 + AluSc SINE Alu 2 297 -12 627 317 67 48 chr4 30876501 30876832 -171451515 + L2 LINE L2 2977 3313 0 903 225 18 18 chr4 30880382 30880609 -171447738 + AluJo SINE Alu 42 268 -44 332 321 56 66 chr4 30880733 30881035 -171447312 - PABL_A LTR ERV1 -314 346 48 270 220 0 0 chr4 30881085 30881135 -171447212 - PABL_B LTR ERV1 -617 50 1 374 219 184 9 chr4 30881135 30881249 -171447098 - MIR SINE MIR -116 146 13 277 202 189 53 chr4 30881313 30881445 -171446902 + MIR SINE MIR 16 164 -67 2348 63 3 0 chr4 30881622 30881921 -171446426 + AluY SINE Alu 1 300 -11 337 355 14 0 chr4 30882807 30882945 -171445402 - L3 LINE CR1 -13 1564 1425 200 267 0 0 chr4 30882953 30882998 -171445349 - MIR3 SINE MIR -6 202 158 1225 278 89 42 chr4 30883328 30884165 -171444182 - L2 LINE L2 0 3313 2210 281 300 0 0 chr4 30884789 30884859 -171443488 - MIR SINE MIR -36 226 157 1652 215 16 37 chr4 30885059 30885441 -171442906 - MLT1A2 LTR MaLR 0 374 1 612 204 275 0 chr4 30885598 30885765 -171442582 - MIR SINE MIR -30 232 20 601 279 82 17 chr4 30886311 30886544 -171441803 + L2 LINE L2 3066 3313 0 228 276 211 16 chr4 30887130 30887253 -171441094 + MIR SINE MIR 8 154 -108 3212 135 45 2 chr4 30887256 30887766 -171440581 - LTR26 LTR ERV1 -38 565 34 239 262 156 21 chr4 30888150 30888291 -171440056 - L3 LINE CR1 -169 1408 1249 450 0 0 0 chr4 30889755 30889805 -171438542 + (CA)n Simple_repeat Simple_repeat 2 51 0 449 235 139 37 chr4 30890167 30890354 -171437993 + LTR67 LTR ERVL 352 557 0 2041 64 75 3 chr4 30890472 30890754 -171437593 - AluY SINE Alu -9 302 1 1174 315 100 8 chr4 30891406 30892279 -171436068 + ERVL LTR ERVL 2957 3947 -1817 521 222 51 0 chr4 30892412 30892529 -171435818 + MIR SINE MIR 138 260 -2 570 250 23 56 chr4 30892713 30892969 -171435378 + MER21B LTR ERV1 52 265 -598 * 4312 157 17 4 chr4 30892953 30893655 -171434692 - MER50 LTR ERV1 -23 711 1 1524 206 3 3 chr4 30893811 30894112 -171434235 + AluJb SINE Alu 3 303 -9 334 209 9 100 chr4 30894114 30894224 -171434123 + MER21-int LTR ERV1 2354 2453 -1738 1043 74 0 7 chr4 30894302 30894437 -171433910 - AluY SINE Alu -177 134 1 2226 181 81 19 chr4 30894437 30894868 -171433479 - LTR26B LTR ERV1 -73 458 1 251 291 90 52 chr4 30894884 30895018 -171433329 + MIR SINE MIR 65 203 -59 1121 216 161 52 chr4 30895398 30895838 -171432509 - MER50 LTR ERV1 -7 727 240 3557 135 26 2 chr4 30896014 30896555 -171431792 + MER41A LTR ERV1 1 554 0 494 162 430 6 chr4 30896680 30896859 -171431488 + LTR8 LTR ERV1 3 257 -434 5860 128 266 61 chr4 30896892 30898312 -171430035 - pTR5 LTR ERV1 0 2438 728 3860 99 9 3 chr4 30898297 30898880 -171429467 - PABL_B-int LTR ERV1 -3392 1623 1038 * 5881 100 21 20 chr4 30898878 30899729 -171428618 - PABL_B-int LTR ERV1 -4162 853 2 1025 166 12 0 chr4 30899731 30899900 -171428447 - PABL_B LTR ERV1 -2 665 495 215 128 26 0 chr4 30900646 30900685 -171427662 - L2 LINE L2 -17 3255 3216 * 613 275 52 26 chr4 30900653 30900846 -171427501 - MIR SINE MIR -19 243 46 1636 209 49 12 chr4 30902463 30902808 -171425539 - L1MC4a LINE L1 -1954 5854 5497 907 262 216 14 chr4 30902873 30903466 -171424881 + L2 LINE L2 2535 3230 -83 286 318 200 19 chr4 30905052 30905583 -171422764 + L2 LINE L2 2253 2975 -339 189 349 87 40 chr4 30905617 30905743 -171422604 + L2 LINE L2 3173 3304 -9 203 368 64 9 chr4 30905855 30905972 -171422375 + MIR3 SINE MIR 36 159 -49 247 295 93 39 chr4 30906010 30906139 -171422208 - MIR SINE MIR -2 260 125 1485 176 54 4 chr4 30906143 30906422 -171421925 + AluSx SINE Alu 1 293 -19 7008 149 41 0 chr4 30906535 30907628 -171420719 - THE1C-int LTR MaLR -442 1138 1 1985 138 98 17 chr4 30907628 30907975 -171420372 - THE1C LTR MaLR 0 375 1 873 174 0 0 chr4 30908398 30908542 -171419805 - PABL_B LTR ERV1 0 667 524 2026 132 0 0 chr4 30909505 30909808 -171418539 - AluSx SINE Alu -9 303 1 2133 112 0 7 chr4 30909819 30910123 -171418224 - AluSx SINE Alu -9 303 2 378 0 0 0 chr4 30911329 30911371 -171416976 + (CA)n Simple_repeat Simple_repeat 2 43 0 482 253 136 19 chr4 30912300 30912454 -171415893 + MIR SINE MIR 81 252 -10 230 282 222 8 chr4 30912769 30912886 -171415461 + MER5A DNA MER1_type 7 148 -41 1086 279 112 3 chr4 30912910 30913258 -171415089 + L2 LINE L2 2928 3313 0 575 228 37 22 chr4 30913286 30913422 -171414925 + MLT1I LTR MaLR 6 143 -266 485 277 51 0 chr4 30913503 30913640 -171414707 + MLT1I LTR MaLR 266 409 0 344 333 146 15 chr4 30914370 30914631 -171413716 + L2 LINE L2 2937 3231 -41 182 91 30 0 chr4 30914889 30914922 -171413425 + GA-rich Low_complexity Low_complexity 1 34 0 243 88 0 0 chr4 30916108 30916142 -171412205 + (TG)n Simple_repeat Simple_repeat 2 35 0 3467 102 132 2 chr4 30916712 30917252 -171411095 + LTR66 LTR ERVL 1 610 0 9135 100 20 5 chr4 30917253 30918578 -171409769 + HERVL66 LTR ERVL 1 1346 -2983 981 191 4 49 chr4 30968582 30968807 -171359540 - L1M2 LINE L1 -484 5807 5593 216 219 0 0 chr4 30968971 30969012 -171359335 + T-rich Low_complexity Low_complexity 1 41 0 23 33 0 0 chr4 30969659 30969689 -171358658 + AT_rich Low_complexity Low_complexity 1 30 0 35 63 0 0 chr4 30971274 30971337 -171357010 + AT_rich Low_complexity Low_complexity 1 63 0 238 303 13 13 chr4 30971361 30971437 -171356910 + MIR SINE MIR 51 126 -136 665 319 82 6 chr4 30971537 30971854 -171356493 + L2 LINE L2 796 1136 -2178 1022 304 131 38 chr4 30972353 30972912 -171355435 + L2 LINE L2 1163 1773 -1541 21 36 0 0 chr4 30973444 30973472 -171354875 + AT_rich Low_complexity Low_complexity 1 28 0 448 236 9 125 chr4 30973873 30974296 -171354051 + L1MC5 LINE L1 6900 7273 -688 224 237 92 0 chr4 30974439 30974515 -171353832 + L2 LINE L2 3163 3245 -68 458 286 132 78 chr4 30974775 30974894 -171353453 - HAL1 LINE L1 -135 2372 2261 1002 136 51 6 chr4 30974894 30975071 -171353276 - L1PA15 LINE L1 0 6165 5981 458 286 132 78 chr4 30975071 30975776 -171352571 - HAL1 LINE L1 -246 2261 1503 507 218 85 24 chr4 30976076 30976287 -171352060 - MER113 DNA MER1_type? -216 305 82 2175 57 7 3 chr4 30977596 30977879 -171350468 + L1PA7 LINE L1 5871 6154 0 573 294 75 0 chr4 30978637 30978824 -171349523 + MER58A DNA MER1_type 2 202 -22 189 0 0 0 chr4 30978824 30978845 -171349502 + (TAAA)n Simple_repeat Simple_repeat 4 24 0 447 250 83 81 chr4 30979234 30979412 -171348935 - MIR3 SINE MIR -26 182 8 384 181 0 0 chr4 30980142 30980225 -171348122 + CT-rich Low_complexity Low_complexity 2 84 0 328 225 22 22 chr4 30980665 30980754 -171347593 - MIR SINE MIR -28 234 146 704 308 124 14 chr4 30981189 30981536 -171346811 + LTR16A LTR ERVL 64 448 -2 2885 163 72 0 chr4 30982239 30982793 -171345554 - L1PA16 LINE L1 -5 6161 5568 4235 206 30 7 chr4 30982901 30983693 -171344654 - L1PA16 LINE L1 -743 5403 4584 3007 85 71 2 chr4 30983693 30983732 -171344615 - MLT2A2 LTR ERVL 0 453 418 693 24 0 0 chr4 30983732 30983815 -171344532 + (TAGA)n Simple_repeat Simple_repeat 3 85 0 3007 85 71 2 chr4 30983815 30984199 -171344148 - MLT2A2 LTR ERVL -35 418 1 4235 206 30 7 chr4 30984199 30984376 -171343971 - L1PA16 LINE L1 -1562 4584 4412 189 0 0 0 chr4 30984377 30984398 -171343949 + (TTTTA)n Simple_repeat Simple_repeat 5 25 0 683 238 99 6 chr4 30985420 30985592 -171342755 - MER5A DNA MER1_type -1 188 1 755 251 165 39 chr4 30985758 30986374 -171341973 - LTR41 LTR ERVL -12 761 5 282 311 33 0 chr4 30986511 30986601 -171341746 + L2 LINE L2 3178 3270 -2 409 308 15 8 chr4 30987441 30987571 -171340776 - L2 LINE L2 -1010 2304 2174 588 295 34 19 chr4 30987826 30988033 -171340314 - MIR SINE MIR -41 221 12 1338 184 80 3 chr4 30988889 30989177 -171339170 - 7SLRNA srpRNA srpRNA -9 311 2 216 163 0 0 chr4 30989259 30989302 -171339045 + T-rich Low_complexity Low_complexity 1 43 0 319 253 75 40 chr4 30989508 30989682 -171338665 - L1ME4a LINE L1 0 6121 5942 21 0 0 0 chr4 30989682 30989703 -171338644 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr4 30989826 30989856 -171338491 + AT_rich Low_complexity Low_complexity 1 30 0 566 302 54 15 chr4 30989880 30990085 -171338262 - MIR SINE MIR -19 243 31 204 222 0 0 chr4 30990242 30990278 -171338069 + polypyrimidine Low_complexity Low_complexity 4 39 0 11832 195 62 11 chr4 30990532 30992261 -171336086 - Tigger1 DNA MER2_type -1 2417 543 1788 159 25 0 chr4 30992261 30992582 -171335765 - AluSx SINE Alu 0 328 1 11832 195 62 11 chr4 30992582 30993124 -171335223 - Tigger1 DNA MER2_type -1875 543 30 194 351 39 13 chr4 30993208 30993285 -171335062 + L2 LINE L2 3235 3313 0 855 97 0 0 chr4 30993673 30993786 -171334561 + AluSg SINE Alu 1 113 -197 445 208 9 57 chr4 30993787 30993893 -171334454 - MER5A DNA MER1_type -86 103 3 21 0 0 0 chr4 30994182 30994203 -171334144 + AT_rich Low_complexity Low_complexity 1 21 0 2014 124 0 0 chr4 30994210 30994548 -171333799 - AluSx SINE Alu 0 338 1 2068 197 24 53 chr4 30994878 30995422 -171332925 - L1MA7 LINE L1 -6 6285 5758 252 296 11 11 chr4 30996057 30996145 -171332202 + GA-rich Low_complexity Low_complexity 1 88 0 2958 134 15 0 chr4 30996630 30997107 -171331240 + LTR19A LTR ERV1 1 484 -2 197 306 20 0 chr4 30997973 30998022 -171330325 + L2 LINE L2 3134 3183 -89 65 45 0 9 chr4 30998758 30998830 -171329517 + AT_rich Low_complexity Low_complexity 1 73 -37 2211 102 0 0 chr4 30998830 30999125 -171329222 - AluSx SINE Alu -15 297 3 65 45 0 9 chr4 30999125 30999163 -171329184 + AT_rich Low_complexity Low_complexity 73 110 0 3226 195 6 5 chr4 30999275 30999920 -171328427 - L1MB3 LINE L1 -11 6172 5527 440 195 0 11 chr4 31000975 31001062 -171327285 - Tigger5 DNA MER2_type 0 2323 2238 363 261 0 11 chr4 31001115 31001203 -171327144 + Tigger5 DNA MER2_type 2 88 -2235 375 162 15 15 chr4 31001225 31001293 -171327054 - Tigger5 DNA MER2_type -5 2318 2251 333 200 0 0 chr4 31001262 31001317 -171327030 - Tigger5 DNA MER2_type -2268 55 1 * 227 203 34 17 chr4 31002174 31002233 -171326114 - L2 LINE L2 -11 3261 3202 22 0 0 0 chr4 31002556 31002578 -171325769 + AT_rich Low_complexity Low_complexity 1 22 0 198 336 30 76 chr4 31002829 31002960 -171325387 - L2 LINE L2 -1 3271 3147 200 376 97 4 chr4 31003166 31003392 -171324955 - L2 LINE L2 -352 2962 2716 986 289 69 17 chr4 31003513 31003991 -171324356 - L1ME3A LINE L1 -138 6032 5530 902 313 59 32 chr4 31004050 31004488 -171323859 + L1MEd LINE L1 928 1377 -5257 24 0 0 0 chr4 31004491 31004515 -171323832 + AT_rich Low_complexity Low_complexity 1 24 0 378 282 68 21 chr4 31004609 31004854 -171323493 + L1MEd LINE L1 1538 1827 -4817 1174 271 121 12 chr4 31005374 31005795 -171322552 - MLT1C LTR MaLR 0 467 1 21 100 0 0 chr4 31005927 31005997 -171322350 + AT_rich Low_complexity Low_complexity 1 70 0 29 70 0 0 chr4 31007031 31007088 -171321259 + AT_rich Low_complexity Low_complexity 1 57 0 1880 144 24 3 chr4 31007100 31007391 -171320956 - AluSx SINE Alu -15 297 1 263 170 21 0 chr4 31007762 31007809 -171320538 + LTR48B LTR ERV1 510 557 -87 2419 186 105 21 chr4 31007866 31008435 -171319912 - LTR48 LTR ERV1 -170 617 1 201 196 0 0 chr4 31008475 31008521 -171319826 + (CTCA)n Simple_repeat Simple_repeat 2 47 0 490 306 89 62 chr4 31008521 31008857 -171319490 - L2 LINE L2 0 3313 2969 449 279 71 33 chr4 31010898 31011070 -171317277 - MLT1J1 LTR MaLR 0 446 274 283 300 106 62 chr4 31012153 31012426 -171315921 - L2 LINE L2 0 3313 3029 267 392 15 30 chr4 31012565 31012764 -171315583 - L2 LINE L2 -454 2860 2665 827 332 151 11 chr4 31012834 31013364 -171314983 - L2 LINE L2 -832 2482 1879 2062 119 3 0 chr4 31013983 31014277 -171314070 - AluSq SINE Alu -18 295 1 1703 141 56 0 chr4 31014416 31014686 -171313661 - AluSq SINE Alu -28 285 1 375 127 0 28 chr4 31014952 31015023 -171313324 - L1MA9 LINE L1 -1 6311 6243 5529 142 11 34 chr4 31015024 31016610 -171311737 - pTR5 LTR ERV1 -2 2436 745 374 192 40 20 chr4 31016610 31016709 -171311638 - L1MA9 LINE L1 -59 6253 6153 23 0 0 0 chr4 31017765 31017788 -171310559 + AT_rich Low_complexity Low_complexity 1 23 0 254 312 64 28 chr4 31017989 31018098 -171310249 - MIR SINE MIR -75 133 21 1335 157 14 128 chr4 31018441 31018786 -171309561 - AluJb SINE Alu -6 306 1 25 0 0 0 chr4 31018878 31018903 -171309444 + AT_rich Low_complexity Low_complexity 1 25 0 337 314 105 19 chr4 31019317 31019575 -171308772 - L2 LINE L2 -411 2903 2624 203 200 0 40 chr4 31020512 31020587 -171307760 + T-rich Low_complexity Low_complexity 1 72 0 182 350 17 17 chr4 31020692 31020752 -171307595 + MIR SINE MIR 16 75 -133 21 0 0 0 chr4 31020952 31020973 -171307374 + AT_rich Low_complexity Low_complexity 1 21 0 2275 86 3 49 chr4 31022135 31022461 -171305886 - AluSp SINE Alu -2 311 1 391 286 10 101 chr4 31022493 31022692 -171305655 + MLT1J1 LTR MaLR 118 298 -148 2523 57 0 25 chr4 31022697 31023015 -171305332 - AluY SINE Alu -1 310 1 270 289 52 31 chr4 31024318 31024415 -171303932 - L2 LINE L2 0 3313 3215 24 0 0 0 chr4 31024680 31024704 -171303643 + AT_rich Low_complexity Low_complexity 1 24 0 2927 155 6 22 chr4 31024722 31025258 -171303089 + L1PA16 LINE L1 5631 6157 -9 244 348 92 12 chr4 31025640 31025804 -171302543 + MIR3 SINE MIR 23 199 -9 2273 133 23 6 chr4 31026405 31026757 -171301590 - THE1B LTR MaLR -6 358 1 543 286 67 6 chr4 31027843 31028021 -171300326 + MIR SINE MIR 37 225 -37 1846 87 11 30 chr4 31028088 31028352 -171299995 - AluSx SINE Alu -15 297 39 390 270 95 7 chr4 31028385 31028522 -171299825 + L2 LINE L2 3165 3313 0 216 315 128 44 chr4 31028599 31028802 -171299545 - MIR SINE MIR 0 262 43 184 151 151 57 chr4 31029745 31029798 -171298549 - L2 LINE L2 -1 3312 3255 23 0 0 0 chr4 31030623 31030646 -171297701 + AT_rich Low_complexity Low_complexity 1 23 0 256 83 0 0 chr4 31031097 31031133 -171297214 - MLT2F LTR ERVL -8 655 620 623 69 30 23 chr4 31031139 31031270 -171297077 + (TAGA)n Simple_repeat Simple_repeat 2 133 0 865 260 21 47 chr4 31031311 31031650 -171296697 - MLT2C1 LTR ERVL -65 332 3 247 362 43 0 chr4 31031968 31032084 -171296263 + MIR3 SINE MIR 43 163 -45 217 244 26 39 chr4 31032434 31032512 -171295835 + GA-rich Low_complexity Low_complexity 6 82 0 210 71 0 0 chr4 31033328 31033356 -171294991 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 212 0 36 0 chr4 31034042 31034070 -171294277 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 204 277 0 0 chr4 31034894 31034959 -171293388 + (TCTA)n Simple_repeat Simple_repeat 1 65 0 1722 142 30 53 chr4 31035364 31035667 -171292680 - AluSg SINE Alu -14 296 1 33 97 0 0 chr4 31035775 31035878 -171292469 + AT_rich Low_complexity Low_complexity 1 103 0 1467 147 15 15 chr4 31036832 31037098 -171291249 - MER34B LTR ERV1 -5 560 295 579 118 0 126 chr4 31037198 31037325 -171291022 - MER34B LTR ERV1 -454 111 1 21 36 0 0 chr4 31037577 31037605 -171290742 + AT_rich Low_complexity Low_complexity 1 28 0 270 185 31 15 chr4 31037929 31037994 -171290353 - MER34B LTR ERV1 -95 470 405 201 250 0 0 chr4 31038005 31038045 -171290302 + polypyrimidine Low_complexity Low_complexity 3 42 0 585 282 120 24 chr4 31038284 31038575 -171289772 - L2 LINE L2 0 3313 2995 2111 118 7 3 chr4 31038621 31038926 -171289421 + AluSp SINE Alu 1 306 -7 760 156 56 38 chr4 31038939 31039099 -171289248 - MER31B LTR ERV1 -4 462 300 1349 98 10 10 chr4 31039694 31039898 -171288449 - L1PA14 LINE L1 -5 6156 5953 17838 169 48 7 chr4 31039904 31043760 -171284587 - L1PA12 LINE L1 -3537 4047 42 198 0 0 0 chr4 31043786 31043808 -171284539 + (A)n Simple_repeat Simple_repeat 1 22 0 240 321 223 0 chr4 31044250 31044434 -171283913 + L2 LINE L2 2737 2961 -353 221 407 50 7 chr4 31044620 31044760 -171283587 - L2 LINE L2 -229 3043 2898 643 247 77 52 chr4 31045162 31045590 -171282757 - MLT1D LTR MaLR 0 505 21 28 29 0 0 chr4 31046056 31046091 -171282256 + AT_rich Low_complexity Low_complexity 1 35 0 399 271 41 0 chr4 31046149 31046271 -171282076 + MLT2E LTR ERVL 1 127 -501 24 0 0 0 chr4 31049218 31049242 -171279105 + AT_rich Low_complexity Low_complexity 1 24 0 186 43 0 0 chr4 31050647 31050670 -171277677 + (TTG)n Simple_repeat Simple_repeat 2 24 0 905 247 24 43 chr4 31051421 31051676 -171276671 + MLT1A2 LTR MaLR 6 255 -119 2423 93 0 3 chr4 31051945 31052258 -171276089 - AluSq SINE Alu -1 312 1 315 241 23 35 chr4 31054350 31054437 -171273910 + MIR3 SINE MIR 87 172 -36 731 237 13 0 chr4 31054539 31054872 -171273475 + FRAM SINE Alu 1 199 0 1014 149 0 6 chr4 31054691 31054905 -171273442 + (GAA)n Simple_repeat Simple_repeat 1 213 0 198 103 0 0 chr4 31055739 31055768 -171272579 + (TATG)n Simple_repeat Simple_repeat 4 32 0 355 169 0 0 chr4 31056157 31056216 -171272131 - MER30 DNA MER1_type -36 194 136 2091 132 7 0 chr4 31056232 31056528 -171271819 + AluSx SINE Alu 3 300 -12 25 0 0 0 chr4 31056914 31056939 -171271408 + AT_rich Low_complexity Low_complexity 1 25 0 22 99 0 0 chr4 31057139 31057210 -171271137 + AT_rich Low_complexity Low_complexity 1 71 0 1875 181 56 0 chr4 31057466 31057787 -171270560 + LTR32 LTR ERVL 14 352 -119 766 190 0 19 chr4 31057830 31057988 -171270359 + LTR32 LTR ERVL 317 471 0 183 231 46 15 chr4 31058043 31058108 -171270239 - MIR SINE MIR -95 167 101 1790 228 78 5 chr4 31058162 31058749 -171269598 - MER39 LTR ERV1 0 707 4 523 289 59 16 chr4 31058772 31058959 -171269388 + MIR SINE MIR 68 262 0 608 86 0 11 chr4 31059013 31059106 -171269241 + (TTCC)n Simple_repeat Simple_repeat 1 92 0 223 383 19 9 chr4 31059296 31059403 -171268944 - MIR SINE MIR -96 166 59 295 289 31 19 chr4 31059696 31059855 -171268492 + (TATATG)n Simple_repeat Simple_repeat 4 164 0 252 322 126 37 chr4 31060278 31060492 -171267855 + MIR SINE MIR 24 256 -6 1723 213 18 45 chr4 31060697 31061186 -171267161 + MER31A LTR ERV1 1 476 -9 524 319 97 42 chr4 31061207 31061681 -171266666 + L2 LINE L2 2183 2682 -632 1365 211 68 53 chr4 31061689 31062142 -171266205 + MER31B LTR ERV1 3 541 -2 201 147 0 0 chr4 31062200 31062234 -171266113 + (AAATG)n Simple_repeat Simple_repeat 2 35 0 238 348 78 10 chr4 31062309 31062513 -171265834 + L2 LINE L2 2967 3184 -129 201 300 71 0 chr4 31064118 31064188 -171264159 - MER91C DNA MER1_type -30 110 36 696 273 64 29 chr4 31064925 31065423 -171262924 + L1ME3A LINE L1 5378 5894 -276 1780 176 6 6 chr4 31065500 31065812 -171262535 + AluJb SINE Alu 1 312 0 237 185 15 15 chr4 31066474 31066539 -171261808 - LTR49 LTR ERV1 -36 559 495 1773 180 0 3 chr4 31066611 31066906 -171261441 + AluSx SINE Alu 1 294 -18 277 43 43 0 chr4 31066906 31066953 -171261394 + (TA)n Simple_repeat Simple_repeat 2 50 0 3030 127 60 10 chr4 31066960 31067478 -171260869 - MER39B LTR ERV1 -109 544 1 469 165 0 0 chr4 31067728 31067819 -171260528 - L1MA9 LINE L1 -1 6311 6221 744 152 27 51 chr4 31067828 31067986 -171260361 - L1MA9 LINE L1 -137 6154 5991 14837 211 32 39 chr4 31068741 31071580 -171256767 - L1PA15-16 LINE L1 -1823 5026 2167 219 36 0 0 chr4 31071580 31071608 -171256739 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1698 163 4 0 chr4 31071616 31071886 -171256461 - AluSx SINE Alu -39 273 3 14837 211 32 39 chr4 31071886 31073037 -171255310 - L1PA15-16 LINE L1 -4689 2160 1084 2328 126 22 0 chr4 31073037 31073393 -171254954 - THE1B LTR MaLR 0 364 1 14837 211 32 39 chr4 31073393 31074461 -171253886 - L1PA15-16 LINE L1 -5765 1084 10 207 0 0 0 chr4 31074464 31074487 -171253860 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 7663 81 22 0 chr4 31075714 31077549 -171250798 - L1PA7 LINE L1 -1 6153 4289 305 369 34 73 chr4 31077833 31078066 -171250281 - L2 LINE L2 -17 3255 3032 29 0 0 0 chr4 31078151 31078180 -171250167 + AT_rich Low_complexity Low_complexity 1 29 0 297 307 121 62 chr4 31078203 31078460 -171249887 - MLT1J2 LTR MaLR -115 335 64 1915 157 0 7 chr4 31078895 31079200 -171249147 + AluJo SINE Alu 1 303 -9 1028 207 31 22 chr4 31079203 31079430 -171248917 + MLT1C LTR MaLR 191 419 -48 25 0 0 0 chr4 31079650 31079675 -171248672 + AT_rich Low_complexity Low_complexity 1 25 0 296 255 39 0 chr4 31080106 31080259 -171248088 + GA-rich Low_complexity Low_complexity 2 160 0 274 340 34 20 chr4 31080879 31081026 -171247321 + MLT1K LTR MaLR 272 420 -168 180 385 0 11 chr4 31081678 31081769 -171246578 - L2 LINE L2 -2 3311 3222 306 194 0 0 chr4 31081873 31081935 -171246412 + (TATG)n Simple_repeat Simple_repeat 3 64 0 2077 106 0 26 chr4 31081936 31082238 -171246109 - AluY SINE Alu -17 294 1 385 40 66 0 chr4 31082339 31082415 -171245932 + (TA)n Simple_repeat Simple_repeat 1 81 0 2026 134 3 0 chr4 31082415 31082699 -171245648 - AluSx SINE Alu -26 286 2 1153 274 141 18 chr4 31083655 31084158 -171244189 - L1ME3 LINE L1 -7 6155 5591 370 82 0 0 chr4 31084811 31084860 -171243487 - MADE1 DNA Mariner -29 51 3 1349 121 232 11 chr4 31084919 31085199 -171243148 - MER61A LTR ERV1 -1 342 1 1218 332 72 25 chr4 31085898 31086618 -171241729 + HERV16 LTR ERVL 690 1443 -3553 207 0 0 0 chr4 31086817 31086840 -171241507 + (CATA)n Simple_repeat Simple_repeat 4 26 0 1793 331 46 36 chr4 31086854 31088028 -171240319 + HERV16 LTR ERVL 1697 2914 -2082 433 115 52 0 chr4 31088028 31088124 -171240223 + (TA)n Simple_repeat Simple_repeat 2 102 0 356 336 12 37 chr4 31088171 31088439 -171239908 + HERV16 LTR ERVL 2976 3291 -2473 308 336 0 0 chr4 31088429 31088536 -171239811 + HERV16 LTR ERVL 4629 4735 -1029 * 189 191 43 85 chr4 31088550 31088597 -171239750 + L3 LINE CR1 1295 1339 -238 514 341 28 28 chr4 31088610 31088935 -171239412 + HERV16 LTR ERVL 4816 5140 -624 1094 255 24 32 chr4 31088998 31089339 -171239008 + MLT1A1 LTR MaLR 1 338 -27 330 293 36 14 chr4 31089430 31089570 -171238777 + HERV16 LTR ERVL 4790 4932 -64 682 318 58 58 chr4 31089583 31090029 -171238318 + LTR16B LTR ERVL 6 451 -13 22 0 0 0 chr4 31090267 31090289 -171238058 + AT_rich Low_complexity Low_complexity 1 22 0 240 167 0 0 chr4 31090755 31090803 -171237544 + (TA)n Simple_repeat Simple_repeat 1 48 0 970 101 0 7 chr4 31090877 31091015 -171237332 - MER50 LTR ERV1 -131 603 467 279 0 0 0 chr4 31091016 31091047 -171237300 + (GA)n Simple_repeat Simple_repeat 2 32 0 1317 173 75 25 chr4 31091247 31091530 -171236817 - LTR8A LTR ERV1 -2 725 406 1737 131 6 59 chr4 31091667 31091987 -171236360 + MER50 LTR ERV1 297 599 -135 246 62 0 0 chr4 31091987 31092019 -171236328 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 1496 123 9 4 chr4 31092030 31092258 -171236089 - LTR8A LTR ERV1 -236 491 263 898 265 111 31 chr4 31092695 31093192 -171235155 - L1ME1 LINE L1 -46 6120 5664 1762 177 3 6 chr4 31093192 31093503 -171234844 + AluJb SINE Alu 1 310 -2 898 265 111 31 chr4 31093503 31094833 -171233514 - L1ME1 LINE L1 -502 5664 4075 39 0 0 0 chr4 31095132 31095171 -171233176 + AT_rich Low_complexity Low_complexity 1 39 0 22 0 0 0 chr4 31095365 31095387 -171232960 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chr4 31096670 31096705 -171231642 + AT_rich Low_complexity Low_complexity 1 35 0 2135 118 7 0 chr4 31097665 31097969 -171230378 - AluSx SINE Alu -6 306 1 25 0 0 0 chr4 31099119 31099144 -171229203 + AT_rich Low_complexity Low_complexity 1 25 0 323 284 11 0 chr4 31099353 31099448 -171228899 + L1MDa LINE L1 10 105 -6435 392 0 30 45 chr4 31099464 31099530 -171228817 + (GAAA)n Simple_repeat Simple_repeat 2 66 0 2025 117 0 0 chr4 31099993 31100274 -171228073 - AluSc SINE Alu -14 295 15 1293 191 12 12 chr4 31102226 31102483 -171225864 - L1MB1 LINE L1 -1 6167 5911 192 125 0 0 chr4 31102717 31102749 -171225598 + (TC)n Simple_repeat Simple_repeat 1 32 0 209 208 0 19 chr4 31102967 31103020 -171225327 + (TTG)n Simple_repeat Simple_repeat 1 52 0 367 280 178 0 chr4 31105937 31106212 -171222135 - MER69 DNA AcHobo -164 2362 2039 1057 308 121 10 chr4 31106214 31106695 -171221652 - MER69 DNA AcHobo -587 639 106 540 235 251 22 chr4 31107546 31107725 -171220622 - MER58A DNA MER1_type -4 220 1 961 195 284 3 chr4 31107835 31108127 -171220220 + MLT1A2 LTR MaLR 1 374 0 11968 231 21 26 chr4 31109282 31113714 -171214633 - L1PA16 LINE L1 -9 6860 2463 7241 199 58 24 chr4 31113699 31115321 -171213026 - L1PA16 LINE L1 -4777 2072 2 * 23 0 0 0 chr4 31116484 31116507 -171211840 + AT_rich Low_complexity Low_complexity 1 23 0 203 170 19 38 chr4 31117013 31117066 -171211281 + (CAAA)n Simple_repeat Simple_repeat 1 52 0 1096 79 0 7 chr4 31117276 31117416 -171210931 - AluSq/x SINE Alu -174 139 1 1016 175 133 45 chr4 31117416 31117526 -171210821 - L1MCa LINE L1 -4157 2269 2170 391 173 0 25 chr4 31117526 31117607 -171210740 - MADE1 DNA Mariner -1 79 1 1016 175 133 45 chr4 31117607 31117805 -171210542 - L1MCa LINE L1 -4256 2170 1934 347 189 126 0 chr4 31117860 31117971 -171210376 - AluSc SINE Alu -20 279 155 246 128 0 0 chr4 31118093 31118132 -171210215 + (TA)n Simple_repeat Simple_repeat 1 39 0 1902 161 0 0 chr4 31118146 31118425 -171209922 - AluSx SINE Alu -30 282 4 6490 199 71 39 chr4 31118428 31120226 -171208121 - L1MCa LINE L1 -4494 1992 3 181 292 0 0 chr4 31120443 31120491 -171207856 + MIR SINE MIR 125 172 -90 2289 109 0 0 chr4 31121329 31121631 -171206716 - AluY SINE Alu -7 304 3 266 241 93 56 chr4 31121941 31122049 -171206298 + LTR67 LTR ERVL 429 540 -17 379 326 44 15 chr4 31122421 31122556 -171205791 - MLT1J2 LTR MaLR -238 212 74 * 912 121 0 0 chr4 31122552 31122684 -171205663 - MLT2A1 LTR ERVL -312 132 1 826 208 60 16 chr4 31123371 31123554 -171204793 - MER2 DNA MER2_type 0 345 155 21 36 0 0 chr4 31124509 31124537 -171203810 + AT_rich Low_complexity Low_complexity 1 28 0 549 163 0 78 chr4 31126268 31126397 -171201950 - L1ME LINE L1 -458 5706 5588 247 312 68 51 chr4 31126439 31126750 -171201597 - L1ME LINE L1 -267 5854 5539 280 376 119 29 chr4 31126815 31127025 -171201322 - L3 LINE CR1 -9 1568 1340 1047 199 104 128 chr4 31127477 31127856 -171200491 + MLT2D LTR ERVL 2 372 -42 369 0 0 0 chr4 31127856 31127897 -171200450 + (CA)n Simple_repeat Simple_repeat 2 42 0 1047 199 104 128 chr4 31127897 31127940 -171200407 + MLT2D LTR ERVL 372 414 0 195 263 35 18 chr4 31129163 31129220 -171199127 + L2 LINE L2 3255 3312 -1 183 351 13 13 chr4 31129245 31129322 -171199025 - MIR SINE MIR -130 132 56 1879 68 38 4 chr4 31131954 31132217 -171196130 - AluY SINE Alu -21 290 19 184 395 32 0 chr4 31132525 31132649 -171195698 - L2 LINE L2 -5 3308 3181 2204 90 3 10 chr4 31133055 31133354 -171194993 - AluSp SINE Alu -16 297 1 384 263 95 29 chr4 31133781 31133918 -171194429 - MIR SINE MIR -64 198 53 26 0 0 0 chr4 31135299 31135325 -171193022 + AT_rich Low_complexity Low_complexity 1 26 0 230 346 58 0 chr4 31135594 31135698 -171192649 - L2 LINE L2 -4 3309 3200 21 36 0 0 chr4 31135840 31135868 -171192479 + AT_rich Low_complexity Low_complexity 1 28 0 333 343 118 39 chr4 31135905 31136243 -171192104 - L2 LINE L2 -8 3264 2900 2332 69 0 20 chr4 31136778 31137082 -171191265 - AluY SINE Alu -13 298 1 188 297 31 16 chr4 31137583 31137647 -171190700 + MIR SINE MIR 36 100 -108 302 247 11 43 chr4 31137877 31137970 -171190377 + CT-rich Low_complexity Low_complexity 1 90 0 200 280 27 40 chr4 31137973 31138048 -171190299 + MIR3 SINE MIR 125 198 -10 270 291 84 67 chr4 31138693 31138872 -171189475 + MIR SINE MIR 37 218 -44 22 35 0 0 chr4 31141047 31141076 -171187271 + AT_rich Low_complexity Low_complexity 1 29 0 223 311 54 0 chr4 31141165 31141239 -171187108 - MIR SINE MIR -60 148 71 23 33 0 0 chr4 31141391 31141421 -171186926 + AT_rich Low_complexity Low_complexity 1 30 0 466 289 109 6 chr4 31141676 31141832 -171186515 + MIR SINE MIR 47 218 -44 262 255 11 53 chr4 31142265 31142359 -171185988 - MER103 DNA DNA -75 91 2 384 350 43 6 chr4 31142515 31142678 -171185669 + MIR SINE MIR 45 213 -49 348 64 0 0 chr4 31142790 31142837 -171185510 + (TTCC)n Simple_repeat Simple_repeat 3 49 0 2112 107 0 41 chr4 31142838 31143157 -171185190 - AluSp SINE Alu -7 306 1 9947 187 29 29 chr4 31144303 31147779 -171180568 - L1MA6 LINE L1 0 6482 3012 4302 254 43 41 chr4 31147779 31149613 -171178734 - L1MA6 LINE L1 -3950 2378 539 251 328 41 25 chr4 31149644 31149766 -171178581 - L1MA6 LINE L1 -5517 732 609 830 311 33 46 chr4 31150013 31150470 -171177877 - L1MA6 LINE L1 -5504 745 295 227 366 0 0 chr4 31150668 31150750 -171177597 - L2 LINE L2 -3 3269 3188 226 244 0 0 chr4 31150914 31150955 -171177392 - L2 LINE L2 -214 3058 3018 2341 69 0 20 chr4 31150996 31151301 -171177046 + AluY SINE Alu 1 299 -12 615 341 41 46 chr4 31152169 31152796 -171175551 - HERVL LTR ERVL -2499 2497 1855 970 9 0 18 chr4 31152973 31153083 -171175264 - AluSc SINE Alu -181 128 21 1429 206 36 46 chr4 31154565 31154977 -171173370 - Tigger2 DNA MER2_type -329 2389 1982 * 5050 150 48 3 chr4 31154948 31155815 -171172532 - Tigger2 DNA MER2_type -510 2208 1303 1521 163 6 59 chr4 31156087 31156407 -171171940 + MER50 LTR ERV1 297 599 -135 246 62 0 0 chr4 31156407 31156439 -171171908 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 3088 136 16 2 chr4 31156450 31156934 -171171413 - LTR8A LTR ERV1 -236 491 1 332 239 0 106 chr4 31157719 31157832 -171170515 + Tigger2 DNA MER2_type 2608 2708 -10 191 266 16 16 chr4 31157909 31157973 -171170374 + MIR SINE MIR 65 128 -134 202 252 108 54 chr4 31158242 31158353 -171169994 + MIR SINE MIR 125 241 -21 205 297 50 40 chr4 31158373 31158474 -171169873 + L3 LINE CR1 1211 1312 -265 621 298 109 42 chr4 31159231 31159634 -171168713 + L1MDa LINE L1 33 462 -6078 256 293 17 0 chr4 31159837 31159895 -171168452 + L1MDa LINE L1 811 869 -5671 1181 205 79 48 chr4 31160174 31160594 -171167753 + L1MDa LINE L1 1025 1457 -5086 2331 63 3 19 chr4 31160786 31161101 -171167246 - AluY SINE Alu -1 310 1 24 53 0 0 chr4 31161529 31161567 -171166780 + AT_rich Low_complexity Low_complexity 1 38 0 3355 291 32 33 chr4 31162196 31163397 -171164950 - L1M2a LINE L1 -5962 1206 7 271 196 0 18 chr4 31163404 31163460 -171164887 + MER34 LTR ERV1 176 230 -312 772 288 93 21 chr4 31163564 31163788 -171164559 + MER90 LTR ERV1 41 306 -269 3780 140 22 64 chr4 31163788 31164509 -171163838 - LTR8 LTR ERV1 0 691 1 772 288 93 21 chr4 31164509 31164669 -171163678 + MER90 LTR ERV1 306 453 -122 21 36 0 0 chr4 31164857 31164885 -171163462 + AT_rich Low_complexity Low_complexity 1 28 0 333 0 0 0 chr4 31165792 31165829 -171162518 + (TG)n Simple_repeat Simple_repeat 2 38 0 263 312 46 18 chr4 31165913 31166022 -171162325 - MLT1J LTR MaLR -344 167 56 4831 115 3 0 chr4 31166732 31167438 -171160909 - L1PA12 LINE L1 0 6168 5461 975 259 94 49 chr4 31167441 31168217 -171160130 - L1M1 LINE L1 -3966 3599 2789 366 247 62 90 chr4 31168333 31168428 -171159919 - MLT1B LTR MaLR -217 173 84 1950 156 7 0 chr4 31168428 31168735 -171159612 + AluSq SINE Alu 2 310 -3 366 247 62 90 chr4 31168735 31168817 -171159530 - MLT1B LTR MaLR -306 84 1 843 272 42 10 chr4 31168884 31169187 -171159160 + MLT1D LTR MaLR 137 453 -52 2673 116 0 17 chr4 31169199 31169612 -171158735 - L1PA5 LINE L1 0 6154 5749 5763 134 10 14 chr4 31169737 31170126 -171158221 - L1PA13 LINE L1 -10 6153 5764 1324 151 24 114 chr4 31170126 31170458 -171157889 - AluYb8 SINE Alu -16 302 1 5763 134 10 14 chr4 31170458 31170863 -171157484 - L1PA13 LINE L1 -399 5764 5358 1746 93 0 0 chr4 31170863 31171078 -171157269 - AluSc SINE Alu -11 298 84 5763 134 10 14 chr4 31171078 31171333 -171157014 - L1PA13 LINE L1 -805 5358 5104 2881 205 5 2 chr4 31171436 31172007 -171156340 + L1P LINE L1 2407 2979 -3167 4316 201 7 3 chr4 31172010 31172886 -171155461 + L1P LINE L1 3778 4656 -1490 1200 109 0 60 chr4 31172886 31173069 -171155278 + AluSq SINE Alu 1 172 -141 797 157 0 0 chr4 31173069 31173184 -171155163 + AluSc SINE Alu 138 252 -57 970 123 0 0 chr4 31173185 31173315 -171155032 + AluSg/x SINE Alu 149 278 -34 861 129 0 7 chr4 31173340 31173479 -171154868 + L1P LINE L1 4644 4781 -1365 181 0 0 65 chr4 31174052 31174083 -171154264 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1440 175 0 16 chr4 31174099 31174356 -171153991 + L1MB3 LINE L1 5579 5831 -352 2192 97 0 59 chr4 31174357 31174678 -171153669 + AluSq SINE Alu 1 302 -11 1607 116 0 0 chr4 31174960 31175176 -171153171 - AluSg/x SINE Alu -1 311 96 38695 93 11 3 chr4 31175276 31180484 -171147863 - L1P LINE L1 -750 5396 151 806 129 21 0 chr4 31230486 31230626 -171097721 - L1PA5 LINE L1 -374 5780 5638 1364 281 58 30 chr4 31230630 31231161 -171097186 + MER74B LTR ERVL 66 611 -11 2476 243 75 3 chr4 31233006 31233717 -171094630 - L1MB8 LINE L1 -3 6175 5414 363 284 0 49 chr4 31233974 31234076 -171094271 - MER5A DNA MER1_type -55 134 38 225 146 49 0 chr4 31234176 31234217 -171094130 - MER105 DNA DNA -159 45 3 216 0 0 0 chr4 31236138 31236162 -171092185 + (A)n Simple_repeat Simple_repeat 1 24 0 191 88 29 0 chr4 31237182 31237216 -171091131 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 219 122 49 0 chr4 31237829 31237870 -171090477 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 1030 222 10 28 chr4 31238064 31238465 -171089882 - MER31B LTR ERV1 -30 436 2 202 264 0 0 chr4 31238623 31238676 -171089671 - MIR SINE MIR -26 236 184 1246 113 72 10 chr4 31239912 31240106 -171088241 - AluSc SINE Alu -20 289 84 918 221 57 94 chr4 31240157 31240560 -171087787 + MLT1B LTR MaLR 1 388 -2 268 75 0 25 chr4 31241310 31241350 -171086997 - MLT1I LTR MaLR 0 409 371 1056 106 129 18 chr4 31241396 31241566 -171086781 + MSTA LTR MaLR 5 193 -235 2945 180 37 28 chr4 31242692 31243375 -171084972 + L1MA7 LINE L1 5596 6284 -7 31 0 0 0 chr4 31243563 31243594 -171084753 + AT_rich Low_complexity Low_complexity 1 31 0 562 322 26 47 chr4 31244624 31244874 -171083473 + L2 LINE L2 2204 2447 -867 1429 231 22 22 chr4 31244874 31245238 -171083109 - MLT1A1 LTR MaLR 0 365 2 562 322 26 47 chr4 31245238 31245329 -171083018 + L2 LINE L2 2447 2538 -776 2370 237 36 26 chr4 31246346 31246950 -171081397 - MER90 LTR ERV1 -4 610 1 3075 158 19 23 chr4 31247266 31247886 -171080461 - L1MA7 LINE L1 -2 6289 5672 2351 123 22 3 chr4 31248338 31248695 -171079652 - THE1B LTR MaLR 0 364 1 230 361 83 37 chr4 31248907 31249015 -171079332 - L2 LINE L2 -4 3268 3156 1546 200 50 9 chr4 31249585 31250048 -171078299 - LTR53 LTR ERVL -12 507 1 255 378 87 5 chr4 31250947 31251143 -171077204 + L2 LINE L2 2463 2674 -640 271 266 94 47 chr4 31251154 31251282 -171077065 + L2 LINE L2 3180 3313 0 653 203 7 27 chr4 31251638 31251786 -171076561 + MER105 DNA DNA 1 145 -59 306 266 0 0 chr4 31251798 31251877 -171076470 + MER105 DNA DNA 123 201 -3 979 120 25 0 chr4 31253653 31253811 -171074536 - AluY SINE Alu -148 163 2 380 310 28 21 chr4 31254272 31254414 -171073933 - MIR SINE MIR -1 261 119 949 213 81 110 chr4 31254414 31254779 -171073568 + MLT1A2 LTR MaLR 1 356 -18 324 352 19 0 chr4 31254798 31254906 -171073441 - MIR SINE MIR -140 122 13 1651 116 0 0 chr4 31255294 31255519 -171072828 - AluSg/x SINE Alu -10 300 76 24 0 0 0 chr4 31255520 31255544 -171072803 + AT_rich Low_complexity Low_complexity 1 24 0 490 305 12 6 chr4 31256499 31256663 -171071684 - MER69A DNA AcHobo -7 170 6 307 190 9 103 chr4 31258038 31258154 -171070193 - MLT1J1 LTR MaLR -321 125 21 290 245 32 21 chr4 31258188 31258282 -171070065 - MLT1H1 LTR MaLR 0 590 496 296 132 0 0 chr4 31258304 31258357 -171069990 - LTR19A LTR ERV1 0 486 434 348 395 15 36 chr4 31258877 31259211 -171069136 + L1M3a LINE L1 1614 1940 -5546 3206 262 23 34 chr4 31259828 31260028 -171068319 + L1M3a LINE L1 1898 2099 -5466 1683 188 0 23 chr4 31260028 31260336 -171068011 + AluJb SINE Alu 1 301 -11 3206 262 23 34 chr4 31260336 31261317 -171067030 + L1M3a LINE L1 2099 3066 -4499 759 151 14 50 chr4 31261979 31262118 -171066229 + FRAM SINE Alu 25 158 -18 28 0 0 0 chr4 31263250 31263278 -171065069 + AT_rich Low_complexity Low_complexity 1 28 0 728 244 76 5 chr4 31263468 31263665 -171064682 + MLT1D LTR MaLR 286 496 -9 1010 65 30 6 chr4 31264254 31264422 -171063925 + (TTTC)n Simple_repeat Simple_repeat 4 175 0 416 267 60 84 chr4 31265215 31265500 -171062847 - LTR16A1 LTR ERVL -179 278 1 368 283 14 0 chr4 31266306 31266444 -171061903 - ERVL LTR ERVL -1747 4017 3878 784 216 6 28 chr4 31266449 31266625 -171061722 + AluJo SINE Alu 125 296 -16 2426 120 0 11 chr4 31266657 31267023 -171061324 - THE1B LTR MaLR -2 362 1 991 147 20 10 chr4 31267023 31267227 -171061120 - THE1B-int LTR MaLR 0 1580 1375 207 273 68 0 chr4 31268657 31268701 -171059646 - L2 LINE L2 -22 3291 3245 186 277 0 0 chr4 31269756 31269803 -171058544 + MIR SINE MIR 216 262 0 491 250 104 10 chr4 31269950 31270142 -171058205 - MLT1H1 LTR MaLR -14 541 332 2230 81 3 0 chr4 31271401 31271698 -171056649 + AluY SINE Alu 12 309 -2 533 331 8 52 chr4 31272082 31272330 -171056017 - MIR SINE MIR -19 243 7 385 178 0 14 chr4 31272386 31272459 -171055888 - MLT1G LTR MaLR 0 590 519 298 257 97 35 chr4 31272552 31272696 -171055651 - MLT1I LTR MaLR -245 285 133 449 190 0 0 chr4 31274327 31274406 -171053941 - L1PB1 LINE L1 -291 5860 5782 235 154 39 0 chr4 31274394 31274446 -171053901 + L1MC4 LINE L1 6653 6706 -1336 * 749 70 0 0 chr4 31274450 31274550 -171053797 + L1PB1 LINE L1 5875 5974 -177 361 298 0 0 chr4 31274784 31274878 -171053469 - MLT1I LTR MaLR -229 180 87 324 247 12 0 chr4 31275277 31275358 -171052989 + MER99 DNA DNA 617 698 -130 45 0 0 0 chr4 31275364 31275409 -171052938 + AT_rich Low_complexity Low_complexity 1 45 0 273 246 14 0 chr4 31275546 31275615 -171052732 + T-rich Low_complexity Low_complexity 4 73 0 30 0 0 0 chr4 31275624 31275654 -171052693 + AT_rich Low_complexity Low_complexity 1 30 0 24 53 0 0 chr4 31277355 31277393 -171050954 + AT_rich Low_complexity Low_complexity 1 38 0 28 71 0 0 chr4 31278204 31278260 -171050087 + AT_rich Low_complexity Low_complexity 1 56 0 180 0 0 0 chr4 31278428 31278448 -171049899 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 255 289 155 0 chr4 31279108 31279205 -171049142 + L2 LINE L2 3199 3310 -3 440 357 40 32 chr4 31279216 31279468 -171048879 + L2 LINE L2 2828 3081 -232 2277 66 3 41 chr4 31279746 31280066 -171048281 + AluY SINE Alu 1 308 -3 214 273 169 13 chr4 31281103 31281180 -171047167 + L2 LINE L2 3225 3313 0 21 0 0 0 chr4 31282730 31282751 -171045596 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr4 31284484 31284511 -171043836 + AT_rich Low_complexity Low_complexity 1 27 0 453 319 53 18 chr4 31285392 31285561 -171042786 - MLT1J2 LTR MaLR -62 388 214 484 287 8 0 chr4 31285565 31285687 -171042660 - MLT1J1 LTR MaLR -323 123 1 377 171 14 0 chr4 31286536 31286606 -171041741 - L1MA6 LINE L1 -174 6126 6056 * 547 142 113 3 chr4 31286599 31286717 -171041630 + L1MA6 LINE L1 6152 6288 -24 198 0 0 0 chr4 31286824 31286846 -171041501 + (TA)n Simple_repeat Simple_repeat 2 23 0 3955 41 2 0 chr4 31286846 31287329 -171041018 - L1PA5 LINE L1 -1 6153 5670 1632 124 16 8 chr4 31287330 31287588 -171040759 + THE1C LTR MaLR 116 375 0 22 35 0 0 chr4 31287840 31287869 -171040478 + AT_rich Low_complexity Low_complexity 1 29 0 283 337 189 34 chr4 31288215 31288986 -171039361 + L2 LINE L2 1890 2780 -534 1461 109 0 5 chr4 31289408 31289618 -171038729 + THE1C LTR MaLR 139 347 -28 288 0 0 0 chr4 31290783 31290815 -171037532 + (TG)n Simple_repeat Simple_repeat 2 33 0 207 0 0 0 chr4 31292223 31292246 -171036101 + (TA)n Simple_repeat Simple_repeat 1 23 0 272 170 0 5 chr4 31292247 31292331 -171036016 - THE1B LTR MaLR -248 127 1 247 327 117 12 chr4 31292381 31292543 -171035804 - MIR SINE MIR -48 214 36 498 219 36 55 chr4 31292586 31292805 -171035542 - L1MC5 LINE L1 -46 7915 7701 730 189 15 0 chr4 31292826 31292958 -171035389 - Tigger2 DNA MER2_type -10 2708 2575 3931 161 57 52 chr4 31292975 31294089 -171034258 + L1PA16 LINE L1 4984 6099 -67 234 0 0 0 chr4 31294832 31294858 -171033489 + (TA)n Simple_repeat Simple_repeat 2 27 0 189 0 0 0 chr4 31294857 31294878 -171033469 + (TG)n Simple_repeat Simple_repeat 2 22 0 * 204 67 0 0 chr4 31298200 31298230 -171030117 + (TA)n Simple_repeat Simple_repeat 2 31 0 283 311 54 0 chr4 31298610 31298684 -171029663 + L2 LINE L2 3232 3309 -4 323 299 65 92 chr4 31299283 31299544 -171028803 + MIR SINE MIR 3 256 -6 329 157 29 10 chr4 31299911 31300013 -171028334 + GA-rich Low_complexity Low_complexity 2 105 0 280 353 21 26 chr4 31301632 31301822 -171026525 - MIR SINE MIR -71 191 3 276 30 0 0 chr4 31301964 31301997 -171026350 + (CA)n Simple_repeat Simple_repeat 2 34 0 1263 177 15 57 chr4 31302013 31302278 -171026069 - AluJo SINE Alu -25 287 34 1837 93 30 36 chr4 31302445 31302746 -171025601 - THE1C LTR MaLR -76 299 1 230 314 108 10 chr4 31302771 31302873 -171025474 - MLT1I LTR MaLR -197 212 101 398 271 77 45 chr4 31302995 31303242 -171025105 - L1ME LINE L1 -648 5516 5262 1465 172 35 56 chr4 31303413 31303732 -171024615 + AluJo SINE Alu 1 312 0 762 296 107 26 chr4 31304068 31305080 -171023267 - L1ME LINE L1 -1644 4502 3409 226 230 130 25 chr4 31305399 31305560 -171022787 - L1ME LINE L1 -3191 2955 2778 326 301 7 37 chr4 31305601 31305737 -171022610 + MER94 DNA DNA 1 132 -2 238 222 0 0 chr4 31305770 31305824 -171022523 - L1ME LINE L1 -3447 2699 2646 499 321 38 5 chr4 31306195 31306379 -171021968 + LTR33 LTR ERVL 32 221 -300 1478 173 21 25 chr4 31306986 31307292 -171021055 + AluJo SINE Alu 1 305 0 329 344 133 11 chr4 31308265 31308445 -171019902 + MIR3 SINE MIR 1 202 -6 230 258 75 69 chr4 31308875 31309034 -171019313 + MLT1J2 LTR MaLR 264 423 -27 241 216 420 0 chr4 31309589 31309677 -171018670 + L2 LINE L2 3181 3305 -8 224 30 30 0 chr4 31310149 31310182 -171018165 + (TG)n Simple_repeat Simple_repeat 2 35 0 1750 191 18 6 chr4 31310209 31310544 -171017803 - MER44D DNA MER2_type 0 609 1 283 200 0 0 chr4 31311547 31311602 -171016745 + L1MA6 LINE L1 3098 3152 -4413 * 2249 232 51 3 chr4 31311598 31312210 -171016137 + L1MA6 LINE L1 3798 4438 -3127 5155 165 26 34 chr4 31312282 31314291 -171014056 + L1MA6 LINE L1 5725 7718 -1 22 35 0 0 chr4 31314357 31314386 -171013961 + AT_rich Low_complexity Low_complexity 1 29 0 1213 274 67 42 chr4 31314574 31315008 -171013339 + LTR40a LTR ERVL 70 514 -5 1980 164 0 0 chr4 31315987 31316285 -171012062 + AluSx SINE Alu 6 303 -9 21 36 0 0 chr4 31316597 31316625 -171011722 + AT_rich Low_complexity Low_complexity 1 28 0 438 20 0 0 chr4 31316702 31316753 -171011594 + (TG)n Simple_repeat Simple_repeat 2 52 0 27 49 0 0 chr4 31316786 31316827 -171011520 + AT_rich Low_complexity Low_complexity 1 41 0 963 216 11 82 chr4 31317564 31317846 -171010501 - MLT1A1 LTR MaLR -103 262 1 282 242 15 15 chr4 31319280 31319346 -171009001 - MER81 DNA DNA -44 70 5 1148 128 5 35 chr4 31319987 31320190 -171008157 + AluSx SINE Alu 1 197 -115 893 163 0 14 chr4 31320350 31320497 -171007850 + AluSg/x SINE Alu 131 275 -37 204 40 0 0 chr4 31320503 31320528 -171007819 + (TTAA)n Simple_repeat Simple_repeat 2 26 0 3410 179 18 5 chr4 31320546 31321176 -171007171 + L1MB1 LINE L1 5477 6114 -75 1251 204 129 67 chr4 31321189 31321592 -171006755 + MSTB1 LTR MaLR 5 432 0 805 174 14 82 chr4 31321597 31321804 -171006543 + L1MA10 LINE L1 6124 6316 -18 25 31 0 0 chr4 31321802 31321834 -171006513 + AT_rich Low_complexity Low_complexity 1 32 0 * 2024 128 10 0 chr4 31322739 31323036 -171005311 - AluSx SINE Alu -12 300 1 25 51 0 0 chr4 31323103 31323142 -171005205 + AT_rich Low_complexity Low_complexity 1 39 0 1448 207 87 7 chr4 31323142 31323451 -171004896 + MER2 DNA MER2_type 2 335 -10 216 0 0 0 chr4 31324664 31324688 -171003659 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 370 292 29 53 chr4 31325637 31325704 -171002643 + MLT1J LTR MaLR 1 68 -443 1172 254 104 29 chr4 31325704 31326185 -171002162 + MLT2B1 LTR ERVL 2 518 -2 370 292 29 53 chr4 31326185 31326288 -171002059 + MLT1J LTR MaLR 68 167 -344 183 80 0 0 chr4 31326984 31327009 -171001338 + (TGAA)n Simple_repeat Simple_repeat 4 28 0 360 43 0 0 chr4 31327239 31327285 -171001062 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 23 0 0 0 chr4 31327891 31327914 -171000433 + AT_rich Low_complexity Low_complexity 1 23 0 323 313 33 20 chr4 31328241 31328391 -170999956 + MLT1I LTR MaLR 15 166 -243 929 211 88 32 chr4 31328540 31328578 -170999769 - MSTA LTR MaLR 0 428 394 2380 63 0 0 chr4 31328578 31328879 -170999468 + AluY SINE Alu 1 301 -10 929 211 88 32 chr4 31328879 31329091 -170999256 - MSTA LTR MaLR -34 394 164 193 257 50 59 chr4 31329394 31329495 -170998852 - L2 LINE L2 -523 2791 2692 1910 155 0 7 chr4 31329898 31330202 -170998145 - AluSx SINE Alu -10 302 1 1922 165 129 5 chr4 31331386 31331767 -170996580 - MSTA LTR MaLR 0 428 1 332 325 57 45 chr4 31331849 31332006 -170996341 - MLT1K LTR MaLR -368 220 62 22 0 0 0 chr4 31332267 31332289 -170996058 + AT_rich Low_complexity Low_complexity 1 22 0 895 293 44 20 chr4 31332289 31332792 -170995555 + L2 LINE L2 2770 3280 -33 186 103 0 0 chr4 31332849 31332878 -170995469 + (TGAA)n Simple_repeat Simple_repeat 2 30 0 1854 160 10 0 chr4 31332979 31333286 -170995061 + AluSx SINE Alu 1 310 -2 2172 144 3 29 chr4 31335140 31335514 -170992833 - THE1B LTR MaLR 0 364 1 2312 236 8 8 chr4 31335645 31336165 -170992182 - MLT2B1 LTR ERVL 0 520 1 464 324 11 16 chr4 31337369 31337551 -170990796 + MIR SINE MIR 80 260 -2 1475 256 124 4 chr4 31337849 31338299 -170990048 - MLT1D LTR MaLR 0 505 2 891 278 48 11 chr4 31338852 31339125 -170989222 - LTR67 LTR ERVL -2 555 273 231 300 36 55 chr4 31340096 31340206 -170988141 + MIR SINE MIR 86 193 -69 1541 214 63 24 chr4 31340592 31340971 -170987376 - MSTD LTR MaLR -2 394 1 28 48 0 0 chr4 31341215 31341257 -170987090 + AT_rich Low_complexity Low_complexity 1 42 0 23 68 0 0 chr4 31341337 31341381 -170986966 + AT_rich Low_complexity Low_complexity 1 44 0 198 390 138 5 chr4 31341498 31341716 -170986631 + MIR SINE MIR 13 259 -3 29 0 0 0 chr4 31341718 31341747 -170986600 + AT_rich Low_complexity Low_complexity 1 29 0 345 320 22 31 chr4 31342456 31342683 -170985664 + GA-rich Low_complexity Low_complexity 1 225 0 269 194 0 28 chr4 31342935 31343007 -170985340 + (CATATA)n Simple_repeat Simple_repeat 3 72 0 23 33 0 0 chr4 31343552 31343582 -170984765 + AT_rich Low_complexity Low_complexity 1 30 0 250 371 28 28 chr4 31343762 31343905 -170984442 - MIR SINE MIR -115 147 5 2435 181 7 5 chr4 31345502 31345939 -170982408 - MER44D DNA MER2_type -36 569 77 22 56 0 0 chr4 31346537 31346573 -170981774 + AT_rich Low_complexity Low_complexity 1 36 0 1422 195 82 22 chr4 31346703 31347021 -170981326 - L1MC1 LINE L1 0 6333 5997 268 114 66 0 chr4 31347040 31347100 -170981247 - Alu SINE Alu -11 291 247 216 0 0 0 chr4 31347149 31347173 -170981174 + (TA)n Simple_repeat Simple_repeat 2 25 0 801 212 0 54 chr4 31347185 31347369 -170980978 - AluJb SINE Alu -30 282 109 282 143 0 0 chr4 31347808 31347857 -170980490 + (CA)n Simple_repeat Simple_repeat 2 50 0 291 200 0 47 chr4 31348081 31348166 -170980181 + CT-rich Low_complexity Low_complexity 3 83 0 297 323 24 16 chr4 31348663 31348787 -170979560 - MER5A DNA MER1_type -31 158 34 3409 266 40 45 chr4 31348982 31350430 -170977917 + L1MCb LINE L1 3 1417 -4851 337 234 203 16 chr4 31350477 31350605 -170977742 - MLT1J LTR MaLR -327 184 33 254 279 0 0 chr4 31352306 31352374 -170975973 + T-rich Low_complexity Low_complexity 1 68 0 383 356 151 28 chr4 31352981 31353413 -170974934 + L2 LINE L2 2364 2848 -466 189 314 220 25 chr4 31353705 31353823 -170974524 + L2 LINE L2 3173 3313 0 722 325 77 6 chr4 31353931 31354270 -170974077 + L2 LINE L2 2339 2701 -613 195 100 0 0 chr4 31354927 31354957 -170973390 + (TA)n Simple_repeat Simple_repeat 2 31 0 685 294 76 61 chr4 31354957 31355500 -170972847 + L2 LINE L2 2687 3244 -69 2275 162 30 16 chr4 31355500 31355939 -170972408 - MER65A LTR ERV1 0 445 1 685 294 76 61 chr4 31355939 31355983 -170972364 + L2 LINE L2 3244 3286 -27 378 0 0 0 chr4 31356925 31356967 -170971380 + (TG)n Simple_repeat Simple_repeat 2 43 0 596 211 16 0 chr4 31357192 31357320 -170971027 - MER39 LTR ERV1 -21 686 557 * 1560 194 15 56 chr4 31357318 31357659 -170970688 + MER7A DNA MER2_type 21 345 -1 24 0 0 0 chr4 31358218 31358242 -170970105 + AT_rich Low_complexity Low_complexity 1 24 0 1535 84 21 8 chr4 31358334 31358571 -170969776 - L1PA5 LINE L1 -11 6143 5904 255 368 40 16 chr4 31359098 31359223 -170969124 + MIR SINE MIR 11 138 -124 996 207 153 18 chr4 31360374 31360649 -170967698 + L1MB8 LINE L1 5857 6168 -16 229 226 0 0 chr4 31360800 31360853 -170967494 + Charlie8 DNA MER1_type 74 126 -2291 398 101 14 0 chr4 31360860 31360929 -170967418 + (GGAA)n Simple_repeat Simple_repeat 2 71 0 8512 127 34 37 chr4 31361271 31362687 -170965660 - THE1B-int LTR MaLR -169 1411 1 2372 119 14 3 chr4 31362687 31363047 -170965300 - THE1B LTR MaLR 0 364 1 1277 169 9 0 chr4 31363146 31363359 -170964988 + AluSg/x SINE Alu 81 295 -17 639 349 80 27 chr4 31363527 31364005 -170964342 - ERVL LTR ERVL -2207 3557 3055 388 368 33 4 chr4 31364218 31364535 -170963812 - ERVL LTR ERVL -2219 2777 2446 464 328 58 6 chr4 31364703 31364877 -170963470 - ERVL LTR ERVL -3357 2407 2225 731 313 52 48 chr4 31364939 31365440 -170962907 - ERVL LTR ERVL -2905 2091 1589 1332 364 45 35 chr4 31365446 31365676 -170962671 - ERVL LTR ERVL -3511 1485 1259 640 229 60 60 chr4 31365676 31365894 -170962453 + MER20 DNA MER1_type 1 218 -1 1332 364 45 35 chr4 31365894 31366662 -170961685 - ERVL LTR ERVL -3737 1259 477 1345 246 86 25 chr4 31366718 31367113 -170961234 + LTR52 LTR ERVL 3 421 0 345 387 47 7 chr4 31367213 31367492 -170960855 - ERVL LTR ERVL -4706 290 1 881 265 88 20 chr4 31367516 31367822 -170960525 - LTR16A1 LTR ERVL -22 435 109 447 362 31 18 chr4 31367955 31368179 -170960168 - L2 LINE L2 -389 2925 2699 1313 215 85 74 chr4 31369873 31370334 -170958013 + MLT1C LTR MaLR 2 467 0 209 189 0 0 chr4 31370781 31370818 -170957529 + (TAGA)n Simple_repeat Simple_repeat 1 37 0 2128 230 77 4 chr4 31371282 31371803 -170956544 + L1MCa LINE L1 29 587 -5839 831 172 89 17 chr4 31371789 31371969 -170956378 + L1MC/D LINE L1 5414 5606 -727 * 303 307 38 46 chr4 31372139 31372377 -170955970 - L1MC5 LINE L1 -384 7577 7342 364 255 94 52 chr4 31372488 31372755 -170955592 - MLT1J LTR MaLR -2 509 232 310 143 0 0 chr4 31373055 31373104 -170955243 + MADE1 DNA Mariner 32 80 0 22 35 0 0 chr4 31373354 31373383 -170954964 + AT_rich Low_complexity Low_complexity 1 29 0 246 250 0 0 chr4 31374294 31374354 -170953993 + (TA)n Simple_repeat Simple_repeat 2 61 0 309 196 80 45 chr4 31374465 31374828 -170953519 + L1MA9 LINE L1 5341 5690 -622 2009 112 11 3 chr4 31374828 31375115 -170953232 - AluSc SINE Alu -20 289 1 309 196 80 45 chr4 31375115 31375571 -170952776 + L1MA9 LINE L1 5690 6276 -36 2349 74 0 13 chr4 31376398 31376710 -170951637 - AluY SINE Alu -3 308 1 206 125 0 25 chr4 31377491 31377531 -170950816 + (TA)n Simple_repeat Simple_repeat 2 40 0 270 233 0 27 chr4 31377561 31377634 -170950713 + (TA)n Simple_repeat Simple_repeat 1 71 0 23 33 0 0 chr4 31377917 31377947 -170950400 + AT_rich Low_complexity Low_complexity 1 30 0 189 0 0 0 chr4 31379202 31379223 -170949124 + (T)n Simple_repeat Simple_repeat 1 21 0 21 57 0 0 chr4 31379920 31379955 -170948392 + AT_rich Low_complexity Low_complexity 1 35 0 2032 178 90 2 chr4 31379963 31380385 -170947962 - L1PB4 LINE L1 -17 6139 5681 616 206 67 67 chr4 31380634 31380814 -170947533 + MLT1D LTR MaLR 12 191 -314 420 195 0 0 chr4 31381072 31381154 -170947193 - AluJ/FRAM SINE Alu -10 302 221 1847 173 3 3 chr4 31381292 31381621 -170946726 + L1PA15 LINE L1 5835 6163 -2 992 222 28 4 chr4 31381843 31382091 -170946256 + MER63 DNA MER1_type 809 1062 0 30 97 0 0 chr4 31382299 31382392 -170945955 + AT_rich Low_complexity Low_complexity 1 93 0 1317 259 37 12 chr4 31382911 31383313 -170945034 - L1ME1 LINE L1 -207 5959 5548 2973 90 5 0 chr4 31383316 31383726 -170944621 - L1PA7 LINE L1 0 6154 5743 6195 94 2 1 chr4 31383726 31384599 -170943748 + L1P LINE L1 1652 2525 -3621 265 301 27 6 chr4 31384596 31384714 -170943633 - L1ME1 LINE L1 -607 5557 5436 * 1306 258 164 48 chr4 31384821 31385214 -170943133 - L1ME1 LINE L1 -735 5427 5081 276 30 0 0 chr4 31385214 31385247 -170943100 + (TG)n Simple_repeat Simple_repeat 2 34 0 1306 258 164 48 chr4 31385247 31385838 -170942509 - L1ME1 LINE L1 -1081 5081 4324 23 86 0 0 chr4 31385966 31386024 -170942323 + AT_rich Low_complexity Low_complexity 1 58 0 1109 184 81 16 chr4 31386635 31386894 -170941453 + MER39 LTR ERV1 3 234 -419 1338 104 56 30 chr4 31386895 31387126 -170941221 + MER39 LTR ERV1 340 576 -131 933 247 83 106 chr4 31437141 31437668 -170890679 + MLT1E2 LTR MaLR 15 529 -97 240 86 0 0 chr4 31437792 31437827 -170890520 + (TG)n Simple_repeat Simple_repeat 2 36 0 1313 250 67 45 chr4 31437999 31438463 -170889884 - MLT1D LTR MaLR -27 478 5 934 331 22 12 chr4 31439337 31439686 -170888661 + MLT1G LTR MaLR 212 584 -11 729 147 62 0 chr4 31440177 31440306 -170888041 + FRAM SINE Alu 28 164 -12 26 0 0 0 chr4 31440434 31440460 -170887887 + AT_rich Low_complexity Low_complexity 1 26 0 200 372 124 13 chr4 31440590 31440824 -170887523 + L2 LINE L2 2970 3229 -84 22 0 0 0 chr4 31441852 31441874 -170886473 + AT_rich Low_complexity Low_complexity 1 22 0 33 0 0 0 chr4 31441975 31442008 -170886339 + AT_rich Low_complexity Low_complexity 1 33 0 362 254 17 51 chr4 31442356 31442474 -170885873 + MIR SINE MIR 133 246 -16 23 20 8 0 chr4 31442989 31443059 -170885288 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr4 31444483 31444506 -170883841 + AT_rich Low_complexity Low_complexity 1 23 0 187 316 110 15 chr4 31444784 31444920 -170883427 + MIR SINE MIR 2 150 -112 392 300 75 50 chr4 31445461 31445621 -170882726 - L2 LINE L2 0 3272 3109 731 253 50 84 chr4 31446018 31446378 -170881969 - L1ME1 LINE L1 -36 6130 5780 1209 83 30 0 chr4 31447026 31447194 -170881153 - L1PA7 LINE L1 -1 6153 5981 7501 85 0 23 chr4 31447194 31448701 -170879646 - L1PA7 LINE L1 -398 5756 4290 2145 116 3 3 chr4 31449062 31449354 -170878993 + AluSc SINE Alu 1 292 -17 188 306 41 0 chr4 31449596 31449645 -170878702 - L2 LINE L2 -269 3044 2994 1036 254 93 48 chr4 31452659 31453189 -170875158 - MLT1F1 LTR MaLR 0 567 13 192 356 75 29 chr4 31454535 31454709 -170873638 + MER5A DNA MER1_type 7 188 -1 1882 159 122 8 chr4 31454780 31455164 -170873183 - MSTA LTR MaLR 0 428 1 408 279 155 18 chr4 31455253 31455472 -170872875 - MIR SINE MIR -12 250 2 271 302 36 107 chr4 31456223 31456531 -170871816 + MLT1L LTR MaLR 167 452 -163 29 0 0 0 chr4 31456654 31456683 -170871664 + AT_rich Low_complexity Low_complexity 1 29 0 218 49 0 73 chr4 31457572 31457613 -170870734 + (A)n Simple_repeat Simple_repeat 1 38 0 22 35 0 0 chr4 31457717 31457746 -170870601 + AT_rich Low_complexity Low_complexity 1 29 0 2169 128 0 0 chr4 31459158 31459454 -170868893 + AluSg SINE Alu 1 296 -14 929 203 72 56 chr4 31459825 31460076 -170868271 - LTR8A LTR ERV1 0 727 473 261 0 0 0 chr4 31460478 31460507 -170867840 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 387 98 0 0 chr4 31460997 31461058 -170867289 + (CA)n Simple_repeat Simple_repeat 1 61 0 407 340 90 9 chr4 31461714 31461926 -170866421 + MIR SINE MIR 23 251 -11 394 346 49 45 chr4 31462068 31462334 -170866013 - L2 LINE L2 0 3313 3047 618 307 94 12 chr4 31462348 31462602 -170865745 - L2 LINE L2 -576 2738 2464 21 57 0 0 chr4 31463355 31463390 -170864957 + AT_rich Low_complexity Low_complexity 1 35 0 216 196 143 0 chr4 31464340 31464396 -170863951 - MIR SINE MIR -105 157 94 1333 120 34 0 chr4 31464510 31464718 -170863629 - L1PA10 LINE L1 -3 6165 5951 1364 194 35 1 chr4 31465614 31465938 -170862409 + MLT2C2 LTR ERVL 1 349 -48 25 31 0 0 chr4 31466130 31466162 -170862185 + AT_rich Low_complexity Low_complexity 1 32 0 274 355 39 55 chr4 31466201 31466457 -170861890 + MIR SINE MIR 11 262 0 9095 205 33 38 chr4 31466595 31467095 -170861252 + L1MB1 LINE L1 3041 3542 -2647 1459 192 35 21 chr4 31467095 31467381 -170860966 - AluJo SINE Alu -22 290 1 9095 205 33 38 chr4 31467381 31467614 -170860733 + L1MB1 LINE L1 3542 3775 -2414 1750 184 47 11 chr4 31467614 31467973 -170860374 + THE1C LTR MaLR 1 372 -3 9095 205 33 38 chr4 31467973 31470375 -170857972 + L1MB1 LINE L1 3775 6163 -26 235 227 15 15 chr4 31470382 31470448 -170857899 + (CAT)n Simple_repeat Simple_repeat 2 67 0 432 250 15 0 chr4 31470454 31470586 -170857761 + L1MA10 LINE L1 6180 6313 -21 1576 254 22 51 chr4 31470591 31471178 -170857169 + L1ME1 LINE L1 5592 6161 -5 21 36 0 0 chr4 31471546 31471574 -170856773 + AT_rich Low_complexity Low_complexity 1 28 0 228 214 0 0 chr4 31473497 31473539 -170854808 + CT-rich Low_complexity Low_complexity 2 43 0 25 31 0 0 chr4 31473594 31473626 -170854721 + AT_rich Low_complexity Low_complexity 1 32 0 323 304 108 6 chr4 31474023 31474181 -170854166 + MIR SINE MIR 78 251 -11 1877 178 2 63 chr4 31474256 31474671 -170853676 + MLT1B LTR MaLR 1 390 0 572 133 8 0 chr4 31474958 31475078 -170853269 + (TA)n Simple_repeat Simple_repeat 2 122 0 240 403 13 27 chr4 31475694 31475843 -170852504 + L2 LINE L2 35 181 -3133 572 294 36 44 chr4 31475880 31476128 -170852219 + L2 LINE L2 3068 3313 0 1608 181 7 10 chr4 31476503 31476802 -170851545 + AluJo SINE Alu 1 298 -14 1793 83 0 42 chr4 31477139 31477404 -170850943 - L1PA15 LINE L1 -8 6157 5904 22 0 0 0 chr4 31477549 31477571 -170850776 + AT_rich Low_complexity Low_complexity 1 22 0 614 306 65 46 chr4 31477697 31478069 -170850278 - L2 LINE L2 -18 3295 2917 733 277 9 48 chr4 31479947 31480178 -170848169 - MER58A DNA MER1_type 0 224 3 321 342 102 30 chr4 31480208 31480600 -170847747 - L2 LINE L2 -159 3154 2749 340 328 9 0 chr4 31480655 31480771 -170847576 + MIR SINE MIR 146 262 0 27 29 0 0 chr4 31480813 31480847 -170847500 + AT_rich Low_complexity Low_complexity 1 34 0 22 70 0 0 chr4 31481107 31481150 -170847197 + AT_rich Low_complexity Low_complexity 1 43 0 2096 136 3 0 chr4 31481191 31481493 -170846854 - AluSx SINE Alu -9 303 1 27 0 0 0 chr4 31481504 31481531 -170846816 + AT_rich Low_complexity Low_complexity 1 27 0 368 227 13 0 chr4 31482122 31482197 -170846150 + LTR16C LTR ERVL 412 487 -4 2243 57 0 4 chr4 31482238 31482551 -170845796 - AluSc SINE Alu 0 312 1 201 39 0 0 chr4 31483499 31483525 -170844822 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 222 327 53 44 chr4 31484390 31484503 -170843844 - L3 LINE CR1 -35 1542 1429 23 0 0 0 chr4 31485527 31485550 -170842797 + AT_rich Low_complexity Low_complexity 1 23 0 265 340 58 0 chr4 31485811 31485914 -170842433 - L2 LINE L2 -1 3271 3163 21 0 0 0 chr4 31488555 31488576 -170839771 + AT_rich Low_complexity Low_complexity 1 21 0 194 313 94 42 chr4 31489632 31489728 -170838619 - MER5A DNA MER1_type -1 188 88 * 211 341 8 45 chr4 31489655 31489787 -170838560 + MER5A DNA MER1_type 35 161 -28 477 349 107 5 chr4 31490001 31490216 -170838131 + MIR SINE MIR 8 244 -18 643 302 79 34 chr4 31490325 31490616 -170837731 + L2 LINE L2 2967 3270 -43 267 333 31 0 chr4 31490780 31490876 -170837471 - MER5A DNA MER1_type -77 112 14 10298 159 40 13 chr4 31490876 31492550 -170835797 - Tigger1 DNA MER2_type -515 1903 173 198 0 0 0 chr4 31492550 31492572 -170835775 + (TAA)n Simple_repeat Simple_repeat 3 24 0 10298 159 40 13 chr4 31492572 31492750 -170835597 - Tigger1 DNA MER2_type -2245 173 1 1999 130 53 28 chr4 31493304 31493659 -170834688 + THE1B LTR MaLR 1 364 0 24 0 0 0 chr4 31496263 31496287 -170832060 + AT_rich Low_complexity Low_complexity 1 24 0 28 61 0 0 chr4 31496484 31496533 -170831814 + AT_rich Low_complexity Low_complexity 1 49 0 961 242 74 17 chr4 31496576 31496589 -170831758 - L1MA6 LINE L1 -7 6293 6282 816 118 0 15 chr4 31496589 31496725 -170831622 - L1PB1 LINE L1 0 6151 6018 961 242 74 17 chr4 31496725 31497008 -170831339 - L1MA6 LINE L1 -18 6282 5980 213 108 0 0 chr4 31497059 31497096 -170831251 + (TA)n Simple_repeat Simple_repeat 2 38 0 297 0 0 0 chr4 31497507 31497540 -170830807 + (TC)n Simple_repeat Simple_repeat 2 34 0 225 0 0 0 chr4 31497539 31497564 -170830783 + (TA)n Simple_repeat Simple_repeat 1 25 0 * 2749 117 22 0 chr4 31497564 31497974 -170830373 - L1MA6 LINE L1 -363 5937 5519 2145 247 24 28 chr4 31497971 31498643 -170829704 - L1M2c LINE L1 -4640 2149 1481 * 874 347 69 27 chr4 31499144 31499697 -170828650 - L1M2c LINE L1 -6207 582 7 189 269 77 0 chr4 31500760 31500812 -170827535 + L2 LINE L2 3190 3245 -68 227 200 56 56 chr4 31500883 31500973 -170827374 + MLT1J1 LTR MaLR 71 160 -286 838 272 145 53 chr4 31501274 31501873 -170826474 - MLT1E1 LTR MaLR 0 654 1 405 204 10 13 chr4 31502919 31503038 -170825309 + L1MD3 LINE L1 6849 7015 -847 1610 238 87 2 chr4 31503040 31503489 -170824858 + L1MD3 LINE L1 7349 7835 -160 2077 121 7 0 chr4 31503506 31503795 -170824552 - AluSx SINE Alu -19 293 3 1961 139 152 11 chr4 31503808 31504183 -170824164 - MSTA LTR MaLR 0 428 1 326 226 78 9 chr4 31504338 31504453 -170823894 + L1MD3 LINE L1 7863 7985 -10 531 270 131 36 chr4 31504738 31504960 -170823387 + MIR SINE MIR 8 250 -12 242 294 199 35 chr4 31505037 31505238 -170823109 - MIR SINE MIR -6 256 23 23 33 0 0 chr4 31505351 31505381 -170822966 + AT_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chr4 31506422 31506452 -170821895 + AT_rich Low_complexity Low_complexity 1 30 0 1981 141 0 3 chr4 31506782 31507113 -170821234 + AluSx SINE Alu 1 312 0 325 167 97 14 chr4 31507233 31507305 -170821042 + LTR8 LTR ERV1 1 78 -613 188 290 110 50 chr4 31507685 31507785 -170820562 - L2 LINE L2 -276 3037 2932 21 82 0 0 chr4 31508046 31508095 -170820252 + AT_rich Low_complexity Low_complexity 1 49 0 321 205 391 0 chr4 31508264 31508484 -170819863 + L1MD3 LINE L1 6959 7097 -688 454 281 9 0 chr4 31508484 31508598 -170819749 + MLT1F1 LTR MaLR 17 131 -436 1989 240 32 14 chr4 31508600 31509159 -170819188 + L1MD3 LINE L1 7410 7978 -17 360 341 50 17 chr4 31509412 31509591 -170818756 + MLT1E LTR MaLR 1 185 -408 295 167 14 14 chr4 31509604 31509676 -170818671 + CT-rich Low_complexity Low_complexity 6 77 0 24 53 0 0 chr4 31510290 31510328 -170818019 + AT_rich Low_complexity Low_complexity 1 38 0 555 189 69 62 chr4 31511733 31511930 -170816417 + MIR SINE MIR 1 200 -62 21 57 0 0 chr4 31511987 31512022 -170816325 + AT_rich Low_complexity Low_complexity 1 35 0 306 267 78 35 chr4 31512119 31512235 -170816112 - L1ME4a LINE L1 -233 5888 5768 248 305 141 8 chr4 31512255 31512383 -170815964 + MIR SINE MIR 118 262 0 21 0 0 0 chr4 31512926 31512947 -170815400 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 31513262 31513283 -170815064 + AT_rich Low_complexity Low_complexity 1 21 0 245 311 74 27 chr4 31513935 31513963 -170814384 - MLT1K LTR MaLR -164 424 399 2247 101 0 0 chr4 31513963 31514260 -170814087 - AluSg1 SINE Alu -12 297 1 245 311 74 27 chr4 31514260 31514379 -170813968 - MLT1K LTR MaLR -189 399 270 823 125 7 28 chr4 31514505 31514649 -170813698 + MLT1A1 LTR MaLR 11 151 -214 969 256 133 67 chr4 31514703 31515750 -170812597 + L1M4 LINE L1 4492 5607 -577 1585 128 15 4 chr4 31515750 31516016 -170812331 + L1PA13 LINE L1 5888 6156 -7 622 284 48 14 chr4 31516092 31516443 -170811904 + L1ME3A LINE L1 5469 5881 -289 218 169 17 34 chr4 31516594 31516653 -170811694 + CT-rich Low_complexity Low_complexity 2 59 0 415 194 58 22 chr4 31516769 31516908 -170811439 - L1MC2 LINE L1 -1 6343 6200 1407 181 10 51 chr4 31516911 31517204 -170811143 + MSTB LTR MaLR 3 283 -143 644 179 0 8 chr4 31517204 31517321 -170811026 + AluJ SINE Alu 1 116 -186 496 195 0 0 chr4 31517321 31517408 -170810939 + AluJ SINE Alu 168 254 -58 5091 46 3 3 chr4 31517542 31518175 -170810172 + L1PA5 LINE L1 5517 6149 -5 224 317 40 29 chr4 31519186 31519317 -170809030 - MIR SINE MIR -65 143 28 376 341 7 7 chr4 31519340 31519478 -170808869 - MIR SINE MIR -10 252 115 21 36 0 0 chr4 31519753 31519781 -170808566 + AT_rich Low_complexity Low_complexity 1 28 0 251 326 0 21 chr4 31519876 31519971 -170808376 + MER5A DNA MER1_type 11 103 -86 22 35 0 0 chr4 31520092 31520121 -170808226 + AT_rich Low_complexity Low_complexity 1 29 0 2374 67 0 10 chr4 31520476 31520788 -170807559 - AluY SINE Alu -2 309 1 22 0 0 0 chr4 31523043 31523065 -170805282 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr4 31523751 31523776 -170804571 + AT_rich Low_complexity Low_complexity 1 25 0 213 319 0 53 chr4 31524279 31524373 -170803974 + MIR SINE MIR 162 250 -12 67 42 0 0 chr4 31524819 31524914 -170803433 + AT_rich Low_complexity Low_complexity 1 95 0 265 331 53 30 chr4 31525412 31525545 -170802802 + MIR SINE MIR 1 136 -126 31 26 0 0 chr4 31525877 31525915 -170802432 + AT_rich Low_complexity Low_complexity 1 38 0 22 70 0 0 chr4 31526210 31526253 -170802094 + AT_rich Low_complexity Low_complexity 1 43 0 264 212 30 0 chr4 31526382 31526454 -170801893 + CT-rich Low_complexity Low_complexity 1 74 0 * 383 340 28 28 chr4 31526447 31526659 -170801688 - HAL1b LINE L1 -861 487 276 22 0 0 0 chr4 31527153 31527175 -170801172 + AT_rich Low_complexity Low_complexity 1 22 0 256 254 45 0 chr4 31527483 31527550 -170800797 - HAL1 LINE L1 -829 1678 1609 329 275 94 7 chr4 31527552 31527701 -170800646 - MLT1I LTR MaLR 0 590 429 2074 144 0 0 chr4 31528858 31529170 -170799177 + AluSx SINE Alu 1 312 0 30302 117 13 62 chr4 31529709 31536176 -170792171 + L1PA7 LINE L1 12 6143 -11 198 0 0 0 chr4 31536179 31536201 -170792146 + (TTAAA)n Simple_repeat Simple_repeat 4 25 0 988 312 73 38 chr4 31536268 31536819 -170791528 + L2 LINE L2 2381 2950 -364 1375 201 17 24 chr4 31538464 31538758 -170789589 + AluJb SINE Alu 3 294 -18 222 150 0 0 chr4 31539110 31539150 -170789197 + (ATG)n Simple_repeat Simple_repeat 2 41 0 446 273 0 0 chr4 31539155 31539254 -170789093 - MLT1E LTR MaLR -434 159 61 697 217 0 0 chr4 31539934 31540072 -170788275 - AluJb SINE Alu -19 293 156 1382 254 83 48 chr4 31540831 31541563 -170786784 + Zaphod DNA AcHobo 217 974 -3057 985 252 122 3 chr4 31541593 31541962 -170786385 + Zaphod DNA AcHobo 3611 4023 -8 465 278 133 44 chr4 31543525 31543705 -170784642 - MIR SINE MIR -27 235 40 208 237 0 0 chr4 31543716 31543754 -170784593 + polypurine Low_complexity Low_complexity 5 42 0 225 372 74 25 chr4 31544079 31544200 -170784147 + L2 LINE L2 3134 3260 -12 22 0 0 0 chr4 31544211 31544233 -170784114 + AT_rich Low_complexity Low_complexity 1 22 0 322 315 0 37 chr4 31544320 31544428 -170783919 - L2 LINE L2 0 3272 3169 781 293 34 16 chr4 31545403 31545724 -170782623 + L1ME4a LINE L1 5583 5909 -212 391 305 50 47 chr4 31545835 31546213 -170782134 - MLT1I LTR MaLR -12 397 22 1044 279 33 89 chr4 31546572 31547146 -170781201 - MER34 LTR ERV1 0 542 1 709 227 0 0 chr4 31547263 31547395 -170780952 + FLAM_C SINE Alu 2 133 0 426 115 39 0 chr4 31547403 31547481 -170780866 + AluS SINE Alu 232 312 0 781 191 0 0 chr4 31547702 31547833 -170780514 + FLAM_A SINE Alu 6 136 -6 209 54 0 89 chr4 31547858 31547914 -170780433 + (TAA)n Simple_repeat Simple_repeat 1 51 0 435 307 199 21 chr4 31548141 31548405 -170779942 + L2 LINE L2 2688 3000 -313 225 122 24 0 chr4 31548672 31548713 -170779634 - L1PBa LINE L1 -4410 2453 2412 425 303 16 0 chr4 31548982 31549104 -170779243 + MER58A DNA MER1_type 1 124 0 386 264 22 0 chr4 31549143 31549234 -170779113 + MER58A DNA MER1_type 127 219 -5 189 0 0 0 chr4 31549282 31549303 -170779044 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 207 191 48 0 chr4 31549451 31549493 -170778854 + L2 LINE L2 3219 3262 -10 742 237 51 0 chr4 31550553 31550730 -170777617 - MER5A DNA MER1_type -3 186 1 809 264 57 4 chr4 31551430 31551657 -170776690 + MER8 DNA MER2_type 1 239 0 1891 141 17 0 chr4 31552130 31552428 -170775919 + AluSx SINE Alu 4 306 -6 205 83 0 28 chr4 31552685 31552721 -170775626 + (CAAAA)n Simple_repeat Simple_repeat 4 38 0 24 53 0 0 chr4 31552765 31552803 -170775544 + AT_rich Low_complexity Low_complexity 1 38 0 21 36 0 0 chr4 31553343 31553371 -170774976 + AT_rich Low_complexity Low_complexity 1 28 0 587 241 5 98 chr4 31553450 31553526 -170774821 + MER20 DNA MER1_type 24 106 -113 2446 84 6 0 chr4 31553526 31553837 -170774510 + AluSp SINE Alu 1 313 0 587 241 5 98 chr4 31553837 31553963 -170774384 + MER20 DNA MER1_type 106 207 -12 342 111 12 25 chr4 31555010 31555091 -170773256 + (TA)n Simple_repeat Simple_repeat 1 80 0 226 178 0 0 chr4 31555115 31555160 -170773187 - LTR66 LTR ERVL -172 438 394 189 154 0 0 chr4 31555160 31555199 -170773148 + (CATA)n Simple_repeat Simple_repeat 2 40 0 198 0 0 0 chr4 31555274 31555296 -170773051 + (TG)n Simple_repeat Simple_repeat 1 22 0 279 189 22 22 chr4 31555315 31555405 -170772942 + (TATAA)n Simple_repeat Simple_repeat 2 91 0 205 135 56 0 chr4 31555405 31555494 -170772853 + (TA)n Simple_repeat Simple_repeat 1 94 0 27 0 0 0 chr4 31555572 31555599 -170772748 + AT_rich Low_complexity Low_complexity 1 27 0 1815 138 11 0 chr4 31555621 31555889 -170772458 + AluSx SINE Alu 27 297 -15 2033 140 39 39 chr4 31555898 31556262 -170772085 + THE1B LTR MaLR 1 364 0 9098 120 81 36 chr4 31556262 31557774 -170770573 + THE1B-int LTR MaLR 1 1580 0 1956 126 72 31 chr4 31557774 31558123 -170770224 + THE1B LTR MaLR 1 363 -1 1415 208 15 0 chr4 31558124 31558398 -170769949 - AluJb SINE Alu -34 278 1 1219 144 0 16 chr4 31558610 31558826 -170769521 - AluSg/x SINE Alu 0 313 101 1527 231 35 3 chr4 31559338 31559706 -170768641 + MLT2C2 LTR ERVL 5 384 -80 228 174 0 0 chr4 31559754 31559800 -170768547 - LTR66 LTR ERVL -171 439 394 213 39 0 0 chr4 31559824 31559850 -170768497 + (GA)n Simple_repeat Simple_repeat 1 26 0 265 103 0 0 chr4 31559857 31559896 -170768451 + MLT2C2 LTR ERVL 359 397 0 1280 311 54 69 chr4 31562033 31563020 -170765327 - L2 LINE L2 0 3313 2328 23 33 0 0 chr4 31563036 31563066 -170765281 + AT_rich Low_complexity Low_complexity 1 30 0 1634 115 22 103 chr4 31563069 31563412 -170764935 + AluYb8 SINE Alu 1 318 0 592 359 48 19 chr4 31563616 31563987 -170764360 + LTR16A LTR ERVL 52 433 -17 225 279 33 0 chr4 31564950 31565011 -170763336 + MLT1D LTR MaLR 5 67 -438 296 220 0 22 chr4 31565013 31565104 -170763243 - L1MC4 LINE L1 -1339 6703 6615 231 283 0 22 chr4 31565025 31565117 -170763230 + L1MC4 LINE L1 6614 6703 -1339 * 309 153 0 0 chr4 31565120 31565218 -170763129 + (TA)n Simple_repeat Simple_repeat 1 98 0 1184 289 51 12 chr4 31565227 31565636 -170762711 + MLT1D LTR MaLR 81 505 0 25 31 0 0 chr4 31565722 31565754 -170762593 + AT_rich Low_complexity Low_complexity 1 32 0 5158 159 34 4 chr4 31565757 31566966 -170761381 - L1PA16 LINE L1 -9 6157 4912 327 255 7 28 chr4 31566961 31567106 -170761241 + L1P LINE L1 3022 3163 -2983 * 262 203 0 40 chr4 31567170 31567244 -170761103 + MER57A-int LTR ERV1 857 927 -4196 317 172 0 0 chr4 31567279 31567337 -170761010 + MER34C LTR ERV1 155 212 -373 431 209 46 38 chr4 31567501 31567661 -170760686 + MER57A-int LTR ERV1 1096 1199 -3672 286 220 0 77 chr4 31567647 31567738 -170760609 + MER57A-int LTR ERV1 2721 2804 -3142 * 442 217 22 0 chr4 31567818 31567910 -170760437 + MER57A-int LTR ERV1 3247 3340 -2991 287 193 0 45 chr4 31568159 31568247 -170760100 + MER57A-int LTR ERV1 1838 1921 -3202 189 211 0 0 chr4 31568435 31568487 -170759860 + A-rich Low_complexity Low_complexity 1 52 0 5230 197 50 56 chr4 31568694 31571339 -170757008 + MER57A-int LTR ERV1 4325 7145 -392 562 169 31 39 chr4 31571339 31571469 -170756878 + LTR54B LTR ERV1 3 131 -367 496 95 0 14 chr4 31571511 31571585 -170756762 + MER57A-int LTR ERV1 7222 7294 -243 1892 154 16 3 chr4 31571611 31571923 -170756424 + MER57A-int LTR ERV1 7222 7537 0 2389 146 15 2 chr4 31571923 31572321 -170756026 + MER57A LTR ERV1 1 403 0 598 299 86 0 chr4 31572324 31572545 -170755802 - HsTC2 DNA Tc2 -394 1504 1265 268 296 41 0 chr4 31572581 31572679 -170755668 - HsTC2 DNA Tc2 -1796 102 1 27 0 0 0 chr4 31572679 31572706 -170755641 + AT_rich Low_complexity Low_complexity 1 27 0 30 0 0 0 chr4 31573844 31573874 -170754473 + AT_rich Low_complexity Low_complexity 1 30 0 1019 165 28 0 chr4 31573876 31574058 -170754289 - L1PA16 LINE L1 -11 6155 5969 1423 233 61 42 chr4 31574314 31574848 -170753499 + MER67C LTR ERV1 4 511 -3 229 148 49 16 chr4 31576047 31576108 -170752239 + (TA)n Simple_repeat Simple_repeat 1 63 0 219 69 0 0 chr4 31577491 31577520 -170750827 + (TAA)n Simple_repeat Simple_repeat 1 29 0 2162 156 5 32 chr4 31577673 31578046 -170750301 - THE1B LTR MaLR -1 363 1 282 320 206 36 chr4 31578959 31579265 -170749082 - L2 LINE L2 -10 3303 2946 595 225 67 17 chr4 31579270 31579448 -170748899 - L1M4 LINE L1 -1959 4391 4205 331 111 16 16 chr4 31579467 31579530 -170748817 + (TTCC)n Simple_repeat Simple_repeat 1 63 0 971 97 29 11 chr4 31579542 31579717 -170748630 + CT-rich Low_complexity Low_complexity 2 179 0 533 319 65 9 chr4 31579731 31579960 -170748387 - L1M4 LINE L1 -4935 1346 1105 1382 179 32 47 chr4 31580041 31580381 -170747966 + L1MA8 LINE L1 5955 6289 -2 324 267 34 27 chr4 31582130 31582276 -170746071 - L1MEc LINE L1 -4286 2110 1964 * 852 103 0 0 chr4 31582275 31582401 -170745946 - L1PA7 LINE L1 -1318 4828 4703 6722 63 7 6 chr4 31582402 31583722 -170744625 + L1PA7 LINE L1 4833 6154 0 2730 287 60 59 chr4 31583747 31584946 -170743401 - L1MEc LINE L1 -4421 1975 773 303 28 0 0 chr4 31584946 31584982 -170743365 + (TG)n Simple_repeat Simple_repeat 1 36 0 2730 287 60 59 chr4 31584982 31585605 -170742742 - L1MEc LINE L1 -5623 773 152 * 5845 134 26 43 chr4 31585595 31586756 -170741591 + L1MA3 LINE L1 5163 6305 0 1775 235 36 35 chr4 31588045 31588538 -170739809 + MLT1D LTR MaLR 1 494 -11 26 74 0 0 chr4 31589871 31589925 -170738422 + AT_rich Low_complexity Low_complexity 1 54 0 244 291 109 117 chr4 31590633 31591028 -170737319 - L2 LINE L2 0 3313 2922 184 305 25 59 chr4 31591297 31591415 -170736932 + MIR SINE MIR 34 147 -115 328 304 73 16 chr4 31592433 31592624 -170735723 + MLT1J2 LTR MaLR 26 227 -223 3713 52 8 0 chr4 31592750 31593226 -170735121 + L1PA7 LINE L1 5675 6154 0 1776 163 97 83 chr4 31593607 31594103 -170734244 - MLT1D LTR MaLR 0 505 3 207 0 0 0 chr4 31594699 31594722 -170733625 + (T)n Simple_repeat Simple_repeat 1 23 0 189 0 0 0 chr4 31595349 31595370 -170732977 + (CAAA)n Simple_repeat Simple_repeat 3 23 0 1744 176 3 0 chr4 31596138 31596428 -170731919 + AluJb SINE Alu 9 299 -13 272 230 24 32 chr4 31597095 31597221 -170731126 + (TA)n Simple_repeat Simple_repeat 1 125 0 558 327 82 18 chr4 31597470 31598042 -170730305 - L1ME3A LINE L1 -235 5935 5327 255 208 132 47 chr4 31598302 31598408 -170729939 - L1 LINE L1 -1149 4997 4883 451 345 82 16 chr4 31598515 31598941 -170729406 - L1 LINE L1 -1354 4792 4339 226 284 68 0 chr4 31598955 31599043 -170729304 - L1 LINE L1 -1922 4224 4131 2167 119 0 0 chr4 31599172 31599474 -170728873 - AluSx SINE Alu -8 304 3 21 82 0 0 chr4 31599902 31599951 -170728396 + AT_rich Low_complexity Low_complexity 1 49 0 657 181 0 45 chr4 31600157 31600290 -170728057 + AluJb SINE Alu 1 127 -185 29 28 0 0 chr4 31600446 31600482 -170727865 + AT_rich Low_complexity Low_complexity 1 36 0 384 331 41 35 chr4 31600680 31600849 -170727498 + MER5A DNA MER1_type 20 189 0 270 338 11 43 chr4 31600849 31601019 -170727328 - MER5B DNA MER1_type -6 172 18 445 110 55 0 chr4 31601345 31601418 -170726929 + AluSq/x SINE Alu 61 137 -175 1413 164 0 0 chr4 31601418 31601638 -170726709 + AluSg/x SINE Alu 90 309 -3 808 327 93 16 chr4 31601662 31602038 -170726309 - L2 LINE L2 -2646 668 264 352 366 46 16 chr4 31602643 31602837 -170725510 + L2 LINE L2 2430 2629 -685 222 118 0 0 chr4 31603206 31603240 -170725107 + (T)n Simple_repeat Simple_repeat 1 34 0 1151 231 80 41 chr4 31604585 31605065 -170723282 - MER67C LTR ERV1 -37 477 15 6007 150 47 19 chr4 31605127 31606324 -170722023 + Tigger3b DNA MER2_type 1 1230 -1 216 0 0 0 chr4 31606601 31606625 -170721722 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 591 213 41 77 chr4 31607808 31607977 -170720370 + MER20 DNA MER1_type 56 218 -1 264 138 0 55 chr4 31609164 31609273 -170719074 + (GA)n Simple_repeat Simple_repeat 2 104 0 283 301 62 26 chr4 31611132 31611245 -170717102 - MLT1E LTR MaLR -455 138 22 367 351 65 103 chr4 31612091 31612129 -170716218 - HAL1 LINE L1 -1832 675 637 402 21 0 0 chr4 31612129 31612176 -170716171 + (TG)n Simple_repeat Simple_repeat 2 48 0 367 351 65 103 chr4 31612176 31612470 -170715877 - HAL1 LINE L1 -1870 637 333 2181 151 27 24 chr4 31612470 31612882 -170715465 - L1MA6 LINE L1 0 6300 5888 367 351 65 103 chr4 31612882 31612966 -170715381 - HAL1 LINE L1 -2174 333 247 342 0 0 0 chr4 31612966 31613004 -170715343 + (TG)n Simple_repeat Simple_repeat 2 39 0 367 351 65 103 chr4 31613004 31613281 -170715066 - HAL1 LINE L1 -2260 247 7 24 0 0 0 chr4 31613930 31613954 -170714393 + AT_rich Low_complexity Low_complexity 1 24 0 3514 215 42 33 chr4 31614560 31614977 -170713370 - L1MB8 LINE L1 -108 6881 6469 892 112 0 0 chr4 31614977 31615111 -170713236 - L1PA14 LINE L1 -3 6158 6025 3514 215 42 33 chr4 31615111 31616559 -170711788 - L1MB8 LINE L1 -520 6469 4998 36 82 0 0 chr4 31616595 31616680 -170711667 + AT_rich Low_complexity Low_complexity 1 85 0 1290 279 32 16 chr4 31616680 31617175 -170711172 - L1MB8 LINE L1 -1980 4977 4475 6922 62 0 8 chr4 31617295 31618940 -170709407 - L1PA6 LINE L1 0 6154 4513 1388 242 78 67 chr4 31618944 31619918 -170708429 - L1MB8 LINE L1 -2446 4511 3527 25 0 0 0 chr4 31619918 31619943 -170708404 + AT_rich Low_complexity Low_complexity 1 25 0 1808 293 49 31 chr4 31619993 31621068 -170707279 - L1MB8 LINE L1 -4536 2423 1329 1691 335 61 26 chr4 31621725 31622563 -170705784 - L1MB8 LINE L1 -5951 908 42 27 29 0 0 chr4 31622648 31622682 -170705665 + AT_rich Low_complexity Low_complexity 1 34 0 1116 277 52 38 chr4 31622722 31623220 -170705127 + MLT1D LTR MaLR 1 505 0 26 30 0 0 chr4 31623343 31623376 -170704971 + AT_rich Low_complexity Low_complexity 1 33 0 311 253 46 11 chr4 31623381 31623468 -170704879 + L1MC4 LINE L1 6621 6710 -1332 217 341 55 0 chr4 31625531 31625622 -170702725 - L2 LINE L2 -775 2539 2444 193 347 14 0 chr4 31628483 31628555 -170699792 - MIR SINE MIR -127 135 63 743 200 0 0 chr4 31629695 31629825 -170698522 + FLAM_C SINE Alu 2 131 -2 6453 75 12 8 chr4 31631745 31633095 -170695252 + L1PA7 LINE L1 4795 6148 -6 285 246 0 0 chr4 31633098 31633163 -170695184 + L1MCa LINE L1 1612 1676 -4750 252 0 0 0 chr4 31633165 31633193 -170695154 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 664 332 20 10 chr4 31634319 31634611 -170693736 + MLT1J1 LTR MaLR 8 302 -144 24 32 0 0 chr4 31634960 31634991 -170693356 + AT_rich Low_complexity Low_complexity 1 31 0 666 221 12 18 chr4 31635861 31636024 -170692323 + MER3 DNA MER1_type 23 184 -25 1715 182 3 13 chr4 31636514 31636821 -170691526 + AluJb SINE Alu 1 304 -8 414 315 32 37 chr4 31639577 31639793 -170688554 - L2 LINE L2 -1 3312 3098 5655 160 24 34 chr4 31640100 31640285 -170688062 - L1MA3 LINE L1 0 6305 6120 1569 185 33 0 chr4 31640285 31640561 -170687786 + AluJb SINE Alu 1 285 -27 5655 160 24 34 chr4 31640561 31640773 -170687574 - L1MA3 LINE L1 -185 6120 5907 1681 159 0 57 chr4 31640773 31641093 -170687254 + AluSx SINE Alu 5 307 0 5655 160 24 34 chr4 31641093 31642022 -170686325 - L1MA3 LINE L1 -398 5907 4994 208 271 0 0 chr4 31642509 31642557 -170685790 + L2 LINE L2 2602 2649 -665 23 33 0 0 chr4 31642627 31642657 -170685690 + AT_rich Low_complexity Low_complexity 1 30 0 1396 207 26 0 chr4 31642664 31642934 -170685413 - AluJo SINE Alu -22 290 14 1951 111 0 52 chr4 31643263 31643588 -170684759 + AluSc SINE Alu 1 308 -1 2796 10 0 0 chr4 31644036 31644343 -170684004 + AluY SINE Alu 1 307 -4 35 63 0 0 chr4 31644643 31644706 -170683641 + AT_rich Low_complexity Low_complexity 1 63 0 1311 239 32 67 chr4 31645232 31645755 -170682592 + MLT1D LTR MaLR 1 505 0 34 24 0 0 chr4 31645980 31646021 -170682326 + AT_rich Low_complexity Low_complexity 1 41 0 510 305 112 9 chr4 31646327 31646550 -170681797 + MIR SINE MIR 7 252 -10 254 71 0 24 chr4 31647000 31647042 -170681305 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 1287 220 0 52 chr4 31647048 31647339 -170681008 - AluJo SINE Alu -36 276 1 5624 110 38 6 chr4 31647378 31648479 -170679868 + L1PA10 LINE L1 5017 6157 -11 211 324 88 0 chr4 31649040 31649142 -170679205 - L2 LINE L2 0 3313 3203 21 36 0 0 chr4 31649577 31649605 -170678742 + AT_rich Low_complexity Low_complexity 1 28 0 2199 107 0 3 chr4 31649772 31650081 -170678266 + AluY SINE Alu 1 308 -3 336 24 0 0 chr4 31651260 31651301 -170677046 + (CA)n Simple_repeat Simple_repeat 2 42 0 5180 158 14 10 chr4 31651843 31652752 -170675595 - L1PA16 LINE L1 0 6166 5254 283 128 0 0 chr4 31652787 31652834 -170675513 - L1PA16 LINE L1 -860 5286 5240 3938 226 19 25 chr4 31652835 31653378 -170674969 + L1P LINE L1 4235 4769 -1377 192 40 0 0 chr4 31653378 31653403 -170674944 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 3938 226 19 25 chr4 31653403 31653887 -170674460 + L1P LINE L1 4769 5255 -891 1908 140 29 45 chr4 31654896 31655275 -170673072 + THE1C LTR MaLR 1 373 -2 956 202 17 45 chr4 31655464 31655751 -170672596 - L1MB2 LINE L1 -2 7129 6851 1412 109 0 92 chr4 31655757 31655986 -170672361 - AluSc SINE Alu -81 228 21 2135 189 48 50 chr4 31655997 31656515 -170671832 - L1MB2 LINE L1 -343 6788 6271 509 113 0 12 chr4 31656515 31656595 -170671752 + MADE1 DNA Mariner 1 79 -1 2135 189 48 50 chr4 31656595 31657131 -170671216 - L1MB2 LINE L1 -860 6271 5719 4548 236 62 24 chr4 31657132 31658734 -170669613 - L1MB2 LINE L1 -2200 4906 3244 287 282 45 13 chr4 31658739 31658895 -170669452 - L1MB2 LINE L1 -3965 3143 2983 2200 282 54 31 chr4 31658982 31659329 -170669018 - L1MB2 LINE L1 -4512 2596 2258 216 0 0 0 chr4 31659329 31659353 -170668994 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 2200 282 54 31 chr4 31659353 31660049 -170668298 - L1MB2 LINE L1 -4850 2258 1529 230 332 67 45 chr4 31660197 31660420 -170667927 - L1MB2 LINE L1 -6802 228 1 21 36 0 0 chr4 31660669 31660697 -170667650 + AT_rich Low_complexity Low_complexity 1 28 0 965 284 78 35 chr4 31661483 31662089 -170666258 + MLT1E3 LTR MaLR 1 621 -3 315 0 0 0 chr4 31662100 31662135 -170666212 + (TA)n Simple_repeat Simple_repeat 1 35 0 474 234 70 104 chr4 31662412 31662711 -170665636 + L1ME3A LINE L1 5853 6141 -29 889 277 113 41 chr4 31662722 31662850 -170665497 - L1ME3A LINE L1 -335 5835 5718 1860 154 3 3 chr4 31662850 31663142 -170665205 + AluJb SINE Alu 1 292 -20 889 277 113 41 chr4 31663142 31663709 -170664638 - L1ME3A LINE L1 -452 5718 5096 407 311 71 46 chr4 31663781 31663875 -170664472 + MIR SINE MIR 6 96 -166 2011 212 26 9 chr4 31663875 31664089 -170664258 - MSTB1 LTR MaLR 0 432 223 369 0 0 0 chr4 31664089 31664130 -170664217 + (TG)n Simple_repeat Simple_repeat 1 41 0 2011 212 26 9 chr4 31664130 31664340 -170664007 - MSTB1 LTR MaLR -209 223 1 407 311 71 46 chr4 31664340 31664483 -170663864 + MIR SINE MIR 96 249 -13 359 325 25 25 chr4 31664676 31664876 -170663471 - LTR67 LTR ERVL 0 557 358 1335 262 36 25 chr4 31665052 31665414 -170662933 + MLT1E LTR MaLR 226 591 -2 2260 92 7 0 chr4 31666681 31666975 -170661372 + AluY SINE Alu 1 296 -15 26 30 0 0 chr4 31667105 31667138 -170661209 + AT_rich Low_complexity Low_complexity 1 33 0 1514 266 48 48 chr4 31667276 31667773 -170660574 + MLT1F1 LTR MaLR 46 567 0 39 22 0 0 chr4 31668572 31668618 -170659729 + AT_rich Low_complexity Low_complexity 1 46 0 1854 136 0 32 chr4 31669138 31669447 -170658900 + AluSx SINE Alu 3 301 -11 1857 139 0 43 chr4 31669652 31669975 -170658372 + AluY SINE Alu 1 309 -2 303 279 12 67 chr4 31670016 31670181 -170658166 - HAL1 LINE L1 -4 2503 2348 322 198 21 21 chr4 31670366 31670462 -170657885 - HAL1 LINE L1 -297 2210 2115 1724 223 55 81 chr4 31670462 31671127 -170657220 + MLT1E2 LTR MaLR 1 626 0 2418 64 0 13 chr4 31671304 31671618 -170656729 - AluY SINE Alu -1 310 1 293 227 50 25 chr4 31671993 31672112 -170656235 - HAL1 LINE L1 -1421 1086 965 2262 283 93 11 chr4 31672137 31673018 -170655329 - MER69B DNA AcHobo -273 953 1 22 35 0 0 chr4 31673301 31673330 -170655017 + AT_rich Low_complexity Low_complexity 1 29 0 417 374 67 43 chr4 31673861 31674401 -170653946 - HAL1 LINE L1 -1813 694 142 1479 240 34 16 chr4 31674534 31674917 -170653430 + MLT1B LTR MaLR 1 390 0 251 333 103 8 chr4 31675813 31675930 -170652417 + MER91C DNA MER1_type 2 129 -11 1638 203 14 14 chr4 31676238 31676603 -170651744 + MLT1A1 LTR MaLR 1 365 0 23 33 0 0 chr4 31678023 31678053 -170650294 + AT_rich Low_complexity Low_complexity 1 30 0 3692 58 0 2 chr4 31678790 31679259 -170649088 + L1PA8 LINE L1 5694 6161 -11 37 23 0 0 chr4 31679285 31679329 -170649018 + AT_rich Low_complexity Low_complexity 1 44 0 1345 233 98 34 chr4 31679798 31680266 -170648081 + MLT1D LTR MaLR 4 501 -4 596 343 72 52 chr4 31680352 31681386 -170646961 + L2 LINE L2 2148 3201 -71 316 282 51 0 chr4 31681754 31681871 -170646476 + Tigger8 DNA MER2_type 147 269 -397 359 329 81 20 chr4 31681930 31682228 -170646119 + MLT1L LTR MaLR 65 380 -235 484 312 23 18 chr4 31682435 31682653 -170645694 + Tigger8 DNA MER2_type 348 566 -100 27 62 0 0 chr4 31682781 31682829 -170645518 + AT_rich Low_complexity Low_complexity 1 48 0 180 0 0 0 chr4 31683127 31683147 -170645200 + (T)n Simple_repeat Simple_repeat 1 20 0 185 62 0 31 chr4 31683280 31683312 -170645035 + (TTTTTG)n Simple_repeat Simple_repeat 2 32 0 24 53 0 0 chr4 31683835 31683873 -170644474 + AT_rich Low_complexity Low_complexity 1 38 0 2213 93 3 3 chr4 31684257 31684547 -170643800 - AluSx SINE Alu -20 292 3 200 296 71 51 chr4 31684763 31684861 -170643486 + L3b LINE CR1 1358 1457 -126 446 286 58 7 chr4 31685079 31685233 -170643114 + MIR3 SINE MIR 40 201 -7 1255 217 75 3 chr4 31685403 31685721 -170642626 - MLT1C LTR MaLR -124 343 3 180 210 0 65 chr4 31685825 31685887 -170642460 - MIR SINE MIR -30 232 175 1822 156 0 17 chr4 31686088 31686390 -170641957 + AluSx SINE Alu 3 299 -13 339 244 67 0 chr4 31686655 31686745 -170641602 - MIR SINE MIR -100 162 67 1039 241 56 56 chr4 31687137 31687494 -170640853 - MLT1A2 LTR MaLR 0 374 18 285 149 0 0 chr4 31688604 31688671 -170639676 + (TAGA)n Simple_repeat Simple_repeat 2 68 0 269 282 2 0 chr4 31688983 31689059 -170639288 + MER77 LTR ERV1 22 138 -467 2305 179 19 21 chr4 31689083 31689569 -170638778 - MER31A LTR ERV1 0 485 1 676 169 180 11 chr4 31689588 31689766 -170638581 - L1MA9 LINE L1 -1 6311 6104 2359 59 0 0 chr4 31689771 31690057 -170638290 + AluY SINE Alu 17 302 -9 337 267 0 24 chr4 31690104 31690227 -170638120 + MER21B LTR ERV1 247 366 -239 3114 170 83 33 chr4 31690227 31690915 -170637432 + LTR8A LTR ERV1 1 722 -5 363 294 18 76 chr4 31690982 31691236 -170637111 + MER77 LTR ERV1 409 585 -20 348 182 30 15 chr4 31692132 31692198 -170636149 + MER5A DNA MER1_type 46 112 -77 396 179 40 0 chr4 31692199 31692350 -170635997 + (TA)n Simple_repeat Simple_repeat 2 158 0 617 339 119 27 chr4 31692381 31692975 -170635372 - L2 LINE L2 -113 3200 2551 213 330 62 78 chr4 31693033 31693418 -170634929 - L2 LINE L2 -905 2409 2031 1332 178 98 22 chr4 31693419 31693694 -170634653 + AluJo SINE Alu 1 296 -16 285 301 21 21 chr4 31694198 31694291 -170634056 - L2 LINE L2 -3134 180 88 446 290 101 25 chr4 31694458 31694696 -170633651 - MER21B LTR ERV1 -149 714 459 433 237 80 92 chr4 31694689 31694922 -170633425 - MER77 LTR ERV1 -226 379 145 * 450 275 37 123 chr4 31695265 31695509 -170632838 + MER58A DNA MER1_type 1 223 -1 276 282 8 46 chr4 31695567 31695698 -170632649 + MLT1J LTR MaLR 386 511 0 21 0 0 0 chr4 31698163 31698184 -170630163 + AT_rich Low_complexity Low_complexity 1 21 0 2258 92 10 0 chr4 31699531 31699825 -170628522 - AluY SINE Alu -12 299 3 7224 48 6 0 chr4 31700049 31700971 -170627376 + L1PA3 LINE L1 5228 6155 0 1199 234 164 28 chr4 31700971 31701440 -170626907 + MER92B LTR ERV1 100 632 -4 237 252 18 156 chr4 31701464 31701571 -170626776 + MER92C LTR ERV1 2 65 -489 1451 216 146 47 chr4 31701571 31702038 -170626309 - MER67D LTR ERV1 -1 513 1 237 252 18 156 chr4 31702038 31702148 -170626199 + MER92C LTR ERV1 65 189 -365 235 246 46 0 chr4 31702193 31702258 -170626089 + MER92C LTR ERV1 487 554 0 2087 183 2 20 chr4 31703304 31703709 -170624638 + MER57A LTR ERV1 6 403 0 28 86 0 0 chr4 31703958 31704028 -170624319 + AT_rich Low_complexity Low_complexity 1 70 0 21 0 0 0 chr4 31704143 31704164 -170624183 + AT_rich Low_complexity Low_complexity 1 21 0 273 98 0 0 chr4 31704808 31704849 -170623498 + (CA)n Simple_repeat Simple_repeat 2 42 0 747 48 48 0 chr4 31705359 31705484 -170622863 + (GA)n Simple_repeat Simple_repeat 2 132 0 2339 218 19 23 chr4 31706439 31706921 -170621426 - MLT2B1 LTR ERVL -40 480 1 2344 157 13 60 chr4 31708341 31708788 -170619559 - MSTB LTR MaLR 0 426 1 689 148 74 0 chr4 31708788 31708923 -170619424 - MSTB-int LTR MaLR 0 1651 1507 563 285 21 43 chr4 31709303 31709489 -170618858 + MER58A DNA MER1_type 26 207 -17 421 303 74 71 chr4 31709874 31710807 -170617540 - L1MEd LINE L1 -4750 1560 586 793 319 61 63 chr4 31711554 31712081 -170616266 + LTR67 LTR ERVL 32 557 0 240 358 6 48 chr4 31712498 31712663 -170615684 + L2 LINE L2 3156 3313 0 21 57 0 0 chr4 31712726 31712761 -170615586 + AT_rich Low_complexity Low_complexity 1 35 0 1660 283 22 15 chr4 31713184 31713722 -170614625 - MLT1F LTR MaLR 0 542 1 24 32 0 0 chr4 31714119 31714150 -170614197 + AT_rich Low_complexity Low_complexity 1 31 0 26 0 0 0 chr4 31714418 31714444 -170613903 + AT_rich Low_complexity Low_complexity 1 26 0 1617 202 20 15 chr4 31714551 31714893 -170613454 + MER2 DNA MER2_type 1 344 0 35 41 0 0 chr4 31715168 31715217 -170613130 + AT_rich Low_complexity Low_complexity 1 49 0 1233 234 77 92 chr4 31715224 31715907 -170612440 + MER21B LTR ERV1 25 754 -109 180 0 0 0 chr4 31716888 31716908 -170611439 + (TTG)n Simple_repeat Simple_repeat 2 21 0 26 50 0 0 chr4 31717317 31717357 -170610990 + AT_rich Low_complexity Low_complexity 1 40 0 347 324 58 9 chr4 31717414 31717588 -170610759 - MIR SINE MIR -64 144 9 191 32 65 0 chr4 31718168 31718199 -170610148 + (ATATG)n Simple_repeat Simple_repeat 2 34 0 27 49 0 0 chr4 31718275 31718316 -170610031 + AT_rich Low_complexity Low_complexity 1 41 0 2338 79 3 0 chr4 31718325 31718630 -170609717 - AluY SINE Alu -5 306 1 209 326 104 41 chr4 31719258 31719479 -170608868 + L2 LINE L2 2982 3216 -97 606 204 51 7 chr4 31719669 31719806 -170608541 + MER82 DNA MER2_type 1 143 -510 1333 266 67 32 chr4 31720211 31720647 -170607700 + MER82 DNA MER2_type 200 650 -3 2798 10 0 0 chr4 31721558 31721867 -170606480 + AluYb8 SINE Alu 1 309 -9 408 311 13 13 chr4 31722233 31722384 -170605963 - L2 LINE L2 -4 3309 3159 326 283 80 22 chr4 31722774 31722912 -170605435 - LTR16B LTR ERVL -14 450 305 826 78 39 0 chr4 31722998 31723127 -170605220 - L1MA4A LINE L1 -64 6239 6106 27 29 0 0 chr4 31723347 31723381 -170604966 + AT_rich Low_complexity Low_complexity 1 34 0 24 0 0 0 chr4 31723774 31723798 -170604549 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr4 31724018 31724046 -170604301 + AT_rich Low_complexity Low_complexity 1 28 0 26 50 0 0 chr4 31725528 31725568 -170602779 + AT_rich Low_complexity Low_complexity 1 40 0 289 274 9 44 chr4 31725734 31725847 -170602500 + L1MA10 LINE L1 6215 6323 -11 370 224 24 0 chr4 31726382 31726507 -170601840 + CT-rich Low_complexity Low_complexity 3 130 0 243 204 75 43 chr4 31726995 31727088 -170601259 - L1ME LINE L1 -301 5820 5725 309 214 10 92 chr4 31727464 31727562 -170600785 + L1MC4 LINE L1 6614 6703 -1339 252 159 37 19 chr4 31727563 31727584 -170600763 + (TA)n Simple_repeat Simple_repeat 1 20 -89 2070 126 0 0 chr4 31727584 31727869 -170600478 - AluSq SINE Alu -26 287 3 252 159 37 19 chr4 31727869 31727954 -170600393 + (TA)n Simple_repeat Simple_repeat 20 109 0 23 0 0 0 chr4 31727992 31728015 -170600332 + AT_rich Low_complexity Low_complexity 1 23 0 190 148 37 0 chr4 31728032 31728086 -170600261 + (TA)n Simple_repeat Simple_repeat 1 56 0 392 252 81 9 chr4 31728086 31728197 -170600150 - FLAM_A SINE Alu -14 119 1 2260 101 49 38 chr4 31729741 31729933 -170598414 - THE1B LTR MaLR 0 364 165 1908 138 10 30 chr4 31729933 31730238 -170598109 - AluSp SINE Alu -14 299 1 2260 101 49 38 chr4 31730238 31730391 -170597956 - THE1B LTR MaLR -199 165 15 231 188 0 0 chr4 31731052 31731100 -170597247 + (CA)n Simple_repeat Simple_repeat 1 48 0 25 31 0 0 chr4 31731361 31731393 -170596954 + AT_rich Low_complexity Low_complexity 1 32 0 29 78 0 0 chr4 31731770 31731834 -170596513 + AT_rich Low_complexity Low_complexity 1 64 0 2121 181 41 14 chr4 31732363 31732778 -170595569 + MSTB LTR MaLR 1 426 0 333 68 0 0 chr4 31733114 31733158 -170595189 + (CAAAA)n Simple_repeat Simple_repeat 4 47 0 23 33 0 0 chr4 31733202 31733232 -170595115 + AT_rich Low_complexity Low_complexity 1 30 0 188 0 74 0 chr4 31733635 31733662 -170594685 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1361 201 48 8 chr4 31733665 31733933 -170594414 - AluJb SINE Alu -27 285 7 377 250 24 18 chr4 31734443 31734607 -170593740 + (TA)n Simple_repeat Simple_repeat 2 166 0 24 0 0 0 chr4 31734649 31734673 -170593674 + AT_rich Low_complexity Low_complexity 1 24 0 23 33 0 0 chr4 31735311 31735341 -170593006 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr4 31735790 31735811 -170592536 + AT_rich Low_complexity Low_complexity 1 21 0 2202 95 3 0 chr4 31735849 31736145 -170592202 - AluSg SINE Alu -13 297 1 25 0 0 0 chr4 31737335 31737360 -170590987 + AT_rich Low_complexity Low_complexity 1 25 0 24 67 0 0 chr4 31737422 31737467 -170590880 + AT_rich Low_complexity Low_complexity 1 45 0 948 92 15 0 chr4 31737963 31738093 -170590254 - AluYb8 SINE Alu -186 132 1 2290 101 0 0 chr4 31739008 31739306 -170589041 + AluSc SINE Alu 5 302 -7 34 24 0 0 chr4 31739486 31739527 -170588820 + AT_rich Low_complexity Low_complexity 1 41 0 181 315 14 14 chr4 31739857 31739930 -170588417 + MIR SINE MIR 159 231 -31 1519 99 25 58 chr4 31740206 31740449 -170587898 + THE1A LTR MaLR 1 235 -120 3540 10 0 0 chr4 31740449 31740845 -170587502 - L1PA3 LINE L1 -304 5851 5456 2382 25 0 0 chr4 31740845 31741124 -170587223 + L1PA3 LINE L1 5876 6155 0 872 133 0 15 chr4 31741131 31741266 -170587081 + THE1A LTR MaLR 223 355 0 417 102 0 0 chr4 31741354 31741413 -170586934 + MADE1 DNA Mariner 22 80 0 2213 144 10 13 chr4 31741462 31741859 -170586488 - L1MA2 LINE L1 0 6304 5909 1508 254 74 52 chr4 31741921 31743107 -170585240 - L1M4c LINE L1 -3160 3055 1876 2077 179 5 47 chr4 31743114 31743498 -170584849 + MLT2D LTR ERVL 1 367 -47 408 20 0 0 chr4 31743498 31743547 -170584800 + (TA)n Simple_repeat Simple_repeat 2 50 0 2077 179 5 47 chr4 31743547 31743587 -170584760 + MLT2D LTR ERVL 367 407 -7 577 297 52 80 chr4 31743595 31743864 -170584483 - L1M4c LINE L1 -4535 1861 1586 2284 108 0 0 chr4 31743864 31744160 -170584187 + AluSc SINE Alu 1 296 -13 577 297 52 80 chr4 31744160 31745108 -170583239 - L1M4c LINE L1 -4810 1586 670 21 0 0 0 chr4 31745382 31745403 -170582944 + AT_rich Low_complexity Low_complexity 1 21 0 756 169 0 22 chr4 31745459 31745595 -170582752 - FLAM_C SINE Alu 0 133 1 3028 111 25 0 chr4 31746457 31746906 -170581441 + L1PB1 LINE L1 5691 6150 -1 1266 212 9 51 chr4 31746963 31747279 -170581068 - AluJo SINE Alu -7 305 3 335 342 61 53 chr4 31748972 31749200 -170579147 + MIR SINE MIR 33 262 0 368 167 0 13 chr4 31750274 31750352 -170577995 + GA-rich Low_complexity Low_complexity 4 80 0 286 109 87 0 chr4 31750986 31751078 -170577269 + (TA)n Simple_repeat Simple_repeat 2 101 0 347 250 80 43 chr4 31751674 31751862 -170576485 - LTR50 LTR ERVL -591 204 10 209 333 148 14 chr4 31751863 31752073 -170576274 - L3 LINE CR1 -467 1110 873 413 226 68 7 chr4 31752799 31752945 -170575402 - MER103 DNA DNA -10 156 2 1750 160 3 14 chr4 31753923 31754216 -170574131 + AluJb SINE Alu 3 292 -20 230 220 0 17 chr4 31754414 31754473 -170573874 - L1M4 LINE L1 -3551 2595 2538 * 3703 203 30 45 chr4 31754464 31755889 -170572458 + L1MA10 LINE L1 4928 6324 -10 231 188 0 0 chr4 31757227 31757275 -170571072 + (TATATG)n Simple_repeat Simple_repeat 1 48 0 229 258 11 11 chr4 31757275 31757364 -170570983 + L1MC4 LINE L1 6615 6703 -1339 21 71 0 0 chr4 31757387 31757429 -170570918 + AT_rich Low_complexity Low_complexity 1 42 0 283 223 115 69 chr4 31758101 31758231 -170570116 + MIR SINE MIR 79 214 -48 21 0 0 0 chr4 31758314 31758335 -170570012 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr4 31758482 31758513 -170569834 + AT_rich Low_complexity Low_complexity 1 31 0 2106 112 6 10 chr4 31758515 31758828 -170569519 + AluSx SINE Alu 1 312 0 1077 250 138 33 chr4 31759364 31759820 -170568527 - MLT1D LTR MaLR -8 497 1 35 63 0 0 chr4 31760254 31760317 -170568030 + AT_rich Low_complexity Low_complexity 1 63 0 2185 118 0 0 chr4 31760470 31760775 -170567572 + AluSx SINE Alu 1 305 -7 22 0 0 0 chr4 31761052 31761074 -170567273 + AT_rich Low_complexity Low_complexity 1 22 0 575 89 16 40 chr4 31761208 31761509 -170566838 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2218 115 0 3 chr4 31761509 31761822 -170566525 - AluSx SINE Alu 0 613 1 1416 213 66 49 chr4 31762817 31763361 -170564986 + MLT2A2 LTR ERVL 1 554 0 272 234 85 11 chr4 31763785 31763879 -170564468 - LTR16A1 LTR ERVL -43 414 314 1610 215 22 47 chr4 31764333 31764821 -170563526 - L1PA16 LINE L1 -786 5360 4885 4447 157 22 4 chr4 31764821 31765593 -170562754 + L1PA16 LINE L1 5381 6166 0 483 259 150 34 chr4 31766014 31766280 -170562067 + LTR33A LTR ERVL 223 519 -4 600 208 95 54 chr4 31766754 31766904 -170561443 - L1MD3 LINE L1 -19 7976 7813 1857 136 0 42 chr4 31766904 31767214 -170561133 + AluSg SINE Alu 1 297 -13 600 208 95 54 chr4 31767214 31767284 -170561063 - L1MD3 LINE L1 -182 7813 7747 264 100 0 0 chr4 31767315 31767355 -170560992 + (CCAA)n Simple_repeat Simple_repeat 4 43 0 251 303 80 37 chr4 31767379 31767567 -170560780 + HAL1 LINE L1 1412 1607 -900 272 328 102 21 chr4 31768174 31768360 -170559987 - LTR33 LTR ERVL 0 521 321 328 385 66 0 chr4 31768421 31768603 -170559744 - LTR33 LTR ERVL -309 212 19 1422 208 120 8 chr4 31769847 31770198 -170558149 - MLT1B LTR MaLR 0 390 1 278 278 66 28 chr4 31771397 31771609 -170556738 + L1 LINE L1 2401 2620 -3526 256 135 0 0 chr4 31771923 31771960 -170556387 + L1 LINE L1 3875 3911 -2235 22 80 0 0 chr4 31771966 31772016 -170556331 + AT_rich Low_complexity Low_complexity 1 50 0 473 292 151 39 chr4 31772072 31772503 -170555844 + L1 LINE L1 4035 4513 -1633 218 267 160 0 chr4 31773973 31774048 -170554299 + L2 LINE L2 3220 3306 -7 5457 123 25 6 chr4 31774943 31775839 -170552508 + L1MA1 LINE L1 1944 2856 -4709 * 9478 173 23 10 chr4 31775820 31776777 -170551570 + L1MA1 LINE L1 4627 5571 -2150 1885 135 0 52 chr4 31776777 31777104 -170551243 + AluSx SINE Alu 1 310 -2 9478 173 23 10 chr4 31777104 31778111 -170550236 + L1MA1 LINE L1 5571 6564 -1157 2265 92 3 3 chr4 31778111 31778416 -170549931 + AluSg SINE Alu 1 305 -5 9478 173 23 10 chr4 31778416 31779504 -170548843 + L1MA1 LINE L1 6564 7721 0 727 366 117 10 chr4 31779651 31780154 -170548193 - L2 LINE L2 -2728 586 30 200 383 65 0 chr4 31780235 31780342 -170548005 + MIR3 SINE MIR 65 178 -30 388 374 70 0 chr4 31780437 31780667 -170547680 - MIR SINE MIR 0 262 17 23 0 0 0 chr4 31780708 31780731 -170547616 + AT_rich Low_complexity Low_complexity 1 23 0 2190 66 28 3 chr4 31781490 31781776 -170546571 + AluSq SINE Alu 4 296 -17 231 36 0 0 chr4 31781785 31781813 -170546534 + (GGGGA)n Simple_repeat Simple_repeat 5 32 0 677 105 0 9 chr4 31781838 31781952 -170546395 + (GGAA)n Simple_repeat Simple_repeat 3 115 0 24 32 0 0 chr4 31782195 31782226 -170546121 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chr4 31782491 31782515 -170545832 + AT_rich Low_complexity Low_complexity 1 24 0 1955 132 60 30 chr4 31782875 31783239 -170545108 + THE1C LTR MaLR 1 375 0 698 244 35 0 chr4 31783829 31784001 -170544346 + MER20 DNA MER1_type 1 178 -41 1713 290 71 28 chr4 31784319 31785308 -170543039 - L1ME2 LINE L1 -243 5990 5045 1192 215 0 4 chr4 31785308 31785545 -170542802 + MER46A DNA MER2_type 1 236 0 1713 290 71 28 chr4 31785545 31785919 -170542428 - L1ME2 LINE L1 -1188 5045 4688 1984 130 0 13 chr4 31785919 31786220 -170542127 + AluSg SINE Alu 1 297 -13 1713 290 71 28 chr4 31786220 31786586 -170541761 - L1ME2 LINE L1 -1545 4688 4187 306 302 28 37 chr4 31786617 31786832 -170541515 - L1ME2 LINE L1 -2316 3899 3687 8507 122 18 0 chr4 31786905 31788157 -170540190 - HSMAR1 DNA Mariner -3 1284 11 301 300 82 24 chr4 31788194 31788364 -170539983 - L1ME2 LINE L1 -2620 3595 3416 950 163 0 0 chr4 31788467 31788614 -170539733 - AluSg/x SINE Alu -12 300 154 316 332 75 57 chr4 31788762 31788994 -170539353 - L1ME2 LINE L1 -4613 1783 1557 1710 190 0 0 chr4 31788994 31789283 -170539064 - AluSx SINE Alu -23 289 1 316 332 75 57 chr4 31789283 31790705 -170537642 - L1ME2 LINE L1 -4839 1557 100 1152 158 127 84 chr4 31791331 31791678 -170536669 + MSTA LTR MaLR 14 428 0 307 314 27 25 chr4 31793409 31793567 -170534780 + MIR SINE MIR 60 217 -45 2110 273 69 32 chr4 31794774 31794974 -170533373 - L1M1 LINE L1 -3953 3612 3421 249 33 0 0 chr4 31794974 31795004 -170533343 + (TG)n Simple_repeat Simple_repeat 1 30 0 2110 273 69 32 chr4 31795004 31795561 -170532786 - L1M1 LINE L1 -4144 3421 2886 212 0 36 0 chr4 31795561 31795589 -170532758 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2110 273 69 32 chr4 31795589 31796478 -170531869 - L1M1 LINE L1 -4679 2886 2097 1008 168 22 5 chr4 31796477 31796662 -170531685 - L1 LINE L1 -1906 4240 4053 * 1476 342 49 43 chr4 31796684 31797716 -170530631 - L1M1 LINE L1 -5241 2255 1217 1720 246 35 43 chr4 31799659 31800167 -170528180 + MER67D LTR ERV1 1 504 -10 424 263 26 64 chr4 31800596 31800752 -170527595 - MER69A DNA AcHobo -9 168 19 225 275 0 25 chr4 31801155 31801235 -170527112 + (TATATG)n Simple_repeat Simple_repeat 5 82 0 30 27 0 0 chr4 31801621 31801658 -170526689 + AT_rich Low_complexity Low_complexity 1 37 0 324 314 58 43 chr4 31802031 31802219 -170526128 + Charlie2 DNA MER1_type 26 216 -2646 186 167 0 0 chr4 31802220 31802256 -170526091 + (CATA)n Simple_repeat Simple_repeat 4 39 0 336 237 26 0 chr4 31802350 31802426 -170525921 + Charlie2 DNA MER1_type 1895 1972 -890 23 0 0 0 chr4 31802665 31802688 -170525659 + AT_rich Low_complexity Low_complexity 1 23 0 1193 173 90 12 chr4 31803577 31803869 -170524478 - L1MA4 LINE L1 -4 6296 5987 399 225 166 47 chr4 31804066 31804235 -170524112 - MIR SINE MIR -6 256 68 262 366 84 8 chr4 31804249 31804380 -170523967 + L2 LINE L2 3132 3272 0 32 43 0 0 chr4 31806043 31806089 -170522258 + AT_rich Low_complexity Low_complexity 1 46 0 31 88 0 0 chr4 31806306 31806386 -170521961 + AT_rich Low_complexity Low_complexity 1 80 0 1210 193 16 62 chr4 31806583 31806888 -170521459 - AluJo SINE Alu -10 302 12 22 0 0 0 chr4 31807364 31807386 -170520961 + AT_rich Low_complexity Low_complexity 1 22 0 1627 158 29 0 chr4 31807516 31807789 -170520558 + AluSx SINE Alu 21 301 -11 495 291 160 50 chr4 31807907 31808481 -170519866 - L1M4 LINE L1 -1397 4749 4113 39 65 0 28 chr4 31808585 31808692 -170519655 + AT_rich Low_complexity Low_complexity 1 104 0 294 193 36 72 chr4 31808816 31808899 -170519448 - MIR SINE MIR 0 262 183 42 0 0 0 chr4 31809148 31809190 -170519157 + AT_rich Low_complexity Low_complexity 1 42 0 652 329 68 49 chr4 31809284 31809998 -170518349 - L2 LINE L2 -8 3305 2577 272 138 58 23 chr4 31810230 31810317 -170518030 - L1MA7 LINE L1 -1 6290 6201 22 0 0 0 chr4 31810657 31810679 -170517668 + AT_rich Low_complexity Low_complexity 1 22 0 311 337 176 12 chr4 31811173 31811428 -170516919 + L2 LINE L2 2612 2908 -406 264 185 15 0 chr4 31811743 31811808 -170516539 - LTR66 LTR ERVL -151 459 394 234 274 0 0 chr4 31811808 31811859 -170516488 + (CATATA)n Simple_repeat Simple_repeat 4 54 0 1938 122 0 17 chr4 31811868 31812155 -170516192 + AluSx SINE Alu 3 284 -28 210 34 51 51 chr4 31812212 31812271 -170516076 + (TA)n Simple_repeat Simple_repeat 2 60 0 22 56 0 0 chr4 31812289 31812325 -170516022 + AT_rich Low_complexity Low_complexity 1 36 0 32 26 0 0 chr4 31812660 31812699 -170515648 + AT_rich Low_complexity Low_complexity 1 39 0 33 85 0 0 chr4 31813446 31813528 -170514819 + AT_rich Low_complexity Low_complexity 1 82 0 389 251 148 6 chr4 31813692 31813875 -170514472 + L1MC3 LINE L1 5761 5967 -199 519 204 39 0 chr4 31813875 31813978 -170514369 + U6 snRNA snRNA 1 107 0 1391 108 99 14 chr4 31814005 31814227 -170514120 - AluSq SINE Alu -72 241 1 219 36 0 0 chr4 31814246 31814274 -170514073 + (A)n Simple_repeat Simple_repeat 1 28 0 365 228 140 52 chr4 31814291 31814427 -170513920 + L1ME1 LINE L1 5963 6110 -56 34 24 0 0 chr4 31815010 31815051 -170513296 + AT_rich Low_complexity Low_complexity 1 41 0 30 59 0 0 chr4 31815814 31815865 -170512482 + AT_rich Low_complexity Low_complexity 1 51 0 23 54 0 0 chr4 31816238 31816275 -170512072 + AT_rich Low_complexity Low_complexity 1 37 0 358 287 91 7 chr4 31816805 31816948 -170511399 + MIR SINE MIR 108 262 0 22 0 0 0 chr4 31816968 31816990 -170511357 + AT_rich Low_complexity Low_complexity 1 22 0 207 326 0 23 chr4 31817113 31817199 -170511148 + CT-rich Low_complexity Low_complexity 2 85 0 244 281 59 84 chr4 31818367 31818570 -170509777 + L2 LINE L2 2594 2791 -523 200 94 31 0 chr4 31818774 31818806 -170509541 + (CAGAA)n Simple_repeat Simple_repeat 4 36 0 259 231 0 0 chr4 31819094 31819146 -170509201 + MER94 DNA DNA 1 52 -82 920 321 76 49 chr4 31819383 31820774 -170507573 + L1MEc LINE L1 82 1510 -4886 1171 286 60 44 chr4 31820876 31821744 -170506603 + L1MEc LINE L1 2698 3579 -2636 308 311 22 0 chr4 31821811 31821991 -170506356 + MER20B DNA MER1_type 515 698 -85 1567 198 58 9 chr4 31823013 31823357 -170504990 + MER47A DNA MER2_type 6 366 0 692 231 71 123 chr4 31824269 31824374 -170503973 + MER57A LTR ERV1 43 152 -251 638 248 45 20 chr4 31824374 31824576 -170503771 - MER6B DNA MER2_type -3 207 1 692 231 71 123 chr4 31824576 31824851 -170503496 + MER57A LTR ERV1 152 403 0 200 132 26 0 chr4 31825090 31825128 -170503219 + A-rich Low_complexity Low_complexity 2 40 0 1632 163 37 37 chr4 31825910 31826285 -170502062 - THE1C LTR MaLR 0 375 1 205 330 38 57 chr4 31826702 31826911 -170501436 + L2 LINE L2 3047 3251 -62 9491 89 17 0 chr4 31827347 31829466 -170498881 + L1PA7 LINE L1 4012 6146 -8 41 58 0 0 chr4 31829842 31829911 -170498436 + AT_rich Low_complexity Low_complexity 1 69 0 222 278 62 62 chr4 31830226 31830370 -170497977 - MIR SINE MIR 0 262 119 238 238 124 21 chr4 31830377 31830570 -170497777 - MER97a DNA MER1_type? -23 871 659 196 224 0 24 chr4 31830676 31830761 -170497586 + (CATA)n Simple_repeat Simple_repeat 1 83 0 267 150 0 0 chr4 31830908 31830948 -170497399 - 5S rRNA rRNA -81 40 1 3901 187 9 15 chr4 31830948 31831582 -170496765 + L1PA15 LINE L1 4623 5259 -906 1792 123 64 131 chr4 31831582 31831765 -170496582 + THE1B LTR MaLR 1 146 -218 2197 114 0 0 chr4 31831765 31832054 -170496293 - AluY SINE Alu -22 289 1 1792 123 64 131 chr4 31832054 31832260 -170496087 + THE1B LTR MaLR 146 364 0 3901 187 9 15 chr4 31832260 31832473 -170495874 + L1PA15 LINE L1 5259 5472 -693 2872 138 4 17 chr4 31832473 31832937 -170495410 + LTR22A LTR ERVK 1 458 0 3901 187 9 15 chr4 31832937 31833397 -170494950 + L1PA15 LINE L1 5472 5918 -247 1776 139 7 4 chr4 31833397 31833677 -170494670 + L1PA15 LINE L1 5868 6148 -17 3878 16 0 2 chr4 31833678 31834123 -170494224 + L1PA3 LINE L1 5698 6141 -14 541 338 68 18 chr4 31834567 31834786 -170493561 + L2 LINE L2 2841 3070 -243 183 80 0 0 chr4 31834827 31834852 -170493495 + (T)n Simple_repeat Simple_repeat 1 25 0 6500 9 0 1 chr4 31834855 31835594 -170492753 - L1HS LINE L1 -5 6150 5413 385 313 103 15 chr4 31835595 31835790 -170492557 + L2 LINE L2 3100 3311 -2 269 312 77 12 chr4 31836292 31836462 -170491885 - L1ME LINE L1 -374 5747 5567 271 345 62 34 chr4 31837057 31837169 -170491178 + MIR SINE MIR 31 153 -109 1617 220 42 11 chr4 31837169 31837547 -170490800 + MLT1B LTR MaLR 1 390 0 271 345 62 34 chr4 31837547 31837643 -170490704 + MIR SINE MIR 153 245 -17 474 336 32 18 chr4 31838075 31838292 -170490055 - MIR SINE MIR -12 250 31 25 0 0 0 chr4 31838426 31838451 -170489896 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr4 31839176 31839198 -170489149 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr4 31839273 31839301 -170489046 + AT_rich Low_complexity Low_complexity 1 28 0 2156 203 115 8 chr4 31839968 31840465 -170487882 + MER44D DNA MER2_type 1 605 0 1066 141 17 167 chr4 31840966 31841265 -170487082 - L1PA16 LINE L1 -19 6147 5894 284 290 10 0 chr4 31841375 31841475 -170486872 + (TA)n Simple_repeat Simple_repeat 1 101 0 180 152 0 0 chr4 31841495 31841528 -170486819 + GA-rich Low_complexity Low_complexity 1 33 0 279 315 11 22 chr4 31841938 31842030 -170486317 + L2 LINE L2 3181 3271 -1 335 231 154 0 chr4 31842636 31842740 -170485607 + LTR40a LTR ERVL 14 133 -386 2166 183 58 2 chr4 31842741 31843157 -170485190 - Tigger2 DNA MER2_type 0 2718 2280 271 186 51 17 chr4 31843161 31843220 -170485127 + MER8 DNA MER2_type 179 239 0 925 247 120 29 chr4 31843275 31843583 -170484764 + LTR40a LTR ERVL 182 517 -2 22 0 0 0 chr4 31844293 31844315 -170484032 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr4 31844575 31844600 -170483747 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr4 31844751 31844779 -170483568 + AT_rich Low_complexity Low_complexity 1 28 0 311 325 8 0 chr4 31844878 31844998 -170483349 + L1MEc LINE L1 2194 2314 -4082 4525 213 139 32 chr4 31845031 31846478 -170481869 - MER52A LTR ERV1 0 1755 1 501 286 61 81 chr4 31847131 31847276 -170481071 + L1MEc LINE L1 2669 2815 -3400 1624 188 3 3 chr4 31847276 31847592 -170480755 + AluJb SINE Alu 2 317 0 501 286 61 81 chr4 31847592 31847990 -170480357 + L1MEc LINE L1 2815 3202 -3013 1122 203 173 16 chr4 31848047 31848353 -170479994 + MLT1A1 LTR MaLR 1 354 -11 227 244 0 22 chr4 31848830 31848875 -170479472 + MLT1E2 LTR MaLR 1 44 -610 2168 144 8 27 chr4 31848879 31849248 -170479099 - THE1B LTR MaLR 0 364 3 9677 114 76 3 chr4 31849250 31850722 -170477625 - THE1B-int LTR MaLR 0 1580 2 2166 132 27 30 chr4 31850723 31851088 -170477259 - THE1B LTR MaLR 0 364 1 295 182 91 39 chr4 31851097 31851174 -170477173 + MLT1E2 LTR MaLR 87 167 -457 1452 276 31 5 chr4 31851202 31851586 -170476761 + MLT1E2 LTR MaLR 233 626 0 240 216 52 21 chr4 31851586 31851683 -170476664 + L1MEc LINE L1 3727 3826 -2389 189 347 65 16 chr4 31852251 31852375 -170475972 + L2 LINE L2 3179 3308 -5 185 269 19 0 chr4 31853916 31853968 -170474379 + L2 LINE L2 3261 3313 0 276 282 8 76 chr4 31854529 31854607 -170473740 - MIR SINE MIR -100 162 95 1626 209 33 17 chr4 31854607 31854966 -170473381 + MLT1A1 LTR MaLR 1 365 0 276 282 8 76 chr4 31854966 31855018 -170473329 - MIR SINE MIR -167 95 41 726 229 6 0 chr4 31855098 31855273 -170473074 - L1MB4 LINE L1 -1 6179 6004 22 0 0 0 chr4 31855471 31855493 -170472854 + AT_rich Low_complexity Low_complexity 1 22 0 358 293 48 29 chr4 31855722 31855995 -170472352 - L1MEd LINE L1 -4975 1144 867 419 365 84 59 chr4 31856023 31856420 -170471927 - L1MEd LINE L1 -5300 819 433 372 43 0 0 chr4 31856420 31856466 -170471881 + (TG)n Simple_repeat Simple_repeat 2 47 0 419 365 84 59 chr4 31856466 31856866 -170471481 - L1MEd LINE L1 -5686 433 2 295 247 195 45 chr4 31857576 31857730 -170470617 + MIR SINE MIR 56 232 -30 32 43 0 0 chr4 31857809 31857855 -170470492 + AT_rich Low_complexity Low_complexity 1 46 0 228 67 0 0 chr4 31858128 31858158 -170470189 + (TG)n Simple_repeat Simple_repeat 1 30 0 215 311 16 0 chr4 31858258 31858319 -170470028 + L2 LINE L2 3211 3272 0 1814 182 42 37 chr4 31859061 31859490 -170468857 + L1MA7 LINE L1 5855 6285 -6 271 288 136 41 chr4 31859532 31859994 -170468353 + HAL1 LINE L1 2002 2507 0 305 314 32 52 chr4 31860507 31860755 -170467592 - HAL1 LINE L1 -785 1722 1480 457 355 94 58 chr4 31860883 31861317 -170467030 - HAL1 LINE L1 -1443 1064 615 3849 163 12 32 chr4 31861324 31862049 -170466298 + MER50 LTR ERV1 1 711 -23 2483 214 18 32 chr4 31862699 31863261 -170465086 + MER41C LTR ERV1 1 554 0 1128 265 78 51 chr4 31863604 31863732 -170464615 + MLT2B1 LTR ERVL 1 124 -396 1576 177 53 31 chr4 31863732 31864088 -170464259 - THE1B LTR MaLR 0 364 1 1128 265 78 51 chr4 31864088 31864393 -170463954 + MLT2B1 LTR ERVL 124 446 -74 14020 45 1 1 chr4 31864407 31866922 -170461425 - L1PA5 LINE L1 0 6154 3635 13543 53 1 1 chr4 31866922 31868660 -170459687 + L1P LINE L1 1934 3672 -2474 251 255 0 0 chr4 31868677 31868728 -170459619 + CT-rich Low_complexity Low_complexity 3 53 0 21 0 0 0 chr4 31868815 31868836 -170459511 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr4 31870176 31870212 -170458135 + AT_rich Low_complexity Low_complexity 1 36 0 2008 164 44 54 chr4 31870378 31870806 -170457541 - Tigger2a DNA MER2_type 0 434 11 23 92 0 0 chr4 31871247 31871312 -170457035 + AT_rich Low_complexity Low_complexity 1 65 0 25 0 0 0 chr4 31871934 31871959 -170456388 + AT_rich Low_complexity Low_complexity 1 25 0 323 153 76 23 chr4 31872038 31872214 -170456133 + (TA)n Simple_repeat Simple_repeat 1 185 0 27 29 0 0 chr4 31872333 31872367 -170455980 + AT_rich Low_complexity Low_complexity 1 34 0 849 275 35 6 chr4 31872793 31873109 -170455238 + L1 LINE L1 2849 3173 -2973 27 0 0 0 chr4 31873196 31873223 -170455124 + AT_rich Low_complexity Low_complexity 1 27 0 29 28 0 0 chr4 31873573 31873609 -170454738 + AT_rich Low_complexity Low_complexity 1 36 0 30 93 0 0 chr4 31873912 31873998 -170454349 + AT_rich Low_complexity Low_complexity 1 86 0 334 239 45 11 chr4 31874270 31874358 -170453989 + LTR33 LTR ERVL 429 519 -2 42 57 0 0 chr4 31876716 31876786 -170451561 + AT_rich Low_complexity Low_complexity 1 70 0 313 143 0 0 chr4 31877804 31877853 -170450494 - MLT2C1 LTR ERVL 0 397 349 1660 231 55 30 chr4 31877880 31878352 -170449995 + MER76 LTR ERV 205 688 0 193 404 60 48 chr4 31878629 31878963 -170449384 - L2 LINE L2 -2 3270 2933 276 368 37 7 chr4 31879262 31879398 -170448949 + MER5B DNA MER1_type 2 141 -37 41 58 0 0 chr4 31880307 31880376 -170447971 + AT_rich Low_complexity Low_complexity 1 69 0 1121 271 103 41 chr4 31880667 31881250 -170447097 + MLT1E3 LTR MaLR 5 623 -1 692 278 6 6 chr4 31882670 31882850 -170445497 + MLT1E2 LTR MaLR 15 194 -432 3706 217 25 41 chr4 31882851 31882984 -170445363 + L1 LINE L1 3212 3346 -2800 1566 213 3 0 chr4 31882984 31883280 -170445067 + AluJo SINE Alu 13 309 -3 3706 217 25 41 chr4 31883280 31884131 -170444216 + L1 LINE L1 3346 4181 -1965 1327 248 90 11 chr4 31884131 31884510 -170443837 + MLT1E2 LTR MaLR 218 626 0 180 0 0 0 chr4 31884608 31884628 -170443719 + (T)n Simple_repeat Simple_repeat 1 20 0 215 269 0 0 chr4 31885165 31885217 -170443130 + CT-rich Low_complexity Low_complexity 1 52 0 21 0 0 0 chr4 31885795 31885816 -170442531 + AT_rich Low_complexity Low_complexity 1 21 0 2069 157 86 5 chr4 31886352 31886748 -170441599 - MSTA LTR MaLR 0 428 1 247 367 47 70 chr4 31887995 31888123 -170440224 + L2 LINE L2 3143 3267 -5 3424 75 5 0 chr4 31888902 31889479 -170438868 - L1PA6 LINE L1 -451 5703 5125 3290 89 0 2 chr4 31889479 31889915 -170438432 + L1PA6 LINE L1 5696 6143 -11 801 266 114 4 chr4 31890157 31890420 -170437927 - LTR41 LTR ERVL -470 303 12 23 68 0 0 chr4 31890851 31890895 -170437452 + AT_rich Low_complexity Low_complexity 1 44 0 29 0 0 0 chr4 31890986 31891015 -170437332 + AT_rich Low_complexity Low_complexity 1 29 0 24 32 0 0 chr4 31891124 31891155 -170437192 + AT_rich Low_complexity Low_complexity 1 31 0 2582 140 0 64 chr4 31893845 31894430 -170433917 - MER1A DNA MER1_type -5 524 1 220 378 12 12 chr4 31894820 31894902 -170433445 + L2 LINE L2 2895 2976 -338 313 230 159 18 chr4 31895005 31895118 -170433229 + L2 LINE L2 3137 3265 -7 4462 165 34 21 chr4 31895516 31896400 -170431947 - L1PB4 LINE L1 -3 6468 5574 * 11703 129 18 62 chr4 31896378 31899379 -170428968 - L1PB4 LINE L1 -3487 2974 1 1323 290 41 13 chr4 31899385 31900338 -170428009 - L1ME LINE L1 -400 5766 4796 1453 181 105 14 chr4 31900345 31900698 -170427649 - L1MA4 LINE L1 -1 6299 5915 594 203 0 8 chr4 31900700 31900818 -170427529 - L1MA10 LINE L1 -9 6325 6209 * 3243 182 45 56 chr4 31900812 31901635 -170426712 - L1MB1 LINE L1 -8 6160 5347 744 277 70 34 chr4 31901634 31902049 -170426298 - L1MB1 LINE L1 -1833 4313 3884 * 1061 311 54 62 chr4 31902084 31902715 -170425632 - MLT1E2 LTR MaLR 0 626 1 719 267 37 32 chr4 31902955 31903330 -170425017 + L1MEc LINE L1 1913 2289 -4107 852 271 39 9 chr4 31903330 31903559 -170424788 + MSTD LTR MaLR 161 396 0 180 0 0 0 chr4 31904494 31904514 -170423833 + (CAT)n Simple_repeat Simple_repeat 1 20 0 285 280 0 0 chr4 31904555 31904630 -170423717 + (AAGTG)n Simple_repeat Simple_repeat 3 77 0 186 143 0 0 chr4 31905023 31905058 -170423289 + (TAA)n Simple_repeat Simple_repeat 2 36 0 28 0 0 0 chr4 31905096 31905124 -170423223 + AT_rich Low_complexity Low_complexity 1 28 0 1727 105 19 8 chr4 31905492 31905759 -170422588 + AluSx SINE Alu 36 305 -7 182 194 0 0 chr4 31905957 31905988 -170422359 + L2 LINE L2 2220 2250 -1064 25 51 0 0 chr4 31906059 31906098 -170422249 + AT_rich Low_complexity Low_complexity 1 39 0 864 345 69 35 chr4 31908734 31909274 -170419073 - L2 LINE L2 0 3313 2756 2165 97 7 3 chr4 31909345 31909644 -170418703 + AluSx SINE Alu 1 300 -12 212 407 12 12 chr4 31909794 31909956 -170418391 + L2 LINE L2 3145 3306 -7 884 228 9 26 chr4 31910174 31910402 -170417945 - MER58A DNA MER1_type 0 224 1 359 228 69 30 chr4 31913528 31913629 -170414718 + MIR SINE MIR 127 231 -31 230 272 130 11 chr4 31913747 31913839 -170414508 + L2 LINE L2 3117 3219 -94 2753 108 49 5 chr4 31914624 31915009 -170413338 + MLT2A1 LTR ERVL 1 408 -36 243 0 0 0 chr4 31915009 31915036 -170413311 + (CA)n Simple_repeat Simple_repeat 2 28 0 2753 108 49 5 chr4 31915036 31915075 -170413272 + MLT2A1 LTR ERVL 408 444 0 1728 147 41 75 chr4 31915110 31915323 -170413024 - THE1C LTR MaLR 0 375 179 5017 67 5 0 chr4 31915323 31915978 -170412369 - L1PA7 LINE L1 -2 6152 5495 1728 147 41 75 chr4 31915978 31916152 -170412195 - THE1C LTR MaLR -196 179 1 1061 242 46 0 chr4 31916412 31916652 -170411695 - MLT1C LTR MaLR -2 465 215 206 0 0 65 chr4 31917220 31917251 -170411096 + (TTTTTA)n Simple_repeat Simple_repeat 4 32 0 27 49 0 0 chr4 31917328 31917369 -170410978 + AT_rich Low_complexity Low_complexity 1 41 0 1723 166 6 35 chr4 31917401 31917715 -170410632 + AluSx SINE Alu 1 305 -7 180 188 43 0 chr4 31919202 31919271 -170409076 + (TA)n Simple_repeat Simple_repeat 2 73 0 2224 118 0 0 chr4 31919319 31919623 -170408724 + AluSx SINE Alu 1 304 -8 1224 218 112 29 chr4 31920008 31920348 -170407999 - MLT1B LTR MaLR -2 388 21 27 0 0 0 chr4 31920737 31920764 -170407583 + AT_rich Low_complexity Low_complexity 1 27 0 1860 53 68 34 chr4 31921895 31922159 -170406188 + AluY SINE Alu 37 309 -2 33 73 0 0 chr4 31923376 31923444 -170404903 + AT_rich Low_complexity Low_complexity 1 68 0 417 287 15 46 chr4 31923444 31923639 -170404708 + L1MD2 LINE L1 4843 5031 -1115 8499 116 12 22 chr4 31923647 31923738 -170404609 + HSMAR1 DNA Mariner 9 99 -1188 1896 150 3 13 chr4 31923738 31924044 -170404303 - AluSx SINE Alu -4 308 6 8499 116 12 22 chr4 31924044 31925244 -170403103 + HSMAR1 DNA Mariner 99 1287 0 1018 260 85 9 chr4 31925253 31926232 -170402115 + L1MD2 LINE L1 5039 6142 -22 25 0 0 0 chr4 31926261 31926286 -170402061 + AT_rich Low_complexity Low_complexity 1 25 0 232 263 88 0 chr4 31927387 31927444 -170400903 + L2 LINE L2 3211 3272 0 264 303 20 0 chr4 31927848 31927947 -170400400 - L1M4 LINE L1 -1563 4583 4483 23 54 0 0 chr4 31928035 31928072 -170400275 + AT_rich Low_complexity Low_complexity 1 37 0 314 307 0 0 chr4 31928636 31928724 -170399623 + MIR SINE MIR 175 262 0 2230 119 0 0 chr4 31929045 31929357 -170398990 + AluSx SINE Alu 1 312 0 571 283 67 0 chr4 31929500 31929680 -170398667 + MIR SINE MIR 50 241 -21 23 54 0 0 chr4 31930128 31930165 -170398182 + AT_rich Low_complexity Low_complexity 1 37 0 24 53 0 0 chr4 31930309 31930347 -170398000 + AT_rich Low_complexity Low_complexity 1 38 0 455 312 83 25 chr4 31930491 31930853 -170397494 - L1M4 LINE L1 -3094 3052 2670 2406 204 2 8 chr4 31930855 31931336 -170397011 - L1PA16 LINE L1 0 6166 5689 2540 138 20 20 chr4 31931337 31931821 -170396526 + L1PA16 LINE L1 5217 5700 -466 2240 74 0 0 chr4 31933009 31933291 -170395056 + AluY SINE Alu 1 282 -29 307 0 0 0 chr4 31933291 31933325 -170395022 + (CAAAA)n Simple_repeat Simple_repeat 2 110 0 216 97 0 0 chr4 31933489 31933506 -170394841 + (TG)n Simple_repeat Simple_repeat 1 48 0 216 97 0 0 chr4 31933506 31933537 -170394810 + (TG)n Simple_repeat Simple_repeat 2 32 0 554 298 75 4 chr4 31933948 31934176 -170394171 - MLT1J LTR MaLR -267 244 1 2016 112 3 7 chr4 31934176 31934489 -170393858 - AluSx SINE Alu 0 312 1 233 214 125 0 chr4 31934916 31934972 -170393375 - L2 LINE L2 -61 3252 3190 272 341 96 7 chr4 31934973 31935108 -170393239 - L3 LINE CR1 -5 1572 1426 648 356 40 21 chr4 31935477 31935856 -170392491 - L3 LINE CR1 -151 1426 1041 2335 58 3 29 chr4 31937119 31937430 -170390917 + AluY SINE Alu 1 303 -8 4069 190 7 28 chr4 31937430 31937454 -170390893 + L1PB4 LINE L1 5322 5345 -811 3344 85 22 30 chr4 31937454 31937958 -170390389 - L1PA10 LINE L1 -1 6167 5668 4069 190 7 28 chr4 31937958 31938781 -170389566 + L1PB4 LINE L1 5345 6151 -5 1175 305 77 7 chr4 31939118 31939686 -170388661 + MLT1E LTR MaLR 3 593 0 1384 215 203 6 chr4 31940193 31940542 -170387805 - MER47B DNA MER2_type 0 418 1 1651 187 3 13 chr4 31944685 31945000 -170383347 - AluJo SINE Alu 0 312 1 23 33 0 0 chr4 31945763 31945793 -170382554 + AT_rich Low_complexity Low_complexity 1 30 0 2311 97 0 3 chr4 31945898 31946208 -170382139 - AluSc SINE Alu 0 309 1 28 48 0 0 chr4 31946823 31946865 -170381482 + AT_rich Low_complexity Low_complexity 1 42 0 212 301 186 26 chr4 31947083 31947196 -170381151 + MIR SINE MIR 21 151 -57 721 237 16 31 chr4 31948029 31948223 -170380124 - MER3 DNA MER1_type -12 197 7 241 309 84 91 chr4 31948587 31949175 -170379172 - L2 LINE L2 -524 2790 2205 2285 100 3 0 chr4 31949175 31949485 -170378862 + AluSx SINE Alu 1 311 -1 241 309 84 91 chr4 31949485 31949526 -170378821 - L2 LINE L2 -1109 2205 2165 1972 148 0 0 chr4 31949665 31949962 -170378385 - AluSq SINE Alu -16 297 1 188 146 0 21 chr4 31950000 31950048 -170378299 + (GAAA)n Simple_repeat Simple_repeat 2 48 0 1227 176 0 42 chr4 31951787 31952025 -170376322 + AluJb SINE Alu 83 310 -2 651 21 32 11 chr4 31953022 31953115 -170375232 + (TAGA)n Simple_repeat Simple_repeat 4 98 0 22 0 0 0 chr4 31953467 31953489 -170374858 + AT_rich Low_complexity Low_complexity 1 22 0 29 28 0 0 chr4 31954023 31954059 -170374288 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr4 31954400 31954422 -170373925 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr4 31954646 31954669 -170373678 + AT_rich Low_complexity Low_complexity 1 23 0 1064 133 79 49 chr4 31954821 31955024 -170373323 + Tigger2a DNA MER2_type 5 213 -221 4433 211 19 2 chr4 31955072 31956415 -170371932 + L1PA16 LINE L1 3981 5449 -717 1510 166 100 31 chr4 31956415 31956765 -170371582 - THE1C LTR MaLR 0 375 2 3746 154 52 20 chr4 31956765 31957455 -170370892 + L1PA16 LINE L1 5444 6155 -11 266 314 17 25 chr4 31959147 31959265 -170369082 - MLT1J1 LTR MaLR -329 117 1 24 53 0 0 chr4 31959345 31959383 -170368964 + AT_rich Low_complexity Low_complexity 1 38 0 1035 290 37 47 chr4 31959891 31960295 -170368052 + MLT1E2 LTR MaLR 1 400 -226 676 52 21 0 chr4 31960295 31960391 -170367956 + AluY SINE Alu 204 301 -10 919 224 14 29 chr4 31960414 31960624 -170367723 + MLT1E2 LTR MaLR 414 620 -6 28 29 0 0 chr4 31961181 31961216 -170367131 + AT_rich Low_complexity Low_complexity 1 35 0 256 213 53 27 chr4 31962007 31962082 -170366265 - L1MC4 LINE L1 -1136 6702 6573 2861 13 0 0 chr4 31962747 31963064 -170365283 - AluYb8 SINE Alu -1 317 1 36 0 0 0 chr4 31964241 31964277 -170364070 + AT_rich Low_complexity Low_complexity 1 36 0 435 38 0 0 chr4 31964505 31964558 -170363789 + (TA)n Simple_repeat Simple_repeat 1 53 0 207 329 0 66 chr4 31964733 31964809 -170363538 + L2 LINE L2 3199 3269 -3 404 310 89 71 chr4 31966064 31966789 -170361558 + L1M4 LINE L1 2830 3597 -2549 848 253 146 61 chr4 31966789 31967231 -170361116 + MLT2B1 LTR ERVL 2 489 -31 285 29 0 0 chr4 31967231 31967265 -170361082 + (CA)n Simple_repeat Simple_repeat 1 34 0 848 253 146 61 chr4 31967265 31967300 -170361047 + MLT2B1 LTR ERVL 489 520 0 404 310 89 71 chr4 31967300 31967494 -170360853 + L1M4 LINE L1 3597 3786 -2360 2618 265 37 39 chr4 31967509 31968064 -170360283 + L1MC4 LINE L1 7004 7559 -483 1787 149 0 31 chr4 31968064 31968352 -170359995 + AluSg SINE Alu 1 279 -31 207 0 0 0 chr4 31968355 31968378 -170359969 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2618 265 37 39 chr4 31968378 31968857 -170359490 + L1MC4 LINE L1 7561 8040 -2 1738 54 0 14 chr4 31969158 31969412 -170358935 + AluY SINE Alu 66 316 0 1927 194 48 139 chr4 31969563 31970166 -170358181 - MER21A LTR ERV1 -25 906 380 2419 70 0 10 chr4 31970166 31970480 -170357867 + AluY SINE Alu 1 311 0 1927 194 48 139 chr4 31970480 31970608 -170357739 - MER21A LTR ERV1 -551 380 242 905 176 16 106 chr4 31970608 31970853 -170357494 + LTR9 LTR ERV1 1 223 -389 667 68 0 0 chr4 31970853 31970941 -170357406 - AluSg/x SINE Alu -13 299 212 281 376 15 8 chr4 31970971 31971104 -170357243 + MER61E LTR ERV1 211 344 -225 * 700 216 112 43 chr4 31971096 31971374 -170356973 + LTR9 LTR ERV1 316 612 0 729 174 0 0 chr4 31971375 31971490 -170356857 - MER39 LTR ERV1 -334 373 259 547 124 7 163 chr4 31971465 31971618 -170356729 - MER21A LTR ERV1 -733 198 70 * 384 279 21 20 chr4 31971735 31971893 -170356454 + L1ME3 LINE L1 5973 6138 -24 21 0 0 0 chr4 31972169 31972190 -170356157 + AT_rich Low_complexity Low_complexity 1 21 0 2065 74 0 4 chr4 31973194 31973464 -170354883 - AluY SINE Alu -6 305 37 2155 201 111 18 chr4 31974589 31975056 -170353291 + MLT2B3 LTR ERVL 1 520 -34 387 0 0 0 chr4 31975056 31975099 -170353248 + (TCTA)n Simple_repeat Simple_repeat 3 45 0 2155 201 111 18 chr4 31975099 31975138 -170353209 + MLT2B3 LTR ERVL 520 554 0 436 163 0 0 chr4 31975668 31975748 -170352599 - MADE1 DNA Mariner 0 80 1 18338 118 8 14 chr4 31976810 31980083 -170348264 + L1PA7 LINE L1 727 3999 -2462 9674 103 12 1 chr4 31980091 31982301 -170346046 + L1PA7 LINE L1 4243 6469 0 23 54 0 0 chr4 31983145 31983182 -170345165 + AT_rich Low_complexity Low_complexity 1 37 0 224 71 48 0 chr4 31984663 31984705 -170343642 + T-rich Low_complexity Low_complexity 2 45 0 1540 165 4 0 chr4 31984731 31984974 -170343373 - AluSx SINE Alu -66 246 3 22 0 0 0 chr4 31984985 31985007 -170343340 + AT_rich Low_complexity Low_complexity 1 22 0 299 225 25 0 chr4 31986839 31986919 -170341428 + (TA)n Simple_repeat Simple_repeat 2 83 0 12804 170 25 6 chr4 31986919 31989291 -170339056 + Tigger1 DNA MER2_type 1 2418 0 32 43 0 0 chr4 31989609 31989655 -170338692 + AT_rich Low_complexity Low_complexity 1 46 0 32 26 0 0 chr4 31991132 31991171 -170337176 + AT_rich Low_complexity Low_complexity 1 39 0 1360 210 0 41 chr4 31991775 31992105 -170336242 + AluJo SINE Alu 4 321 0 1748 167 7 0 chr4 31992228 31992534 -170335813 + AluSx SINE Alu 1 308 0 302 323 92 28 chr4 31992648 31992865 -170335482 + L1M4 LINE L1 3480 3710 -2436 279 418 46 8 chr4 31993208 31993447 -170334900 + MIR SINE MIR 3 250 -12 1750 88 0 0 chr4 31993554 31993782 -170334565 - AluSg/x SINE Alu -4 308 81 180 111 0 0 chr4 31994426 31994453 -170333894 + (T)n Simple_repeat Simple_repeat 1 27 0 208 418 11 0 chr4 31994826 31994917 -170333430 - L2 LINE L2 -331 2982 2891 1102 238 43 68 chr4 31995384 31995706 -170332641 - MLT1D LTR MaLR -13 492 163 2186 108 3 0 chr4 31995706 31996001 -170332346 + AluSg SINE Alu 1 296 -14 1102 238 43 68 chr4 31996001 31996027 -170332320 - MLT1D LTR MaLR -342 163 138 240 35 0 0 chr4 31996027 31996056 -170332291 + (TTTTG)n Simple_repeat Simple_repeat 1 29 0 1102 238 43 68 chr4 31996056 31996230 -170332117 - MLT1D LTR MaLR -367 138 1 202 154 0 26 chr4 31996283 31996322 -170332025 + (TAA)n Simple_repeat Simple_repeat 2 39 0 22 0 0 0 chr4 31996940 31996962 -170331385 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4 31997520 31997541 -170330806 + AT_rich Low_complexity Low_complexity 1 21 0 1164 208 140 4 chr4 31997542 31997792 -170330555 + AluJb SINE Alu 1 284 -18 394 106 76 0 chr4 31997804 31997870 -170330477 + MADE1 DNA Mariner 3 73 -7 384 22 0 0 chr4 31998581 31998626 -170329721 + (TG)n Simple_repeat Simple_repeat 1 45 0 184 229 12 108 chr4 31999766 31999849 -170328498 - MIR SINE MIR -59 203 129 1189 48 0 0 chr4 32000537 32000682 -170327665 + AluY SINE Alu 1 145 -166 21 57 0 0 chr4 32001015 32001050 -170327297 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr4 32001249 32001273 -170327074 + AT_rich Low_complexity Low_complexity 1 24 0 298 353 139 5 chr4 32002238 32002439 -170325908 - MIR SINE MIR -1 261 34 2332 73 3 0 chr4 32002712 32003012 -170325335 + AluY SINE Alu 1 301 -10 56 33 0 0 chr4 32003618 32003678 -170324669 + AT_rich Low_complexity Low_complexity 1 60 0 1195 123 0 0 chr4 32004077 32004248 -170324099 - AluSp SINE Alu -6 307 137 25 51 0 0 chr4 32004280 32004319 -170324028 + AT_rich Low_complexity Low_complexity 1 39 0 192 77 0 0 chr4 32004677 32004703 -170323644 + (TG)n Simple_repeat Simple_repeat 2 27 0 1871 103 60 21 chr4 32006642 32006923 -170321424 + AluSx SINE Alu 9 300 -12 808 248 57 30 chr4 32007547 32007777 -170320570 + MIR SINE MIR 1 236 -26 2645 35 0 0 chr4 32009411 32009721 -170318626 - AluY SINE Alu -1 310 1 1408 103 0 77 chr4 32009721 32009971 -170318376 - L1PA13 LINE L1 -13 6150 5919 283 270 0 14 chr4 32010852 32010926 -170317421 - MER94 DNA DNA -23 111 39 2731 28 0 3 chr4 32012819 32013143 -170315204 - L1PA2 LINE L1 -6 6149 5827 219 139 0 0 chr4 32013272 32013308 -170315039 + (TG)n Simple_repeat Simple_repeat 1 36 0 338 303 5 96 chr4 32013409 32013627 -170314720 - MIR SINE MIR -2 260 63 725 278 27 36 chr4 32013662 32013885 -170314462 - MER58A DNA MER1_type -2 222 2 244 319 57 43 chr4 32014915 32015056 -170313291 - MLT1I LTR MaLR -266 143 1 649 250 11 22 chr4 32015242 32015426 -170312921 + L1M2a LINE L1 3 184 -6984 * 1005 228 50 0 chr4 32015420 32015661 -170312686 + L1MA6 LINE L1 6034 6286 -14 2370 66 3 3 chr4 32015661 32015966 -170312381 - AluY SINE Alu -6 305 1 284 374 50 0 chr4 32016367 32016546 -170311801 + MIR SINE MIR 74 261 -1 1539 201 3 26 chr4 32017037 32017345 -170311002 + AluJo SINE Alu 1 301 -11 2319 72 7 0 chr4 32018484 32018777 -170309570 + AluY SINE Alu 1 295 -16 357 338 46 72 chr4 32019343 32019757 -170308590 - L1M2 LINE L1 -5445 1404 1002 330 154 39 0 chr4 32019942 32020020 -170308327 + (TA)n Simple_repeat Simple_repeat 2 82 0 313 279 0 0 chr4 32020025 32020104 -170308243 - L1MC4 LINE L1 -1340 6702 6624 5607 157 27 12 chr4 32020654 32021728 -170306619 + L1MA4A LINE L1 5207 6297 -6 549 333 98 20 chr4 32022525 32022976 -170305371 + MLT1H1 LTR MaLR 37 522 -33 372 103 13 39 chr4 32023418 32023496 -170304851 + (TTTC)n Simple_repeat Simple_repeat 1 76 0 1664 132 114 0 chr4 32023521 32023793 -170304554 - AluSx SINE Alu -9 303 1 245 191 96 78 chr4 32023980 32024095 -170304252 - MIR SINE MIR -41 221 105 2209 223 39 4 chr4 32024567 32025060 -170303287 + LTR53 LTR ERVL 10 519 0 1070 169 11 0 chr4 32025790 32025974 -170302373 + THE1C LTR MaLR 3 188 -187 480 129 0 0 chr4 32025995 32026065 -170302282 + THE1C LTR MaLR 306 375 0 8240 205 36 39 chr4 32026065 32027644 -170300703 + THE1C-int LTR MaLR 1 1574 -6 1443 188 63 28 chr4 32027650 32028012 -170300335 + THE1C LTR MaLR 1 375 0 1212 230 93 93 chr4 32029341 32029929 -170298418 - MLT1E2 LTR MaLR -4 622 59 2064 184 29 24 chr4 32029990 32030408 -170297939 - MSTB LTR MaLR -6 420 1 23 86 0 0 chr4 32031274 32031332 -170297015 + AT_rich Low_complexity Low_complexity 1 58 0 23 0 0 0 chr4 32031614 32031637 -170296710 + AT_rich Low_complexity Low_complexity 1 23 0 569 278 123 71 chr4 32031673 32032097 -170296250 + MLT1H LTR MaLR 104 549 0 26 50 0 0 chr4 32032097 32032137 -170296210 + AT_rich Low_complexity Low_complexity 1 40 0 2297 138 45 24 chr4 32032251 32032670 -170295677 - MSTA LTR MaLR 0 428 1 243 0 0 0 chr4 32032686 32032713 -170295634 + (TG)n Simple_repeat Simple_repeat 2 28 0 1678 142 4 8 chr4 32032739 32032999 -170295348 - AluSq SINE Alu -53 260 2 396 208 13 0 chr4 32033550 32033627 -170294720 - MER31A LTR ERV1 0 485 408 2453 171 17 28 chr4 32033628 32034097 -170294250 + MER31A LTR ERV1 22 485 0 236 329 0 24 chr4 32034190 32034272 -170294075 + L2 LINE L2 2489 2568 -746 306 237 93 21 chr4 32034633 32034730 -170293617 + L1M4 LINE L1 3035 3138 -3008 205 345 51 51 chr4 32035112 32035126 -170293221 - L2 LINE L2 -2192 1122 1109 225 0 0 0 chr4 32035126 32035151 -170293196 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 205 345 51 51 chr4 32035151 32035278 -170293069 - L2 LINE L2 -2205 1109 978 2005 103 23 20 chr4 32035278 32035579 -170292768 + AluSq SINE Alu 1 302 -11 205 345 51 51 chr4 32035579 32035633 -170292714 - L2 LINE L2 -2335 979 926 226 351 9 35 chr4 32036247 32036361 -170291986 + L2 LINE L2 3155 3265 -7 930 194 35 30 chr4 32037774 32038006 -170290341 - L1MA4 LINE L1 -1 6299 6067 194 36 18 91 chr4 32039397 32039452 -170288895 + (TAAA)n Simple_repeat Simple_repeat 3 53 0 68 28 0 0 chr4 32039469 32039541 -170288806 + AT_rich Low_complexity Low_complexity 1 72 0 242 237 0 0 chr4 32039541 32039617 -170288730 + A-rich Low_complexity Low_complexity 1 76 0 317 263 0 0 chr4 32039673 32039730 -170288617 + A-rich Low_complexity Low_complexity 1 57 0 34 0 0 0 chr4 32039730 32039764 -170288583 + AT_rich Low_complexity Low_complexity 1 34 0 237 229 0 31 chr4 32039768 32039864 -170288483 + A-rich Low_complexity Low_complexity 1 93 0 24 32 0 0 chr4 32040621 32040652 -170287695 + AT_rich Low_complexity Low_complexity 1 31 0 1829 180 36 30 chr4 32041059 32041421 -170286926 + THE1B LTR MaLR 1 364 0 1054 69 0 0 chr4 32041672 32041816 -170286531 - L1PA4 LINE L1 -1 6154 6011 342 0 0 0 chr4 32043792 32043830 -170284517 + (TG)n Simple_repeat Simple_repeat 1 38 0 1061 147 0 0 chr4 32045311 32045468 -170282879 + FRAM SINE Alu 1 40 0 923 198 81 127 chr4 32046102 32046210 -170282137 + MLT1B LTR MaLR 1 112 -278 1554 194 66 0 chr4 32046210 32046499 -170281848 + AluJb SINE Alu 3 310 -2 923 198 81 127 chr4 32046499 32046799 -170281548 + MLT1B LTR MaLR 112 390 0 2330 194 30 42 chr4 32046821 32047321 -170281026 + Tigger7 DNA MER2_type 10 503 -230 408 236 0 66 chr4 32047315 32047421 -170280926 + Tigger7 DNA MER2_type 2488 2586 -1 * 1031 267 105 34 chr4 32047875 32048712 -170279635 + L1ME1 LINE L1 1194 2277 -4330 1829 161 120 28 chr4 32048713 32049105 -170279242 - MSTA LTR MaLR 0 428 1 8687 158 29 20 chr4 32049105 32050670 -170277677 - MSTA-int LTR MaLR 0 1580 2 1755 167 61 19 chr4 32050671 32051030 -170277317 - THE1C LTR MaLR 0 375 2 1338 168 0 0 chr4 32051030 32051256 -170277091 - MSTA-int LTR MaLR -1352 228 3 1598 199 134 11 chr4 32051258 32051639 -170276708 - MSTA LTR MaLR 0 428 1 4241 265 62 68 chr4 32053875 32054749 -170273598 + L1ME1 LINE L1 2424 3302 -3124 1346 211 28 10 chr4 32054749 32055038 -170273309 + AluJb SINE Alu 1 294 -18 4241 265 62 68 chr4 32055038 32056897 -170271450 + L1ME1 LINE L1 3302 5097 -1329 * 4580 245 59 11 chr4 32056889 32058992 -170269355 + L1MC3 LINE L1 4443 5387 -759 188 163 23 0 chr4 32058992 32059035 -170269312 + (TA)n Simple_repeat Simple_repeat 2 45 0 2901 96 0 8 chr4 32059036 32059433 -170268914 + MLT2A1 LTR ERVL 5 398 -46 305 82 20 0 chr4 32059505 32059554 -170268793 + (TC)n Simple_repeat Simple_repeat 2 51 0 201 154 0 0 chr4 32059553 32059592 -170268755 + (TA)n Simple_repeat Simple_repeat 1 39 0 * 6227 73 26 9 chr4 32059633 32060485 -170267862 + HERVL-A1 LTR ERVL 232 1097 -4557 762 252 35 108 chr4 32060485 32060602 -170267745 + L1ME1 LINE L1 5929 6053 -393 1785 72 47 0 chr4 32060602 32060875 -170267472 + AluY SINE Alu 39 322 0 762 252 35 108 chr4 32060875 32061304 -170267043 + L1ME1 LINE L1 6053 6436 -10 26 30 0 0 chr4 32061569 32061602 -170266745 + AT_rich Low_complexity Low_complexity 1 33 0 358 380 51 25 chr4 32061678 32062033 -170266314 - L3 LINE CR1 -81 1496 1133 190 216 27 0 chr4 32063494 32063568 -170264779 + CT-rich Low_complexity Low_complexity 2 77 0 181 407 97 4 chr4 32064306 32064532 -170263815 + L2 LINE L2 2419 2665 -649 2206 81 0 14 chr4 32066250 32066565 -170261782 - AluSg SINE Alu 0 310 2 25 0 0 0 chr4 32066731 32066756 -170261591 + AT_rich Low_complexity Low_complexity 1 25 0 3059 158 81 7 chr4 32067329 32067919 -170260428 + L1PA16 LINE L1 5533 6166 0 183 188 62 0 chr4 32068063 32068111 -170260236 - MIR SINE MIR -55 207 157 28 29 0 0 chr4 32068181 32068216 -170260131 + AT_rich Low_complexity Low_complexity 1 35 0 1389 204 30 35 chr4 32068259 32068656 -170259691 - L1MB1 LINE L1 -1 6167 5773 319 163 88 6 chr4 32068657 32068817 -170259530 + (TA)n Simple_repeat Simple_repeat 2 174 0 190 103 29 44 chr4 32068822 32068890 -170259457 + (TTATA)n Simple_repeat Simple_repeat 3 69 0 22 56 0 0 chr4 32068894 32068930 -170259417 + AT_rich Low_complexity Low_complexity 1 36 0 1950 281 58 28 chr4 32068945 32070784 -170257563 - L1 LINE L1 -3714 3851 2012 189 74 0 0 chr4 32070816 32070843 -170257504 + (TC)n Simple_repeat Simple_repeat 2 28 0 526 346 76 22 chr4 32071061 32071454 -170256893 - L1 LINE L1 -5768 1728 1217 28 29 0 0 chr4 32071517 32071552 -170256795 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr4 32072379 32072407 -170255940 + AT_rich Low_complexity Low_complexity 1 28 0 448 213 14 85 chr4 32072466 32072607 -170255740 + L2 LINE L2 3164 3294 -19 222 320 27 13 chr4 32072636 32072711 -170255636 - L2 LINE L2 -50 3263 3188 219 132 15 59 chr4 32074336 32074404 -170253943 + (TATAA)n Simple_repeat Simple_repeat 1 65 0 3206 65 9 2 chr4 32074415 32074843 -170253504 + L1PA7 LINE L1 5724 6154 0 243 146 0 0 chr4 32074966 32075007 -170253340 + (TG)n Simple_repeat Simple_repeat 1 41 0 222 361 105 38 chr4 32075173 32075411 -170252936 + L2 LINE L2 3018 3271 -1 1660 137 70 0 chr4 32075989 32076104 -170252243 + AluSx SINE Alu 7 112 -200 423 0 0 0 chr4 32076104 32076151 -170252196 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 1660 137 70 0 chr4 32076151 32076320 -170252027 + AluSx SINE Alu 112 311 -1 212 310 53 71 chr4 32076943 32077056 -170251291 + L2 LINE L2 1078 1188 -2126 439 353 148 36 chr4 32077162 32078328 -170250019 + L2 LINE L2 1367 2662 -652 286 385 61 29 chr4 32078343 32078621 -170249726 - MLT1I LTR MaLR -6 403 117 2175 60 14 3 chr4 32079898 32080181 -170248166 - AluY SINE Alu -25 286 1 213 352 0 29 chr4 32080183 32080288 -170248059 - MIR SINE MIR -20 242 141 778 271 106 41 chr4 32080663 32081077 -170247270 + MSTB2 LTR MaLR 17 457 0 26 0 0 0 chr4 32081412 32081438 -170246909 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr4 32081465 32081487 -170246860 + AT_rich Low_complexity Low_complexity 1 22 0 204 298 0 24 chr4 32082131 32082215 -170246132 + T-rich Low_complexity Low_complexity 1 82 0 281 335 85 30 chr4 32082465 32082665 -170245682 - MIR SINE MIR 0 262 52 1618 227 12 9 chr4 32083030 32083369 -170244978 - MER2 DNA MER2_type 0 345 6 345 82 0 0 chr4 32083372 32083421 -170244926 + (TG)n Simple_repeat Simple_repeat 2 50 0 24 0 0 0 chr4 32085364 32085388 -170242959 + AT_rich Low_complexity Low_complexity 1 24 0 57 71 0 0 chr4 32085488 32085601 -170242746 + AT_rich Low_complexity Low_complexity 1 113 0 25 31 0 0 chr4 32085829 32085861 -170242486 + AT_rich Low_complexity Low_complexity 1 32 0 1524 252 20 24 chr4 32085968 32086428 -170241919 + MER89 LTR ERV1 1 557 -2 2672 146 2 7 chr4 32086593 32087039 -170241308 - MLT2A1 LTR ERVL 0 444 1 4694 96 5 11 chr4 32087039 32087696 -170240651 - HERVL-A1 LTR ERVL 0 5654 5002 10187 65 6 0 chr4 32087796 32089068 -170239279 - HERVL-A1 LTR ERVL -684 4970 3691 468 114 71 0 chr4 32089068 32089138 -170239209 - THE1B LTR MaLR -289 75 1 10803 115 13 0 chr4 32089138 32090698 -170237649 - THE1B-int LTR MaLR 0 1580 1 2132 142 19 27 chr4 32090698 32091065 -170237282 - THE1B LTR MaLR 0 364 1 297 242 141 31 chr4 32091084 32091212 -170237135 + L1MCa LINE L1 190 331 -6233 * 585 280 110 79 chr4 32091185 32091539 -170236808 + L1MCa LINE L1 201 565 -5480 1416 240 36 65 chr4 32091650 32092452 -170235895 + L1MCa LINE L1 570 1367 -4852 208 279 15 15 chr4 32093167 32093235 -170235112 + L2 LINE L2 3014 3081 -191 22 35 0 0 chr4 32093395 32093424 -170234923 + AT_rich Low_complexity Low_complexity 1 29 0 206 278 65 56 chr4 32094040 32094148 -170234199 + MIR SINE MIR 122 230 -32 295 293 45 45 chr4 32094341 32094474 -170233873 + MIR SINE MIR 2 134 -128 194 344 16 0 chr4 32094492 32094553 -170233794 + L2 LINE L2 3251 3312 -1 32 0 0 0 chr4 32094726 32094758 -170233589 + AT_rich Low_complexity Low_complexity 1 32 0 2002 126 67 19 chr4 32097129 32097502 -170230845 - L1MA4 LINE L1 -381 5919 5529 27 62 0 0 chr4 32097673 32097721 -170230626 + AT_rich Low_complexity Low_complexity 1 48 0 1137 152 0 0 chr4 32097948 32098126 -170230221 + AluSg/x SINE Alu 134 311 -1 1915 188 38 2 chr4 32098760 32099160 -170229187 + L1MA4A LINE L1 5884 6297 -6 352 309 124 9 chr4 32099614 32099831 -170228516 + MIR SINE MIR 20 261 -1 1045 241 67 19 chr4 32099868 32100183 -170228164 - MER58B DNA MER1_type -8 333 4 410 374 19 7 chr4 32100431 32100586 -170227761 + L2 LINE L2 3116 3272 0 205 244 0 0 chr4 32102589 32102634 -170225713 + (CA)n Simple_repeat Simple_repeat 2 46 0 2146 73 4 0 chr4 32103815 32104111 -170224236 + AluY SINE Alu 9 305 0 2189 84 0 20 chr4 32104977 32105276 -170223071 - AluSc SINE Alu -11 298 6 197 389 43 32 chr4 32105631 32105816 -170222531 + MIR3 SINE MIR 17 203 -5 333 270 112 56 chr4 32106793 32106971 -170221376 - MLT1J LTR MaLR -304 207 20 2344 65 0 3 chr4 32107195 32107485 -170220862 - AluY SINE Alu -22 289 1 601 150 14 7 chr4 32107499 32107646 -170220701 + CT-rich Low_complexity Low_complexity 4 151 0 21 82 0 0 chr4 32109071 32109120 -170219227 + AT_rich Low_complexity Low_complexity 1 49 0 21 57 0 0 chr4 32109223 32109258 -170219089 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr4 32109471 32109493 -170218854 + AT_rich Low_complexity Low_complexity 1 22 0 180 179 0 0 chr4 32109802 32109841 -170218506 + (ATG)n Simple_repeat Simple_repeat 2 40 0 22 0 0 0 chr4 32110171 32110193 -170218154 + AT_rich Low_complexity Low_complexity 1 22 0 242 314 98 0 chr4 32110496 32110598 -170217749 + L2 LINE L2 3160 3271 -1 461 284 36 10 chr4 32110663 32110857 -170217490 - Charlie2 DNA MER1_type 0 2862 2664 2046 90 10 51 chr4 32110950 32111262 -170217085 - AluY SINE Alu -12 299 1 249 301 80 35 chr4 32111267 32111380 -170216967 - L2 LINE L2 0 3313 3196 1003 263 53 56 chr4 32112015 32112566 -170215781 + LTR27 LTR ERV1 7 1231 -139 4439 147 53 19 chr4 32112962 32113762 -170214585 - MER4D LTR ERV1 -20 883 48 3883 152 17 20 chr4 32114160 32114858 -170213489 - MER50 LTR ERV1 -24 710 15 396 0 0 0 chr4 32116083 32116127 -170212220 + (TG)n Simple_repeat Simple_repeat 2 45 0 515 290 70 83 chr4 32116268 32116483 -170211864 - L1ME LINE L1 -5281 789 573 1489 164 3 76 chr4 32116483 32116787 -170211560 - AluJo SINE Alu -26 286 5 515 290 70 83 chr4 32116787 32117099 -170211248 - L1ME LINE L1 -5497 573 269 1375 196 39 4 chr4 32117260 32117540 -170210807 + AluJo SINE Alu 1 290 -22 475 133 12 0 chr4 32118893 32118976 -170209371 + GA-rich Low_complexity Low_complexity 3 86 0 191 149 30 30 chr4 32120829 32120896 -170207451 + (TA)n Simple_repeat Simple_repeat 2 68 0 243 286 22 0 chr4 32121829 32121920 -170206427 + (CATA)n Simple_repeat Simple_repeat 3 95 0 23 33 0 0 chr4 32122050 32122080 -170206267 + AT_rich Low_complexity Low_complexity 1 30 0 180 77 0 0 chr4 32122468 32122494 -170205853 + (CA)n Simple_repeat Simple_repeat 2 27 0 297 0 0 0 chr4 32122531 32122564 -170205783 + (TA)n Simple_repeat Simple_repeat 2 34 0 23 78 0 0 chr4 32122976 32123027 -170205320 + AT_rich Low_complexity Low_complexity 1 51 0 13606 92 28 19 chr4 32123064 32125970 -170202377 - L1PA7 LINE L1 -1 6153 3300 2396 192 70 26 chr4 32126989 32127488 -170200859 + MER44D DNA MER2_type 30 605 0 1909 132 37 0 chr4 32127614 32127910 -170200437 - AluSc SINE Alu -2 307 1 408 254 107 0 chr4 32128421 32128590 -170199757 + MER53 DNA DNA 1 187 -2 633 138 37 9 chr4 32129093 32129202 -170199145 + L1MA3 LINE L1 16 127 -7438 13370 175 36 30 chr4 32129206 32131310 -170197037 + L1MA3 LINE L1 1099 3190 -4534 1069 188 164 40 chr4 32131310 32131608 -170196739 + AluSx SINE Alu 4 332 0 13370 175 36 30 chr4 32131608 32136099 -170192248 + L1MA3 LINE L1 3190 7724 0 22 0 0 0 chr4 32136267 32136289 -170192058 + AT_rich Low_complexity Low_complexity 1 22 0 498 146 0 0 chr4 32136456 32136538 -170191809 - L1PB4 LINE L1 -7 6149 6068 3413 151 31 15 chr4 32136682 32137293 -170191054 - L1MA8 LINE L1 -318 5973 5353 296 58 0 39 chr4 32137293 32137345 -170191002 + (TTTTA)n Simple_repeat Simple_repeat 1 55 0 7280 33 6 1 chr4 32137345 32138219 -170190128 - L1PA3 LINE L1 -19 6132 5254 1738 14 0 9 chr4 32138225 32138440 -170189907 + L1PA3 LINE L1 5014 5226 -920 982 203 31 0 chr4 32138438 32138660 -170189687 - L1MA8 LINE L1 -779 5367 5139 * 875 121 0 0 chr4 32138670 32138802 -170189545 + L1MA8 LINE L1 5842 5973 -318 368 139 13 0 chr4 32138839 32138918 -170189429 + (TA)n Simple_repeat Simple_repeat 2 81 0 1483 200 71 3 chr4 32139248 32139573 -170188774 + MER7A DNA MER2_type 1 345 -1 487 174 0 0 chr4 32139574 32139672 -170188675 + L1 LINE L1 4739 4836 -1310 854 277 21 93 chr4 32139954 32140340 -170188007 - MLT1A1 LTR MaLR -7 358 1 770 269 51 78 chr4 32140343 32141340 -170187007 - L1ME LINE L1 -4594 1667 664 2347 89 0 0 chr4 32141341 32141644 -170186703 - AluY SINE Alu -8 303 1 453 335 72 24 chr4 32141666 32141959 -170186388 + L1ME LINE L1 715 1021 -5049 348 344 52 0 chr4 32142023 32142177 -170186170 - LTR16A LTR ERVL -21 429 268 * 376 346 51 0 chr4 32142174 32142330 -170186017 - LTR16A LTR ERVL -21 429 266 1076 326 69 31 chr4 32142584 32143482 -170184865 - HERV16 LTR ERVL -2731 2265 1267 272 322 64 38 chr4 32143563 32143799 -170184548 - HERV16 LTR ERVL -3836 1160 919 1816 137 0 10 chr4 32143979 32144278 -170184069 + L1PA13 LINE L1 5866 6161 -2 429 325 72 13 chr4 32144347 32144584 -170183763 - HERV16 LTR ERVL -4372 624 374 1665 278 68 46 chr4 32144780 32145965 -170182382 + L1M4 LINE L1 3710 4921 -1225 224 265 128 43 chr4 32146638 32146755 -170181592 + L2 LINE L2 3141 3267 -5 724 88 79 0 chr4 32146894 32147008 -170181339 + AluY SINE Alu 1 123 -188 2387 67 0 3 chr4 32147012 32147324 -170181023 + AluY SINE Alu 1 311 0 24 0 0 0 chr4 32147509 32147533 -170180814 + AT_rich Low_complexity Low_complexity 1 24 0 557 265 20 69 chr4 32147688 32147764 -170180583 - L1ME1 LINE L1 -20 6146 6068 1976 134 7 0 chr4 32147764 32148062 -170180285 + AluSx SINE Alu 1 300 -12 557 265 20 69 chr4 32148062 32148189 -170180158 - L1ME1 LINE L1 -98 6068 5953 1895 165 51 65 chr4 32148589 32149080 -170179267 - MER31A LTR ERV1 -1 484 1 1708 173 0 0 chr4 32149670 32149976 -170178371 - AluJb SINE Alu 0 306 1 402 370 34 0 chr4 32150289 32150408 -170177939 + L2 LINE L2 3149 3271 -1 21 36 0 0 chr4 32150521 32150549 -170177798 + AT_rich Low_complexity Low_complexity 1 28 0 1666 147 14 7 chr4 32151204 32151526 -170176821 + AluSx SINE Alu 1 324 0 361 319 64 36 chr4 32151922 32152173 -170176174 - MER90 LTR ERV1 0 614 357 2225 93 14 0 chr4 32152183 32152474 -170175873 - AluSp SINE Alu -18 295 1 806 181 12 54 chr4 32152475 32152641 -170175706 - THE1C LTR MaLR -216 159 1 1712 170 13 28 chr4 32152642 32152960 -170175387 + MSTB LTR MaLR 114 426 0 369 275 53 30 chr4 32156591 32156722 -170171625 + MIR SINE MIR 90 223 -39 191 281 56 22 chr4 32156957 32157046 -170171301 + MIR SINE MIR 104 195 -67 26 0 0 0 chr4 32157255 32157281 -170171066 + AT_rich Low_complexity Low_complexity 1 26 0 285 344 96 32 chr4 32157373 32157530 -170170817 - MIR3 SINE MIR -17 191 25 28 61 0 0 chr4 32157885 32157934 -170170413 + AT_rich Low_complexity Low_complexity 1 49 0 940 259 44 4 chr4 32158304 32158555 -170169792 - MER110A LTR ERV1 -168 300 40 291 75 0 0 chr4 32159219 32159259 -170169088 - MADE1 DNA Mariner -39 41 2 209 253 92 58 chr4 32159423 32159510 -170168837 - L2 LINE L2 -3 3310 3221 199 372 23 69 chr4 32159584 32159802 -170168545 - L2 LINE L2 -400 2914 2707 1645 169 19 24 chr4 32159832 32160301 -170168046 + L1MA8 LINE L1 5058 5525 -743 548 162 10 20 chr4 32160303 32160402 -170167945 + MER4A LTR ERV1 1 98 -566 1335 209 81 26 chr4 32160402 32160785 -170167562 + MER4A LTR ERV1 261 664 0 12527 117 160 118 chr4 32160788 32161840 -170166507 + MER4A-int LTR ERV1 1 1007 -5591 225 108 0 0 chr4 32161840 32161877 -170166470 + (TG)n Simple_repeat Simple_repeat 2 38 0 12527 117 160 118 chr4 32161877 32164361 -170163986 + MER4A-int LTR ERV1 1007 3686 -2912 * 16251 113 40 17 chr4 32164355 32166289 -170162058 + MER4A-int LTR ERV1 3837 5851 -747 2307 114 0 0 chr4 32166289 32166597 -170161750 - AluSx SINE Alu -4 308 1 16251 113 40 17 chr4 32166597 32167360 -170160987 + MER4A-int LTR ERV1 5851 6595 -3 625 120 0 20 chr4 32167367 32167467 -170160880 + MER4A LTR ERV1 1 98 -566 1620 167 20 22 chr4 32167467 32167813 -170160534 + MER4A LTR ERV1 261 664 0 3130 199 8 7 chr4 32167814 32168431 -170159916 + L1MA8 LINE L1 5527 6144 -147 254 148 37 0 chr4 32168451 32168505 -170159842 + MSTB1 LTR MaLR 55 110 -322 377 125 0 0 chr4 32168510 32168566 -170159781 + L1MB4 LINE L1 6074 6129 -51 2073 240 33 49 chr4 32168640 32169320 -170159027 + L1MD3 LINE L1 6878 7772 -223 2122 184 36 5 chr4 32169320 32169733 -170158614 + MSTB LTR MaLR 1 426 0 2073 240 33 49 chr4 32169733 32169946 -170158401 + L1MD3 LINE L1 7772 7987 -8 1637 108 0 0 chr4 32170914 32171163 -170157184 - L1P3 LINE L1 -5076 1385 1137 701 80 0 0 chr4 32171161 32171249 -170157098 - L1P3 LINE L1 -6048 413 326 * 863 148 0 0 chr4 32171336 32171464 -170156883 + FLAM_C SINE Alu 1 128 -5 338 219 0 0 chr4 32171485 32171558 -170156789 + AluJ/FRAM SINE Alu 228 300 -2 245 146 0 60 chr4 32172205 32172272 -170156075 - MLT2B1 LTR ERVL 0 554 458 210 191 0 0 chr4 32172272 32172314 -170156033 + (CATA)n Simple_repeat Simple_repeat 3 44 0 773 263 110 0 chr4 32172328 32172537 -170155810 - MER46A DNA MER2_type -3 233 2 2083 212 58 7 chr4 32172538 32172986 -170155361 - MLT2B1 LTR ERVL -45 475 5 28 0 0 0 chr4 32173343 32173371 -170154976 + AT_rich Low_complexity Low_complexity 1 28 0 262 211 0 0 chr4 32173455 32173512 -170154835 + L1MA4 LINE L1 6203 6259 -41 240 347 113 8 chr4 32173545 32173669 -170154678 - MIR SINE MIR -112 150 14 345 74 19 0 chr4 32173773 32173827 -170154520 - L1PB2 LINE L1 -2 6149 6095 3701 164 21 46 chr4 32173927 32174548 -170153799 - L1PB2 LINE L1 -219 5932 5350 15827 32 4 0 chr4 32174548 32177239 -170151108 - L1PA4 LINE L1 -1 6154 3458 3701 164 21 46 chr4 32177239 32177773 -170150574 - L1PB2 LINE L1 -801 5350 4804 887 226 65 4 chr4 32177892 32178140 -170150207 + L1P LINE L1 4871 5133 -1013 1443 139 37 8 chr4 32178140 32178385 -170149962 + L1PA15 LINE L1 5912 6163 -2 1397 269 91 38 chr4 32178385 32179380 -170148967 + L1MEc LINE L1 734 1780 -4616 26 30 0 0 chr4 32180178 32180211 -170148136 + AT_rich Low_complexity Low_complexity 1 33 0 3287 111 59 18 chr4 32180553 32181128 -170147219 + MER51C LTR ERV1 1 640 0 22 0 0 0 chr4 32181399 32181421 -170146926 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr4 32182086 32182109 -170146238 + AT_rich Low_complexity Low_complexity 1 23 0 2291 64 0 10 chr4 32182466 32182761 -170145586 + AluY SINE Alu 1 292 -19 595 287 44 40 chr4 32183067 32183318 -170145029 - MIR SINE MIR -4 258 7 195 129 0 0 chr4 32183496 32183527 -170144820 + (CATATA)n Simple_repeat Simple_repeat 5 35 0 33 0 0 0 chr4 32183896 32183929 -170144418 + AT_rich Low_complexity Low_complexity 1 33 0 350 21 21 0 chr4 32184241 32184288 -170144059 + (CA)n Simple_repeat Simple_repeat 2 49 0 1606 233 125 25 chr4 32184473 32184904 -170143443 + MLT2B1 LTR ERVL 1 484 -36 207 0 0 0 chr4 32184904 32184927 -170143420 + (TA)n Simple_repeat Simple_repeat 2 24 0 1606 233 125 25 chr4 32184927 32184968 -170143379 + MLT2B1 LTR ERVL 484 520 0 23 33 0 0 chr4 32185517 32185547 -170142800 + AT_rich Low_complexity Low_complexity 1 30 0 2056 136 0 0 chr4 32186297 32186605 -170141742 + AluSg SINE Alu 1 308 -2 309 26 0 0 chr4 32188092 32188130 -170140217 + (CA)n Simple_repeat Simple_repeat 1 38 0 25 75 0 0 chr4 32188314 32188367 -170139980 + AT_rich Low_complexity Low_complexity 1 53 0 1389 51 0 61 chr4 32188448 32188645 -170139702 + AluY SINE Alu 98 322 0 270 50 0 25 chr4 32188645 32188685 -170139662 + (TAAA)n Simple_repeat Simple_repeat 2 72 0 256 298 12 48 chr4 32188775 32188859 -170139488 + L2 LINE L2 3184 3264 -8 22 35 0 0 chr4 32188954 32188983 -170139364 + AT_rich Low_complexity Low_complexity 1 29 0 1997 125 0 7 chr4 32189786 32190082 -170138265 - AluSx SINE Alu -16 296 3 7415 34 3 0 chr4 32190341 32191711 -170136636 - L1PA4 LINE L1 0 6155 4783 228 188 0 167 chr4 32191847 32191943 -170136404 - MADE1 DNA Mariner 0 80 1 1055 130 4 141 chr4 32192062 32192331 -170136016 - L1MA10 LINE L1 0 6334 6103 3014 160 18 7 chr4 32192468 32193019 -170135328 + L1 LINE L1 3903 4459 -1687 266 179 107 0 chr4 32193497 32193553 -170134794 - MIR SINE MIR -12 250 189 29348 116 11 85 chr4 32194938 32197773 -170130574 + L1PA7 LINE L1 13 3057 -3097 230 0 33 0 chr4 32197773 32197803 -170130544 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 29348 116 11 85 chr4 32197803 32201619 -170126728 + L1PA7 LINE L1 3057 6154 0 30 27 0 0 chr4 32202672 32202709 -170125638 + AT_rich Low_complexity Low_complexity 1 37 0 2292 204 60 49 chr4 32202763 32203391 -170124956 - MER92B LTR ERV1 0 636 2 283 276 29 9 chr4 32203965 32204070 -170124277 - LTR33 LTR ERVL 0 521 415 451 280 110 16 chr4 32204207 32204389 -170123958 - LTR33 LTR ERVL -311 210 12 1967 151 3 3 chr4 32204526 32204831 -170123516 - AluSx SINE Alu -2 310 6 22 0 0 0 chr4 32205652 32205674 -170122673 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr4 32205958 32205988 -170122359 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr4 32206131 32206159 -170122188 + AT_rich Low_complexity Low_complexity 1 28 0 520 417 21 3 chr4 32208640 32208966 -170119381 + L2 LINE L2 2465 2796 -518 1121 43 0 0 chr4 32208967 32209106 -170119241 + L1PA6 LINE L1 6016 6154 0 23 0 0 0 chr4 32209427 32209450 -170118897 + AT_rich Low_complexity Low_complexity 1 23 0 228 331 30 30 chr4 32209505 32209638 -170118709 + L2 LINE L2 3139 3271 -42 1162 257 42 86 chr4 32209642 32209688 -170118659 - MLT2B1 LTR ERVL 0 520 474 279 0 0 0 chr4 32209688 32209719 -170118628 + (CA)n Simple_repeat Simple_repeat 2 32 0 1162 257 42 86 chr4 32209719 32210216 -170118131 - MLT2B1 LTR ERVL -46 474 1 273 307 22 22 chr4 32210253 32210390 -170117957 - MIR SINE MIR -35 227 91 290 294 124 73 chr4 32211469 32211840 -170116507 + MLT1H LTR MaLR 147 536 -13 180 152 0 0 chr4 32211959 32211992 -170116355 + T-rich Low_complexity Low_complexity 1 33 0 33 0 0 0 chr4 32212302 32212335 -170116012 + AT_rich Low_complexity Low_complexity 1 33 0 5792 217 23 6 chr4 32212631 32214049 -170114298 - L1 LINE L1 -1917 4229 2789 2493 67 0 3 chr4 32214460 32214772 -170113575 + AluY SINE Alu 1 311 0 186 259 52 17 chr4 32215141 32215199 -170113148 + L2 LINE L2 2120 2179 -1135 27 29 0 0 chr4 32218203 32218237 -170110110 + AT_rich Low_complexity Low_complexity 1 34 0 1749 318 65 32 chr4 32218296 32219290 -170109057 + L2 LINE L2 1704 2730 -584 766 212 0 24 chr4 32219309 32219474 -170108873 - FRAM SINE Alu -12 164 4 549 342 76 16 chr4 32219479 32219966 -170108381 + L2 LINE L2 2746 3258 -55 22 35 0 0 chr4 32221714 32221743 -170106604 + AT_rich Low_complexity Low_complexity 1 29 0 1477 239 43 27 chr4 32222104 32222548 -170105799 + MLT1D LTR MaLR 53 503 -2 2036 115 0 38 chr4 32222987 32223300 -170105047 + AluSx SINE Alu 1 301 -11 191 333 81 11 chr4 32223313 32223400 -170104947 - L2 LINE L2 -21 3251 3159 1930 39 0 9 chr4 32223953 32224229 -170104118 + AluY SINE Alu 55 328 0 194 394 41 12 chr4 32224392 32224562 -170103785 + MIR SINE MIR 83 257 -5 1046 159 5 10 chr4 32224929 32225124 -170103223 - L1 LINE L1 -2337 3809 3616 3525 117 2 2 chr4 32225125 32225677 -170102670 + L1PB1 LINE L1 5231 5782 -369 236 254 14 14 chr4 32225685 32225756 -170102591 + (TA)n Simple_repeat Simple_repeat 2 72 0 1927 151 5 42 chr4 32225758 32226141 -170102206 + L1PB1 LINE L1 5783 6151 0 3027 159 139 0 chr4 32226282 32226880 -170101467 - Tigger1 DNA MER2_type -1 2417 1737 323 125 0 0 chr4 32226884 32226932 -170101415 - Alu SINE Alu -11 289 242 39 74 0 0 chr4 32227441 32227522 -170100825 + AT_rich Low_complexity Low_complexity 1 81 0 669 109 6 170 chr4 32227830 32227995 -170100352 - MER20 DNA MER1_type -81 138 1 242 235 17 113 chr4 32228268 32228383 -170099964 + L1ME4a LINE L1 5491 5594 -527 343 261 29 29 chr4 32228440 32228578 -170099769 + L1ME4a LINE L1 5797 5934 -187 252 0 0 0 chr4 32228671 32228699 -170099648 + (TC)n Simple_repeat Simple_repeat 1 28 0 216 184 0 0 chr4 32229037 32229075 -170099272 + (TG)n Simple_repeat Simple_repeat 1 38 0 208 278 250 0 chr4 32229353 32229425 -170098922 + MIR SINE MIR 152 241 -21 1906 125 18 0 chr4 32230991 32231271 -170097076 + AluSx SINE Alu 1 285 -27 25 31 0 0 chr4 32231271 32231303 -170097044 + AT_rich Low_complexity Low_complexity 1 32 0 2081 113 0 7 chr4 32231578 32231869 -170096478 - AluSc SINE Alu -20 289 1 22 0 0 0 chr4 32234150 32234172 -170094175 + AT_rich Low_complexity Low_complexity 1 22 0 4435 195 40 33 chr4 32235353 32235817 -170092530 + L1MC3 LINE L1 6745 7204 -581 2571 110 3 3 chr4 32235817 32236181 -170092166 + THE1B LTR MaLR 1 364 0 4435 195 40 33 chr4 32236181 32236750 -170091597 + L1MC3 LINE L1 7204 7785 0 1103 280 26 67 chr4 32236880 32237345 -170091002 + LTR40b LTR ERVL 3 448 -14 2371 50 0 3 chr4 32237460 32237771 -170090576 - AluY SINE Alu 0 310 1 1093 218 5 41 chr4 32238132 32238409 -170089938 + MLT1D LTR MaLR 250 505 0 384 367 88 29 chr4 32238614 32238955 -170089392 - MER45C DNA AcHobo -52 901 541 298 253 63 70 chr4 32239028 32239186 -170089161 - LTR16A1 LTR ERVL -300 157 1 848 234 0 0 chr4 32239322 32239493 -170088854 + FAM SINE Alu 1 171 -4 296 305 0 0 chr4 32240646 32240723 -170087624 + MIR SINE MIR 42 118 -90 306 356 0 0 chr4 32240819 32240934 -170087413 + MIR SINE MIR 105 219 -43 2245 200 12 2 chr4 32240977 32241397 -170086950 + MSTB LTR MaLR 3 426 0 869 237 20 0 chr4 32241430 32241628 -170086719 - MLT1D LTR MaLR -297 208 7 32 26 0 0 chr4 32241921 32241960 -170086387 + AT_rich Low_complexity Low_complexity 1 39 0 196 276 23 69 chr4 32242839 32242926 -170085421 + L2 LINE L2 3229 3311 -2 212 233 62 108 chr4 32243223 32243352 -170084995 - MIR SINE MIR -14 248 126 2532 108 8 11 chr4 32243557 32243928 -170084419 - THE1C LTR MaLR -5 370 1 26 30 0 0 chr4 32244109 32244142 -170084205 + AT_rich Low_complexity Low_complexity 1 33 0 1753 49 0 0 chr4 32244427 32244652 -170083695 + L1PA4 LINE L1 5928 6152 -3 563 223 128 7 chr4 32244676 32244824 -170083523 - FRAM SINE Alu 0 166 1 1780 240 46 26 chr4 32246234 32246738 -170081609 + MER63 DNA MER1_type 546 1059 -1 1273 301 113 36 chr4 32246903 32247534 -170080813 + L1MEc LINE L1 41 719 -5677 * 2294 204 46 18 chr4 32247529 32248098 -170080249 + L1P LINE L1 4196 4780 -1366 2285 107 31 0 chr4 32248098 32248425 -170079922 - LTR12 LTR ERV1 -1 713 377 246 309 10 0 chr4 32248425 32248522 -170079825 - LTR30 LTR ERV1 -79 643 546 879 114 7 0 chr4 32248522 32248662 -170079685 - LTR12 LTR ERV1 -432 282 142 1273 91 0 11 chr4 32348677 32348852 -169979495 - AluY SINE Alu -138 173 1 247 333 27 0 chr4 32349056 32349167 -169979180 + MLT1G1 LTR MaLR 3 116 -479 * 316 340 51 61 chr4 32349143 32349596 -169978751 + MLT1H1 LTR MaLR 49 575 -20 854 189 11 49 chr4 32350175 32350360 -169977987 - MLT1B LTR MaLR -2 388 211 794 240 156 31 chr4 32350360 32350681 -169977666 - MER93b LTR ERV1 0 373 13 933 167 0 29 chr4 32350711 32350885 -169977462 - MLT1B LTR MaLR -220 170 2 895 269 107 24 chr4 32352299 32352685 -169975662 - MER93a LTR ERV1 -2 401 1 248 419 9 0 chr4 32352831 32352936 -169975411 - L2 LINE L2 -42 3230 3125 369 0 0 0 chr4 32352939 32352980 -169975367 + (TA)n Simple_repeat Simple_repeat 2 42 0 211 136 45 23 chr4 32353577 32353621 -169974726 - MIR SINE MIR -101 161 117 29 0 0 0 chr4 32355394 32355423 -169972924 + AT_rich Low_complexity Low_complexity 1 29 0 1809 109 97 31 chr4 32355535 32355884 -169972463 - THE1C LTR MaLR -3 372 1 9245 143 45 8 chr4 32355884 32357408 -169970939 - THE1C-int LTR MaLR 0 1580 1 1548 178 62 51 chr4 32357408 32357779 -169970568 - THE1C LTR MaLR 0 375 1 605 283 90 9 chr4 32358687 32358910 -169969437 - MIR SINE MIR -10 252 12 399 226 68 15 chr4 32359019 32359152 -169969195 - L1ME3 LINE L1 -7 6155 6016 965 183 41 5 chr4 32359231 32359428 -169968919 - L1MC2 LINE L1 -44 6300 6097 1223 257 15 3 chr4 32359440 32359775 -169968572 - L1M4 LINE L1 -1293 4853 4515 * 1750 269 77 23 chr4 32359771 32360655 -169967692 - L1M4 LINE L1 -2477 3669 2738 2166 230 55 10 chr4 32360764 32361489 -169966858 - L1M4 LINE L1 -2947 3199 2442 735 202 71 15 chr4 32361499 32361796 -169966551 + L1MCa LINE L1 1505 1908 -4518 1007 219 63 19 chr4 32361804 32362213 -169966134 + L1MCa LINE L1 2137 2602 -3947 5696 151 31 10 chr4 32362216 32363788 -169964559 + L1MA3 LINE L1 4693 6296 -9 544 257 0 0 chr4 32363796 32363944 -169964403 + L1MCa LINE L1 2553 2700 -3726 261 308 0 0 chr4 32363952 32364017 -169964330 + MLT1E3 LTR MaLR 99 163 -430 2062 160 21 19 chr4 32364090 32364464 -169963883 - THE1C LTR MaLR 0 375 1 1354 217 20 43 chr4 32364464 32364814 -169963533 - MLT1A1 LTR MaLR -16 349 8 1064 268 73 46 chr4 32364813 32365183 -169963164 + MLT1E3 LTR MaLR 214 624 0 * 868 309 27 0 chr4 32365185 32365486 -169962861 - L1ME LINE L1 -431 5739 5431 2326 92 0 0 chr4 32365672 32365966 -169962381 + AluSc SINE Alu 1 294 -15 407 179 0 0 chr4 32365981 32366059 -169962288 + T-rich Low_complexity Low_complexity 1 78 0 569 265 167 19 chr4 32367125 32367176 -169961171 - MIR SINE MIR -5 257 215 315 0 0 0 chr4 32367176 32367211 -169961136 + (TG)n Simple_repeat Simple_repeat 2 36 0 569 265 167 19 chr4 32367211 32367374 -169960973 - MIR SINE MIR -47 215 11 308 268 12 0 chr4 32367835 32367917 -169960430 + MLT1H LTR MaLR 128 210 -339 1957 138 52 3 chr4 32369625 32369951 -169958396 + MER61A LTR ERV1 2 343 0 429 20 0 0 chr4 32370089 32370139 -169958208 + (TGGA)n Simple_repeat Simple_repeat 1 50 0 2154 115 0 0 chr4 32370874 32371169 -169957178 + AluSq SINE Alu 1 295 -18 419 312 193 32 chr4 32371230 32371634 -169956713 - LTR33 LTR ERVL -52 469 1 448 342 86 17 chr4 32372480 32372714 -169955633 + MIR SINE MIR 2 251 -11 495 275 72 10 chr4 32372951 32373158 -169955189 - L1ME1 LINE L1 -15 6151 5932 2221 111 7 0 chr4 32373176 32373482 -169954865 - AluSc SINE Alu -1 308 1 2484 58 0 0 chr4 32373484 32373792 -169954555 - AluY SINE Alu -3 308 1 21 0 0 0 chr4 32374332 32374353 -169953994 + AT_rich Low_complexity Low_complexity 1 21 0 373 259 77 56 chr4 32375504 32375790 -169952557 - L1MC5 LINE L1 -49 7912 7621 192 125 0 0 chr4 32377172 32377204 -169951143 + (CA)n Simple_repeat Simple_repeat 2 33 0 22 35 0 0 chr4 32378046 32378075 -169950272 + AT_rich Low_complexity Low_complexity 1 29 0 333 229 43 0 chr4 32378099 32378169 -169950178 + MER94 DNA DNA 1 73 -61 788 321 67 19 chr4 32378419 32378780 -169949567 - L2 LINE L2 0 3313 2936 886 293 147 90 chr4 32378799 32379566 -169948781 - L2 LINE L2 -1214 2100 1254 212 0 36 0 chr4 32379566 32379594 -169948753 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 886 293 147 90 chr4 32379594 32379886 -169948461 - L2 LINE L2 -2060 1254 980 427 302 98 71 chr4 32380239 32380649 -169947698 + L3 LINE CR1 912 1332 -245 490 196 0 165 chr4 32380683 32380841 -169947506 - L2 LINE L2 0 3313 3182 309 325 48 22 chr4 32381495 32381726 -169946621 + L1ME LINE L1 5609 5845 -325 24 77 0 0 chr4 32381879 32381931 -169946416 + AT_rich Low_complexity Low_complexity 1 52 0 30 93 0 0 chr4 32381974 32382060 -169946287 + AT_rich Low_complexity Low_complexity 1 86 0 258 311 33 11 chr4 32382079 32382177 -169946170 + MER5B DNA MER1_type 88 177 -1 233 365 101 57 chr4 32382179 32382615 -169945732 - L2 LINE L2 -587 2727 2273 309 82 0 0 chr4 32383024 32383073 -169945274 + (TG)n Simple_repeat Simple_repeat 2 50 0 1235 248 111 14 chr4 32383151 32383521 -169944826 + MLT2B1 LTR ERVL 1 420 -100 1948 134 10 3 chr4 32383521 32383826 -169944521 - AluSq SINE Alu -6 307 1 1235 248 111 14 chr4 32383826 32383887 -169944460 + MLT2B1 LTR ERVL 420 474 -46 228 167 21 0 chr4 32383891 32383939 -169944408 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 13122 155 42 16 chr4 32384253 32384371 -169943976 - Tigger1 DNA MER2_type -1 2417 2303 2303 76 0 10 chr4 32384371 32384672 -169943675 + AluY SINE Alu 1 298 -13 13122 155 42 16 chr4 32384672 32386910 -169941437 - Tigger1 DNA MER2_type -115 2303 1 1954 142 0 13 chr4 32387279 32387595 -169940752 - AluSx SINE Alu 0 312 1 3179 236 36 4 chr4 32387912 32388693 -169939654 - L1PA15-16 LINE L1 -4103 2746 1941 5545 131 9 29 chr4 32388710 32389724 -169938623 + L1PA15 LINE L1 5168 6160 -5 338 339 47 0 chr4 32390331 32390458 -169937889 + MLT1I LTR MaLR 80 212 -197 37 0 0 0 chr4 32390652 32390689 -169937658 + AT_rich Low_complexity Low_complexity 1 37 0 24 67 0 0 chr4 32390732 32390777 -169937570 + AT_rich Low_complexity Low_complexity 1 45 0 4140 123 126 120 chr4 32391070 32392466 -169935881 + pTR5 LTR ERV1 741 2438 0 535 214 0 13 chr4 32392841 32392995 -169935352 + GA-rich Low_complexity Low_complexity 2 153 0 243 0 0 0 chr4 32393393 32393420 -169934927 + (TA)n Simple_repeat Simple_repeat 2 28 0 21 36 0 0 chr4 32393984 32394012 -169934335 + AT_rich Low_complexity Low_complexity 1 28 0 2199 130 0 0 chr4 32394106 32394407 -169933940 + AluSq SINE Alu 1 301 -12 553 181 114 7 chr4 32394462 32394611 -169933736 + MER113 DNA MER1_type? 222 386 -135 24 53 0 0 chr4 32394875 32394913 -169933434 + AT_rich Low_complexity Low_complexity 1 38 0 24 0 0 0 chr4 32395218 32395242 -169933105 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr4 32397208 32397232 -169931115 + AT_rich Low_complexity Low_complexity 1 24 0 2664 124 29 7 chr4 32397635 32398054 -169930293 + MSTA LTR MaLR 1 428 0 485 320 0 8 chr4 32398104 32398232 -169930115 + LTR33 LTR ERVL 33 159 -362 286 280 0 32 chr4 32399414 32399514 -169928833 + MIR SINE MIR 80 173 -35 336 24 0 0 chr4 32399802 32399843 -169928504 + (TG)n Simple_repeat Simple_repeat 2 42 0 204 102 61 0 chr4 32400151 32400200 -169928147 + (TA)n Simple_repeat Simple_repeat 1 52 0 186 43 0 0 chr4 32400690 32400713 -169927634 + (A)n Simple_repeat Simple_repeat 1 23 0 21 0 0 0 chr4 32400951 32400972 -169927375 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr4 32401469 32401497 -169926850 + AT_rich Low_complexity Low_complexity 1 28 0 222 325 229 0 chr4 32401556 32401722 -169926625 - MIR SINE MIR -19 243 40 2125 104 35 0 chr4 32401850 32402139 -169926208 - AluSp SINE Alu -14 299 1 411 303 111 33 chr4 32402590 32402677 -169925670 - L1ME3 LINE L1 -278 5884 5805 601 312 18 5 chr4 32402677 32402898 -169925449 - MER58A DNA MER1_type 0 224 1 411 303 111 33 chr4 32402898 32403199 -169925148 - L1ME3 LINE L1 -357 5805 5466 33 43 0 0 chr4 32403268 32403315 -169925032 + AT_rich Low_complexity Low_complexity 1 47 0 253 206 198 24 chr4 32403345 32403471 -169924876 - L1ME3 LINE L1 -813 5333 5186 495 301 77 30 chr4 32403608 32404056 -169924291 - L1ME3 LINE L1 -1131 5015 4543 568 309 108 35 chr4 32404345 32405394 -169922953 - L1ME3 LINE L1 -1995 4151 3027 1640 190 44 33 chr4 32405729 32406092 -169922255 + MLT1A2 LTR MaLR 8 374 0 2138 127 3 0 chr4 32406894 32407186 -169921161 - AluSq SINE Alu -20 293 1 186 43 0 0 chr4 32407189 32407212 -169921135 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1777 208 21 8 chr4 32408371 32408756 -169919591 + MLT1B LTR MaLR 1 390 0 328 298 49 94 chr4 32408879 32409144 -169919203 - L3 LINE CR1 -112 1465 1213 194 146 0 24 chr4 32409629 32409670 -169918677 + (TTTC)n Simple_repeat Simple_repeat 1 40 0 1222 223 0 16 chr4 32409701 32409948 -169918399 - AluJo SINE Alu -28 284 42 239 351 78 20 chr4 32409954 32410199 -169918148 - L3 LINE CR1 -683 894 636 813 122 0 0 chr4 32410201 32410324 -169918023 + AluSp/q SINE Alu 188 310 -3 2083 111 30 3 chr4 32411692 32411990 -169916357 - AluSx SINE Alu -6 306 1 506 315 8 0 chr4 32412038 32412168 -169916179 - L2 LINE L2 -1 3271 3141 1156 328 118 8 chr4 32412465 32413102 -169915245 - L2 LINE L2 -343 2971 2265 2504 58 0 7 chr4 32413155 32413463 -169914884 + AluY SINE Alu 1 306 -5 656 268 53 11 chr4 32413784 32414068 -169914279 - L1ME LINE L1 -587 5575 5280 1217 227 11 15 chr4 32414100 32414360 -169913987 - MLT1A1 LTR MaLR -100 265 7 2262 106 6 0 chr4 32414535 32414846 -169913501 + AluSp SINE Alu 1 313 0 776 107 30 77 chr4 32414850 32415018 -169913329 + L1MA9 LINE L1 5276 5435 -733 801 157 0 0 chr4 32415022 32415143 -169913204 + FLAM_C SINE Alu 1 121 -22 183 80 0 0 chr4 32415143 32415168 -169913179 + (CAA)n Simple_repeat Simple_repeat 2 26 0 501 157 10 59 chr4 32415185 32415287 -169913060 + FLAM_C SINE Alu 37 133 -10 3036 183 108 32 chr4 32415288 32416069 -169912278 + L1MA9 LINE L1 5433 6272 -40 2729 141 53 9 chr4 32416121 32416576 -169911771 + MER4E LTR ERV1 1 475 -304 1638 71 26 9 chr4 32416607 32416833 -169911514 + MER4E LTR ERV1 537 766 0 227 281 135 0 chr4 32416942 32417031 -169911316 - MIR SINE MIR -103 159 59 1443 71 115 2 chr4 32417400 32417738 -169910609 + LTR7 LTR ERV1 1 448 -2 399 308 36 18 chr4 32417804 32418028 -169910319 + L2 LINE L2 1468 1695 -1619 1090 246 69 81 chr4 32418073 32418418 -169909929 - MLT1D LTR MaLR -2 503 162 2546 83 128 2 chr4 32418418 32418816 -169909531 + LTR7 LTR ERV1 1 448 -2 1090 246 69 81 chr4 32418816 32418888 -169909459 - MLT1D LTR MaLR -343 162 91 439 356 63 3 chr4 32418925 32419154 -169909193 + L2 LINE L2 2915 3166 -147 2159 112 10 0 chr4 32419154 32419449 -169908898 - AluY SINE Alu -13 298 1 439 356 63 3 chr4 32419449 32419503 -169908844 + L2 LINE L2 3166 3215 -98 3242 151 34 105 chr4 32420731 32421703 -169906644 - MER52C LTR ERV1 -2 1276 403 2659 267 20 8 chr4 32421703 32422578 -169905769 + L1PA15-16 LINE L1 2904 3789 -3060 751 241 60 53 chr4 32423178 32423575 -169904772 - MLT1A1 LTR MaLR -15 381 1 27 0 0 0 chr4 32424350 32424377 -169903970 + AT_rich Low_complexity Low_complexity 1 27 0 422 264 31 8 chr4 32424410 32424539 -169903808 - MER94 DNA DNA -1 133 2 2266 91 0 0 chr4 32425843 32426129 -169902218 - AluSx SINE Alu -26 286 1 2267 71 47 14 chr4 32426215 32426512 -169901835 - AluY SINE Alu -2 309 3 230 402 10 10 chr4 32426672 32426774 -169901573 + MIR SINE MIR 33 134 -74 34 24 0 0 chr4 32426840 32426881 -169901466 + AT_rich Low_complexity Low_complexity 1 41 0 2010 127 0 29 chr4 32427223 32427531 -169900816 + AluSg SINE Alu 1 299 -11 748 319 26 63 chr4 32427940 32428291 -169900056 + MLT1H LTR MaLR 13 350 -199 21 36 0 0 chr4 32429652 32429680 -169898667 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr4 32429795 32429824 -169898523 + AT_rich Low_complexity Low_complexity 1 29 0 207 0 0 0 chr4 32430311 32430334 -169898013 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1452 197 3 28 chr4 32430789 32431078 -169897269 + AluJb SINE Alu 5 286 -26 300 224 0 0 chr4 32431088 32431186 -169897161 + (TA)n Simple_repeat Simple_repeat 2 99 0 359 324 99 32 chr4 32431988 32432241 -169896106 - MLT1I LTR MaLR -6 403 134 230 299 0 13 chr4 32432900 32432977 -169895370 - MER67B LTR ERV1 -540 121 46 216 323 8 46 chr4 32433291 32433421 -169894926 - L2 LINE L2 -811 2503 2379 610 224 88 44 chr4 32433602 32433852 -169894495 + LTR33A LTR ERVL 263 523 0 2158 97 0 39 chr4 32434196 32434504 -169893843 + AluSp SINE Alu 1 296 -17 376 298 43 25 chr4 32434618 32434779 -169893568 - MIR3 SINE MIR -2 206 43 2092 151 83 8 chr4 32435143 32435541 -169892806 - MSTA LTR MaLR 0 428 1 2055 123 0 32 chr4 32435832 32436142 -169892205 - AluSp SINE Alu -13 300 1 282 379 25 68 chr4 32436146 32436468 -169891879 + L2 LINE L2 2965 3272 0 328 133 24 0 chr4 32437037 32437120 -169891227 + (TA)n Simple_repeat Simple_repeat 1 85 0 212 143 18 71 chr4 32437140 32437196 -169891151 + CT-rich Low_complexity Low_complexity 2 54 0 1720 149 67 69 chr4 32439645 32440021 -169888326 - THE1C LTR MaLR 0 375 1 226 284 14 27 chr4 32440149 32440223 -169888124 + L2 LINE L2 3230 3302 -11 214 317 30 0 chr4 32441044 32441145 -169887202 + (CATA)n Simple_repeat Simple_repeat 1 104 0 22 0 0 0 chr4 32442422 32442444 -169885903 + AT_rich Low_complexity Low_complexity 1 22 0 952 308 26 4 chr4 32442582 32442848 -169885499 + MLT2E LTR ERVL 25 296 -332 463 283 24 6 chr4 32442922 32443088 -169885259 + MLT2E LTR ERVL 452 620 -8 23 68 0 0 chr4 32443114 32443158 -169885189 + AT_rich Low_complexity Low_complexity 1 44 0 271 303 48 101 chr4 32443471 32443887 -169884460 - MLT1I LTR MaLR -7 402 9 333 264 14 89 chr4 32443922 32444090 -169884257 + MIR SINE MIR 64 220 -42 374 310 26 0 chr4 32444194 32444307 -169884040 - MIR3 SINE MIR -6 202 87 288 77 0 0 chr4 32445221 32445260 -169883087 + (TG)n Simple_repeat Simple_repeat 2 40 0 2178 208 13 23 chr4 32446258 32446479 -169881868 - MLT1C LTR MaLR 0 467 245 1989 138 128 10 chr4 32446479 32446862 -169881485 - MSTA LTR MaLR 0 428 1 2178 208 13 23 chr4 32446862 32447112 -169881235 - MLT1C LTR MaLR -222 245 1 1336 166 154 37 chr4 32447411 32447736 -169880611 + MLT1A1 LTR MaLR 3 365 0 363 323 31 12 chr4 32447841 32448025 -169880322 + MIR3 SINE MIR 4 189 -66 186 43 0 0 chr4 32448836 32448859 -169879488 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1709 84 121 4 chr4 32448863 32449112 -169879235 - AluSc SINE Alu -31 278 1 225 336 47 28 chr4 32450222 32450329 -169878018 + MLT1J LTR MaLR 109 217 -294 591 150 167 146 chr4 32450342 32450588 -169877759 - LTR54B LTR ERV1 -259 251 1 3115 211 24 21 chr4 32450588 32451260 -169877087 - MER57A-int LTR ERV1 -395 7142 6469 1846 108 0 0 chr4 32451264 32451505 -169876842 + AluSc SINE Alu 1 241 -68 1002 54 27 0 chr4 32451520 32451669 -169876678 + (GAAA)n Simple_repeat Simple_repeat 2 154 0 4309 207 20 23 chr4 32451680 32452697 -169875650 - MER57A-int LTR ERV1 -1947 5590 2650 1392 169 38 89 chr4 32452706 32453461 -169874886 - MER57A-int LTR ERV1 -2280 4498 1925 30 109 0 0 chr4 32453473 32453601 -169874746 + AT_rich Low_complexity Low_complexity 1 128 0 437 231 19 0 chr4 32453723 32453827 -169874520 - MER57A-int LTR ERV1 -2878 3453 3348 380 70 0 18 chr4 32453882 32453939 -169874408 - AluS SINE Alu -226 77 22 864 155 34 63 chr4 32453967 32454174 -169874173 - MER57A-int LTR ERV1 -3043 3288 3088 305 191 0 0 chr4 32454278 32454346 -169874001 - MER57A-int LTR ERV1 -3684 1187 1120 455 239 148 68 chr4 32454381 32454645 -169873702 - MER34C LTR ERV1 -144 441 157 275 253 0 27 chr4 32454696 32454771 -169873576 - MER57A-int LTR ERV1 -3683 2648 2576 2517 42 0 0 chr4 32455259 32455569 -169872778 - AluY SINE Alu -1 310 1 221 241 36 43 chr4 32455739 32455836 -169872511 + MIR SINE MIR 16 113 -95 3498 211 9 55 chr4 32455909 32456765 -169871582 - MER57A-int LTR ERV1 -6712 825 9 1731 160 98 3 chr4 32456773 32457141 -169871206 - MER57A LTR ERV1 0 403 1 2066 109 26 7 chr4 32457975 32458278 -169870069 - AluSx SINE Alu 0 312 4 21 0 0 0 chr4 32458497 32458518 -169869829 + AT_rich Low_complexity Low_complexity 1 21 0 260 27 27 0 chr4 32458550 32458587 -169869760 + (TA)n Simple_repeat Simple_repeat 1 38 0 3160 203 29 30 chr4 32458676 32459435 -169868912 + L1MB7 LINE L1 5415 6172 -12 22 35 0 0 chr4 32459600 32459629 -169868718 + AT_rich Low_complexity Low_complexity 1 29 0 590 156 0 45 chr4 32461378 32461532 -169866815 + CT-rich Low_complexity Low_complexity 4 150 0 300 328 175 26 chr4 32463687 32463995 -169864352 + L2 LINE L2 2224 2577 -737 197 343 120 0 chr4 32464309 32464417 -169863930 + L2 LINE L2 3143 3263 -9 209 345 78 17 chr4 32464495 32464611 -169863736 + L2 LINE L2 3191 3313 0 885 135 0 0 chr4 32465458 32465584 -169862763 + FLAM_C SINE Alu 1 126 -17 8453 226 66 38 chr4 32466173 32466454 -169861893 - L1MA7 LINE L1 -6 7704 7432 2003 132 0 22 chr4 32466454 32466470 -169861877 - AluSx SINE Alu -8 304 289 801 31 0 0 chr4 32466470 32466566 -169861781 + (TTCTC)n Simple_repeat Simple_repeat 2 97 0 2003 132 0 22 chr4 32466566 32466860 -169861487 - AluSx SINE Alu -23 289 1 8453 226 66 38 chr4 32466860 32467897 -169860450 - L1MA7 LINE L1 -278 7432 6425 1926 132 7 0 chr4 32467897 32468170 -169860177 - AluSp SINE Alu -23 290 16 8453 226 66 38 chr4 32468170 32470785 -169857562 - L1MA7 LINE L1 -1285 6425 3634 685 255 48 13 chr4 32470814 32471045 -169857302 - L1MA7 LINE L1 -4486 3079 2841 890 291 5 0 chr4 32471051 32471274 -169857073 + Tigger7 DNA MER2_type 1 224 -481 452 260 29 10 chr4 32471285 32471389 -169856958 + Tigger7 DNA MER2_type 2382 2487 0 1051 267 58 24 chr4 32471389 32472226 -169856121 - L1MA7 LINE L1 -4544 2952 2008 317 225 42 0 chr4 32472299 32472370 -169855977 - MER20 DNA MER1_type -144 75 2 1033 268 94 45 chr4 32473260 32473743 -169854604 - MLT1H LTR MaLR 0 549 1 24 0 0 0 chr4 32475036 32475060 -169853287 + AT_rich Low_complexity Low_complexity 1 24 0 27 73 0 0 chr4 32475748 32475803 -169852544 + AT_rich Low_complexity Low_complexity 1 55 0 1955 138 3 3 chr4 32476758 32477063 -169851284 + AluSx SINE Alu 1 305 0 2055 140 0 9 chr4 32477653 32477968 -169850379 - AluSx SINE Alu 0 312 1 291 339 35 58 chr4 32478479 32478653 -169849694 - MIR SINE MIR -92 170 1 37 23 0 0 chr4 32478756 32478800 -169849547 + AT_rich Low_complexity Low_complexity 1 44 0 23 54 0 0 chr4 32479633 32479670 -169848677 + AT_rich Low_complexity Low_complexity 1 37 0 24 32 0 0 chr4 32481014 32481045 -169847302 + AT_rich Low_complexity Low_complexity 1 31 0 234 346 149 9 chr4 32481125 32481232 -169847115 - MIR SINE MIR -119 143 22 227 241 0 96 chr4 32481227 32481310 -169847037 + MIR SINE MIR 117 191 -71 * 315 0 0 0 chr4 32482619 32482654 -169845693 + (CA)n Simple_repeat Simple_repeat 2 36 0 22 35 0 0 chr4 32483087 32483116 -169845231 + AT_rich Low_complexity Low_complexity 1 29 0 6666 111 26 25 chr4 32483484 32484554 -169843793 - MER11C LTR ERVK 0 1071 1 269 345 24 48 chr4 32484647 32484812 -169843535 - MER5A DNA MER1_type -28 161 1 246 267 22 67 chr4 32485002 32485092 -169843255 + L2 LINE L2 3226 3311 -2 246 265 143 41 chr4 32485370 32485468 -169842879 + LTR16C LTR ERVL 1 108 -383 256 304 29 0 chr4 32485480 32485549 -169842798 + LTR16C LTR ERVL 219 289 -202 344 264 112 8 chr4 32485588 32485713 -169842634 + LTR16C LTR ERVL 354 491 0 236 204 20 0 chr4 32485756 32485805 -169842542 + L2 LINE L2 3264 3313 0 7055 114 30 3 chr4 32486580 32487717 -169840630 - L1M1 LINE L1 -3910 3655 2488 2509 156 47 0 chr4 32487709 32488131 -169840216 - L1M1 LINE L1 -5368 2197 1756 * 306 0 0 0 chr4 32488492 32488526 -169839821 + (TG)n Simple_repeat Simple_repeat 2 35 0 558 330 21 11 chr4 32489815 32490006 -169838341 + MIR SINE MIR 37 229 -33 270 0 0 0 chr4 32490468 32490498 -169837849 + (TA)n Simple_repeat Simple_repeat 2 31 0 210 37 0 0 chr4 32490497 32490524 -169837823 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 * 1875 153 0 4 chr4 32490574 32490855 -169837492 + AluSx SINE Alu 1 280 -32 180 0 0 0 chr4 32490858 32490878 -169837469 + (TAA)n Simple_repeat Simple_repeat 2 21 0 44 35 0 0 chr4 32492278 32492336 -169836011 + AT_rich Low_complexity Low_complexity 1 58 0 3245 84 29 5 chr4 32492645 32493087 -169835260 + MLT2A2 LTR ERVL 1 453 0 626 308 66 31 chr4 32493325 32493611 -169834736 + L2 LINE L2 3003 3298 -15 1979 173 5 22 chr4 32493628 32493997 -169834350 + MER4E LTR ERV1 417 779 0 2596 35 0 6 chr4 32494188 32494499 -169833848 + AluY SINE Alu 1 309 -2 1054 236 57 67 chr4 32494722 32495195 -169833152 - LTR29 LTR ERV1 0 644 137 232 255 0 0 chr4 32495215 32495266 -169833081 - MER34C LTR ERV1 -495 90 40 309 306 0 35 chr4 32495278 32495363 -169832984 - MIR3 SINE MIR -40 168 87 2916 127 5 0 chr4 32495679 32496111 -169832236 - MER57B LTR ERV1 0 434 1 1462 100 130 4 chr4 32496111 32496342 -169832005 - MER57B-int LTR ERV1 0 7537 7278 745 131 25 8 chr4 32496354 32496476 -169831871 - LTR54B LTR ERV1 -370 128 5 11105 136 34 12 chr4 32496476 32497196 -169831151 - MER57B-int LTR ERV1 -387 7150 6447 2168 128 0 7 chr4 32497196 32497501 -169830846 + AluSc SINE Alu 1 303 -6 11105 136 34 12 chr4 32497501 32498571 -169829776 - MER57B-int LTR ERV1 -1090 6447 5321 3202 137 25 27 chr4 32498568 32499085 -169829262 - MER57B-int LTR ERV1 -5676 1861 1346 * 1302 97 0 0 chr4 32499079 32499254 -169829093 - MER57B-int LTR ERV1 -6570 967 793 * 3807 172 30 11 chr4 32499253 32499917 -169828430 - MER57B-int LTR ERV1 -6860 677 1 2939 114 14 0 chr4 32499917 32500345 -169828002 - MER57B LTR ERV1 0 434 1 282 254 63 48 chr4 32500412 32500538 -169827809 - L2 LINE L2 -18 3295 3168 484 211 141 107 chr4 32500543 32500718 -169827629 + MER101B LTR ERV1 1 192 -378 3078 199 42 83 chr4 32500718 32501727 -169826620 - LTR5 LTR ERVK -2 967 1 484 211 141 107 chr4 32501727 32501850 -169826497 + MER101B LTR ERV1 192 309 -261 671 294 0 16 chr4 32502037 32502224 -169826123 - MIR SINE MIR -16 246 63 23 33 0 0 chr4 32502481 32502511 -169825836 + AT_rich Low_complexity Low_complexity 1 30 0 564 340 220 0 chr4 32502511 32502693 -169825654 - L2 LINE L2 -546 2768 2627 202 54 27 27 chr4 32502693 32502730 -169825617 + (TA)n Simple_repeat Simple_repeat 1 37 0 564 340 220 0 chr4 32502730 32502920 -169825427 - L2 LINE L2 -687 2627 2314 1447 162 39 47 chr4 32503020 32503310 -169825037 + Charlie5 DNA MER1_type 2238 2529 -95 653 93 70 78 chr4 32503310 32503439 -169824908 + L1MA9 LINE L1 6180 6307 -5 189 0 0 0 chr4 32503444 32503465 -169824882 + (TTAAA)n Simple_repeat Simple_repeat 3 23 0 1447 162 39 47 chr4 32503465 32503550 -169824797 + Charlie5 DNA MER1_type 2533 2616 -8 275 365 13 6 chr4 32503595 32503751 -169824596 - L2 LINE L2 -1009 2305 2149 188 297 31 62 chr4 32504106 32504234 -169824113 + L2 LINE L2 2586 2709 -605 246 352 66 0 chr4 32505304 32505395 -169822952 + L2 LINE L2 3216 3312 -1 246 250 9 65 chr4 32505532 32505640 -169822707 + T-rich Low_complexity Low_complexity 2 103 0 12708 224 25 26 chr4 32505936 32507118 -169821229 - L1PB2 LINE L1 -2 6206 5024 215 0 67 0 chr4 32507118 32507148 -169821199 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 1931 115 0 62 chr4 32507150 32507454 -169820893 - AluSc SINE Alu -24 285 1 12708 224 25 26 chr4 32507454 32508575 -169819772 - L1PB2 LINE L1 -1185 5023 3902 2324 78 7 3 chr4 32508575 32508883 -169819464 - AluY SINE Alu 0 311 3 12708 224 25 26 chr4 32508883 32511149 -169817198 - L1PB2 LINE L1 -2306 3902 1635 1719 163 137 11 chr4 32511149 32511529 -169816818 - MSTA LTR MaLR 0 428 1 8579 190 27 3 chr4 32511529 32513137 -169815210 - MSTA-int LTR MaLR 0 1651 5 1795 188 122 8 chr4 32513141 32513525 -169814822 - MSTA LTR MaLR 0 428 1 12708 224 25 26 chr4 32513525 32514427 -169813920 - L1PB2 LINE L1 -4575 1633 673 180 0 0 0 chr4 32514427 32514447 -169813900 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 12708 224 25 26 chr4 32514447 32514515 -169813832 - L1PB2 LINE L1 -5535 673 606 319 203 43 0 chr4 32514495 32514564 -169813783 + L1PBb LINE L1 34 105 -6099 * 2918 198 13 30 chr4 32514565 32515187 -169813160 - L1PB2 LINE L1 -5586 618 8 1471 198 4 0 chr4 32515154 32515422 -169812925 - L1PBa LINE L1 -5219 985 717 * 21 0 0 0 chr4 32515651 32515672 -169812675 + AT_rich Low_complexity Low_complexity 1 21 0 8728 192 32 26 chr4 32515677 32518686 -169809661 - L1PB3 LINE L1 -2 6209 3179 6467 84 5 0 chr4 32518695 32519652 -169808695 - L1PA8 LINE L1 0 6172 5216 204 102 61 0 chr4 32519760 32519809 -169808538 + (TA)n Simple_repeat Simple_repeat 1 52 0 23 33 0 0 chr4 32520561 32520591 -169807756 + AT_rich Low_complexity Low_complexity 1 30 0 4434 106 9 3 chr4 32520917 32521571 -169806776 - L1PA8 LINE L1 -1173 4973 4316 * 5451 196 43 5 chr4 32521563 32524569 -169803778 - L1PB3 LINE L1 -3007 3196 1 3264 276 31 29 chr4 32524540 32525676 -169802671 - L1PBa LINE L1 -5230 1633 496 * 304 258 11 22 chr4 32525668 32525757 -169802590 - L1PBa LINE L1 -6754 108 21 * 634 254 105 22 chr4 32526797 32527025 -169801322 - LTR16C LTR ERVL -7 484 238 208 353 26 17 chr4 32527080 32527196 -169801151 - MIR SINE MIR -14 248 132 26 74 0 0 chr4 32527733 32527787 -169800560 + AT_rich Low_complexity Low_complexity 1 54 0 333 356 17 0 chr4 32528783 32528898 -169799449 + L2 LINE L2 3191 3307 -6 422 314 144 15 chr4 32529022 32529293 -169799054 - L2 LINE L2 -3 3310 3005 268 345 97 0 chr4 32529467 32529612 -169798735 + L3 LINE CR1 704 862 -715 371 125 0 0 chr4 32530036 32530092 -169798255 - MSTA LTR MaLR 0 428 373 390 259 91 25 chr4 32530399 32530596 -169797751 - L1ME LINE L1 -318 5803 5594 260 231 46 0 chr4 32530991 32531056 -169797291 + LTR16A LTR ERVL 383 450 0 426 333 56 30 chr4 32531084 32531282 -169797065 - MIR SINE MIR -52 210 8 633 292 82 21 chr4 32533019 32533262 -169795085 - MLT1C LTR MaLR 0 467 210 918 169 46 46 chr4 32533561 32533780 -169794567 + pTR5 LTR ERV1 741 959 -1479 439 266 75 35 chr4 32533782 32533981 -169794366 - LTR7 LTR ERV1 -18 432 226 796 206 86 128 chr4 32534165 32534525 -169793822 - MLT2D LTR ERVL -69 345 1 201 74 0 0 chr4 32534785 32534812 -169793535 + (TG)n Simple_repeat Simple_repeat 2 28 0 22 56 0 0 chr4 32535710 32535746 -169792601 + AT_rich Low_complexity Low_complexity 1 36 0 522 225 0 8 chr4 32536343 32536463 -169791884 + L1MB4 LINE L1 5134 5252 -894 5366 129 22 10 chr4 32536465 32537354 -169790993 + L1PA5 LINE L1 5255 6154 0 2850 197 53 8 chr4 32537354 32538015 -169790332 + L1MB4 LINE L1 5490 6180 0 427 338 110 11 chr4 32538458 32538739 -169789608 + L2 LINE L2 2450 2758 -556 348 311 38 55 chr4 32539034 32539217 -169789130 + L2 LINE L2 3134 3313 0 251 343 7 89 chr4 32539393 32539539 -169788808 + L2 LINE L2 2871 3004 -268 365 394 0 21 chr4 32539573 32539715 -169788632 + L2 LINE L2 3134 3272 0 377 294 37 0 chr4 32540268 32540404 -169787943 - MIR SINE MIR 0 262 122 2357 189 101 31 chr4 32540458 32541040 -169787307 - L1MB7 LINE L1 0 6184 5562 6450 78 4 3 chr4 32541155 32542578 -169785769 - L1PA7 LINE L1 -5 6149 4718 5541 89 12 1 chr4 32542578 32542814 -169785533 + L1P LINE L1 3954 4186 -1960 2315 88 3 0 chr4 32542814 32543109 -169785238 + AluSp SINE Alu 1 296 -17 5541 89 12 1 chr4 32543109 32543644 -169784703 + L1P LINE L1 4186 4733 -1413 28 91 0 0 chr4 32543721 32543798 -169784549 + AT_rich Low_complexity Low_complexity 1 77 0 2337 203 21 6 chr4 32543798 32544280 -169784067 - L1PB4 LINE L1 0 6156 5668 1408 122 43 141 chr4 32544612 32544939 -169783408 - AluSg SINE Alu -4 296 2 867 249 18 9 chr4 32546701 32546918 -169781429 - MER20 DNA MER1_type 0 219 1 384 231 0 0 chr4 32546935 32547039 -169781308 + (TA)n Simple_repeat Simple_repeat 2 105 0 399 309 0 0 chr4 32547163 32547341 -169781006 + (CATG)n Simple_repeat Simple_repeat 2 179 0 244 225 50 25 chr4 32547387 32547467 -169780880 - L1MC4 LINE L1 -1347 6695 6614 2092 100 3 14 chr4 32547507 32547797 -169780550 - AluSp SINE Alu -26 287 1 198 103 0 0 chr4 32547886 32547915 -169780432 + (TCTCTG)n Simple_repeat Simple_repeat 2 30 0 21 0 0 0 chr4 32548829 32548850 -169779497 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr4 32549012 32549039 -169779308 + AT_rich Low_complexity Low_complexity 1 27 0 214 304 193 22 chr4 32549808 32549989 -169778358 - MIR SINE MIR -11 251 40 1598 219 14 19 chr4 32550679 32551039 -169777308 + MLT1A1 LTR MaLR 1 358 -7 517 282 17 55 chr4 32551170 32551351 -169776996 + L2 LINE L2 2916 3089 -224 357 62 0 0 chr4 32551683 32551731 -169776616 + (GA)n Simple_repeat Simple_repeat 1 48 0 4705 58 3 0 chr4 32551951 32552540 -169775807 + LTR10C LTR ERV1 1 591 0 180 265 0 0 chr4 32553082 32553116 -169775231 + L3 LINE CR1 88 121 -1456 25 31 0 0 chr4 32554811 32554843 -169773504 + AT_rich Low_complexity Low_complexity 1 32 0 368 304 116 29 chr4 32554971 32555109 -169773238 + L2 LINE L2 3123 3272 0 21 0 0 0 chr4 32555837 32555858 -169772489 + AT_rich Low_complexity Low_complexity 1 21 0 708 238 33 99 chr4 32556557 32556860 -169771487 - MLT1B LTR MaLR -5 385 103 232 336 45 9 chr4 32558199 32558309 -169770038 + MIR SINE MIR 125 238 -24 616 297 91 7 chr4 32558970 32559246 -169769101 - LTR33A LTR ERVL 0 523 225 5552 118 14 3 chr4 32561871 32562978 -169765369 - L1PA15 LINE L1 -3 6162 5034 1244 226 8 0 chr4 32562978 32563239 -169765108 - L1P LINE L1 -2429 3717 3455 1603 215 0 6 chr4 32563766 32564078 -169764269 + AluJo SINE Alu 1 310 -2 589 181 35 6 chr4 32564082 32564253 -169764094 + GA-rich Low_complexity Low_complexity 2 177 0 296 62 0 42 chr4 32564260 32564308 -169764039 + (GAAA)n Simple_repeat Simple_repeat 3 48 0 342 205 36 0 chr4 32564534 32564617 -169763730 - L1MC1 LINE L1 0 6333 6248 29 0 0 0 chr4 32567222 32567251 -169761096 + AT_rich Low_complexity Low_complexity 1 29 0 1657 156 53 14 chr4 32567260 32567543 -169760804 + AluSq SINE Alu 1 294 -19 368 55 18 0 chr4 32567550 32567605 -169760742 + (TA)n Simple_repeat Simple_repeat 2 57 0 60 69 0 0 chr4 32567625 32567741 -169760606 + AT_rich Low_complexity Low_complexity 1 116 0 3031 162 66 11 chr4 32567803 32568190 -169760157 + MER4D LTR ERV1 3 430 -473 2251 150 28 2 chr4 32568190 32568583 -169759764 + MER57A LTR ERV1 1 403 0 3031 162 66 11 chr4 32568583 32568737 -169759610 + MER4D LTR ERV1 430 574 -329 33 0 0 0 chr4 32568927 32568960 -169759387 + AT_rich Low_complexity Low_complexity 1 33 0 190 276 26 26 chr4 32570231 32570307 -169758040 + L3 LINE CR1 835 910 -667 29 47 0 0 chr4 32571288 32571331 -169757016 + AT_rich Low_complexity Low_complexity 1 43 0 646 189 167 0 chr4 32571972 32572152 -169756195 + L1MB2 LINE L1 5953 6162 -9 1300 258 27 46 chr4 32572560 32573400 -169754947 + L1PA15-16 LINE L1 697 1527 -4676 2294 106 0 3 chr4 32573400 32573712 -169754635 + AluY SINE Alu 1 311 0 1300 258 27 46 chr4 32573712 32573762 -169754585 + L1PA15-16 LINE L1 1527 1576 -4627 373 278 6 23 chr4 32574449 32574625 -169753722 + L1M4 LINE L1 4887 5059 -1087 27 0 0 0 chr4 32574794 32574821 -169753526 + AT_rich Low_complexity Low_complexity 1 27 0 907 191 34 6 chr4 32575602 32575780 -169752567 + MER2 DNA MER2_type 4 186 -159 323 239 14 14 chr4 32575824 32575895 -169752452 + MER2 DNA MER2_type 270 340 -5 859 157 0 0 chr4 32576603 32576737 -169751610 + FRAM SINE Alu 1 134 -42 2150 60 19 48 chr4 32577321 32577636 -169750711 + AluY SINE Alu 1 306 -5 213 313 153 14 chr4 32578610 32578754 -169749593 - MIR SINE MIR 0 262 99 245 29 0 29 chr4 32579048 32579083 -169749264 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 984 268 84 39 chr4 32580714 32581129 -169747218 + L2 LINE L2 2310 2743 -571 1117 254 9 97 chr4 32581136 32581600 -169746747 + MLT2B1 LTR ERVL 1 423 -97 449 204 0 164 chr4 32581576 32581796 -169746551 + MLT2B1 LTR ERVL 336 519 -1 * 391 326 98 68 chr4 32581805 32582339 -169746008 + L2 LINE L2 2757 3301 -12 359 252 130 9 chr4 32582397 32582512 -169745835 - MIR SINE MIR -75 187 59 809 193 20 0 chr4 32582903 32583053 -169745294 + MLT1A1 LTR MaLR 157 309 -56 317 344 47 0 chr4 32583568 32583696 -169744651 + L1MEd LINE L1 601 734 -5385 941 237 81 38 chr4 32583698 32584095 -169744252 - MER96B DNA MER1_type 0 417 4 1607 214 19 3 chr4 32584219 32584542 -169743805 + MER4D LTR ERV1 548 875 -28 598 118 0 0 chr4 32584543 32584628 -169743719 - AluSg/x SINE Alu -20 290 206 276 125 0 0 chr4 32584628 32584668 -169743679 - Alu SINE Alu -262 40 1 358 288 100 31 chr4 32585178 32585407 -169742940 + L2 LINE L2 2732 2976 -338 1915 203 20 50 chr4 32587448 32587886 -169740461 + MSTB LTR MaLR 1 425 -1 385 102 0 0 chr4 32588148 32588207 -169740140 - Alu SINE Alu 0 301 243 311 64 0 21 chr4 32589063 32589110 -169739237 + (TA)n Simple_repeat Simple_repeat 2 47 0 22 0 0 0 chr4 32589170 32589192 -169739155 + AT_rich Low_complexity Low_complexity 1 22 0 38 81 0 0 chr4 32589713 32589800 -169738547 + AT_rich Low_complexity Low_complexity 1 87 0 2124 150 22 8 chr4 32590239 32590598 -169737749 - THE1B LTR MaLR 0 364 1 264 394 69 12 chr4 32590662 32590822 -169737525 + L2 LINE L2 3104 3272 0 208 183 17 17 chr4 32591791 32591851 -169736496 + (TA)n Simple_repeat Simple_repeat 2 61 0 2108 51 0 104 chr4 32591923 32592266 -169736081 + AluY SINE Alu 1 310 0 225 250 50 20 chr4 32593252 32593352 -169734995 + L1ME3 LINE L1 5838 5940 -226 242 246 98 25 chr4 32593496 32593626 -169734721 + L1ME3 LINE L1 5928 6074 -96 6584 222 20 30 chr4 32594016 32596488 -169731859 - L1PA13 LINE L1 -2929 3868 1401 3320 285 26 19 chr4 32596478 32597363 -169730984 - L1PA13 LINE L1 -5896 891 1 * 605 133 0 0 chr4 32599145 32599243 -169729104 + L1PA10 LINE L1 6069 6166 -2 318 280 84 44 chr4 32599515 32599811 -169728536 + L1ME3 LINE L1 5644 5951 -211 459 288 186 11 chr4 32599841 32600018 -169728329 - MER82 DNA MER2_type -2 651 444 355 369 20 0 chr4 32600048 32600197 -169728150 + MIR SINE MIR 2 153 -109 276 30 0 0 chr4 32600237 32600270 -169728077 + (TG)n Simple_repeat Simple_repeat 2 34 0 403 220 22 0 chr4 32600281 32600372 -169727975 - MER82 DNA MER2_type -559 94 2 801 240 93 0 chr4 32600703 32600907 -169727440 + MER58A DNA MER1_type 2 224 0 21 0 0 0 chr4 32601921 32601942 -169726405 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr4 32602797 32602819 -169725528 + AT_rich Low_complexity Low_complexity 1 22 0 2144 119 122 13 chr4 32603532 32603586 -169724761 - MSTA LTR MaLR 0 428 381 3842 117 41 15 chr4 32603586 32603810 -169724537 + L1PA11 LINE L1 5552 5769 -405 2004 88 51 14 chr4 32603810 32604104 -169724243 + AluY SINE Alu 1 305 -6 3842 117 41 15 chr4 32604104 32604486 -169723861 + L1PA11 LINE L1 5769 6174 0 2144 119 122 13 chr4 32604486 32604817 -169723530 - MSTA LTR MaLR -47 381 1 591 339 31 8 chr4 32605735 32605992 -169722355 - LTR16B LTR ERVL -130 334 72 585 299 61 102 chr4 32606023 32606235 -169722112 + L2 LINE L2 1834 2053 -1261 3951 34 0 0 chr4 32606235 32606705 -169721642 - L1PA3 LINE L1 -3 6152 5683 585 299 61 102 chr4 32606705 32607044 -169721303 + L2 LINE L2 2053 2348 -966 2200 130 120 5 chr4 32607044 32607428 -169720919 - MSTA LTR MaLR 0 428 1 585 299 61 102 chr4 32607428 32607642 -169720705 + L2 LINE L2 2348 2569 -745 32 57 0 0 chr4 32609538 32609591 -169718756 + AT_rich Low_complexity Low_complexity 1 53 0 1144 291 17 17 chr4 32609628 32610047 -169718300 - L1ME3 LINE L1 -7 6155 5737 1408 258 67 0 chr4 32610047 32610407 -169717940 - MLT1F1 LTR MaLR 0 567 184 197 323 108 46 chr4 32611048 32611127 -169717220 + L2 LINE L2 3105 3178 -135 2093 88 4 0 chr4 32611127 32611400 -169716947 - AluSx SINE Alu -14 298 25 197 323 108 46 chr4 32611400 32611515 -169716832 + L2 LINE L2 3178 3311 -2 675 161 8 15 chr4 32613117 32613247 -169715100 - AluSq/x SINE Alu -180 133 5 1625 224 102 43 chr4 32613526 32614274 -169714073 + LTR1B LTR ERV1 1 784 -1 1988 136 0 0 chr4 32614407 32614694 -169713653 + AluSx SINE Alu 11 297 -15 27 0 0 0 chr4 32614810 32614837 -169713510 + AT_rich Low_complexity Low_complexity 1 27 0 2711 237 20 24 chr4 32615100 32615906 -169712441 - L1MA9 LINE L1 -3176 3206 2402 2245 209 71 30 chr4 32615906 32616567 -169711780 + L1MA9 LINE L1 3214 3901 -2481 1856 176 6 3 chr4 32616549 32616878 -169711469 + L1MA9 LINE L1 5705 6034 -514 * 292 123 15 15 chr4 32616880 32616945 -169711402 + (TAGA)n Simple_repeat Simple_repeat 3 67 0 2584 157 43 14 chr4 32616945 32617460 -169710887 + L1MA9 LINE L1 6019 6548 0 32 26 0 0 chr4 32617460 32617499 -169710848 + AT_rich Low_complexity Low_complexity 1 39 0 189 0 0 0 chr4 32617957 32617978 -169710369 + (TTC)n Simple_repeat Simple_repeat 1 21 0 813 192 66 0 chr4 32618226 32618377 -169709970 + MLT1B LTR MaLR 1 161 -229 2226 97 10 3 chr4 32619109 32619526 -169708821 - AluSp SINE Alu 0 419 1 26 50 0 0 chr4 32619696 32619736 -169708611 + AT_rich Low_complexity Low_complexity 1 40 0 1578 222 39 66 chr4 32619973 32620460 -169707887 - MER31A LTR ERV1 -8 477 4 21 71 0 0 chr4 32620610 32620652 -169707695 + AT_rich Low_complexity Low_complexity 1 42 0 306 331 51 17 chr4 32622455 32622633 -169705714 - MLT1L LTR MaLR -394 221 38 528 329 93 7 chr4 32623037 32623487 -169704860 - L1MEc LINE L1 -4499 2064 1576 688 307 118 52 chr4 32623509 32624714 -169703633 - L1MEc LINE L1 -5073 1490 206 562 219 9 0 chr4 32625369 32625474 -169702873 + Tigger3(Golem) DNA MER2_type 2 107 -2922 4140 124 56 27 chr4 32625477 32626244 -169702103 + Tigger3(Golem) DNA MER2_type 2240 3028 -1 1976 160 39 24 chr4 32626247 32626359 -169701988 - MLT1B LTR MaLR -3 387 278 2139 117 0 0 chr4 32626359 32626668 -169701679 - AluSc SINE Alu 0 309 1 1976 160 39 24 chr4 32626668 32626936 -169701411 - MLT1B LTR MaLR -112 278 1 888 174 7 0 chr4 32627063 32627212 -169701135 - AluJb SINE Alu -9 303 154 23 68 0 0 chr4 32627690 32627734 -169700613 + AT_rich Low_complexity Low_complexity 1 44 0 466 306 54 7 chr4 32628234 32628381 -169699966 - MIR SINE MIR -95 167 14 330 363 28 28 chr4 32628562 32628741 -169699606 - HAL1b LINE L1 -1080 268 90 33 25 0 0 chr4 32631565 32631605 -169696742 + AT_rich Low_complexity Low_complexity 1 40 0 22 94 0 0 chr4 32631976 32632040 -169696307 + AT_rich Low_complexity Low_complexity 1 64 0 1696 173 73 22 chr4 32632061 32632430 -169695917 + MLT1B LTR MaLR 3 390 0 194 248 69 69 chr4 32634091 32634192 -169694155 + MIR3 SINE MIR 94 194 -14 2005 134 0 7 chr4 32634875 32635185 -169693162 + AluSx SINE Alu 2 309 0 221 116 0 23 chr4 32635752 32635795 -169692552 + (TTTC)n Simple_repeat Simple_repeat 3 44 0 298 397 0 9 chr4 32636150 32636266 -169692081 - MIR SINE MIR -74 134 20 21 0 0 0 chr4 32637479 32637500 -169690847 + AT_rich Low_complexity Low_complexity 1 21 0 1609 210 58 20 chr4 32639234 32639682 -169688665 + MER31B LTR ERV1 2 466 0 1041 141 78 0 chr4 32639999 32640191 -169688156 + L1MA4A LINE L1 6086 6292 -11 6053 55 0 0 chr4 32640689 32641446 -169686901 + L1PA5 LINE L1 5396 6152 -2 24 106 0 0 chr4 32641754 32641848 -169686499 + AT_rich Low_complexity Low_complexity 1 94 0 21 82 0 0 chr4 32643339 32643388 -169684959 + AT_rich Low_complexity Low_complexity 1 49 0 354 23 0 0 chr4 32643585 32643628 -169684719 + (CA)n Simple_repeat Simple_repeat 2 44 0 663 200 0 15 chr4 32643672 32643807 -169684540 - FLAM_A SINE Alu 0 133 1 335 355 91 14 chr4 32643807 32644103 -169684244 - L3 LINE CR1 -79 1498 1180 304 283 71 30 chr4 32644107 32644206 -169684141 + MER5A DNA MER1_type 10 112 -77 1559 256 85 11 chr4 32644344 32644871 -169683476 - L1ME2 LINE L1 0 6164 5599 232 208 57 0 chr4 32644937 32644990 -169683357 - L1MC4 LINE L1 -63 7979 7924 316 284 83 61 chr4 32645150 32645379 -169682968 - L1ME2 LINE L1 -10 6154 5921 1154 201 18 36 chr4 32645384 32645662 -169682685 - L1 LINE L1 -2008 4138 3866 * 4242 228 17 9 chr4 32645657 32646709 -169681638 + L1 LINE L1 4135 5194 -952 * 8888 271 45 19 chr4 32646693 32651254 -169677093 - L1PA12 LINE L1 -2025 5559 881 23 0 0 0 chr4 32651284 32651307 -169677040 + AT_rich Low_complexity Low_complexity 1 23 0 26 64 0 0 chr4 32652384 32652431 -169675916 + AT_rich Low_complexity Low_complexity 1 47 0 2067 269 92 74 chr4 32653602 32654672 -169673675 - MER52A LTR ERV1 0 1755 666 2139 88 138 14 chr4 32655680 32656034 -169672313 + MLT2A1 LTR ERVL 1 398 -46 226 303 0 0 chr4 32656045 32656134 -169672213 - L1MC4 LINE L1 -1340 6702 6614 323 82 41 0 chr4 32656290 32656339 -169672008 + MLT2A2 LTR ERVL 403 453 0 1891 166 0 0 chr4 32656449 32656756 -169671591 - AluSq SINE Alu 0 307 1 1188 232 15 4 chr4 32656759 32657022 -169671325 - MER82 DNA MER2_type -187 466 201 183 102 41 20 chr4 32657313 32657362 -169670985 + (TA)n Simple_repeat Simple_repeat 2 51 0 679 257 50 0 chr4 32657366 32657568 -169670779 - MER82 DNA MER2_type -436 217 6 3934 206 31 37 chr4 32657869 32658686 -169669661 - MER21B LTR ERV1 -49 814 3 2100 120 52 63 chr4 32658759 32659201 -169669146 + LTR23 LTR ERV1 1 437 0 1717 212 57 16 chr4 32659425 32659812 -169668535 - MER87 LTR ERV1 0 541 139 2209 66 3 3 chr4 32659812 32660099 -169668248 + L1PA8 LINE L1 5398 5684 -470 3586 76 6 4 chr4 32660199 32660684 -169667663 + L1PA8 LINE L1 5684 6169 -3 644 221 7 52 chr4 32660684 32660838 -169667509 - MER87 LTR ERV1 -394 147 1 194 62 31 0 chr4 32661616 32661648 -169666699 + (TA)n Simple_repeat Simple_repeat 1 33 0 1941 132 0 30 chr4 32661678 32661974 -169666373 + AluSx SINE Alu 1 287 -25 600 123 0 0 chr4 32662090 32662204 -169666143 + (TG)n Simple_repeat Simple_repeat 2 115 0 22 35 0 0 chr4 32662403 32662432 -169665915 + AT_rich Low_complexity Low_complexity 1 29 0 24 32 0 0 chr4 32663771 32663802 -169664545 + AT_rich Low_complexity Low_complexity 1 31 0 260 298 73 0 chr4 32664124 32664226 -169664121 + MIR SINE MIR 38 152 -66 14379 154 47 10 chr4 32664227 32666848 -169661499 + Tigger2 DNA MER2_type 1 2718 0 307 351 117 15 chr4 32667044 32667249 -169661098 + MIR SINE MIR 24 249 -13 22 35 0 0 chr4 32667614 32667643 -169660704 + AT_rich Low_complexity Low_complexity 1 29 0 7834 230 94 54 chr4 32667860 32671159 -169657188 + L1M2 LINE L1 184 3613 -3235 326 231 64 0 chr4 32671174 32671330 -169657017 + (TGAA)n Simple_repeat Simple_repeat 3 168 0 407 203 0 4 chr4 32671334 32671425 -169656922 + L1M2 LINE L1 3542 3630 -3218 1804 175 0 0 chr4 32671448 32671739 -169656608 + AluJb SINE Alu 1 291 -21 625 236 11 6 chr4 32671741 32671915 -169656432 + L1M2 LINE L1 3606 3780 -3068 * 1525 203 50 3 chr4 32671911 32672275 -169656072 + L1M2 LINE L1 4392 4772 -2076 324 247 12 0 chr4 32672270 32672355 -169655992 - L1MC4a LINE L1 -1505 6303 6218 * 273 128 0 0 chr4 32672444 32672491 -169655856 + (TGGA)n Simple_repeat Simple_repeat 4 50 0 213 108 0 0 chr4 32672613 32672650 -169655697 + (TG)n Simple_repeat Simple_repeat 1 37 0 261 208 42 94 chr4 32673103 32673199 -169655148 - MER96B DNA MER1_type? -16 401 311 782 228 12 50 chr4 32673201 32673442 -169654905 + MER96B DNA MER1_type? 186 417 0 273 75 0 0 chr4 32673491 32673531 -169654816 + (TG)n Simple_repeat Simple_repeat 2 41 0 22 35 0 0 chr4 32673699 32673728 -169654619 + AT_rich Low_complexity Low_complexity 1 29 0 566 295 112 18 chr4 32674364 32674703 -169653644 + L1MB5 LINE L1 31 401 -5983 2844 252 53 32 chr4 32674797 32676963 -169651384 + L1MB5 LINE L1 566 2867 -3515 829 225 5 132 chr4 32677014 32677400 -169650947 + L1MB5 LINE L1 3735 4071 -2311 1920 140 39 16 chr4 32677422 32677729 -169650618 + THE1B LTR MaLR 51 364 0 11215 109 14 0 chr4 32677729 32679284 -169649063 + THE1B-int LTR MaLR 1 1577 -3 2022 143 57 20 chr4 32679287 32679638 -169648709 + THE1B LTR MaLR 1 364 0 1474 256 92 17 chr4 32679643 32680285 -169648062 + L1MB5 LINE L1 4101 4790 -1592 1307 228 115 47 chr4 32680285 32680693 -169647654 + MLT2B3 LTR ERVL 1 436 -118 2648 243 56 40 chr4 32680712 32681138 -169647209 + L1MB5 LINE L1 4765 5183 -1227 1569 240 14 6 chr4 32681138 32681500 -169646847 - MLT1A1 LTR MaLR 0 365 1 2648 243 56 40 chr4 32681500 32682379 -169645968 + L1MB5 LINE L1 5183 6100 -310 2504 61 0 3 chr4 32682379 32682689 -169645658 - AluY SINE Alu -2 309 1 2648 243 56 40 chr4 32682689 32683006 -169645341 + L1MB5 LINE L1 6100 6410 0 1867 182 16 16 chr4 32683728 32684096 -169644251 + L1PA15 LINE L1 5785 6152 -13 249 156 0 0 chr4 32684675 32684720 -169643627 - L1PA15 LINE L1 -134 6031 5987 225 363 49 0 chr4 32684780 32684882 -169643465 - MIR SINE MIR 0 262 156 182 272 40 72 chr4 32684918 32685027 -169643320 + MIR SINE MIR 140 247 -15 2026 136 0 11 chr4 32685027 32685341 -169643006 - AluSx SINE Alu 0 311 1 182 272 40 72 chr4 32685341 32685355 -169642992 + MIR SINE MIR 247 260 -2 2267 117 11 0 chr4 32685721 32686071 -169642276 - L1PA8 LINE L1 -1 6171 5818 6834 114 0 9 chr4 32686071 32687152 -169641195 + L1P LINE L1 2730 3800 -2346 329 285 16 16 chr4 32687203 32687326 -169641021 + GA-rich Low_complexity Low_complexity 2 124 0 184 89 22 22 chr4 32688327 32688372 -169639975 + (TTA)n Simple_repeat Simple_repeat 2 46 0 44 56 0 0 chr4 32688374 32688446 -169639901 + AT_rich Low_complexity Low_complexity 1 72 0 433 321 33 37 chr4 32688532 32688775 -169639572 - L1ME4a LINE L1 -188 5933 5692 217 143 18 71 chr4 32689957 32690013 -169638334 + T-rich Low_complexity Low_complexity 1 53 0 28 0 0 0 chr4 32691252 32691280 -169637067 + AT_rich Low_complexity Low_complexity 1 28 0 1855 130 18 18 chr4 32691527 32691812 -169636535 + AluSx SINE Alu 1 285 -27 23 0 0 0 chr4 32695240 32695263 -169633084 + AT_rich Low_complexity Low_complexity 1 23 0 487 364 124 19 chr4 32695531 32696094 -169632253 - L2 LINE L2 -1750 1564 943 2681 190 19 2 chr4 32696293 32696772 -169631575 - MLT2B1 LTR ERVL -33 487 1 204 254 32 48 chr4 32696850 32696913 -169631434 - L2 LINE L2 -4 3309 3248 2800 19 0 0 chr4 32697290 32697601 -169630746 - AluYa5 SINE Alu 0 311 1 348 286 76 54 chr4 32697771 32697995 -169630352 + L1MC4a LINE L1 5675 5903 -1905 405 311 146 33 chr4 32699193 32699405 -169628942 + MIR SINE MIR 1 236 -26 425 335 97 5 chr4 32699406 32699591 -169628756 - MIR SINE MIR 0 262 61 3139 169 72 83 chr4 32699630 32700709 -169627638 + L1MA6 LINE L1 5171 6290 -7 222 379 7 14 chr4 32701143 32701288 -169627059 - L3b LINE CR1 -329 1254 1111 22 0 0 0 chr4 32702078 32702100 -169626247 + AT_rich Low_complexity Low_complexity 1 22 0 536 369 58 14 chr4 32702163 32702594 -169625753 - L1 LINE L1 -743 5403 4954 721 91 0 18 chr4 32702608 32702718 -169625629 + AluY SINE Alu 198 305 -6 2520 233 100 5 chr4 32702813 32703561 -169624786 - MER97a DNA MER1_type? -14 880 62 31 26 0 0 chr4 32704783 32704821 -169623526 + AT_rich Low_complexity Low_complexity 1 38 0 204 231 0 0 chr4 32705230 32705269 -169623078 + (CATA)n Simple_repeat Simple_repeat 2 40 0 243 190 0 52 chr4 32705274 32705332 -169623015 - LTR66 LTR ERVL -171 439 385 316 359 39 32 chr4 32705559 32705715 -169622632 - MIR SINE MIR -78 184 28 2965 221 13 9 chr4 32705869 32706614 -169621733 - L1PA16 LINE L1 -752 5394 4647 * 4012 146 19 5 chr4 32706613 32707283 -169621064 + L1PA16 LINE L1 5402 6081 -85 979 190 20 20 chr4 32707424 32707671 -169620676 - L1 LINE L1 -752 5394 5148 317 172 62 0 chr4 32707669 32707733 -169620614 - L1MA7 LINE L1 -51 6240 6173 * 296 118 191 0 chr4 32707727 32707795 -169620552 + L1PA16 LINE L1 6077 6157 -9 * 998 127 0 20 chr4 32708116 32708309 -169620038 + AluSg/x SINE Alu 137 326 0 22 80 0 0 chr4 32708743 32708793 -169619554 + AT_rich Low_complexity Low_complexity 1 50 0 4184 195 19 8 chr4 32709465 32710990 -169617357 - L1MA7 LINE L1 -42 6249 4669 1705 193 0 7 chr4 32711368 32711668 -169616679 - AluJb SINE Alu -8 304 7 33 43 0 0 chr4 32711745 32711792 -169616555 + AT_rich Low_complexity Low_complexity 1 47 0 271 301 25 45 chr4 32711810 32712009 -169616338 - L1MEd LINE L1 -4881 1238 1044 34 55 0 0 chr4 32712049 32712104 -169616243 + AT_rich Low_complexity Low_complexity 1 55 0 4398 191 38 13 chr4 32712158 32713000 -169615347 - L1PB4 LINE L1 0 6156 5287 375 41 0 0 chr4 32713000 32713049 -169615298 + (TG)n Simple_repeat Simple_repeat 2 50 0 4398 191 38 13 chr4 32713049 32713328 -169615019 - L1PB4 LINE L1 -869 5287 5017 8465 175 43 6 chr4 32713381 32714968 -169613379 - MSTA-int LTR MaLR -4 1647 2 2219 196 16 7 chr4 32714969 32715393 -169612954 - MSTA LTR MaLR 0 428 1 538 308 87 26 chr4 32715417 32715807 -169612540 - L1MEd LINE L1 -5221 898 485 780 219 0 0 chr4 32715809 32715955 -169612392 + FRAM SINE Alu 1 146 -30 546 67 0 0 chr4 32715957 32716032 -169612315 + (CATA)n Simple_repeat Simple_repeat 2 76 0 419 350 37 37 chr4 32716153 32716476 -169611871 - L1MEd LINE L1 -5733 386 64 555 345 48 16 chr4 32716516 32716832 -169611515 + L2 LINE L2 1876 2201 -1113 250 370 82 19 chr4 32716848 32717165 -169611182 + L2 LINE L2 2687 3023 -249 207 311 67 59 chr4 32717238 32717373 -169610974 - L2 LINE L2 -20 3293 3158 203 403 0 0 chr4 32717476 32717548 -169610799 + L2 LINE L2 3188 3259 -13 719 103 0 0 chr4 32717552 32717659 -169610688 + L1MA4 LINE L1 6188 6294 -6 331 280 7 20 chr4 32719594 32719744 -169608603 + (TA)n Simple_repeat Simple_repeat 1 148 0 574 153 62 49 chr4 32720492 32720636 -169607711 - L1MC2 LINE L1 -9 6335 6190 486 141 12 0 chr4 32720653 32720738 -169607609 + MLT1E1 LTR MaLR 569 654 0 482 150 70 10 chr4 32720738 32720838 -169607509 + L1M LINE L1 5295 5400 -944 2524 236 51 97 chr4 32720916 32721295 -169607052 - L1MC4 LINE L1 -1866 6176 5781 2157 129 0 0 chr4 32721295 32721605 -169606742 - AluY SINE Alu 0 311 2 2524 236 51 97 chr4 32721605 32722150 -169606197 - L1MC4 LINE L1 -2261 5781 5295 1291 264 30 9 chr4 32722150 32722304 -169606043 - MLT1E1 LTR MaLR 0 654 505 1711 166 35 52 chr4 32722304 32722672 -169605675 + THE1B LTR MaLR 1 362 -2 1291 264 30 9 chr4 32722672 32722846 -169605501 - MLT1E1 LTR MaLR -149 505 319 615 263 134 0 chr4 32722864 32723043 -169605304 - MLT1E1 LTR MaLR -399 255 53 1334 190 28 28 chr4 32723242 32723526 -169604821 - LTR32 LTR ERVL -7 464 181 1548 174 48 60 chr4 32723747 32724144 -169604203 + MSTD LTR MaLR 3 394 -2 475 322 133 23 chr4 32724414 32724759 -169603588 + L2 LINE L2 2523 2905 -409 25 75 0 0 chr4 32725779 32725832 -169602515 + AT_rich Low_complexity Low_complexity 1 53 0 2025 212 119 0 chr4 32725845 32726283 -169602064 + MLT1D LTR MaLR 8 497 -8 2086 111 0 7 chr4 32726367 32726655 -169601692 + AluSx SINE Alu 1 286 -26 336 24 0 0 chr4 32726657 32726698 -169601649 + (CA)n Simple_repeat Simple_repeat 1 41 0 2110 99 0 3 chr4 32727746 32728052 -169600295 - AluSx SINE Alu 0 305 1 3608 151 140 8 chr4 32728348 32729078 -169599269 - LTR1B LTR ERV1 0 826 1 367 302 7 40 chr4 32729204 32729353 -169598994 - L1MC4 LINE L1 -1007 5139 4996 2033 128 0 39 chr4 32729842 32730154 -169598193 - AluSx SINE Alu -4 308 9 368 250 43 90 chr4 32730521 32730599 -169597748 - MLT1J LTR MaLR -332 179 99 2428 77 0 0 chr4 32730599 32730910 -169597437 - AluY SINE Alu 0 311 1 368 250 43 90 chr4 32730910 32731019 -169597328 - MLT1J LTR MaLR -412 99 1 21 0 0 0 chr4 32731031 32731052 -169597295 + AT_rich Low_complexity Low_complexity 1 21 0 249 348 106 29 chr4 32731684 32731891 -169596456 + LTR67 LTR ERVL 153 375 -182 247 293 0 0 chr4 32732005 32732063 -169596284 + MER94 DNA DNA 77 134 0 1133 229 8 22 chr4 32732706 32732973 -169595374 + AluJo SINE Alu 6 268 -44 2227 98 20 0 chr4 32733666 32733963 -169594384 - AluSp SINE Alu -10 303 1 190 341 49 67 chr4 32734327 32734491 -169593856 + L2 LINE L2 2810 2970 -344 1451 174 55 26 chr4 32734902 32735213 -169593134 - THE1C LTR MaLR 0 375 56 763 234 206 8 chr4 32735802 32736200 -169592147 - MER69 DNA AcHobo -40 2486 2010 * 1157 309 121 14 chr4 32736192 32736696 -169591651 - MER69 DNA AcHobo -652 574 17 1877 117 26 4 chr4 32737924 32738228 -169590119 - AluSg SINE Alu 0 320 11 23 0 0 0 chr4 32738271 32738294 -169590053 + AT_rich Low_complexity Low_complexity 1 23 0 3237 257 51 38 chr4 32738753 32740492 -169587855 + L1M4b LINE L1 29 2024 -4831 863 255 23 0 chr4 32740513 32740776 -169587571 + L1M4b LINE L1 3080 3348 -3609 2307 105 0 9 chr4 32740778 32741093 -169587254 + AluSx SINE Alu 1 312 0 3903 202 46 1 chr4 32741112 32741958 -169586389 - L1MC2 LINE L1 -11 6333 5450 225 94 0 0 chr4 32742538 32742570 -169585777 + (TA)n Simple_repeat Simple_repeat 1 32 0 293 282 8 8 chr4 32743126 32743243 -169585104 + (TA)n Simple_repeat Simple_repeat 1 117 0 24 32 0 0 chr4 32743457 32743488 -169584859 + AT_rich Low_complexity Low_complexity 1 31 0 339 245 10 31 chr4 32743632 32743730 -169584617 - MIR SINE MIR -119 143 48 838 72 0 0 chr4 32745123 32745234 -169583113 + L1PA6 LINE L1 6044 6154 0 312 258 0 0 chr4 32745358 32745455 -169582892 + (TA)n Simple_repeat Simple_repeat 1 97 0 1410 241 22 22 chr4 32745477 32745842 -169582505 - MLT1A1 LTR MaLR 0 365 1 273 240 66 41 chr4 32747151 32747272 -169581075 + L2 LINE L2 3181 3304 -9 23 0 0 0 chr4 32747861 32747884 -169580463 + AT_rich Low_complexity Low_complexity 1 23 0 675 330 88 4 chr4 32748264 32748537 -169579810 - LTR16A LTR ERVL 0 450 155 1325 211 176 24 chr4 32748926 32749376 -169578971 + MLT2B1 LTR ERVL 1 518 -2 8772 209 29 31 chr4 32749379 32751229 -169577118 + ERVL-B1-B1 LTR ERVL 2 1848 -3916 6990 120 3 7 chr4 32751229 32752238 -169576109 + THE1B-int LTR MaLR 576 1580 0 2193 131 19 25 chr4 32752238 32752604 -169575743 + THE1B LTR MaLR 1 364 0 2837 191 55 28 chr4 32752606 32753215 -169575132 - L1 LINE L1 -813 5333 4699 248 68 0 23 chr4 32753215 32753259 -169575088 + (TTTTG)n Simple_repeat Simple_repeat 2 44 0 2837 191 55 28 chr4 32753259 32753397 -169574950 - L1 LINE L1 -1447 4699 4566 521 209 9 0 chr4 32753401 32753516 -169574831 - L1 LINE L1 -1896 4250 4135 3793 200 20 0 chr4 32753538 32754328 -169574019 + L1PA15-16 LINE L1 1980 2785 -4064 12013 202 13 10 chr4 32754328 32756575 -169571772 + ERVL-B1-B1 LTR ERVL 2709 4962 -802 1061 191 0 0 chr4 32756617 32756795 -169571552 - ERVL LTR ERVL -607 5157 4980 * 2079 174 23 79 chr4 32756794 32757323 -169571024 + ERVL-B1-B1 LTR ERVL 5257 5755 -9 2039 206 48 48 chr4 32757325 32757845 -169570502 + MLT2B1 LTR ERVL 1 520 0 290 329 67 12 chr4 32758637 32758801 -169569546 + MLT1J2 LTR MaLR 64 236 -214 909 288 115 59 chr4 32758894 32759917 -169568430 - HAL1 LINE L1 -803 1704 624 197 279 66 118 chr4 32760512 32760648 -169567699 + L2 LINE L2 3144 3272 0 21 0 0 0 chr4 32760955 32760976 -169567371 + AT_rich Low_complexity Low_complexity 1 21 0 506 242 137 84 chr4 32761063 32761315 -169567032 + MIR SINE MIR 17 262 0 605 271 8 0 chr4 32761458 32761591 -169566756 - FLAM_A SINE Alu -8 134 1 318 264 112 8 chr4 32762900 32763025 -169565322 + MIR SINE MIR 96 233 -29 7843 95 4 3 chr4 32763906 32765819 -169562528 + L1PA7 LINE L1 4226 6154 0 362 311 42 8 chr4 32766039 32766158 -169562189 - MIR SINE MIR -120 142 20 26 30 0 0 chr4 32767378 32767411 -169560936 + AT_rich Low_complexity Low_complexity 1 33 0 1537 192 13 19 chr4 32767448 32767756 -169560591 - AluJo SINE Alu -2 310 5 1180 210 48 20 chr4 32768724 32768972 -169559375 + AluJb SINE Alu 39 293 -19 835 304 159 20 chr4 32769001 32769060 -169559287 - L1 LINE L1 -2833 3313 3264 2047 122 3 0 chr4 32769060 32769372 -169558975 - AluSq SINE Alu 0 313 1 835 304 159 20 chr4 32769372 32770078 -169558269 - L1 LINE L1 -2882 3264 2455 256 291 87 0 chr4 32770628 32770731 -169557616 - MIR SINE MIR -5 257 146 234 360 52 52 chr4 32772570 32772781 -169555566 + MIR SINE MIR 2 212 -50 584 200 30 122 chr4 32773228 32773523 -169554824 + L1M4 LINE L1 3863 4130 -2016 306 289 0 0 chr4 32773645 32773728 -169554619 + L1MEc LINE L1 1388 1470 -4926 1479 291 100 28 chr4 32774002 32775381 -169552966 + L1MEc LINE L1 2262 3779 -2436 2107 123 40 37 chr4 32775381 32775755 -169552592 - THE1C LTR MaLR 0 375 1 1479 291 100 28 chr4 32775755 32776018 -169552329 + L1MEc LINE L1 3779 4022 -2193 398 291 35 21 chr4 32776283 32776424 -169551923 + L2 LINE L2 2928 3070 -243 1911 128 3 3 chr4 32776871 32777203 -169551144 - AluSx SINE Alu 0 332 1 21 89 0 0 chr4 32777203 32777259 -169551088 + AT_rich Low_complexity Low_complexity 1 56 0 198 264 0 0 chr4 32777814 32777867 -169550480 - L2 LINE L2 0 3313 3261 568 266 36 99 chr4 32777955 32778075 -169550272 + L3 LINE CR1 976 1073 -504 1466 168 7 35 chr4 32778075 32778361 -169549986 - AluJb SINE Alu -33 279 2 568 266 36 99 chr4 32778361 32778492 -169549855 + L3 LINE CR1 1073 1211 -366 186 43 0 0 chr4 32778498 32778521 -169549826 + (TAAAAA)n Simple_repeat Simple_repeat 1 23 0 288 263 35 18 chr4 32778932 32779046 -169549301 + L1MEc LINE L1 2994 3109 -3106 14680 180 181 76 chr4 32779103 32783636 -169544711 + L1P LINE L1 6 5011 -1135 420 314 80 43 chr4 32783878 32784325 -169544022 + L1MEc LINE L1 3614 4077 -2138 256 329 19 17 chr4 32784364 32784542 -169543805 + L1MEc LINE L1 4150 4328 -1887 432 0 0 0 chr4 32784737 32784785 -169543562 + (TG)n Simple_repeat Simple_repeat 2 49 0 1616 205 57 32 chr4 32784801 32785205 -169543142 - LTR52 LTR ERVL -7 414 1 977 272 28 35 chr4 32785205 32785492 -169542855 - LTR52-int LTR ERVL 0 3556 3272 902 229 27 8 chr4 32785476 32785738 -169542609 - LTR52-int LTR ERVL -3255 301 3 * 1489 205 57 27 chr4 32785740 32786145 -169542202 - LTR52 LTR ERVL -3 418 2 472 65 26 0 chr4 32786145 32786222 -169542125 + (TCTA)n Simple_repeat Simple_repeat 2 80 0 33 0 0 0 chr4 32786978 32787011 -169541336 + AT_rich Low_complexity Low_complexity 1 33 0 285 340 42 47 chr4 32788109 32788321 -169540026 + L2 LINE L2 1536 1746 -1568 535 176 37 7 chr4 32788408 32788544 -169539803 + L1MD3 LINE L1 7856 7995 0 355 355 57 32 chr4 32788547 32788826 -169539521 + MLT1I LTR MaLR 124 409 0 803 284 46 63 chr4 32790181 32790453 -169537894 + MLT1I LTR MaLR 66 332 -77 2420 59 0 3 chr4 32790453 32790759 -169537588 - AluY SINE Alu -6 305 1 803 284 46 63 chr4 32790759 32790834 -169537513 + MLT1I LTR MaLR 332 407 -2 753 384 103 21 chr4 32790874 32791979 -169536368 + L2 LINE L2 1782 2977 -337 26 0 0 0 chr4 32793186 32793212 -169535135 + AT_rich Low_complexity Low_complexity 1 26 0 237 196 43 0 chr4 32794223 32794269 -169534078 - MER2 DNA MER2_type 0 345 298 213 39 0 0 chr4 32794310 32794336 -169534011 + (GA)n Simple_repeat Simple_repeat 2 27 0 206 213 43 0 chr4 32794340 32794387 -169533960 + GA-rich Low_complexity Low_complexity 4 52 0 1200 225 33 4 chr4 32794389 32794665 -169533682 - MLT2D LTR ERVL -48 366 83 280 302 94 20 chr4 32794692 32794841 -169533506 + L3 LINE CR1 1139 1298 -279 * 367 300 54 23 chr4 32794833 32794963 -169533384 - L2 LINE L2 0 3313 3180 255 61 0 0 chr4 32795221 32795254 -169533093 + (TCCA)n Simple_repeat Simple_repeat 3 35 0 884 285 105 67 chr4 32795923 32796771 -169531576 - L1ME3A LINE L1 -8 6162 5283 1846 302 102 13 chr4 32797098 32798487 -169529860 - L1ME3A LINE L1 -2499 3647 2135 254 286 87 16 chr4 32798986 32799112 -169529235 - L1M2 LINE L1 -4330 2519 2385 21 0 0 0 chr4 32799140 32799161 -169529186 + AT_rich Low_complexity Low_complexity 1 21 0 414 290 97 0 chr4 32799320 32799465 -169528882 - MIR SINE MIR -27 235 77 284 311 80 33 chr4 32799629 32799780 -169528567 + MIR3 SINE MIR 40 197 -11 219 387 11 0 chr4 32799929 32800022 -169528325 - L3 LINE CR1 -410 1167 1074 26 50 0 0 chr4 32800365 32800405 -169527942 + AT_rich Low_complexity Low_complexity 1 40 0 28 0 0 0 chr4 32800876 32800904 -169527443 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr4 32801645 32801671 -169526676 + AT_rich Low_complexity Low_complexity 1 26 0 1670 184 7 3 chr4 32801679 32801972 -169526375 - AluSx SINE Alu -18 294 1 25 51 0 0 chr4 32802279 32802318 -169526029 + AT_rich Low_complexity Low_complexity 1 39 0 1617 292 13 18 chr4 32802407 32802962 -169525385 + L1M3c LINE L1 1 596 -5545 1423 226 117 52 chr4 32802989 32803432 -169524915 + L1M3c LINE L1 669 1140 -5001 379 297 94 67 chr4 32803631 32804327 -169524020 + L1ME LINE L1 3878 4594 -1552 509 267 0 0 chr4 32804605 32804736 -169523611 - L1PB4 LINE L1 -2 6154 6024 373 281 40 85 chr4 32804800 32805156 -169523191 + MLT1J1 LTR MaLR 68 425 -4 290 47 47 0 chr4 32805457 32805500 -169522847 + (CAAAA)n Simple_repeat Simple_repeat 3 47 0 21 0 0 0 chr4 32807175 32807196 -169521151 + AT_rich Low_complexity Low_complexity 1 21 0 434 336 9 0 chr4 32807782 32807892 -169520455 + MER81 DNA DNA 2 112 -2 261 315 7 56 chr4 32808141 32808284 -169520063 + MIR SINE MIR 66 201 -61 386 310 90 33 chr4 32809171 32809416 -169518931 + MLT1L LTR MaLR 306 564 -51 273 260 27 27 chr4 32809514 32809587 -169518760 - L2 LINE L2 -560 2754 2682 276 321 94 47 chr4 32810153 32810365 -169517982 + MIR SINE MIR 24 245 -17 24 32 0 0 chr4 32812203 32812234 -169516113 + AT_rich Low_complexity Low_complexity 1 31 0 410 336 136 8 chr4 32813657 32813922 -169514425 + L2 LINE L2 2397 2695 -619 976 273 70 47 chr4 32814132 32814664 -169513683 + L1ME LINE L1 5240 5804 -366 892 208 12 0 chr4 32814666 32814834 -169513513 - Tigger5 DNA MER2_type 0 2323 2154 193 347 41 10 chr4 32815002 32815100 -169513247 + L2 LINE L2 2954 3054 -259 320 335 62 39 chr4 32815179 32815358 -169512989 + L2 LINE L2 2790 2972 -342 270 253 40 0 chr4 32815444 32815543 -169512804 + (TA)n Simple_repeat Simple_repeat 2 104 0 291 284 106 79 chr4 32816983 32817237 -169511110 - L2 LINE L2 -20 3293 3033 661 230 158 49 chr4 32817934 32817975 -169510372 - MLT2C2 LTR ERVL 0 464 429 680 10 41 0 chr4 32817975 32818072 -169510275 + (TCTA)n Simple_repeat Simple_repeat 2 102 0 661 230 158 49 chr4 32818072 32818334 -169510013 - MLT2C2 LTR ERVL -35 429 128 28 29 0 0 chr4 32818556 32818591 -169509756 + AT_rich Low_complexity Low_complexity 1 35 0 2545 124 3 3 chr4 32818708 32819072 -169509275 + THE1B LTR MaLR 1 364 0 31 0 0 0 chr4 32820843 32820874 -169507473 + AT_rich Low_complexity Low_complexity 1 31 0 310 274 72 67 chr4 32821259 32821482 -169506865 + L1MC4 LINE L1 7684 7907 -135 432 261 118 19 chr4 32823404 32823565 -169504782 - MER5B DNA MER1_type 0 178 2 787 226 100 30 chr4 32826444 32826714 -169501633 - MLT1C LTR MaLR -2 465 177 458 260 98 59 chr4 32826914 32827118 -169501229 - MLT1I LTR MaLR -197 212 1 234 0 0 0 chr4 32827856 32827882 -169500465 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2456 191 29 22 chr4 32828245 32828791 -169499556 - MER89 LTR ERV1 0 559 10 232 426 34 7 chr4 32829032 32829180 -169499167 + MIR SINE MIR 29 180 -82 5113 155 37 27 chr4 32829552 32829675 -169498672 - L1MA7 LINE L1 -4 6287 6167 354 23 0 0 chr4 32829675 32829718 -169498629 + (TG)n Simple_repeat Simple_repeat 2 44 0 5113 155 37 27 chr4 32829718 32830701 -169497646 - L1MA7 LINE L1 -124 6167 5171 369 313 9 27 chr4 32831458 32831570 -169496777 - L2 LINE L2 0 3272 3163 21 36 0 0 chr4 32832758 32832786 -169495561 + AT_rich Low_complexity Low_complexity 1 28 0 8918 184 13 28 chr4 32832806 32833358 -169494989 - L1MA6 LINE L1 -2 6289 5730 2163 132 41 16 chr4 32833358 32833722 -169494625 - THE1C LTR MaLR 0 375 3 9278 133 34 21 chr4 32833724 32835284 -169493063 - THE1C-int LTR MaLR 0 1580 1 2468 110 5 21 chr4 32835284 32835665 -169492682 - THE1C LTR MaLR 0 375 1 8918 184 13 28 chr4 32835665 32837942 -169490405 - L1MA6 LINE L1 -560 5731 3512 374 0 22 0 chr4 32838208 32838254 -169490093 + (CA)n Simple_repeat Simple_repeat 2 48 0 21 0 0 0 chr4 32839701 32839722 -169488625 + AT_rich Low_complexity Low_complexity 1 21 0 446 334 121 57 chr4 32839767 32841061 -169487286 + L2 LINE L2 1894 3266 -6 2317 124 63 0 chr4 32841135 32841514 -169486833 - MER57A LTR ERV1 0 403 1 1760 95 4 0 chr4 32842096 32842328 -169486019 + AluSg SINE Alu 1 233 -77 1306 201 103 34 chr4 32842373 32842810 -169485537 - MLT1C LTR MaLR 0 467 1 2031 288 122 55 chr4 32843029 32844514 -169483833 + L2 LINE L2 1721 3313 0 36 23 0 0 chr4 32846117 32846160 -169482187 + AT_rich Low_complexity Low_complexity 1 43 0 1638 165 76 9 chr4 32847024 32847340 -169481007 - MER1B DNA MER1_type 0 337 1 2573 101 3 6 chr4 32848313 32848669 -169479678 - THE1A LTR MaLR 0 355 1 11072 103 9 4 chr4 32848669 32850241 -169478106 - THE1A-int LTR MaLR 0 1580 1 2044 102 0 1 chr4 32850241 32850553 -169477794 - THE1A LTR MaLR 0 355 1 764 213 76 152 chr4 32851194 32851589 -169476758 + MLT1A1 LTR MaLR 1 365 0 502 335 76 56 chr4 32851804 32852603 -169475744 + L1M4 LINE L1 4520 5334 -812 24 53 0 0 chr4 32852665 32852703 -169475644 + AT_rich Low_complexity Low_complexity 1 38 0 27 29 0 0 chr4 32852730 32852764 -169475583 + AT_rich Low_complexity Low_complexity 1 34 0 213 397 77 0 chr4 32853538 32853616 -169474731 - MIR SINE MIR -96 112 29 1303 204 15 88 chr4 32853627 32853970 -169474377 - MLT1A1 LTR MaLR 0 365 48 184 143 0 32 chr4 32855027 32855090 -169473257 + (TATAA)n Simple_repeat Simple_repeat 4 64 0 254 265 97 105 chr4 32855098 32855336 -169473011 - MIR SINE MIR -14 248 13 279 0 0 0 chr4 32855400 32855431 -169472916 + (A)n Simple_repeat Simple_repeat 1 31 0 335 336 60 0 chr4 32856029 32856145 -169472202 - MIR SINE MIR -6 256 134 220 353 47 24 chr4 32856554 32856639 -169471708 + MIR SINE MIR 17 103 -105 22 0 0 0 chr4 32857120 32857142 -169471205 + AT_rich Low_complexity Low_complexity 1 22 0 432 233 74 95 chr4 32857234 32857423 -169470924 - MIR SINE MIR -6 256 72 322 321 138 62 chr4 32858236 32858541 -169469806 - L1ME LINE L1 -5484 586 259 267 322 7 20 chr4 32858719 32858871 -169469476 - L1MEc LINE L1 -5025 1371 1222 1130 202 7 3 chr4 32858994 32859265 -169469082 + MER7A DNA MER2_type 3 343 -3 291 28 0 0 chr4 32859312 32859348 -169468999 + (TTG)n Simple_repeat Simple_repeat 1 36 0 261 271 0 21 chr4 32859752 32859848 -169468499 + (CATA)n Simple_repeat Simple_repeat 3 96 0 207 0 0 0 chr4 32860524 32860547 -169467800 + (A)n Simple_repeat Simple_repeat 1 23 0 679 325 65 47 chr4 32861780 32862121 -169466226 - L2 LINE L2 -1 3312 2966 1980 102 0 0 chr4 32863178 32863453 -169464894 + AluSc SINE Alu 3 277 -32 182 62 31 0 chr4 32863453 32863485 -169464862 + (CAAAA)n Simple_repeat Simple_repeat 1 33 0 29 60 0 0 chr4 32863662 32863712 -169464635 + AT_rich Low_complexity Low_complexity 1 50 0 590 304 72 5 chr4 32864442 32864649 -169463698 - MIR SINE MIR -13 249 29 28 0 0 0 chr4 32864658 32864686 -169463661 + AT_rich Low_complexity Low_complexity 1 28 0 212 333 85 35 chr4 32865472 32865613 -169462734 - MIR SINE MIR -112 150 3 418 284 52 32 chr4 32865828 32865983 -169462364 + L1MEc LINE L1 20 177 -6219 548 242 0 0 chr4 32865992 32866120 -169462227 - MLT1D LTR MaLR 0 505 378 311 281 74 15 chr4 32866196 32866331 -169462016 + L1MEc LINE L1 1948 2090 -4306 4768 104 20 6 chr4 32866377 32867091 -169461256 - L1PA13 LINE L1 0 6163 5440 265 143 20 0 chr4 32867091 32867140 -169461207 - L1PA13 LINE L1 -1935 4211 4162 1835 257 65 7 chr4 32867140 32867836 -169460511 + L1M4 LINE L1 4374 5109 -1037 313 133 0 0 chr4 32868131 32868176 -169460171 + MLT1I LTR MaLR 362 406 -3 326 234 45 63 chr4 32868244 32868355 -169459992 + L1ME3A LINE L1 6038 6146 -24 270 264 45 0 chr4 32868365 32868475 -169459872 + (TA)n Simple_repeat Simple_repeat 1 115 0 1307 144 66 16 chr4 32869691 32869934 -169458413 - MSTA LTR MaLR 0 428 174 2043 123 3 3 chr4 32870034 32870343 -169458004 + MSTA-int LTR MaLR 1338 1646 -5 1743 158 110 18 chr4 32870348 32870740 -169457607 + MSTA LTR MaLR 1 428 0 2181 114 0 0 chr4 32870833 32871139 -169457208 + AluSg SINE Alu 1 306 -4 406 335 71 0 chr4 32871576 32871746 -169456601 - MER5A DNA MER1_type 0 189 8 214 302 85 28 chr4 32872106 32872212 -169456135 + MIR SINE MIR 2 113 -149 2331 132 0 6 chr4 32872724 32873088 -169455259 + THE1B LTR MaLR 1 362 -2 272 277 85 0 chr4 32874073 32874167 -169454180 - MIR SINE MIR -112 150 49 200 217 22 0 chr4 32874165 32874211 -169454136 - L2 LINE L2 -3 3310 3264 * 24 32 0 0 chr4 32874934 32874965 -169453382 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr4 32875597 32875620 -169452727 + AT_rich Low_complexity Low_complexity 1 23 0 201 288 153 27 chr4 32875627 32875738 -169452609 - L2 LINE L2 0 3313 3189 688 176 21 21 chr4 32875801 32875943 -169452404 + MSTD LTR MaLR 253 394 -2 241 331 66 22 chr4 32875944 32876080 -169452267 - L2 LINE L2 -221 3051 2910 182 275 0 75 chr4 32876220 32876300 -169452047 + MIR SINE MIR 189 262 0 405 0 0 0 chr4 32877243 32877288 -169451059 + (TA)n Simple_repeat Simple_repeat 1 45 0 23 33 0 0 chr4 32877406 32877436 -169450911 + AT_rich Low_complexity Low_complexity 1 30 0 313 329 181 0 chr4 32877451 32877600 -169450747 - MIR SINE MIR -13 249 74 1681 195 3 0 chr4 32878017 32878314 -169450033 + AluJb SINE Alu 1 298 -14 234 0 0 0 chr4 32878314 32878340 -169450007 + (TA)n Simple_repeat Simple_repeat 2 27 0 670 234 43 22 chr4 32878613 32878797 -169449550 - MER5A DNA MER1_type -1 188 1 21 0 0 0 chr4 32880047 32880068 -169448279 + AT_rich Low_complexity Low_complexity 1 21 0 447 324 89 0 chr4 32881803 32881982 -169446365 + MLT1E LTR MaLR 6 200 -342 1021 275 47 55 chr4 32882046 32882450 -169445897 + MLT1E LTR MaLR 193 593 0 2117 123 46 0 chr4 32882456 32882780 -169445567 + L1P3 LINE L1 8 346 -6115 6780 66 11 0 chr4 32882910 32884455 -169443892 - L1PA7 LINE L1 -1 6153 4597 194 310 0 17 chr4 32887094 32887152 -169441195 - MER5A DNA MER1_type -13 176 120 183 300 191 18 chr4 32887104 32887214 -169441133 + MER5A DNA MER1_type 35 163 -26 * 183 184 0 0 chr4 32888377 32888415 -169439932 + (ATG)n Simple_repeat Simple_repeat 1 38 0 588 273 21 62 chr4 32888892 32889086 -169439261 + MIR SINE MIR 42 227 -35 249 324 0 0 chr4 32889496 32889564 -169438783 - L2 LINE L2 -4 3309 3242 2038 141 3 0 chr4 32890110 32890415 -169437932 + AluSx SINE Alu 1 306 -6 628 198 16 0 chr4 32890918 32891044 -169437303 - Charlie1a DNA MER1_type -5 1450 1323 2852 196 21 7 chr4 32891044 32891661 -169436686 + L1PB4 LINE L1 4681 5306 -840 2082 193 237 97 chr4 32891679 32892545 -169435802 + LTR28 LTR ERV1 30 1016 -4 382 205 0 0 chr4 32892548 32892631 -169435716 + L1MC4a LINE L1 5302 5384 -907 1927 156 59 8 chr4 32892675 32893033 -169435314 + L1PB4 LINE L1 5776 6151 -5 82 62 0 0 chr4 32893037 32893182 -169435165 + AT_rich Low_complexity Low_complexity 1 145 0 2108 115 10 0 chr4 32894251 32894547 -169433800 + AluSg SINE Alu 1 299 -11 2216 115 0 10 chr4 32895186 32895498 -169432849 + AluSq SINE Alu 1 309 -4 348 292 196 33 chr4 32895500 32895832 -169432515 + L1MC4a LINE L1 5574 5959 -1849 610 126 34 17 chr4 32896571 32896690 -169431657 + FLAM_C SINE Alu 23 143 0 891 214 50 11 chr4 32896892 32897074 -169431273 - MSTA LTR MaLR -9 419 231 1555 227 5 52 chr4 32897193 32897243 -169431104 - MLT1A1 LTR MaLR 0 365 314 1983 155 0 0 chr4 32897243 32897547 -169430800 - AluSx SINE Alu -7 305 2 1555 227 5 52 chr4 32897547 32897879 -169430468 - MLT1A1 LTR MaLR -51 314 1 4102 222 57 30 chr4 32897905 32898343 -169430004 - Charlie1a DNA MER1_type -1580 1181 756 2256 114 0 0 chr4 32898343 32898651 -169429696 + AluSq SINE Alu 3 310 -3 4102 222 57 30 chr4 32898651 32899361 -169428986 - Charlie1a DNA MER1_type -2005 756 3 1992 119 37 0 chr4 32899709 32900003 -169428344 + AluSx SINE Alu 1 305 -7 1237 300 58 39 chr4 32900439 32901058 -169427289 - L2 LINE L2 -5 3308 2684 2234 228 30 4 chr4 32901549 32902013 -169426334 + MER70B LTR ERVL 1 476 -102 22 35 0 0 chr4 32902659 32902688 -169425659 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 32902739 32902760 -169425587 + AT_rich Low_complexity Low_complexity 1 21 0 2050 112 53 0 chr4 32904543 32904828 -169423519 - AluSp SINE Alu -13 300 1 266 315 39 47 chr4 32904928 32905055 -169423292 - L2 LINE L2 -18 3295 3170 313 146 0 0 chr4 32905325 32905373 -169422974 + MLT1C LTR MaLR 417 464 -3 237 336 186 0 chr4 32905622 32905762 -169422585 + L2 LINE L2 3107 3272 0 212 204 23 0 chr4 32906008 32906052 -169422295 + CT-rich Low_complexity Low_complexity 3 47 0 249 377 18 0 chr4 32906055 32906169 -169422178 - L2 LINE L2 -18 3254 3139 27 0 0 0 chr4 32906354 32906381 -169421966 + AT_rich Low_complexity Low_complexity 1 27 0 27 0 0 0 chr4 32906494 32906521 -169421826 + AT_rich Low_complexity Low_complexity 1 27 0 3024 81 0 0 chr4 32906536 32906974 -169421373 + L1PA4 LINE L1 5729 6166 0 2681 93 3 6 chr4 32907308 32907673 -169420674 + THE1B LTR MaLR 1 364 0 30 89 0 0 chr4 32907823 32907902 -169420445 + AT_rich Low_complexity Low_complexity 1 79 0 692 298 57 4 chr4 32907912 32908157 -169420190 - L1MA9 LINE L1 -37 6275 6018 1139 288 121 41 chr4 32908455 32909133 -169419214 + L2 LINE L2 1981 2712 -602 369 220 165 9 chr4 32909137 32909246 -169419101 - MIR SINE MIR -51 211 86 206 302 46 83 chr4 32909300 32909553 -169418794 + L2 LINE L2 2722 3031 -282 21 0 0 0 chr4 32911574 32911595 -169416752 + AT_rich Low_complexity Low_complexity 1 21 0 30 27 0 0 chr4 32912371 32912408 -169415939 + AT_rich Low_complexity Low_complexity 1 37 0 238 235 0 0 chr4 32912490 32912541 -169415806 - L2 LINE L2 0 3313 3263 631 316 44 5 chr4 32912696 32912902 -169415445 + MIR SINE MIR 49 262 0 281 349 80 17 chr4 32913739 32913914 -169414433 - MIR SINE MIR -2 260 75 626 267 39 17 chr4 32915473 32915653 -169412694 - MLT1C LTR MaLR -84 383 200 204 40 0 0 chr4 32915677 32915702 -169412645 + (TTG)n Simple_repeat Simple_repeat 3 27 0 2256 76 7 0 chr4 32916387 32916664 -169411683 - AluY SINE Alu -18 293 15 1301 153 27 0 chr4 32916672 32916894 -169411453 - L1MA4A LINE L1 -27 6276 6049 386 98 98 0 chr4 32916907 32916968 -169411379 - MLT1C LTR MaLR -292 175 109 2151 303 149 10 chr4 32916978 32918045 -169410302 - L2 LINE L2 -313 3000 1789 21 36 0 0 chr4 32919172 32919200 -169409147 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr4 32921077 32921101 -169407246 + AT_rich Low_complexity Low_complexity 1 24 0 267 263 25 25 chr4 32921264 32921382 -169406965 + L1ME4a LINE L1 5768 5885 -236 235 206 55 14 chr4 32921418 32921491 -169406856 + (TATATG)n Simple_repeat Simple_repeat 2 77 0 4679 116 17 54 chr4 32921554 32921858 -169406489 + MER4E LTR ERV1 1 315 -464 2241 111 0 13 chr4 32921858 32922173 -169406174 + AluSx SINE Alu 1 311 -1 4679 116 17 54 chr4 32922173 32922677 -169405670 + MER4E LTR ERV1 315 779 0 2330 145 81 34 chr4 32922832 32923300 -169405047 - LTR2B LTR ERV1 0 490 1 337 269 79 71 chr4 32923513 32923856 -169404491 - MLT1I LTR MaLR -2 407 70 240 351 58 32 chr4 32924162 32924316 -169404031 - MIR SINE MIR -56 206 49 313 224 22 37 chr4 32924855 32924989 -169403358 + L1ME4a LINE L1 5990 6121 0 234 262 16 16 chr4 32925663 32925724 -169402623 - MER58 DNA MER1_type -129 86 26 742 300 57 24 chr4 32925742 32925989 -169402358 - MIR SINE MIR -5 257 3 1597 255 50 2 chr4 32926068 32926472 -169401875 - MLT1E2 LTR MaLR -4 622 200 2291 165 34 77 chr4 32926482 32926960 -169401387 + LTR32 LTR ERVL 15 471 0 534 142 172 58 chr4 32926990 32927164 -169401183 - MLT1E3 LTR MaLR -442 184 5 290 289 195 13 chr4 32927829 32927978 -169400369 + L2 LINE L2 2916 3091 -181 1103 276 76 11 chr4 32928114 32928484 -169399863 - MLT1I LTR MaLR -8 401 8 474 202 0 0 chr4 32928515 32928604 -169399743 + MLT1A1 LTR MaLR 1 89 -285 600 236 6 45 chr4 32928823 32928980 -169399367 + MLT1B LTR MaLR 1 151 -239 1164 341 57 24 chr4 32928994 32930017 -169398330 - L1MEc LINE L1 -5306 1090 35 39 22 0 0 chr4 32930309 32930355 -169397992 + AT_rich Low_complexity Low_complexity 1 46 0 5476 171 43 13 chr4 32930857 32932044 -169396303 + L1MC1 LINE L1 5107 6333 0 300 115 0 66 chr4 32932035 32932096 -169396251 + L1MB2 LINE L1 6111 6167 -4 * 32 0 0 0 chr4 32932096 32932128 -169396219 + AT_rich Low_complexity Low_complexity 1 32 0 180 77 0 0 chr4 32932343 32932369 -169395978 + (T)n Simple_repeat Simple_repeat 1 26 0 195 217 0 0 chr4 32932823 32932883 -169395464 + (TG)n Simple_repeat Simple_repeat 2 61 0 1179 196 43 40 chr4 32933747 32934022 -169394325 + MLT1A1 LTR MaLR 56 331 -34 717 245 6 12 chr4 32934022 32934185 -169394162 + MER70A LTR ERVL 1 162 -310 * 2115 219 39 49 chr4 32934181 32934675 -169393672 + MER70B LTR ERVL 90 578 0 235 158 0 0 chr4 32934677 32934715 -169393632 + MLT1A1 LTR MaLR 327 364 -1 797 181 24 0 chr4 32934716 32934843 -169393504 - MER20 DNA MER1_type -88 131 2 1125 286 28 55 chr4 32935224 32935336 -169393011 - LTR16C LTR ERVL -4 487 373 2089 135 48 25 chr4 32935336 32935692 -169392655 + THE1B LTR MaLR 1 364 0 10332 176 1 0 chr4 32935692 32937270 -169391077 + THE1B-int LTR MaLR 1 1580 0 2029 136 57 28 chr4 32937270 32937624 -169390723 + THE1B LTR MaLR 1 364 0 1125 286 28 55 chr4 32937624 32937908 -169390439 - LTR16C LTR ERVL -115 376 100 439 260 182 17 chr4 32938275 32938456 -169389891 - MIR SINE MIR -50 212 2 25 0 0 0 chr4 32938737 32938762 -169389585 + AT_rich Low_complexity Low_complexity 1 25 0 307 349 98 23 chr4 32939745 32939960 -169388387 - MIR SINE MIR -4 258 28 623 186 47 16 chr4 32940523 32940652 -169387695 + FLAM_C SINE Alu 1 133 0 4467 105 76 26 chr4 32940691 32941705 -169386642 - MER11A LTR ERVK -1 1265 1 1992 172 90 10 chr4 32941705 32942095 -169386252 + MSTA LTR MaLR 8 428 0 233 121 0 0 chr4 32942095 32942128 -169386219 + AluJb SINE Alu 165 197 -105 493 193 174 0 chr4 32942132 32942241 -169386106 + AluJb SINE Alu 176 303 -9 2179 114 7 0 chr4 32942486 32942784 -169385563 + AluSx SINE Alu 1 300 -12 2793 165 72 42 chr4 32942898 32943492 -169384855 - LTR9 LTR ERV1 0 612 1 311 332 79 55 chr4 32943654 32944109 -169384238 + LTR67 LTR ERVL 91 556 -1 399 305 10 90 chr4 32944240 32944440 -169383907 - MIR3 SINE MIR -6 202 19 224 312 127 40 chr4 32944915 32945088 -169383259 + MIR SINE MIR 65 252 -10 199 371 98 21 chr4 32945830 32945973 -169382374 - L3b LINE CR1 -93 1490 1337 766 218 59 0 chr4 32946279 32946449 -169381898 - MER3 DNA MER1_type 0 209 30 3617 228 36 70 chr4 32947587 32948065 -169380282 - L1MB8 LINE L1 -51 6127 5634 2029 96 29 0 chr4 32948065 32948358 -169379989 - AluSg SINE Alu 0 301 1 3617 228 36 70 chr4 32948358 32948823 -169379524 - L1MB8 LINE L1 -544 5634 5155 1729 155 49 3 chr4 32948823 32949107 -169379240 + AluJo SINE Alu 16 312 0 3617 228 36 70 chr4 32949107 32949978 -169378369 - L1MB8 LINE L1 -1023 5155 4441 1882 125 24 10 chr4 32949978 32950273 -169378074 - AluSx SINE Alu -13 299 1 3617 228 36 70 chr4 32950273 32950830 -169377517 - L1MB8 LINE L1 -1737 4441 3867 186 43 0 0 chr4 32950931 32950954 -169377393 + (TCC)n Simple_repeat Simple_repeat 1 23 0 2702 257 98 7 chr4 32950954 32952085 -169376262 - L1MB8 LINE L1 -2529 3617 2384 188 254 0 18 chr4 32952177 32952232 -169376115 - MIR SINE MIR -150 112 59 2139 108 9 19 chr4 32952260 32952576 -169375771 + AluSq SINE Alu 1 313 0 255 310 18 35 chr4 32953433 32953569 -169374778 + FLAM_C SINE Alu 23 156 0 2473 155 29 7 chr4 32953745 32954164 -169374183 - MSTA LTR MaLR 0 428 1 361 288 146 26 chr4 32955337 32955570 -169372777 - MIR SINE MIR -1 261 1 1145 248 52 83 chr4 32955610 32955716 -169372631 - MLT1F1 LTR MaLR 0 567 459 1991 155 47 6 chr4 32955716 32956038 -169372309 - MER1B DNA MER1_type -2 335 1 1145 248 52 83 chr4 32956038 32956447 -169371900 - MLT1F1 LTR MaLR -108 459 68 199 292 12 119 chr4 32956860 32957028 -169371319 - MIR SINE MIR -7 255 106 572 256 14 70 chr4 32957903 32958118 -169370229 + MLT2B1 LTR ERVL 276 478 -42 275 156 21 21 chr4 32958126 32958222 -169370125 + (TA)n Simple_repeat Simple_repeat 1 96 0 235 88 0 0 chr4 32958231 32958265 -169370082 + MLT2B1 LTR ERVL 482 515 0 456 296 13 7 chr4 32958272 32958424 -169369923 - MLT1I LTR MaLR -206 203 51 227 282 13 26 chr4 32958666 32958744 -169369603 + MIR SINE MIR 183 259 -3 223 177 16 32 chr4 32958753 32958815 -169369532 + (TTA)n Simple_repeat Simple_repeat 1 61 0 436 239 54 83 chr4 32959387 32959592 -169368755 + MIR SINE MIR 48 246 -16 1422 267 85 30 chr4 32959663 32960157 -169368190 - MLT1H1 LTR MaLR 0 555 35 711 219 77 5 chr4 32960585 32960781 -169367566 - MER58C DNA MER1_type -5 210 1 493 224 61 139 chr4 32961522 32961762 -169366585 - MER69 DNA AcHobo -1399 1127 913 1781 152 82 114 chr4 32961762 32962202 -169366145 + MSTB LTR MaLR 1 426 0 493 224 61 139 chr4 32962202 32962256 -169366091 - MER69 DNA AcHobo -1613 913 856 8762 173 28 32 chr4 32962256 32964690 -169363657 - L1M1 LINE L1 -548 5755 3308 5464 206 19 68 chr4 32964699 32965230 -169363117 - L1M2 LINE L1 -3929 3279 2723 1934 163 0 7 chr4 32965230 32965525 -169362822 + AluSx SINE Alu 3 295 -17 5464 206 19 68 chr4 32965525 32966712 -169361635 - L1M2 LINE L1 -4485 2723 1652 2358 249 66 30 chr4 32966696 32967458 -169360889 - L1M2 LINE L1 -6322 887 29 * 312 260 81 52 chr4 32967482 32967653 -169360694 - MER69 DNA AcHobo -1737 789 614 279 266 116 22 chr4 32967653 32967908 -169360439 - MER34 LTR ERV1 0 726 354 310 221 48 39 chr4 32968075 32968179 -169360168 - MER34 LTR ERV1 -412 130 26 1626 262 69 19 chr4 32968207 32968772 -169359575 - MER69 DNA AcHobo -1927 599 7 32 0 0 0 chr4 32968972 32969004 -169359343 + AT_rich Low_complexity Low_complexity 1 32 0 1903 125 38 14 chr4 32969006 32969293 -169359054 + AluSc SINE Alu 1 294 -15 311 192 61 40 chr4 32970187 32970286 -169358061 - MLT1I LTR MaLR -305 104 4 342 0 0 0 chr4 32972479 32972517 -169355830 + (CAG)n Simple_repeat Simple_repeat 2 39 0 279 206 38 8 chr4 32975592 32975723 -169352624 + GA-rich Low_complexity Low_complexity 1 135 0 331 259 0 35 chr4 32977351 32977521 -169350826 + (CGG)n Simple_repeat Simple_repeat 1 164 0 22 0 0 0 chr4 32982320 32982342 -169346005 + AT_rich Low_complexity Low_complexity 1 22 0 243 88 0 0 chr4 32983635 32983669 -169344678 + (TA)n Simple_repeat Simple_repeat 1 34 0 234 0 0 0 chr4 32983668 32983694 -169344653 + (GA)n Simple_repeat Simple_repeat 2 27 0 * 346 335 12 12 chr4 32984442 32984575 -169343772 - MIR SINE MIR -56 152 19 29 47 0 0 chr4 32985295 32985338 -169343009 + AT_rich Low_complexity Low_complexity 1 43 0 28 61 0 0 chr4 32985470 32985519 -169342828 + AT_rich Low_complexity Low_complexity 1 49 0 222 156 0 0 chr4 32986689 32986734 -169341613 + (TG)n Simple_repeat Simple_repeat 2 46 0 24 0 0 0 chr4 32986801 32986825 -169341522 + AT_rich Low_complexity Low_complexity 1 24 0 21 82 0 0 chr4 32986875 32986924 -169341423 + AT_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr4 32987402 32987423 -169340924 + AT_rich Low_complexity Low_complexity 1 21 0 609 236 65 41 chr4 32987860 32988106 -169340241 - MER112 DNA MER1_type -1 255 4 628 205 8 8 chr4 32988828 32988955 -169339392 - FLAM_A SINE Alu -8 134 8 2073 141 0 3 chr4 32989599 32989905 -169338442 - AluSx SINE Alu -7 305 1 395 216 10 49 chr4 32990041 32990143 -169338204 + L2 LINE L2 3174 3271 -1 26 0 0 0 chr4 32991871 32991897 -169336450 + AT_rich Low_complexity Low_complexity 1 26 0 2333 74 0 3 chr4 32991897 32992207 -169336140 - AluY SINE Alu -2 309 1 325 229 29 48 chr4 32992446 32992551 -169335796 + MIR SINE MIR 35 137 -71 22 0 0 0 chr4 32992720 32992742 -169335605 + AT_rich Low_complexity Low_complexity 1 22 0 795 201 20 0 chr4 32992743 32992892 -169335455 + FRAM SINE Alu 1 152 -14 186 43 0 0 chr4 32992908 32992931 -169335416 + (TG)n Simple_repeat Simple_repeat 2 24 0 1080 237 15 57 chr4 32993226 32993559 -169334788 - MLT1B LTR MaLR -6 384 66 21 0 0 0 chr4 32994428 32994449 -169333898 + AT_rich Low_complexity Low_complexity 1 21 0 306 65 48 0 chr4 32994483 32994545 -169333802 + (TA)n Simple_repeat Simple_repeat 2 66 0 226 303 15 0 chr4 32995037 32995103 -169333244 + (TATG)n Simple_repeat Simple_repeat 1 67 0 320 326 11 11 chr4 32995167 32995262 -169333085 - L2 LINE L2 -30 3283 3189 629 338 18 9 chr4 32995329 32995557 -169332790 - MIR SINE MIR -28 234 5 906 207 47 61 chr4 32996652 32996865 -169331482 - AluJb SINE Alu -102 210 1 201 74 0 0 chr4 32999092 32999119 -169329228 + (CA)n Simple_repeat Simple_repeat 1 27 0 274 294 25 84 chr4 32999886 33000005 -169328342 - L2 LINE L2 -107 3165 3054 508 289 55 68 chr4 33000225 33000623 -169327724 + MARNA DNA Mariner 185 577 -9 228 67 0 0 chr4 33001140 33001170 -169327177 + (TG)n Simple_repeat Simple_repeat 1 30 0 2092 104 39 0 chr4 33001221 33001500 -169326847 - AluSx SINE Alu -22 290 1 1790 212 46 38 chr4 33002686 33003185 -169325162 - MLT1D LTR MaLR -2 503 1 1360 235 57 29 chr4 33003683 33004066 -169324281 - MSTD LTR MaLR -2 394 1 184 268 99 14 chr4 33005277 33005348 -169322999 + MIR SINE MIR 116 192 -70 488 265 0 0 chr4 33005397 33005514 -169322833 + MER20 DNA MER1_type 103 219 0 378 233 26 60 chr4 33005683 33005799 -169322548 - LTR33 LTR ERVL -377 144 33 288 364 73 26 chr4 33006058 33006209 -169322138 - L2 LINE L2 0 3272 3115 1584 99 4 13 chr4 33007492 33007724 -169320623 - AluSg/x SINE Alu 0 312 83 318 106 0 0 chr4 33008158 33008205 -169320142 + (A)n Simple_repeat Simple_repeat 1 47 0 288 0 0 0 chr4 33009534 33009566 -169318781 + (TG)n Simple_repeat Simple_repeat 2 33 0 387 310 80 42 chr4 33010276 33010489 -169317858 - MIR SINE MIR -11 251 31 590 309 17 51 chr4 33010914 33011010 -169317337 - MIR SINE MIR -33 229 131 1720 185 44 95 chr4 33011010 33011174 -169317173 - MSTB2 LTR MaLR 0 457 286 2139 102 0 0 chr4 33011174 33011458 -169316889 + AluSc SINE Alu 1 284 -25 1720 185 44 95 chr4 33011458 33011775 -169316572 - MSTB2 LTR MaLR -171 286 1 590 309 17 51 chr4 33011775 33011914 -169316433 - MIR SINE MIR -131 131 2 773 316 79 50 chr4 33012701 33013233 -169315114 + L2 LINE L2 2718 3271 -1 677 282 92 71 chr4 33013256 33013721 -169314626 - L2 LINE L2 -11 3302 2828 2217 106 0 0 chr4 33014318 33014620 -169313727 - AluSx SINE Alu -10 302 1 2285 123 3 3 chr4 33015713 33016072 -169312275 + L1P LINE L1 4130 4488 -1658 1120 203 38 25 chr4 33016716 33017031 -169311316 - MER33 DNA MER1_type -1 323 5 236 302 80 62 chr4 33017126 33017351 -169310996 - MIR SINE MIR -26 236 8 21 0 0 0 chr4 33017427 33017448 -169310899 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 33017664 33017685 -169310662 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr4 33018313 33018335 -169310012 + AT_rich Low_complexity Low_complexity 1 22 0 1931 81 81 0 chr4 33018340 33018613 -169309734 + AluSq SINE Alu 1 295 -18 1503 124 39 8 chr4 33018849 33019083 -169309264 + AluSg SINE Alu 50 290 -20 252 0 0 0 chr4 33020035 33020063 -169308284 + (TG)n Simple_repeat Simple_repeat 2 29 0 391 309 42 24 chr4 33020243 33020408 -169307939 + MIR SINE MIR 2 169 -93 250 342 117 0 chr4 33022027 33022138 -169306209 + MIR SINE MIR 21 144 -64 2078 109 0 34 chr4 33022181 33022503 -169305844 - AluSx SINE Alu -1 311 1 335 121 17 0 chr4 33023402 33023460 -169304887 + AluS SINE Alu 1 59 -249 261 0 0 0 chr4 33024815 33024844 -169303503 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1960 123 0 0 chr4 33024845 33025122 -169303225 - AluSc SINE Alu -32 277 1 225 0 0 0 chr4 33025229 33025254 -169303093 + (T)n Simple_repeat Simple_repeat 1 25 0 576 189 27 0 chr4 33026362 33026473 -169301874 + FLAM_A SINE Alu 10 123 -19 2124 121 3 0 chr4 33031985 33032291 -169296056 - AluSx SINE Alu -5 307 1 219 231 0 19 chr4 33032505 33032557 -169295790 + CT-rich Low_complexity Low_complexity 2 52 0 180 356 0 0 chr4 33032847 33032906 -169295441 - MIR SINE MIR -19 243 185 1766 178 3 7 chr4 33033031 33033324 -169295023 - AluSx SINE Alu -20 292 1 265 324 162 0 chr4 33034370 33034481 -169293866 - MIR SINE MIR -59 149 21 383 275 33 17 chr4 33034618 33034738 -169293609 - L2 LINE L2 -1 3312 3191 281 319 33 11 chr4 33034776 33034867 -169293480 - L2 LINE L2 -15 3298 3206 1360 146 0 0 chr4 33035469 33035674 -169292673 + AluSg/x SINE Alu 108 312 0 1612 82 0 0 chr4 33036371 33036577 -169291770 - AluY SINE Alu -105 206 1 2308 87 3 0 chr4 33036675 33036973 -169291374 - AluSp SINE Alu -14 299 1 413 298 55 9 chr4 33037466 33037626 -169290721 + MIR SINE MIR 43 205 -57 1383 225 53 50 chr4 33037641 33038135 -169290212 - MER39 LTR ERV1 0 707 1 231 88 0 0 chr4 33039071 33039105 -169289242 + (TG)n Simple_repeat Simple_repeat 1 34 0 463 306 19 38 chr4 33045379 33045539 -169282808 - MIR SINE MIR -58 204 48 1750 169 6 13 chr4 33045777 33046091 -169282256 + AluJb SINE Alu 1 312 0 550 308 76 32 chr4 33046356 33046606 -169281741 + MIR SINE MIR 2 262 0 22 35 0 0 chr4 33049856 33049885 -169278462 + AT_rich Low_complexity Low_complexity 1 29 0 28 48 0 0 chr4 33050164 33050206 -169278141 + AT_rich Low_complexity Low_complexity 1 42 0 196 214 36 18 chr4 33050239 33050295 -169278052 + MIR SINE MIR 81 137 -125 680 175 0 8 chr4 33050299 33050419 -169277928 - FLAM_A SINE Alu -14 119 1 1845 119 90 0 chr4 33052097 33052375 -169275972 - AluSx SINE Alu -9 303 1 2245 66 0 7 chr4 33052384 33052713 -169275634 - AluY SINE Alu 0 327 1 24 0 0 0 chr4 33053764 33053788 -169274559 + AT_rich Low_complexity Low_complexity 1 24 0 187 290 46 92 chr4 33054094 33054225 -169274122 - L3 LINE CR1 -1348 229 105 2092 117 0 20 chr4 33054997 33055296 -169273051 - AluSg SINE Alu -16 294 2 257 300 9 9 chr4 33055431 33055541 -169272806 + (TA)n Simple_repeat Simple_repeat 2 111 0 236 419 22 13 chr4 33055751 33055980 -169272367 - L2 LINE L2 -222 3050 2820 205 195 0 0 chr4 33056645 33056686 -169271661 + (TAA)n Simple_repeat Simple_repeat 3 43 0 259 320 0 13 chr4 33057243 33057321 -169271026 - MIR SINE MIR -115 147 71 367 373 104 19 chr4 33057459 33058217 -169270130 - L2 LINE L2 -1504 1810 988 1569 199 7 10 chr4 33058578 33058869 -169269478 - AluJo SINE Alu -16 296 7 744 219 25 6 chr4 33059112 33059272 -169269075 - MLT1A1 LTR MaLR -202 163 1 2002 133 10 3 chr4 33059395 33059688 -169268659 + AluSc SINE Alu 1 295 -14 936 193 32 5 chr4 33059730 33059917 -169268430 + MLT1A1 LTR MaLR 174 365 0 593 280 129 32 chr4 33059931 33060335 -169268012 + L2 LINE L2 1702 2144 -1170 716 220 70 78 chr4 33060428 33060676 -169267671 + MIR SINE MIR 29 260 -2 671 318 99 52 chr4 33060679 33061037 -169267310 + L2 LINE L2 2327 2667 -646 1365 132 78 0 chr4 33061037 33061256 -169267091 - MER46A DNA MER2_type 0 236 1 671 318 99 52 chr4 33061256 33061446 -169266901 + L2 LINE L2 2667 2847 -466 2118 102 14 10 chr4 33061446 33061740 -169266607 - AluSg SINE Alu -15 295 1 671 318 99 52 chr4 33061740 33061909 -169266438 + L2 LINE L2 2847 3089 -224 191 323 48 0 chr4 33064530 33064592 -169263755 + MIR SINE MIR 87 151 -57 23 54 0 0 chr4 33065624 33065661 -169262686 + AT_rich Low_complexity Low_complexity 1 37 0 2124 117 7 0 chr4 33065747 33066045 -169262302 - AluSx SINE Alu -12 300 1 987 197 98 8 chr4 33066652 33066886 -169261461 - ORSL DNA AcHobo -20 255 1 212 329 73 36 chr4 33066896 33067033 -169261314 - L2 LINE L2 -214 3058 2917 240 404 93 11 chr4 33068504 33068687 -169259660 - L2 LINE L2 -41 3231 3034 2051 122 7 0 chr4 33068726 33069013 -169259334 - AluSq SINE Alu -20 293 5 270 322 29 0 chr4 33069174 33069348 -169258999 + (TA)n Simple_repeat Simple_repeat 1 179 0 3924 157 15 40 chr4 33070293 33071020 -169257327 - MER50 LTR ERV1 -23 711 3 186 43 0 0 chr4 33071854 33071877 -169256470 + (TAA)n Simple_repeat Simple_repeat 2 24 0 210 315 167 10 chr4 33072210 33072362 -169255985 + MIR SINE MIR 16 191 -71 849 283 121 35 chr4 33072824 33073420 -169254927 + L2 LINE L2 2590 3229 -84 476 291 126 27 chr4 33076095 33076318 -169252029 - MIR SINE MIR -9 253 9 29 0 0 0 chr4 33077682 33077711 -169250636 + AT_rich Low_complexity Low_complexity 1 29 0 184 234 64 106 chr4 33078714 33078808 -169249539 - L2 LINE L2 -2441 873 784 747 0 0 0 chr4 33079157 33079240 -169249107 + (TTTC)n Simple_repeat Simple_repeat 2 84 0 238 281 31 0 chr4 33081054 33081118 -169247229 + CT-rich Low_complexity Low_complexity 1 66 0 1295 172 0 9 chr4 33081800 33082021 -169246326 - AluJb SINE Alu -9 303 85 440 276 116 55 chr4 33082281 33082480 -169245867 - MIR SINE MIR -21 241 31 539 299 12 24 chr4 33082976 33083143 -169245204 + MIR SINE MIR 13 177 -85 193 196 109 0 chr4 33086842 33086888 -169241459 + MIR SINE MIR 128 178 -84 192 167 0 0 chr4 33087387 33087435 -169240912 + CT-rich Low_complexity Low_complexity 4 51 0 321 315 54 8 chr4 33087766 33087896 -169240451 - L2 LINE L2 0 3272 3137 1628 211 74 76 chr4 33088234 33088732 -169239615 - MLT1D LTR MaLR 0 505 9 638 242 37 48 chr4 33089189 33089246 -169239101 - MIR SINE MIR -28 234 178 828 244 11 0 chr4 33089246 33089422 -169238925 + MER45A DNA AcHobo 1 178 0 638 242 37 48 chr4 33089422 33089585 -169238762 - MIR SINE MIR -84 178 14 260 250 29 15 chr4 33089612 33089680 -169238667 + L2 LINE L2 3200 3268 -4 276 149 0 0 chr4 33089980 33090027 -169238320 + (TA)n Simple_repeat Simple_repeat 1 47 0 1897 153 6 35 chr4 33090285 33090632 -169237715 + MER1B DNA MER1_type 1 337 0 343 303 113 43 chr4 33090698 33090883 -169237464 + MIR SINE MIR 9 206 -56 253 304 75 99 chr4 33091245 33091446 -169236901 - L2 LINE L2 -1 3271 3076 33 43 0 0 chr4 33092906 33092953 -169235394 + AT_rich Low_complexity Low_complexity 1 47 0 184 77 51 0 chr4 33092953 33092992 -169235355 + (TA)n Simple_repeat Simple_repeat 2 42 0 207 114 0 0 chr4 33093999 33094034 -169234313 + (TTCC)n Simple_repeat Simple_repeat 3 37 0 21 0 0 0 chr4 33094147 33094168 -169234179 + AT_rich Low_complexity Low_complexity 1 21 0 191 348 29 0 chr4 33094376 33094445 -169233902 + MIR SINE MIR 86 156 -106 225 0 0 0 chr4 33095104 33095129 -169233218 + (TG)n Simple_repeat Simple_repeat 1 25 0 22 35 0 0 chr4 33095577 33095606 -169232741 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 33097028 33097049 -169231298 + AT_rich Low_complexity Low_complexity 1 21 0 228 319 97 40 chr4 33097711 33097937 -169230410 - L2 LINE L2 -465 2849 2611 * 311 328 106 10 chr4 33097935 33098133 -169230214 + L2 LINE L2 3097 3313 0 23 0 0 0 chr4 33098136 33098159 -169230188 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr4 33098271 33098294 -169230053 + AT_rich Low_complexity Low_complexity 1 23 0 1720 154 29 0 chr4 33098295 33098568 -169229779 - AluSx SINE Alu -31 281 1 198 128 0 0 chr4 33098990 33099029 -169229318 + (A)n Simple_repeat Simple_repeat 1 39 0 1479 206 24 10 chr4 33100671 33100967 -169227380 - AluJo SINE Alu -12 300 1 900 238 51 28 chr4 33101209 33101258 -169227089 - MER20 DNA MER1_type 0 219 173 1749 176 88 29 chr4 33101258 33101632 -169226715 + MSTD LTR MaLR 1 396 0 900 238 51 28 chr4 33101632 33101796 -169226551 - MER20 DNA MER1_type -46 173 1 1698 186 4 0 chr4 33101917 33102196 -169226151 + AluJo SINE Alu 1 280 -32 180 77 0 0 chr4 33102196 33102222 -169226125 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 22 0 0 0 chr4 33103338 33103360 -169224987 + AT_rich Low_complexity Low_complexity 1 22 0 198 313 30 15 chr4 33104709 33104776 -169223571 + MIR SINE MIR 75 142 -66 325 317 30 10 chr4 33105520 33105621 -169222726 - MIR3 SINE MIR -12 196 94 228 35 0 0 chr4 33106272 33106301 -169222046 + (TG)n Simple_repeat Simple_repeat 2 30 0 268 208 0 0 chr4 33106685 33106733 -169221614 + MIR SINE MIR 91 138 -124 207 0 0 0 chr4 33107957 33107980 -169220367 + (A)n Simple_repeat Simple_repeat 1 23 0 340 275 31 25 chr4 33108056 33108216 -169220131 + MER117 DNA MER1_type 1 161 -36 213 39 0 0 chr4 33108957 33108983 -169219364 + (A)n Simple_repeat Simple_repeat 1 26 0 389 270 63 21 chr4 33109055 33109244 -169219103 + MER117 DNA MER1_type 1 197 0 262 288 86 26 chr4 33109264 33109398 -169218949 + MIR SINE MIR 3 143 -65 27 0 0 0 chr4 33109684 33109711 -169218636 + AT_rich Low_complexity Low_complexity 1 27 0 706 161 50 68 chr4 33110328 33110489 -169217858 - MER20 DNA MER1_type -7 212 55 28 0 0 0 chr4 33112820 33112848 -169215499 + AT_rich Low_complexity Low_complexity 1 28 0 208 279 0 0 chr4 33113713 33113756 -169214591 - MIR3 SINE MIR -52 156 114 2258 116 0 0 chr4 33115555 33115865 -169212482 - AluSx SINE Alu -2 310 1 432 279 116 43 chr4 33116153 33116384 -169211963 - MIR SINE MIR 0 262 13 201 253 69 35 chr4 33117638 33117725 -169210622 + MIR3 SINE MIR 119 208 0 301 287 10 40 chr4 33118139 33118240 -169210107 - MIR3 SINE MIR -23 185 88 942 207 74 0 chr4 33119516 33119719 -169208628 + MER20 DNA MER1_type 2 219 0 333 0 0 0 chr4 33120644 33120681 -169207666 + (CA)n Simple_repeat Simple_repeat 2 38 0 529 317 127 53 chr4 33120994 33121716 -169206631 + L3 LINE CR1 753 1528 -49 1015 269 145 31 chr4 33172246 33172730 -169155617 + MLT1H LTR MaLR 3 541 -8 360 0 0 0 chr4 33173137 33173177 -169155170 + (T)n Simple_repeat Simple_repeat 1 40 0 21 0 0 0 chr4 33173302 33173323 -169155024 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr4 33173412 33173435 -169154912 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr4 33173876 33173902 -169154445 + AT_rich Low_complexity Low_complexity 1 26 0 360 0 0 0 chr4 33174032 33174072 -169154275 + (T)n Simple_repeat Simple_repeat 1 40 0 192 298 48 0 chr4 33174541 33174625 -169153722 - MIR SINE MIR -50 212 125 2686 16 0 10 chr4 33176415 33176727 -169151620 - AluYb8 SINE Alu -9 309 1 24 0 0 0 chr4 33177682 33177706 -169150641 + AT_rich Low_complexity Low_complexity 1 24 0 1908 125 0 0 chr4 33178259 33178531 -169149816 + AluY SINE Alu 24 295 -16 253 286 118 17 chr4 33179596 33179715 -169148632 + MIR SINE MIR 121 251 -11 21 36 0 0 chr4 33180072 33180100 -169148247 + AT_rich Low_complexity Low_complexity 1 28 0 209 200 33 0 chr4 33181414 33181474 -169146873 + (TATG)n Simple_repeat Simple_repeat 3 64 0 2209 101 7 0 chr4 33181755 33182062 -169146285 + AluSp SINE Alu 1 309 -4 230 177 0 48 chr4 33182520 33182582 -169145765 + A-rich Low_complexity Low_complexity 3 61 0 279 334 87 49 chr4 33182585 33182768 -169145579 + MIR SINE MIR 28 214 -48 875 311 80 27 chr4 33182846 33183258 -169145089 + L2 LINE L2 2879 3312 -1 1508 204 32 55 chr4 33184577 33184979 -169143368 + MSTD LTR MaLR 4 396 0 21 36 0 0 chr4 33186822 33186850 -169141497 + AT_rich Low_complexity Low_complexity 1 28 0 277 232 9 89 chr4 33187228 33187340 -169141007 + MLT1H LTR MaLR 4 106 -443 1208 226 84 42 chr4 33187347 33187776 -169140571 - MLT1C LTR MaLR -16 451 5 577 267 87 103 chr4 33187780 33188039 -169140308 + MLT1H LTR MaLR 111 362 -187 1958 127 65 39 chr4 33188039 33188394 -169139953 + THE1B LTR MaLR 1 364 0 577 267 87 103 chr4 33188394 33188580 -169139767 + MLT1H LTR MaLR 362 549 0 1296 139 0 14 chr4 33189216 33189425 -169138922 + AluSg/x SINE Alu 105 310 -2 242 133 67 50 chr4 33189562 33189622 -169138725 - MLT1H LTR MaLR -202 340 280 1813 64 0 0 chr4 33189716 33189951 -169138396 - L1PA5 LINE L1 0 6154 5920 280 248 0 115 chr4 33189952 33190009 -169138338 - MLT1H LTR MaLR -285 264 225 1784 146 42 73 chr4 33190009 33190394 -169137953 - THE1C LTR MaLR 0 375 3 280 248 0 115 chr4 33190394 33190449 -169137898 - MLT1H LTR MaLR -324 225 165 201 226 0 0 chr4 33190897 33190950 -169137397 + (TG)n Simple_repeat Simple_repeat 2 54 0 1277 228 65 20 chr4 33191835 33192186 -169136161 - MLT1D LTR MaLR 0 505 139 25 65 0 0 chr4 33192321 33192367 -169135980 + AT_rich Low_complexity Low_complexity 1 46 0 1508 112 10 0 chr4 33192577 33192782 -169135565 - AluSc SINE Alu -20 289 83 302 169 26 78 chr4 33193345 33193422 -169134925 + MLT1L LTR MaLR 156 228 -387 661 259 45 77 chr4 33193426 33193868 -169134479 - MER57A LTR ERV1 -4 399 1 393 241 63 38 chr4 33193987 33194145 -169134202 + MLT1L LTR MaLR 421 582 -33 808 268 50 71 chr4 33194267 33194607 -169133740 - MLT1A2 LTR MaLR -41 333 1 853 241 113 43 chr4 33194722 33194979 -169133368 - AluJo SINE Alu -35 277 3 26 30 0 0 chr4 33195074 33195107 -169133240 + AT_rich Low_complexity Low_complexity 1 33 0 238 307 10 30 chr4 33195207 33195308 -169133039 - L1ME LINE L1 -394 5727 5629 430 226 33 122 chr4 33195834 33196015 -169132332 - MER91B DNA MER1_type -6 184 20 219 263 0 0 chr4 33196105 33196185 -169132162 + (TA)n Simple_repeat Simple_repeat 1 80 0 225 0 0 0 chr4 33196244 33196269 -169132078 + (CA)n Simple_repeat Simple_repeat 2 26 0 318 147 0 0 chr4 33196474 33196542 -169131805 + (TC)n Simple_repeat Simple_repeat 1 68 0 342 0 0 0 chr4 33196542 33196580 -169131767 + (CA)n Simple_repeat Simple_repeat 1 38 0 193 94 62 16 chr4 33197066 33197130 -169131217 + (TA)n Simple_repeat Simple_repeat 2 68 0 23 33 0 0 chr4 33197141 33197171 -169131176 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr4 33197202 33197225 -169131122 + AT_rich Low_complexity Low_complexity 1 23 0 1656 95 50 0 chr4 33197403 33197625 -169130722 + AluSc SINE Alu 59 291 -18 1496 199 36 0 chr4 33197625 33197906 -169130441 - Tigger3(Golem) DNA MER2_type -2738 291 1 593 238 0 16 chr4 33197920 33198046 -169130301 - FLAM_A SINE Alu -9 124 1 444 301 81 17 chr4 33199161 33199397 -169128950 - MER112 DNA MER1_type -4 256 6 418 243 71 62 chr4 33200494 33200704 -169127643 + MLT1J1 LTR MaLR 1 212 -234 252 329 168 31 chr4 33200926 33201087 -169127260 - MIR SINE MIR -58 204 22 585 302 40 22 chr4 33201478 33201700 -169126647 + MIR SINE MIR 31 256 -6 2300 73 0 7 chr4 33202425 33202726 -169125621 + AluY SINE Alu 1 299 -12 243 250 30 10 chr4 33202821 33202921 -169125426 + (TA)n Simple_repeat Simple_repeat 2 103 0 191 382 91 30 chr4 33204512 33204711 -169123636 + L2 LINE L2 2731 2941 -373 2049 104 0 39 chr4 33205621 33205928 -169122419 - AluSq SINE Alu -18 295 1 2549 133 21 25 chr4 33206037 33206473 -169121874 - Tigger2a DNA MER2_type 0 434 1 340 262 11 55 chr4 33206473 33206687 -169121660 + MER112 DNA MER1_type 47 248 -12 2010 192 39 15 chr4 33206836 33207248 -169121099 - MER61C LTR ERV1 0 434 13 369 121 0 0 chr4 33207532 33207590 -169120757 + L1MA2 LINE L1 6233 6290 -14 2167 126 0 7 chr4 33207620 33207922 -169120425 + AluSx SINE Alu 1 300 -12 28 0 0 0 chr4 33208370 33208398 -169119949 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr4 33208417 33208438 -169119909 + AT_rich Low_complexity Low_complexity 1 21 0 369 307 135 43 chr4 33208504 33208830 -169119517 + L2 LINE L2 2619 2974 -340 629 279 17 6 chr4 33209270 33209449 -169118898 - MIR SINE MIR -80 182 2 25 0 0 0 chr4 33210059 33210084 -169118263 + AT_rich Low_complexity Low_complexity 1 25 0 25 0 0 0 chr4 33212072 33212097 -169116250 + AT_rich Low_complexity Low_complexity 1 25 0 306 0 0 0 chr4 33212791 33212825 -169115522 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 21 0 0 0 chr4 33214122 33214143 -169114204 + AT_rich Low_complexity Low_complexity 1 21 0 206 163 0 20 chr4 33214623 33214672 -169113675 + T-rich Low_complexity Low_complexity 4 51 0 1211 207 28 38 chr4 33214674 33214964 -169113383 - AluJo SINE Alu -24 288 2 22 56 0 0 chr4 33216322 33216358 -169111989 + AT_rich Low_complexity Low_complexity 1 36 0 24 53 0 0 chr4 33216761 33216799 -169111548 + AT_rich Low_complexity Low_complexity 1 38 0 2349 97 0 0 chr4 33216806 33217104 -169111243 - AluSc SINE Alu -11 298 1 565 198 9 0 chr4 33217319 33217430 -169110917 - MER58 DNA MER1_type 0 2420 2309 393 301 9 9 chr4 33217435 33217548 -169110799 - MER58 DNA MER1_type -2303 117 5 273 208 292 0 chr4 33217627 33217723 -169110624 - MER94 DNA DNA -10 124 1 210 330 44 11 chr4 33220265 33220356 -169107991 - L2 LINE L2 -37 3235 3142 2919 112 12 0 chr4 33220978 33221381 -169106966 + MLT2A2 LTR ERVL 1 408 -45 277 256 0 0 chr4 33221392 33221474 -169106873 - L1MC4 LINE L1 -1347 6695 6614 327 253 0 0 chr4 33221474 33221569 -169106778 + (TA)n Simple_repeat Simple_repeat 2 96 0 274 192 0 0 chr4 33221586 33221638 -169106709 + MLT2A1 LTR ERVL 391 442 -2 1541 220 46 29 chr4 33221644 33221994 -169106353 - MLT1A1 LTR MaLR -3 362 7 288 136 17 17 chr4 33222120 33222179 -169106168 - MER3 DNA MER1_type -8 201 143 228 162 0 59 chr4 33223654 33223722 -169104625 + A-rich Low_complexity Low_complexity 3 66 0 29 47 0 0 chr4 33224973 33225016 -169103331 + AT_rich Low_complexity Low_complexity 1 43 0 740 268 64 5 chr4 33225042 33225262 -169103085 - MIR SINE MIR -26 236 4 297 339 0 34 chr4 33225906 33226024 -169102323 + L2 LINE L2 3142 3255 -17 216 0 0 0 chr4 33227437 33227461 -169100886 + (TG)n Simple_repeat Simple_repeat 2 25 0 295 130 0 0 chr4 33227513 33227559 -169100788 + MADE1 DNA Mariner 35 80 0 530 70 0 0 chr4 33227563 33227634 -169100713 + MADE1 DNA Mariner 10 80 0 439 321 59 5 chr4 33227868 33228076 -169100271 + MIR SINE MIR 31 260 -2 214 365 24 35 chr4 33228808 33228978 -169099369 - MER5A DNA MER1_type -5 184 17 * 320 299 39 32 chr4 33228826 33228980 -169099367 + MER5A DNA MER1_type 35 189 0 218 246 88 0 chr4 33229119 33229176 -169099171 + MIR SINE MIR 85 146 -62 578 118 0 0 chr4 33229919 33230004 -169098343 + L1MC1 LINE L1 6236 6320 -13 186 43 0 0 chr4 33230732 33230755 -169097592 + (TG)n Simple_repeat Simple_repeat 2 24 0 27 0 0 0 chr4 33231521 33231548 -169096799 + AT_rich Low_complexity Low_complexity 1 27 0 195 386 28 28 chr4 33234684 33234860 -169093487 - L2 LINE L2 -198 3074 2899 448 316 93 25 chr4 33235478 33235793 -169092554 + L2 LINE L2 2692 3032 -281 1949 119 26 17 chr4 33236196 33236498 -169091849 + AluSx SINE Alu 1 305 -7 239 226 12 48 chr4 33238445 33238529 -169089818 + L1 LINE L1 3836 3916 -2230 2428 84 7 0 chr4 33238819 33239129 -169089218 + AluSp SINE Alu 1 312 -1 871 214 6 0 chr4 33239986 33240145 -169088202 - FRAM SINE Alu -24 152 1 631 149 14 78 chr4 33240168 33240309 -169088038 - FLAM_C SINE Alu 0 143 12 225 0 0 0 chr4 33240330 33240355 -169087992 + (T)n Simple_repeat Simple_repeat 1 25 0 549 268 72 66 chr4 33240356 33240991 -169087356 + L1ME3 LINE L1 4595 5233 -913 495 0 0 0 chr4 33241000 33241055 -169087292 + (TA)n Simple_repeat Simple_repeat 2 56 0 706 302 87 54 chr4 33241094 33241554 -169086793 + L1ME3 LINE L1 5355 5829 -333 2063 122 42 33 chr4 33242443 33242804 -169085543 + THE1B LTR MaLR 1 364 0 2119 102 0 52 chr4 33243452 33243776 -169084571 - AluSg SINE Alu -3 307 1 1852 141 15 41 chr4 33244293 33244510 -169083837 + L1PB3 LINE L1 5820 6026 -128 2452 63 0 22 chr4 33244510 33244828 -169083519 + AluY SINE Alu 1 311 0 1852 141 15 41 chr4 33244828 33244951 -169083396 + L1PB3 LINE L1 6026 6151 -3 1037 165 43 57 chr4 33246131 33246361 -169081986 - MSTB LTR MaLR 0 426 200 216 191 24 0 chr4 33246362 33246404 -169081943 + GA-rich Low_complexity Low_complexity 3 45 0 894 78 0 0 chr4 33246506 33246621 -169081726 - THE1-int LTR MaLR -80 1500 1386 1357 130 43 26 chr4 33246624 33246789 -169081558 - MSTB LTR MaLR -191 235 63 5221 72 12 1 chr4 33246789 33247473 -169080874 - LTR8 LTR ERV1 0 691 1 1357 130 43 26 chr4 33247473 33247538 -169080809 - MSTB LTR MaLR -363 63 1 229 200 20 20 chr4 33247671 33247721 -169080626 + CT-rich Low_complexity Low_complexity 2 51 0 583 297 77 5 chr4 33249753 33249962 -169078385 - MIR SINE MIR -38 224 1 22 35 0 0 chr4 33251251 33251280 -169077067 + AT_rich Low_complexity Low_complexity 1 29 0 1641 104 16 0 chr4 33252115 33252366 -169075981 - L1MA2 LINE L1 0 6304 6050 25 75 0 0 chr4 33253220 33253273 -169075074 + AT_rich Low_complexity Low_complexity 1 53 0 243 245 0 0 chr4 33254288 33254341 -169074006 - L3 LINE CR1 -2 1575 1523 23 92 0 0 chr4 33257384 33257449 -169070898 + AT_rich Low_complexity Low_complexity 1 65 0 210 238 16 0 chr4 33258747 33258810 -169069537 + (TG)n Simple_repeat Simple_repeat 1 64 0 2099 105 11 0 chr4 33259016 33259384 -169068963 + AluSx SINE Alu 3 373 0 492 18 0 0 chr4 33259421 33259478 -169068869 + (TA)n Simple_repeat Simple_repeat 1 57 0 243 315 56 0 chr4 33260376 33260465 -169067882 + MIR SINE MIR 15 108 -154 1714 193 80 3 chr4 33260605 33260967 -169067380 - MLT1B LTR MaLR 0 390 1 376 295 118 8 chr4 33261411 33261616 -169066731 - MIR SINE MIR -14 248 14 279 173 0 0 chr4 33261814 33261866 -169066481 + GA-rich Low_complexity Low_complexity 3 54 0 199 357 147 35 chr4 33262394 33262537 -169065810 - MIR3 SINE MIR -15 193 35 638 116 4 2 chr4 33264280 33264529 -169063818 + AluSq SINE Alu 1 299 -14 180 0 0 0 chr4 33265111 33265131 -169063216 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 1872 128 20 10 chr4 33265168 33265466 -169062881 - AluSx SINE Alu -1 311 11 238 341 111 46 chr4 33265708 33266121 -169062226 + L2 LINE L2 2828 3267 -5 398 319 63 31 chr4 33267792 33267983 -169060364 - MIR SINE MIR -36 226 30 2355 94 0 0 chr4 33268356 33268653 -169059694 + AluY SINE Alu 1 297 -14 1811 124 0 8 chr4 33269027 33269293 -169059054 - AluSx SINE Alu -9 303 40 331 300 247 0 chr4 33269582 33269772 -169058575 + MIR SINE MIR 25 261 -1 23 0 0 0 chr4 33270155 33270178 -169058169 + AT_rich Low_complexity Low_complexity 1 23 0 2096 124 3 3 chr4 33271550 33271856 -169056491 - AluSx SINE Alu -6 306 1 408 55 0 0 chr4 33272336 33272391 -169055956 + (CA)n Simple_repeat Simple_repeat 1 55 0 292 234 0 26 chr4 33272394 33272471 -169055876 + GA-rich Low_complexity Low_complexity 3 77 0 23 0 0 0 chr4 33273046 33273069 -169055278 + AT_rich Low_complexity Low_complexity 1 23 0 1776 77 18 154 chr4 33274567 33274904 -169053443 - AluSp SINE Alu -12 291 1 184 255 64 0 chr4 33275809 33275856 -169052491 + L2 LINE L2 3219 3268 -4 180 152 0 0 chr4 33276260 33276293 -169052054 + A-rich Low_complexity Low_complexity 1 33 0 3897 159 18 26 chr4 33277136 33277852 -169050495 - MER50 LTR ERV1 -24 710 1 403 265 11 54 chr4 33277913 33278098 -169050249 + CT-rich Low_complexity Low_complexity 4 180 0 234 217 0 0 chr4 33278111 33278180 -169050167 + T-rich Low_complexity Low_complexity 1 69 0 25 65 0 0 chr4 33279143 33279189 -169049158 + AT_rich Low_complexity Low_complexity 1 46 0 27 0 0 0 chr4 33280723 33280750 -169047597 + AT_rich Low_complexity Low_complexity 1 27 0 2074 199 72 94 chr4 33281098 33281942 -169046405 - LTR1B LTR ERV1 0 826 1 337 302 249 0 chr4 33281961 33282150 -169046197 - MIR SINE MIR -13 249 14 2057 203 17 19 chr4 33283211 33283630 -169044717 + MER47B DNA MER2_type 1 418 0 651 267 14 0 chr4 33283659 33283805 -169044542 + MIR SINE MIR 4 151 -111 1628 127 15 112 chr4 33283849 33284180 -169044167 - AluSx SINE Alu -1 301 3 240 278 14 0 chr4 33285639 33285711 -169042636 + MER112 DNA MER1_type 2 74 -186 242 244 73 0 chr4 33285735 33285817 -169042530 - L1MC4 LINE L1 -1341 6701 6614 * 269 182 32 13 chr4 33285741 33285835 -169042512 + L1MC4 LINE L1 1995 6983 -1339 219 254 0 0 chr4 33285835 33285898 -169042449 + (CATA)n Simple_repeat Simple_repeat 2 64 0 23 54 0 0 chr4 33287329 33287366 -169040981 + AT_rich Low_complexity Low_complexity 1 37 0 1906 109 18 18 chr4 33287366 33287640 -169040707 - AluSx SINE Alu -28 284 11 1081 260 78 27 chr4 33288246 33288619 -169039728 - MLT1D LTR MaLR 0 505 114 400 198 12 23 chr4 33288747 33288833 -169039514 - MLT1D LTR MaLR -418 87 3 2197 121 0 0 chr4 33291961 33292268 -169036079 + AluSc SINE Alu 1 307 -2 701 281 212 40 chr4 33292374 33292823 -169035524 - MLT1H LTR MaLR -2 547 22 752 227 93 53 chr4 33293364 33293685 -169034662 - MER46C DNA MER2_type -4 334 1 790 317 46 8 chr4 33293689 33293929 -169034418 - MIR SINE MIR -6 256 8 530 242 112 40 chr4 33293992 33294215 -169034132 - MIR SINE MIR -4 258 20 2006 113 3 3 chr4 33295082 33295410 -169032937 + AluSx SINE Alu 1 328 0 1872 136 3 18 chr4 33296499 33296785 -169031562 + AluSx SINE Alu 29 310 -2 209 343 150 21 chr4 33297122 33297262 -169031085 + L3b LINE CR1 1285 1442 -141 210 71 0 0 chr4 33298390 33298418 -169029929 + (A)n Simple_repeat Simple_repeat 1 28 0 231 88 0 0 chr4 33300894 33300928 -169027419 + (A)n Simple_repeat Simple_repeat 1 34 0 1075 217 31 11 chr4 33301692 33302183 -169026164 - MER34 LTR ERV1 -3 539 12 635 84 11 0 chr4 33302206 33302301 -169026046 + (TCTA)n Simple_repeat Simple_repeat 4 99 0 1433 52 0 0 chr4 33302301 33302475 -169025872 - L1PA7 LINE L1 -15 6139 5966 2027 97 10 55 chr4 33302704 33303015 -169025332 + AluSg SINE Alu 1 297 -13 230 377 142 9 chr4 33304995 33305101 -169023246 - L2 LINE L2 0 3272 3153 216 179 0 0 chr4 33305108 33305147 -169023200 + (TG)n Simple_repeat Simple_repeat 2 40 0 1492 167 161 23 chr4 33305301 33305649 -169022698 + MSTD LTR MaLR 1 396 0 211 322 61 70 chr4 33306065 33306180 -169022167 - L2 LINE L2 -1 3312 3199 2016 126 13 7 chr4 33306212 33306514 -169021833 - AluSx SINE Alu -8 304 1 780 149 6 31 chr4 33306516 33306677 -169021670 - L1MC3 LINE L1 -7 7778 7622 336 191 12 95 chr4 33306721 33306805 -169021542 - MLT2B3 LTR ERVL -268 286 210 1983 166 51 31 chr4 33306805 33307352 -169020995 - MLT2A2 LTR ERVL 0 554 1 1064 184 75 0 chr4 33307352 33307551 -169020796 - MLT2B3 LTR ERVL -340 214 1 3002 211 41 19 chr4 33307551 33308007 -169020340 - L1MC3 LINE L1 -163 7622 7142 2236 101 0 0 chr4 33308007 33308295 -169020052 - AluSg SINE Alu -22 288 1 3002 211 41 19 chr4 33308295 33308572 -169019775 - L1MC3 LINE L1 -643 7142 6873 2130 138 3 6 chr4 33308696 33309008 -169019339 - AluSx SINE Alu -1 311 1 435 38 0 0 chr4 33310093 33310146 -169018201 + (TC)n Simple_repeat Simple_repeat 2 54 0 27 0 0 0 chr4 33311040 33311067 -169017280 + AT_rich Low_complexity Low_complexity 1 27 0 198 0 0 0 chr4 33311067 33311089 -169017258 + (TG)n Simple_repeat Simple_repeat 1 22 0 21 0 0 0 chr4 33311139 33311160 -169017187 + AT_rich Low_complexity Low_complexity 1 21 0 272 182 11 0 chr4 33311243 33311331 -169017016 + (CA)n Simple_repeat Simple_repeat 1 89 0 1069 180 10 10 chr4 33311372 33311578 -169016769 - MER46A DNA MER2_type -29 207 2 3451 124 42 64 chr4 33312171 33312347 -169016000 + Tigger3b DNA MER2_type 1 179 -2849 1996 123 10 7 chr4 33312347 33312640 -169015707 - AluSx SINE Alu -18 294 1 3451 124 42 64 chr4 33312640 33313155 -169015192 + Tigger3b DNA MER2_type 179 677 -554 5515 131 26 4 chr4 33313200 33314646 -169013701 - L1PA11 LINE L1 0 6174 4699 2873 113 38 47 chr4 33314646 33314764 -169013583 + Tigger3b DNA MER2_type 660 778 -2251 1661 147 0 89 chr4 33314764 33315078 -169013269 - AluSx SINE Alu -26 286 1 2873 113 38 47 chr4 33315078 33315510 -169012837 + Tigger3b DNA MER2_type 778 1205 -27 332 326 90 15 chr4 33315949 33316283 -169012064 - MARNA DNA Mariner -155 431 73 2286 103 3 6 chr4 33316488 33316799 -169011548 - AluY SINE Alu -1 310 1 29 28 0 0 chr4 33316856 33316892 -169011455 + AT_rich Low_complexity Low_complexity 1 36 0 603 205 54 12 chr4 33317018 33317184 -169011163 - MER96B DNA MER1_type? -1 416 244 2358 83 0 13 chr4 33317383 33317696 -169010651 - AluY SINE Alu -2 309 1 456 367 57 16 chr4 33318504 33318752 -169009595 + MIR SINE MIR 1 258 -4 21 0 0 0 chr4 33319150 33319171 -169009176 + AT_rich Low_complexity Low_complexity 1 21 0 273 114 0 0 chr4 33319467 33319511 -169008836 - MADE1 DNA Mariner 0 80 37 388 288 0 30 chr4 33319575 33319707 -169008640 - MLT1L LTR MaLR -129 486 359 294 29 0 0 chr4 33319989 33320024 -169008323 + (CA)n Simple_repeat Simple_repeat 2 36 0 2201 95 3 7 chr4 33321008 33321303 -169007044 + AluSg SINE Alu 1 294 -16 1913 110 49 36 chr4 33322535 33322843 -169005504 + AluSp SINE Alu 1 312 -1 1880 134 58 15 chr4 33323317 33323646 -169004701 - MER61A LTR ERV1 0 343 1 4899 149 120 27 chr4 33323867 33325276 -169003071 - pTR5 LTR ERV1 0 2438 741 275 330 141 19 chr4 33325592 33326074 -169002273 + HAL1b LINE L1 252 792 -556 2298 132 31 8 chr4 33326426 33326782 -169001565 - THE1B LTR MaLR 0 364 1 349 351 67 14 chr4 33326857 33327065 -169001282 - L3 LINE CR1 -129 1448 1230 1840 132 38 14 chr4 33328572 33328861 -168999486 - AluSx SINE Alu -16 296 1 22 0 0 0 chr4 33329341 33329363 -168998984 + AT_rich Low_complexity Low_complexity 1 22 0 270 223 36 57 chr4 33329582 33329717 -168998630 + MLT1J2 LTR MaLR 52 144 -306 26 93 0 0 chr4 33331194 33331269 -168997078 + AT_rich Low_complexity Low_complexity 1 75 0 219 139 0 0 chr4 33332082 33332118 -168996229 + (A)n Simple_repeat Simple_repeat 1 36 0 2676 94 3 0 chr4 33332602 33332963 -168995384 + THE1B LTR MaLR 1 362 -2 2060 118 12 43 chr4 33335128 33335450 -168992897 - AluSx SINE Alu 0 312 1 670 269 65 62 chr4 33335583 33335681 -168992666 + MLT1F LTR MaLR 1 97 -445 2114 136 0 10 chr4 33335681 33335990 -168992357 + AluSx SINE Alu 1 306 -6 670 269 65 62 chr4 33335990 33336229 -168992118 + MLT1F LTR MaLR 97 339 -203 812 236 18 84 chr4 33336245 33336520 -168991827 + MLT1D-int LTR MaLR 1109 1365 -6 1065 191 96 71 chr4 33336553 33336877 -168991470 + MLT1D LTR MaLR 28 359 -146 22 35 0 0 chr4 33336921 33336950 -168991397 + AT_rich Low_complexity Low_complexity 1 29 0 500 274 10 0 chr4 33337145 33337341 -168991006 - L1ME3 LINE L1 0 6162 5965 639 259 0 6 chr4 33337478 33337640 -168990707 - L1ME3 LINE L1 -592 5572 5412 2687 131 17 0 chr4 33337642 33338061 -168990286 + MSTB1 LTR MaLR 1 426 -6 1464 273 64 27 chr4 33338067 33338091 -168990256 - L1ME3 LINE L1 -756 5414 5392 2272 99 61 32 chr4 33338091 33338156 -168990191 - THE1A LTR MaLR 0 355 293 2056 107 7 0 chr4 33338156 33338427 -168989920 + AluSq SINE Alu 41 313 0 2272 99 61 32 chr4 33338427 33338706 -168989641 - THE1A LTR MaLR -62 293 1 10427 113 34 0 chr4 33338706 33340234 -168988113 - THE1A-int LTR MaLR 0 1580 1 2387 106 23 3 chr4 33340234 33340582 -168987765 - THE1A LTR MaLR 0 355 1 1464 273 64 27 chr4 33340582 33341379 -168986968 - L1ME3 LINE L1 -777 5393 4562 711 283 49 43 chr4 33341380 33341435 -168986912 - L1ME3 LINE L1 -1617 4529 4476 4642 74 44 61 chr4 33341435 33342135 -168986212 + LTR12 LTR ERV1 1 688 0 711 283 49 43 chr4 33342135 33342585 -168985762 - L1ME3 LINE L1 -1670 4476 4021 304 218 0 76 chr4 33342579 33342695 -168985652 - L1MA7 LINE L1 -213 6083 5983 * 27 0 0 0 chr4 33342931 33342958 -168985389 + AT_rich Low_complexity Low_complexity 1 27 0 2368 78 3 0 chr4 33343120 33343414 -168984933 + AluSp SINE Alu 1 295 -18 246 295 0 0 chr4 33343442 33343537 -168984810 + L1MC4 LINE L1 6614 6708 -1334 292 264 13 3 chr4 33343632 33343729 -168984618 - L1MA7 LINE L1 -400 5770 5685 288 268 299 0 chr4 33443823 33443950 -168884397 + ERVL LTR ERVL 4161 4325 -1439 252 0 0 0 chr4 33445200 33445228 -168883119 + (TG)n Simple_repeat Simple_repeat 2 29 0 2788 16 0 0 chr4 33446677 33446988 -168881359 - AluYa5 SINE Alu 0 311 1 3388 98 6 0 chr4 33447508 33447988 -168880359 + L1PA7 LINE L1 5666 6148 -6 1057 79 0 0 chr4 33448021 33448160 -168880187 - AluY SINE Alu -15 296 158 410 262 8 16 chr4 33448164 33448286 -168880061 + L1M4 LINE L1 4942 5062 -1084 874 258 39 35 chr4 33448373 33448820 -168879527 + MLT1G3 LTR MaLR 1 549 -46 252 0 0 0 chr4 33450737 33450765 -168877582 + (TG)n Simple_repeat Simple_repeat 2 29 0 2170 78 0 0 chr4 33450765 33451049 -168877298 - AluY SINE Alu -27 284 1 247 298 16 16 chr4 33451340 33451461 -168876886 + L1ME4a LINE L1 5979 6099 -22 1915 133 20 3 chr4 33451550 33451852 -168876495 - AluSx SINE Alu -5 307 1 279 329 37 24 chr4 33452019 33452265 -168876082 - HERVL LTR ERVL -1667 3987 3739 1108 274 74 6 chr4 33452288 33452653 -168875694 - HERVL LTR ERVL -3998 998 609 1032 319 56 12 chr4 33452742 33453224 -168875123 - HERVL LTR ERVL -4492 504 2 409 219 0 0 chr4 33453225 33453307 -168875040 - LTR16A LTR ERVL 0 450 369 593 296 22 6 chr4 33453380 33453559 -168874788 - LTR16A LTR ERVL -96 354 173 420 325 58 19 chr4 33453651 33453840 -168874507 - MLT1J2 LTR MaLR 0 450 254 633 238 34 0 chr4 33453840 33453987 -168874360 + MER3 DNA MER1_type 1 152 -57 205 200 0 22 chr4 33453997 33454042 -168874305 + (TATATG)n Simple_repeat Simple_repeat 3 46 0 732 210 24 63 chr4 33454058 33454263 -168874084 - MLT1J1 LTR MaLR -241 205 9 928 169 22 0 chr4 33454295 33454479 -168873868 - L1MA10 LINE L1 -7 6327 6140 211 104 42 0 chr4 33454479 33454527 -168873820 + (TA)n Simple_repeat Simple_repeat 1 50 0 503 175 50 25 chr4 33454529 33454649 -168873698 - L1MA10 LINE L1 -192 5976 5854 1903 191 73 35 chr4 33454719 33455170 -168873177 + MLT1D LTR MaLR 31 498 -7 322 113 0 19 chr4 33455294 33455347 -168873000 - MLT2A2 LTR ERVL -2 451 400 211 86 0 99 chr4 33455348 33455429 -168872918 + (TA)n Simple_repeat Simple_repeat 2 74 0 967 140 57 0 chr4 33455429 33455586 -168872761 - MLT2A2 LTR ERVL -40 413 248 482 318 178 17 chr4 33455597 33455952 -168872395 + L2 LINE L2 1269 1680 -1634 32 57 0 0 chr4 33456285 33456338 -168872009 + AT_rich Low_complexity Low_complexity 1 53 0 613 246 58 77 chr4 33457021 33457117 -168871230 - MIR SINE MIR 0 262 166 903 231 59 0 chr4 33457117 33457320 -168871027 - MER20 DNA MER1_type -1 218 4 613 246 58 77 chr4 33457320 33457483 -168870864 - MIR SINE MIR -96 166 8 563 282 35 59 chr4 33457945 33458147 -168870200 + MIR SINE MIR 2 198 -64 655 199 0 11 chr4 33458185 33458366 -168869981 + (TA)n Simple_repeat Simple_repeat 2 180 0 305 280 11 11 chr4 33458374 33458467 -168869880 + L1MC4 LINE L1 6614 6706 -1336 205 300 14 0 chr4 33458527 33458597 -168869750 + (TA)n Simple_repeat Simple_repeat 2 72 0 9499 94 4 6 chr4 33458823 33460201 -168868146 + L1P LINE L1 4016 5391 -755 1053 269 10 46 chr4 33460318 33460708 -168867639 + L1MB7 LINE L1 1457 1832 -4552 3881 240 64 68 chr4 33460815 33462443 -168865904 + L1MB7 LINE L1 2978 4612 -1808 641 151 84 17 chr4 33462443 33462562 -168865785 + AluJb SINE Alu 4 130 -182 3881 240 64 68 chr4 33462562 33464275 -168864072 + L1MB7 LINE L1 4612 6405 -15 21 36 0 0 chr4 33464607 33464635 -168863712 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr4 33466053 33466079 -168862268 + AT_rich Low_complexity Low_complexity 1 26 0 276 215 139 0 chr4 33466525 33466604 -168861743 - MLT1B LTR MaLR -2 388 299 2103 193 76 70 chr4 33466954 33466993 -168861354 - MER92B LTR ERV1 0 636 599 464 95 27 0 chr4 33466993 33467067 -168861280 + MADE1 DNA Mariner 1 76 -4 2103 193 76 70 chr4 33467067 33467659 -168860688 - MER92B LTR ERV1 -37 599 1 25 0 0 0 chr4 33468200 33468225 -168860122 + AT_rich Low_complexity Low_complexity 1 25 0 2164 95 10 3 chr4 33468374 33468669 -168859678 - AluSx SINE Alu -15 297 1 1849 298 152 36 chr4 33468811 33469933 -168858414 + L2 LINE L2 1544 2796 -518 1600 236 43 9 chr4 33469975 33470415 -168857932 + L1 LINE L1 4102 4556 -1590 1198 195 37 142 chr4 33470415 33470872 -168857475 - MLT2B1 LTR ERVL 0 414 6 316 170 19 113 chr4 33470876 33470974 -168857373 + L1 LINE L1 4551 4640 -1506 759 142 57 0 chr4 33470974 33471115 -168857232 + L1MB3 LINE L1 6034 6182 -1 254 341 37 0 chr4 33471180 33471262 -168857085 + L2 LINE L2 2893 2977 -336 * 605 288 26 31 chr4 33471257 33471486 -168856861 + L2 LINE L2 3084 3311 -2 2181 112 48 31 chr4 33473239 33473597 -168854750 - THE1B LTR MaLR 0 364 1 3968 166 13 28 chr4 33473680 33474234 -168854113 + Tigger2 DNA MER2_type 2 544 -2174 1950 134 0 32 chr4 33474234 33474548 -168853799 - AluSg SINE Alu 0 310 7 3968 166 13 28 chr4 33474548 33474747 -168853600 + Tigger2 DNA MER2_type 544 744 -1974 1649 147 12 0 chr4 33474806 33475064 -168853283 + Tigger2 DNA MER2_type 2458 2718 0 303 28 0 0 chr4 33475250 33475286 -168853061 + (TC)n Simple_repeat Simple_repeat 1 36 0 1621 188 10 0 chr4 33475287 33475575 -168852772 - AluJo SINE Alu -21 291 1 339 25 0 0 chr4 33477107 33477147 -168851200 + (CA)n Simple_repeat Simple_repeat 2 41 0 1946 179 34 3 chr4 33477149 33477500 -168850847 - MLT1A1 LTR MaLR -3 362 1 239 186 31 21 chr4 33477508 33477605 -168850742 + (TATAA)n Simple_repeat Simple_repeat 5 102 0 234 186 0 0 chr4 33477611 33477654 -168850693 - L1MC4 LINE L1 -1342 6700 6658 243 204 19 19 chr4 33477654 33477708 -168850639 + Tigger5 DNA MER2_type 2 55 -2268 547 194 11 0 chr4 33477712 33477805 -168850542 + Tigger5 DNA MER2_type 2230 2323 0 33 25 0 0 chr4 33478403 33478443 -168849904 + AT_rich Low_complexity Low_complexity 1 40 0 2262 101 0 0 chr4 33478791 33479099 -168849248 + AluSq SINE Alu 1 308 -5 31 0 0 0 chr4 33480233 33480264 -168848083 + AT_rich Low_complexity Low_complexity 1 31 0 247 386 124 13 chr4 33481704 33481857 -168846490 - MIR3 SINE MIR -9 199 30 22 0 0 0 chr4 33481893 33481915 -168846432 + AT_rich Low_complexity Low_complexity 1 22 0 4175 163 65 48 chr4 33482368 33483253 -168845094 - MER4D LTR ERV1 0 903 3 2595 151 27 0 chr4 33483259 33483671 -168844676 - MSTA LTR MaLR 0 428 6 992 175 9 33 chr4 33484476 33484687 -168843660 - MLT2C1 LTR ERVL -191 206 1 1150 211 0 30 chr4 33486527 33486764 -168841583 - AluJb SINE Alu -1 311 82 5214 257 35 30 chr4 33488303 33488340 -168840007 + L1M4 LINE L1 1 36 -6506 2203 88 0 0 chr4 33488340 33488666 -168839681 + AluY SINE Alu 1 326 0 5214 257 35 30 chr4 33488666 33490291 -168838056 + L1M4 LINE L1 36 1673 -4869 1369 226 35 46 chr4 33490405 33490777 -168837570 + MLT1B LTR MaLR 21 388 -2 180 0 0 0 chr4 33491302 33491322 -168837025 + (TG)n Simple_repeat Simple_repeat 2 21 0 2198 107 3 10 chr4 33491614 33491913 -168836434 + AluSp SINE Alu 2 298 -15 21 36 0 0 chr4 33493329 33493357 -168834990 + AT_rich Low_complexity Low_complexity 1 28 0 775 133 70 0 chr4 33493455 33493598 -168834749 + MLT1B LTR MaLR 1 153 -237 565 179 49 154 chr4 33493592 33493838 -168834509 + MLT1B LTR MaLR 70 289 -101 * 881 323 77 35 chr4 33493827 33494001 -168834346 + MER45C DNA AcHobo 93 258 -695 4775 92 12 1 chr4 33494001 33494661 -168833686 - PABL_B LTR ERV1 0 667 1 881 323 77 35 chr4 33494661 33495021 -168833326 + MER45C DNA AcHobo 258 649 -304 269 324 10 20 chr4 33495074 33495176 -168833171 - MLT1I LTR MaLR -287 122 22 3783 138 19 3 chr4 33495179 33495804 -168832543 - MER41B LTR ERV1 0 635 1 848 266 78 20 chr4 33496005 33496249 -168832098 + Charlie1a DNA MER1_type 5 262 -1193 1546 192 135 83 chr4 33496302 33496888 -168831459 + MER21B LTR ERV1 40 776 -155 180 0 0 0 chr4 33496889 33496909 -168831438 + (AATTG)n Simple_repeat Simple_repeat 2 21 0 1079 266 34 90 chr4 33496926 33497414 -168830933 + MSTD-int LTR MaLR 1027 1490 -161 998 192 89 24 chr4 33497523 33497845 -168830502 + MSTD LTR MaLR 1 396 0 374 216 95 0 chr4 33497845 33497919 -168830428 + MER21B LTR ERV1 735 815 -48 4303 216 44 22 chr4 33497957 33499105 -168829242 + Charlie1a DNA MER1_type 282 1454 -1 261 237 7 151 chr4 33499272 33499411 -168828936 - L2 LINE L2 -43 3270 3152 180 0 0 0 chr4 33499933 33499953 -168828394 + (TTTA)n Simple_repeat Simple_repeat 4 23 0 210 167 24 0 chr4 33500234 33500276 -168828071 + (CA)n Simple_repeat Simple_repeat 2 44 0 2559 27 3 0 chr4 33500574 33500872 -168827475 + AluY SINE Alu 1 299 -12 680 333 91 25 chr4 33501207 33501649 -168826698 - L2 LINE L2 -38 3275 2805 225 319 55 55 chr4 33501657 33501839 -168826508 - L2 LINE L2 -402 2912 2731 22 35 0 0 chr4 33502018 33502047 -168826300 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 33502272 33502293 -168826054 + AT_rich Low_complexity Low_complexity 1 21 0 404 264 168 0 chr4 33503382 33503507 -168824840 - LTR67 LTR ERVL 0 557 412 1068 270 89 34 chr4 33503865 33504368 -168823979 + MLT1H LTR MaLR 12 542 -7 218 365 0 0 chr4 33505270 33505344 -168823003 + MIR SINE MIR 189 262 0 252 267 22 22 chr4 33505781 33505871 -168822476 + GA-rich Low_complexity Low_complexity 2 91 0 555 172 75 65 chr4 33505899 33506085 -168822262 - MER53 DNA DNA 0 189 2 225 348 11 0 chr4 33506251 33506343 -168822004 + L2 LINE L2 2305 2397 -917 * 409 287 102 92 chr4 33506317 33506620 -168821727 + L2 LINE L2 3006 3311 -2 205 371 37 71 chr4 33506617 33506997 -168821350 + L2 LINE L2 2362 2728 -586 * 243 125 0 0 chr4 33507049 33507089 -168821258 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 306 0 0 0 chr4 33507175 33507209 -168821138 + (TC)n Simple_repeat Simple_repeat 2 35 0 378 0 0 0 chr4 33507480 33507522 -168820825 + (TG)n Simple_repeat Simple_repeat 2 43 0 425 234 0 0 chr4 33507532 33507626 -168820721 + MER58C DNA MER1_type 27 120 -95 295 309 74 20 chr4 33507647 33507796 -168820551 - L1ME3A LINE L1 -287 5883 5727 484 250 47 16 chr4 33508013 33508141 -168820206 + L2 LINE L2 3182 3313 0 186 350 72 10 chr4 33508450 33508547 -168819800 + MIR3 SINE MIR 105 207 -1 2094 115 0 34 chr4 33508749 33509070 -168819277 + AluSg SINE Alu 1 310 0 25 0 0 0 chr4 33509151 33509176 -168819171 + AT_rich Low_complexity Low_complexity 1 25 0 2283 109 39 25 chr4 33510112 33510471 -168817876 - THE1B LTR MaLR 0 364 1 1058 232 5 14 chr4 33511358 33511578 -168816769 + MER58A DNA MER1_type 1 218 -6 4517 178 25 5 chr4 33511994 33512859 -168815488 - L1MC1 LINE L1 0 6333 5451 265 256 171 0 chr4 33513023 33513105 -168815242 + L2 LINE L2 3177 3272 0 2376 81 0 0 chr4 33514288 33514585 -168813762 - AluY SINE Alu -14 297 1 22 0 0 0 chr4 33516427 33516449 -168811898 + AT_rich Low_complexity Low_complexity 1 22 0 24 85 0 0 chr4 33516575 33516634 -168811713 + AT_rich Low_complexity Low_complexity 1 59 0 1279 131 39 9 chr4 33516803 33517092 -168811255 + THE1B LTR MaLR 1 364 0 646 161 51 106 chr4 33517169 33517370 -168810977 - MLT2D LTR ERVL 0 414 213 1319 328 100 47 chr4 33517786 33518638 -168809709 + L2 LINE L2 97 993 -2321 1047 305 41 26 chr4 33518679 33519141 -168809206 + L2 LINE L2 1893 2361 -953 2213 57 0 0 chr4 33519176 33519572 -168808775 + L1P3 LINE L1 5092 5487 -667 386 39 19 0 chr4 33520645 33520697 -168807650 + (TTTA)n Simple_repeat Simple_repeat 1 53 0 1297 188 4 47 chr4 33520704 33520981 -168807366 - AluJo SINE Alu -37 275 11 1756 37 0 0 chr4 33521662 33521876 -168806471 - L1PA4 LINE L1 -8 6147 5934 3694 206 43 13 chr4 33522129 33522803 -168805544 + L1M4 LINE L1 7 708 -5676 260 0 57 0 chr4 33522803 33522838 -168805509 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 3694 206 43 13 chr4 33522838 33522928 -168805419 + L1M4 LINE L1 708 794 -5590 5208 62 3 9 chr4 33522943 33523623 -168804724 - L1PA8 LINE L1 -9 6163 5488 1114 207 93 23 chr4 33523626 33524022 -168804325 + L1M4 LINE L1 5196 5619 -763 222 118 0 0 chr4 33525669 33525703 -168802644 + (AATTG)n Simple_repeat Simple_repeat 4 37 0 2178 72 36 0 chr4 33525996 33526273 -168802074 - AluSg SINE Alu -23 287 1 329 290 55 64 chr4 33526918 33527232 -168801115 - L1MEd LINE L1 -2525 3604 3266 249 346 4 26 chr4 33527247 33527475 -168800872 - L1MEd LINE L1 -4972 1147 925 453 214 58 0 chr4 33529777 33529880 -168798467 - MIR SINE MIR 0 262 154 256 327 53 44 chr4 33530579 33530692 -168797655 + MIR SINE MIR 1 114 -148 4087 182 19 24 chr4 33531273 33532070 -168796277 - MER54B LTR ERVL 0 793 1 2341 64 0 0 chr4 33532418 33532725 -168795622 - AluSg SINE Alu 0 307 1 2164 115 44 3 chr4 33533382 33533722 -168794625 - LTR57 LTR ERVL -57 354 1 21 36 0 0 chr4 33533833 33533861 -168794486 + AT_rich Low_complexity Low_complexity 1 28 0 222 136 0 0 chr4 33533976 33534020 -168794327 + (CA)n Simple_repeat Simple_repeat 2 45 0 979 180 0 6 chr4 33534422 33534600 -168793747 - MER6A DNA MER2_type 0 605 429 252 0 0 0 chr4 33534607 33534635 -168793712 + (CA)n Simple_repeat Simple_repeat 2 29 0 1122 187 5 29 chr4 33534636 33534845 -168793502 - MER6A DNA MER2_type -385 220 17 1994 136 0 0 chr4 33534934 33535228 -168793119 + AluSg SINE Alu 1 294 -16 217 410 78 0 chr4 33535444 33535610 -168792737 + L2 LINE L2 2178 2356 -958 242 272 22 65 chr4 33537478 33537529 -168790818 + L2 LINE L2 3190 3237 -76 2077 122 0 7 chr4 33537529 33537823 -168790524 - AluSx SINE Alu -20 292 1 242 272 22 65 chr4 33537823 33537863 -168790484 + L2 LINE L2 3237 3277 -36 231 254 0 48 chr4 33538312 33538375 -168789972 - L3 LINE CR1 -4 1573 1514 2170 90 0 4 chr4 33538857 33539179 -168789168 + AluSc SINE Alu 1 321 0 198 349 84 42 chr4 33540195 33540361 -168787986 + MIR SINE MIR 3 175 -87 279 316 78 31 chr4 33541222 33541415 -168786932 - MIR SINE MIR -8 254 53 22 0 0 0 chr4 33543461 33543483 -168784864 + AT_rich Low_complexity Low_complexity 1 22 0 2184 87 0 10 chr4 33544714 33545012 -168783335 - AluY SINE Alu 0 311 17 4130 195 35 20 chr4 33545021 33546757 -168781590 - L1MA7 LINE L1 -154 6137 4372 242 192 68 14 chr4 33546765 33546838 -168781509 - L1MC4 LINE L1 -1328 6714 6638 200 224 40 13 chr4 33548077 33548153 -168780194 + (TA)n Simple_repeat Simple_repeat 2 79 0 2411 239 54 8 chr4 33548209 33548930 -168779417 - Charlie5 DNA MER1_type -1826 786 33 2244 24 0 0 chr4 33549130 33549384 -168778963 - AluY SINE Alu -8 303 50 2135 110 3 26 chr4 33550383 33550692 -168777655 + AluSx SINE Alu 3 304 -8 393 246 173 52 chr4 33550848 33550953 -168777394 + MER58C DNA MER1_type 2 93 -2327 243 0 0 0 chr4 33550953 33550980 -168777367 + (GAAAA)n Simple_repeat Simple_repeat 2 28 0 393 246 173 52 chr4 33550980 33551065 -168777282 + MER58C DNA MER1_type 93 215 0 25 65 0 0 chr4 33551169 33551215 -168777132 + AT_rich Low_complexity Low_complexity 1 46 0 334 232 62 45 chr4 33552353 33552465 -168775882 + MER58C DNA MER1_type 102 215 0 23 33 0 0 chr4 33553837 33553867 -168774480 + AT_rich Low_complexity Low_complexity 1 30 0 857 113 0 0 chr4 33553867 33553982 -168774365 - AluSc SINE Alu -23 286 172 193 340 191 14 chr4 33554104 33554245 -168774102 - MIR SINE MIR -79 183 18 797 266 204 16 chr4 33554323 33554691 -168773656 - LTR16B LTR ERVL -3 461 25 340 241 15 0 chr4 33555380 33555517 -168772830 + (TA)n Simple_repeat Simple_repeat 2 140 0 28 0 0 0 chr4 33555736 33555764 -168772583 + AT_rich Low_complexity Low_complexity 1 28 0 1695 152 32 0 chr4 33555764 33556073 -168772274 - L1MA5A LINE L1 -2 6295 5977 1560 283 36 29 chr4 33558470 33559018 -168769329 + L1MCb LINE L1 9 560 -5485 2138 214 39 81 chr4 33559142 33559264 -168769083 + L1MCb LINE L1 570 696 -5868 2245 145 107 5 chr4 33559264 33559658 -168768689 + MER61C LTR ERV1 1 434 0 2138 214 39 81 chr4 33559658 33559830 -168768517 + L1MCb LINE L1 696 874 -5690 2061 109 14 0 chr4 33559830 33560114 -168768233 + AluSx SINE Alu 21 308 -4 2138 214 39 81 chr4 33560114 33561039 -168767308 + L1MCb LINE L1 874 1757 -4807 * 4844 183 47 6 chr4 33561008 33562086 -168766261 + L1MA7 LINE L1 5577 6698 -11 1547 241 54 22 chr4 33562085 33562782 -168765565 + L1MCb LINE L1 2044 2617 -3947 * 5402 211 59 9 chr4 33562782 33562907 -168765440 + L1MC3 LINE L1 6298 6415 -1370 2165 107 3 31 chr4 33562907 33563226 -168765121 + AluSq SINE Alu 1 310 -3 5402 211 59 9 chr4 33563226 33564526 -168763821 + L1MC3 LINE L1 6415 7783 -2 1696 154 55 0 chr4 33564538 33564831 -168763516 + AluSx SINE Alu 1 309 -3 24 53 0 0 chr4 33564889 33564927 -168763420 + AT_rich Low_complexity Low_complexity 1 38 0 2657 166 18 28 chr4 33565149 33565758 -168762589 + pTR5 LTR ERV1 743 1345 -1093 3826 135 19 130 chr4 33565773 33566697 -168761650 + LTR12 LTR ERV1 5 826 0 1892 130 13 3 chr4 33566787 33567086 -168761261 - AluSc SINE Alu -7 302 1 326 157 0 119 chr4 33567089 33567207 -168761140 - MSTB LTR MaLR -330 98 3 24 0 0 0 chr4 33567249 33567273 -168761074 + AT_rich Low_complexity Low_complexity 1 24 0 26 0 0 0 chr4 33568087 33568113 -168760234 + AT_rich Low_complexity Low_complexity 1 26 0 274 270 0 0 chr4 33568422 33568496 -168759851 + Charlie8 DNA MER1_type 71 144 -2273 2629 91 12 61 chr4 33568515 33568623 -168759724 + MER48 LTR ERV1 1 113 -274 2064 29 0 0 chr4 33568623 33568869 -168759478 + L1PA5 LINE L1 5909 6154 0 2629 91 12 61 chr4 33568869 33569167 -168759180 + MER48 LTR ERV1 113 387 0 36 23 0 0 chr4 33570584 33570627 -168757720 + AT_rich Low_complexity Low_complexity 1 43 0 312 379 21 21 chr4 33570980 33571120 -168757227 - L2 LINE L2 -5 3267 3128 428 232 96 57 chr4 33571187 33571364 -168756983 + MER63A DNA MER1_type 27 210 0 231 342 38 44 chr4 33571374 33571532 -168756815 - L2 LINE L2 -181 3091 2935 369 268 147 42 chr4 33573467 33573657 -168754690 - HAL1 LINE L1 -2 2505 2296 532 272 168 3 chr4 33573753 33574051 -168754296 - HAL1 LINE L1 -125 2382 2036 639 164 9 0 chr4 33574148 33574258 -168754089 - FLAM_A SINE Alu -20 122 12 757 222 76 0 chr4 33574327 33574525 -168753822 - HAL1 LINE L1 -726 1781 1569 21 0 0 0 chr4 33574819 33574840 -168753507 + AT_rich Low_complexity Low_complexity 1 21 0 3468 221 48 33 chr4 33575413 33576996 -168751351 - L1MB7 LINE L1 -6 6178 4564 1715 193 13 50 chr4 33576996 33577375 -168750972 + MLT1A1 LTR MaLR 1 365 0 3468 221 48 33 chr4 33577375 33577784 -168750563 - L1MB7 LINE L1 -1620 4564 4163 2881 127 16 2 chr4 33577805 33578255 -168750092 + Tigger4(Zombi) DNA MER2_type 2275 2730 -1 1392 263 113 60 chr4 33578356 33578571 -168749776 - L1MB7 LINE L1 -2085 4061 3859 378 0 0 0 chr4 33578571 33578613 -168749734 + (TG)n Simple_repeat Simple_repeat 2 43 0 1392 263 113 60 chr4 33578613 33579027 -168749320 - L1MB7 LINE L1 -2287 3859 3469 2159 164 33 28 chr4 33579027 33579453 -168748894 + MSTA LTR MaLR 1 428 0 1392 263 113 60 chr4 33579453 33579484 -168748863 - L1MB7 LINE L1 -2677 3469 3441 1543 146 20 20 chr4 33579484 33579730 -168748617 - AluSx SINE Alu -66 246 1 1392 263 113 60 chr4 33579730 33580022 -168748325 - L1MB7 LINE L1 -2705 3441 3056 1539 179 20 43 chr4 33580056 33580402 -168747945 + MER44D DNA MER2_type 1 608 -1 423 232 12 0 chr4 33580409 33580508 -168747839 - MIR SINE MIR -67 141 50 22 35 0 0 chr4 33581519 33581548 -168746799 + AT_rich Low_complexity Low_complexity 1 29 0 1649 112 12 0 chr4 33581777 33582036 -168746311 + L1MA5A LINE L1 6036 6297 0 1095 267 44 60 chr4 33582228 33582438 -168745909 - L2 LINE L2 -261 3052 2840 1499 176 52 144 chr4 33582438 33583036 -168745311 + MER67A LTR ERV1 1 543 0 1095 267 44 60 chr4 33583036 33583373 -168744974 - L2 LINE L2 -473 2840 2502 297 0 0 0 chr4 33584013 33584046 -168744301 + (TCCA)n Simple_repeat Simple_repeat 4 36 0 268 386 0 0 chr4 33584389 33584490 -168743857 + MIR SINE MIR 46 146 -62 226 220 22 132 chr4 33584857 33584948 -168743399 - L2 LINE L2 -18 3254 3174 30 0 0 0 chr4 33585372 33585402 -168742945 + AT_rich Low_complexity Low_complexity 1 30 0 718 266 43 96 chr4 33585905 33586372 -168741975 + LTR16A1 LTR ERVL 16 457 0 194 341 0 12 chr4 33586844 33586929 -168741418 + L3 LINE CR1 919 1002 -575 211 292 69 0 chr4 33587043 33587115 -168741232 + L3 LINE CR1 1197 1273 -304 1504 213 155 12 chr4 33587227 33587473 -168740874 + MLT1D LTR MaLR 6 215 -290 2075 99 7 3 chr4 33587473 33587801 -168740546 + AluSp SINE Alu 1 329 0 1504 213 155 12 chr4 33587801 33587985 -168740362 + MLT1D LTR MaLR 215 499 -6 4119 99 9 3 chr4 33588070 33588654 -168739693 - LTR8 LTR ERV1 -104 587 1 8789 85 17 23 chr4 33588654 33589339 -168739008 - HUERS-P1 LTR ERV1 0 6263 5575 3564 115 0 6 chr4 33589339 33589853 -168738494 + MER9 LTR ERVK 1 511 0 8789 85 17 23 chr4 33589853 33591151 -168737196 - HUERS-P1 LTR ERV1 -688 5575 4138 * 18034 96 27 43 chr4 33591141 33593928 -168734419 - HUERS-P1 LTR ERV1 -3522 2741 1 1063 90 14 0 chr4 33593928 33594072 -168734275 - LTR8 LTR ERV1 0 691 546 526 255 90 55 chr4 33594210 33594647 -168733700 + MER113 DNA MER1_type? 37 521 0 334 343 99 22 chr4 33594647 33594828 -168733519 + MIR SINE MIR 9 203 -59 285 275 99 0 chr4 33594999 33595090 -168733257 + L2 LINE L2 3190 3289 -24 1196 203 12 111 chr4 33595144 33595549 -168732798 - MLT1A1 LTR MaLR 0 365 1 1200 251 10 7 chr4 33595786 33596077 -168732270 - MER58B DNA MER1_type 0 341 50 1778 238 33 6 chr4 33596082 33596600 -168731747 - L1PB4 LINE L1 -813 5333 4802 * 2616 139 9 7 chr4 33596597 33597027 -168731320 + L1PB4 LINE L1 5345 5775 -381 191 0 75 25 chr4 33597032 33597072 -168731275 + (TA)n Simple_repeat Simple_repeat 2 43 0 370 135 71 35 chr4 33597107 33597277 -168731070 + (TA)n Simple_repeat Simple_repeat 2 177 0 230 229 0 49 chr4 33597306 33597367 -168730980 - L1PB4 LINE L1 -195 5961 5904 266 214 14 14 chr4 33597367 33597437 -168730910 + (TA)n Simple_repeat Simple_repeat 2 71 0 246 32 0 0 chr4 33597437 33597468 -168730879 + (CA)n Simple_repeat Simple_repeat 2 32 0 2030 160 20 0 chr4 33597468 33597824 -168730523 + L1PB4 LINE L1 5794 6156 0 298 388 70 5 chr4 33597824 33598038 -168730309 + L2 LINE L2 3039 3266 -47 243 345 9 35 chr4 33598404 33598520 -168729827 - MIR SINE MIR -106 156 44 284 349 53 12 chr4 33599680 33599849 -168728498 - MIR SINE MIR -85 177 2 560 51 0 0 chr4 33600632 33600710 -168727637 + L1PA2 LINE L1 6078 6155 0 1717 157 110 28 chr4 33601665 33602029 -168726318 - L1PA16 LINE L1 -1 6165 5772 * 4034 103 32 2 chr4 33601998 33602590 -168725757 - THE1B-int LTR MaLR -970 610 1 2066 144 19 32 chr4 33602590 33602959 -168725388 - THE1B LTR MaLR 0 364 1 760 140 77 0 chr4 33602959 33603102 -168725245 + L1P4 LINE L1 5331 5484 -682 * 2177 132 0 0 chr4 33603097 33603408 -168724939 - THE1-int LTR MaLR -836 744 434 * 5824 113 22 14 chr4 33603395 33604256 -168724091 + THE1B-int LTR MaLR 713 1580 0 1897 113 107 27 chr4 33604263 33604600 -168723747 + THE1B LTR MaLR 1 364 0 3985 252 18 11 chr4 33604601 33605757 -168722590 - L1 LINE L1 -812 5334 4171 21 0 0 0 chr4 33607215 33607236 -168721111 + AT_rich Low_complexity Low_complexity 1 21 0 1562 219 34 11 chr4 33607292 33607649 -168720698 - MLT1A1 LTR MaLR 0 365 1 1833 186 20 9 chr4 33607704 33608048 -168720299 + MER7A DNA MER2_type 1 346 0 209 263 76 82 chr4 33608371 33608542 -168719805 + MIR SINE MIR 72 241 -21 396 322 51 23 chr4 33608687 33608901 -168719446 + MLT1I LTR MaLR 1 220 -189 336 289 18 9 chr4 33608937 33609051 -168719296 + MLT1I LTR MaLR 295 409 0 800 238 84 116 chr4 33610026 33610295 -168718052 + HsTC2a DNA Tc2 32 285 -1615 2163 120 3 3 chr4 33610295 33610604 -168717743 + AluSg SINE Alu 1 309 -1 800 238 84 116 chr4 33610604 33610738 -168717609 + HsTC2a DNA Tc2 285 422 -322 1259 107 48 21 chr4 33610782 33610969 -168717378 + AluSg SINE Alu 3 194 -116 574 266 67 39 chr4 33610994 33611276 -168717071 + HsTC2a DNA Tc2 452 741 -1 1703 148 4 14 chr4 33611594 33611871 -168716476 - AluSx SINE Alu -22 290 17 211 309 59 0 chr4 33611880 33611948 -168716399 - L2 LINE L2 0 3272 3201 336 285 23 15 chr4 33612032 33612162 -168716185 - MER94 DNA DNA 0 134 4 317 308 26 27 chr4 33612945 33613139 -168715208 + L1MCa LINE L1 65 175 -5870 4919 203 121 16 chr4 33613200 33614945 -168713402 + L1MC3 LINE L1 5219 7125 -660 22 99 0 0 chr4 33616121 33616192 -168712155 + AT_rich Low_complexity Low_complexity 1 71 0 25 0 0 0 chr4 33616236 33616261 -168712086 + AT_rich Low_complexity Low_complexity 1 25 0 1166 248 19 13 chr4 33616749 33617067 -168711280 + L1MD3 LINE L1 7674 7993 -2 23 54 0 0 chr4 33617399 33617436 -168710911 + AT_rich Low_complexity Low_complexity 1 37 0 22 94 0 0 chr4 33617623 33617687 -168710660 + AT_rich Low_complexity Low_complexity 1 64 0 3684 34 0 0 chr4 33617858 33618299 -168710048 - L1P LINE L1 -1045 5101 4661 1544 268 144 21 chr4 33618317 33618553 -168709794 + Charlie7 DNA MER1_type 1078 1283 -1329 2324 129 5 24 chr4 33618553 33618924 -168709423 - THE1B LTR MaLR 0 364 1 1544 268 144 21 chr4 33618924 33619608 -168708739 + Charlie7 DNA MER1_type 1283 2112 -500 3946 178 36 54 chr4 33619620 33619771 -168708576 + L1MB3 LINE L1 5181 5333 -850 1529 183 38 21 chr4 33619771 33620061 -168708286 + AluJo SINE Alu 1 295 -17 3946 178 36 54 chr4 33620061 33620923 -168707424 + L1MB3 LINE L1 5333 6182 -1 275 314 33 0 chr4 33620968 33621089 -168707258 + Charlie7 DNA MER1_type 2200 2324 -288 335 209 29 35 chr4 33621192 33621364 -168706983 + (TA)n Simple_repeat Simple_repeat 1 171 0 1479 210 47 3 chr4 33621649 33621992 -168706355 - MER46B DNA MER2_type -3 233 1 3028 307 89 38 chr4 33622090 33622506 -168705841 + L2 LINE L2 1264 1657 -1656 2129 92 0 0 chr4 33622506 33622789 -168705558 + AluY SINE Alu 21 303 -8 3028 307 89 38 chr4 33622789 33623565 -168704782 + L2 LINE L2 1657 2392 -921 2064 99 3 10 chr4 33623565 33623859 -168704488 + AluSc SINE Alu 1 292 -17 3028 307 89 38 chr4 33623859 33624564 -168703783 + L2 LINE L2 2392 3313 0 5063 78 0 3 chr4 33625711 33626382 -168701965 - L1PA7 LINE L1 -6 6148 5480 238 224 0 0 chr4 33627799 33627848 -168700499 + (TA)n Simple_repeat Simple_repeat 2 50 0 3129 70 27 27 chr4 33627943 33628340 -168700007 + MLT2A1 LTR ERVL 3 402 -42 216 0 0 0 chr4 33628340 33628364 -168699983 + (CA)n Simple_repeat Simple_repeat 2 25 0 3129 70 27 27 chr4 33628364 33628408 -168699939 + MLT2A1 LTR ERVL 401 444 0 42359 96 8 2 chr4 33628408 33634028 -168694319 + HERVL-A1 LTR ERVL 1 5654 0 2962 92 50 2 chr4 33634028 33634411 -168693936 + MLT2A1 LTR ERVL 1 407 -37 300 91 0 0 chr4 33634411 33634455 -168693892 + (TA)n Simple_repeat Simple_repeat 2 45 0 2962 92 50 2 chr4 33634455 33634495 -168693852 + MLT2A1 LTR ERVL 407 444 0 187 53 26 53 chr4 33634879 33634917 -168693430 + (TTTTTG)n Simple_repeat Simple_repeat 2 38 0 3341 192 22 56 chr4 33636399 33637154 -168691193 - L1MB3 LINE L1 -120 6063 5336 1515 186 38 21 chr4 33637154 33637444 -168690903 - AluJo SINE Alu -17 295 1 3341 192 22 56 chr4 33637444 33637595 -168690752 - L1MB3 LINE L1 -847 5336 5181 1183 262 124 6 chr4 33637607 33638122 -168690225 - Charlie7 DNA MER1_type -500 2112 1537 638 297 59 24 chr4 33638237 33638291 -168690056 - Charlie7 DNA MER1_type -1235 1377 1326 2324 129 5 24 chr4 33638291 33638662 -168689685 + THE1B LTR MaLR 1 364 0 638 297 59 24 chr4 33638662 33638897 -168689450 - Charlie7 DNA MER1_type -1286 1326 1078 22 94 0 0 chr4 33639091 33639155 -168689192 + AT_rich Low_complexity Low_complexity 1 64 0 23 54 0 0 chr4 33639342 33639379 -168688968 + AT_rich Low_complexity Low_complexity 1 37 0 596 231 19 13 chr4 33639711 33639867 -168688480 - L1MD3 LINE L1 -2 7993 7837 200 226 19 19 chr4 33640000 33640106 -168688241 + GA-rich Low_complexity Low_complexity 4 109 0 836 142 0 0 chr4 33640416 33640536 -168687811 - Alu SINE Alu -191 120 1 198 0 0 0 chr4 33640706 33640728 -168687619 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 624 264 47 5 chr4 33640839 33641032 -168687315 - L1MB2 LINE L1 -2 6169 5969 3966 164 42 12 chr4 33641036 33641846 -168686501 - L1MA4 LINE L1 -4 6296 5463 659 283 113 25 chr4 33641847 33642356 -168685991 + LTR28 LTR ERV1 1 1303 -134 274 139 0 0 chr4 33642545 33642588 -168685759 - L1MA4 LINE L1 -835 5465 5423 3570 221 73 25 chr4 33643014 33644908 -168683439 - L1MC1 LINE L1 -313 6300 4314 1985 199 3 0 chr4 33644909 33645255 -168683092 + MER7A DNA MER2_type 2 346 0 361 244 46 35 chr4 33645255 33645434 -168682913 - L1MC1 LINE L1 -2111 4315 4136 318 70 0 0 chr4 33645435 33645478 -168682869 - L1PA7 LINE L1 -11 6143 6101 2369 200 67 20 chr4 33645488 33646380 -168681967 - L1MC1 LINE L1 -3654 2772 1837 29 47 0 0 chr4 33646388 33646431 -168681916 + AT_rich Low_complexity Low_complexity 1 43 0 5113 170 73 63 chr4 33646576 33647785 -168680562 - L1MC1 LINE L1 -5186 1240 20 21 57 0 0 chr4 33648113 33648148 -168680199 + AT_rich Low_complexity Low_complexity 1 35 0 1347 182 97 0 chr4 33649072 33649341 -168679006 - AluSx SINE Alu -17 295 1 59 53 0 0 chr4 33649590 33649684 -168678663 + AT_rich Low_complexity Low_complexity 1 94 0 275 379 26 13 chr4 33649940 33650093 -168678254 - MIR SINE MIR -86 176 22 240 35 0 0 chr4 33650523 33650552 -168677795 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 579 275 110 14 chr4 33650656 33650919 -168677428 - MLT1H LTR MaLR -219 330 1 904 275 16 12 chr4 33650977 33651228 -168677119 + MIR SINE MIR 1 252 -10 307 318 0 37 chr4 33651603 33651710 -168676637 - LTR16C LTR ERVL 0 491 389 1204 197 0 5 chr4 33652103 33652316 -168676031 - MLT1A1 LTR MaLR -2 363 152 2492 230 13 40 chr4 33652459 33653084 -168675263 + MLT1E2 LTR MaLR 19 626 0 223 214 0 18 chr4 33653409 33653465 -168674882 + A-rich Low_complexity Low_complexity 2 56 0 236 277 23 69 chr4 33653495 33653625 -168674722 - L2 LINE L2 -472 2842 2719 1151 256 35 19 chr4 33653797 33654158 -168674189 + L1ME2 LINE L1 5803 6330 -4 24 0 0 0 chr4 33654466 33654490 -168673857 + AT_rich Low_complexity Low_complexity 1 24 0 254 299 45 30 chr4 33654622 33654756 -168673591 - L1M4 LINE L1 -1905 4241 4106 275 316 38 38 chr4 33654900 33655033 -168673314 + MIR SINE MIR 68 200 -62 415 250 65 48 chr4 33655041 33655209 -168673138 + MLT1H LTR MaLR 1 171 -378 24 77 0 0 chr4 33655430 33655482 -168672865 + AT_rich Low_complexity Low_complexity 1 52 0 261 269 0 0 chr4 33655718 33655785 -168672562 + (TA)n Simple_repeat Simple_repeat 1 67 0 293 234 93 9 chr4 33655904 33656011 -168672336 + MER58 DNA MER1_type 21 136 -2284 338 349 43 29 chr4 33656097 33656306 -168672041 - HAL1b LINE L1 -747 601 390 1823 207 31 3 chr4 33656334 33656686 -168671661 + MLT2D LTR ERVL 1 362 -52 288 231 0 0 chr4 33656758 33656862 -168671485 + (TA)n Simple_repeat Simple_repeat 1 104 0 445 314 23 8 chr4 33656867 33657131 -168671216 - L1MEc LINE L1 -4883 1513 1246 1901 185 43 41 chr4 33657210 33657653 -168670694 - L1MB8 LINE L1 -13 6165 5722 2082 125 3 3 chr4 33658093 33658396 -168669951 + AluSx SINE Alu 1 303 -9 1144 126 0 24 chr4 33658396 33658563 -168669784 + AluSq SINE Alu 134 296 -17 661 265 0 0 chr4 33658962 33659109 -168669238 - FRAM SINE Alu -26 150 4 531 294 59 20 chr4 33659112 33659316 -168669031 + MLT1H LTR MaLR 71 282 -267 354 238 68 62 chr4 33659364 33659533 -168668814 + MLT1H LTR MaLR 371 547 -8 225 393 67 7 chr4 33660138 33660288 -168668059 - MIR3 SINE MIR -14 194 36 202 234 0 0 chr4 33660763 33660810 -168667537 + MIR SINE MIR 97 143 -119 1537 228 33 20 chr4 33660843 33661234 -168667113 - MSTD LTR MaLR 0 396 1 2641 280 49 28 chr4 33662256 33663321 -168665026 + L1MC3 LINE L1 8 1076 -4969 673 264 42 2 chr4 33663340 33663692 -168664655 + L1MC3 LINE L1 2504 2873 -3691 270 89 0 22 chr4 33663698 33663741 -168664606 + MLT1A1 LTR MaLR 63 104 -261 245 140 80 0 chr4 33663741 33663791 -168664556 - MLT2A2 LTR ERVL 0 453 400 263 648 0 0 chr4 33663798 33663977 -168664370 + (TA)n Simple_repeat Simple_repeat 2 180 0 268 122 0 0 chr4 33664001 33664042 -168664305 + MLT2D LTR ERVL 405 445 -8 237 33 0 0 chr4 33664042 33664072 -168664275 + (TC)n Simple_repeat Simple_repeat 2 31 0 225 139 0 0 chr4 33664072 33664115 -168664232 + (TA)n Simple_repeat Simple_repeat 2 44 0 271 261 15 0 chr4 33664253 33664318 -168664029 - AluJ/FRAM SINE Alu -12 290 225 * 2514 86 11 30 chr4 33664308 33664680 -168663667 - MLT2A1 LTR ERVL -79 365 1 1262 252 8 4 chr4 33664680 33664945 -168663402 + MLT1A1 LTR MaLR 100 365 0 5788 257 58 39 chr4 33664945 33668218 -168660129 + L1MC3 LINE L1 2958 5821 -743 1203 309 27 38 chr4 33668238 33668795 -168659552 + L1PA15-16 LINE L1 1 551 -6298 8182 248 55 42 chr4 33668984 33670588 -168657759 + L1M2 LINE L1 655 2237 -4611 1718 52 5 0 chr4 33670588 33670799 -168657548 + AluYa5 SINE Alu 1 212 -99 8182 248 55 42 chr4 33670799 33672080 -168656267 + L1M2 LINE L1 2237 3500 -3348 306 0 0 0 chr4 33672080 33672114 -168656233 + (CA)n Simple_repeat Simple_repeat 2 35 0 8182 248 55 42 chr4 33672114 33673489 -168654858 + L1M2 LINE L1 3500 5270 -1578 3461 230 45 43 chr4 33673478 33674536 -168653811 + L1MC3 LINE L1 6379 7438 -765 * 405 418 31 15 chr4 33674564 33675040 -168653307 + L1 LINE L1 1 484 -5797 1147 257 56 24 chr4 33675354 33675767 -168652580 + L1 LINE L1 1122 1547 -4734 5101 186 22 26 chr4 33675930 33677063 -168651284 + L1 LINE L1 3637 4765 -1585 12618 258 31 30 chr4 33677072 33682509 -168645838 + L1MA4 LINE L1 12 6003 -1735 5276 152 10 4 chr4 33682509 33684046 -168644301 + L1PA15 LINE L1 4611 6165 0 12618 258 31 30 chr4 33684046 33685778 -168642569 + L1MA4 LINE L1 6003 7732 -6 3429 204 19 18 chr4 33685770 33686100 -168642247 + L1MC3 LINE L1 6196 5937 -422 * 2289 41 0 34 chr4 33686100 33686418 -168641929 + AluY SINE Alu 1 308 0 3429 204 19 18 chr4 33686418 33686842 -168641505 + L1MC3 LINE L1 5936 6358 -1 598 304 78 0 chr4 33686876 33687106 -168641241 - MIR SINE MIR -1 261 14 1299 130 14 5 chr4 33687633 33687849 -168640498 - L1MA4A LINE L1 0 6303 6086 289 143 0 0 chr4 33687852 33687901 -168640446 + L1MA4A LINE L1 6039 6087 -216 2020 99 4 15 chr4 33688574 33688846 -168639501 - AluSx SINE Alu -23 289 21 31 68 0 0 chr4 33688846 33688905 -168639442 + AT_rich Low_complexity Low_complexity 1 59 0 195 184 0 0 chr4 33688973 33689011 -168639336 + CT-rich Low_complexity Low_complexity 2 39 0 2025 128 0 0 chr4 33690146 33690442 -168637905 - AluSg1 SINE Alu -13 296 1 21 82 0 0 chr4 33690722 33690771 -168637576 + AT_rich Low_complexity Low_complexity 1 49 0 353 276 31 49 chr4 33693055 33693218 -168635129 + L2 LINE L2 3149 3308 -5 327 292 84 32 chr4 33694076 33694230 -168634117 - MIR SINE MIR -1 261 100 * 631 301 45 29 chr4 33694225 33694471 -168633876 - MIR SINE MIR 0 262 13 543 292 107 23 chr4 33694512 33694728 -168633619 + MIR SINE MIR 29 262 0 1606 221 43 2 chr4 33695706 33696100 -168632247 - L1PA16 LINE L1 -861 5285 4876 4955 149 29 5 chr4 33696100 33696952 -168631395 + L1PA16 LINE L1 5283 6155 -11 2108 116 0 3 chr4 33698324 33698617 -168629730 + AluSq SINE Alu 5 296 -17 31 0 0 0 chr4 33698620 33698651 -168629696 + AT_rich Low_complexity Low_complexity 1 31 0 26 0 0 0 chr4 33698707 33698733 -168629614 + AT_rich Low_complexity Low_complexity 1 26 0 1039 214 29 0 chr4 33698780 33698986 -168629361 - MER58A DNA MER1_type -12 212 1 1278 137 5 15 chr4 33700620 33700825 -168627522 + AluSx SINE Alu 5 207 -105 711 220 47 0 chr4 33700881 33701031 -168627316 - FRAM SINE Alu -27 149 1 368 289 40 112 chr4 33701516 33701588 -168626759 - MIR SINE MIR -1 261 185 1407 279 98 28 chr4 33701588 33702197 -168626150 + MLT1E1 LTR MaLR 3 654 0 368 289 40 112 chr4 33702197 33702401 -168625946 - MIR SINE MIR -77 185 5 346 361 47 12 chr4 33702409 33702578 -168625769 - MIR SINE MIR -70 192 18 23 0 0 0 chr4 33703098 33703121 -168625226 + AT_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chr4 33705750 33705785 -168622562 + AT_rich Low_complexity Low_complexity 1 35 0 736 297 92 60 chr4 33705797 33706003 -168622344 - L2 LINE L2 -7 3306 3108 369 0 0 0 chr4 33706003 33706044 -168622303 + (TA)n Simple_repeat Simple_repeat 2 42 0 736 297 92 60 chr4 33706044 33706291 -168622056 - L2 LINE L2 -205 3108 2838 211 244 50 92 chr4 33706380 33706438 -168621909 - MIR SINE MIR -74 188 136 710 235 105 10 chr4 33706438 33706638 -168621709 - MER20 DNA MER1_type 0 219 1 211 244 50 92 chr4 33706638 33706698 -168621649 - MIR SINE MIR -126 136 75 2170 83 17 3 chr4 33707036 33707338 -168621009 - L1P4 LINE L1 -493 5673 5368 2155 130 49 47 chr4 33707342 33707749 -168620598 + L1PA16 LINE L1 5750 6157 -9 1944 144 3 3 chr4 33709006 33709311 -168619036 - AluSq SINE Alu 0 305 1 1773 194 5 22 chr4 33710704 33711075 -168617272 + MLT1A1 LTR MaLR 1 365 0 1189 240 50 36 chr4 33711409 33711793 -168616554 + MLT1B LTR MaLR 1 389 -1 195 376 43 0 chr4 33711894 33711987 -168616360 + MIR3 SINE MIR 81 177 -31 872 251 106 52 chr4 33712136 33712579 -168615768 - MLT1C LTR MaLR 0 467 1 23 0 0 0 chr4 33712745 33712768 -168615579 + AT_rich Low_complexity Low_complexity 1 23 0 2439 180 4 51 chr4 33713249 33713743 -168614604 + Tigger3b DNA MER2_type 2 472 -759 604 82 63 6 chr4 33713771 33713929 -168614418 + (TA)n Simple_repeat Simple_repeat 2 168 0 3224 169 88 9 chr4 33713957 33714642 -168613705 + Tigger3b DNA MER2_type 493 1231 0 21 71 0 0 chr4 33714914 33714956 -168613391 + AT_rich Low_complexity Low_complexity 1 42 0 24 32 0 0 chr4 33715035 33715066 -168613281 + AT_rich Low_complexity Low_complexity 1 31 0 1020 230 50 76 chr4 33715418 33715800 -168612547 - MLT1B LTR MaLR -2 386 1 1947 147 7 3 chr4 33715993 33716300 -168612047 + AluSx SINE Alu 3 310 -2 182 306 71 24 chr4 33716491 33716576 -168611771 + MIR SINE MIR 92 180 -82 2187 98 0 0 chr4 33716965 33717260 -168611087 + AluSc SINE Alu 1 295 -14 186 43 0 0 chr4 33717611 33717634 -168610713 + (TA)n Simple_repeat Simple_repeat 1 23 0 489 115 26 0 chr4 33718077 33718155 -168610192 + MADE1 DNA Mariner 1 80 0 251 399 21 7 chr4 33718280 33718423 -168609924 - MIR SINE MIR -105 157 13 464 277 28 23 chr4 33720177 33720354 -168607993 - MER5B DNA MER1_type 0 178 1 193 282 81 60 chr4 33720554 33720703 -168607644 + L2 LINE L2 3147 3298 -15 23 0 0 0 chr4 33721235 33721258 -168607089 + AT_rich Low_complexity Low_complexity 1 23 0 269 326 58 77 chr4 33721340 33721601 -168606746 - MIR SINE MIR -2 260 5 2145 168 33 2 chr4 33721655 33722053 -168606294 - MSTB LTR MaLR -2 424 15 541 236 220 16 chr4 33722584 33722766 -168605581 + MER20 DNA MER1_type 1 219 0 996 158 18 0 chr4 33723812 33724156 -168604191 - AluSx SINE Alu 0 490 144 947 114 23 0 chr4 33724209 33724340 -168604007 - AluSx SINE Alu -176 137 4 335 296 179 25 chr4 33724587 33724783 -168603564 - L1ME LINE L1 -296 5825 5600 25 75 0 0 chr4 33724998 33725051 -168603296 + AT_rich Low_complexity Low_complexity 1 53 0 295 345 144 40 chr4 33725107 33725461 -168602886 - L2 LINE L2 0 3313 2923 766 231 9 38 chr4 33726193 33726405 -168601942 + MER63A DNA MER1_type 4 209 -1 27 29 0 0 chr4 33727302 33727336 -168601011 + AT_rich Low_complexity Low_complexity 1 34 0 22 0 0 0 chr4 33727525 33727547 -168600800 + AT_rich Low_complexity Low_complexity 1 22 0 436 178 11 33 chr4 33727926 33728016 -168600331 - Charlie1 DNA MER1_type -1253 1508 1421 300 329 0 0 chr4 33728024 33728100 -168600247 - Charlie1 DNA MER1_type -2683 78 3 993 321 46 32 chr4 33728102 33728608 -168599739 + L2 LINE L2 2793 3304 -9 335 263 34 76 chr4 33728639 33728721 -168599626 - HAL1 LINE L1 -1493 1014 930 1989 127 3 0 chr4 33728721 33729034 -168599313 - AluSx SINE Alu 0 314 1 335 263 34 76 chr4 33729034 33729212 -168599135 - HAL1 LINE L1 -1577 930 764 1765 174 30 66 chr4 33729301 33729837 -168598510 + MLT2A2 LTR ERVL 1 418 -35 2055 110 10 0 chr4 33729837 33730127 -168598220 - AluY SINE Alu -18 293 1 1765 174 30 66 chr4 33730127 33730162 -168598185 + MLT2A2 LTR ERVL 418 453 0 885 252 32 9 chr4 33730266 33730484 -168597863 + MER58A DNA MER1_type 1 223 -1 26 50 0 0 chr4 33730982 33731022 -168597325 + AT_rich Low_complexity Low_complexity 1 40 0 27 81 0 0 chr4 33731410 33731472 -168596875 + AT_rich Low_complexity Low_complexity 1 62 0 548 231 22 8 chr4 33731515 33731649 -168596698 + MLT1D LTR MaLR 3 138 -367 357 343 70 0 chr4 33731746 33731918 -168596429 + L1ME3A LINE L1 5147 5330 -816 1301 320 60 17 chr4 33731987 33732303 -168596044 + L1ME3A LINE L1 5432 5733 -437 333 0 0 0 chr4 33732303 33732340 -168596007 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 1301 320 60 17 chr4 33732340 33732727 -168595620 + L1ME3A LINE L1 5733 6165 -5 1161 193 24 60 chr4 33733483 33733921 -168594426 - MLT1D LTR MaLR 0 505 1 1907 184 33 32 chr4 33734394 33734945 -168593402 - MLT2A2 LTR ERVL 0 554 3 1004 205 56 14 chr4 33734989 33735283 -168593064 + LTR24B LTR ERV1 231 467 0 789 304 26 11 chr4 33735283 33735549 -168592798 + LTR24B-int LTR ERV1 1 270 -4853 792 322 54 37 chr4 33737836 33738264 -168590083 + MER84-int LTR ERV1 149 583 -4064 352 323 42 39 chr4 33738826 33739157 -168589190 + MER84-int LTR ERV1 3314 3645 -3156 310 336 18 27 chr4 33739186 33739409 -168588938 + MER84-int LTR ERV1 4718 4938 -3797 1692 173 4 0 chr4 33740878 33741155 -168587192 + AluSx SINE Alu 30 307 -5 337 258 96 22 chr4 33742085 33742263 -168586084 + MER84-int LTR ERV1 4265 4455 -499 892 238 47 55 chr4 33742781 33743166 -168585181 + LTR24B LTR ERV1 188 467 0 1951 223 101 94 chr4 33743537 33744531 -168583816 - MER4-int LTR ERV1 -1006 5592 2522 273 276 32 73 chr4 33744534 33744657 -168583690 - MER52A LTR ERV1 -4 1751 1634 954 270 94 97 chr4 33744678 33745489 -168582858 - MER52A LTR ERV1 -296 1459 652 930 185 51 65 chr4 33745490 33745571 -168582776 - MER4-int LTR ERV1 -2224 4021 3940 198 0 0 0 chr4 33745571 33745593 -168582754 + (CAA)n Simple_repeat Simple_repeat 2 23 0 930 185 51 65 chr4 33745593 33745850 -168582497 - MER4-int LTR ERV1 -2305 3940 2477 317 225 0 56 chr4 33745922 33746011 -168582336 - MER4-int LTR ERV1 -2868 3730 3647 323 275 42 97 chr4 33746112 33746443 -168581904 - MER4-int LTR ERV1 -2572 2551 2239 * 367 204 132 24 chr4 33746436 33746603 -168581744 - MER4-int LTR ERV1 -6377 1743 1559 507 128 20 39 chr4 33746700 33746802 -168581545 + L1MA3 LINE L1 6206 6305 0 467 263 32 5 chr4 33746805 33746991 -168581356 - MER4-int LTR ERV1 -6590 1530 1340 1000 253 45 86 chr4 33747050 33747632 -168580715 - MER4-int LTR ERV1 -2751 2120 1563 736 235 137 35 chr4 33747653 33747938 -168580409 - MER34 LTR ERV1 -195 347 34 315 236 8 126 chr4 33748235 33748362 -168579985 - MER4-int LTR ERV1 -4048 823 712 548 240 31 106 chr4 33748484 33748738 -168579609 - MER4-int LTR ERV1 -4583 288 54 209 264 45 32 chr4 33749275 33749430 -168578917 + (TATATG)n Simple_repeat Simple_repeat 4 160 0 219 266 0 0 chr4 33750788 33750852 -168577495 + CT-rich Low_complexity Low_complexity 4 67 0 1762 171 4 4 chr4 33751020 33751330 -168577017 - AluJb SINE Alu 0 310 1 314 164 0 14 chr4 33751791 33751846 -168576501 + CT-rich Low_complexity Low_complexity 1 56 -16 225 0 0 0 chr4 33751846 33751871 -168576476 + (CA)n Simple_repeat Simple_repeat 1 25 0 314 164 0 14 chr4 33751871 33751888 -168576459 + CT-rich Low_complexity Low_complexity 56 72 0 1230 85 11 17 chr4 33753233 33753410 -168574937 + AluY SINE Alu 136 311 0 236 294 0 24 chr4 33753523 33753608 -168574739 + L1MEc LINE L1 176 258 -6138 217 211 0 0 chr4 33753738 33753776 -168574571 - L3 LINE CR1 -156 1421 1384 2370 50 3 10 chr4 33753961 33754260 -168574087 + AluY SINE Alu 1 297 -14 250 316 95 30 chr4 33754531 33754699 -168573648 - L2 LINE L2 -2 3311 3133 288 308 0 0 chr4 33755090 33755168 -168573179 + CT-rich Low_complexity Low_complexity 2 79 0 268 350 21 21 chr4 33755174 33755317 -168573030 - MIR SINE MIR -71 191 49 1175 216 66 69 chr4 33756553 33756932 -168571415 + MLT1B LTR MaLR 1 378 -12 316 319 78 21 chr4 33757378 33757569 -168570778 + MIR SINE MIR 54 255 -7 285 376 56 11 chr4 33758047 33758225 -168570122 - MIR SINE MIR -57 205 20 24 67 0 0 chr4 33758458 33758503 -168569844 + AT_rich Low_complexity Low_complexity 1 45 0 308 98 0 0 chr4 33759132 33759173 -168569174 - MER53 DNA DNA 0 189 149 1600 188 25 53 chr4 33759189 33759588 -168568759 + MLT1B LTR MaLR 3 390 0 2127 123 0 0 chr4 33759829 33760122 -168568225 + AluSg SINE Alu 1 293 -17 333 280 34 0 chr4 33760334 33760452 -168567895 - L1ME4a LINE L1 -1 6120 5999 5987 99 6 1 chr4 33760493 33761339 -168567008 - L1PA8A LINE L1 -28 6103 5254 216 320 49 41 chr4 33761688 33761810 -168566537 + L2 LINE L2 3145 3267 -5 478 342 121 0 chr4 33762140 33762479 -168565868 + HsTC2 DNA Tc2 485 864 -1034 26 0 0 0 chr4 33762664 33762690 -168565657 + AT_rich Low_complexity Low_complexity 1 26 0 1682 186 3 0 chr4 33762711 33763006 -168565341 + AluJo SINE Alu 15 310 -2 333 68 0 0 chr4 33763015 33763059 -168565288 + (GGAA)n Simple_repeat Simple_repeat 4 47 0 186 291 36 0 chr4 33763118 33763173 -168565174 + MIR SINE MIR 74 130 -78 297 336 68 29 chr4 33763491 33763710 -168564637 - L1ME4a LINE L1 -224 5897 5654 2057 109 3 0 chr4 33763710 33764021 -168564326 - AluSp SINE Alu 0 312 1 297 336 68 29 chr4 33764021 33764184 -168564163 - L1ME4a LINE L1 -467 5654 5499 192 301 126 55 chr4 33764337 33764520 -168563827 + L2 LINE L2 2155 2350 -964 203 130 0 43 chr4 33764878 33764924 -168563423 + (TAAAAA)n Simple_repeat Simple_repeat 4 47 0 22 35 0 0 chr4 33764941 33764970 -168563377 + AT_rich Low_complexity Low_complexity 1 29 0 383 75 0 252 chr4 33765649 33765756 -168562591 - MADE1 DNA Mariner 0 80 1 26 0 0 0 chr4 33766647 33766673 -168561674 + AT_rich Low_complexity Low_complexity 1 26 0 3318 211 65 9 chr4 33767037 33767904 -168560443 + L1MB8 LINE L1 5256 6170 -8 25 0 0 0 chr4 33768438 33768463 -168559884 + AT_rich Low_complexity Low_complexity 1 25 0 24 96 0 0 chr4 33768998 33769071 -168559276 + AT_rich Low_complexity Low_complexity 1 73 0 520 330 87 42 chr4 33769181 33769584 -168558763 - HAL1 LINE L1 -868 1639 1219 332 317 81 34 chr4 33771587 33772057 -168556290 - L1ME3A LINE L1 -306 5864 5373 205 222 19 0 chr4 33772086 33772140 -168556207 + T-rich Low_complexity Low_complexity 4 58 0 22 56 0 0 chr4 33773230 33773266 -168555081 + AT_rich Low_complexity Low_complexity 1 36 0 258 32 0 0 chr4 33774340 33774371 -168553976 + (TG)n Simple_repeat Simple_repeat 1 31 0 183 42 0 0 chr4 33775158 33775182 -168553165 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 463 303 13 7 chr4 33776121 33776276 -168552071 - MLT1I LTR MaLR -253 156 1 1547 205 45 22 chr4 33776304 33776588 -168551759 + MLT1A1 LTR MaLR 1 296 -69 2202 116 7 0 chr4 33776588 33776898 -168551449 - AluSx SINE Alu 0 312 1 1547 205 45 22 chr4 33776898 33776969 -168551378 + MLT1A1 LTR MaLR 296 364 -1 1635 186 9 15 chr4 33777167 33777506 -168550841 + MER1B DNA MER1_type 1 337 0 874 304 80 26 chr4 33778661 33779049 -168549298 - MLT1I LTR MaLR 0 409 1 26 74 0 0 chr4 33780289 33780343 -168548004 + AT_rich Low_complexity Low_complexity 1 54 0 842 216 2 6 chr4 33780345 33780529 -168547818 + MER58B DNA MER1_type 37 340 -1 22 0 0 0 chr4 33780551 33780573 -168547774 + AT_rich Low_complexity Low_complexity 1 22 0 34 65 0 0 chr4 33780672 33780734 -168547613 + AT_rich Low_complexity Low_complexity 1 62 0 328 305 67 43 chr4 33780998 33781162 -168547185 + MIR SINE MIR 1 168 -94 282 29 0 0 chr4 33782400 33782435 -168545912 + (TG)n Simple_repeat Simple_repeat 1 35 0 1004 209 115 69 chr4 33782571 33782920 -168545427 - MLT1A1 LTR MaLR 0 365 1 2423 230 25 68 chr4 33782996 33783688 -168544659 + LTR8 LTR ERV1 30 691 0 301 301 28 75 chr4 33784409 33784595 -168543752 - MIR SINE MIR -14 248 73 1495 167 57 18 chr4 33785356 33785692 -168542655 + L1PA16 LINE L1 5816 6164 -2 32 26 0 0 chr4 33785710 33785749 -168542598 + AT_rich Low_complexity Low_complexity 1 39 0 222 315 0 0 chr4 33786352 33786406 -168541941 - MIR SINE MIR -182 80 27 23 0 0 0 chr4 33786710 33786733 -168541614 + AT_rich Low_complexity Low_complexity 1 23 0 32 31 0 46 chr4 33787099 33787164 -168541183 + AT_rich Low_complexity Low_complexity 1 62 0 2267 88 0 52 chr4 33787818 33788146 -168540201 - AluY SINE Alu 0 311 1 191 325 52 0 chr4 33788431 33788508 -168539839 + MIR SINE MIR 80 160 -102 198 143 0 0 chr4 33789335 33789370 -168538977 + (TC)n Simple_repeat Simple_repeat 2 36 0 237 288 90 27 chr4 33792114 33792225 -168536122 + L2 LINE L2 3196 3313 0 1540 84 5 0 chr4 33794034 33794249 -168534098 - L1PA8 LINE L1 0 6172 5957 613 335 37 0 chr4 33796156 33796347 -168532000 + MIR SINE MIR 1 198 -64 1366 186 28 0 chr4 33796370 33796617 -168531730 + AluJb SINE Alu 29 282 -30 1505 256 55 21 chr4 33796666 33797100 -168531247 + MLT1F1 LTR MaLR 5 453 -114 405 0 0 0 chr4 33797253 33797298 -168531049 + (CA)n Simple_repeat Simple_repeat 2 46 0 2276 251 26 4 chr4 33797298 33797836 -168530511 - MER89 LTR ERV1 -9 550 1 238 237 85 0 chr4 33798681 33798740 -168529607 - L2 LINE L2 0 3313 3250 204 403 67 20 chr4 33800217 33800366 -168527981 + L2 LINE L2 3117 3272 0 261 0 0 0 chr4 33800678 33800707 -168527640 + (T)n Simple_repeat Simple_repeat 1 29 0 1953 153 138 13 chr4 33800886 33801278 -168527069 - L1MA3 LINE L1 0 6305 5865 2656 29 0 3 chr4 33801369 33801680 -168526667 - AluYb8 SINE Alu -8 310 1 185 0 40 0 chr4 33801766 33801791 -168526556 + (CA)n Simple_repeat Simple_repeat 2 27 0 2683 42 6 0 chr4 33801841 33802174 -168526173 + L1PA4 LINE L1 5821 6155 0 183 100 0 0 chr4 33802229 33802259 -168526088 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 189 0 0 0 chr4 33802317 33802338 -168526009 + (TTCA)n Simple_repeat Simple_repeat 2 22 0 208 347 20 0 chr4 33802537 33802635 -168525712 - L2 LINE L2 -1216 2098 1999 1802 126 53 0 chr4 33802892 33803193 -168525154 - L1PA13 LINE L1 -1 6162 5846 1781 148 21 3 chr4 33805198 33805489 -168522858 + AluSx SINE Alu 1 296 -16 227 53 0 26 chr4 33806926 33806964 -168521383 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 203 184 20 0 chr4 33806982 33807031 -168521316 + (TG)n Simple_repeat Simple_repeat 1 50 0 235 329 14 0 chr4 33807035 33807105 -168521242 + MIR SINE MIR 59 129 -133 206 290 30 50 chr4 33807211 33807311 -168521036 - MIR SINE MIR -66 142 45 259 367 19 60 chr4 33807343 33807558 -168520789 - L2 LINE L2 -478 2836 2631 375 88 0 29 chr4 33808856 33808924 -168519423 - L1PA15 LINE L1 -7 6158 6093 21 36 0 0 chr4 33809902 33809930 -168518417 + AT_rich Low_complexity Low_complexity 1 28 0 2225 107 0 3 chr4 33810071 33810379 -168517968 - AluSg SINE Alu -3 307 1 969 251 0 9 chr4 33810771 33810994 -168517353 - MER58A DNA MER1_type 0 224 4 226 350 21 7 chr4 33811894 33812034 -168516313 - L2 LINE L2 -957 2357 2216 21 36 0 0 chr4 33813220 33813248 -168515099 + AT_rich Low_complexity Low_complexity 1 28 0 1265 253 94 25 chr4 33813414 33813944 -168514403 - MLT1E2 LTR MaLR 0 626 90 340 258 73 24 chr4 33813982 33814106 -168514241 + MIR SINE MIR 25 154 -108 1634 39 0 0 chr4 33814921 33815127 -168513220 - L1PA5 LINE L1 -1606 4540 4335 7228 41 3 3 chr4 33815132 33816742 -168511605 + L1PA5 LINE L1 4542 6151 -3 329 326 69 50 chr4 33820053 33820314 -168508033 - L1M4 LINE L1 -1313 4833 4568 356 319 108 54 chr4 33820455 33821577 -168506770 - L1M4 LINE L1 -2368 3778 2570 215 247 222 12 chr4 33821680 33821761 -168506586 + L2 LINE L2 2414 2511 -803 663 287 93 0 chr4 33821882 33822098 -168506249 - L2 LINE L2 -671 2643 2408 337 313 6 30 chr4 33822535 33822701 -168505646 - L1MC4a LINE L1 -1878 5930 5769 307 228 65 11 chr4 33822777 33822869 -168505478 - L1M4 LINE L1 -3859 2287 2191 3324 187 18 0 chr4 33822911 33823511 -168504836 + Tigger1 DNA MER2_type 1 611 -1807 * 9686 126 19 37 chr4 33823479 33823709 -168504638 + Tigger1 DNA MER2_type 796 1029 -1389 1920 112 38 0 chr4 33823709 33823999 -168504348 + AluSp SINE Alu 9 308 0 9686 126 19 37 chr4 33823999 33825420 -168502927 + Tigger1 DNA MER2_type 1029 2418 0 869 235 26 33 chr4 33825999 33826305 -168502042 + LTR37A LTR ERV1 55 358 -68 2646 207 74 16 chr4 33826305 33826445 -168501902 - L1MA9 LINE L1 -4 6308 6177 345 47 0 0 chr4 33826445 33826488 -168501859 + (TG)n Simple_repeat Simple_repeat 2 44 0 2646 207 74 16 chr4 33826488 33827013 -168501334 - L1MA9 LINE L1 -135 6177 5605 243 320 0 27 chr4 33827479 33827554 -168500793 - MIR SINE MIR -142 120 48 22 0 0 0 chr4 33827565 33827587 -168500760 + AT_rich Low_complexity Low_complexity 1 22 0 200 288 0 0 chr4 33828891 33828957 -168499390 + T-rich Low_complexity Low_complexity 1 66 0 22 0 0 0 chr4 33829587 33829609 -168498738 + AT_rich Low_complexity Low_complexity 1 22 0 591 13 27 0 chr4 33829889 33829964 -168498383 - L1PA4 LINE L1 -2 6153 6077 3523 155 41 36 chr4 33831900 33832681 -168495666 + LTR1 LTR ERV1 1 785 0 466 239 92 54 chr4 33832694 33832878 -168495469 + MIR SINE MIR 72 262 0 1896 168 0 0 chr4 33833522 33833832 -168494515 + AluSx SINE Alu 1 310 -2 2213 119 27 3 chr4 33834500 33834836 -168493511 - THE1A LTR MaLR 0 355 12 11227 97 9 15 chr4 33834836 33836416 -168491931 - THE1A-int LTR MaLR -9 1571 1 1460 135 9 0 chr4 33836416 33836645 -168491702 - THE1A LTR MaLR 0 355 125 768 119 24 24 chr4 33836762 33836888 -168491459 - THE1A LTR MaLR -249 126 1 315 0 0 0 chr4 33837477 33837512 -168490835 + (CA)n Simple_repeat Simple_repeat 2 36 0 390 260 65 55 chr4 33837574 33837774 -168490573 + L2 LINE L2 3112 3313 0 232 300 14 0 chr4 33837776 33837846 -168490501 + MIR SINE MIR 171 241 -21 189 313 109 0 chr4 33839684 33839748 -168488599 + L2 LINE L2 3202 3272 0 291 373 46 14 chr4 33839995 33840212 -168488135 - MIR SINE MIR -28 234 11 240 277 53 21 chr4 33840658 33840752 -168487595 + L2 LINE L2 2158 2254 -1060 471 290 39 120 chr4 33841013 33841347 -168487000 + MLT1J LTR MaLR 37 343 -168 427 321 37 23 chr4 33841359 33841574 -168486773 + L2 LINE L2 3088 3305 -8 21 71 0 0 chr4 33842503 33842545 -168485802 + AT_rich Low_complexity Low_complexity 1 42 0 235 338 31 59 chr4 33842853 33843075 -168485272 - L2 LINE L2 0 3313 3098 1924 154 39 20 chr4 33843076 33843432 -168484915 + THE1C LTR MaLR 13 375 0 438 261 64 25 chr4 33843438 33843595 -168484752 - L2 LINE L2 -278 3035 2873 327 232 27 18 chr4 33844962 33845074 -168483273 + L1MC/D LINE L1 4532 4644 -1502 1441 221 0 0 chr4 33845102 33845373 -168482974 - MLT2C1 LTR ERVL -126 271 1 26 30 0 0 chr4 33845671 33845704 -168482643 + AT_rich Low_complexity Low_complexity 1 33 0 245 271 80 33 chr4 33846739 33846890 -168481457 + L1MC/D LINE L1 5595 5752 -2056 758 244 176 0 chr4 33847087 33847325 -168481022 + L1M4 LINE L1 4562 4841 -1305 182 175 0 18 chr4 33847349 33847406 -168480941 + (TTAA)n Simple_repeat Simple_repeat 3 58 0 468 256 56 0 chr4 33847407 33847532 -168480815 + L1M4 LINE L1 4847 4978 -1168 24 0 0 0 chr4 33847702 33847726 -168480621 + AT_rich Low_complexity Low_complexity 1 24 0 198 370 49 25 chr4 33849290 33849533 -168478814 + L2 LINE L2 1129 1377 -1937 430 333 44 15 chr4 33849539 33849743 -168478604 - MIR SINE MIR -3 259 50 1765 135 97 26 chr4 33849920 33850260 -168478087 + THE1B LTR MaLR 1 364 0 299 326 157 30 chr4 33850318 33850379 -168477968 + L2 LINE L2 1610 1662 -1652 186 103 0 0 chr4 33850379 33850408 -168477939 + (TAA)n Simple_repeat Simple_repeat 2 30 0 299 326 157 30 chr4 33850408 33850672 -168477675 + L2 LINE L2 1662 1996 -1318 993 257 85 101 chr4 33850672 33851275 -168477072 - MLT1E LTR MaLR 0 593 1 299 326 157 30 chr4 33851275 33851344 -168477003 + L2 LINE L2 1996 2055 -1259 280 305 73 49 chr4 33851427 33851591 -168476756 + L2 LINE L2 2214 2381 -933 250 279 25 51 chr4 33852133 33852212 -168476135 + L2 LINE L2 2932 3008 -264 204 158 0 0 chr4 33852889 33852927 -168475420 + (TA)n Simple_repeat Simple_repeat 2 39 0 214 182 78 0 chr4 33852995 33853072 -168475275 + (TA)n Simple_repeat Simple_repeat 1 83 0 21 0 0 0 chr4 33853172 33853193 -168475154 + AT_rich Low_complexity Low_complexity 1 21 0 973 219 15 5 chr4 33853479 33853684 -168474663 + MER3 DNA MER1_type 1 207 -2 863 253 20 0 chr4 33853900 33854098 -168474249 + MER58A DNA MER1_type 20 221 -3 201 349 16 32 chr4 33854181 33854307 -168474040 - L2 LINE L2 -182 3090 2967 191 189 19 0 chr4 33854377 33854430 -168473917 + (TA)n Simple_repeat Simple_repeat 2 55 0 40 42 0 14 chr4 33854559 33854606 -168473741 + AT_rich Low_complexity Low_complexity 1 48 -23 215 39 19 58 chr4 33854606 33854658 -168473689 + (TAAA)n Simple_repeat Simple_repeat 4 53 0 40 42 0 14 chr4 33854658 33854682 -168473665 + AT_rich Low_complexity Low_complexity 48 71 0 24 0 0 0 chr4 33855103 33855127 -168473220 + AT_rich Low_complexity Low_complexity 1 24 0 397 264 16 16 chr4 33856953 33857078 -168471269 - MER103 DNA DNA -39 127 3 426 20 0 0 chr4 33857513 33857564 -168470783 + (TG)n Simple_repeat Simple_repeat 2 52 0 201 302 168 47 chr4 33858408 33858557 -168469790 + MIR SINE MIR 35 201 -61 1049 183 0 0 chr4 33858673 33858853 -168469494 - L1PB4 LINE L1 -13 6143 5964 200 189 0 0 chr4 33858867 33858904 -168469443 + CT-rich Low_complexity Low_complexity 4 40 0 25 31 0 0 chr4 33858941 33858973 -168469374 + AT_rich Low_complexity Low_complexity 1 32 0 2253 53 3 23 chr4 33860134 33860435 -168467912 + AluY SINE Alu 1 295 -16 22 35 0 0 chr4 33861453 33861482 -168466865 + AT_rich Low_complexity Low_complexity 1 29 0 218 28 0 56 chr4 33862460 33862496 -168465851 + (TTCC)n Simple_repeat Simple_repeat 3 36 0 1902 131 0 81 chr4 33862789 33863124 -168465223 + AluSx SINE Alu 2 309 -3 2096 147 11 22 chr4 33863138 33863506 -168464841 + THE1B LTR MaLR 1 364 0 21 57 0 0 chr4 33863728 33863763 -168464584 + AT_rich Low_complexity Low_complexity 1 35 0 231 189 0 0 chr4 33863844 33863897 -168464450 + (TA)n Simple_repeat Simple_repeat 2 54 0 2036 108 10 7 chr4 33864263 33864558 -168463789 + AluSq SINE Alu 1 296 -17 2406 30 39 23 chr4 33864690 33864995 -168463352 - AluY SINE Alu -1 310 1 180 158 0 0 chr4 33865765 33865803 -168462544 + (TG)n Simple_repeat Simple_repeat 2 39 0 21 57 0 0 chr4 33866496 33866531 -168461816 + AT_rich Low_complexity Low_complexity 1 35 0 28 48 0 0 chr4 33867178 33867220 -168461127 + AT_rich Low_complexity Low_complexity 1 42 0 183 234 21 0 chr4 33867429 33867476 -168460871 - L2 LINE L2 -221 3051 3004 635 332 43 38 chr4 33868361 33868756 -168459591 + LTR16B LTR ERVL 37 433 -31 26 30 0 0 chr4 33869030 33869063 -168459284 + AT_rich Low_complexity Low_complexity 1 33 0 224 214 0 0 chr4 33871247 33871303 -168457044 + (TAGA)n Simple_repeat Simple_repeat 3 58 0 484 277 89 31 chr4 33871742 33871957 -168456390 + MIR SINE MIR 4 225 -21 351 325 41 71 chr4 33874257 33874420 -168453927 + MIR3 SINE MIR 6 164 -44 1995 129 13 31 chr4 33874420 33874738 -168453609 - AluSx SINE Alu 0 312 1 351 325 41 71 chr4 33874738 33874771 -168453576 + MIR3 SINE MIR 164 196 -12 232 206 44 29 chr4 33875303 33875371 -168452976 + GA-rich Low_complexity Low_complexity 3 71 0 330 67 0 0 chr4 33875384 33875429 -168452918 + (GA)n Simple_repeat Simple_repeat 2 46 0 27 0 0 0 chr4 33875522 33875549 -168452798 + AT_rich Low_complexity Low_complexity 1 27 0 26 50 0 0 chr4 33876257 33876297 -168452050 + AT_rich Low_complexity Low_complexity 1 40 0 47 19 0 0 chr4 33876329 33876383 -168451964 + AT_rich Low_complexity Low_complexity 1 54 0 22 70 0 0 chr4 33877629 33877672 -168450675 + AT_rich Low_complexity Low_complexity 1 43 0 689 150 8 8 chr4 33878217 33878344 -168450003 - MER52A LTR ERV1 0 1755 1629 * 3499 208 163 34 chr4 33878342 33879340 -168449007 - MER52A LTR ERV1 -628 1127 1 380 138 0 25 chr4 33879908 33879988 -168448359 + (TCCC)n Simple_repeat Simple_repeat 2 79 0 750 81 24 8 chr4 33879989 33880113 -168448234 + (TTTC)n Simple_repeat Simple_repeat 4 129 0 787 170 18 118 chr4 33880113 33880520 -168447827 - AluJo SINE Alu 0 469 86 448 256 87 17 chr4 33880534 33880706 -168447641 + MLT1I LTR MaLR 226 409 0 3241 73 5 0 chr4 33881113 33881538 -168446809 - L1PA7 LINE L1 -11 6143 5717 387 320 50 23 chr4 33881939 33882158 -168446189 - HAL1 LINE L1 -1322 1185 961 535 353 83 9 chr4 33882232 33882569 -168445778 - HAL1 LINE L1 -1994 513 152 2390 88 0 0 chr4 33882715 33883020 -168445327 + AluY SINE Alu 3 307 -4 2068 131 3 3 chr4 33883036 33883342 -168445005 + AluSx SINE Alu 1 306 -6 288 205 71 94 chr4 33883342 33883469 -168444878 - L1MB8 LINE L1 -11 6167 6044 276 348 7 15 chr4 33883488 33883623 -168444724 + (TATG)n Simple_repeat Simple_repeat 2 135 0 252 0 0 0 chr4 33883803 33883831 -168444516 + (TG)n Simple_repeat Simple_repeat 1 28 0 357 226 0 49 chr4 33884584 33884686 -168443661 - L1MC4 LINE L1 -1339 6983 1996 198 224 0 0 chr4 33884686 33884735 -168443612 + (TA)n Simple_repeat Simple_repeat 2 50 0 21 71 0 0 chr4 33885152 33885194 -168443153 + AT_rich Low_complexity Low_complexity 1 42 0 209 328 75 52 chr4 33886134 33886268 -168442079 - L2 LINE L2 0 3272 3136 501 95 14 0 chr4 33886557 33886631 -168441716 + MADE1 DNA Mariner 1 75 -5 2214 112 0 0 chr4 33886767 33887063 -168441284 - AluSg SINE Alu -14 296 1 452 303 95 84 chr4 33887246 33887603 -168440744 + LTR67 LTR ERVL 146 506 -51 384 333 138 62 chr4 33888390 33888903 -168439444 - L2 LINE L2 -52 3261 2706 1899 332 57 20 chr4 33888938 33889090 -168439257 - L2 LINE L2 -1754 1560 1415 563 0 0 15 chr4 33889090 33889158 -168439189 + (TAAAA)n Simple_repeat Simple_repeat 1 67 0 1899 332 57 20 chr4 33889158 33889964 -168438383 - L2 LINE L2 -1899 1415 566 1920 176 78 24 chr4 33890622 33891032 -168437315 + MSTB1 LTR MaLR 1 432 0 1982 185 82 0 chr4 33891837 33892226 -168436121 - MSTA LTR MaLR 0 428 8 327 284 74 40 chr4 33892629 33892777 -168435570 + LTR16C LTR ERVL 85 237 -254 2158 197 36 24 chr4 33893144 33893641 -168434706 - MLT1D LTR MaLR 0 505 3 1307 146 27 0 chr4 33893792 33894012 -168434335 + AluJb SINE Alu 85 310 -2 647 173 17 11 chr4 33894378 33894557 -168433790 + (CA)n Simple_repeat Simple_repeat 1 180 0 1272 259 63 66 chr4 33896263 33896926 -168431421 + L1MC4 LINE L1 7112 7772 -270 291 85 0 0 chr4 33897383 33897430 -168430917 + (TTTTG)n Simple_repeat Simple_repeat 3 49 0 1962 106 9 44 chr4 33898046 33898367 -168429980 - AluSg SINE Alu 0 310 1 1976 169 46 33 chr4 33898515 33899048 -168429299 - MLT2A1 LTR ERVL -1 553 1 200 350 25 0 chr4 33899057 33899137 -168429210 + L2 LINE L2 2920 3001 -312 207 0 0 0 chr4 33899328 33899351 -168428996 + (T)n Simple_repeat Simple_repeat 1 23 0 408 341 22 39 chr4 33900134 33900313 -168428034 + MIR SINE MIR 80 255 -7 256 314 69 57 chr4 33901425 33901600 -168426747 - MIR SINE MIR -7 255 79 204 419 9 0 chr4 33901742 33901847 -168426500 - L2 LINE L2 -214 3058 2953 762 211 188 0 chr4 33903369 33903587 -168424760 + L1MC4 LINE L1 7415 7673 -369 233 272 26 9 chr4 33904046 33904160 -168424187 + T-rich Low_complexity Low_complexity 4 119 0 24 32 0 0 chr4 33904895 33904926 -168423421 + AT_rich Low_complexity Low_complexity 1 31 0 224 294 144 20 chr4 33905010 33905163 -168423184 - MIR SINE MIR 0 262 91 191 271 59 47 chr4 33905489 33905574 -168422773 + MIR SINE MIR 104 189 -73 22 103 0 0 chr4 33906392 33906470 -168421877 + AT_rich Low_complexity Low_complexity 1 78 0 248 316 13 0 chr4 33907289 33907365 -168420982 + MIR SINE MIR 180 256 -6 234 259 0 37 chr4 33908379 33908460 -168419887 + T-rich Low_complexity Low_complexity 2 79 0 375 23 0 0 chr4 33908726 33908770 -168419577 + (TG)n Simple_repeat Simple_repeat 1 44 0 180 0 0 0 chr4 33908771 33908791 -168419556 + (GA)n Simple_repeat Simple_repeat 1 20 0 395 248 92 34 chr4 33910711 33910851 -168417496 - MIR SINE MIR -63 145 19 374 289 160 13 chr4 33911180 33911336 -168417011 - MIR SINE MIR -13 249 71 2351 159 27 9 chr4 33911486 33911901 -168416446 - MSTA LTR MaLR -6 422 1 23 54 0 0 chr4 33912514 33912551 -168415796 + AT_rich Low_complexity Low_complexity 1 37 0 210 231 0 0 chr4 33912636 33912687 -168415660 + polypurine Low_complexity Low_complexity 1 51 0 225 0 0 0 chr4 33913120 33913145 -168415202 + (CA)n Simple_repeat Simple_repeat 2 26 0 1945 137 52 25 chr4 33913186 33913551 -168414796 + THE1C LTR MaLR 1 375 0 960 128 44 33 chr4 33913553 33913733 -168414614 + THE1C-int LTR MaLR 3 184 -1396 1963 187 30 32 chr4 33913953 33914386 -168413961 - MSTB1 LTR MaLR 0 432 1 360 0 0 0 chr4 33915158 33915198 -168413149 + (TG)n Simple_repeat Simple_repeat 2 41 0 222 239 15 0 chr4 33915198 33915265 -168413082 + (TA)n Simple_repeat Simple_repeat 2 69 0 24 32 0 0 chr4 33916648 33916679 -168411668 + AT_rich Low_complexity Low_complexity 1 31 0 3324 130 23 38 chr4 33916718 33917247 -168411100 + MER1A DNA MER1_type 1 521 -8 2231 98 0 13 chr4 33917542 33917848 -168410499 - AluSc SINE Alu -7 302 1 186 301 43 32 chr4 33917879 33917972 -168410375 - L2 LINE L2 -535 2779 2686 202 200 0 0 chr4 33918492 33918527 -168409820 - MIR SINE MIR -10 252 218 198 143 0 0 chr4 33919065 33919100 -168409247 + (GGA)n Simple_repeat Simple_repeat 2 36 0 266 197 26 0 chr4 34119597 34119673 -168208674 + CT-rich Low_complexity Low_complexity 4 81 0 582 217 17 0 chr4 34119673 34119793 -168208554 - AluSg/x SINE Alu 0 312 191 304 0 0 82 chr4 34119862 34119923 -168208424 + (TTCC)n Simple_repeat Simple_repeat 2 57 0 313 49 0 0 chr4 34119927 34119968 -168208379 + AluSg/x SINE Alu 196 236 -64 1157 144 6 17 chr4 34119972 34120153 -168208194 - AluSx SINE Alu -133 179 1 26 0 0 0 chr4 34120202 34120228 -168208119 + AT_rich Low_complexity Low_complexity 1 26 0 896 268 29 4 chr4 34120777 34121023 -168207324 - LTR40b LTR ERVL -181 281 30 1360 107 0 0 chr4 34121222 34121399 -168206948 + AluSg SINE Alu 1 177 -133 22 35 0 0 chr4 34121679 34121708 -168206639 + AT_rich Low_complexity Low_complexity 1 29 0 381 304 63 76 chr4 34121923 34122081 -168206266 + MLT1E LTR MaLR 203 358 -235 1177 201 78 39 chr4 34123378 34123662 -168204685 + AluJo SINE Alu 2 296 -6 21 36 0 0 chr4 34125141 34125169 -168203178 + AT_rich Low_complexity Low_complexity 1 28 0 2444 58 3 3 chr4 34125266 34125575 -168202772 - AluY SINE Alu -2 309 1 335 186 0 47 chr4 34125679 34125765 -168202582 - L1MCa LINE L1 -4359 2067 1986 323 267 0 11 chr4 34125703 34125793 -168202554 + L1MC4 LINE L1 6615 6703 -1339 * 25 31 0 0 chr4 34125943 34125975 -168202372 + AT_rich Low_complexity Low_complexity 1 32 0 2564 186 47 6 chr4 34126513 34127008 -168201339 + MLT2B2 LTR ERVL 1 515 0 1760 118 16 77 chr4 34128159 34128472 -168199875 + AluY SINE Alu 1 294 -17 23 0 0 0 chr4 34128744 34128767 -168199580 + AT_rich Low_complexity Low_complexity 1 23 0 2155 105 0 3 chr4 34128965 34129259 -168199088 + AluSg SINE Alu 1 293 -17 23 54 0 0 chr4 34129697 34129734 -168198613 + AT_rich Low_complexity Low_complexity 1 37 0 12115 110 17 13 chr4 34129734 34132433 -168195914 - L1PA8A LINE L1 -9 6122 3421 616 278 6 11 chr4 34132798 34132978 -168195369 - L1MC4 LINE L1 -1036 7006 6828 24 67 0 0 chr4 34133223 34133268 -168195079 + AT_rich Low_complexity Low_complexity 1 45 0 2115 110 0 3 chr4 34133342 34133656 -168194691 - AluY SINE Alu 0 313 1 28 29 0 0 chr4 34133890 34133925 -168194422 + AT_rich Low_complexity Low_complexity 1 35 0 212 0 36 0 chr4 34134451 34134479 -168193868 + (CA)n Simple_repeat Simple_repeat 2 30 0 3627 118 59 40 chr4 34134627 34135588 -168192759 + MER11A LTR ERVK 1 1071 0 2777 186 74 41 chr4 34135641 34136317 -168192030 + LTR8A LTR ERV1 30 727 0 2099 130 0 0 chr4 34137096 34137397 -168190950 - AluSg SINE Alu -8 302 2 362 324 165 10 chr4 34137812 34138217 -168190130 - MLT1J LTR MaLR -43 468 1 27 73 0 0 chr4 34138263 34138318 -168190029 + AT_rich Low_complexity Low_complexity 1 55 0 210 255 0 0 chr4 34138643 34138690 -168189657 + (AATAG)n Simple_repeat Simple_repeat 2 48 0 345 159 32 0 chr4 34138694 34138757 -168189590 + THE1C LTR MaLR 303 367 -8 300 27 0 0 chr4 34138779 34138816 -168189531 + (CA)n Simple_repeat Simple_repeat 1 37 0 240 185 31 77 chr4 34139289 34139354 -168188993 + tRNA-Met-e tRNA tRNA 1 62 -13 822 237 21 5 chr4 34140094 34140288 -168188059 + MER72 LTR ERV1 1 197 -525 2061 207 14 57 chr4 34140350 34140644 -168187703 + MER72 LTR ERV1 232 537 -185 1876 168 66 57 chr4 34140644 34141066 -168187281 + MSTB LTR MaLR 1 426 0 2061 207 14 57 chr4 34141066 34141210 -168187137 + MER72 LTR ERV1 537 647 -75 1987 162 9 17 chr4 34141210 34141556 -168186791 - MER61A LTR ERV1 0 343 1 2061 207 14 57 chr4 34141556 34141629 -168186718 + MER72 LTR ERV1 647 722 0 874 208 5 5 chr4 34141736 34141943 -168186404 - AluSq SINE Alu 0 313 107 5679 141 7 45 chr4 34142043 34143101 -168185246 - L1P3 LINE L1 -2951 3510 2494 * 7172 123 28 14 chr4 34143081 34144206 -168184141 - L1P3 LINE L1 -4734 1141 2 25 31 0 0 chr4 34144527 34144559 -168183788 + AT_rich Low_complexity Low_complexity 1 32 0 218 140 0 20 chr4 34145669 34145719 -168182628 + (TA)n Simple_repeat Simple_repeat 1 49 0 545 297 19 13 chr4 34146003 34146158 -168182189 - MLT1H LTR MaLR -329 220 65 7790 16 0 0 chr4 34146569 34147631 -168180716 - L1PA2 LINE L1 -6 6149 5088 285 179 74 53 chr4 34147787 34147882 -168180465 - L1MC4 LINE L1 -21 8021 7925 1013 296 113 39 chr4 34147990 34148949 -168179398 - L1MC4 LINE L1 -219 7823 6794 309 89 0 0 chr4 34149012 34149057 -168179290 + (CA)n Simple_repeat Simple_repeat 2 46 0 2022 134 0 3 chr4 34149144 34149435 -168178912 - AluSg SINE Alu -20 290 1 23 0 0 0 chr4 34149722 34149745 -168178602 + AT_rich Low_complexity Low_complexity 1 23 0 1410 266 127 12 chr4 34149828 34150395 -168177952 - L1MC4 LINE L1 -141 7901 7270 25 0 0 0 chr4 34151803 34151828 -168176519 + AT_rich Low_complexity Low_complexity 1 25 0 1060 260 4 0 chr4 34152192 34152434 -168175913 + MER89 LTR ERV1 317 559 0 369 0 0 0 chr4 34152813 34152854 -168175493 + (TA)n Simple_repeat Simple_repeat 2 42 0 899 220 73 5 chr4 34153097 34153288 -168175059 + AluJo SINE Alu 1 204 -108 2158 175 11 45 chr4 34153626 34154067 -168174280 - MSTB LTR MaLR 0 426 1 2067 172 22 0 chr4 34154089 34154444 -168173903 + THE1B LTR MaLR 2 364 0 24 77 0 0 chr4 34155221 34155273 -168173074 + AT_rich Low_complexity Low_complexity 1 52 0 237 174 0 22 chr4 34155519 34155565 -168172782 + MIR SINE MIR 100 144 -118 348 64 0 0 chr4 34155717 34155764 -168172583 + (TG)n Simple_repeat Simple_repeat 2 48 0 27 62 0 0 chr4 34158254 34158302 -168170045 + AT_rich Low_complexity Low_complexity 1 48 0 22 35 0 0 chr4 34158909 34158938 -168169409 + AT_rich Low_complexity Low_complexity 1 29 0 263 372 49 49 chr4 34159042 34159268 -168169079 - MIR SINE MIR -8 254 29 28 0 0 0 chr4 34159453 34159481 -168168866 + AT_rich Low_complexity Low_complexity 1 28 0 28 71 0 0 chr4 34160020 34160076 -168168271 + AT_rich Low_complexity Low_complexity 1 56 0 233 380 68 19 chr4 34161581 34161786 -168166561 + LTR16C LTR ERVL 160 374 -117 648 204 78 26 chr4 34162105 34162296 -168166051 - MER2 DNA MER2_type -144 201 1 2086 183 17 15 chr4 34162758 34163203 -168165144 + L1MA4 LINE L1 5824 6272 -28 1736 176 64 14 chr4 34163203 34163560 -168164787 + THE1C LTR MaLR 1 375 0 2086 183 17 15 chr4 34163560 34163578 -168164769 + L1MA4 LINE L1 6272 6288 -12 1615 187 78 36 chr4 34164105 34164516 -168163831 - MSTA LTR MaLR 0 428 1 7964 205 17 41 chr4 34164516 34166005 -168162342 - THE1C-int LTR MaLR 0 1651 205 1984 164 24 32 chr4 34166005 34166383 -168161964 - THE1C LTR MaLR 0 375 1 7964 205 17 41 chr4 34166383 34166583 -168161764 - THE1C-int LTR MaLR -1446 205 2 1499 171 196 19 chr4 34166585 34166948 -168161399 - MSTA LTR MaLR -1 427 1 279 409 43 16 chr4 34167079 34167382 -168160965 - L2 LINE L2 -337 2977 2667 369 315 179 14 chr4 34167387 34167739 -168160608 - L2 LINE L2 -993 2321 1912 1637 209 0 0 chr4 34167740 34168051 -168160296 + AluJb SINE Alu 1 311 -1 23 78 0 0 chr4 34168775 34168826 -168159521 + AT_rich Low_complexity Low_complexity 1 51 0 1417 194 43 17 chr4 34170057 34170356 -168157991 + AluJo SINE Alu 1 307 -5 26 30 0 0 chr4 34170547 34170580 -168157767 + AT_rich Low_complexity Low_complexity 1 33 0 1986 127 0 3 chr4 34170987 34171279 -168157068 + AluSq SINE Alu 1 291 -22 516 264 94 34 chr4 34171544 34171926 -168156421 + L1ME2 LINE L1 731 1135 -5261 256 266 39 39 chr4 34172166 34172294 -168156053 + L1ME2 LINE L1 4816 4943 -1272 * 2399 257 66 14 chr4 34172293 34173240 -168155107 + L1ME2 LINE L1 5183 6180 -53 23 78 0 0 chr4 34173312 34173363 -168154984 + AT_rich Low_complexity Low_complexity 1 51 0 23 0 0 0 chr4 34173719 34173742 -168154605 + AT_rich Low_complexity Low_complexity 1 23 0 1802 97 14 21 chr4 34173766 34174055 -168154292 - L1PB2 LINE L1 -7 6144 5858 1617 304 52 31 chr4 34174055 34174440 -168153907 + L1P5 LINE L1 5273 5665 -489 27 49 0 0 chr4 34176276 34176317 -168152030 + AT_rich Low_complexity Low_complexity 1 41 0 246 264 0 57 chr4 34176567 34176673 -168151674 + L1MEd LINE L1 55 154 -5965 275 347 26 89 chr4 34176980 34177363 -168150984 + MER115 DNA AcHobo 95 453 -240 615 223 78 0 chr4 34177765 34177958 -168150389 + MER58B DNA MER1_type 48 255 -86 1322 256 75 7 chr4 34178017 34178451 -168149896 + MER110A LTR ERV1 41 486 0 526 200 0 0 chr4 34178458 34178548 -168149799 + MER58B DNA MER1_type 252 341 0 1520 195 25 57 chr4 34179001 34179453 -168148894 - MER89 LTR ERV1 0 559 24 213 132 0 0 chr4 34180173 34180211 -168148136 + (A)n Simple_repeat Simple_repeat 1 38 0 25 0 0 0 chr4 34180660 34180685 -168147662 + AT_rich Low_complexity Low_complexity 1 25 0 192 40 0 0 chr4 34181129 34181154 -168147193 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2340 119 13 21 chr4 34181780 34182158 -168146189 - THE1C LTR MaLR 0 375 1 24 0 0 0 chr4 34182320 34182344 -168146003 + AT_rich Low_complexity Low_complexity 1 24 0 297 218 0 0 chr4 34182627 34182705 -168145642 + (TA)n Simple_repeat Simple_repeat 1 78 0 2457 236 68 7 chr4 34182731 34183346 -168145001 + MER82 DNA MER2_type 1 653 0 27 81 0 0 chr4 34183572 34183634 -168144713 + AT_rich Low_complexity Low_complexity 1 62 0 931 283 35 38 chr4 34183878 34184224 -168144123 + L1MDa LINE L1 289 633 -5907 767 116 14 14 chr4 34184270 34184416 -168143931 + (GAA)n Simple_repeat Simple_repeat 3 148 0 1856 146 7 0 chr4 34184420 34184723 -168143624 + AluSg SINE Alu 1 305 0 261 0 0 0 chr4 34184747 34184776 -168143571 + (TAA)n Simple_repeat Simple_repeat 2 30 0 2347 224 103 38 chr4 34184804 34185761 -168142586 + L1MD1 LINE L1 4967 5992 -250 892 230 73 61 chr4 34185903 34186288 -168142059 + MLT1E LTR MaLR 94 593 0 1694 233 14 3 chr4 34186292 34186653 -168141694 - MLT1A1 LTR MaLR 0 365 1 30 45 0 0 chr4 34188352 34188396 -168139951 + AT_rich Low_complexity Low_complexity 1 44 0 721 125 0 0 chr4 34188396 34188508 -168139839 - L1PB1 LINE L1 -1 6150 6039 22 0 0 0 chr4 34188526 34188548 -168139799 + AT_rich Low_complexity Low_complexity 1 22 0 1058 295 91 23 chr4 34188720 34189238 -168139109 - MLT1H1 LTR MaLR 0 555 3 27 62 0 0 chr4 34189497 34189545 -168138802 + AT_rich Low_complexity Low_complexity 1 48 0 22 0 0 0 chr4 34189635 34189657 -168138690 + AT_rich Low_complexity Low_complexity 1 22 0 234 250 19 0 chr4 34190360 34190412 -168137935 - MIR3 SINE MIR -30 178 126 384 22 0 0 chr4 34191112 34191120 -168137227 + (TG)n Simple_repeat Simple_repeat 1 53 0 384 22 0 0 chr4 34191120 34191165 -168137182 + (TG)n Simple_repeat Simple_repeat 1 45 0 208 322 102 45 chr4 34191249 34191426 -168136921 + MIR SINE MIR 2 188 -74 260 371 43 7 chr4 34191992 34192132 -168136215 - L2 LINE L2 0 3313 3169 4656 140 76 77 chr4 34192405 34193992 -168134355 - pTR5 LTR ERV1 0 2438 68 30 0 0 0 chr4 34194616 34194646 -168133701 + AT_rich Low_complexity Low_complexity 1 30 0 1192 233 30 81 chr4 34194901 34195335 -168133012 - MER39 LTR ERV1 -1 706 295 37 62 0 0 chr4 34196493 34196558 -168131789 + AT_rich Low_complexity Low_complexity 1 65 0 434 137 38 44 chr4 34196602 34197006 -168131341 + (CATATA)n Simple_repeat Simple_repeat 1 401 0 24 0 0 0 chr4 34197581 34197605 -168130742 + AT_rich Low_complexity Low_complexity 1 24 0 3538 238 45 67 chr4 34197816 34199257 -168129090 + L1M4 LINE L1 3884 5293 -853 224 0 0 61 chr4 34199591 34199624 -168128723 + (TATG)n Simple_repeat Simple_repeat 2 32 0 1882 117 3 43 chr4 34199818 34200149 -168128198 - AluSg SINE Alu 0 310 10 235 213 0 0 chr4 34200159 34200206 -168128141 + GA-rich Low_complexity Low_complexity 1 47 0 845 95 27 7 chr4 34200209 34200356 -168127991 + (GGAA)n Simple_repeat Simple_repeat 3 152 0 243 343 0 0 chr4 34200805 34200875 -168127472 - L2 LINE L2 -17 3296 3227 418 308 53 68 chr4 34204422 34204688 -168123659 + L2 LINE L2 3047 3308 -5 227 178 0 22 chr4 34204804 34204860 -168123487 + GA-rich Low_complexity Low_complexity 1 54 0 25 35 0 52 chr4 34205777 34205835 -168122512 + AT_rich Low_complexity Low_complexity 1 55 0 1924 125 3 26 chr4 34206007 34206333 -168122014 - AluSx SINE Alu 0 312 1 1103 252 88 53 chr4 34206354 34206842 -168121505 + MLT1D LTR MaLR 1 505 0 24 103 0 0 chr4 34207072 34207159 -168121188 + AT_rich Low_complexity Low_complexity 1 87 0 1706 244 101 78 chr4 34207322 34207954 -168120393 + MLT1E1 LTR MaLR 1 647 -7 4680 224 34 1 chr4 34208019 34208961 -168119386 - HERVL-C2 LTR ERVL -3328 2436 1464 498 93 93 0 chr4 34208961 34209036 -168119311 - MSTC LTR MaLR -346 82 1 261 232 37 24 chr4 34209038 34209120 -168119227 - HERVL-C2 LTR ERVL -5569 85 3 1152 179 12 135 chr4 34209128 34209469 -168118878 - MLT2C2 LTR ERVL -6 458 160 21 36 0 0 chr4 34209871 34209899 -168118448 + AT_rich Low_complexity Low_complexity 1 28 0 2383 191 21 48 chr4 34210493 34211016 -168117331 - MER67D LTR ERV1 -5 509 1 183 42 0 0 chr4 34211205 34211229 -168117118 + (CTA)n Simple_repeat Simple_repeat 3 26 0 4222 125 3 2 chr4 34211587 34212221 -168116126 + MER41B LTR ERV1 1 635 0 3185 176 67 3 chr4 34212295 34212904 -168115443 - MER39B LTR ERV1 0 653 6 315 373 66 13 chr4 34213053 34213281 -168115066 - MIR SINE MIR -1 261 22 21 0 0 0 chr4 34213328 34213349 -168114998 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr4 34213830 34213858 -168114489 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr4 34214487 34214512 -168113835 + AT_rich Low_complexity Low_complexity 1 25 0 2031 142 0 7 chr4 34215248 34215558 -168112789 + AluSx SINE Alu 1 308 -4 279 148 33 33 chr4 34215760 34215821 -168112526 + LTR8 LTR ERV1 327 387 -304 1916 201 49 51 chr4 34215867 34216334 -168112013 + MLT1D LTR MaLR 40 505 0 539 373 93 27 chr4 34216594 34217226 -168111121 - L2 LINE L2 -426 2888 2215 1076 290 263 14 chr4 34217248 34217872 -168110475 - L2 LINE L2 -504 2810 2032 237 318 78 23 chr4 34218010 34218139 -168110208 + L2 LINE L2 2398 2533 -781 2246 93 7 3 chr4 34218378 34218688 -168109659 - AluSq SINE Alu -2 311 1 21 0 0 0 chr4 34219676 34219697 -168108650 + AT_rich Low_complexity Low_complexity 1 21 0 900 140 30 18 chr4 34220157 34220321 -168108026 - LTR49 LTR ERV1 -3 592 427 240 35 0 0 chr4 34220321 34220350 -168107997 + (CA)n Simple_repeat Simple_repeat 2 30 0 283 237 11 0 chr4 34220352 34220529 -168107818 + (TA)n Simple_repeat Simple_repeat 2 180 0 2799 133 9 0 chr4 34220558 34220987 -168107360 - LTR49 LTR ERV1 -162 433 1 1803 330 51 72 chr4 34222219 34224627 -168103720 - LTR49-int LTR ERV1 -67 7055 4699 464 345 47 34 chr4 34225022 34225468 -168102879 - LTR49-int LTR ERV1 -2811 4311 3860 4160 164 17 4 chr4 34226242 34226944 -168101403 + MER50 LTR ERV1 1 711 -23 21 0 0 0 chr4 34227043 34227064 -168101283 + AT_rich Low_complexity Low_complexity 1 21 0 702 338 193 13 chr4 34227064 34227593 -168100754 + L2 LINE L2 1020 1643 -1671 298 173 19 0 chr4 34227613 34227665 -168100682 - LTR49 LTR ERV1 0 595 543 2443 147 53 32 chr4 34227776 34228022 -168100325 - LTR49 LTR ERV1 -110 485 223 2073 103 3 44 chr4 34228022 34228341 -168100006 - AluSg1 SINE Alu -3 306 1 2443 147 53 32 chr4 34228341 34228563 -168099784 - LTR49 LTR ERV1 -372 223 7 547 313 122 7 chr4 34228574 34228862 -168099485 + L2 LINE L2 2308 2628 -686 1500 145 4 0 chr4 34228862 34229090 -168099257 - MER4E LTR ERV1 0 779 551 205 370 58 19 chr4 34229127 34229281 -168099066 - L2 LINE L2 -575 2739 2580 3966 144 65 36 chr4 34229706 34229954 -168098393 - MER4D LTR ERV1 -28 875 636 2524 56 0 3 chr4 34229954 34230258 -168098089 + AluY SINE Alu 1 303 -8 3966 144 65 36 chr4 34230258 34230504 -168097843 - MER4D LTR ERV1 -267 636 399 3282 161 18 82 chr4 34230504 34231196 -168097151 - LTR8 LTR ERV1 0 691 48 2136 91 10 17 chr4 34231196 34231494 -168096853 - AluSc SINE Alu -13 296 1 3282 161 18 82 chr4 34231494 34231540 -168096807 - LTR8 LTR ERV1 -643 48 1 3966 144 65 36 chr4 34231540 34231813 -168096534 - MER4D LTR ERV1 -504 399 85 271 321 157 52 chr4 34231849 34232171 -168096176 + L2 LINE L2 2741 3126 -187 243 0 0 0 chr4 34232171 34232198 -168096149 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 271 321 157 52 chr4 34232198 34232270 -168096077 + L2 LINE L2 3126 3189 -124 262 183 43 139 chr4 34232302 34232417 -168095930 - MER101B LTR ERV1 0 570 467 544 333 32 0 chr4 34232776 34232995 -168095352 - Charlie1a DNA MER1_type -1228 227 2 1423 196 20 119 chr4 34233065 34233469 -168094878 - MLT1A1 LTR MaLR -1 364 1 1144 85 32 113 chr4 34233784 34234031 -168094316 + L1MA3 LINE L1 6076 6302 -3 29 47 0 0 chr4 34234162 34234205 -168094142 + AT_rich Low_complexity Low_complexity 1 43 0 188 235 15 0 chr4 34234352 34234420 -168093927 + (TA)n Simple_repeat Simple_repeat 1 69 0 25 31 0 0 chr4 34234420 34234452 -168093895 + AT_rich Low_complexity Low_complexity 1 32 0 311 315 103 6 chr4 34234803 34235114 -168093233 - Charlie7 DNA MER1_type -273 2339 1999 25 0 0 0 chr4 34235255 34235280 -168093067 + AT_rich Low_complexity Low_complexity 1 25 0 1989 151 0 3 chr4 34235379 34235691 -168092656 + AluSx SINE Alu 2 312 0 1249 62 6 6 chr4 34235691 34235738 -168092609 + (GAAA)n Simple_repeat Simple_repeat 1 224 0 1249 62 6 6 chr4 34235738 34235915 -168092432 + (GAAA)n Simple_repeat Simple_repeat 4 180 0 25 31 0 0 chr4 34236233 34236265 -168092082 + AT_rich Low_complexity Low_complexity 1 32 0 483 272 16 33 chr4 34236572 34236756 -168091591 - Charlie7 DNA MER1_type -922 1690 1510 548 284 117 47 chr4 34237151 34237468 -168090879 + HAL1 LINE L1 133 471 -2036 517 354 87 30 chr4 34237886 34238313 -168090034 + MLT1J LTR MaLR 5 455 -56 574 278 18 18 chr4 34238507 34238676 -168089671 - L1MD3 LINE L1 -1115 6880 6712 1209 274 24 75 chr4 34238682 34239229 -168089118 + MER34 LTR ERV1 3 521 -21 236 209 77 66 chr4 34239232 34239323 -168089024 - L1MC4 LINE L1 -1279 6763 6672 3606 293 56 38 chr4 34239770 34243009 -168085338 - L1PBa LINE L1 -3456 3406 40 39 0 0 0 chr4 34243277 34243316 -168085031 + AT_rich Low_complexity Low_complexity 1 39 0 345 293 83 35 chr4 34243554 34243902 -168084445 + HAL1b LINE L1 566 930 -418 344 297 59 0 chr4 34244116 34244217 -168084130 + MSTC LTR MaLR 1 107 -321 271 167 133 0 chr4 34244263 34244323 -168084024 + MSTD LTR MaLR 329 396 0 571 241 49 37 chr4 34244328 34244490 -168083857 + MSTD-int LTR MaLR 62 225 -1510 5527 212 27 23 chr4 34244666 34245162 -168083185 - L1MCa LINE L1 -5072 1354 862 186 43 0 0 chr4 34245162 34245185 -168083162 + (TG)n Simple_repeat Simple_repeat 2 24 0 5527 212 27 23 chr4 34245185 34246001 -168082346 - L1MCa LINE L1 -5564 862 36 242 327 71 26 chr4 34246045 34246158 -168082189 - L2 LINE L2 -21 3292 3175 4669 234 23 18 chr4 34246527 34248215 -168080132 - L1PA15-16 LINE L1 -3275 4309 2614 537 337 53 26 chr4 34248584 34248961 -168079386 - L1PA15-16 LINE L1 -7188 393 7 268 250 0 0 chr4 34250051 34250119 -168078228 - MER4-int LTR ERV1 -5419 1179 1112 458 239 8 0 chr4 34250152 34250286 -168078061 + (TATATG)n Simple_repeat Simple_repeat 4 138 0 311 309 85 35 chr4 34250452 34250653 -168077694 - LTR16C LTR ERVL -9 482 272 553 247 22 16 chr4 34251073 34251255 -168077092 + LTR43 LTR ERV1 154 336 -266 829 236 68 71 chr4 34251317 34251518 -168076829 + LTR40a LTR ERVL 199 399 -120 2216 152 8 16 chr4 34251518 34251894 -168076453 - THE1C LTR MaLR 0 375 3 9216 142 41 10 chr4 34251896 34253428 -168074919 - THE1C-int LTR MaLR 0 1580 1 2355 116 24 19 chr4 34253428 34253799 -168074548 - THE1C LTR MaLR 0 375 3 829 236 68 71 chr4 34253799 34253915 -168074432 + LTR40a LTR ERVL 398 519 0 277 130 65 51 chr4 34254628 34254766 -168073581 + (TA)n Simple_repeat Simple_repeat 2 141 0 2044 56 0 8 chr4 34254977 34255226 -168073121 + AluY SINE Alu 1 247 -64 322 0 0 0 chr4 34255226 34255262 -168073085 - THE1B LTR MaLR -326 38 3 337 111 37 0 chr4 34255266 34255320 -168073027 + AluY SINE Alu 248 303 -5 1854 143 11 0 chr4 34255548 34255821 -168072526 + AluSx SINE Alu 1 276 -36 1332 308 77 23 chr4 34255868 34256628 -168071719 + L1M2a LINE L1 7 958 -6210 689 258 87 35 chr4 34256686 34256915 -168071432 + L1M2a LINE L1 1744 1984 -5184 * 5163 174 31 19 chr4 34256911 34258320 -168070027 + L1MA6 LINE L1 4861 6298 -2 2010 145 3 6 chr4 34258330 34258616 -168069731 + AluSx SINE Alu 1 287 -25 489 17 0 0 chr4 34258616 34258674 -168069673 + (TAGA)n Simple_repeat Simple_repeat 1 58 0 2010 145 3 6 chr4 34258674 34258698 -168069649 + AluSx SINE Alu 287 310 -2 198 350 34 17 chr4 34260262 34260379 -168067968 - L2 LINE L2 -4 3309 3191 2091 136 25 35 chr4 34261968 34262336 -168066011 + THE1B LTR MaLR 1 364 0 363 125 0 0 chr4 34262336 34262392 -168065955 + THE1B-int LTR MaLR 1 56 -1524 * 7557 125 1 10 chr4 34262389 34263490 -168064857 + THE1B-int LTR MaLR 489 1579 -1 2197 128 19 25 chr4 34263490 34263856 -168064491 + THE1B LTR MaLR 1 364 0 213 333 58 29 chr4 34264107 34264245 -168064102 - MIR3 SINE MIR -48 160 19 254 167 0 0 chr4 34264907 34264943 -168063404 + LTR16A1 LTR ERVL 410 445 -12 186 71 0 0 chr4 34265051 34265079 -168063268 + (TTA)n Simple_repeat Simple_repeat 3 30 0 1481 209 84 29 chr4 34265253 34265597 -168062750 - MLT1A1 LTR MaLR -2 363 1 183 318 0 0 chr4 34265726 34265770 -168062577 + L2 LINE L2 3222 3265 -7 195 368 0 0 chr4 34265984 34266060 -168062287 - L2 LINE L2 -3 3269 3194 23 0 0 0 chr4 34266502 34266525 -168061822 + AT_rich Low_complexity Low_complexity 1 23 0 26 30 0 0 chr4 34268261 34268294 -168060053 + AT_rich Low_complexity Low_complexity 1 33 0 687 255 33 11 chr4 34268422 34268606 -168059741 + MER5A DNA MER1_type 2 189 0 237 198 151 38 chr4 34268965 34269071 -168059276 + L1MA5A LINE L1 6050 6167 -130 374 210 8 25 chr4 34269072 34269191 -168059156 + L1MA3 LINE L1 6189 6305 0 1627 175 13 58 chr4 34269313 34269690 -168058657 - MER46B DNA MER2_type 0 236 2 1410 236 13 3 chr4 34270246 34270555 -168057792 - AluJo SINE Alu 0 312 1 1922 141 45 45 chr4 34270676 34270865 -168057482 - THE1C LTR MaLR 0 375 184 2392 100 0 0 chr4 34270865 34271176 -168057171 + AluY SINE Alu 1 311 0 1922 141 45 45 chr4 34271176 34271361 -168056986 - THE1C LTR MaLR -190 185 1 217 204 0 0 chr4 34272689 34272703 -168055644 + (CATATA)n Simple_repeat Simple_repeat 6 19 -30 1864 140 0 33 chr4 34272703 34273003 -168055344 + AluSx SINE Alu 1 290 -22 217 204 0 0 chr4 34273003 34273032 -168055315 + (CATATA)n Simple_repeat Simple_repeat 18 49 0 23 0 0 0 chr4 34273511 34273534 -168054813 + AT_rich Low_complexity Low_complexity 1 23 0 996 144 12 6 chr4 34274044 34274204 -168054143 + AluSg/x SINE Alu 139 299 -11 813 208 25 0 chr4 34274372 34274531 -168053816 + MER6 DNA MER2_type 361 523 -342 3427 150 12 37 chr4 34274535 34274769 -168053578 - L1PA16 LINE L1 -8 6158 5920 2422 54 0 17 chr4 34274769 34275096 -168053251 - AluY SINE Alu 0 311 1 3427 150 12 37 chr4 34275096 34275509 -168052838 - L1PA16 LINE L1 -246 5920 5527 972 176 40 30 chr4 34276051 34276250 -168052097 + MER2 DNA MER2_type 1 201 -144 566 307 21 50 chr4 34276572 34276855 -168051492 + LTR16B LTR ERVL 147 421 -43 2097 150 16 22 chr4 34276881 34277247 -168051100 - THE1B LTR MaLR 0 364 1 27 0 0 0 chr4 34278202 34278229 -168050118 + AT_rich Low_complexity Low_complexity 1 27 0 337 310 46 77 chr4 34379171 34379432 -167948915 + L2 LINE L2 3020 3272 0 347 235 13 74 chr4 34379697 34379846 -167948501 + MLT1K LTR MaLR 434 573 -15 2340 75 3 0 chr4 34379848 34380142 -167948205 - AluSp SINE Alu -18 295 1 691 175 39 19 chr4 34380155 34380309 -167948038 - L1MB8 LINE L1 -1 6177 6021 2096 122 3 0 chr4 34380310 34380606 -167947741 + AluJb SINE Alu 2 298 -14 394 236 16 8 chr4 34380615 34380738 -167947609 + GA-rich Low_complexity Low_complexity 4 127 0 2109 228 45 19 chr4 34380742 34381320 -167947027 - L1MB7 LINE L1 -152 6032 5440 919 177 11 120 chr4 34381527 34381748 -167946599 - L1MB7 LINE L1 -717 5466 5306 2239 81 20 0 chr4 34381748 34382043 -167946304 - AluY SINE Alu -10 301 1 919 177 11 120 chr4 34382043 34382229 -167946118 - L1MB7 LINE L1 -877 5306 5101 460 241 30 0 chr4 34383142 34383270 -167945077 + MIR SINE MIR 22 152 -60 243 380 134 0 chr4 34383784 34383926 -167944421 + MIR SINE MIR 32 192 -70 360 0 0 0 chr4 34383994 34384034 -167944313 + (TG)n Simple_repeat Simple_repeat 2 41 0 426 157 124 0 chr4 34384182 34384271 -167944076 - MER5A DNA MER1_type -80 109 10 2550 58 0 3 chr4 34384914 34385226 -167943121 - AluY SINE Alu 0 311 1 265 250 15 0 chr4 34385247 34385315 -167943032 + MER116 DNA Mariner 7 75 -5 507 270 54 14 chr4 34385869 34386091 -167942256 - LTR52 LTR ERVL -125 296 66 2117 135 3 0 chr4 34386572 34386883 -167941464 - AluSx SINE Alu 0 312 1 1422 275 88 8 chr4 34387217 34387741 -167940606 + MLT1F1 LTR MaLR 2 567 0 190 259 198 9 chr4 34388211 34388327 -167940020 + MIR SINE MIR 28 165 -97 1040 142 16 16 chr4 34388678 34388861 -167939486 - AluJb SINE Alu 0 312 130 1602 234 66 49 chr4 34388865 34389398 -167938949 - L1MB5 LINE L1 -51 6123 5582 251 254 42 0 chr4 34389705 34389776 -167938571 + LTR16C LTR ERVL 144 217 -274 272 240 47 23 chr4 34389862 34389991 -167938356 + LTR16C LTR ERVL 360 491 0 186 43 0 0 chr4 34390172 34390195 -167938152 + (TG)n Simple_repeat Simple_repeat 2 24 0 249 261 0 0 chr4 34390359 34390447 -167937900 + (TG)n Simple_repeat Simple_repeat 1 88 0 714 302 29 0 chr4 34390465 34390670 -167937677 - MIR SINE MIR -16 246 36 462 298 147 11 chr4 34391591 34391870 -167936477 + L1ME3A LINE L1 5829 6145 -25 820 268 84 9 chr4 34392412 34392733 -167935614 + MLT1J2 LTR MaLR 1 345 -105 2080 126 3 0 chr4 34393040 34393334 -167935013 + AluSx SINE Alu 2 296 -16 1911 157 3 10 chr4 34393462 34393775 -167934572 - AluJo SINE Alu -1 311 1 2278 106 0 0 chr4 34394169 34394480 -167933867 + AluSx SINE Alu 1 311 -1 707 146 0 0 chr4 34394542 34394652 -167933695 - AluSp/q SINE Alu -15 298 189 1314 25 0 0 chr4 34395083 34395240 -167933107 + L1PA5 LINE L1 5998 6154 0 180 158 26 0 chr4 34395289 34395327 -167933020 + MIR SINE MIR 81 119 -89 2168 105 0 10 chr4 34395430 34395734 -167932613 - AluSx SINE Alu -11 301 1 1358 191 39 21 chr4 34395736 34396018 -167932329 - AluJb SINE Alu -25 287 1 2201 82 0 63 chr4 34396399 34396715 -167931632 + AluSx SINE Alu 1 296 -16 1206 181 54 73 chr4 34396921 34397275 -167931072 + MLT1B LTR MaLR 44 390 0 23 0 0 0 chr4 34397662 34397685 -167930662 + AT_rich Low_complexity Low_complexity 1 23 0 1061 209 27 9 chr4 34397934 34398154 -167930193 - MER58A DNA MER1_type 0 224 1 253 290 50 20 chr4 34398222 34398322 -167930025 + MIR SINE MIR 20 122 -140 1505 154 27 8 chr4 34398925 34399184 -167929163 + AluJo SINE Alu 46 309 -3 2124 99 20 0 chr4 34399186 34399479 -167928868 + AluSx SINE Alu 1 299 -13 762 207 39 20 chr4 34399481 34399638 -167928709 + L1MA10 LINE L1 6128 6291 -43 1996 140 0 3 chr4 34399638 34399930 -167928417 - AluSx SINE Alu -21 291 1 762 207 39 20 chr4 34399930 34399975 -167928372 + L1MA10 LINE L1 6291 6334 0 646 296 107 46 chr4 34400046 34400075 -167928272 - MER20B DNA MER1_type -2 781 755 1658 36 0 0 chr4 34400075 34400268 -167928079 - AluY SINE Alu -14 297 105 646 296 107 46 chr4 34400268 34400808 -167927539 - MER20B DNA MER1_type -28 755 177 339 368 52 0 chr4 34400954 34401128 -167927219 + MIR SINE MIR 21 203 -59 2067 110 0 36 chr4 34401316 34401624 -167926723 + AluSx SINE Alu 1 297 -15 281 304 54 18 chr4 34402300 34402412 -167925935 - L2 LINE L2 0 3272 3157 259 296 67 7 chr4 34402676 34402811 -167925536 - MIR3 SINE MIR -21 187 45 2325 207 77 10 chr4 34403644 34404244 -167924103 + L1MB8 LINE L1 5538 6177 -1 1547 264 70 37 chr4 34404259 34404680 -167923667 + L1ME3A LINE L1 5501 5907 -263 2551 50 0 0 chr4 34404680 34404983 -167923364 - AluY SINE Alu -8 303 1 2148 134 0 0 chr4 34404983 34405289 -167923058 - AluSx SINE Alu -6 306 1 1547 264 70 37 chr4 34405289 34405507 -167922840 + L1ME3A LINE L1 5906 6162 -8 2472 62 0 0 chr4 34405521 34405826 -167922521 + AluY SINE Alu 1 305 -6 2242 114 0 3 chr4 34405852 34406158 -167922189 + AluSg SINE Alu 1 305 -5 1011 257 110 13 chr4 34406169 34406543 -167921804 + L1MB7 LINE L1 5721 6130 -54 383 308 103 37 chr4 34406667 34406720 -167921627 - MIR SINE MIR -14 248 200 2025 165 122 38 chr4 34406720 34407069 -167921278 - MSTC LTR MaLR 0 428 41 2345 78 7 10 chr4 34407069 34407377 -167920970 + AluSp SINE Alu 1 307 -6 2025 165 122 38 chr4 34407377 34407422 -167920925 - MSTC LTR MaLR -387 41 1 383 308 103 37 chr4 34407422 34407582 -167920765 - MIR SINE MIR -62 200 21 345 47 0 0 chr4 34407837 34407880 -167920467 + (CA)n Simple_repeat Simple_repeat 2 44 0 371 265 205 0 chr4 34407972 34408123 -167920224 - MIR SINE MIR -74 188 7 1425 245 19 13 chr4 34408655 34409027 -167919320 + MLT2D LTR ERVL 1 374 -40 542 237 5 9 chr4 34409027 34409810 -167918537 + (CA)n Simple_repeat Simple_repeat 1 780 0 252 188 0 0 chr4 34409816 34409864 -167918483 + MLT2D LTR ERVL 350 397 0 2043 119 0 7 chr4 34409987 34410297 -167918050 + AluSx SINE Alu 1 308 0 395 282 29 58 chr4 34410372 34410546 -167917801 + MIR SINE MIR 80 248 -14 237 349 7 72 chr4 34410583 34410634 -167917713 + MER5A DNA MER1_type 26 79 -110 2298 92 3 0 chr4 34410634 34410937 -167917410 + AluSp SINE Alu 1 304 -9 237 349 7 72 chr4 34410937 34411037 -167917310 + MER5A DNA MER1_type 79 167 -22 248 289 31 39 chr4 34412533 34412661 -167915686 + (CCCCAG)n Simple_repeat Simple_repeat 6 132 0 219 389 87 0 chr4 34413407 34413533 -167914814 - MIR SINE MIR -9 253 117 808 242 24 9 chr4 34413765 34413976 -167914371 + MER20 DNA MER1_type 6 219 0 308 235 0 82 chr4 34414002 34414100 -167914247 - L3 LINE CR1 -73 1504 1415 755 201 6 0 chr4 34414542 34414716 -167913631 + (TGGA)n Simple_repeat Simple_repeat 4 178 0 885 168 0 0 chr4 34414734 34414913 -167913434 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 417 320 30 0 chr4 34415000 34415142 -167913205 - MIR SINE MIR -62 146 5 200 354 25 13 chr4 34415355 34415434 -167912913 - L2 LINE L2 -42 3271 3192 568 227 155 0 chr4 34415476 34415670 -167912677 - Charlie4 DNA MER1_type 0 1961 1738 364 283 109 22 chr4 34415737 34415875 -167912472 + MIR SINE MIR 15 164 -98 260 282 64 0 chr4 34416007 34416085 -167912262 - Charlie4 DNA MER1_type -1863 98 16 1996 141 16 0 chr4 34417158 34417462 -167910885 + AluJb SINE Alu 4 312 0 221 0 0 33 chr4 34417728 34417758 -167910589 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 286 347 46 38 chr4 34417770 34418032 -167910315 - L1ME4a LINE L1 -3 6118 5855 404 313 28 17 chr4 34418838 34419017 -167909330 - L1ME4a LINE L1 -287 5834 5654 2337 81 0 7 chr4 34419106 34419413 -167908934 + AluY SINE Alu 1 305 -6 1777 158 118 9 chr4 34419490 34419819 -167908528 - MLT1A1 LTR MaLR 0 365 1 1880 141 0 3 chr4 34419915 34420198 -167908149 + AluSx SINE Alu 1 344 0 472 48 0 0 chr4 34420198 34420260 -167908087 + (TAAA)n Simple_repeat Simple_repeat 2 116 0 390 265 173 6 chr4 34420975 34421137 -167907210 - MIR SINE MIR -18 244 56 432 199 99 38 chr4 34421502 34421633 -167906714 - MLT1C LTR MaLR -12 455 317 969 220 72 0 chr4 34421803 34422026 -167906321 - MLT1C LTR MaLR -198 269 31 1851 158 0 0 chr4 34422026 34422324 -167906023 - AluJb SINE Alu -14 298 1 461 319 3 14 chr4 34423309 34423674 -167904673 + (CA)n Simple_repeat Simple_repeat 1 360 0 392 355 8 14 chr4 34423431 34423794 -167904553 + (CACG)n Simple_repeat Simple_repeat 1 360 0 * 328 355 125 9 chr4 34423931 34424144 -167904203 - L1ME1 LINE L1 -234 5936 5694 1897 146 0 0 chr4 34424442 34424874 -167903473 - AluSx SINE Alu 0 432 1 326 313 62 20 chr4 34424875 34425179 -167903168 - L1ME1 LINE L1 -821 5325 5009 240 314 15 11 chr4 34425506 34425600 -167902747 + MIR SINE MIR 16 111 -97 1817 259 92 20 chr4 34427074 34427569 -167900778 + MLT1E LTR MaLR 1 542 -51 1480 188 19 26 chr4 34427569 34427877 -167900470 - AluJo SINE Alu -6 306 1 1817 259 92 20 chr4 34427877 34427934 -167900413 + MLT1E LTR MaLR 542 593 0 373 257 128 14 chr4 34428140 34428288 -167900059 + MLT1J LTR MaLR 103 267 -244 336 253 282 0 chr4 34428356 34428558 -167899789 + LTR16A LTR ERVL 192 450 0 1550 132 176 139 chr4 34428901 34429311 -167899036 - MSTC LTR MaLR -3 425 1 3092 154 8 4 chr4 34430284 34430785 -167897562 - MER1A DNA MER1_type 0 529 27 596 212 9 0 chr4 34430776 34430889 -167897458 - MER3 DNA MER1_type -95 114 1 * 206 254 0 18 chr4 34430891 34430946 -167897401 + L2 LINE L2 3191 3244 -69 238 111 0 0 chr4 34430946 34430982 -167897365 - Charlie3 DNA MER1_type -2432 278 243 571 277 75 75 chr4 34431087 34431434 -167896913 + LTR16C LTR ERVL 127 473 -18 228 323 76 31 chr4 34431506 34431729 -167896618 + L1MC4a LINE L1 5797 6029 -1779 251 333 0 0 chr4 34431810 34431903 -167896444 - MER5A DNA MER1_type -50 139 47 434 263 120 0 chr4 34434514 34434647 -167893700 + MIR SINE MIR 25 173 -89 251 207 17 17 chr4 34435089 34435147 -167893200 - MLT1K LTR MaLR -8 580 523 225 62 62 0 chr4 34435149 34435197 -167893150 + (TA)n Simple_repeat Simple_repeat 1 51 0 2151 100 0 3 chr4 34435197 34435487 -167892860 - AluSq SINE Alu -24 289 1 451 220 133 64 chr4 34435505 34435678 -167892669 - MLT1K LTR MaLR -77 511 327 467 229 10 51 chr4 34435679 34435879 -167892468 + MLT1G1 LTR MaLR 1 271 -324 375 196 104 26 chr4 34435860 34435972 -167892375 + MLT1G1 LTR MaLR 455 539 -10 * 1026 157 0 30 chr4 34436380 34436554 -167891793 + AluJb SINE Alu 121 290 -22 1974 157 0 3 chr4 34436554 34436867 -167891480 + AluSx SINE Alu 1 312 0 1026 157 0 30 chr4 34436867 34436889 -167891458 + AluJb SINE Alu 290 311 -1 191 347 28 0 chr4 34436997 34437069 -167891278 - MIR SINE MIR -6 256 183 883 241 186 28 chr4 34437120 34437443 -167890904 - MLT1J LTR MaLR 0 511 138 2109 200 39 90 chr4 34437448 34437952 -167890395 - MER41D LTR ERV1 -22 535 60 2060 102 0 31 chr4 34437952 34438281 -167890066 - AluSq SINE Alu 0 320 1 2109 200 39 90 chr4 34438281 34438339 -167890008 - MER41D LTR ERV1 -497 60 1 470 267 30 15 chr4 34438339 34438474 -167889873 - MLT1J LTR MaLR -371 140 4 2333 77 0 0 chr4 34438554 34438851 -167889496 + AluY SINE Alu 1 297 -14 314 241 167 74 chr4 34438852 34438979 -167889368 + MIR SINE MIR 22 136 -126 1583 182 34 0 chr4 34438979 34439276 -167889071 - AluJo SINE Alu -5 307 1 391 244 104 30 chr4 34439277 34439441 -167888906 + MER104 DNA MER2_type 2 177 -3 314 241 167 74 chr4 34439441 34439473 -167888874 + MIR SINE MIR 135 198 -64 25 0 0 0 chr4 34439487 34439512 -167888835 + AT_rich Low_complexity Low_complexity 1 25 0 181 324 0 0 chr4 34439528 34439596 -167888751 + MIR SINE MIR 195 262 0 833 79 6 34 chr4 34439823 34440000 -167888347 + (TTAGGG)n Simple_repeat Simple_repeat 5 176 0 503 149 0 39 chr4 34440032 34440213 -167888134 + (TTAGGG)n Simple_repeat Simple_repeat 5 178 0 482 169 0 28 chr4 34440269 34440411 -167887936 + (TTAGGG)n Simple_repeat Simple_repeat 4 141 0 1137 248 90 21 chr4 34440429 34440864 -167887483 - MLT1C LTR MaLR -2 465 1 1692 178 7 10 chr4 34441623 34441916 -167886431 - AluJo SINE Alu -20 292 1 1610 256 84 27 chr4 34441916 34442475 -167885872 - MER20B DNA MER1_type -26 757 167 245 196 39 0 chr4 34442477 34442528 -167885819 - MER20B DNA MER1_type -730 53 1 667 248 15 25 chr4 34442826 34443024 -167885323 + MIR SINE MIR 17 212 -50 2109 109 7 0 chr4 34443026 34443319 -167885028 - AluSq SINE Alu -18 295 1 550 226 53 0 chr4 34443463 34443596 -167884751 - L1MB5 LINE L1 -58 6116 5977 235 299 154 8 chr4 34443764 34443881 -167884466 + MIR SINE MIR 20 153 -109 912 232 14 28 chr4 34444046 34444257 -167884090 - MER63A DNA MER1_type 0 210 3 642 314 142 12 chr4 34444491 34444829 -167883518 + MLT1L LTR MaLR 227 608 -7 1725 261 52 56 chr4 34445005 34445128 -167883219 + L1M4 LINE L1 3391 3513 -2633 2134 100 0 3 chr4 34445128 34445417 -167882930 + AluSx SINE Alu 1 288 -24 1725 261 52 56 chr4 34445417 34445948 -167882399 + L1M4 LINE L1 3513 4042 -2104 2261 65 7 3 chr4 34445948 34446239 -167882108 - AluY SINE Alu -19 292 1 1725 261 52 56 chr4 34446239 34446489 -167881858 + L1M4 LINE L1 4042 4292 -1854 821 179 8 0 chr4 34446716 34446850 -167881497 + FRAM SINE Alu 30 164 -12 632 258 149 21 chr4 34446850 34447256 -167881091 - MLT1G1 LTR MaLR -85 510 3 337 289 0 21 chr4 34447300 34447397 -167880950 + MLT1K LTR MaLR 139 233 -355 250 291 54 81 chr4 34447502 34447551 -167880796 + MLT1J LTR MaLR 367 416 -95 1891 99 4 0 chr4 34447551 34447804 -167880543 - AluSp SINE Alu -19 294 41 250 291 54 81 chr4 34447804 34447902 -167880445 + MLT1J LTR MaLR 416 510 -1 217 253 193 0 chr4 34448010 34448093 -167880254 + L2 LINE L2 3174 3272 0 398 270 68 21 chr4 34448128 34448289 -167880058 + MIR SINE MIR 31 196 -64 617 253 59 81 chr4 34448444 34448764 -167879583 - MLT1H LTR MaLR -93 456 144 2195 223 51 119 chr4 34448804 34449074 -167879273 - MER21B LTR ERV1 -61 802 515 2034 141 0 0 chr4 34449074 34449372 -167878975 + AluSx SINE Alu 3 300 -12 2195 223 51 119 chr4 34449372 34449831 -167878516 - MER21B LTR ERV1 -348 515 137 2143 168 44 29 chr4 34449831 34450243 -167878104 + MSTB LTR MaLR 5 422 -4 2195 223 51 119 chr4 34450243 34450372 -167877975 - MER21B LTR ERV1 -726 137 1 1780 179 155 69 chr4 34450509 34450974 -167877373 - MLT1D LTR MaLR 0 505 1 469 278 8 8 chr4 34451080 34451213 -167877134 + MIR SINE MIR 15 147 -115 901 217 110 104 chr4 34451225 34451437 -167876910 - MLT1A2 LTR MaLR -17 357 148 3862 127 78 5 chr4 34451437 34452028 -167876319 - MER51A LTR ERV1 0 634 1 2064 142 44 25 chr4 34452036 34452403 -167875944 + THE1C LTR MaLR 2 375 0 901 217 110 104 chr4 34452403 34452536 -167875811 - MLT1A2 LTR MaLR -232 142 1 267 257 119 10 chr4 34452541 34452642 -167875705 + MIR SINE MIR 150 261 -1 233 233 67 11 chr4 34452647 34452737 -167875610 - Charlie7 DNA MER1_type -78 2534 2440 260 303 37 28 chr4 34452826 34452935 -167875412 + MER5A DNA MER1_type 16 125 -64 891 175 12 12 chr4 34452939 34452959 -167875388 + AluJo SINE Alu 116 135 -177 1810 142 3 36 chr4 34452959 34453268 -167875079 + AluSx SINE Alu 1 299 -13 891 175 12 12 chr4 34453268 34453418 -167874929 + AluJo SINE Alu 134 286 -26 226 273 15 15 chr4 34454474 34454540 -167873807 - MIR SINE MIR -65 143 78 721 210 0 0 chr4 34454672 34454791 -167873556 - FLAM_A SINE Alu -10 123 5 2025 144 0 3 chr4 34455068 34455380 -167872967 - AluSx SINE Alu -1 311 1 268 187 29 0 chr4 34456937 34456999 -167871348 - MIR SINE MIR -62 146 77 216 0 0 0 chr4 34457098 34457122 -167871225 + (A)n Simple_repeat Simple_repeat 1 24 0 264 227 0 0 chr4 34457126 34457170 -167871177 - AluJ/monomer SINE Alu -258 44 1 341 172 0 0 chr4 34457201 34457259 -167871088 + THE1A LTR MaLR 222 279 -76 183 339 0 16 chr4 34457272 34457334 -167871013 + L2 LINE L2 3009 3069 -203 2271 100 0 0 chr4 34457539 34457840 -167870507 - AluSq SINE Alu -12 301 1 394 269 0 72 chr4 34457884 34458041 -167870306 - Charlie7 DNA MER1_type 0 2612 2472 2183 97 7 0 chr4 34458041 34458330 -167870017 - AluSx SINE Alu -21 291 1 394 269 0 72 chr4 34458330 34458380 -167869967 - Charlie7 DNA MER1_type -140 2472 2420 * 876 278 92 17 chr4 34458379 34458728 -167869619 - Charlie7 DNA MER1_type -1891 721 347 1890 141 0 13 chr4 34458806 34459105 -167869242 + AluJo SINE Alu 4 298 -14 317 275 22 0 chr4 34459235 34459355 -167868992 + LTR50 LTR ERVL 402 795 0 272 289 178 0 chr4 34459355 34459489 -167868858 - Charlie7 DNA MER1_type -2446 166 9 684 153 17 8 chr4 34459556 34459674 -167868673 + MLT1D LTR MaLR 1 119 -386 807 209 0 0 chr4 34459674 34459813 -167868534 + FLAM_C SINE Alu 2 140 -3 2066 126 0 3 chr4 34459814 34460115 -167868232 + AluSx SINE Alu 1 300 -12 2151 79 7 4 chr4 34460116 34460436 -167867911 + AluY SINE Alu 2 322 0 286 140 20 0 chr4 34460436 34460486 -167867861 + THE1A LTR MaLR 314 364 0 10114 95 37 83 chr4 34460486 34461082 -167867265 + THE1C-int LTR MaLR 1 623 -957 2184 121 0 0 chr4 34461082 34461388 -167866959 - AluSx SINE Alu -6 306 1 10114 95 37 83 chr4 34461388 34461752 -167866595 + THE1C-int LTR MaLR 623 1002 -578 2311 93 0 0 chr4 34461752 34462054 -167866293 + AluSx SINE Alu 1 302 -10 10114 95 37 83 chr4 34462054 34462748 -167865599 + THE1C-int LTR MaLR 1002 1580 0 991 91 7 14 chr4 34462748 34462891 -167865456 + THE1C LTR MaLR 1 142 -233 1499 135 4 4 chr4 34462892 34463129 -167865218 + AluJo SINE Alu 76 312 0 1617 168 31 34 chr4 34463140 34463320 -167865027 + MLT1D LTR MaLR 180 360 -145 2285 89 0 0 chr4 34463320 34463623 -167864724 + AluY SINE Alu 1 303 -8 1617 168 31 34 chr4 34463623 34463764 -167864583 + MLT1D LTR MaLR 360 500 -5 2100 114 0 3 chr4 34464009 34464307 -167864040 + AluSx SINE Alu 1 297 -15 220 253 46 11 chr4 34464467 34464554 -167863793 - MIR SINE MIR -120 142 53 383 250 20 10 chr4 34465228 34465328 -167863019 + MIR SINE MIR 32 132 -130 912 269 202 25 chr4 34465328 34465804 -167862543 + MLT1L LTR MaLR 51 610 -5 209 224 172 0 chr4 34465808 34465866 -167862481 + MIR SINE MIR 168 235 -27 1956 136 3 10 chr4 34466559 34466867 -167861480 - AluSx SINE Alu -6 306 1 340 226 119 0 chr4 34466869 34466953 -167861394 - FRAM SINE Alu -15 151 58 345 221 144 0 chr4 34567166 34567270 -167761077 + LTR40a LTR ERVL 5 123 -396 1340 297 24 12 chr4 34567371 34567789 -167760558 + LTR40a LTR ERVL 97 519 0 244 245 105 91 chr4 34567958 34568101 -167760246 + L2 LINE L2 3167 3311 -2 586 311 118 4 chr4 34568393 34568647 -167759700 + MLT1J LTR MaLR 1 283 -228 8362 164 11 20 chr4 34568685 34569435 -167758912 - Tigger2 DNA MER2_type -1 2717 1961 189 0 0 0 chr4 34569435 34569456 -167758891 + (TTAAA)n Simple_repeat Simple_repeat 4 24 0 8362 164 11 20 chr4 34569456 34570244 -167758103 - Tigger2 DNA MER2_type -757 1961 1203 12705 118 43 9 chr4 34570992 34572658 -167755689 + Charlie3 DNA MER1_type 1 1741 -965 2067 110 7 7 chr4 34572658 34572950 -167755397 - AluSx SINE Alu 0 312 21 12705 118 43 9 chr4 34572950 34573167 -167755180 + Charlie3 DNA MER1_type 1741 1949 -757 3192 149 78 48 chr4 34573271 34573922 -167754425 - Tigger2 DNA MER2_type -2047 671 1 280 284 134 8 chr4 34573933 34574067 -167754280 + MIR SINE MIR 112 262 0 273 278 69 83 chr4 34574087 34574231 -167754116 + MLT1J LTR MaLR 324 465 -46 183 42 0 0 chr4 34575002 34575026 -167753321 + (TTTG)n Simple_repeat Simple_repeat 4 27 0 22 35 0 0 chr4 34575060 34575089 -167753258 + AT_rich Low_complexity Low_complexity 1 29 0 297 20 60 0 chr4 34575115 34575165 -167753182 + (TA)n Simple_repeat Simple_repeat 1 53 0 342 333 65 0 chr4 34576608 34576746 -167751601 + MIR SINE MIR 63 209 -53 265 303 10 20 chr4 34576757 34576856 -167751491 - MIR SINE MIR -79 183 86 807 313 54 38 chr4 34577365 34577845 -167750502 - L2 LINE L2 0 3313 2826 1551 203 24 37 chr4 34577864 34578239 -167750108 - MLT1A2 LTR MaLR -4 370 1 27 0 0 0 chr4 34578895 34578922 -167749425 + AT_rich Low_complexity Low_complexity 1 27 0 197 353 93 22 chr4 34578989 34579128 -167749219 + L2 LINE L2 2894 3042 -230 297 305 160 11 chr4 34579144 34579331 -167749016 - MIR SINE MIR -24 238 24 233 29 29 0 chr4 34579340 34579374 -167748973 + (TA)n Simple_repeat Simple_repeat 2 36 0 254 384 160 4 chr4 34579530 34579767 -167748580 - L3 LINE CR1 -130 1447 1174 206 236 0 28 chr4 34580020 34580092 -167748255 + CT-rich Low_complexity Low_complexity 3 72 0 24 32 0 0 chr4 34580216 34580247 -167748100 + AT_rich Low_complexity Low_complexity 1 31 0 1896 194 20 3 chr4 34580419 34580770 -167747577 - MER47A DNA MER2_type -7 359 3 226 421 22 0 chr4 34580802 34580980 -167747367 - L1MEc LINE L1 -6029 367 186 40 21 0 0 chr4 34581072 34581119 -167747228 + AT_rich Low_complexity Low_complexity 1 47 0 2656 175 4 7 chr4 34581413 34581914 -167746433 - MER44D DNA MER2_type 0 605 1 229 25 0 50 chr4 34581945 34581985 -167746362 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 1934 135 3 0 chr4 34582203 34582520 -167745827 - AluSq SINE Alu 0 320 3 180 304 81 68 chr4 34582772 34582920 -167745427 - L2 LINE L2 -994 2320 2171 22 0 0 0 chr4 34583177 34583199 -167745148 + AT_rich Low_complexity Low_complexity 1 22 0 254 331 13 40 chr4 34584211 34584362 -167743985 - L2 LINE L2 -5 3308 3162 43 64 0 0 chr4 34584454 34584532 -167743815 + AT_rich Low_complexity Low_complexity 1 78 0 277 354 73 16 chr4 34584988 34585180 -167743167 - L2 LINE L2 -526 2788 2586 2069 151 31 11 chr4 34585191 34585548 -167742799 - THE1B LTR MaLR 0 364 1 326 106 0 0 chr4 34585819 34585866 -167742481 - L1MA7 LINE L1 -356 5935 5889 1236 204 36 0 chr4 34585868 34586147 -167742200 + L1MA7 LINE L1 5997 6285 -6 271 333 173 41 chr4 34586786 34587203 -167741144 + L2 LINE L2 2842 3313 0 2030 97 35 0 chr4 34587918 34588207 -167740140 + Charlie3 DNA MER1_type 2408 2706 -4 186 43 0 0 chr4 34588590 34588613 -167739734 + (TG)n Simple_repeat Simple_repeat 2 24 0 2442 172 11 15 chr4 34589044 34589504 -167738843 - LTR22A LTR ERVK 0 458 1 5373 96 6 3 chr4 34590060 34591397 -167736950 - L1PA6 LINE L1 0 6154 4753 592 111 0 0 chr4 34591397 34591487 -167736860 - L1PA6 LINE L1 -3247 2899 2810 5828 98 43 5 chr4 34591487 34592665 -167735682 + L1PA10 LINE L1 4949 6168 0 1373 157 63 57 chr4 34592665 34592965 -167735382 - MER44D DNA MER2_type -36 573 2 21 36 0 0 chr4 34594320 34594348 -167733999 + AT_rich Low_complexity Low_complexity 1 28 0 199 277 0 0 chr4 34594918 34594965 -167733382 - MIR SINE MIR -179 83 37 241 121 60 0 chr4 34596269 34596352 -167731995 + (TA)n Simple_repeat Simple_repeat 1 88 0 21 0 0 0 chr4 34596353 34596374 -167731973 + AT_rich Low_complexity Low_complexity 1 21 0 648 197 27 69 chr4 34599469 34599657 -167728690 - MIR SINE MIR -13 249 70 387 250 105 26 chr4 34599898 34600050 -167728297 + LTR16C LTR ERVL 163 326 -165 7982 188 60 19 chr4 34600614 34601377 -167726970 - L1M4c LINE L1 -4575 1809 1079 207 0 0 0 chr4 34601377 34601400 -167726947 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 7982 188 60 19 chr4 34601400 34602356 -167725991 - L1M4c LINE L1 -5305 1079 19 1971 133 136 16 chr4 34605073 34605455 -167722892 + MSTA LTR MaLR 1 428 0 339 290 0 20 chr4 34605530 34605630 -167722717 + MER58A DNA MER1_type 1 98 -9 512 256 135 19 chr4 34605631 34605787 -167722560 + MER96 DNA MER1_type? 1 174 -1 * 578 250 7 0 chr4 34605787 34605918 -167722429 + MER58A DNA MER1_type 90 221 -3 723 291 0 68 chr4 34606145 34606396 -167721951 + MIR SINE MIR 27 260 -2 420 339 70 22 chr4 34607651 34607878 -167720469 - MIR SINE MIR -18 244 7 224 59 29 0 chr4 34608383 34608417 -167719930 + (TTA)n Simple_repeat Simple_repeat 2 36 0 33 25 0 0 chr4 34610653 34610693 -167717654 + AT_rich Low_complexity Low_complexity 1 40 0 1291 231 332 0 chr4 34610942 34611367 -167716980 + MER52A LTR ERV1 1 566 -1189 965 163 54 11 chr4 34611369 34611678 -167716669 - THE1C LTR MaLR -2 373 1 2716 184 47 25 chr4 34611678 34612233 -167716114 + MER52A LTR ERV1 562 1128 -627 700 54 0 0 chr4 34612236 34612348 -167715999 + AluSg/x SINE Alu 217 328 0 2057 120 0 7 chr4 34612675 34612976 -167715371 + AluSg SINE Alu 1 299 -11 2594 29 0 0 chr4 34613046 34613376 -167714971 + L1PA4 LINE L1 5833 6162 0 186 43 0 0 chr4 34613424 34613447 -167714900 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 512 202 95 43 chr4 34614119 34614302 -167714045 + MLT1A2 LTR MaLR 1 188 -186 248 155 0 17 chr4 34614302 34614360 -167713987 + CT-rich Low_complexity Low_complexity 2 58 0 840 226 6 5 chr4 34614367 34614559 -167713788 + MLT1A2 LTR MaLR 188 380 -10 191 232 61 121 chr4 34614678 34614777 -167713570 + MIR SINE MIR 23 115 -147 598 233 0 15 chr4 34615575 34615708 -167712639 + FLAM_A SINE Alu 3 133 0 236 279 0 0 chr4 34616194 34616262 -167712085 + (TA)n Simple_repeat Simple_repeat 2 69 0 22 70 0 0 chr4 34616608 34616651 -167711696 + AT_rich Low_complexity Low_complexity 1 43 0 2538 40 0 0 chr4 34617266 34617563 -167710784 + AluY SINE Alu 1 297 -14 1487 50 0 0 chr4 34617563 34617742 -167710605 + AluY SINE Alu 133 311 0 1155 215 81 29 chr4 34617754 34618217 -167710130 + L1MB8 LINE L1 5169 5849 -335 2404 47 10 3 chr4 34618217 34618514 -167709833 - AluY SINE Alu -12 299 1 1155 215 81 29 chr4 34618514 34618636 -167709711 + L1MB8 LINE L1 5849 5963 -221 894 183 9 144 chr4 34618644 34618977 -167709370 + AluJo SINE Alu 1 288 -24 509 192 93 52 chr4 34618991 34619163 -167709184 + L1MB8 LINE L1 5958 6136 -42 184 277 0 0 chr4 34619485 34619532 -167708815 - MIR SINE MIR -70 192 146 318 344 56 6 chr4 34619546 34619706 -167708641 + MIR SINE MIR 73 240 -22 247 302 11 0 chr4 34619755 34619831 -167708516 - MIR SINE MIR -67 141 71 23 33 0 0 chr4 34620257 34620287 -167708060 + AT_rich Low_complexity Low_complexity 1 30 0 2058 116 0 3 chr4 34620932 34621217 -167707130 + AluSc SINE Alu 9 292 -17 541 128 47 0 chr4 34621835 34621921 -167706426 - AluSg/x SINE Alu -97 215 126 193 343 75 0 chr4 34622148 34622215 -167706132 - L2 LINE L2 -7 3265 3194 35 63 0 0 chr4 34622624 34622687 -167705660 + AT_rich Low_complexity Low_complexity 1 63 0 2111 226 80 24 chr4 34622699 34623405 -167704942 - L1MB8 LINE L1 -6 6983 6318 261 0 0 0 chr4 34623405 34623434 -167704913 + (TA)n Simple_repeat Simple_repeat 2 30 0 2111 226 80 24 chr4 34623434 34623448 -167704899 - L1MB8 LINE L1 -671 6318 6306 2254 89 20 0 chr4 34623448 34623750 -167704597 - AluSx SINE Alu -2 310 3 2111 226 80 24 chr4 34623750 34624163 -167704184 - L1MB8 LINE L1 -683 6306 5918 207 0 0 0 chr4 34624163 34624186 -167704161 + (CA)n Simple_repeat Simple_repeat 2 24 0 2111 226 80 24 chr4 34624186 34624380 -167703967 - L1MB8 LINE L1 -1071 5918 5403 1324 232 70 74 chr4 34624378 34625271 -167703076 - L1MB8 LINE L1 -5057 1798 916 * 1353 219 89 16 chr4 34625433 34625802 -167702545 + MSTD LTR MaLR 1 396 0 486 245 43 20 chr4 34626240 34626397 -167701950 - L1MB8 LINE L1 -6318 537 71 299 363 102 13 chr4 34626458 34626684 -167701663 - L2 LINE L2 -576 2738 2493 5701 171 24 36 chr4 34627197 34627785 -167700562 + Tigger1 DNA MER2_type 2 571 -1847 1552 210 7 7 chr4 34627785 34628076 -167700271 - AluJo SINE Alu -21 291 1 5701 171 24 36 chr4 34628076 34628586 -167699761 + Tigger1 DNA MER2_type 571 1086 -1332 2154 160 5 19 chr4 34628586 34628955 -167699392 - THE1B LTR MaLR 0 364 1 5313 168 14 16 chr4 34628955 34629890 -167698457 + Tigger1 DNA MER2_type 1085 2017 -401 243 308 31 0 chr4 34629955 34630020 -167698327 + LTR50 LTR ERVL 101 167 -628 30 0 0 0 chr4 34630384 34630414 -167697933 + AT_rich Low_complexity Low_complexity 1 30 0 6096 102 8 0 chr4 34630423 34631422 -167696925 - L1PA13 LINE L1 -9 6154 5157 861 168 0 0 chr4 34631424 34631561 -167696786 + Tigger1 DNA MER2_type 2020 2156 -262 1334 186 165 21 chr4 34631704 34632043 -167696304 + MLT1B LTR MaLR 1 388 -2 1951 106 47 33 chr4 34633896 34634197 -167694150 + AluSq SINE Alu 1 305 -8 30 59 0 0 chr4 34635277 34635328 -167693019 + AT_rich Low_complexity Low_complexity 1 51 0 26 82 0 0 chr4 34635420 34635481 -167692866 + AT_rich Low_complexity Low_complexity 1 61 0 6694 180 96 35 chr4 34637051 34638635 -167689712 - MER52A LTR ERV1 0 1755 1 2253 57 0 11 chr4 34638688 34638970 -167689377 + AluY SINE Alu 6 284 -27 30 0 0 0 chr4 34638970 34639000 -167689347 + AT_rich Low_complexity Low_complexity 1 30 0 645 252 25 0 chr4 34639357 34639516 -167688831 + MIR SINE MIR 100 262 0 546 57 0 0 chr4 34639703 34639773 -167688574 + (TA)n Simple_repeat Simple_repeat 2 71 0 28 0 0 0 chr4 34640111 34640139 -167688208 + AT_rich Low_complexity Low_complexity 1 28 0 1549 161 0 0 chr4 34640220 34640456 -167687891 - AluSx SINE Alu -76 236 1 297 348 92 7 chr4 34640591 34640732 -167687615 - MLT1H LTR MaLR 0 595 443 595 259 38 24 chr4 34640793 34641005 -167687342 - MLT1H LTR MaLR -256 293 79 483 379 51 35 chr4 34641706 34642270 -167686077 + ERVL LTR ERVL 1369 1941 -3823 401 294 75 27 chr4 34642382 34642569 -167685778 + LTR33 LTR ERVL 322 517 -4 2036 125 0 13 chr4 34642679 34642982 -167685365 - AluSg SINE Alu -11 299 1 23 0 0 0 chr4 34642992 34643015 -167685332 + AT_rich Low_complexity Low_complexity 1 23 0 9080 175 40 18 chr4 34643890 34645637 -167682710 - Tigger2 DNA MER2_type -934 1784 1 494 272 90 73 chr4 34645856 34645962 -167682385 - MER34 LTR ERV1 0 565 462 2055 115 0 0 chr4 34645962 34646241 -167682106 + AluSc SINE Alu 12 290 -19 494 272 90 73 chr4 34646241 34646696 -167681651 - MER34 LTR ERV1 -103 462 10 23 0 0 0 chr4 34646749 34646772 -167681575 + AT_rich Low_complexity Low_complexity 1 23 0 1780 158 0 0 chr4 34646802 34647067 -167681280 - AluSx SINE Alu -39 273 9 184 362 0 0 chr4 34647337 34647395 -167680952 + MIR3 SINE MIR 114 171 -37 566 328 38 11 chr4 34647874 34648139 -167680208 - LTR16A LTR ERVL -9 441 170 581 321 53 10 chr4 34648687 34648896 -167679451 - MIR SINE MIR -14 248 31 496 288 11 28 chr4 34649284 34649461 -167678886 + Charlie2 DNA MER1_type 35 208 -2574 564 266 51 0 chr4 34649545 34649722 -167678625 + Charlie2 DNA MER1_type 1859 2044 -818 394 234 30 7 chr4 34649853 34650007 -167678340 + MIR SINE MIR 35 164 -98 24 0 0 0 chr4 34650017 34650041 -167678306 + AT_rich Low_complexity Low_complexity 1 24 0 258 136 0 0 chr4 34651055 34651099 -167677248 + (CA)n Simple_repeat Simple_repeat 2 45 0 25 0 0 0 chr4 34651365 34651390 -167676957 + AT_rich Low_complexity Low_complexity 1 25 0 187 379 29 36 chr4 34651883 34652023 -167676324 - MER5A DNA MER1_type -30 159 21 180 208 104 0 chr4 34652110 34652158 -167676189 + L2 LINE L2 3261 3313 0 23 33 0 0 chr4 34652162 34652192 -167676155 + AT_rich Low_complexity Low_complexity 1 30 0 195 42 0 0 chr4 34652947 34652971 -167675376 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 28 48 0 0 chr4 34654553 34654595 -167673752 + AT_rich Low_complexity Low_complexity 1 42 0 296 291 149 21 chr4 34654695 34654836 -167673511 - MER5B DNA MER1_type -16 162 4 24 0 0 0 chr4 34654902 34654926 -167673421 + AT_rich Low_complexity Low_complexity 1 24 0 180 354 0 24 chr4 34656415 34656497 -167671850 - L2 LINE L2 -583 2731 2652 222 333 30 20 chr4 34656782 34656881 -167671466 + MER5A DNA MER1_type 4 103 -86 344 351 147 32 chr4 34656931 34657467 -167670880 - L2 LINE L2 -962 2352 1755 754 269 155 25 chr4 34657483 34657890 -167670457 + MLT1F1 LTR MaLR 1 490 -77 278 111 0 0 chr4 34657897 34657933 -167670414 + U2 snRNA snRNA 1 36 -152 258 32 0 0 chr4 34657949 34657980 -167670367 + (TG)n Simple_repeat Simple_repeat 2 32 0 1468 214 27 27 chr4 34658519 34658867 -167669480 + MLT2D LTR ERVL 69 414 0 400 298 127 0 chr4 34659239 34659444 -167668903 + MLT1F1 LTR MaLR 301 531 -36 443 381 60 18 chr4 34659679 34660115 -167668232 - L2 LINE L2 -1432 1882 1429 1826 199 64 15 chr4 34660219 34660627 -167667720 - MSTA LTR MaLR 0 428 1 1582 113 0 0 chr4 34660906 34661118 -167667229 + AluSq SINE Alu 87 298 -15 30 59 0 0 chr4 34661606 34661657 -167666690 + AT_rich Low_complexity Low_complexity 1 51 0 308 350 108 10 chr4 34662188 34662382 -167665965 - L1ME2 LINE L1 -227 5937 5725 262 333 76 0 chr4 34662462 34662594 -167665753 - L1ME2 LINE L1 -481 5689 5548 3040 83 2 0 chr4 34662833 34663267 -167665080 + L1PA8 LINE L1 5745 6179 0 29 28 0 0 chr4 34663326 34663362 -167664985 + AT_rich Low_complexity Low_complexity 1 36 0 30 59 0 0 chr4 34665261 34665312 -167663035 + AT_rich Low_complexity Low_complexity 1 51 0 348 64 0 0 chr4 34666220 34666267 -167662080 + (TG)n Simple_repeat Simple_repeat 2 48 0 23 54 0 0 chr4 34666549 34666586 -167661761 + AT_rich Low_complexity Low_complexity 1 37 0 270 0 0 0 chr4 34666666 34666696 -167661651 + (CA)n Simple_repeat Simple_repeat 2 31 0 835 252 99 38 chr4 34666737 34667130 -167661217 + MER110A LTR ERV1 43 459 -9 3297 105 39 4 chr4 34667392 34667886 -167660461 + MER9 LTR ERVK 1 511 0 200 200 0 0 chr4 34668007 34668042 -167660305 + A-rich Low_complexity Low_complexity 2 36 0 226 265 73 0 chr4 34668453 34668521 -167659826 + MIR SINE MIR 179 251 -11 190 338 70 0 chr4 34668820 34668891 -167659456 + MIR SINE MIR 48 123 -139 232 311 76 0 chr4 34668905 34669024 -167659323 + MIR SINE MIR 91 218 -44 327 98 39 0 chr4 34669150 34669201 -167659146 - MADE1 DNA Mariner -27 53 1 39 0 0 0 chr4 34669209 34669248 -167659099 + AT_rich Low_complexity Low_complexity 1 39 0 391 298 23 0 chr4 34669908 34670039 -167658308 - MLT1E2 LTR MaLR 0 626 493 290 120 20 0 chr4 34670016 34670066 -167658281 - MLT1D LTR MaLR -398 107 57 * 225 0 0 0 chr4 34670252 34670277 -167658070 + (CA)n Simple_repeat Simple_repeat 2 26 0 21 57 0 0 chr4 34670305 34670340 -167658007 + AT_rich Low_complexity Low_complexity 1 35 0 1560 106 0 26 chr4 34671747 34671974 -167656373 - AluSq SINE Alu -8 305 85 1189 107 6 0 chr4 34671974 34672133 -167656214 - AluSp SINE Alu -148 165 6 23 33 0 0 chr4 34672868 34672898 -167655449 + AT_rich Low_complexity Low_complexity 1 30 0 242 231 62 0 chr4 34673125 34673190 -167655157 - MLT1J2 LTR MaLR -315 135 67 1834 257 49 40 chr4 34673634 34674202 -167654145 + MLT1E2 LTR MaLR 53 625 -1 859 363 127 15 chr4 34674241 34674882 -167653465 + L2 LINE L2 2593 3308 -5 26 0 0 0 chr4 34677408 34677434 -167650913 + AT_rich Low_complexity Low_complexity 1 26 0 318 318 52 79 chr4 34678113 34678443 -167649904 - L1ME LINE L1 -5194 876 556 22 0 0 0 chr4 34678981 34679003 -167649344 + AT_rich Low_complexity Low_complexity 1 22 0 1756 205 58 10 chr4 34679484 34679521 -167648826 - MLT2D LTR ERVL 0 414 380 258 32 0 0 chr4 34679521 34679552 -167648795 + (GA)n Simple_repeat Simple_repeat 2 32 0 1756 205 58 10 chr4 34679552 34679909 -167648438 - MLT2D LTR ERVL -34 380 1 559 195 82 63 chr4 34679938 34680112 -167648235 + MLT1E LTR MaLR 425 593 0 21 57 0 0 chr4 34680630 34680665 -167647682 + AT_rich Low_complexity Low_complexity 1 35 0 232 211 18 0 chr4 34680921 34680978 -167647369 + (TA)n Simple_repeat Simple_repeat 1 58 0 284 164 33 0 chr4 34680995 34681056 -167647291 + CT-rich Low_complexity Low_complexity 3 65 0 312 172 47 0 chr4 34681076 34681140 -167647207 - FLAM_A SINE Alu 0 133 67 207 211 18 0 chr4 34681143 34681200 -167647147 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 275 65 22 0 chr4 34681216 34681262 -167647085 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 650 285 62 0 chr4 34681870 34682063 -167646284 + MER20 DNA MER1_type 11 215 -4 21 36 0 0 chr4 34682126 34682154 -167646193 + AT_rich Low_complexity Low_complexity 1 28 0 191 279 98 0 chr4 34682926 34682987 -167645360 + L2 LINE L2 3168 3234 -38 1215 187 6 103 chr4 34683087 34683418 -167644929 - AluJo SINE Alu -3 299 1 248 155 0 17 chr4 34683948 34684006 -167644341 + (TA)n Simple_repeat Simple_repeat 2 58 0 232 352 6 7 chr4 34685678 34685870 -167642477 - MIR SINE MIR -9 253 39 2016 103 0 7 chr4 34687263 34687545 -167640802 + AluSx SINE Alu 1 280 -32 258 32 0 0 chr4 34687547 34687578 -167640769 + (GAAA)n Simple_repeat Simple_repeat 3 33 0 385 302 85 38 chr4 34688454 34688689 -167639658 - MIR SINE MIR -2 260 15 1992 112 42 0 chr4 34688723 34689009 -167639338 + AluSq SINE Alu 1 298 -15 210 356 11 0 chr4 34689328 34689415 -167638932 + L2 LINE L2 3182 3269 -44 243 0 0 0 chr4 34689422 34689449 -167638898 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 22 0 0 0 chr4 34691493 34691515 -167636832 + AT_rich Low_complexity Low_complexity 1 22 0 199 293 9 57 chr4 34691737 34691843 -167636504 - MIR SINE MIR -2 260 160 979 126 7 0 chr4 34692382 34692533 -167635814 - AluSg/x SINE Alu -14 296 145 1228 266 84 53 chr4 34693004 34693530 -167634817 - MLT1H LTR MaLR 0 549 8 31 0 0 0 chr4 34693844 34693875 -167634472 + AT_rich Low_complexity Low_complexity 1 31 0 568 261 137 14 chr4 34694006 34694217 -167634130 + L1ME3A LINE L1 5842 6078 -92 1906 214 137 80 chr4 34694224 34695054 -167633293 - LTR28 LTR ERV1 0 1020 1 392 284 37 43 chr4 34695139 34695271 -167633076 + L1MEd LINE L1 947 1079 -5040 3575 111 0 4 chr4 34695271 34695784 -167632563 - MER9 LTR ERVK 0 511 1 392 284 37 43 chr4 34695784 34695813 -167632534 + L1MEd LINE L1 1079 1107 -5012 296 279 0 0 chr4 34695868 34695936 -167632411 + MLT1H LTR MaLR 109 176 -373 249 57 0 0 chr4 34696206 34696241 -167632106 + (T)n Simple_repeat Simple_repeat 1 35 0 2061 140 0 0 chr4 34696476 34696776 -167631571 + AluSx SINE Alu 1 300 -12 303 239 184 0 chr4 34696877 34696986 -167631361 + MLT1H LTR MaLR 421 549 0 533 336 126 40 chr4 34697443 34697751 -167630596 + L2 LINE L2 2795 3162 -151 1955 223 104 77 chr4 34697751 34698555 -167629792 - LTR1B LTR ERV1 0 826 1 533 336 126 40 chr4 34698555 34698722 -167629625 + L2 LINE L2 3162 3313 0 345 314 77 24 chr4 34698806 34698975 -167629372 - MLT1I LTR MaLR -119 290 113 251 250 56 0 chr4 34699157 34699229 -167629118 + MIR SINE MIR 159 234 -28 1491 181 26 13 chr4 34701603 34701912 -167626435 + L1MA7 LINE L1 5461 5773 -518 373 228 114 33 chr4 34701917 34702101 -167626246 + L1MA7 LINE L1 6107 6299 -1 3973 75 6 6 chr4 34702161 34702709 -167625638 + L1PA7 LINE L1 5607 6154 0 21 0 0 0 chr4 34704060 34704081 -167624266 + AT_rich Low_complexity Low_complexity 1 21 0 2167 120 3 0 chr4 34704936 34705236 -167623111 + AluSg SINE Alu 1 301 -9 2068 240 89 52 chr4 34705340 34705558 -167622789 + L1M4 LINE L1 4309 4518 -1628 3840 108 86 18 chr4 34705558 34706176 -167622171 - PABL_A LTR ERV1 0 660 1 2068 240 89 52 chr4 34706176 34706973 -167621374 + L1M4 LINE L1 4518 5361 -785 1941 136 4 0 chr4 34707098 34707398 -167620949 - AluSx SINE Alu 0 301 1 265 321 103 6 chr4 34709444 34709609 -167618738 - MIR SINE MIR -50 212 32 210 37 0 0 chr4 34710789 34710816 -167617531 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 767 170 71 7 chr4 34711148 34711183 -167617164 - MLT2B3 LTR ERVL 0 554 523 536 53 32 21 chr4 34711183 34711277 -167617070 + (TAGA)n Simple_repeat Simple_repeat 4 98 0 767 170 71 7 chr4 34711277 34711382 -167616965 - MLT2B3 LTR ERVL -31 523 405 2016 178 63 5 chr4 34712012 34712375 -167615972 - LOR1b LTR ERV1 0 461 72 1511 192 6 28 chr4 34712375 34712692 -167615655 - AluJo SINE Alu -2 310 1 2016 178 63 5 chr4 34712692 34712727 -167615620 - LOR1b LTR ERV1 -389 72 40 1924 138 3 3 chr4 34713976 34714292 -167614055 - AluSx SINE Alu 0 316 1 24 67 0 0 chr4 34714582 34714627 -167613720 + AT_rich Low_complexity Low_complexity 1 45 0 263 281 53 26 chr4 34714784 34714898 -167613449 - MIR SINE MIR -12 250 134 24 0 0 0 chr4 34714898 34714922 -167613425 + AT_rich Low_complexity Low_complexity 1 24 0 218 367 20 0 chr4 34716021 34716119 -167612228 - L2 LINE L2 -10 3262 3163 1895 169 0 0 chr4 34716605 34716907 -167611440 - AluSx SINE Alu -10 302 1 641 126 51 15 chr4 34717841 34718104 -167610243 + (TA)n Simple_repeat Simple_repeat 1 272 0 459 52 0 0 chr4 34718104 34718162 -167610185 + (CA)n Simple_repeat Simple_repeat 2 59 0 408 200 24 0 chr4 34718162 34718247 -167610100 + Tigger5 DNA MER2_type 6 92 -2231 450 156 39 0 chr4 34718284 34718361 -167609986 + Tigger5 DNA MER2_type 2244 2323 0 392 301 72 98 chr4 34718444 34718570 -167609777 + L1ME3 LINE L1 1083 1211 -5185 1979 139 0 17 chr4 34718570 34718871 -167609476 + AluSx SINE Alu 1 296 -16 392 301 72 98 chr4 34718871 34719343 -167609004 + L1ME3 LINE L1 1211 1665 -4731 1405 172 89 46 chr4 34719384 34719733 -167608614 - THE1B LTR MaLR 0 364 1 2034 150 3 0 chr4 34719766 34720072 -167608275 + AluSx SINE Alu 1 307 -5 346 299 72 46 chr4 34720440 34720791 -167607556 + L1ME3 LINE L1 4735 5094 -1121 966 193 64 0 chr4 34720794 34720981 -167607366 + MER2 DNA MER2_type 1 199 -146 602 259 104 16 chr4 34721221 34721592 -167606755 + L1ME3 LINE L1 5254 5665 -574 2175 141 19 19 chr4 34721630 34721992 -167606355 + THE1B LTR MaLR 1 362 -2 11297 100 14 1 chr4 34721994 34723554 -167604793 + THE1B-int LTR MaLR 1 1580 0 2168 147 11 31 chr4 34723554 34723914 -167604433 + THE1B LTR MaLR 1 353 -11 395 284 114 25 chr4 34723914 34724179 -167604168 + L1ME3 LINE L1 5872 6173 -58 1209 219 115 0 chr4 34724179 34724448 -167603899 + AluJb SINE Alu 1 300 -12 395 284 114 25 chr4 34724448 34724506 -167603841 + L1ME3 LINE L1 6173 6224 -7 504 333 95 30 chr4 34724772 34725171 -167603176 + L1ME2 LINE L1 4557 4981 -1165 48 102 0 0 chr4 34725356 34725523 -167602824 + AT_rich Low_complexity Low_complexity 1 167 0 189 0 0 0 chr4 34725624 34725645 -167602702 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 4154 202 75 13 chr4 34725900 34726926 -167601421 - L1MC2 LINE L1 -1 6761 5672 1682 208 32 2 chr4 34726939 34727347 -167601000 - L1MC2 LINE L1 -5179 1385 966 1216 269 138 41 chr4 34727355 34728104 -167600243 - L1MC2 LINE L1 -5147 903 184 1622 150 3 77 chr4 34728107 34728480 -167599867 - MER4A LTR ERV1 0 664 261 540 141 10 20 chr4 34728480 34728579 -167599768 - MER4A LTR ERV1 -566 98 1 565 210 21 21 chr4 34728579 34728722 -167599625 - L1MC2 LINE L1 -6267 297 155 2078 106 0 18 chr4 34729308 34729644 -167598703 + AluSc SINE Alu 5 335 0 2130 125 0 13 chr4 34730386 34730697 -167597650 + AluSx SINE Alu 6 312 0 1268 271 127 27 chr4 34730793 34731532 -167596815 + L1ME2 LINE L1 5296 6143 -21 561 268 27 16 chr4 34731642 34731825 -167596522 + L2 LINE L2 1521 1705 -1609 731 320 144 16 chr4 34731937 34732724 -167595623 + L2 LINE L2 2423 3311 -2 34 72 0 0 chr4 34732989 34733058 -167595289 + AT_rich Low_complexity Low_complexity 1 69 0 23 54 0 0 chr4 34733135 34733172 -167595175 + AT_rich Low_complexity Low_complexity 1 37 0 1546 208 53 17 chr4 34734361 34734722 -167593625 + MLT2D LTR ERVL 1 374 -40 1554 338 45 45 chr4 34735367 34736209 -167592138 - ERVL LTR ERVL -1323 4441 3597 2366 133 14 6 chr4 34736209 34736569 -167591778 + THE1B LTR MaLR 1 363 -1 1554 338 45 45 chr4 34736569 34736949 -167591398 - ERVL LTR ERVL -2166 3598 3219 29 28 0 0 chr4 34736958 34736994 -167591353 + AT_rich Low_complexity Low_complexity 1 36 0 835 342 69 14 chr4 34737038 34737626 -167590721 - ERVL LTR ERVL -1964 3032 2422 853 332 49 30 chr4 34738278 34738887 -167589460 - ERVL LTR ERVL -3393 1603 983 1251 231 43 12 chr4 34739304 34739720 -167588627 - Charlie1 DNA MER1_type -6 2755 2327 6482 190 138 26 chr4 34739809 34741320 -167587027 - MER52A LTR ERV1 0 1755 1 665 264 83 85 chr4 34741340 34741775 -167586572 - L2 LINE L2 -1266 2048 1615 2093 155 22 14 chr4 34744563 34744931 -167583416 + MER83C LTR ERV1 3 373 0 3419 268 63 57 chr4 34744988 34747035 -167581312 + MER83C-int LTR ERV1 47 1884 -3070 1505 317 51 41 chr4 34747743 34748833 -167579514 + MER83C-int LTR ERV1 2796 3896 -1058 280 345 0 0 chr4 34749235 34749345 -167579002 + MER83C-int LTR ERV1 6922 7031 -688 2075 246 14 20 chr4 34749546 34750206 -167578141 + MER83C-int LTR ERV1 4525 4862 -18 1849 186 21 37 chr4 34750220 34750597 -167577750 + MER83C LTR ERV1 3 373 0 27 29 0 0 chr4 34750765 34750799 -167577548 + AT_rich Low_complexity Low_complexity 1 34 0 1886 248 55 65 chr4 34750835 34751432 -167576915 - MER77 LTR ERV1 -9 596 6 862 139 0 28 chr4 34751925 34752069 -167576278 + MER50 LTR ERV1 2 141 -593 * 3372 166 12 8 chr4 34752056 34752642 -167575705 + HSMAR2 DNA Mariner 714 1301 -1 1248 227 47 65 chr4 34752741 34753253 -167575094 - MLT1D LTR MaLR -1 504 2 28 71 0 0 chr4 34754835 34754891 -167573456 + AT_rich Low_complexity Low_complexity 1 56 0 225 175 18 18 chr4 34757277 34757334 -167571013 - Charlie7 DNA MER1_type -2509 103 47 234 224 0 17 chr4 34757774 34757832 -167570515 - MIR SINE MIR -110 152 96 420 353 52 13 chr4 34757973 34758205 -167570142 + MIR SINE MIR 4 244 -18 27 49 0 0 chr4 34759945 34759986 -167568361 + AT_rich Low_complexity Low_complexity 1 41 0 253 206 32 0 chr4 34760153 34760216 -167568131 + (TA)n Simple_repeat Simple_repeat 1 65 0 449 103 0 51 chr4 34760315 34760393 -167567954 + MADE1 DNA Mariner 7 80 0 30 27 0 0 chr4 34760533 34760570 -167567777 + AT_rich Low_complexity Low_complexity 1 37 0 192 77 0 0 chr4 34761408 34761434 -167566913 + (TAA)n Simple_repeat Simple_repeat 2 27 0 3007 159 53 77 chr4 34761485 34762215 -167566132 + MER4D-int LTR ERV1 6046 6758 0 2278 157 13 14 chr4 34762215 34762967 -167565380 + MER4D LTR ERV1 1 751 -28 209 333 74 37 chr4 34763390 34763552 -167564795 + L2 LINE L2 2580 2747 -567 1199 250 72 32 chr4 34764276 34764372 -167563975 + MLT1D LTR MaLR 113 204 -301 2235 97 0 3 chr4 34764372 34764670 -167563677 + AluSx SINE Alu 1 297 -15 1199 250 72 32 chr4 34764670 34764949 -167563398 + MLT1D LTR MaLR 204 503 -2 21 36 0 0 chr4 34765067 34765095 -167563252 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr4 34765520 34765542 -167562805 + AT_rich Low_complexity Low_complexity 1 22 0 270 179 0 0 chr4 34767099 34767155 -167561192 + (TA)n Simple_repeat Simple_repeat 2 57 0 311 292 11 0 chr4 34767155 34767244 -167561103 + L1MC4 LINE L1 6614 6703 -1339 239 255 0 43 chr4 34767246 34767340 -167561007 - L1MC4 LINE L1 -1339 6703 6614 234 160 75 53 chr4 34767349 34767443 -167560904 + L1MCa LINE L1 2006 2101 -4325 949 204 0 15 chr4 34767682 34767878 -167560469 + L1MA9 LINE L1 1 193 -6837 2472 230 28 4 chr4 34767901 34768815 -167559532 + L1MA9 LINE L1 5655 6594 -678 1746 216 115 0 chr4 34768831 34769275 -167559072 + L1MA9 LINE L1 6778 7272 0 320 291 71 100 chr4 34769304 34769685 -167558662 + L1M4 LINE L1 4796 5165 -981 43 35 0 0 chr4 34769654 34769711 -167558636 + AT_rich Low_complexity Low_complexity 1 57 0 * 22 0 0 0 chr4 34770477 34770499 -167557848 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr4 34770660 34770683 -167557664 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr4 34771869 34771897 -167556450 + AT_rich Low_complexity Low_complexity 1 28 0 209 371 42 11 chr4 34773145 34773297 -167555050 + MIR SINE MIR 3 155 -69 3241 171 4 0 chr4 34773307 34773832 -167554515 - MER1A DNA MER1_type 0 527 1 1469 122 27 9 chr4 34773928 34774150 -167554197 + MER30 DNA MER1_type 5 230 0 25 51 0 0 chr4 34774160 34774199 -167554148 + AT_rich Low_complexity Low_complexity 1 39 0 210 300 0 0 chr4 34776359 34776429 -167551918 + GA-rich Low_complexity Low_complexity 3 72 0 345 309 39 85 chr4 34777405 34777664 -167550683 - MLT1I LTR MaLR -18 391 145 22 0 0 0 chr4 34779741 34779763 -167548584 + AT_rich Low_complexity Low_complexity 1 22 0 5102 184 26 18 chr4 34779842 34780527 -167547820 - L1MA9 LINE L1 -6 6306 5628 237 108 0 0 chr4 34780527 34780564 -167547783 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 2210 82 0 0 chr4 34780564 34780845 -167547502 - AluSc SINE Alu -28 281 1 5102 184 26 18 chr4 34780845 34781687 -167546660 - L1MA9 LINE L1 -683 5629 4766 25 0 0 0 chr4 34781778 34781803 -167546544 + AT_rich Low_complexity Low_complexity 1 25 0 435 201 18 0 chr4 34781826 34781990 -167546357 + (TA)n Simple_repeat Simple_repeat 2 168 0 236 154 0 0 chr4 34782002 34782041 -167546306 + MADE1 DNA Mariner 1 39 -41 1288 167 53 0 chr4 34782042 34782288 -167546059 + L1M2 LINE L1 5379 5637 -675 261 0 0 0 chr4 34782338 34782367 -167545980 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 42229 32 24 1 chr4 34782372 34788377 -167539970 - L1PA2 LINE L1 -13 6142 1 23 0 0 0 chr4 34789047 34789070 -167539277 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr4 34789439 34789467 -167538880 + AT_rich Low_complexity Low_complexity 1 28 0 1622 185 62 3 chr4 34789764 34790089 -167538258 - MER2 DNA MER2_type 0 344 1 188 278 74 0 chr4 34790968 34791022 -167537325 + MER5C DNA MER1_type 34 91 -233 23 0 0 0 chr4 34791777 34791800 -167536547 + AT_rich Low_complexity Low_complexity 1 23 0 297 0 0 0 chr4 34791842 34791875 -167536472 + (CA)n Simple_repeat Simple_repeat 2 34 0 483 281 66 28 chr4 34792250 34792546 -167535801 - L1MDa LINE L1 -3824 2716 2417 324 329 119 30 chr4 34793041 34793336 -167535011 - L1MDa LINE L1 -4821 1900 1580 22 70 0 0 chr4 34793424 34793467 -167534880 + AT_rich Low_complexity Low_complexity 1 43 0 29 60 0 0 chr4 34793518 34793568 -167534779 + AT_rich Low_complexity Low_complexity 1 50 0 21 0 0 0 chr4 34793734 34793755 -167534592 + AT_rich Low_complexity Low_complexity 1 21 0 287 236 110 39 chr4 34793901 34794028 -167534319 - MLT1J1 LTR MaLR -233 213 78 216 0 0 0 chr4 34794795 34794819 -167533528 + (TA)n Simple_repeat Simple_repeat 2 25 0 697 301 65 86 chr4 34795826 34796382 -167531965 - L2 LINE L2 -8 3305 2764 731 256 33 22 chr4 34796572 34796842 -167531505 - L1ME1 LINE L1 -206 5960 5688 228 185 31 0 chr4 34797078 34797143 -167531204 - L1ME1 LINE L1 -947 5199 5133 13478 147 34 3 chr4 34797143 34799396 -167528951 - Tigger1 DNA MER2_type 0 2418 96 940 297 76 13 chr4 34799406 34799959 -167528388 - L1ME1 LINE L1 -2156 3990 3403 622 274 79 13 chr4 34800044 34800361 -167527986 - L1ME1 LINE L1 -3460 2686 2349 788 299 91 40 chr4 34801249 34801624 -167526723 + L2 LINE L2 2383 2776 -538 615 277 7 0 chr4 34801735 34801876 -167526471 + Tigger3(Golem) DNA MER2_type 2 143 -2886 * 1357 191 20 0 chr4 34801872 34802124 -167526223 + Tigger3(Golem) DNA MER2_type 2771 3027 -2 619 316 65 37 chr4 34802126 34802481 -167525866 + L2 LINE L2 2941 3305 -8 345 100 0 0 chr4 34803374 34803424 -167524923 + (TA)n Simple_repeat Simple_repeat 1 50 0 2356 85 0 0 chr4 34803424 34803729 -167524618 - AluY SINE Alu -6 305 1 2198 82 0 7 chr4 34803990 34804281 -167524066 + AluY SINE Alu 5 293 -18 1389 248 17 36 chr4 34805397 34805797 -167522550 - MSTD LTR MaLR -1 370 1 2096 90 46 3 chr4 34806000 34806457 -167521890 - L1ME LINE L1 -632 5532 5075 3519 75 4 8 chr4 34806457 34806932 -167521415 + L1PA7 LINE L1 5666 6143 -11 23 86 0 0 chr4 34807252 34807310 -167521037 + AT_rich Low_complexity Low_complexity 1 58 0 21 0 0 0 chr4 34807412 34807433 -167520914 + AT_rich Low_complexity Low_complexity 1 21 0 227 278 0 100 chr4 34807801 34807891 -167520456 - L2 LINE L2 -2 3311 3231 378 59 0 0 chr4 34808129 34808180 -167520167 - MADE1 DNA Mariner 0 80 30 863 291 55 36 chr4 34809566 34810040 -167518307 - L1MEc LINE L1 -3087 3128 2646 603 288 58 40 chr4 34810076 34810712 -167517635 - L1MEc LINE L1 -3690 2525 1925 593 286 113 10 chr4 34810736 34811037 -167517310 + L1M4 LINE L1 3750 4081 -2065 515 230 184 0 chr4 34811458 34811610 -167516737 - LTR16A LTR ERVL -34 416 237 691 265 48 24 chr4 34811648 34811897 -167516450 + L1ME1 LINE L1 5904 6158 -8 208 378 37 0 chr4 34812335 34812417 -167515930 - MER5A DNA MER1_type -77 112 28 224 209 0 0 chr4 34812568 34812611 -167515736 + (CA)n Simple_repeat Simple_repeat 2 44 0 1177 187 27 42 chr4 34813070 34813332 -167515015 + AluJb SINE Alu 1 258 -54 2329 47 40 7 chr4 34813332 34813629 -167514718 + AluYa5 SINE Alu 1 307 -4 3425 157 25 8 chr4 34813941 34814541 -167513806 + L1PA15 LINE L1 5556 6165 0 869 165 81 64 chr4 34815045 34815281 -167513066 + L1MA9 LINE L1 6036 6275 -37 1600 258 68 16 chr4 34815591 34816102 -167512245 - MLT1F LTR MaLR 0 542 5 771 155 0 0 chr4 34816746 34816875 -167511472 + L1PA16 LINE L1 6029 6157 -9 22 0 0 0 chr4 34818305 34818327 -167510020 + AT_rich Low_complexity Low_complexity 1 22 0 940 335 22 11 chr4 34818403 34818773 -167509574 + LTR16A LTR ERVL 1 374 -76 462 114 0 0 chr4 34820963 34821033 -167507314 + (TG)n Simple_repeat Simple_repeat 2 71 0 300 188 0 0 chr4 34821033 34821102 -167507245 + (TA)n Simple_repeat Simple_repeat 2 70 0 306 294 0 22 chr4 34821109 34821201 -167507146 + L1MC4 LINE L1 6614 6703 -1339 212 216 20 0 chr4 34821201 34821252 -167507095 + (TA)n Simple_repeat Simple_repeat 2 53 0 214 267 17 0 chr4 34821519 34821579 -167506768 + (CATA)n Simple_repeat Simple_repeat 2 62 0 252 263 100 0 chr4 34821583 34821663 -167506684 - L1MC4 LINE L1 -1340 6702 6615 182 167 0 24 chr4 34821664 34821706 -167506641 + (CATATA)n Simple_repeat Simple_repeat 6 46 0 337 272 0 22 chr4 34821707 34821799 -167506548 - L1MC4 LINE L1 -1339 6703 6614 32 101 0 0 chr4 34822008 34822117 -167506230 + AT_rich Low_complexity Low_complexity 1 109 0 397 327 18 6 chr4 34822258 34822423 -167505924 + L1MEc LINE L1 38 204 -6192 394 293 79 12 chr4 34822456 34822620 -167505727 + L1MEc LINE L1 282 456 -5940 1491 275 85 30 chr4 34822733 34824459 -167503888 + L1MEc LINE L1 1000 2784 -3431 236 228 0 25 chr4 34824627 34824706 -167503641 + (TA)n Simple_repeat Simple_repeat 1 77 0 24 0 0 0 chr4 34825725 34825749 -167502598 + AT_rich Low_complexity Low_complexity 1 24 0 300 111 0 0 chr4 34826270 34826324 -167502023 + (GA)n Simple_repeat Simple_repeat 1 54 0 21 0 0 0 chr4 34827321 34827342 -167501005 + AT_rich Low_complexity Low_complexity 1 21 0 244 273 108 45 chr4 34827362 34827538 -167500809 - MIR SINE MIR 0 262 76 1047 220 5 0 chr4 34827600 34827809 -167500538 - MER6B DNA MER2_type 0 210 1 205 231 0 19 chr4 34827809 34827861 -167500486 + (TA)n Simple_repeat Simple_repeat 1 51 0 233 284 75 0 chr4 34828274 34828341 -167500006 + L2 LINE L2 3215 3286 -27 243 200 0 29 chr4 34828440 34828510 -167499837 + LTR66 LTR ERVL 379 446 -164 291 286 0 0 chr4 34828514 34828598 -167499749 + (TA)n Simple_repeat Simple_repeat 2 85 0 461 32 32 0 chr4 34828855 34828917 -167499430 + (TCTA)n Simple_repeat Simple_repeat 1 64 0 595 180 0 9 chr4 34828944 34829055 -167499292 + MSTA LTR MaLR 1 110 -318 1481 225 56 5 chr4 34829057 34829470 -167498877 - L1 LINE L1 -849 5297 4864 270 0 0 0 chr4 34829490 34829520 -167498827 + (CA)n Simple_repeat Simple_repeat 2 31 0 232 235 176 0 chr4 34829523 34829625 -167498722 + L1MA9 LINE L1 6170 6289 -23 230 222 86 12 chr4 34829632 34829713 -167498634 + L1MA9 LINE L1 6226 6312 0 * 320 238 24 92 chr4 34829709 34829915 -167498432 + L1MC/D LINE L1 5283 5474 -2334 311 363 76 13 chr4 34829941 34830178 -167498169 + L1MC/D LINE L1 5575 5826 -1982 22 0 0 0 chr4 34830467 34830489 -167497858 + AT_rich Low_complexity Low_complexity 1 22 0 365 267 104 40 chr4 34830636 34830838 -167497509 + L1ME3A LINE L1 5264 5478 -2330 21933 132 19 80 chr4 34831072 34835520 -167492827 + L1PA7 LINE L1 12 4187 -1959 6730 72 9 2 chr4 34835520 34837092 -167491255 + L1PA7 LINE L1 4566 6151 -3 2146 119 3 0 chr4 34837423 34837726 -167490621 - AluSq SINE Alu -9 304 1 306 349 30 25 chr4 34837806 34838004 -167490343 + L1ME3A LINE L1 5746 5944 -226 21 0 0 0 chr4 34838700 34838721 -167489626 + AT_rich Low_complexity Low_complexity 1 21 0 9049 217 33 46 chr4 34838721 34842319 -167486028 - L1MA9 LINE L1 -41 7690 4129 750 174 11 37 chr4 34842316 34842506 -167485841 - L1MA9 LINE L1 -3899 3666 3482 * 2049 141 22 33 chr4 34842542 34842910 -167485437 - THE1B LTR MaLR 0 364 1 648 249 23 80 chr4 34843133 34843473 -167484874 - L1MA9 LINE L1 -4167 3399 2835 2982 201 35 13 chr4 34843473 34844079 -167484268 + Tigger7 DNA MER2_type 1 619 -1868 1368 146 49 8 chr4 34844074 34844321 -167484026 + Tigger7 DNA MER2_type 2235 2491 0 * 2237 208 59 17 chr4 34844321 34845099 -167483248 - L1M4c LINE L1 -4466 2702 1757 371 351 50 59 chr4 34845095 34845536 -167482811 - L1M4c LINE L1 -5648 1520 1084 * 840 327 88 73 chr4 34845547 34846217 -167482130 - L1M4c LINE L1 -5902 1266 587 247 222 0 0 chr4 34846282 34846327 -167482020 - L1M4c LINE L1 -6782 386 342 645 238 20 0 chr4 34846383 34846530 -167481817 + Ricksha DNA DNA 1 150 -1104 286 159 0 48 chr4 34846522 34846585 -167481762 + ERVL LTR ERVL 5643 5702 -62 * 6892 183 57 24 chr4 34846578 34847890 -167480457 + Ricksha DNA DNA 1690 3025 -236 1783 147 61 31 chr4 34847890 34848250 -167480097 + THE1C LTR MaLR 1 371 -4 6892 183 57 24 chr4 34848250 34848482 -167479865 + Ricksha DNA DNA 3025 3248 -13 755 303 6 64 chr4 34848488 34848815 -167479532 - L1M4c LINE L1 -6857 311 4 27 29 0 0 chr4 34849222 34849256 -167479091 + AT_rich Low_complexity Low_complexity 1 34 0 253 315 162 0 chr4 34849536 34849647 -167478700 + MLT1J2 LTR MaLR 12 140 -310 2047 128 3 0 chr4 34849909 34850205 -167478142 + AluSx SINE Alu 1 297 -15 390 21 0 0 chr4 34850291 34850338 -167478009 + (TG)n Simple_repeat Simple_repeat 2 48 0 28 0 0 0 chr4 34850508 34850536 -167477811 + AT_rich Low_complexity Low_complexity 1 28 0 27 29 0 0 chr4 34851656 34851690 -167476657 + AT_rich Low_complexity Low_complexity 1 34 0 29 0 0 0 chr4 34851826 34851855 -167476492 + AT_rich Low_complexity Low_complexity 1 29 0 23 54 0 0 chr4 34852277 34852314 -167476033 + AT_rich Low_complexity Low_complexity 1 37 0 402 21 0 0 chr4 34852344 34852391 -167475956 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 2147 156 37 32 chr4 34852620 34853168 -167475179 - MLT2A2 LTR ERVL 0 554 1 21 0 0 0 chr4 34853450 34853471 -167474876 + AT_rich Low_complexity Low_complexity 1 21 0 300 163 10 20 chr4 34853693 34853791 -167474556 + (TA)n Simple_repeat Simple_repeat 2 98 0 851 200 0 27 chr4 34853915 34854100 -167474247 - L1PA13 LINE L1 -3 6160 5981 6381 193 54 11 chr4 34854102 34855795 -167472552 + L1PA13 LINE L1 1243 3081 -3716 411 314 86 59 chr4 34855930 34856220 -167472127 - L2 LINE L2 -5 3308 3011 21 0 0 0 chr4 34856354 34856375 -167471972 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr4 34856991 34857019 -167471328 + AT_rich Low_complexity Low_complexity 1 28 0 765 354 49 15 chr4 34857819 34858410 -167469937 - L2 LINE L2 -20 3293 2680 198 324 40 14 chr4 34859240 34859314 -167469033 + MIR SINE MIR 110 185 -77 24 0 0 0 chr4 34859626 34859650 -167468697 + AT_rich Low_complexity Low_complexity 1 24 0 24 32 0 0 chr4 34860108 34860139 -167468208 + AT_rich Low_complexity Low_complexity 1 31 0 193 291 0 36 chr4 34911126 34911181 -167417166 - L2 LINE L2 -9 3304 3252 1692 224 141 52 chr4 34911232 34911862 -167416485 + MER76 LTR ERV 1 686 -2 1954 129 27 0 chr4 34912409 34912704 -167415643 - AluSq SINE Alu -10 303 1 274 332 62 70 chr4 34913441 34913911 -167414436 - MLT1K LTR MaLR -31 557 92 544 327 39 10 chr4 34914767 34914972 -167413375 + MIR SINE MIR 11 221 -41 31 82 0 0 chr4 34915412 34915485 -167412862 + AT_rich Low_complexity Low_complexity 1 73 0 221 335 66 62 chr4 34916789 34917093 -167411254 + L2 LINE L2 2837 3141 -172 660 282 29 10 chr4 34917392 34917598 -167410749 + L1MB8 LINE L1 7 216 -6643 577 353 10 10 chr4 34917623 34917824 -167410523 + L1MB8 LINE L1 296 496 -6363 28 0 0 0 chr4 34917887 34917915 -167410432 + AT_rich Low_complexity Low_complexity 1 28 0 1558 214 37 19 chr4 34918040 34918419 -167409928 - MLT1B LTR MaLR -4 386 1 2151 262 56 26 chr4 34918522 34919543 -167408804 + L1MB8 LINE L1 2876 3885 -3072 3342 211 39 41 chr4 34919550 34920518 -167407829 + L1MB8 LINE L1 6021 6984 -5 3321 209 81 39 chr4 34921306 34922342 -167406005 - Tigger6a DNA MER2_type -3 1080 1 204 322 107 8 chr4 34922557 34922678 -167405669 - MIR SINE MIR -33 229 97 183 129 0 0 chr4 34922871 34922902 -167405445 + (TC)n Simple_repeat Simple_repeat 2 32 0 294 371 10 0 chr4 34922944 34923041 -167405306 + MER5A DNA MER1_type 9 106 -83 25 51 0 0 chr4 34923122 34923161 -167405186 + AT_rich Low_complexity Low_complexity 1 39 0 8045 162 15 40 chr4 34923289 34924652 -167403695 + THE1-int LTR MaLR 116 1439 -141 1842 178 35 22 chr4 34924652 34925022 -167403325 - THE1C LTR MaLR 0 375 1 8045 162 15 40 chr4 34925022 34925161 -167403186 + THE1-int LTR MaLR 1439 1580 0 1233 181 107 0 chr4 34925199 34925442 -167402905 + MSTA LTR MaLR 160 428 0 2209 224 29 13 chr4 34925442 34925561 -167402786 + L1MB4 LINE L1 5614 5730 -450 221 0 35 0 chr4 34925561 34925590 -167402757 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 2209 224 29 13 chr4 34925590 34926027 -167402320 + L1MB4 LINE L1 5730 6179 -1 524 190 0 20 chr4 34926072 34926172 -167402175 - Charlie1 DNA MER1_type -2580 181 84 458 215 98 61 chr4 34926178 34926341 -167402006 + MER20 DNA MER1_type 34 202 -17 1189 156 12 20 chr4 34927933 34928177 -167400170 - L1MA4 LINE L1 -3 6297 6056 2206 88 0 0 chr4 34928553 34928836 -167399511 - AluSc SINE Alu -10 299 17 479 300 40 29 chr4 34929203 34929553 -167398794 + L1MEd LINE L1 787 1140 -4979 1112 301 135 9 chr4 34929736 34930277 -167398070 - Zaphod DNA AcHobo -3418 613 5 28 61 0 0 chr4 34930565 34930614 -167397733 + AT_rich Low_complexity Low_complexity 1 49 0 218 340 142 20 chr4 34930633 34930880 -167397467 - L3 LINE CR1 -62 1515 1239 35 41 0 0 chr4 34931262 34931311 -167397036 + AT_rich Low_complexity Low_complexity 1 49 0 21 36 0 0 chr4 34931369 34931397 -167396950 + AT_rich Low_complexity Low_complexity 1 28 0 225 179 0 54 chr4 34931952 34932008 -167396339 + T-rich Low_complexity Low_complexity 4 56 0 22 35 0 0 chr4 34932103 34932132 -167396215 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr4 34932324 34932352 -167395995 + AT_rich Low_complexity Low_complexity 1 28 0 6940 16 0 0 chr4 34932392 34933187 -167395160 - L1PA2 LINE L1 0 6155 5361 6838 26 0 0 chr4 34933184 34934014 -167394333 + L1P LINE L1 4524 5353 -798 * 186 232 0 71 chr4 34935310 34935366 -167392981 + MER5A DNA MER1_type 125 176 -13 308 329 78 71 chr4 34935900 34936183 -167392164 - L2 LINE L2 -24 3289 3005 2109 137 3 0 chr4 34936574 34936881 -167391466 - AluSq SINE Alu -5 308 1 5120 92 108 4 chr4 34936943 34937691 -167390656 - LTR12 LTR ERV1 0 826 1 491 352 47 17 chr4 34939324 34939622 -167388725 + L2 LINE L2 796 1102 -2212 405 229 31 0 chr4 34939628 34939724 -167388623 - MER96B DNA MER1_type? -17 400 302 509 171 47 71 chr4 34939728 34939898 -167388449 + MER96B DNA MER1_type? 85 250 -167 1998 128 0 26 chr4 34940009 34940322 -167388025 + AluSq SINE Alu 3 307 -6 215 369 36 9 chr4 34941596 34941707 -167386640 - MIR SINE MIR -20 242 129 2097 121 0 0 chr4 34942929 34943238 -167385109 + AluSx SINE Alu 1 309 0 213 121 0 0 chr4 34943297 34943330 -167385017 + (GAAA)n Simple_repeat Simple_repeat 1 33 0 319 349 174 0 chr4 34943531 34943680 -167384667 - MER5A DNA MER1_type -1 188 14 677 187 8 0 chr4 34943839 34943962 -167384385 + MLT1A2 LTR MaLR 251 374 0 203 326 51 10 chr4 34944534 34944632 -167383715 + L2 LINE L2 722 823 -2491 1017 176 23 23 chr4 34944904 34945125 -167383222 + L1MA1 LINE L1 23 243 -7322 * 4721 122 65 12 chr4 34945122 34946405 -167381942 + L1MA1 LINE L1 1285 2739 -4826 14537 185 26 4 chr4 34946406 34950923 -167377424 + L1MA1 LINE L1 3106 7721 0 2236 201 68 19 chr4 34950934 34951873 -167376474 + L1MB8 LINE L1 4902 5890 -288 1995 251 59 20 chr4 34953175 34953796 -167374551 - MLT1E2 LTR MaLR -3 623 1 180 322 46 75 chr4 34953922 34954096 -167374251 + L2 LINE L2 1779 1947 -1367 2682 23 0 0 chr4 34954561 34954867 -167373480 + AluY SINE Alu 1 306 -5 343 331 53 42 chr4 34955034 34955297 -167373050 + L1MEd LINE L1 960 1225 -4894 186 43 0 0 chr4 34955401 34955424 -167372923 + (TCTA)n Simple_repeat Simple_repeat 4 26 0 301 188 31 62 chr4 34955432 34955528 -167372819 + HAL1 LINE L1 1515 1607 -900 312 389 17 6 chr4 34956439 34956614 -167371733 - MLT1K LTR MaLR -256 332 156 1620 195 63 14 chr4 34957133 34957481 -167370866 + MLT1A1 LTR MaLR 1 365 0 468 0 0 0 chr4 34958511 34958563 -167369784 + (TA)n Simple_repeat Simple_repeat 2 53 0 1609 146 113 30 chr4 34958785 34959120 -167369227 + THE1C LTR MaLR 13 375 0 9080 142 17 37 chr4 34959122 34960733 -167367614 + THE1C-int LTR MaLR 3 1580 0 1166 212 132 15 chr4 34960733 34961059 -167367288 + THE1B LTR MaLR 1 364 0 680 350 13 1 chr4 34961061 34961279 -167367068 + LTR16A LTR ERVL 156 384 -73 26 30 0 0 chr4 34962045 34962078 -167366269 + AT_rich Low_complexity Low_complexity 1 33 0 207 275 84 30 chr4 34962407 34962538 -167365809 - L2 LINE L2 -831 2483 2346 225 294 76 11 chr4 34963010 34963102 -167365245 - MLT1L LTR MaLR -517 98 1 222 242 15 0 chr4 34963190 34963256 -167365091 + (TA)n Simple_repeat Simple_repeat 1 67 0 360 0 0 0 chr4 34963278 34963318 -167365029 + (TA)n Simple_repeat Simple_repeat 2 41 0 32 43 0 0 chr4 34964534 34964580 -167363767 + AT_rich Low_complexity Low_complexity 1 46 0 319 184 13 66 chr4 34965676 34965752 -167362595 - MLT1I LTR MaLR 0 409 338 287 298 8 23 chr4 34966770 34966901 -167361446 + HAL1b LINE L1 227 355 -993 242 250 31 0 chr4 34967025 34967089 -167361258 + LTR50 LTR ERVL 714 779 -16 6512 246 42 14 chr4 34967183 34969425 -167358922 - L1MC1 LINE L1 0 7128 4619 1589 165 7 34 chr4 34969425 34969740 -167358607 - AluSx SINE Alu 0 307 1 6512 246 42 14 chr4 34969740 34970441 -167357906 - L1MC1 LINE L1 -2509 4619 3939 1270 251 72 40 chr4 34970789 34971020 -167357327 - Charlie1b DNA MER1_type -2244 517 295 1782 175 3 19 chr4 34971020 34971334 -167357013 - AluSx SINE Alu -3 309 1 1270 251 72 40 chr4 34971334 34971603 -167356744 - Charlie1b DNA MER1_type -2466 295 1 239 338 14 104 chr4 34971604 34971826 -167356521 + L2 LINE L2 2579 2780 -534 22 70 0 0 chr4 34972843 34972886 -167355461 + AT_rich Low_complexity Low_complexity 1 43 0 875 248 52 31 chr4 34973315 34973734 -167354613 - L1M4 LINE L1 -2805 3341 2914 303 290 37 0 chr4 34973749 34973856 -167354491 - L1M4 LINE L1 -2663 3483 3373 1311 274 58 40 chr4 34973863 34974138 -167354209 - MLT1F1 LTR MaLR 0 567 279 1651 29 0 14 chr4 34974138 34974339 -167354008 + L1PA5 LINE L1 5945 6144 -10 201 74 0 0 chr4 34974339 34974366 -167353981 + (TA)n Simple_repeat Simple_repeat 1 27 0 1311 274 58 40 chr4 34974373 34974543 -167353804 - MLT1F1 LTR MaLR -288 279 114 229 253 53 13 chr4 34974562 34974637 -167353710 - L1MC1 LINE L1 -4338 2784 2707 575 267 84 68 chr4 34974645 34975087 -167353260 - L1MC1 LINE L1 -4656 2466 2018 330 286 23 30 chr4 34975106 34975239 -167353108 - L1MC1 LINE L1 -5120 1811 1680 261 267 69 0 chr4 34975243 34975344 -167353003 - L1MC1 LINE L1 -4905 1518 1411 469 202 0 19 chr4 34975446 34975550 -167352797 - L1MA10 LINE L1 -3 6331 6230 446 300 63 21 chr4 34976023 34976260 -167352087 - L1MC1 LINE L1 -6080 1042 796 1921 99 48 7 chr4 34976654 34976927 -167351420 + AluSg SINE Alu 12 295 -15 405 279 167 56 chr4 34977939 34978459 -167349888 - L1ME3A LINE L1 -11 6159 5582 1913 197 106 9 chr4 34978459 34978885 -167349462 - MLT1D LTR MaLR 0 505 39 225 94 0 0 chr4 34979106 34979138 -167349209 + (TG)n Simple_repeat Simple_repeat 1 32 0 456 133 13 0 chr4 34979144 34979219 -167349128 - MADE1 DNA Mariner -3 77 2 2016 141 0 10 chr4 34979271 34979576 -167348771 + AluSx SINE Alu 1 302 -10 2030 287 70 31 chr4 34980854 34982446 -167345901 + L1ME LINE L1 141 1738 -4477 339 353 13 0 chr4 34982716 34982866 -167345481 + L1ME LINE L1 2171 2322 -4074 22 56 0 0 chr4 34984031 34984067 -167344280 + AT_rich Low_complexity Low_complexity 1 36 0 2209 91 0 0 chr4 34984282 34984579 -167343768 + AluY SINE Alu 1 297 -14 22 56 0 0 chr4 34985440 34985476 -167342871 + AT_rich Low_complexity Low_complexity 1 36 0 360 0 0 0 chr4 34985989 34986029 -167342318 + (TATATG)n Simple_repeat Simple_repeat 5 44 0 225 220 34 0 chr4 34986432 34986491 -167341856 + (TATATG)n Simple_repeat Simple_repeat 4 64 0 1753 196 0 6 chr4 34987438 34987750 -167340597 + AluJo SINE Alu 1 310 -2 180 77 0 0 chr4 34989113 34989139 -167339208 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 2785 142 13 23 chr4 34989155 34989684 -167338663 - L1MA5A LINE L1 -7 6290 5767 205 118 39 0 chr4 34989684 34989735 -167338612 + (TA)n Simple_repeat Simple_repeat 1 53 0 667 177 8 0 chr4 34989739 34989863 -167338484 - L1MA5A LINE L1 -508 5789 5665 * 8080 193 30 23 chr4 34989853 34990841 -167337506 + L1M2 LINE L1 3442 4422 -1875 1000 215 113 58 chr4 34990841 34990946 -167337401 + AluJb SINE Alu 1 99 -203 243 0 0 0 chr4 34990946 34990973 -167337374 + (CA)n Simple_repeat Simple_repeat 2 28 0 1000 215 113 58 chr4 34990973 34991141 -167337206 + AluJb SINE Alu 99 289 -13 8080 193 30 23 chr4 34991141 34992350 -167335997 + L1M2 LINE L1 4422 5660 -637 22 0 0 0 chr4 34992870 34992892 -167335455 + AT_rich Low_complexity Low_complexity 1 22 0 252 0 0 0 chr4 34992959 34992987 -167335360 + (TG)n Simple_repeat Simple_repeat 1 28 0 703 222 45 10 chr4 34993282 34993480 -167334867 + MER3 DNA MER1_type 5 209 0 22 56 0 0 chr4 34993728 34993764 -167334583 + AT_rich Low_complexity Low_complexity 1 36 0 732 315 34 25 chr4 34994546 34994870 -167333477 - LTR16A LTR ERVL -107 343 17 342 324 38 47 chr4 34995016 34995364 -167332983 - ERVL LTR ERVL -310 5344 5040 870 368 68 17 chr4 34995415 34996160 -167332187 - ERVL LTR ERVL -757 4897 4115 287 388 37 18 chr4 34996426 34996699 -167331648 - ERVL LTR ERVL -1807 3847 3570 27 0 0 0 chr4 34996882 34996909 -167331438 + AT_rich Low_complexity Low_complexity 1 27 0 1427 219 12 6 chr4 34996920 34997245 -167331102 + L1MB3 LINE L1 5779 6105 -78 46 0 0 0 chr4 34997245 34997291 -167331056 + AT_rich Low_complexity Low_complexity 1 46 0 405 252 36 0 chr4 34997771 34997882 -167330465 - MIR SINE MIR -43 219 105 210 181 56 0 chr4 34998499 34998571 -167329776 + (TA)n Simple_repeat Simple_repeat 1 76 0 180 0 0 0 chr4 34998609 34998629 -167329718 + (CA)n Simple_repeat Simple_repeat 2 21 0 23 0 0 0 chr4 34999012 34999035 -167329312 + AT_rich Low_complexity Low_complexity 1 23 0 254 360 29 14 chr4 34999364 34999503 -167328844 - MIR3 SINE MIR -1 207 67 307 268 138 32 chr4 34999870 34999993 -167328354 + MIR SINE MIR 111 246 -16 3186 60 0 0 chr4 35000155 35000555 -167327792 - L1PA7 LINE L1 -1 6153 5754 216 67 0 0 chr4 35001153 35001183 -167327164 + (ATG)n Simple_repeat Simple_repeat 1 30 0 22 0 0 0 chr4 35002548 35002570 -167325777 + AT_rich Low_complexity Low_complexity 1 22 0 1014 192 100 0 chr4 35002570 35002831 -167325516 - MER33 DNA MER1_type -36 288 2 23 0 0 0 chr4 35003037 35003060 -167325287 + AT_rich Low_complexity Low_complexity 1 23 0 605 322 22 32 chr4 35003061 35003375 -167324972 - L1ME3A LINE L1 0 6170 5860 2068 243 50 17 chr4 35003434 35003973 -167324374 + MER90 LTR ERV1 1 557 -57 369 0 0 0 chr4 35006421 35006462 -167321885 + (TG)n Simple_repeat Simple_repeat 2 42 0 287 283 119 96 chr4 35006980 35007199 -167321148 + MIR SINE MIR 12 235 -27 28 91 0 0 chr4 35007460 35007537 -167320810 + AT_rich Low_complexity Low_complexity 1 77 0 1354 194 75 65 chr4 35008000 35008396 -167319951 + MLT1B LTR MaLR 2 390 0 2118 131 0 0 chr4 35008541 35008832 -167319515 - AluSx SINE Alu -17 295 5 2135 172 50 8 chr4 35008895 35009297 -167319050 + MSTB1 LTR MaLR 14 432 0 279 323 30 0 chr4 35010021 35010120 -167318227 + MLT1I LTR MaLR 37 138 -271 291 324 37 27 chr4 35012331 35012488 -167315859 - MIR SINE MIR -98 164 8 308 58 0 58 chr4 35013436 35013488 -167314859 + (TAAAA)n Simple_repeat Simple_repeat 2 50 0 260 333 139 9 chr4 35013493 35013601 -167314746 + MIR SINE MIR 8 129 -133 324 333 13 67 chr4 35013925 35014150 -167314197 + MLT1J LTR MaLR 247 459 -52 328 157 0 14 chr4 35014307 35014377 -167313970 + L1MA6 LINE L1 6226 6294 -6 2247 297 62 8 chr4 35015038 35016245 -167312102 - L1M4 LINE L1 -1569 4577 3306 29 0 0 0 chr4 35016245 35016274 -167312073 + AT_rich Low_complexity Low_complexity 1 29 0 277 321 54 0 chr4 35017073 35017180 -167311167 - MIR SINE MIR -65 143 45 183 289 20 105 chr4 35018877 35019029 -167309318 + MIR SINE MIR 65 203 -59 794 262 66 4 chr4 35019203 35019447 -167308900 - L1MB7 LINE L1 -8 6176 5918 28 61 0 0 chr4 35019463 35019512 -167308835 + AT_rich Low_complexity Low_complexity 1 49 0 500 202 70 0 chr4 35019531 35019645 -167308702 - L1MB7 LINE L1 -263 5911 5790 279 274 118 9 chr4 35019653 35019865 -167308482 - L1MDa LINE L1 -2752 3892 3658 21 71 0 0 chr4 35019891 35019933 -167308414 + AT_rich Low_complexity Low_complexity 1 42 0 1699 162 173 6 chr4 35020000 35020365 -167307982 - MSTA LTR MaLR -2 426 1 4925 174 9 17 chr4 35020365 35021229 -167307118 - THE1B-int LTR MaLR 0 1580 724 381 211 0 0 chr4 35021237 35021308 -167307039 - MER76 LTR ERV -534 154 84 991 122 6 33 chr4 35021308 35021471 -167306876 - THE1B-int LTR MaLR -1475 176 17 2138 128 54 20 chr4 35021471 35021823 -167306524 - THE1B LTR MaLR 0 364 1 991 122 6 33 chr4 35021823 35021840 -167306507 - THE1B-int LTR MaLR -1634 17 1 2090 138 138 5 chr4 35021840 35022217 -167306130 - MSTA LTR MaLR 0 428 2 1840 250 80 38 chr4 35022233 35023197 -167305150 - L1MDa LINE L1 -3115 3529 2523 2064 276 17 31 chr4 35023407 35023694 -167304653 - L1MDa LINE L1 -4570 2076 1787 2548 161 13 11 chr4 35023694 35024154 -167304193 + L1PA16 LINE L1 5704 6164 -2 2064 276 17 31 chr4 35024154 35024611 -167303736 - L1MDa LINE L1 -4859 1787 1342 823 221 70 18 chr4 35024605 35024890 -167303457 - L1MD3 LINE L1 0 7995 7696 * 708 97 9 18 chr4 35024889 35025002 -167303345 - L1PBa LINE L1 -6116 747 636 * 1053 158 20 0 chr4 35025004 35025200 -167303147 - L1PBa LINE L1 -6663 200 1 3506 253 48 43 chr4 35025203 35026561 -167301786 - L1MDa LINE L1 -5166 1376 12 23 0 0 0 chr4 35026766 35026789 -167301558 + AT_rich Low_complexity Low_complexity 1 23 0 200 132 0 26 chr4 35026870 35026908 -167301439 + (CAAAAA)n Simple_repeat Simple_repeat 1 37 0 23 0 0 0 chr4 35027078 35027101 -167301246 + AT_rich Low_complexity Low_complexity 1 23 0 192 361 17 8 chr4 35027665 35027784 -167300563 - L3 LINE CR1 -364 1213 1094 2106 166 78 2 chr4 35027845 35028243 -167300104 - MSTC LTR MaLR 0 428 1 287 305 15 0 chr4 35028335 35028421 -167299926 + MIR SINE MIR 31 119 -89 192 395 9 9 chr4 35028410 35028519 -167299828 - L2 LINE L2 -619 2695 2587 * 196 393 55 21 chr4 35028533 35028678 -167299669 - L2 LINE L2 -20 3252 3103 522 280 40 0 chr4 35028716 35028866 -167299481 - L3 LINE CR1 -490 1087 932 1443 225 95 72 chr4 35029537 35029552 -167298795 + MLT2B2 LTR ERVL 8 21 -494 2765 196 48 54 chr4 35029552 35030278 -167298069 + MER72 LTR ERV1 1 722 0 1443 225 95 72 chr4 35030278 35030747 -167297600 + MLT2B2 LTR ERVL 21 503 -12 6838 216 33 40 chr4 35030755 35031096 -167297251 + ERVL-B2 LTR ERVL 2 344 -5420 627 135 63 0 chr4 35031096 35031222 -167297125 + L1MA7 LINE L1 6158 6291 0 6838 216 33 40 chr4 35031222 35032497 -167295850 + ERVL-B2 LTR ERVL 344 1607 -4157 * 10410 197 29 37 chr4 35032490 35033213 -167295134 + ERVL LTR ERVL 3279 4007 -1757 540 65 0 0 chr4 35033213 35033290 -167295057 + (CA)n Simple_repeat Simple_repeat 2 78 0 10410 197 29 37 chr4 35033290 35034111 -167294236 + ERVL LTR ERVL 4007 4801 -963 2077 124 3 3 chr4 35034111 35034409 -167293938 + AluSq SINE Alu 1 298 -15 10410 197 29 37 chr4 35034409 35035030 -167293317 + ERVL LTR ERVL 4801 5426 -338 243 61 0 0 chr4 35035040 35035073 -167293274 + (CA)n Simple_repeat Simple_repeat 2 34 0 226 133 0 67 chr4 35035073 35035107 -167293240 + MLT2B1 LTR ERVL 481 513 -7 448 326 44 11 chr4 35035841 35036022 -167292325 + MIR SINE MIR 2 188 -74 713 279 53 11 chr4 35036034 35036296 -167292051 - LTR52 LTR ERVL -3 418 146 453 246 8 30 chr4 35036325 35036459 -167291888 - LTR52 LTR ERVL -266 155 25 2021 95 0 0 chr4 35036473 35036735 -167291612 - AluSq SINE Alu -14 299 38 307 213 88 0 chr4 35036873 35036953 -167291394 - LTR52-int LTR ERVL -2480 3205 3119 3598 279 49 12 chr4 35036959 35038035 -167290312 - LTR52-int LTR ERVL -239 3317 1658 3822 264 50 26 chr4 35038119 35038856 -167289491 - LTR52-int LTR ERVL -1489 2067 1286 1979 148 42 28 chr4 35038856 35039215 -167289132 - THE1B LTR MaLR 0 364 1 3822 264 50 26 chr4 35039215 35039724 -167288623 - LTR52-int LTR ERVL -2270 1286 791 2464 251 29 43 chr4 35039733 35040413 -167287934 - LTR52-int LTR ERVL -2885 671 1 1241 246 57 37 chr4 35040420 35040823 -167287524 - LTR52 LTR ERVL -10 411 1 253 298 37 102 chr4 35040897 35041112 -167287235 - MLT1J LTR MaLR -200 311 111 1322 297 34 51 chr4 35042739 35043373 -167284974 + L1M3e LINE L1 1 1801 -5229 1702 213 43 9 chr4 35043377 35043823 -167284524 + L1M3e LINE L1 2058 2518 -4519 4646 31 0 0 chr4 35043855 35044401 -167283946 - L1PA4 LINE L1 -183 5972 5427 1272 65 0 0 chr4 35044401 35044563 -167283784 + L1PA4 LINE L1 5988 6155 0 5777 240 72 30 chr4 35044566 35047228 -167281119 + L1M4c LINE L1 1405 4204 -2178 346 131 0 0 chr4 35047231 35047292 -167281055 + L1MA9 LINE L1 6250 6310 -2 24 0 0 0 chr4 35047298 35047322 -167281025 + AT_rich Low_complexity Low_complexity 1 24 0 226 77 0 0 chr4 35048031 35048070 -167280277 - AluY SINE Alu 0 302 264 1485 29 6 0 chr4 35048078 35048249 -167280098 - AluY SINE Alu -139 172 1 2554 29 7 26 chr4 35048272 35048582 -167279765 - AluY SINE Alu -2 309 6 1910 123 0 14 chr4 35048951 35049260 -167279087 + AluY SINE Alu 1 305 0 21 57 0 0 chr4 35049556 35049591 -167278756 + AT_rich Low_complexity Low_complexity 1 35 0 730 226 210 20 chr4 35049728 35049923 -167278424 - MSTD LTR MaLR 0 396 165 4555 106 24 69 chr4 35049923 35050754 -167277593 - L1P LINE L1 -925 5221 4428 6747 65 11 0 chr4 35050755 35051642 -167276705 + L1PA7 LINE L1 5258 6154 0 542 14 0 0 chr4 35052207 35052276 -167276071 + L1PA2 LINE L1 6087 6155 0 1554 243 12 3 chr4 35054494 35054840 -167273507 - MLT1A1 LTR MaLR -16 349 1 1151 181 70 0 chr4 35056364 35056579 -167271768 - AluJo SINE Alu -82 230 1 362 137 0 14 chr4 35056699 35056772 -167271575 + (TA)n Simple_repeat Simple_repeat 1 72 0 23 0 0 0 chr4 35057175 35057198 -167271149 + AT_rich Low_complexity Low_complexity 1 23 0 294 29 0 86 chr4 35057217 35057287 -167271060 + (TA)n Simple_repeat Simple_repeat 1 64 0 219 50 17 83 chr4 35057388 35057448 -167270899 + (TA)n Simple_repeat Simple_repeat 1 56 0 459 167 18 88 chr4 35058108 35058222 -167270125 - MLT1D LTR MaLR -399 106 1 3993 110 33 16 chr4 35058647 35059275 -167269072 + L1PA13 LINE L1 5524 6162 -1 26 30 0 0 chr4 35059519 35059552 -167268795 + AT_rich Low_complexity Low_complexity 1 33 0 333 417 38 29 chr4 35059685 35060265 -167268082 + L2 LINE L2 814 1398 -1916 1611 184 51 24 chr4 35060502 35060838 -167267509 - MER7A DNA MER2_type 0 346 4 5972 123 41 34 chr4 35060887 35061950 -167266397 + MER11C LTR ERVK 1 1071 0 2544 78 0 0 chr4 35061950 35062269 -167266078 + HERVK11 LTR ERVK 1 319 -7634 1018 99 0 0 chr4 35062267 35062418 -167265929 + HERVK11 LTR ERVK 796 946 -7007 * 751 324 31 22 chr4 35063152 35063476 -167264871 - LTR16A LTR ERVL -107 343 17 3002 293 66 12 chr4 35065367 35066392 -167261955 - LTR16A-int LTR ERVL -239 3317 2237 1776 196 0 6 chr4 35066984 35067296 -167261051 + AluJo SINE Alu 1 310 -2 1199 221 75 4 chr4 35067921 35068175 -167260172 + MLT1A1 LTR MaLR 94 365 0 180 0 0 0 chr4 35069301 35069321 -167259026 + (C)n Simple_repeat Simple_repeat 1 20 0 422 220 82 25 chr4 35069440 35069599 -167258748 + THE1B LTR MaLR 12 179 -185 222 279 49 0 chr4 35269790 35269851 -167058496 + L2 LINE L2 3240 3303 -10 200 200 17 0 chr4 35270666 35270726 -167057621 + (TA)n Simple_repeat Simple_repeat 2 62 0 505 266 4 87 chr4 35270754 35270983 -167057364 - MER58C DNA MER1_type -4 211 2 228 111 0 0 chr4 35271367 35271403 -167056944 + (T)n Simple_repeat Simple_repeat 1 36 0 1160 225 51 30 chr4 35271403 35271771 -167056576 + MLT2D LTR ERVL 90 464 0 635 256 18 0 chr4 35271782 35271950 -167056397 + MLT1F1 LTR MaLR 397 567 0 1070 99 6 0 chr4 35272129 35272291 -167056056 - L1PA13 LINE L1 -4 6159 5997 279 154 0 0 chr4 35273331 35273396 -167054951 + GA-rich Low_complexity Low_complexity 1 65 0 346 245 117 58 chr4 35274587 35274775 -167053572 + L1M2 LINE L1 1732 1930 -4919 1545 215 10 56 chr4 35274792 35275201 -167053146 - MSTD LTR MaLR -4 392 3 382 290 48 7 chr4 35277379 35277524 -167050823 - MLT1C LTR MaLR -231 236 86 822 168 0 0 chr4 35277524 35277661 -167050686 - AluSg/x SINE Alu -6 306 170 817 293 35 32 chr4 35278161 35278211 -167050136 + L1MDa LINE L1 34 82 -6458 435 38 0 0 chr4 35278211 35278264 -167050083 + (CA)n Simple_repeat Simple_repeat 2 54 0 817 293 35 32 chr4 35278264 35278527 -167049820 + L1MDa LINE L1 82 348 -6192 2397 60 24 0 chr4 35279668 35279966 -167048381 - AluY SINE Alu -6 305 1 2044 174 33 33 chr4 35280360 35280909 -167047438 - MLT2A1 LTR ERVL 0 554 1 1968 138 3 7 chr4 35281148 35281446 -167046901 - AluSp SINE Alu -16 297 1 1275 245 53 39 chr4 35281493 35281905 -167046442 - LTR52 LTR ERVL -3 418 1 282 346 77 0 chr4 35282516 35282620 -167045727 + L2 LINE L2 3197 3308 -5 1218 256 55 101 chr4 35282801 35283378 -167044969 - MLT1E LTR MaLR 0 593 43 226 71 24 24 chr4 35283741 35283783 -167044564 + (TA)n Simple_repeat Simple_repeat 1 42 0 1875 194 25 11 chr4 35283792 35284153 -167044194 - MLT2D LTR ERVL -48 366 1 303 82 33 16 chr4 35284876 35284937 -167043410 + (TA)n Simple_repeat Simple_repeat 1 62 0 390 257 64 43 chr4 35286249 35286389 -167041958 + MLT1K LTR MaLR 405 547 -41 304 301 71 18 chr4 35287792 35287905 -167040442 - L2 LINE L2 -5 3267 3149 191 243 0 0 chr4 35288727 35288764 -167039583 + L2 LINE L2 3234 3270 -2 215 208 42 0 chr4 35289083 35289131 -167039216 + (TATG)n Simple_repeat Simple_repeat 3 52 0 338 319 5 69 chr4 35289972 35290176 -167038171 - L2 LINE L2 0 3313 3123 184 207 0 0 chr4 35290214 35290243 -167038104 - MER5A DNA MER1_type 0 189 161 2136 144 13 0 chr4 35290243 35290618 -167037729 + L1M1 LINE L1 2830 3209 -4356 189 94 0 0 chr4 35290954 35290986 -167037361 + (A)n Simple_repeat Simple_repeat 1 32 0 21 0 0 0 chr4 35292262 35292283 -167036064 + AT_rich Low_complexity Low_complexity 1 21 0 476 219 4 201 chr4 35292347 35292616 -167035731 - MIR SINE MIR 0 262 47 416 293 14 36 chr4 35293308 35293448 -167034899 + MIR SINE MIR 56 192 -70 22 35 0 0 chr4 35293641 35293670 -167034677 + AT_rich Low_complexity Low_complexity 1 29 0 3309 326 116 26 chr4 35293890 35295734 -167032613 + L2 LINE L2 34 2064 -1250 243 0 0 0 chr4 35295734 35295761 -167032586 + (CA)n Simple_repeat Simple_repeat 2 28 0 3309 326 116 26 chr4 35295761 35295863 -167032484 + L2 LINE L2 2064 2155 -1159 223 400 60 30 chr4 35296490 35296920 -167031427 + L2 LINE L2 2298 2740 -574 22 0 0 0 chr4 35297042 35297064 -167031283 + AT_rich Low_complexity Low_complexity 1 22 0 231 422 50 6 chr4 35297091 35297252 -167031095 + L2 LINE L2 3101 3268 -4 456 258 60 57 chr4 35297303 35297636 -167030711 + L1MC4a LINE L1 5641 5974 -1834 548 305 61 15 chr4 35297642 35298036 -167030311 - L1MC4 LINE L1 -561 7481 7070 1006 191 10 0 chr4 35298055 35298254 -167030093 - MER47A DNA MER2_type -3 363 163 1066 168 0 11 chr4 35298273 35298464 -167029883 - MER47A DNA MER2_type -177 189 1 819 233 58 51 chr4 35298473 35298748 -167029599 - L1MC4 LINE L1 -976 7066 6790 606 258 56 20 chr4 35298755 35298953 -167029394 - MLT1F LTR MaLR 0 542 338 284 265 85 42 chr4 35299058 35299247 -167029100 + L1MC4a LINE L1 6186 6382 -1426 200 216 0 0 chr4 35299348 35299385 -167028962 + (CATA)n Simple_repeat Simple_repeat 3 39 0 25446 70 5 4 chr4 35299430 35303627 -167024720 + L1PA6 LINE L1 1938 6141 -13 2033 182 14 5 chr4 35303632 35304000 -167024347 + MER65A LTR ERV1 75 445 0 440 47 0 16 chr4 35304005 35304069 -167024278 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 348 284 29 20 chr4 35304075 35304177 -167024170 + L1MC4 LINE L1 6681 6783 -1259 458 311 61 6 chr4 35304183 35304347 -167024000 + MLT1F LTR MaLR 1 173 -369 343 264 30 23 chr4 35304520 35304685 -167023662 + LTR43 LTR ERV1 155 472 -207 1169 234 130 24 chr4 35304851 35305189 -167023158 + MLT1F LTR MaLR 169 542 0 2693 226 43 71 chr4 35305189 35305656 -167022691 + L1MC4 LINE L1 6783 7261 -781 1690 136 0 12 chr4 35305656 35305907 -167022440 - AluSq SINE Alu -17 296 49 2693 226 43 71 chr4 35305907 35306454 -167021893 + L1MC4 LINE L1 7261 7769 -273 1236 117 0 28 chr4 35306471 35306651 -167021696 - AluSg SINE Alu -17 295 121 27 0 0 0 chr4 35307099 35307126 -167021221 + AT_rich Low_complexity Low_complexity 1 27 0 999 102 0 0 chr4 35309213 35309341 -167019006 - AluSg SINE Alu -179 131 4 306 283 24 117 chr4 35309344 35309634 -167018713 + L1MC4 LINE L1 7780 8042 0 2436 53 0 13 chr4 35309968 35310272 -167018075 + AluY SINE Alu 2 301 -10 309 89 0 0 chr4 35311130 35311175 -167017172 + (CA)n Simple_repeat Simple_repeat 2 46 0 2430 73 0 13 chr4 35312435 35312750 -167015597 - AluY SINE Alu 0 311 1 21 21 0 64 chr4 35315892 35315939 -167012408 + AT_rich Low_complexity Low_complexity 1 44 0 1031 200 162 43 chr4 35316797 35317142 -167011205 - MLT1B LTR MaLR 0 390 5 643 71 0 0 chr4 35317402 35317486 -167010861 + L1PA7 LINE L1 6065 6148 -6 253 231 33 11 chr4 35318576 35318667 -167009680 + (TA)n Simple_repeat Simple_repeat 2 94 0 1351 264 92 44 chr4 35318750 35319659 -167008688 + L1ME3 LINE L1 5115 6066 -96 904 204 6 0 chr4 35319661 35319833 -167008514 - AluJ SINE Alu -11 301 129 713 203 8 0 chr4 35319874 35320007 -167008340 - AluJ SINE Alu -178 134 1 225 156 62 62 chr4 35320074 35320138 -167008209 + L1ME3 LINE L1 6099 6162 0 2019 92 0 10 chr4 35320145 35320438 -167007909 + AluY SINE Alu 1 290 -21 223 264 0 0 chr4 35320512 35320565 -167007782 + (TATATG)n Simple_repeat Simple_repeat 1 53 0 180 0 0 0 chr4 35320569 35320589 -167007758 + (CA)n Simple_repeat Simple_repeat 1 20 0 1673 167 38 20 chr4 35320826 35321167 -167007180 + MER7A DNA MER2_type 1 345 -1 744 73 128 0 chr4 35321202 35321311 -167007036 + AluSg/x SINE Alu 176 298 -14 990 211 48 0 chr4 35321328 35321536 -167006811 - L1MC4 LINE L1 -375 7667 7450 255 254 0 0 chr4 35322488 35322551 -167005796 - MLT1J LTR MaLR 0 511 449 265 190 52 0 chr4 35322592 35322650 -167005697 - MLT1F LTR MaLR -18 524 464 280 339 6 36 chr4 35322862 35323030 -167005317 - MLT1J LTR MaLR -348 163 1 294 145 16 54 chr4 35324051 35324237 -167004110 + (TA)n Simple_repeat Simple_repeat 1 179 0 517 139 29 7 chr4 35324302 35324345 -167004002 + (TA)n Simple_repeat Simple_repeat 2 43 -98 2319 62 0 10 chr4 35324345 35324634 -167003713 + AluSc SINE Alu 1 286 -23 517 139 29 7 chr4 35324634 35324727 -167003620 + (TA)n Simple_repeat Simple_repeat 43 141 0 187 367 61 34 chr4 35325418 35325565 -167002782 - MIR SINE MIR -31 231 81 351 96 0 0 chr4 35327771 35327823 -167000524 + (GGGA)n Simple_repeat Simple_repeat 4 55 0 191 125 50 75 chr4 35328267 35328307 -167000040 - MER5A DNA MER1_type 0 189 151 385 295 212 0 chr4 35328969 35329162 -166999185 + MIR SINE MIR 12 245 -17 1156 137 57 0 chr4 35329795 35330007 -166998340 + L1MA3 LINE L1 6082 6305 0 21 0 0 0 chr4 35330480 35330501 -166997846 + AT_rich Low_complexity Low_complexity 1 21 0 1683 273 63 49 chr4 35330937 35331570 -166996777 + L1M2b LINE L1 1 642 -6567 1150 270 104 17 chr4 35331565 35331754 -166996593 + L1M2b LINE L1 1630 1801 -5408 * 180 0 0 0 chr4 35331754 35331774 -166996573 + (CAA)n Simple_repeat Simple_repeat 1 20 0 1150 270 104 17 chr4 35331774 35332057 -166996290 + L1M2b LINE L1 1801 2116 -5093 2022 194 146 11 chr4 35332060 35332658 -166995689 + L1M2b LINE L1 1908 2612 -4597 2668 203 31 18 chr4 35332660 35333314 -166995033 + L1M2b LINE L1 4376 5037 -2171 1211 202 39 10 chr4 35333324 35333636 -166994711 + L1M2b LINE L1 5296 5616 -1592 247 240 27 0 chr4 35333934 35334009 -166994338 - L1ME LINE L1 -419 5751 5675 * 651 256 110 31 chr4 35334000 35334339 -166994008 - L1M1 LINE L1 -579 5585 5285 183 376 56 34 chr4 35334542 35334808 -166993539 - L2 LINE L2 -604 2710 2439 576 136 29 0 chr4 35334948 35335051 -166993296 + MER61B LTR ERV1 1 106 -319 * 1370 177 52 18 chr4 35335038 35335332 -166993015 + MER61B LTR ERV1 27 396 -10 729 338 116 57 chr4 35335340 35336455 -166991892 - L2 LINE L2 -1145 2169 990 457 313 56 45 chr4 35336951 35337149 -166991198 - MIR SINE MIR -54 208 9 1711 160 3 3 chr4 35338766 35339068 -166989279 + AluSx SINE Alu 1 302 0 21 36 0 0 chr4 35339389 35339417 -166988930 + AT_rich Low_complexity Low_complexity 1 28 0 237 348 54 0 chr4 35341208 35341300 -166987047 - MIR SINE MIR -43 219 123 269 100 20 0 chr4 35341472 35341522 -166986825 + (GA)n Simple_repeat Simple_repeat 2 52 0 21 36 0 0 chr4 35342235 35342263 -166986084 + AT_rich Low_complexity Low_complexity 1 28 0 423 0 0 0 chr4 35342562 35342609 -166985738 + (TA)n Simple_repeat Simple_repeat 1 47 0 198 0 0 0 chr4 35342608 35342630 -166985717 + (GA)n Simple_repeat Simple_repeat 2 23 0 * 22 35 0 0 chr4 35343180 35343209 -166985138 + AT_rich Low_complexity Low_complexity 1 29 0 433 83 0 28 chr4 35343210 35343282 -166985065 + (TA)n Simple_repeat Simple_repeat 2 71 0 261 0 0 0 chr4 35343306 35343335 -166985012 + (GA)n Simple_repeat Simple_repeat 2 30 0 2629 234 69 83 chr4 35344960 35345729 -166982618 + L1MC4 LINE L1 5979 6762 -1126 2032 78 4 0 chr4 35345729 35345985 -166982362 + AluSc SINE Alu 1 257 -52 2629 234 69 83 chr4 35345985 35346542 -166981805 + L1MC4 LINE L1 6762 7326 -562 2118 168 10 37 chr4 35346542 35346947 -166981400 + MSTC LTR MaLR 1 394 -34 1877 105 8 8 chr4 35346947 35347252 -166981095 + AluSc SINE Alu 13 317 0 1617 240 108 59 chr4 35347253 35347936 -166980411 + L1MC4 LINE L1 7319 8035 -7 2587 180 35 35 chr4 35347936 35348448 -166979899 + MLT2B2 LTR ERVL 2 513 -2 1127 182 141 25 chr4 35348473 35348715 -166979632 + AluJb SINE Alu 16 285 -27 26 30 0 0 chr4 35348716 35348749 -166979598 + AT_rich Low_complexity Low_complexity 1 33 0 24 0 0 0 chr4 35349132 35349156 -166979191 + AT_rich Low_complexity Low_complexity 1 24 0 309 109 0 0 chr4 35350615 35350661 -166977686 + (CA)n Simple_repeat Simple_repeat 2 47 0 2119 191 2 44 chr4 35350661 35351111 -166977236 + Tigger2a DNA MER2_type 4 434 0 728 82 15 74 chr4 35351117 35351252 -166977095 - MLT2C2 LTR ERVL -333 131 5 2226 211 22 17 chr4 35351312 35351852 -166976495 + MER67A LTR ERV1 1 543 0 23 0 0 0 chr4 35351918 35351941 -166976406 + AT_rich Low_complexity Low_complexity 1 23 0 2944 144 41 2 chr4 35352900 35353393 -166974954 - MER75 DNA T2_type -1 513 2 23 0 0 0 chr4 35355022 35355045 -166973302 + AT_rich Low_complexity Low_complexity 1 23 0 239 27 0 54 chr4 35357490 35357527 -166970820 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 28 79 0 0 chr4 35358057 35358120 -166970227 + AT_rich Low_complexity Low_complexity 1 63 0 2075 225 70 6 chr4 35358148 35358623 -166969724 - MLT1D LTR MaLR 0 505 1 228 209 75 30 chr4 35358654 35358721 -166969626 - MIR SINE MIR -81 181 112 302 284 9 18 chr4 35359518 35359627 -166968720 + (CATATA)n Simple_repeat Simple_repeat 5 112 0 287 273 16 70 chr4 35363594 35363722 -166964625 + Charlie8 DNA MER1_type 155 275 -2142 190 349 0 0 chr4 35364298 35364364 -166963983 + MIR SINE MIR 75 140 -122 724 304 46 13 chr4 35364383 35364620 -166963727 + MIR SINE MIR 18 262 0 22 70 0 0 chr4 35364787 35364830 -166963517 + AT_rich Low_complexity Low_complexity 1 43 0 2012 227 73 0 chr4 35366709 35367149 -166961198 + MER70A LTR ERVL 1 472 0 1812 140 104 26 chr4 35367218 35367604 -166960743 - MSTA LTR MaLR -12 416 1 430 329 38 46 chr4 35367658 35367898 -166960449 - L2 LINE L2 -80 3233 2996 928 314 15 0 chr4 35367911 35368172 -166960175 + MLT1E LTR MaLR 329 593 0 821 254 99 78 chr4 35368180 35368704 -166959643 + MLT1E-int LTR MaLR 126 660 -711 2288 97 0 22 chr4 35369075 35369386 -166958961 - AluY SINE Alu -7 304 1 356 270 83 117 chr4 35369440 35369825 -166958522 + MLT1E-int LTR MaLR 966 1337 -34 947 149 12 7 chr4 35371760 35371948 -166956399 - L1MB1 LINE L1 -1 6167 5986 305 291 0 12 chr4 35371974 35372060 -166956287 - MLT1E1 LTR MaLR -514 140 56 23 0 0 0 chr4 35372165 35372188 -166956159 + AT_rich Low_complexity Low_complexity 1 23 0 202 222 16 32 chr4 35372280 35372343 -166956004 - MIR SINE MIR -101 161 100 22 0 0 0 chr4 35372522 35372544 -166955803 + AT_rich Low_complexity Low_complexity 1 22 0 192 77 0 0 chr4 35372896 35372922 -166955425 + (T)n Simple_repeat Simple_repeat 1 26 0 24 32 0 0 chr4 35373475 35373506 -166954841 + AT_rich Low_complexity Low_complexity 1 31 0 208 179 26 0 chr4 35373525 35373564 -166954783 + GA-rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr4 35373789 35373810 -166954537 + AT_rich Low_complexity Low_complexity 1 21 0 270 355 21 0 chr4 35375942 35376035 -166952312 - MIR3 SINE MIR -9 199 105 279 0 0 0 chr4 35376909 35376940 -166951407 + (TG)n Simple_repeat Simple_repeat 1 31 0 240 331 92 7 chr4 35377565 35377707 -166950640 + MIR SINE MIR 59 212 -50 306 360 100 7 chr4 35377982 35378200 -166950147 - L2 LINE L2 -324 2989 2757 445 31 16 16 chr4 35380072 35380136 -166948211 + (TG)n Simple_repeat Simple_repeat 2 65 0 304 349 70 0 chr4 35380828 35381000 -166947347 + MIR SINE MIR 66 249 -13 30 0 0 0 chr4 35381064 35381094 -166947253 + AT_rich Low_complexity Low_complexity 1 30 0 479 304 46 83 chr4 35383989 35384265 -166944082 - MIR SINE MIR 0 262 5 551 298 11 32 chr4 35386444 35386632 -166941715 - MIR SINE MIR -2 260 77 182 313 134 0 chr4 35387375 35387442 -166940905 - L2 LINE L2 -17 3255 3180 284 250 351 36 chr4 35387560 35387868 -166940479 + L2 LINE L2 2047 2451 -863 437 333 68 14 chr4 35387948 35388167 -166940180 - MIR SINE MIR -30 232 2 2239 92 7 0 chr4 35388309 35388615 -166939732 + AluY SINE Alu 1 308 -3 21 71 0 0 chr4 35389495 35389537 -166938810 + AT_rich Low_complexity Low_complexity 1 42 0 1428 249 44 42 chr4 35390613 35391116 -166937231 + MLT1D LTR MaLR 2 505 0 230 140 0 40 chr4 35393535 35393585 -166934762 + (TAAA)n Simple_repeat Simple_repeat 1 48 0 368 200 11 0 chr4 35393821 35393916 -166934431 + (TA)n Simple_repeat Simple_repeat 2 97 0 21 0 0 0 chr4 35394540 35394561 -166933786 + AT_rich Low_complexity Low_complexity 1 21 0 227 338 115 29 chr4 35394653 35394792 -166933555 - MIR SINE MIR -66 196 46 1986 138 0 0 chr4 35396311 35396587 -166931760 - AluSx SINE Alu -36 276 1 25 0 0 0 chr4 35398568 35398593 -166929754 + AT_rich Low_complexity Low_complexity 1 25 0 758 84 15 15 chr4 35399730 35399861 -166928486 + (TTTC)n Simple_repeat Simple_repeat 2 132 0 183 80 0 0 chr4 35399939 35399964 -166928383 + (TTCC)n Simple_repeat Simple_repeat 4 28 0 272 208 0 14 chr4 35400219 35400291 -166928056 + T-rich Low_complexity Low_complexity 4 74 0 781 154 28 17 chr4 35400307 35400749 -166927598 + CT-rich Low_complexity Low_complexity 1 446 0 851 214 26 74 chr4 35400864 35401249 -166927098 - MER67D LTR ERV1 -32 435 24 234 0 0 0 chr4 35401855 35401881 -166926466 + (CA)n Simple_repeat Simple_repeat 2 27 0 204 40 0 0 chr4 35401881 35401906 -166926441 + (CCA)n Simple_repeat Simple_repeat 2 26 0 582 329 64 78 chr4 35402486 35402985 -166925362 - L2 LINE L2 -18 3295 2804 32 57 0 0 chr4 35404226 35404279 -166924068 + AT_rich Low_complexity Low_complexity 1 53 0 2171 103 3 0 chr4 35404311 35404612 -166923735 - AluSg SINE Alu -8 302 1 227 349 119 27 chr4 35404791 35405052 -166923295 + L2 LINE L2 1548 1832 -1482 304 352 136 37 chr4 35405057 35405654 -166922693 + L2 LINE L2 1957 2612 -702 1335 112 5 47 chr4 35405692 35405906 -166922441 - AluSg/x SINE Alu -17 295 91 496 332 85 12 chr4 35405911 35406170 -166922177 + L2 LINE L2 2697 2974 -340 1989 125 34 0 chr4 35406971 35407268 -166921079 - AluSg SINE Alu -3 307 1 218 31 0 31 chr4 35407537 35407569 -166920778 + (CA)n Simple_repeat Simple_repeat 1 31 0 229 292 15 0 chr4 35407584 35407649 -166920698 + (CATA)n Simple_repeat Simple_repeat 2 67 0 313 283 43 36 chr4 35407695 35407833 -166920514 + MLT1K LTR MaLR 322 460 -128 303 291 107 0 chr4 35408088 35408191 -166920156 - MIR SINE MIR -81 181 68 21 0 0 0 chr4 35409094 35409115 -166919232 + AT_rich Low_complexity Low_complexity 1 21 0 5246 237 15 14 chr4 35409211 35410655 -166917692 - L1PA16 LINE L1 -1683 4463 3019 4921 188 25 26 chr4 35410639 35412362 -166915985 + L1PA16 LINE L1 4445 6157 -9 * 454 294 24 18 chr4 35412469 35412639 -166915708 + MIR SINE MIR 88 258 -4 406 363 77 16 chr4 35413045 35413227 -166915120 + MLT1I LTR MaLR 147 339 -70 188 372 31 31 chr4 35413778 35413969 -166914378 - L2 LINE L2 -1360 1954 1764 260 309 151 15 chr4 35414388 35414653 -166913694 + L1ME LINE L1 5577 5877 -244 249 152 45 15 chr4 35414717 35414783 -166913564 + (TA)n Simple_repeat Simple_repeat 2 69 0 1114 213 4 0 chr4 35415012 35415237 -166913110 + AluJo SINE Alu 86 311 -1 2131 188 49 7 chr4 35415351 35415760 -166912587 - MSTB LTR MaLR 0 426 1 7785 194 72 10 chr4 35415760 35416131 -166912216 - MSTB-int LTR MaLR 0 1651 1304 2557 121 3 0 chr4 35416131 35416494 -166911853 + THE1B LTR MaLR 1 364 0 7785 194 72 10 chr4 35416494 35417675 -166910672 - MSTB-int LTR MaLR -347 1304 4 2191 182 31 14 chr4 35417682 35418099 -166910248 - MSTB LTR MaLR -2 424 1 312 232 12 24 chr4 35418126 35418208 -166910139 - MER5A DNA MER1_type -100 89 9 1116 266 92 24 chr4 35418649 35419063 -166909284 + MER69 DNA AcHobo 1 442 -2084 343 244 123 68 chr4 35419105 35419592 -166908755 + MER69 DNA AcHobo 2010 2523 -3 253 287 213 0 chr4 35419599 35419735 -166908612 + MIR SINE MIR 98 262 0 596 119 44 0 chr4 35419965 35420124 -166908223 + (TA)n Simple_repeat Simple_repeat 2 167 0 25 31 0 0 chr4 35420393 35420425 -166907922 + AT_rich Low_complexity Low_complexity 1 32 0 999 258 121 8 chr4 35420836 35421192 -166907155 - MSTB LTR MaLR 0 396 1 1232 197 42 72 chr4 35421701 35422062 -166906285 - MLT1A1 LTR MaLR 0 365 16 296 301 20 96 chr4 35422099 35422245 -166906102 + MER5A DNA MER1_type 27 161 -28 231 254 0 16 chr4 35422568 35422631 -166905716 + (TA)n Simple_repeat Simple_repeat 2 63 0 27 49 0 0 chr4 35423210 35423251 -166905096 + AT_rich Low_complexity Low_complexity 1 41 0 181 384 129 23 chr4 35424126 35424877 -166903470 + L2 LINE L2 1986 2816 -498 193 300 0 0 chr4 35425142 35425192 -166903155 + L2 LINE L2 3138 3187 -85 244 261 0 22 chr4 35425237 35425329 -166903018 + L1MC4 LINE L1 6614 6703 -1339 23 33 0 0 chr4 35425341 35425371 -166902976 + AT_rich Low_complexity Low_complexity 1 30 0 27 29 0 0 chr4 35425804 35425838 -166902509 + AT_rich Low_complexity Low_complexity 1 34 0 205 400 61 0 chr4 35425871 35425986 -166902361 - MIR SINE MIR -62 146 25 1964 119 7 0 chr4 35426033 35426311 -166902036 - AluSg1 SINE Alu -29 280 1 1549 93 0 0 chr4 35426529 35426745 -166901602 - L1PB1 LINE L1 0 6151 5936 796 262 14 5 chr4 35427039 35427253 -166901094 + MER20 DNA MER1_type 1 216 -3 513 269 46 101 chr4 35427442 35427769 -166900578 - MLT1I LTR MaLR 0 409 101 246 307 44 35 chr4 35428751 35428865 -166899482 + MIR SINE MIR 18 132 -76 1910 34 0 0 chr4 35428865 35429099 -166899248 - L1PA5 LINE L1 0 6154 5921 22 56 0 0 chr4 35429184 35429220 -166899127 + AT_rich Low_complexity Low_complexity 1 36 0 77 71 0 0 chr4 35429345 35429499 -166898848 + AT_rich Low_complexity Low_complexity 1 154 0 22 80 0 0 chr4 35429558 35429608 -166898739 + AT_rich Low_complexity Low_complexity 1 50 0 14169 182 30 12 chr4 35429924 35430641 -166897706 + L1MA1 LINE L1 3130 3832 -3889 223 28 56 0 chr4 35430641 35430677 -166897670 + (TA)n Simple_repeat Simple_repeat 2 39 0 14169 182 30 12 chr4 35430677 35430811 -166897536 + L1MA1 LINE L1 3832 3962 -3759 201 39 0 0 chr4 35430811 35430837 -166897510 + (CAA)n Simple_repeat Simple_repeat 1 26 0 14169 182 30 12 chr4 35430837 35434061 -166894286 + L1MA1 LINE L1 3962 7290 -431 1181 314 127 28 chr4 35434061 35434716 -166893631 - L2 LINE L2 -618 2696 1977 314 224 51 51 chr4 35435699 35435797 -166892550 - L2 LINE L2 -8 3305 3208 31 68 0 0 chr4 35436037 35436096 -166892251 + AT_rich Low_complexity Low_complexity 1 59 0 404 325 138 0 chr4 35436100 35436303 -166892044 - MIR SINE MIR -2 260 30 273 317 12 0 chr4 35436775 35436857 -166891490 - MER5A DNA MER1_type -83 106 24 959 153 21 98 chr4 35436865 35437101 -166891246 + MER20 DNA MER1_type 2 219 0 835 204 0 0 chr4 35437945 35438097 -166890250 + L1PB4 LINE L1 6005 6156 0 1161 41 35 0 chr4 35439177 35439349 -166888998 + (TTC)n Simple_repeat Simple_repeat 3 180 0 476 158 11 0 chr4 35439349 35439444 -166888903 + CT-rich Low_complexity Low_complexity 3 98 0 201 94 0 0 chr4 35440073 35440105 -166888242 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 22 56 0 0 chr4 35440441 35440477 -166887870 + AT_rich Low_complexity Low_complexity 1 36 0 291 118 29 15 chr4 35440485 35440553 -166887794 + (TA)n Simple_repeat Simple_repeat 2 70 0 191 36 36 0 chr4 35442140 35442168 -166886179 + (CAA)n Simple_repeat Simple_repeat 2 30 0 272 391 28 28 chr4 35442587 35442766 -166885581 + MIR SINE MIR 20 198 -64 198 0 0 0 chr4 35443505 35443527 -166884820 + (T)n Simple_repeat Simple_repeat 1 22 0 1838 86 0 0 chr4 35443542 35443775 -166884572 - AluSc SINE Alu -76 233 1 566 147 37 0 chr4 35443868 35443977 -166884370 + L1MB3 LINE L1 6067 6179 -4 28 29 0 0 chr4 35443977 35444012 -166884335 + AT_rich Low_complexity Low_complexity 1 35 0 936 261 49 23 chr4 35444185 35444615 -166883732 + L1MD1 LINE L1 2736 3176 -2970 1058 208 5 0 chr4 35444815 35445022 -166883325 - MER2 DNA MER2_type -136 209 2 2715 237 70 47 chr4 35445022 35445321 -166883026 + L1MD1 LINE L1 3175 3466 -2680 244 0 56 0 chr4 35445321 35445357 -166882990 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 2715 237 70 47 chr4 35445357 35445412 -166882935 + L1MD1 LINE L1 3466 3518 -2628 1649 189 4 0 chr4 35445412 35445693 -166882654 - AluSx SINE Alu -30 282 1 2715 237 70 47 chr4 35445693 35446456 -166881891 + L1MD1 LINE L1 3518 4319 -1827 2618 202 15 67 chr4 35446497 35447210 -166881137 + L1MD1 LINE L1 5567 6242 0 25 0 0 0 chr4 35447224 35447249 -166881098 + AT_rich Low_complexity Low_complexity 1 25 0 267 31 0 0 chr4 35447313 35447345 -166881002 + (TG)n Simple_repeat Simple_repeat 2 33 0 1166 276 27 39 chr4 35447383 35447703 -166880644 + L1ME3A LINE L1 5592 5905 -265 2210 108 10 0 chr4 35447703 35448009 -166880338 + AluSg SINE Alu 1 309 -1 1166 276 27 39 chr4 35448009 35448202 -166880145 + L1ME3A LINE L1 5905 6099 -71 203 359 0 26 chr4 35448770 35448887 -166879460 - L3 LINE CR1 -869 708 595 477 345 26 22 chr4 35449678 35449910 -166878437 - MIR SINE MIR -10 252 20 1359 210 34 91 chr4 35450136 35450631 -166877716 - MLT1C LTR MaLR 0 467 1 482 377 8 23 chr4 35450779 35451036 -166877311 - MIR SINE MIR -2 260 8 21 71 0 0 chr4 35451582 35451624 -166876723 + AT_rich Low_complexity Low_complexity 1 42 0 1927 109 28 65 chr4 35451974 35452296 -166876051 + AluSx SINE Alu 1 310 -2 2540 191 29 16 chr4 35452423 35452973 -166875374 - MER89 LTR ERV1 -2 557 1 25 0 0 0 chr4 35453982 35454007 -166874340 + AT_rich Low_complexity Low_complexity 1 25 0 722 247 12 0 chr4 35454012 35454178 -166874169 - FRAM SINE Alu -8 168 1 633 194 8 61 chr4 35454648 35454842 -166873505 - L1MD1 LINE L1 -341 5823 5672 235 225 72 16 chr4 35454894 35454989 -166873358 - L1MCa LINE L1 -4257 2219 2094 1214 266 98 35 chr4 35455056 35455891 -166872456 - L1MCa LINE L1 -4503 1923 934 209 57 29 0 chr4 35455892 35455927 -166872420 + (TTTTA)n Simple_repeat Simple_repeat 2 37 0 2569 87 5 89 chr4 35455934 35456381 -166871966 - L1PB1 LINE L1 0 6151 5743 195 162 0 0 chr4 35456409 35456446 -166871901 + (CA)n Simple_repeat Simple_repeat 2 38 0 200 250 0 0 chr4 35456461 35456501 -166871846 + (TA)n Simple_repeat Simple_repeat 2 41 0 247 172 94 0 chr4 35456504 35456568 -166871779 - L1MC4 LINE L1 -1339 6703 6634 * 10125 217 125 5 chr4 35456541 35457890 -166870457 - L1P5 LINE L1 -360 6586 5400 185 0 40 0 chr4 35457890 35457915 -166870432 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 10125 217 125 5 chr4 35457915 35460281 -166868066 - L1P5 LINE L1 -1546 5400 1377 247 278 31 41 chr4 35460878 35460975 -166867372 - MIR SINE MIR -40 222 127 387 258 129 8 chr4 35462304 35462428 -166865919 + MLT1E1 LTR MaLR 1 139 -515 633 201 67 12 chr4 35462448 35462682 -166865665 + MLT1A1 LTR MaLR 28 365 0 1467 270 88 24 chr4 35462693 35463160 -166865187 + MLT1E2 LTR MaLR 74 570 -56 589 217 0 9 chr4 35463166 35463324 -166865023 + FLAM_C SINE Alu 4 160 0 281 197 16 0 chr4 35463324 35463385 -166864962 + MLT1E2 LTR MaLR 563 624 0 25 0 0 0 chr4 35463474 35463499 -166864848 + AT_rich Low_complexity Low_complexity 1 25 0 337 262 0 12 chr4 35463972 35464056 -166864291 + MLT1I LTR MaLR 323 405 -4 410 282 87 67 chr4 35464076 35464271 -166864076 + L2 LINE L2 2392 2590 -724 4595 202 54 89 chr4 35464285 35466182 -166862165 - MER52A LTR ERV1 -1 1754 1 1023 305 55 14 chr4 35466445 35466884 -166861463 + L1MC4a LINE L1 6503 6959 -849 1126 289 136 35 chr4 35467754 35468324 -166860023 + L2 LINE L2 1617 2267 -1047 1469 173 92 8 chr4 35468324 35468614 -166859733 - AluSx SINE Alu 0 312 1 1126 289 136 35 chr4 35468614 35468709 -166859638 + L2 LINE L2 2267 2351 -963 880 307 61 26 chr4 35468735 35469113 -166859234 + MLT1I LTR MaLR 17 407 -2 783 290 196 27 chr4 35469164 35469643 -166858704 + L2 LINE L2 2417 2976 -338 269 275 25 42 chr4 35469728 35469848 -166858499 + L2 LINE L2 3101 3218 -95 267 351 26 0 chr4 35469929 35470080 -166858267 + MER117 DNA MER1_type 4 158 -39 210 297 0 0 chr4 35470306 35470370 -166857977 + CT-rich Low_complexity Low_complexity 4 67 0 198 170 170 0 chr4 35470636 35470683 -166857664 + L2 LINE L2 3215 3269 -3 30 45 0 0 chr4 35471045 35471089 -166857258 + AT_rich Low_complexity Low_complexity 1 44 0 481 296 70 14 chr4 35472362 35472649 -166855698 - L1ME4a LINE L1 -274 5847 5545 21 57 0 0 chr4 35473367 35473402 -166854945 + AT_rich Low_complexity Low_complexity 1 35 0 1730 161 44 19 chr4 35473490 35473856 -166854491 - THE1C LTR MaLR 0 375 1 323 256 26 0 chr4 35473883 35473961 -166854386 + MIR SINE MIR 4 83 -179 379 271 57 29 chr4 35474137 35474277 -166854070 - L2 LINE L2 -8 3305 3162 1378 234 130 38 chr4 35474314 35474533 -166853814 - MLT2B1 LTR ERVL -8 512 314 213 39 0 0 chr4 35474533 35474559 -166853788 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1378 234 130 38 chr4 35474559 35474808 -166853539 - MLT2B1 LTR ERVL -206 314 1 1028 301 53 21 chr4 35474811 35475355 -166852992 - L2 LINE L2 -129 3184 2621 2168 147 31 6 chr4 35475361 35475716 -166852631 + THE1B LTR MaLR 1 364 0 9807 124 27 36 chr4 35475716 35477311 -166851036 + THE1B-int LTR MaLR 1 1580 0 1980 144 55 23 chr4 35477316 35477664 -166850683 + THE1B LTR MaLR 6 364 0 731 287 108 26 chr4 35477664 35478005 -166850342 - L2 LINE L2 -702 2612 2244 258 278 9 28 chr4 35478035 35478143 -166850204 + L1MCc LINE L1 24 129 -6294 219 146 0 0 chr4 35478655 35478696 -166849651 + (GA)n Simple_repeat Simple_repeat 2 42 0 717 311 27 14 chr4 35478774 35479067 -166849280 + L1MCc LINE L1 1132 1428 -4995 996 260 115 44 chr4 35479094 35479252 -166849095 + MLT1E LTR MaLR 26 171 -421 321 26 0 0 chr4 35479252 35479290 -166849057 + (TC)n Simple_repeat Simple_repeat 1 38 0 996 260 115 44 chr4 35479290 35479628 -166848719 + MLT1E LTR MaLR 171 582 -10 393 22 0 0 chr4 35480002 35480048 -166848299 + (TG)n Simple_repeat Simple_repeat 2 47 0 369 43 0 0 chr4 35480782 35480829 -166847518 + (TG)n Simple_repeat Simple_repeat 2 48 0 225 0 0 0 chr4 35481433 35481458 -166846889 + (TA)n Simple_repeat Simple_repeat 1 25 0 1353 238 75 19 chr4 35482864 35483238 -166845109 - MSTD LTR MaLR -1 395 1 1647 187 11 0 chr4 35483448 35483753 -166844594 + AluJb SINE Alu 1 308 0 2269 121 25 25 chr4 35483927 35484282 -166844065 + THE1A LTR MaLR 1 355 0 1667 83 4 13 chr4 35484305 35484533 -166843814 + THE1A-int LTR MaLR 1355 1580 0 2359 89 43 26 chr4 35484533 35484882 -166843465 + THE1A LTR MaLR 1 355 0 5583 156 23 7 chr4 35485467 35486875 -166841472 + L1PB1 LINE L1 4717 6148 -3 24 0 0 0 chr4 35486875 35486899 -166841448 + AT_rich Low_complexity Low_complexity 1 24 0 2599 173 34 97 chr4 35486948 35487783 -166840564 + MER31-int LTR ERV1 4167 4948 -3172 301 380 27 14 chr4 35487792 35488084 -166840263 + MER31-int LTR ERV1 2254 2549 -2098 1766 170 34 3 chr4 35488987 35489281 -166839066 + AluSx SINE Alu 3 305 -7 382 185 22 43 chr4 35489288 35489380 -166838967 + LTR23 LTR ERV1 1 90 -347 906 159 18 6 chr4 35489518 35489681 -166838666 + MER41E LTR ERV1 271 435 -77 1000 259 120 43 chr4 35490011 35490609 -166837738 + LTR48B LTR ERV1 1 644 0 2165 148 89 5 chr4 35490807 35491200 -166837147 + MSTA LTR MaLR 1 426 -2 531 250 27 22 chr4 35491276 35491460 -166836887 + MER31-int LTR ERV1 4058 4242 -694 1093 226 75 24 chr4 35491470 35491846 -166836501 + LTR37A LTR ERV1 5 399 -27 22 56 0 0 chr4 35492169 35492205 -166836142 + AT_rich Low_complexity Low_complexity 1 36 0 1286 255 114 10 chr4 35492578 35493028 -166835319 - MER110A LTR ERV1 0 468 1 198 0 0 0 chr4 35493630 35493652 -166834695 + (TG)n Simple_repeat Simple_repeat 1 22 0 289 282 32 90 chr4 35493674 35493862 -166834485 + MER92C LTR ERV1 5 181 -373 208 364 174 5 chr4 35494263 35494447 -166833900 + MIR SINE MIR 20 234 -28 3882 152 6 65 chr4 35494571 35495297 -166833050 + LTR8 LTR ERV1 1 683 -8 21 0 0 0 chr4 35496123 35496144 -166832203 + AT_rich Low_complexity Low_complexity 1 21 0 1930 154 82 55 chr4 35496331 35496747 -166831600 + LTR49 LTR ERV1 1 427 -168 774 130 0 46 chr4 35496767 35496898 -166831449 - AluSg/x SINE Alu -14 298 174 245 246 44 26 chr4 35496898 35497012 -166831335 + LTR48 LTR ERV1 622 737 -50 564 201 0 81 chr4 35497471 35497531 -166830816 - LTR24C LTR ERV1 -14 621 558 1757 150 55 41 chr4 35497531 35497897 -166830450 - THE1C LTR MaLR 0 375 5 564 201 0 81 chr4 35497897 35497985 -166830362 - LTR24C LTR ERV1 -77 558 485 1583 75 25 0 chr4 35498202 35498402 -166829945 + AluY SINE Alu 96 300 -11 21 0 0 0 chr4 35498523 35498544 -166829803 + AT_rich Low_complexity Low_complexity 1 21 0 333 333 67 62 chr4 35499101 35499635 -166828712 - LTR24C-int LTR ERV1 -2094 2553 2017 3323 151 19 0 chr4 35500256 35500773 -166827574 - MER1A DNA MER1_type 0 527 1 1008 173 156 72 chr4 35501288 35501634 -166826713 + THE1C LTR MaLR 1 375 0 261 391 78 6 chr4 35501695 35501874 -166826473 - LTR24C-int LTR ERV1 -4064 2737 2546 1318 20 0 0 chr4 35502025 35502176 -166826171 - AluYa5 SINE Alu -3 308 158 4711 153 10 9 chr4 35502372 35503189 -166825158 - L1PA16 LINE L1 -9 6157 5340 213 276 0 46 chr4 35504701 35504788 -166823559 + GA-rich Low_complexity Low_complexity 3 85 0 1887 129 39 0 chr4 35505343 35505623 -166822724 + AluSc SINE Alu 1 291 -18 433 285 50 62 chr4 35505839 35506347 -166822000 - LTR24C-int LTR ERV1 -4473 650 15 2346 169 142 12 chr4 35506361 35506919 -166821428 - LTR24C LTR ERV1 0 635 6 2556 57 0 0 chr4 35506959 35507260 -166821087 + AluY SINE Alu 1 301 -10 21 0 0 0 chr4 35507371 35507392 -166820955 + AT_rich Low_complexity Low_complexity 1 21 0 738 296 144 39 chr4 35507488 35508757 -166819590 - HAL1 LINE L1 -262 2245 844 25 0 0 0 chr4 35509276 35509301 -166819046 + AT_rich Low_complexity Low_complexity 1 25 0 180 0 0 0 chr4 35509451 35509471 -166818876 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 939 308 64 21 chr4 35509475 35509703 -166818644 + MLT1D LTR MaLR 1 218 -287 2008 143 162 5 chr4 35509703 35510073 -166818274 + MSTA LTR MaLR 1 428 0 939 308 64 21 chr4 35510073 35510328 -166818019 + MLT1D LTR MaLR 218 505 0 1477 263 117 49 chr4 35510665 35511274 -166817073 + MLT1E1 LTR MaLR 1 650 -4 1502 97 5 14 chr4 35511325 35511532 -166816815 - AluSg/x SINE Alu -12 300 96 2533 209 13 0 chr4 35511693 35512157 -166816190 + MER70A LTR ERVL 3 472 0 2218 117 0 0 chr4 35512460 35512767 -166815580 + AluSx SINE Alu 1 307 -5 198 0 0 0 chr4 35512802 35512824 -166815523 + (TTTTA)n Simple_repeat Simple_repeat 1 22 0 1619 190 93 3 chr4 35512825 35513178 -166815169 - L1PB4 LINE L1 -17 6139 5755 296 246 0 36 chr4 35513586 35513696 -166814651 + A-rich Low_complexity Low_complexity 4 109 0 1608 199 10 7 chr4 35514056 35514358 -166813989 + AluJo SINE Alu 1 303 -9 1889 92 17 0 chr4 35514455 35514747 -166813600 - L1P3 LINE L1 -2904 3557 3261 13435 153 13 31 chr4 35515505 35518689 -166809658 - L1P3 LINE L1 -3204 3257 8 496 273 66 37 chr4 35519061 35519548 -166808799 - L1MC5 LINE L1 -193 7768 7268 1906 153 32 42 chr4 35519593 35519972 -166808375 + THE1C LTR MaLR 1 375 0 384 302 14 14 chr4 35520171 35520310 -166808037 - L1MC5 LINE L1 -1209 6752 6614 21 0 0 0 chr4 35520317 35520338 -166808009 + AT_rich Low_complexity Low_complexity 1 21 0 2298 196 7 5 chr4 35520526 35520959 -166807388 + Tigger2a DNA MER2_type 1 434 0 21 71 0 0 chr4 35520970 35521012 -166807335 + AT_rich Low_complexity Low_complexity 1 42 0 1648 178 49 35 chr4 35521589 35521959 -166806388 - THE1C LTR MaLR 0 375 1 8273 163 29 30 chr4 35521959 35523538 -166804809 - THE1C-int LTR MaLR 0 1580 4 1474 205 24 39 chr4 35523541 35523922 -166804425 - THE1C LTR MaLR 0 375 1 30 59 0 0 chr4 35524420 35524471 -166803876 + AT_rich Low_complexity Low_complexity 1 51 0 221 233 0 0 chr4 35525655 35525698 -166802649 + GA-rich Low_complexity Low_complexity 3 45 0 25 51 0 0 chr4 35525887 35525926 -166802421 + AT_rich Low_complexity Low_complexity 1 39 0 24 32 0 0 chr4 35526094 35526125 -166802222 + AT_rich Low_complexity Low_complexity 1 31 0 306 0 0 0 chr4 35526583 35526617 -166801730 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 2179 155 55 2 chr4 35526619 35527038 -166801309 - LTR19A LTR ERV1 -45 441 1 28773 73 28 37 chr4 35527038 35527795 -166800552 - LTR19A-int LTR ERV1 0 5586 4823 2223 71 7 16 chr4 35527795 35528104 -166800243 + AluY SINE Alu 1 306 -5 28773 73 28 37 chr4 35528104 35530563 -166797784 - LTR19A-int LTR ERV1 -763 4823 2416 2188 92 0 0 chr4 35530563 35530857 -166797490 - AluY SINE Alu -4 307 14 28773 73 28 37 chr4 35530857 35531829 -166796518 - LTR19A-int LTR ERV1 -3170 2416 1436 5045 126 47 28 chr4 35531823 35532773 -166795574 - LTR19A-int LTR ERV1 -4458 1128 278 * 990 118 0 20 chr4 35532784 35532936 -166795411 - LTR19A-int LTR ERV1 -5437 149 1 551 156 28 0 chr4 35532937 35533046 -166795301 - LTR19A LTR ERV1 -1 485 374 408 306 109 50 chr4 35534085 35534682 -166793665 + L1MC2 LINE L1 4199 4830 -1316 219 362 40 13 chr4 35534811 35534960 -166793387 + L2 LINE L2 2283 2435 -879 1671 39 0 0 chr4 35535456 35535662 -166792685 - L1PA4 LINE L1 -2 6153 5948 267 0 0 0 chr4 35535662 35535694 -166792653 + L1PA4 LINE L1 5930 5961 -211 531 386 67 18 chr4 35536775 35537210 -166791137 + L2 LINE L2 332 787 -2527 2226 96 7 3 chr4 35537269 35537572 -166790775 - AluY SINE Alu -7 304 1 786 272 61 3 chr4 35537655 35538030 -166790317 - L1M4 LINE L1 -1621 4525 4129 508 351 57 17 chr4 35538043 35538339 -166790008 + L2 LINE L2 2642 2949 -365 371 282 64 0 chr4 35538687 35538797 -166789550 + L2 LINE L2 3191 3307 -6 25 75 0 0 chr4 35538913 35538966 -166789381 + AT_rich Low_complexity Low_complexity 1 53 0 202 291 0 0 chr4 35540397 35540452 -166787895 + A-rich Low_complexity Low_complexity 4 58 0 1197 296 128 28 chr4 35540909 35541480 -166786867 - L2 LINE L2 -756 2558 1931 2207 169 21 30 chr4 35542605 35543037 -166785310 + MSTA LTR MaLR 1 428 0 1956 159 0 6 chr4 35543729 35544043 -166784304 - AluSx SINE Alu 0 312 1 2635 191 162 21 chr4 35544125 35545014 -166783333 + L1MC2 LINE L1 5276 6336 -8 1945 118 0 11 chr4 35545288 35545568 -166782779 - AluSq SINE Alu -36 277 1 31 26 0 0 chr4 35546022 35546060 -166782287 + AT_rich Low_complexity Low_complexity 1 38 0 25 51 0 0 chr4 35546887 35546926 -166781421 + AT_rich Low_complexity Low_complexity 1 39 0 22 35 0 0 chr4 35547020 35547049 -166781298 + AT_rich Low_complexity Low_complexity 1 29 0 1833 167 140 16 chr4 35547870 35548248 -166780099 - MSTA LTR MaLR -3 425 1 1179 271 47 0 chr4 35548714 35549035 -166779312 - MER58B DNA MER1_type 0 341 6 1289 202 38 59 chr4 35550021 35550393 -166777954 + MLT1A1 LTR MaLR 2 365 0 2135 128 18 39 chr4 35551055 35551438 -166776909 - THE1C LTR MaLR 0 375 1 21 36 0 0 chr4 35551925 35551953 -166776394 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr4 35552838 35552860 -166775487 + AT_rich Low_complexity Low_complexity 1 22 0 34 24 0 0 chr4 35552910 35552951 -166775396 + AT_rich Low_complexity Low_complexity 1 41 0 252 0 0 0 chr4 35552991 35553019 -166775328 + (CA)n Simple_repeat Simple_repeat 2 29 0 564 298 139 5 chr4 35553492 35553700 -166774647 - MIR SINE MIR -3 259 24 1980 136 0 0 chr4 35554229 35554515 -166773832 + AluSx SINE Alu 1 286 -26 252 100 0 0 chr4 35554515 35554555 -166773792 + (TA)n Simple_repeat Simple_repeat 2 41 0 2588 33 0 3 chr4 35555497 35555802 -166772545 + AluY SINE Alu 2 305 -6 21 36 0 0 chr4 35556861 35556889 -166771458 + AT_rich Low_complexity Low_complexity 1 28 0 204 318 71 80 chr4 35556940 35557179 -166771168 + MIR SINE MIR 15 251 -11 236 194 65 32 chr4 35557340 35557402 -166770945 - L1MC/D LINE L1 -587 5841 5778 1018 224 109 37 chr4 35558500 35558822 -166769525 - MER2 DNA MER2_type 0 345 1 195 306 81 48 chr4 35558831 35558955 -166769392 - MIR SINE MIR -112 150 23 1730 204 29 8 chr4 35559361 35559743 -166768604 - MLT1B LTR MaLR 0 390 1 249 163 0 0 chr4 35559874 35559923 -166768424 + (CA)n Simple_repeat Simple_repeat 2 50 0 21 57 0 0 chr4 35560853 35560888 -166767459 + AT_rich Low_complexity Low_complexity 1 35 0 315 294 37 0 chr4 35561492 35561601 -166766746 + MER5B DNA MER1_type 63 175 -3 266 307 63 16 chr4 35562221 35562348 -166765999 - L1MC4 LINE L1 -156 7886 7754 1251 212 36 33 chr4 35562348 35562655 -166765692 - MLT1A2 LTR MaLR 0 374 67 406 277 87 74 chr4 35562663 35563053 -166765294 - L1MC4 LINE L1 -939 7103 6709 180 0 0 0 chr4 35563055 35563075 -166765272 + (TG)n Simple_repeat Simple_repeat 2 21 0 270 289 0 0 chr4 35563086 35563162 -166765185 - L1MC4 LINE L1 -1473 6569 6494 435 254 15 9 chr4 35564191 35564357 -166763990 - L1MC/D LINE L1 -816 5417 5249 403 204 43 11 chr4 35564490 35564583 -166763764 - MLT1D LTR MaLR 0 390 295 632 252 21 58 chr4 35564623 35564865 -166763482 - MLT1D LTR MaLR -266 239 7 9462 48 2 0 chr4 35564963 35566175 -166762172 - L1P LINE L1 -2681 3465 2252 7224 50 2 0 chr4 35566175 35567131 -166761216 + L1PA5 LINE L1 5197 6154 0 377 202 83 0 chr4 35567207 35567316 -166761031 + L1ME LINE L1 5380 5497 -669 823 264 35 13 chr4 35567384 35567695 -166760652 - L1MC/D LINE L1 -1067 5148 4831 1169 217 65 12 chr4 35567924 35568261 -166760086 - L1MA7 LINE L1 0 6291 5937 1730 252 147 50 chr4 35568310 35569797 -166758550 - L1MC/D LINE L1 -1576 4639 3009 234 308 55 64 chr4 35569840 35570480 -166757867 - L1MC/D LINE L1 -3393 2822 2189 447 286 73 17 chr4 35570494 35570795 -166757552 - L1MC/D LINE L1 -4220 2176 1859 257 279 76 68 chr4 35570944 35571353 -166756994 - L1MEc LINE L1 -5018 1187 807 216 0 0 0 chr4 35571417 35571441 -166756906 + (TA)n Simple_repeat Simple_repeat 2 25 0 1567 125 94 4 chr4 35571614 35571870 -166756477 - AluSx SINE Alu -8 304 26 24 53 0 0 chr4 35572307 35572345 -166756002 + AT_rich Low_complexity Low_complexity 1 38 0 2135 95 0 29 chr4 35572603 35572919 -166755428 + AluY SINE Alu 1 307 -4 21 57 0 0 chr4 35573448 35573483 -166754864 + AT_rich Low_complexity Low_complexity 1 35 0 201 133 0 0 chr4 35574336 35574366 -166753981 + (TG)n Simple_repeat Simple_repeat 1 30 0 190 222 0 0 chr4 35574765 35574801 -166753546 + MIR SINE MIR 70 105 -157 306 73 0 0 chr4 35574874 35574915 -166753432 + (CA)n Simple_repeat Simple_repeat 2 42 0 1289 248 72 62 chr4 35574924 35575407 -166752940 + MLT1D LTR MaLR 6 493 -12 255 130 0 37 chr4 35575423 35575477 -166752870 - L1MC4 LINE L1 -1339 6703 6652 2259 133 12 28 chr4 35575794 35576194 -166752153 - L1PA13 LINE L1 -8 6155 5762 334 310 30 61 chr4 35576268 35576410 -166751937 - MIR SINE MIR -19 243 107 2714 187 14 36 chr4 35576410 35576972 -166751375 - MLT2B3 LTR ERVL 0 554 5 334 310 30 61 chr4 35576972 35577026 -166751321 - MIR SINE MIR -155 107 53 685 320 84 63 chr4 35577064 35577178 -166751169 - L2 LINE L2 0 3313 3203 194 0 39 0 chr4 35577178 35577204 -166751143 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 836 228 109 0 chr4 35577212 35577414 -166750933 - MER58A DNA MER1_type 0 224 1 685 320 84 63 chr4 35577414 35577975 -166750372 - L2 LINE L2 -116 3197 2628 524 215 0 9 chr4 35578186 35578293 -166750054 - FRAM SINE Alu -25 151 46 1560 179 3 58 chr4 35578308 35578638 -166749709 - AluJo SINE Alu 0 312 1 698 203 92 20 chr4 35578662 35578815 -166749532 - FRAM SINE Alu -2 164 1 2777 244 38 73 chr4 35580587 35581500 -166746847 + L1MCa LINE L1 4 862 -5183 741 202 49 30 chr4 35581489 35581736 -166746611 + L1MCa LINE L1 1675 2023 -4541 * 1295 183 58 0 chr4 35581725 35582020 -166746327 + L1MCa LINE L1 2304 2615 -3949 1784 179 61 25 chr4 35582050 35582392 -166745955 + L1MC2 LINE L1 5918 6279 -65 4586 142 52 13 chr4 35582392 35583187 -166745160 + LTR1B LTR ERV1 1 826 0 1784 179 61 25 chr4 35583187 35583251 -166745096 + L1MC2 LINE L1 6279 6339 -5 324 149 15 30 chr4 35583693 35583760 -166744587 - MSTB1 LTR MaLR -1 431 366 * 1013 177 35 35 chr4 35583750 35583982 -166744365 - MSTB1 LTR MaLR -200 232 1 22 56 0 0 chr4 35584291 35584327 -166744020 + AT_rich Low_complexity Low_complexity 1 36 0 425 305 109 0 chr4 35584723 35584897 -166743450 + MIR SINE MIR 70 262 0 23 33 0 0 chr4 35584901 35584931 -166743416 + AT_rich Low_complexity Low_complexity 1 30 0 5892 77 16 0 chr4 35585040 35585830 -166742517 + L1PA7 LINE L1 5352 6154 0 458 322 35 22 chr4 35585914 35586141 -166742206 - L3 LINE CR1 -112 1465 1236 237 308 35 133 chr4 35586144 35586430 -166741917 - L3 LINE CR1 -1017 560 303 2174 107 13 0 chr4 35586621 35586929 -166741418 - AluSp SINE Alu 0 313 2 22 35 0 0 chr4 35587628 35587657 -166740690 + AT_rich Low_complexity Low_complexity 1 29 0 221 241 35 69 chr4 35587880 35587967 -166740380 - L2 LINE L2 -1 3312 3229 234 419 23 0 chr4 35588284 35588413 -166739934 + L2 LINE L2 3103 3234 -38 219 154 26 0 chr4 35588561 35588600 -166739747 + CT-rich Low_complexity Low_complexity 2 41 0 23 54 0 0 chr4 35589240 35589277 -166739070 + AT_rich Low_complexity Low_complexity 1 37 0 338 346 35 48 chr4 35590117 35590345 -166738002 + L2 LINE L2 2685 2909 -405 1876 147 48 34 chr4 35590924 35591279 -166737068 + THE1B LTR MaLR 1 360 -4 10319 118 32 6 chr4 35591284 35592822 -166735525 + THE1B-int LTR MaLR 2 1580 0 1774 179 33 33 chr4 35592822 35593186 -166735161 + THE1B LTR MaLR 1 364 0 1071 255 292 69 chr4 35593358 35594252 -166734095 - MER52A LTR ERV1 0 1755 663 192 267 0 0 chr4 35595817 35595877 -166732470 + (TA)n Simple_repeat Simple_repeat 2 61 0 22 70 0 0 chr4 35596095 35596138 -166732209 + AT_rich Low_complexity Low_complexity 1 43 0 194 140 0 20 chr4 35596606 35596656 -166731691 + (CA)n Simple_repeat Simple_repeat 2 50 0 844 43 17 8 chr4 35596814 35596931 -166731416 + (TTTC)n Simple_repeat Simple_repeat 3 120 0 813 186 0 0 chr4 35596944 35597084 -166731263 - FRAM SINE Alu -16 160 21 256 206 11 11 chr4 35597307 35597399 -166730948 + (TA)n Simple_repeat Simple_repeat 2 93 0 23 33 0 0 chr4 35599527 35599557 -166728790 + AT_rich Low_complexity Low_complexity 1 30 0 331 299 8 30 chr4 35599848 35599982 -166728365 - L2 LINE L2 -33 3280 3150 6091 154 51 28 chr4 35600033 35600966 -166727381 - Tigger3b DNA MER2_type -1798 1230 263 206 62 31 0 chr4 35600966 35600998 -166727349 + (TTA)n Simple_repeat Simple_repeat 3 35 0 6091 154 51 28 chr4 35600998 35601262 -166727085 - Tigger3b DNA MER2_type -2765 263 6 191 370 25 0 chr4 35601786 35601867 -166726480 - L2 LINE L2 -4 3268 3186 332 119 17 0 chr4 35601948 35602007 -166726340 + GA-rich Low_complexity Low_complexity 4 63 0 962 108 0 43 chr4 35602007 35602193 -166726154 + (GAGAA)n Simple_repeat Simple_repeat 1 178 0 31 0 0 0 chr4 35602650 35602681 -166725666 + AT_rich Low_complexity Low_complexity 1 31 0 261 306 0 14 chr4 35603154 35603226 -166725121 + L3 LINE CR1 1375 1445 -132 1359 150 127 8 chr4 35604050 35604310 -166724037 + L1MC1 LINE L1 6023 6313 -20 1730 196 113 30 chr4 35604333 35604803 -166723544 - LTR22 LTR ERVK 0 509 1 667 317 186 33 chr4 35604827 35605560 -166722787 - L2 LINE L2 -212 3101 2259 225 270 135 0 chr4 35605617 35605706 -166722641 - L2 LINE L2 -1319 1995 1895 2671 33 0 0 chr4 35606376 35606682 -166721665 - AluY SINE Alu -5 306 1 9286 191 23 7 chr4 35608517 35611133 -166717214 + L1PA15-16 LINE L1 1 2426 -4423 474 157 0 0 chr4 35611133 35611216 -166717131 + L1PA16 LINE L1 6073 6155 -11 8195 244 36 32 chr4 35611246 35618019 -166710328 - L1PB4 LINE L1 0 6858 14 2444 60 3 0 chr4 35618044 35618344 -166710003 - AluY SINE Alu -8 303 3 227 178 0 0 chr4 35618418 35618463 -166709884 + GA-rich Low_complexity Low_complexity 1 45 0 32 91 0 0 chr4 35619038 35619126 -166709221 + AT_rich Low_complexity Low_complexity 1 88 0 23 68 0 0 chr4 35619180 35619224 -166709123 + AT_rich Low_complexity Low_complexity 1 44 0 239 221 0 52 chr4 35621141 35621218 -166707129 + L1M4 LINE L1 4487 4559 -1587 2137 123 0 10 chr4 35621629 35621937 -166706410 + AluSq SINE Alu 1 305 -8 209 365 0 0 chr4 35622403 35622455 -166705892 + L2 LINE L2 3160 3211 -61 24 53 0 0 chr4 35622753 35622791 -166705556 + AT_rich Low_complexity Low_complexity 1 38 0 1681 210 22 11 chr4 35623804 35624166 -166704181 + MLT1C LTR MaLR 98 463 -4 21 36 0 0 chr4 35625771 35625799 -166702548 + AT_rich Low_complexity Low_complexity 1 28 0 25 75 0 0 chr4 35627271 35627324 -166701023 + AT_rich Low_complexity Low_complexity 1 53 0 23 0 0 0 chr4 35627887 35627910 -166700437 + AT_rich Low_complexity Low_complexity 1 23 0 361 200 0 12 chr4 35628420 35628500 -166699847 - MLT1J2 LTR MaLR -2 448 370 25 31 0 0 chr4 35629020 35629052 -166699295 + AT_rich Low_complexity Low_complexity 1 32 0 183 42 0 0 chr4 35629176 35629200 -166699147 + (TC)n Simple_repeat Simple_repeat 1 24 0 * 270 0 0 0 chr4 35629199 35629229 -166699118 + (CA)n Simple_repeat Simple_repeat 1 30 0 234 62 0 0 chr4 35629229 35629261 -166699086 + (GA)n Simple_repeat Simple_repeat 1 32 0 426 373 11 16 chr4 35629522 35629707 -166698640 - MER5A DNA MER1_type -2 187 4 276 390 32 26 chr4 35629927 35630081 -166698266 + L2 LINE L2 3118 3272 0 525 323 90 22 chr4 35630324 35630547 -166697800 + MIR SINE MIR 1 238 -24 282 340 32 63 chr4 35630971 35631224 -166697123 - L2 LINE L2 -385 2929 2685 2339 89 43 26 chr4 35632471 35632820 -166695527 + THE1A LTR MaLR 1 355 0 202 291 0 0 chr4 35633641 35633696 -166694651 + T-rich Low_complexity Low_complexity 4 58 0 276 391 78 6 chr4 35634551 35634730 -166693617 - MER89-int LTR ERV1 -4064 2737 2546 1122 52 0 19 chr4 35634876 35635031 -166693316 - AluYa5 SINE Alu 0 311 160 404 274 28 62 chr4 35635221 35635509 -166692838 - L1PA16 LINE L1 0 6166 5889 244 0 56 0 chr4 35636217 35636253 -166692094 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 277 146 0 0 chr4 35636259 35636300 -166692047 + L1M4 LINE L1 3519 3559 -2587 1507 178 4 11 chr4 35636308 35636589 -166691758 - AluSc SINE Alu -30 279 1 786 272 61 3 chr4 35636672 35637047 -166691300 - L1M4 LINE L1 -1621 4525 4129 450 368 55 16 chr4 35637060 35637370 -166690977 + L2 LINE L2 2642 2963 -351 6424 235 40 7 chr4 35637666 35638517 -166689830 - L1 LINE L1 -863 5283 4461 185 0 40 0 chr4 35638517 35638542 -166689805 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 6424 235 40 7 chr4 35638542 35639436 -166688911 - L1 LINE L1 -1685 4461 3482 373 371 97 11 chr4 35640378 35640564 -166687783 - MIR SINE MIR -12 250 49 289 357 9 0 chr4 35641026 35641138 -166687209 - L2 LINE L2 -1 3312 3200 475 311 0 0 chr4 35641214 35641349 -166686998 - MIR SINE MIR -16 246 112 3437 260 60 51 chr4 35641386 35642414 -166685933 - L1MC2 LINE L1 -9 6335 5298 684 181 90 21 chr4 35642592 35642736 -166685611 - FRAM SINE Alu -22 154 1 565 309 141 65 chr4 35643170 35643588 -166684759 - LTR67 LTR ERVL 0 557 108 2281 55 0 24 chr4 35643606 35643938 -166684409 - AluY SINE Alu 0 325 1 314 223 87 10 chr4 35644168 35644271 -166684076 + MLT1H LTR MaLR 48 158 -391 21 57 0 0 chr4 35644960 35644995 -166683352 + AT_rich Low_complexity Low_complexity 1 35 0 2327 73 7 7 chr4 35645519 35645822 -166682525 + AluY SINE Alu 1 303 -8 25 65 0 0 chr4 35646208 35646254 -166682093 + AT_rich Low_complexity Low_complexity 1 46 0 22 0 0 0 chr4 35646541 35646563 -166681784 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr4 35647109 35647133 -166681214 + AT_rich Low_complexity Low_complexity 1 24 0 1694 182 29 18 chr4 35647896 35648236 -166680111 - MER2 DNA MER2_type 0 344 1 230 218 0 0 chr4 35649466 35649521 -166678826 - LTR66 LTR ERVL -162 448 394 23 54 0 0 chr4 35649615 35649652 -166678695 + AT_rich Low_complexity Low_complexity 1 37 0 23 54 0 0 chr4 35650182 35650219 -166678128 + AT_rich Low_complexity Low_complexity 1 37 0 1666 169 20 123 chr4 35650751 35651384 -166676963 - LOR1-int LTR ERV1 -3384 4736 4169 2421 123 19 6 chr4 35651456 35651822 -166676525 - THE1C LTR MaLR 0 375 5 5426 152 38 7 chr4 35651825 35652737 -166675610 - THE1C-int LTR MaLR 0 1580 640 207 0 0 0 chr4 35652840 35652863 -166675484 + (A)n Simple_repeat Simple_repeat 1 23 0 9945 187 30 29 chr4 35652864 35653118 -166675229 - L1PA15-16 LINE L1 -4173 2676 2424 1722 146 13 39 chr4 35653118 35653426 -166674921 - AluSg SINE Alu -10 300 1 9945 187 30 29 chr4 35653426 35655302 -166673045 - L1PA15-16 LINE L1 -4425 2424 709 2819 258 30 8 chr4 35655300 35656164 -166672183 - L1M4 LINE L1 -929 5217 4335 * 2565 96 3 6 chr4 35656236 35656592 -166671755 - THE1A LTR MaLR 0 355 1 620 290 52 58 chr4 35656767 35657370 -166670977 - L1MCa LINE L1 -4580 2027 1246 7012 159 65 2 chr4 35657370 35658592 -166669755 - HSMAR2 DNA Mariner -2 1300 3 475 308 70 9 chr4 35658595 35658809 -166669538 - L1MCa LINE L1 -5179 1247 1021 208 222 0 0 chr4 35659454 35659499 -166668848 + (TGAA)n Simple_repeat Simple_repeat 1 45 0 25 0 0 0 chr4 35660668 35660693 -166667654 + AT_rich Low_complexity Low_complexity 1 25 0 22 70 0 0 chr4 35662759 35662802 -166665545 + AT_rich Low_complexity Low_complexity 1 43 0 180 0 0 0 chr4 35662822 35662842 -166665505 + (TA)n Simple_repeat Simple_repeat 1 20 0 2195 109 0 13 chr4 35662916 35663218 -166665129 - AluSx SINE Alu -12 300 3 322 185 215 0 chr4 35663573 35663638 -166664709 - ERVL LTR ERVL -3358 2406 2328 621 225 6 71 chr4 35664456 35664638 -166663709 - MER58B DNA MER1_type 0 341 172 297 281 9 26 chr4 35665188 35665302 -166663045 - LTR33 LTR ERVL 0 521 410 1132 165 106 145 chr4 35665507 35665894 -166662453 + MER57A LTR ERV1 1 372 -31 1588 175 7 21 chr4 35665896 35666187 -166662160 - AluJo SINE Alu -13 299 13 24 32 0 0 chr4 35667289 35667320 -166661027 + AT_rich Low_complexity Low_complexity 1 31 0 28 0 0 0 chr4 35668982 35669010 -166659337 + AT_rich Low_complexity Low_complexity 1 28 0 28 0 0 64 chr4 35670241 35670288 -166658059 + AT_rich Low_complexity Low_complexity 1 44 0 1193 100 58 5 chr4 35670530 35670715 -166657632 + L1PA7 LINE L1 4059 4254 -1888 2237 81 0 0 chr4 35670715 35670991 -166657356 + L1PA7 LINE L1 5858 6153 -1 903 263 63 76 chr4 35671492 35672016 -166656331 - MLT1F LTR MaLR 0 542 26 181 330 147 9 chr4 35673021 35673130 -166655217 - MIR3 SINE MIR -73 135 12 230 350 0 22 chr4 35673411 35673548 -166654799 + (CATATA)n Simple_repeat Simple_repeat 5 138 0 2385 78 0 0 chr4 35673647 35673953 -166654394 - AluY SINE Alu -4 307 2 212 329 31 50 chr4 35674227 35674388 -166653959 - L2 LINE L2 -457 2857 2700 23 54 0 0 chr4 35674395 35674432 -166653915 + AT_rich Low_complexity Low_complexity 1 37 0 537 250 27 124 chr4 35674444 35674816 -166653531 - L2 LINE L2 -575 2739 2404 315 373 45 10 chr4 35675192 35675393 -166652954 + MIR SINE MIR 45 252 -10 267 310 139 23 chr4 35676062 35676191 -166652156 - MIR SINE MIR -70 192 49 202 113 19 19 chr4 35677939 35677992 -166650355 + T-rich Low_complexity Low_complexity 3 55 0 1412 273 56 73 chr4 35678293 35678882 -166649465 + MER45C DNA AcHobo 30 608 -345 1184 126 11 0 chr4 35679454 35679629 -166648718 + AluSg/x SINE Alu 136 312 0 184 377 52 0 chr4 35680427 35680504 -166647843 - MIR SINE MIR -122 140 60 333 289 0 39 chr4 35682109 35682213 -166646134 + MIR SINE MIR 54 153 -55 1278 205 15 11 chr4 35683624 35683897 -166644450 + AluJo SINE Alu 32 305 -7 230 275 43 0 chr4 35683965 35684034 -166644313 + MLT1K LTR MaLR 505 576 -12 2099 112 11 0 chr4 35684349 35684634 -166643713 + AluSg SINE Alu 1 288 -22 1762 59 0 13 chr4 35686187 35686424 -166641923 + L1PA5 LINE L1 5920 6153 -1 25 0 0 0 chr4 35686918 35686943 -166641404 + AT_rich Low_complexity Low_complexity 1 25 0 430 309 148 9 chr4 35687168 35687385 -166640962 - MIR SINE MIR -6 256 10 873 278 60 22 chr4 35687656 35688023 -166640324 - L2 LINE L2 0 3313 2933 597 76 0 0 chr4 35688039 35688118 -166640229 + MADE1 DNA Mariner 1 79 -1 270 216 214 27 chr4 35688315 35688427 -166639920 + MIR SINE MIR 59 192 -16 307 171 171 13 chr4 35690498 35690574 -166637773 - MIR SINE MIR -173 89 2 22 0 0 0 chr4 35690690 35690712 -166637635 + AT_rich Low_complexity Low_complexity 1 22 0 182 333 0 0 chr4 35691118 35691172 -166637175 - L2 LINE L2 0 3272 3219 1489 202 41 3 chr4 35692325 35692617 -166635730 - AluJo SINE Alu -9 303 1 21 57 0 0 chr4 35692698 35692733 -166635614 + AT_rich Low_complexity Low_complexity 1 35 0 308 263 0 13 chr4 35693327 35693403 -166634944 - MER5C DNA MER1_type -248 76 2 230 298 21 89 chr4 35694272 35694463 -166633884 + L2 LINE L2 3136 3313 0 201 171 0 0 chr4 35694911 35694946 -166633401 + (TA)n Simple_repeat Simple_repeat 2 36 0 23 0 0 0 chr4 35695867 35695890 -166632457 + AT_rich Low_complexity Low_complexity 1 23 0 2141 120 0 3 chr4 35696361 35696662 -166631685 - AluSq SINE Alu -13 300 1 199 328 57 52 chr4 35697000 35697192 -166631155 - L3 LINE CR1 -351 1226 1034 1255 193 34 121 chr4 35697367 35697875 -166630472 + MER31B LTR ERV1 1 659 -2 528 243 13 105 chr4 35698430 35698669 -166629678 + L2 LINE L2 3097 3313 0 820 232 100 25 chr4 35698739 35699101 -166629246 - LTR29 LTR ERV1 -2 609 236 24 67 0 0 chr4 35700007 35700052 -166628295 + AT_rich Low_complexity Low_complexity 1 45 0 1116 187 97 19 chr4 35700338 35700606 -166627741 - AluJo SINE Alu -11 301 13 360 274 103 17 chr4 35700947 35701122 -166627225 + L1ME3A LINE L1 5763 5952 -218 238 203 17 17 chr4 35701397 35701456 -166626891 + (CA)n Simple_repeat Simple_repeat 2 60 0 21 36 0 0 chr4 35701460 35701488 -166626859 + AT_rich Low_complexity Low_complexity 1 28 0 236 148 19 19 chr4 35701787 35701841 -166626506 + (TTG)n Simple_repeat Simple_repeat 1 54 0 588 220 56 59 chr4 35702090 35702417 -166625930 - LTR46 LTR ERV1 -30 430 3 220 298 93 19 chr4 35702603 35702764 -166625583 - MIR SINE MIR -2 260 88 192 371 28 7 chr4 35702869 35703012 -166625335 + MIR SINE MIR 106 251 -11 22 35 0 0 chr4 35703540 35703569 -166624778 + AT_rich Low_complexity Low_complexity 1 29 0 200 222 0 0 chr4 35704087 35704132 -166624215 + (TA)n Simple_repeat Simple_repeat 1 45 0 218 355 132 8 chr4 35704152 35704273 -166624074 - L2 LINE L2 -4 3268 3133 216 0 0 0 chr4 35704528 35704552 -166623795 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1627 240 32 45 chr4 35704845 35705383 -166622964 - LTR55 LTR ERV -17 531 1 844 122 0 30 chr4 35706252 35706383 -166621964 + FLAM_C SINE Alu 1 127 -6 391 280 286 3 chr4 35707046 35707357 -166620990 + L1ME2 LINE L1 4522 4920 -1226 985 210 5 20 chr4 35707357 35707584 -166620763 + AluJo SINE Alu 86 309 0 2245 255 97 42 chr4 35707614 35708769 -166619578 + L1ME2 LINE L1 4942 6148 -16 21 0 0 0 chr4 35709381 35709402 -166618945 + AT_rich Low_complexity Low_complexity 1 21 0 589 308 51 21 chr4 35709513 35709747 -166618600 - MIR SINE MIR -16 246 6 2314 137 8 20 chr4 35710272 35710665 -166617682 - L1PA15 LINE L1 -2 6163 5776 706 300 56 32 chr4 35710877 35711411 -166616936 - L1M4 LINE L1 -2271 3875 3329 1106 185 9 31 chr4 35711453 35711675 -166616672 - AluJb SINE Alu -14 298 82 7401 35 41 0 chr4 35711840 35713031 -166615316 - L1PA5 LINE L1 -3 6151 4944 533 56 0 0 chr4 35713031 35713102 -166615245 + L1PA5 LINE L1 4861 4931 -1215 1777 199 14 22 chr4 35713111 35713663 -166614684 - L1PA15-16 LINE L1 -3637 2509 1955 2459 193 112 83 chr4 35713947 35714832 -166613515 - LTR28 LTR ERV1 0 1020 1 2797 10 0 0 chr4 35714942 35715253 -166613094 + AluYa5 SINE Alu 1 311 0 185 0 40 0 chr4 35715371 35715396 -166612951 + (GGAA)n Simple_repeat Simple_repeat 1 26 0 22 0 0 0 chr4 35716462 35716484 -166611863 + AT_rich Low_complexity Low_complexity 1 22 0 665 159 0 58 chr4 35716775 35716913 -166611434 - FLAM_C SINE Alu 0 133 4 24 32 0 0 chr4 35717086 35717117 -166611230 + AT_rich Low_complexity Low_complexity 1 31 0 25 51 0 0 chr4 35717178 35717217 -166611130 + AT_rich Low_complexity Low_complexity 1 39 0 242 189 0 38 chr4 35717456 35717509 -166610838 - L2 LINE L2 -5 3267 3217 1063 292 69 14 chr4 35717673 35718108 -166610239 - LTR40b LTR ERVL 0 462 4 473 326 26 26 chr4 35718251 35718444 -166609903 - MLT1I LTR MaLR -169 240 48 340 107 40 208 chr4 35719434 35719583 -166608764 - L1MA9 LINE L1 -1 6311 6188 351 183 10 19 chr4 35719852 35719956 -166608391 + CT-rich Low_complexity Low_complexity 4 106 0 1927 228 59 29 chr4 35720011 35720499 -166607848 - MLT1D LTR MaLR 0 505 3 395 38 19 0 chr4 35720553 35720606 -166607741 + (TCTA)n Simple_repeat Simple_repeat 3 56 0 3020 164 33 2 chr4 35721470 35721981 -166606366 - MER1A DNA MER1_type 0 527 1 234 342 38 13 chr4 35722974 35723124 -166605223 + MIR SINE MIR 3 157 -61 1359 235 39 28 chr4 35723139 35723310 -166605037 - MLT1B LTR MaLR -2 388 220 388 156 0 13 chr4 35723310 35723387 -166604960 - MADE1 DNA Mariner 0 80 5 1359 235 39 28 chr4 35723387 35723573 -166604774 - MLT1B LTR MaLR -170 220 27 268 277 8 42 chr4 35725809 35725928 -166602419 + MLT1K LTR MaLR 47 161 -388 1714 151 37 0 chr4 35726188 35726306 -166602041 + AluSx SINE Alu 3 115 -198 278 0 54 0 chr4 35726306 35726343 -166602004 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1714 151 37 0 chr4 35726343 35726525 -166601822 + AluSx SINE Alu 115 313 0 359 333 34 0 chr4 35726686 35726803 -166601544 + L2 LINE L2 3187 3307 -6 300 313 41 27 chr4 35727293 35727440 -166600907 + MLT1K LTR MaLR 329 477 -111 21 0 0 0 chr4 35727481 35727502 -166600845 + AT_rich Low_complexity Low_complexity 1 21 0 245 368 53 8 chr4 35727651 35727784 -166600563 - L2 LINE L2 -806 2508 2370 586 315 48 23 chr4 35728080 35728316 -166600031 - MIR SINE MIR -21 241 2 334 333 103 0 chr4 35728416 35728533 -166599814 - MIR3 SINE MIR -39 169 41 222 37 0 0 chr4 35728903 35728930 -166599417 + (CA)n Simple_repeat Simple_repeat 1 27 0 344 305 227 39 chr4 35729881 35730242 -166598105 - MLT1A1 LTR MaLR 0 549 121 1401 213 3 11 chr4 35730617 35730903 -166597444 - AluJo SINE Alu -26 286 3 1946 147 0 0 chr4 35731043 35731328 -166597019 + AluSx SINE Alu 1 285 -27 23 0 0 0 chr4 35731853 35731876 -166596471 + AT_rich Low_complexity Low_complexity 1 23 0 40 49 0 0 chr4 35734509 35734570 -166593777 + AT_rich Low_complexity Low_complexity 1 61 0 5090 174 22 24 chr4 35734610 35735646 -166592701 - L1 LINE L1 -1796 4350 3317 228 67 0 0 chr4 35735679 35735709 -166592638 + (TA)n Simple_repeat Simple_repeat 1 30 0 2272 173 82 46 chr4 35735726 35735974 -166592373 + L1MA6 LINE L1 5743 5981 -319 3457 146 0 6 chr4 35735974 35736503 -166591844 - MER1A DNA MER1_type -1 526 1 2272 173 82 46 chr4 35736503 35736793 -166591554 + L1MA6 LINE L1 5981 6300 0 1010 269 77 76 chr4 35736799 35737432 -166590915 - L1ME3A LINE L1 -72 6098 5465 255 222 30 50 chr4 35737613 35737712 -166590635 - L1ME3A LINE L1 -873 5273 5177 523 271 67 61 chr4 35737754 35738216 -166590131 - L1ME3A LINE L1 -1141 5005 4541 32 0 0 0 chr4 35738333 35738365 -166589982 + AT_rich Low_complexity Low_complexity 1 32 0 747 176 14 14 chr4 35738791 35738933 -166589414 - MLT1A1 LTR MaLR -223 142 1 365 311 68 31 chr4 35738998 35739380 -166588967 + L1MEc LINE L1 548 943 -5453 1004 275 61 50 chr4 35739397 35739937 -166588410 + MLT1E1 LTR MaLR 2 505 -119 25 0 0 0 chr4 35740037 35740062 -166588285 + AT_rich Low_complexity Low_complexity 1 25 0 1953 138 21 86 chr4 35740709 35741129 -166587218 + L1MA7 LINE L1 5705 6097 -194 24 0 0 0 chr4 35743459 35743483 -166584864 + AT_rich Low_complexity Low_complexity 1 24 0 213 39 0 0 chr4 35743624 35743650 -166584697 + (CATG)n Simple_repeat Simple_repeat 1 26 0 24 0 0 0 chr4 35746057 35746081 -166582266 + AT_rich Low_complexity Low_complexity 1 24 0 504 243 101 0 chr4 35746521 35746669 -166581678 - MIR SINE MIR 0 262 100 2646 26 0 0 chr4 35746820 35747123 -166581224 - AluYa5 SINE Alu -8 303 1 488 251 107 32 chr4 35747513 35747700 -166580647 - MER67D LTR ERV1 -8 506 306 1237 202 25 83 chr4 35747746 35748073 -166580274 - MER67D LTR ERV1 -203 311 4 372 268 73 131 chr4 35748117 35748430 -166579917 - L1MEc LINE L1 -6094 302 8 53 49 0 0 chr4 35748466 35748547 -166579800 + AT_rich Low_complexity Low_complexity 1 81 0 23 33 0 0 chr4 35748579 35748609 -166579738 + AT_rich Low_complexity Low_complexity 1 30 0 578 188 0 16 chr4 35748619 35748747 -166579600 - L1MB1 LINE L1 -1 6167 6042 250 255 169 56 chr4 35748747 35748978 -166579369 - Charlie7 DNA MER1_type -1890 722 466 1920 213 55 28 chr4 35749138 35749631 -166578716 + L1MC3 LINE L1 6629 7134 -651 212 175 0 0 chr4 35750438 35750478 -166577869 + T-rich Low_complexity Low_complexity 1 40 0 980 107 0 0 chr4 35750936 35751067 -166577280 - AluSg1 SINE Alu -178 131 1 21 0 0 0 chr4 35751572 35751593 -166576754 + AT_rich Low_complexity Low_complexity 1 21 0 1262 271 99 45 chr4 35752596 35753180 -166575167 - MLT1E2 LTR MaLR -2 624 7 198 0 0 0 chr4 35753259 35753281 -166575066 + (CA)n Simple_repeat Simple_repeat 2 23 0 183 220 0 0 chr4 35753375 35753425 -166574922 + (CA)n Simple_repeat Simple_repeat 2 51 0 2166 136 0 0 chr4 35753687 35753989 -166574358 - AluSx SINE Alu -10 302 1 416 212 159 26 chr4 35754102 35754253 -166574094 + MLT1E3 LTR MaLR 1 171 -483 3973 108 5 49 chr4 35754281 35754912 -166573435 + LTR14B LTR ERVK 6 608 0 1013 306 102 22 chr4 35754965 35755416 -166572931 + MLT1E3 LTR MaLR 136 622 -2 184 151 19 38 chr4 35755743 35755796 -166572551 + GA-rich Low_complexity Low_complexity 3 54 0 202 283 19 0 chr4 35757039 35757092 -166571255 + MIR3 SINE MIR 112 165 -43 25 0 0 0 chr4 35758352 35758377 -166569970 + AT_rich Low_complexity Low_complexity 1 25 0 1603 180 72 67 chr4 35758648 35759037 -166569310 - MER57A LTR ERV1 0 403 13 748 132 0 16 chr4 35759040 35759161 -166569186 - MER57A-int LTR ERV1 -29 7508 7390 265 182 36 0 chr4 35759182 35759237 -166569110 - LTR54B LTR ERV1 -210 288 232 469 176 88 32 chr4 35759290 35759415 -166568932 - LTR54B LTR ERV1 -366 132 1 5541 219 25 14 chr4 35759466 35760685 -166567662 - MER57A-int LTR ERV1 -470 7067 5835 1236 221 51 102 chr4 35761026 35761577 -166566770 - MER57A-int LTR ERV1 -1714 5823 5301 1295 161 0 5 chr4 35761680 35761897 -166566450 - THE1C-int LTR MaLR -1364 216 1 2449 134 5 5 chr4 35761897 35762270 -166566077 - THE1C LTR MaLR 0 375 3 392 235 38 52 chr4 35762317 35762722 -166565625 - MER4-int LTR ERV1 -2561 3385 1757 30 27 0 0 chr4 35762741 35762778 -166565569 + AT_rich Low_complexity Low_complexity 1 37 0 563 161 71 171 chr4 35762893 35763104 -166565243 - MER4-int LTR ERV1 -2878 3453 3264 817 159 13 92 chr4 35763156 35763383 -166564964 - MER4-int LTR ERV1 -3059 3272 3064 264 194 19 94 chr4 35763357 35763515 -166564832 - MER4-int LTR ERV1 -3728 1395 1094 * 283 269 35 14 chr4 35763487 35763628 -166564719 - MER4-int LTR ERV1 -4614 1984 1841 909 224 65 24 chr4 35763638 35763884 -166564463 - MER34C LTR ERV1 -175 410 155 2695 215 31 49 chr4 35764063 35764762 -166563585 - MER4-int LTR ERV1 -6695 842 156 442 269 0 9 chr4 35764762 35764870 -166563477 + MLT1D LTR MaLR 85 191 -314 6301 179 8 7 chr4 35764870 35766727 -166561620 + L1PB1 LINE L1 3922 5782 -369 231 114 0 0 chr4 35766727 35766762 -166561585 + (CA)n Simple_repeat Simple_repeat 2 36 0 6301 179 8 7 chr4 35766762 35767128 -166561219 + L1PB1 LINE L1 5782 6146 -5 684 214 73 62 chr4 35767151 35767440 -166560907 + L1MC5 LINE L1 7026 7317 -644 2152 238 79 26 chr4 35767958 35768619 -166559728 + Charlie1a DNA MER1_type 1 696 -759 1057 158 19 81 chr4 35768619 35768878 -166559469 + L1MA10 LINE L1 6082 6324 -10 1279 174 151 6 chr4 35768887 35769198 -166559149 + Charlie1a DNA MER1_type 701 1056 -399 741 210 135 5 chr4 35769290 35769490 -166558857 + MLT1D LTR MaLR 277 502 -3 210 143 0 0 chr4 35769995 35770030 -166558317 + (GAAAA)n Simple_repeat Simple_repeat 4 38 0 192 427 10 0 chr4 35770317 35770413 -166557934 - MIR SINE MIR -70 138 42 3572 193 18 22 chr4 35770548 35771285 -166557062 - MER50 LTR ERV1 0 734 1 25 31 0 0 chr4 35771321 35771353 -166556994 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr4 35771460 35771483 -166556864 + AT_rich Low_complexity Low_complexity 1 23 0 234 100 25 25 chr4 35771678 35771718 -166556629 - MER4A LTR ERV1 -566 98 59 14621 129 100 50 chr4 35771758 35775715 -166552632 - MER4A-int LTR ERV1 -2 6596 1006 5132 148 88 19 chr4 35775729 35776682 -166551665 - MER4A-int LTR ERV1 -5421 1177 199 2795 83 193 25 chr4 35776698 35776846 -166551501 - MER4A-int LTR ERV1 -6035 563 441 230 0 33 0 chr4 35776846 35776876 -166551471 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2795 83 193 25 chr4 35776876 35777209 -166551138 - MER4A-int LTR ERV1 -6157 441 1 1409 167 37 58 chr4 35777212 35777565 -166550782 - MER4A LTR ERV1 0 664 261 283 153 361 0 chr4 35777565 35777637 -166550710 - MER4A LTR ERV1 -566 98 1 369 291 146 0 chr4 35777976 35778196 -166550151 - L1MC4a LINE L1 -1882 5926 5675 181 182 38 31 chr4 35778213 35778372 -166549975 + (TA)n Simple_repeat Simple_repeat 2 161 0 539 338 41 20 chr4 35778989 35779282 -166549065 - LTR16C LTR ERVL 0 491 193 1469 224 17 14 chr4 35779548 35779896 -166548451 - MER4D LTR ERV1 0 903 555 388 221 23 0 chr4 35779952 35780038 -166548309 - MER49 LTR ERV1 -638 285 198 1653 134 9 94 chr4 35780047 35780389 -166547958 - AluSq SINE Alu 0 313 1 766 297 22 4 chr4 35780587 35780816 -166547531 + MER90 LTR ERV1 382 614 0 432 55 0 0 chr4 35781002 35781057 -166547290 + (TG)n Simple_repeat Simple_repeat 2 56 0 281 47 23 0 chr4 35781057 35781100 -166547247 + (TA)n Simple_repeat Simple_repeat 2 45 0 2275 304 125 35 chr4 35781150 35782616 -166545731 + L2 LINE L2 781 2378 -936 1119 112 0 0 chr4 35782678 35782830 -166545517 + AluSg/x SINE Alu 144 295 -17 280 229 9 9 chr4 35783442 35783547 -166544800 + (TA)n Simple_repeat Simple_repeat 1 105 0 240 200 0 0 chr4 35784027 35784082 -166544265 + GA-rich Low_complexity Low_complexity 2 56 0 300 91 0 0 chr4 35784116 35784160 -166544187 + (GGGA)n Simple_repeat Simple_repeat 3 46 0 1743 189 23 12 chr4 35784617 35784960 -166543387 - MER7A DNA MER2_type 0 346 2 23 78 0 0 chr4 35784960 35785011 -166543336 + AT_rich Low_complexity Low_complexity 1 51 0 22 56 0 0 chr4 35785094 35785130 -166543217 + AT_rich Low_complexity Low_complexity 1 36 0 31 116 0 0 chr4 35785160 35785324 -166543023 + AT_rich Low_complexity Low_complexity 1 164 0 5502 145 22 1 chr4 35785687 35786629 -166541718 - L1MA3 LINE L1 -27 7697 6736 324 0 0 0 chr4 35786641 35786677 -166541670 + (T)n Simple_repeat Simple_repeat 1 36 0 6970 173 21 14 chr4 35787067 35788458 -166539889 - L1MA3 LINE L1 -827 6738 5339 12475 203 56 4 chr4 35788460 35792216 -166536131 - L1MA3 LINE L1 -3270 4295 13 25 0 0 0 chr4 35792365 35792390 -166535957 + AT_rich Low_complexity Low_complexity 1 25 0 281 193 12 48 chr4 35792562 35792645 -166535702 + (TATATG)n Simple_repeat Simple_repeat 3 82 0 27 49 0 0 chr4 35792717 35792758 -166535589 + AT_rich Low_complexity Low_complexity 1 41 0 4527 196 33 37 chr4 35792782 35793257 -166535090 - L1MA9 LINE L1 -32 6168 5693 383 38 19 0 chr4 35793257 35793310 -166535037 + (CA)n Simple_repeat Simple_repeat 2 55 0 4527 196 33 37 chr4 35793310 35794594 -166533753 - L1MA9 LINE L1 -507 5693 4406 1529 263 55 28 chr4 35794639 35795073 -166533274 - L1MA9 LINE L1 -5506 449 4 25 31 0 0 chr4 35795160 35795192 -166533155 + AT_rich Low_complexity Low_complexity 1 32 0 341 161 0 0 chr4 35795446 35795502 -166532845 + AluJb SINE Alu 86 141 -161 276 77 0 0 chr4 35795608 35795647 -166532700 + (CA)n Simple_repeat Simple_repeat 2 40 0 21 0 0 0 chr4 35795649 35795670 -166532677 + AT_rich Low_complexity Low_complexity 1 21 0 351 78 0 0 chr4 35795823 35795874 -166532473 + (TA)n Simple_repeat Simple_repeat 1 51 0 22 0 0 0 chr4 35798585 35798607 -166529740 + AT_rich Low_complexity Low_complexity 1 22 0 208 234 21 0 chr4 35798629 35798676 -166529671 + GA-rich Low_complexity Low_complexity 2 49 0 216 0 0 0 chr4 35798859 35798883 -166529464 + (TA)n Simple_repeat Simple_repeat 2 25 0 2573 46 0 3 chr4 35798883 35799190 -166529157 - AluY SINE Alu -5 306 1 27 0 0 0 chr4 35799190 35799217 -166529130 + AT_rich Low_complexity Low_complexity 1 27 0 339 331 61 22 chr4 35801329 35801510 -166526837 + MIR SINE MIR 75 262 0 2300 172 31 40 chr4 35801540 35802017 -166526330 - L1MA9 LINE L1 -45 6331 5859 2569 201 35 7 chr4 35802027 35802618 -166525729 - L1MA9 LINE L1 -1254 4956 4349 781 192 33 0 chr4 35802619 35802770 -166525577 + L1PB4 LINE L1 4089 4244 -1902 2196 164 9 35 chr4 35802770 35803202 -166525145 + L1PB4 LINE L1 5734 6156 0 1008 259 20 19 chr4 35803204 35804008 -166524339 - L1MA9 LINE L1 -4279 1932 961 401 378 47 29 chr4 35804865 35805249 -166523098 - L1MA9 LINE L1 -5750 391 1 261 304 22 11 chr4 35805498 35805590 -166522757 - MIR SINE MIR -133 129 37 313 364 64 55 chr4 35806036 35806379 -166521968 - L2 LINE L2 -1 3271 2926 1056 233 65 106 chr4 35807078 35807605 -166520742 - MLT1D LTR MaLR 0 505 1 28 48 0 0 chr4 35807783 35807825 -166520522 + AT_rich Low_complexity Low_complexity 1 42 0 180 254 0 0 chr4 35808115 35808174 -166520173 + GA-rich Low_complexity Low_complexity 3 61 0 845 142 0 8 chr4 35808923 35809057 -166519290 + AluSq/x SINE Alu 1 133 -179 2278 95 3 0 chr4 35809065 35809370 -166518977 + AluSq SINE Alu 1 306 -7 2112 129 39 36 chr4 35809893 35810256 -166518091 - THE1B LTR MaLR 0 364 1 25 0 0 0 chr4 35812485 35812510 -166515837 + AT_rich Low_complexity Low_complexity 1 25 0 13195 155 20 0 chr4 35813303 35816428 -166511919 - L1PA11 LINE L1 0 6174 2996 410 249 99 17 chr4 35816735 35816916 -166511431 + MIR SINE MIR 53 248 -14 28 29 0 0 chr4 35817221 35817256 -166511091 + AT_rich Low_complexity Low_complexity 1 35 0 23 54 0 0 chr4 35817312 35817349 -166510998 + AT_rich Low_complexity Low_complexity 1 37 0 438 309 108 43 chr4 35817457 35817928 -166510419 - L2 LINE L2 -19 3294 2782 320 279 87 58 chr4 35818002 35818210 -166510137 + MIR SINE MIR 49 262 0 233 354 112 19 chr4 35818208 35818414 -166509933 - L2 LINE L2 -604 2710 2486 * 25 65 0 0 chr4 35818508 35818554 -166509793 + AT_rich Low_complexity Low_complexity 1 46 0 23 0 0 0 chr4 35818831 35818854 -166509493 + AT_rich Low_complexity Low_complexity 1 23 0 33 85 0 0 chr4 35819117 35819199 -166509148 + AT_rich Low_complexity Low_complexity 1 82 0 33 43 0 0 chr4 35819258 35819305 -166509042 + AT_rich Low_complexity Low_complexity 1 47 0 1913 181 2 61 chr4 35819902 35820312 -166508035 + MLT1B LTR MaLR 1 386 -4 202 300 29 0 chr4 35871121 35871191 -166457156 + MIR3 SINE MIR 87 158 -50 275 250 167 0 chr4 35871534 35871618 -166456729 - MIR SINE MIR -8 254 157 2162 76 7 7 chr4 35871642 35871919 -166456428 - AluY SINE Alu -33 278 2 1771 292 31 43 chr4 35872195 35873151 -166455196 + L1MEc LINE L1 210 1154 -5242 739 219 32 102 chr4 35873176 35873731 -166454616 + L1ME LINE L1 5080 5597 -569 21 36 0 0 chr4 35873817 35873845 -166454502 + AT_rich Low_complexity Low_complexity 1 28 0 235 295 76 46 chr4 35874184 35874486 -166453861 - L1MEd LINE L1 -4869 1250 940 22 0 0 0 chr4 35874569 35874591 -166453756 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4 35875260 35875281 -166453066 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr4 35875370 35875399 -166452948 + AT_rich Low_complexity Low_complexity 1 29 0 601 249 22 131 chr4 35875399 35875805 -166452542 + MER57A LTR ERV1 42 403 0 23 0 0 0 chr4 35876399 35876422 -166451925 + AT_rich Low_complexity Low_complexity 1 23 0 317 154 15 0 chr4 35876489 35876554 -166451793 - L1MA3 LINE L1 0 6305 6240 25 0 0 0 chr4 35876623 35876648 -166451699 + AT_rich Low_complexity Low_complexity 1 25 0 41 21 0 0 chr4 35876890 35876938 -166451409 + AT_rich Low_complexity Low_complexity 1 48 0 1136 275 91 14 chr4 35876958 35877376 -166450971 - LTR16A LTR ERVL 0 450 1 2270 62 16 20 chr4 35878174 35878480 -166449867 - AluY SINE Alu -6 305 1 30 59 0 0 chr4 35878865 35878916 -166449431 + AT_rich Low_complexity Low_complexity 1 51 0 215 267 13 0 chr4 35879633 35879708 -166448639 + GA-rich Low_complexity Low_complexity 2 77 0 184 324 0 29 chr4 35879824 35879892 -166448455 - MIR3 SINE MIR -7 201 136 206 211 0 35 chr4 35880803 35880860 -166447487 + (TTAA)n Simple_repeat Simple_repeat 1 55 0 237 108 0 0 chr4 35881152 35881189 -166447158 + (GAAA)n Simple_repeat Simple_repeat 4 40 0 293 234 31 0 chr4 35881781 35881845 -166446502 + MLT1E2 LTR MaLR 1 66 -439 337 260 0 0 chr4 35881858 35881935 -166446412 + MER2 DNA MER2_type 22 98 -247 243 178 0 151 chr4 35881964 35882037 -166446310 + MER2 DNA MER2_type 284 345 0 693 252 34 74 chr4 35882037 35882311 -166446036 + MLT1E2 LTR MaLR 107 371 -134 2738 195 12 56 chr4 35882311 35882951 -166445396 + LTR9 LTR ERV1 1 612 0 9824 176 23 13 chr4 35882951 35883577 -166444770 + HUERS-P3 LTR ERV1 1 619 -8300 189 0 0 0 chr4 35883577 35883598 -166444749 + (TC)n Simple_repeat Simple_repeat 2 22 0 9824 176 23 13 chr4 35883598 35885265 -166443082 + HUERS-P3 LTR ERV1 619 2401 -6518 3673 100 5 51 chr4 35885342 35885913 -166442434 + HUERS-P3 LTR ERV1 2098 2642 -4776 2323 180 27 23 chr4 35885913 35886352 -166441995 - LTR8 LTR ERV1 -250 441 1 20570 145 48 33 chr4 35886352 35886676 -166441671 + HUERS-P3 LTR ERV1 3073 3391 -4027 1838 164 3 7 chr4 35886676 35886969 -166441378 - AluSx SINE Alu -17 295 4 20570 145 48 33 chr4 35886969 35890454 -166437893 + HUERS-P3 LTR ERV1 3391 6939 -479 865 129 35 24 chr4 35890468 35890638 -166437709 + HUERS-P3 LTR ERV1 2388 2559 -2456 951 124 4 182 chr4 35890795 35891037 -166437310 + HUERS-P3 LTR ERV1 8720 8918 -1 2437 199 32 63 chr4 35891037 35891669 -166436678 + LTR9 LTR ERV1 1 612 0 523 285 7 0 chr4 35891669 35891806 -166436541 + MLT1E2 LTR MaLR 368 505 0 1948 210 141 24 chr4 35892008 35892222 -166436125 + MER101B LTR ERV1 1 188 -382 1980 188 22 3 chr4 35892222 35892579 -166435768 + THE1B LTR MaLR 1 364 0 1948 210 141 24 chr4 35892579 35892601 -166435746 + MER101B LTR ERV1 188 206 -364 2312 142 6 0 chr4 35892601 35892954 -166435393 + THE1A LTR MaLR 1 355 0 1948 210 141 24 chr4 35892954 35893226 -166435121 + MER101B LTR ERV1 206 570 0 188 343 202 0 chr4 35894073 35894172 -166434175 - L2 LINE L2 0 3313 3195 26 30 0 0 chr4 35894294 35894327 -166434020 + AT_rich Low_complexity Low_complexity 1 33 0 2374 208 38 2 chr4 35894412 35894863 -166433484 + L1PA13 LINE L1 6 472 -7109 1320 184 95 48 chr4 35894863 35895221 -166433126 - THE1C LTR MaLR 0 375 1 8359 196 32 7 chr4 35895228 35896826 -166431521 - MSTA-int LTR MaLR -8 1643 5 1896 166 91 13 chr4 35896830 35897227 -166431120 - MSTA LTR MaLR 0 428 1 6206 223 42 77 chr4 35897228 35901385 -166426962 + L1PA13 LINE L1 471 4441 -3143 363 182 0 0 chr4 35901385 35901451 -166426896 + L1PA13 LINE L1 4950 5015 -2569 4707 120 29 17 chr4 35901463 35902523 -166425824 + L1PA13 LINE L1 6352 7415 -186 21 0 0 0 chr4 35902972 35902993 -166425354 + AT_rich Low_complexity Low_complexity 1 21 0 4400 168 36 5 chr4 35903036 35903904 -166424443 - MER4D LTR ERV1 -4 866 1 2230 112 0 0 chr4 35904303 35904606 -166423741 - AluY SINE Alu -8 303 1 1606 134 9 0 chr4 35905134 35905366 -166422981 + AluSx SINE Alu 63 296 -16 24 0 0 0 chr4 35905547 35905571 -166422776 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr4 35905840 35905864 -166422483 + AT_rich Low_complexity Low_complexity 1 24 0 21 82 0 0 chr4 35906303 35906352 -166421995 + AT_rich Low_complexity Low_complexity 1 49 0 1458 271 40 36 chr4 35908610 35909215 -166419132 - MER92B LTR ERV1 0 636 30 7607 23 1 4 chr4 35909348 35910406 -166417941 + L1PA3 LINE L1 5100 6155 0 309 281 67 0 chr4 35910453 35910588 -166417759 - MER31-int LTR ERV1 -434 4502 4359 367 208 92 42 chr4 35910676 35910796 -166417551 - LTR37A LTR ERV1 -297 129 4 1764 258 64 85 chr4 35910797 35912528 -166415819 - MER31-int LTR ERV1 -679 4257 2477 255 268 62 39 chr4 35912584 35912763 -166415584 - MER31-int LTR ERV1 -2567 2369 2187 1517 176 103 123 chr4 35912846 35913449 -166414898 - LTR38B LTR ERV1 -18 592 2 1633 244 45 33 chr4 35913509 35914310 -166414037 - MER31-int LTR ERV1 -3650 1286 427 1598 234 91 47 chr4 35914881 35915262 -166413085 - MER92B LTR ERV1 -52 584 169 408 40 0 0 chr4 35915262 35915312 -166413035 + (TG)n Simple_repeat Simple_repeat 2 51 0 1598 234 91 47 chr4 35915312 35915489 -166412858 - MER92B LTR ERV1 -467 169 1 197 184 82 20 chr4 35919166 35919215 -166409132 + L2 LINE L2 3261 3312 -1 22 35 0 0 chr4 35919304 35919333 -166409014 + AT_rich Low_complexity Low_complexity 1 29 0 210 143 0 0 chr4 35919461 35919496 -166408851 + (CA)n Simple_repeat Simple_repeat 2 36 0 187 149 21 21 chr4 35920130 35920177 -166408170 + (TCTA)n Simple_repeat Simple_repeat 3 49 0 302 182 15 0 chr4 35920264 35920330 -166408017 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 367 341 116 31 chr4 35920387 35920645 -166407702 - L3 LINE CR1 -94 1483 1204 1247 94 6 9 chr4 35920924 35921106 -166407241 - L1PA7 LINE L1 -869 5277 5108 6550 75 7 0 chr4 35921106 35921984 -166406363 + L1PA7 LINE L1 5271 6154 0 1247 94 6 9 chr4 35921984 35922007 -166406340 - L1P LINE L1 -1038 5108 5086 1792 251 77 20 chr4 35922041 35922534 -166405813 - MLT1E LTR MaLR -68 525 5 957 272 103 12 chr4 35922845 35923271 -166405076 - MLT1C LTR MaLR -2 465 1 341 361 13 13 chr4 35923874 35924032 -166404315 - MIR SINE MIR -93 169 12 2202 100 33 0 chr4 35924263 35924563 -166403784 - AluY SINE Alu 0 311 2 1427 235 7 0 chr4 35924709 35924986 -166403361 - MER44D DNA MER2_type -3 602 452 639 233 8 0 chr4 35924982 35925102 -166403245 - MER44D DNA MER2_type -584 121 1 * 1587 179 62 22 chr4 35925118 35925475 -166402872 + THE1C LTR MaLR 1 371 -4 9026 153 6 46 chr4 35925482 35927125 -166401222 + THE1C-int LTR MaLR 4 1580 0 1520 140 89 78 chr4 35927125 35927423 -166400924 + THE1C LTR MaLR 1 305 -70 2267 115 0 3 chr4 35927423 35927737 -166400610 - AluSq SINE Alu 0 313 1 1520 140 89 78 chr4 35927737 35927809 -166400538 + THE1C LTR MaLR 305 375 0 21 0 0 0 chr4 35928108 35928129 -166400218 + AT_rich Low_complexity Low_complexity 1 21 0 40 59 0 0 chr4 35928468 35928536 -166399811 + AT_rich Low_complexity Low_complexity 1 68 0 880 238 84 0 chr4 35928684 35929004 -166399343 - Charlie1 DNA MER1_type -41 2720 2374 369 0 0 0 chr4 35929411 35929452 -166398895 + (TAA)n Simple_repeat Simple_repeat 2 42 0 1199 350 31 28 chr4 35929514 35929979 -166398368 - ERVL LTR ERVL -989 4775 4306 1641 193 58 25 chr4 35929979 35930342 -166398005 + THE1C LTR MaLR 1 375 0 1199 350 31 28 chr4 35930342 35930585 -166397762 - ERVL LTR ERVL -1458 4306 4065 578 349 108 32 chr4 35930947 35931201 -166397146 - ERVL LTR ERVL -2046 3439 3206 210 37 0 0 chr4 35931201 35931228 -166397119 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 578 349 108 32 chr4 35931228 35931649 -166396698 - ERVL LTR ERVL -2279 3206 2810 691 247 11 45 chr4 35933279 35933457 -166394890 + MER45A DNA AcHobo 3 174 -4 263 325 26 0 chr4 35933656 35933770 -166394577 - LTR33 LTR ERVL -38 483 367 28 0 0 0 chr4 35934750 35934778 -166393569 + AT_rich Low_complexity Low_complexity 1 28 0 22 88 0 0 chr4 35935923 35935980 -166392367 + AT_rich Low_complexity Low_complexity 1 57 0 24 0 0 0 chr4 35937783 35937807 -166390540 + AT_rich Low_complexity Low_complexity 1 24 0 1090 289 43 26 chr4 35938978 35939438 -166388909 - MLT1L LTR MaLR -147 468 1 1047 209 29 0 chr4 35940419 35940625 -166387722 - MER20 DNA MER1_type -4 215 4 196 429 75 33 chr4 35940871 35941111 -166387236 - L2 LINE L2 -8 3264 3015 2034 168 71 30 chr4 35941371 35941805 -166386542 + LTR47A LTR ERVL 1 452 0 190 380 88 6 chr4 35942462 35942633 -166385714 - L2 LINE L2 -1342 1972 1788 1436 207 54 76 chr4 35942633 35943149 -166385198 + MLT1D LTR MaLR 1 505 0 934 324 133 24 chr4 35943198 35943968 -166384379 - L2 LINE L2 0 3313 2449 1987 127 0 0 chr4 35944023 35944320 -166384027 + AluSg SINE Alu 5 301 0 271 331 74 16 chr4 35944736 35944857 -166383490 - L3b LINE CR1 -20 1563 1436 180 111 0 0 chr4 35945782 35945809 -166382538 + (TG)n Simple_repeat Simple_repeat 2 28 0 201 311 0 11 chr4 35946905 35946995 -166381352 + (TA)n Simple_repeat Simple_repeat 2 90 0 217 234 234 13 chr4 35947029 35947106 -166381241 - MIR SINE MIR -142 120 27 201 232 0 71 chr4 35947369 35947425 -166380922 - L2 LINE L2 0 3313 3262 26 74 0 0 chr4 35947780 35947834 -166380513 + AT_rich Low_complexity Low_complexity 1 54 0 668 325 50 9 chr4 35948229 35948648 -166379699 - L1M4 LINE L1 -3372 2774 2339 672 247 101 46 chr4 35949128 35949347 -166379000 + MLT1E1 LTR MaLR 424 654 0 987 195 39 78 chr4 35949350 35949657 -166378690 - LTR37A LTR ERV1 -86 340 46 880 132 8 0 chr4 35950717 35950846 -166377501 + AluSq SINE Alu 4 133 -180 22 0 0 0 chr4 35950846 35950868 -166377479 + AT_rich Low_complexity Low_complexity 1 22 0 1025 162 0 0 chr4 35951251 35951418 -166376929 + AluSq SINE Alu 137 303 -10 1445 241 94 54 chr4 35951673 35951794 -166376553 - MLT1E2 LTR MaLR -17 598 483 2190 72 0 0 chr4 35951794 35952114 -166376233 - AluY SINE Alu 0 325 6 1445 241 94 54 chr4 35952114 35952473 -166375874 - MLT1E2 LTR MaLR -132 483 111 29 78 0 0 chr4 35952940 35953004 -166375343 + AT_rich Low_complexity Low_complexity 1 64 0 484 167 0 0 chr4 35953600 35953678 -166374669 - Tigger1 DNA MER2_type -621 1797 1720 180 0 0 0 chr4 35953697 35953717 -166374630 + (TTTTA)n Simple_repeat Simple_repeat 3 22 0 18862 115 6 3 chr4 35953717 35958132 -166370215 - L1PA8 LINE L1 -23 6149 1728 1532 64 18 5 chr4 35958476 35958694 -166369653 - L1P LINE L1 -917 5229 5009 3401 74 7 0 chr4 35958694 35959143 -166369204 + L1PA7 LINE L1 5693 6153 -1 2125 169 7 7 chr4 35959765 35960168 -166368179 + MER57A LTR ERV1 1 403 0 21 36 0 0 chr4 35960429 35960457 -166367890 + AT_rich Low_complexity Low_complexity 1 28 0 855 222 0 18 chr4 35960852 35961023 -166367324 - Tigger2 DNA MER2_type -1 2717 2550 * 4731 179 17 4 chr4 35961013 35961858 -166366489 - Tigger2 DNA MER2_type -1862 856 1 203 156 0 0 chr4 35962416 35962448 -166365899 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 272 237 0 0 chr4 35962842 35962901 -166365446 + MLT1H LTR MaLR 80 138 -411 468 283 61 35 chr4 35963075 35963273 -166365074 + MLT1H LTR MaLR 347 549 0 22 0 0 0 chr4 35963574 35963596 -166364751 + AT_rich Low_complexity Low_complexity 1 22 0 210 136 0 0 chr4 35963795 35963839 -166364508 + (TA)n Simple_repeat Simple_repeat 2 45 0 1599 206 0 3 chr4 35963902 35964198 -166364149 - AluJb SINE Alu -17 295 1 2016 183 3 6 chr4 35964362 35964728 -166363619 - MLT1A1 LTR MaLR 0 365 1 2404 52 0 0 chr4 35965155 35965446 -166362901 - AluY SINE Alu -18 293 3 464 240 110 13 chr4 35965487 35965641 -166362706 - MER5B DNA MER1_type -9 169 1 228 259 0 0 chr4 35966425 35966483 -166361864 - L1MA9 LINE L1 -4 6308 6251 2162 265 46 51 chr4 35966572 35968044 -166360303 - L1ME1 LINE L1 -166 6069 4621 848 298 61 52 chr4 35968044 35968795 -166359552 - L1ME1 LINE L1 -3344 2871 2156 23 33 0 0 chr4 35969090 35969120 -166359227 + AT_rich Low_complexity Low_complexity 1 30 0 1293 310 24 15 chr4 35969422 35969887 -166358460 - LTR40a LTR ERVL -22 497 29 26 0 0 0 chr4 35970009 35970035 -166358312 + AT_rich Low_complexity Low_complexity 1 26 0 190 308 13 13 chr4 35970040 35970118 -166358229 - MIR SINE MIR -98 164 87 279 0 0 0 chr4 35970308 35970339 -166358008 + (TG)n Simple_repeat Simple_repeat 1 31 0 30 59 0 0 chr4 35970352 35970403 -166357944 + AT_rich Low_complexity Low_complexity 1 51 0 536 205 9 25 chr4 35970483 35970617 -166357730 - LTR40b LTR ERVL -2 463 323 234 0 0 0 chr4 35970641 35970667 -166357680 + (GA)n Simple_repeat Simple_repeat 2 27 0 198 220 22 22 chr4 35971610 35971701 -166356646 + (CATATA)n Simple_repeat Simple_repeat 3 93 0 501 181 64 0 chr4 35971716 35971810 -166356537 + MER4D LTR ERV1 1 100 -803 * 2471 205 117 9 chr4 35971798 35972369 -166355978 + MER4D LTR ERV1 271 903 0 2220 202 50 89 chr4 35972550 35973272 -166355075 - LTR8A LTR ERV1 0 727 34 185 62 0 31 chr4 35973365 35973397 -166354950 + (TTTTA)n Simple_repeat Simple_repeat 3 33 0 225 0 0 0 chr4 35974648 35974673 -166353674 + (CA)n Simple_repeat Simple_repeat 2 26 0 3356 166 64 19 chr4 35974728 35975062 -166353285 - L1PB3 LINE L1 -7 6147 5829 288 0 0 0 chr4 35975062 35975094 -166353253 + (TG)n Simple_repeat Simple_repeat 2 33 0 3356 166 64 19 chr4 35975094 35975434 -166352913 - L1PB3 LINE L1 -325 5829 5443 1286 276 46 78 chr4 35975702 35976333 -166352014 - MLT1E3 LTR MaLR -13 611 1 190 376 82 24 chr4 35978339 35978509 -166349838 + L2 LINE L2 2870 3049 -223 1068 309 36 20 chr4 35978817 35979209 -166349138 + LTR40a LTR ERVL 36 433 -86 * 1626 199 38 80 chr4 35979204 35979631 -166348716 + MSTB LTR MaLR 18 426 0 274 189 0 0 chr4 35979639 35979692 -166348655 + LTR40a LTR ERVL 448 500 -19 234 241 0 0 chr4 35979725 35979779 -166348568 - MIR SINE MIR -106 156 103 22 0 0 0 chr4 35980082 35980104 -166348243 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr4 35980438 35980469 -166347878 + AT_rich Low_complexity Low_complexity 1 31 0 24 32 0 0 chr4 35980967 35980998 -166347349 + AT_rich Low_complexity Low_complexity 1 31 0 881 243 71 30 chr4 35981338 35981605 -166346742 - MER93a LTR ERV1 -4 398 121 382 363 126 0 chr4 35981805 35982028 -166346319 - MIR SINE MIR -9 253 3 613 93 0 0 chr4 35982595 35982681 -166345666 + MLT2A2 LTR ERVL 1 86 -367 2927 108 12 0 chr4 35982757 35983165 -166345182 + MLT2A2 LTR ERVL 1 413 -40 303 191 0 0 chr4 35983168 35983231 -166345116 + (TATATG)n Simple_repeat Simple_repeat 6 68 0 238 105 18 18 chr4 35983266 35983323 -166345024 + (TA)n Simple_repeat Simple_repeat 2 58 0 277 118 0 20 chr4 35983326 35983377 -166344970 + MLT2A2 LTR ERVL 395 444 0 1980 143 45 34 chr4 35983620 35983978 -166344369 - THE1B LTR MaLR -2 362 1 201 176 0 44 chr4 35984151 35984219 -166344128 + GA-rich Low_complexity Low_complexity 4 68 0 238 308 19 0 chr4 35984512 35984619 -166343728 + (CATA)n Simple_repeat Simple_repeat 4 112 0 5038 96 16 9 chr4 35985503 35986669 -166341678 + L1P3 LINE L1 4572 5741 -413 261 299 117 15 chr4 35988410 35988547 -166339800 + MIR SINE MIR 102 252 -10 22 0 0 0 chr4 35989675 35989697 -166338650 + AT_rich Low_complexity Low_complexity 1 22 0 268 337 121 25 chr4 35989735 35989934 -166338413 + MIR SINE MIR 45 262 0 289 362 26 0 chr4 35990243 35990359 -166337988 - L2 LINE L2 -18 3295 3177 270 231 112 33 chr4 35990802 35990892 -166337455 + MLT1I LTR MaLR 308 450 0 542 354 41 73 chr4 35990978 35991008 -166337339 - L2 LINE L2 -245 3068 3039 3142 118 14 27 chr4 35991008 35991526 -166336821 + MER9 LTR ERVK 1 511 0 542 354 41 73 chr4 35991526 35991612 -166336735 - L2 LINE L2 -274 3039 2952 2735 29 0 0 chr4 35991612 35991926 -166336421 + AluYb8 SINE Alu 1 314 -4 542 354 41 73 chr4 35991926 35992314 -166336033 - L2 LINE L2 -361 2952 2577 3132 178 22 7 chr4 35993170 35993345 -166335002 - L1MB1 LINE L1 0 6168 5994 5788 236 111 19 chr4 35993345 35994839 -166333508 - L1ME1 LINE L1 -174 6228 4872 1633 183 15 51 chr4 35994839 35995038 -166333309 + THE1C LTR MaLR 1 181 -194 228 35 0 0 chr4 35995038 35995067 -166333280 + (TC)n Simple_repeat Simple_repeat 1 29 0 1633 183 15 51 chr4 35995067 35995256 -166333091 + THE1C LTR MaLR 181 375 0 5788 236 111 19 chr4 35995256 35995760 -166332587 - L1ME1 LINE L1 -1530 4872 4416 1313 181 96 34 chr4 35995760 35996113 -166332234 - THE1C LTR MaLR 0 375 1 5788 236 111 19 chr4 35996113 35996414 -166331933 - L1ME1 LINE L1 -1986 4416 3707 1628 128 0 12 chr4 35996418 35996668 -166331679 + THE1C LTR MaLR 129 375 0 2099 258 78 47 chr4 35996678 35998625 -166329722 - L1ME1 LINE L1 -3552 2830 890 1923 133 19 13 chr4 35998625 35998933 -166329414 + AluSg SINE Alu 1 310 0 2099 258 78 47 chr4 35998933 35999032 -166329315 - L1ME1 LINE L1 -5492 890 796 468 402 21 12 chr4 35999245 35999663 -166328684 - L1M3c LINE L1 -5719 422 1 21 0 0 0 chr4 35999833 35999854 -166328493 + AT_rich Low_complexity Low_complexity 1 21 0 28 29 0 0 chr4 36000416 36000451 -166327896 + AT_rich Low_complexity Low_complexity 1 35 0 270 260 52 0 chr4 36000693 36000770 -166327577 + MIR SINE MIR 163 243 -19 1985 138 41 39 chr4 36000804 36001167 -166327180 - THE1B LTR MaLR 0 364 1 9803 130 49 0 chr4 36001172 36002672 -166325675 - THE1B-int LTR MaLR -6 1574 1 1991 152 11 37 chr4 36002672 36003046 -166325301 - THE1B LTR MaLR 0 364 1 13447 170 24 3 chr4 36003445 36005807 -166322540 - Tigger1 DNA MER2_type 0 2418 8 1858 165 10 0 chr4 36005808 36006118 -166322229 + AluSx SINE Alu 1 347 0 210 59 59 0 chr4 36006118 36006152 -166322195 + A-rich Low_complexity Low_complexity 2 180 0 194 355 136 26 chr4 36006278 36006433 -166321914 - MIR3 SINE MIR -3 205 34 202 211 123 0 chr4 36006646 36006703 -166321644 + L2 LINE L2 3248 3311 -2 1949 142 3 22 chr4 36006861 36007177 -166321170 - AluSx SINE Alu 0 312 3 216 266 16 16 chr4 36007344 36007408 -166320939 + MIR3 SINE MIR 138 201 -7 4637 157 25 5 chr4 36008894 36009876 -166318471 - L1M2 LINE L1 -743 5403 4468 364 203 25 0 chr4 36009872 36009951 -166318396 + L1MA8 LINE L1 5508 5588 -712 * 1953 154 3 3 chr4 36009953 36010428 -166317919 + AluSx SINE Alu 1 475 0 1386 178 30 16 chr4 36010468 36010771 -166317576 + L1MA5 LINE L1 5994 6300 0 3216 161 8 75 chr4 36010783 36011042 -166317305 + L1MA8 LINE L1 5602 5877 -414 2229 112 0 0 chr4 36011042 36011337 -166317010 + AluSx SINE Alu 1 295 -17 3216 161 8 75 chr4 36011337 36011793 -166316554 + L1MA8 LINE L1 5877 6269 -22 1270 214 37 41 chr4 36013010 36013304 -166315043 - AluJo SINE Alu -19 293 1 249 33 0 0 chr4 36014982 36015012 -166313335 + (GAAAA)n Simple_repeat Simple_repeat 1 30 0 3842 129 51 2 chr4 36016429 36017034 -166311313 + MER41B LTR ERV1 1 635 0 21 0 0 0 chr4 36017319 36017340 -166311007 + AT_rich Low_complexity Low_complexity 1 21 0 367 329 81 39 chr4 36018458 36018817 -166309530 + L1ME3A LINE L1 810 1183 -5213 345 273 141 25 chr4 36018882 36019450 -166308897 + L1ME3A LINE L1 4172 4805 -1410 700 244 24 28 chr4 36019478 36019691 -166308656 - MER20 DNA MER1_type -4 215 4 302 316 42 14 chr4 36019693 36019905 -166308442 + L1ME3A LINE L1 5722 5939 -300 653 187 0 50 chr4 36020317 36020456 -166307891 + FLAM_C SINE Alu 1 132 -11 365 290 126 38 chr4 36020511 36020749 -166307598 - MIR SINE MIR -1 261 3 364 348 51 0 chr4 36020968 36021106 -166307241 - MIR SINE MIR -72 190 46 392 148 58 0 chr4 36021287 36021545 -166306802 + (TA)n Simple_repeat Simple_repeat 1 273 0 220 68 23 23 chr4 36021576 36021620 -166306727 + (TA)n Simple_repeat Simple_repeat 2 45 0 360 116 87 14 chr4 36021625 36021694 -166306653 - MLT2A2 LTR ERVL -47 406 333 2266 141 29 16 chr4 36021725 36022095 -166306252 - MLT2A2 LTR ERVL -81 372 5 40019 93 8 2 chr4 36022097 36027429 -166300918 - HERVL-A2-A2 LTR ERVL -172 5482 119 2336 71 0 0 chr4 36027434 36027751 -166300596 + AluY SINE Alu 1 317 0 933 145 101 0 chr4 36027761 36027920 -166300427 + AluSg SINE Alu 6 180 -130 2860 105 13 3 chr4 36027927 36028316 -166300031 - MLT2A2 LTR ERVL -60 393 1 2977 141 2 52 chr4 36028434 36028987 -166299360 + L1MA4A LINE L1 5391 5915 -388 2906 146 66 18 chr4 36028992 36029569 -166298778 + LTR38B LTR ERV1 8 611 0 961 39 0 23 chr4 36029576 36029706 -166298641 - L1PA5 LINE L1 0 6154 6028 619 213 46 14 chr4 36029706 36029990 -166298357 + L1MA4A LINE L1 5927 6280 -23 29 47 0 0 chr4 36029997 36030040 -166298307 + AT_rich Low_complexity Low_complexity 1 43 0 2815 85 3 0 chr4 36031454 36031830 -166296517 + MER51B LTR ERV1 1 377 0 4904 75 46 3 chr4 36032077 36032769 -166295578 + LTR30 LTR ERV1 1 722 0 513 228 55 0 chr4 36032772 36032899 -166295448 - MER70A LTR ERVL 0 472 339 5799 52 8 0 chr4 36032931 36033641 -166294706 + HERV17 LTR ERV1 5304 6019 -2607 283 77 0 0 chr4 36033634 36033673 -166294674 + HERV17 LTR ERV1 7510 7548 -1078 * 2334 65 3 0 chr4 36033663 36033953 -166294394 + HERV17 LTR ERV1 8335 8625 -1 6033 76 1 14 chr4 36033954 36034744 -166293603 + LTR17 LTR ERV1 1 780 0 1211 239 13 0 chr4 36034744 36034983 -166293364 - MER70A LTR ERVL -130 342 101 454 237 15 69 chr4 36035004 36035135 -166293212 - MER70B LTR ERVL -443 135 12 25 0 0 0 chr4 36035419 36035444 -166292903 + AT_rich Low_complexity Low_complexity 1 25 0 26 0 0 0 chr4 36035549 36035575 -166292772 + AT_rich Low_complexity Low_complexity 1 26 0 6576 88 0 0 chr4 36035575 36036628 -166291719 - L1PA7 LINE L1 -3 6151 5101 2906 108 2 0 chr4 36036629 36037057 -166291290 + L1PA7 LINE L1 4678 5106 -1040 771 234 115 23 chr4 36038316 36038620 -166289727 - LTR16B LTR ERVL -13 451 120 2387 126 58 23 chr4 36038843 36039278 -166289069 - LTR7 LTR ERV1 0 450 1 400 282 47 54 chr4 36039802 36039951 -166288396 + L2 LINE L2 2897 3044 -269 309 357 30 8 chr4 36040208 36040443 -166287904 - L1ME LINE L1 -547 5574 5335 21 57 0 0 chr4 36040479 36040514 -166287833 + AT_rich Low_complexity Low_complexity 1 35 0 794 265 12 74 chr4 36041156 36041480 -166286867 + Charlie1a DNA MER1_type 1 304 -1151 1093 103 6 0 chr4 36041484 36041640 -166286707 + AluY SINE Alu 123 279 -32 183 42 0 0 chr4 36041643 36041667 -166286680 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1213 240 163 3 chr4 36041676 36042039 -166286308 + Charlie1a DNA MER1_type 305 725 -730 1118 152 34 5 chr4 36042045 36042249 -166286098 - MER41B LTR ERV1 0 635 426 326 307 50 10 chr4 36042828 36042929 -166285418 - L2 LINE L2 -14 3299 3195 21 0 0 0 chr4 36043597 36043618 -166284729 + AT_rich Low_complexity Low_complexity 1 21 0 1836 66 4 0 chr4 36044006 36044234 -166284113 - AluY SINE Alu -20 291 63 265 385 65 10 chr4 36044598 36044798 -166283549 + MIR SINE MIR 46 256 -6 2123 118 3 0 chr4 36045702 36046030 -166282317 + AluSq SINE Alu 1 329 0 526 318 46 5 chr4 36046153 36046348 -166281999 + MIR SINE MIR 56 258 -4 198 0 0 0 chr4 36047090 36047112 -166281235 + (T)n Simple_repeat Simple_repeat 1 22 0 553 239 38 68 chr4 36048108 36048401 -166279946 + L1ME2 LINE L1 4871 5154 -992 718 164 23 23 chr4 36048784 36048912 -166279435 + FLAM_C SINE Alu 6 133 -10 201 255 0 0 chr4 36048991 36049038 -166279309 + (TAG)n Simple_repeat Simple_repeat 3 49 0 2195 99 7 7 chr4 36049168 36049471 -166278876 - AluSc SINE Alu -6 303 1 1350 112 0 54 chr4 36049471 36049694 -166278653 - MER4D LTR ERV1 -692 211 1 229 242 71 50 chr4 36049733 36049832 -166278515 - MER91C DNA MER1_type -36 104 4 1301 96 0 28 chr4 36050033 36050210 -166278137 - AluY SINE Alu -137 174 3 8437 50 20 1 chr4 36050498 36051549 -166276798 - MER11C LTR ERVK 0 1071 1 2319 109 0 3 chr4 36052158 36052470 -166275877 - AluY SINE Alu 0 311 1 8719 237 28 14 chr4 36052644 36055117 -166273230 + L1 LINE L1 2202 4707 -1439 202 284 0 45 chr4 36055948 36056015 -166272332 + MIR SINE MIR 164 227 -35 1987 96 17 7 chr4 36056050 36056341 -166272006 + AluSp SINE Alu 1 294 -19 471 113 0 0 chr4 36056343 36056414 -166271933 + (TA)n Simple_repeat Simple_repeat 1 71 0 24 32 0 0 chr4 36057449 36057480 -166270867 + AT_rich Low_complexity Low_complexity 1 31 0 21 71 0 0 chr4 36059062 36059104 -166269243 + AT_rich Low_complexity Low_complexity 1 42 0 975 264 61 23 chr4 36059307 36059765 -166268582 + L1ME2 LINE L1 5210 5695 -471 1622 187 30 41 chr4 36059799 36059894 -166268453 + MLT1A1 LTR MaLR 1 96 -269 1404 215 96 11 chr4 36059894 36060257 -166268090 - MSTD LTR MaLR -2 394 1 1622 187 30 41 chr4 36060257 36060530 -166267817 + MLT1A1 LTR MaLR 96 365 0 559 244 118 79 chr4 36060537 36060877 -166267470 + L1ME2 LINE L1 5762 6114 -50 1866 261 90 30 chr4 36061026 36061300 -166267047 - L1M4 LINE L1 -2672 3474 3218 2411 87 0 0 chr4 36061300 36061609 -166266738 - AluY SINE Alu -2 309 1 1866 261 90 30 chr4 36061609 36061637 -166266710 - L1M4 LINE L1 -2928 3218 3193 436 193 0 0 chr4 36061637 36061720 -166266627 - L1PB4 LINE L1 0 6156 6074 1866 261 90 30 chr4 36061720 36062356 -166265991 - L1M4 LINE L1 -2953 3193 2463 973 24 16 0 chr4 36062356 36062480 -166265867 + (TTTC)n Simple_repeat Simple_repeat 3 128 0 1866 261 90 30 chr4 36062480 36062594 -166265753 - L1M4 LINE L1 -3683 2463 2357 322 175 103 19 chr4 36062600 36062704 -166265643 - FLAM_A SINE Alu -19 114 4 353 200 0 21 chr4 36062744 36062839 -166265508 - L1M4 LINE L1 -3772 2374 2282 22 0 0 0 chr4 36063311 36063333 -166265014 + AT_rich Low_complexity Low_complexity 1 22 0 5616 205 61 19 chr4 36063341 36063461 -166264886 + L1MC3 LINE L1 6399 6513 -1272 2215 114 3 0 chr4 36063461 36063767 -166264580 + AluSp SINE Alu 3 309 -4 5616 205 61 19 chr4 36063767 36064976 -166263371 + L1MC3 LINE L1 6513 7783 -2 234 0 0 0 chr4 36065572 36065598 -166262749 + (CA)n Simple_repeat Simple_repeat 2 27 0 2079 217 25 70 chr4 36065672 36066244 -166262103 + MLT2B3 LTR ERVL 1 546 -8 221 276 17 0 chr4 36066537 36066595 -166261752 + L2 LINE L2 3255 3313 0 1197 125 65 0 chr4 36067973 36068157 -166260190 + THE1C LTR MaLR 180 375 0 374 347 20 7 chr4 36068351 36068501 -166259846 - L2 LINE L2 0 3313 3162 990 270 19 4 chr4 36068513 36068780 -166259567 + MER69 DNA AcHobo 2 272 -2254 227 183 0 42 chr4 36068849 36068920 -166259427 + A-rich Low_complexity Low_complexity 3 70 0 278 197 0 0 chr4 36068938 36069004 -166259343 + (TA)n Simple_repeat Simple_repeat 2 67 0 633 316 111 20 chr4 36069063 36069614 -166258733 + L1ME3A LINE L1 5297 5897 -273 2158 69 4 7 chr4 36069784 36070059 -166258288 + AluY SINE Alu 21 294 -17 258 267 73 30 chr4 36070067 36070206 -166258141 - L1P LINE L1 -725 5429 5285 22 35 0 0 chr4 36070265 36070294 -166258053 + AT_rich Low_complexity Low_complexity 1 29 0 211 346 12 0 chr4 36070531 36070612 -166257735 + (CATATA)n Simple_repeat Simple_repeat 2 83 0 320 341 23 8 chr4 36070673 36070805 -166257542 + MIR3 SINE MIR 39 172 -36 969 225 47 55 chr4 36071464 36071868 -166256479 + MLT1A2 LTR MaLR 1 372 -2 1674 231 119 35 chr4 36071899 36072379 -166255968 - MLT2B1 LTR ERVL 0 520 1 1091 274 65 21 chr4 36072648 36073031 -166255316 + MER110 LTR ERV1 61 460 -31 1614 95 0 0 chr4 36073919 36074141 -166254206 - L1PA7 LINE L1 -8 6146 5925 25 0 0 0 chr4 36074372 36074397 -166253950 + AT_rich Low_complexity Low_complexity 1 25 0 238 270 99 45 chr4 36074496 36074607 -166253740 - MIR SINE MIR -115 147 31 243 0 0 0 chr4 36075724 36075751 -166252596 + (TG)n Simple_repeat Simple_repeat 2 28 0 255 386 0 0 chr4 36076336 36076406 -166251941 - L2 LINE L2 -53 3219 3150 1867 152 27 10 chr4 36076474 36076771 -166251576 + AluSx SINE Alu 1 302 -10 1466 194 35 46 chr4 36077864 36078231 -166250116 + MLT1A1 LTR MaLR 1 363 -2 333 263 120 15 chr4 36078961 36079094 -166249253 - MIR SINE MIR -6 256 110 286 100 0 0 chr4 36079198 36079238 -166249109 + L1MA8 LINE L1 6040 6079 -212 247 308 69 26 chr4 36079292 36079533 -166248814 + L1M4 LINE L1 3361 3614 -2532 540 283 89 61 chr4 36079768 36080642 -166247705 + L1M4 LINE L1 3818 4716 -1430 222 37 0 0 chr4 36080842 36080869 -166247478 + (CTA)n Simple_repeat Simple_repeat 1 27 0 405 308 8 15 chr4 36080870 36081000 -166247347 - MIR SINE MIR -8 254 126 207 325 26 13 chr4 36082182 36082259 -166246088 + MIR SINE MIR 45 122 -86 360 256 24 0 chr4 36082315 36082397 -166245950 + L2 LINE L2 2711 2794 -520 2340 164 5 5 chr4 36082551 36082948 -166245399 + MER31A LTR ERV1 6 402 -83 26 64 0 0 chr4 36083050 36083097 -166245250 + AT_rich Low_complexity Low_complexity 1 47 0 1073 269 67 111 chr4 36083845 36084424 -166243923 - L2 LINE L2 -604 2710 2157 211 203 54 81 chr4 36084565 36084639 -166243708 + MIR SINE MIR 49 120 -142 42 48 0 0 chr4 36084705 36084768 -166243579 + AT_rich Low_complexity Low_complexity 1 63 0 229 172 17 17 chr4 36085080 36085138 -166243209 + (TA)n Simple_repeat Simple_repeat 1 58 0 22 56 0 0 chr4 36085673 36085709 -166242638 + AT_rich Low_complexity Low_complexity 1 36 0 278 176 68 27 chr4 36085754 36085828 -166242519 + MADE1 DNA Mariner 1 77 -3 242 321 38 9 chr4 36086355 36086461 -166241886 + L1ME LINE L1 5747 5855 -266 284 149 0 0 chr4 36087234 36087281 -166241066 + U7 snRNA snRNA 6 52 -11 339 326 11 38 chr4 36087321 36087505 -166240842 + MIR SINE MIR 48 226 -36 772 181 0 8 chr4 36089410 36089537 -166238810 + FLAM_C SINE Alu 1 126 -17 183 326 0 0 chr4 36089610 36089656 -166238691 + MIR SINE MIR 47 92 -170 467 316 64 47 chr4 36089851 36090148 -166238199 - MLT1I LTR MaLR -2 407 106 207 0 0 0 chr4 36090722 36090745 -166237602 + (T)n Simple_repeat Simple_repeat 1 23 0 268 385 53 18 chr4 36092675 36092901 -166235446 + MIR SINE MIR 28 261 -1 25 51 0 0 chr4 36092901 36092940 -166235407 + AT_rich Low_complexity Low_complexity 1 39 0 218 186 0 0 chr4 36094622 36094665 -166233682 + (ATG)n Simple_repeat Simple_repeat 3 45 0 180 0 0 0 chr4 36094775 36094795 -166233552 + (CA)n Simple_repeat Simple_repeat 2 21 0 282 398 46 15 chr4 36094963 36095222 -166233125 - L3 LINE CR1 -328 1249 983 2179 140 82 31 chr4 36095594 36096007 -166232340 + Tigger2a DNA MER2_type 1 434 0 1877 162 7 3 chr4 36096248 36096550 -166231797 - AluSx SINE Alu -9 303 1 24 0 0 0 chr4 36096741 36096765 -166231582 + AT_rich Low_complexity Low_complexity 1 24 0 28 71 0 0 chr4 36097142 36097198 -166231149 + AT_rich Low_complexity Low_complexity 1 56 0 2442 109 17 6 chr4 36097578 36097936 -166230411 - THE1B LTR MaLR -2 362 1 300 211 0 0 chr4 36099623 36099694 -166228653 + (CATA)n Simple_repeat Simple_repeat 4 74 0 1057 240 111 27 chr4 36099720 36100207 -166228140 - L1M4 LINE L1 -893 5253 4726 437 229 139 19 chr4 36100379 36100541 -166227806 + L1M1 LINE L1 2857 3118 -4612 207 0 0 0 chr4 36100556 36100579 -166227768 + (TA)n Simple_repeat Simple_repeat 1 23 0 1755 256 111 46 chr4 36100593 36101993 -166226354 + L1M1 LINE L1 3907 5397 -2168 1379 268 97 23 chr4 36102046 36102767 -166225580 + L1ME1 LINE L1 5394 6176 -2 395 342 9 22 chr4 36102789 36103017 -166225330 + MLT1L LTR MaLR 3 227 -388 338 266 55 73 chr4 36103222 36103440 -166224907 + MER112 DNA MER1_type 38 251 -9 330 332 154 4 chr4 36104858 36105105 -166223242 - L2 LINE L2 -985 2329 2046 31 0 0 0 chr4 36106321 36106352 -166221995 + AT_rich Low_complexity Low_complexity 1 31 0 1904 306 145 38 chr4 36106358 36107530 -166220817 - L2 LINE L2 -349 2965 1669 2104 234 43 16 chr4 36107534 36108021 -166220326 - MLT1D LTR MaLR 0 505 6 557 348 13 4 chr4 36108024 36108254 -166220093 - L2 LINE L2 -1643 1671 1440 1643 222 55 26 chr4 36108587 36108903 -166219444 + MSTD LTR MaLR 1 331 -65 1610 134 90 4 chr4 36108903 36109180 -166219167 - AluSx SINE Alu -11 301 1 1643 222 55 26 chr4 36109180 36109242 -166219105 + MSTD LTR MaLR 331 390 -6 313 333 31 0 chr4 36109563 36109692 -166218655 + L2 LINE L2 1539 1671 -1643 268 247 0 27 chr4 36109717 36109790 -166218557 - MSTD LTR MaLR -193 203 133 2077 138 3 0 chr4 36109869 36110181 -166218166 - AluSp SINE Alu 0 313 1 268 250 25 25 chr4 36110999 36111079 -166217268 - MIR SINE MIR -120 142 63 22 0 0 0 chr4 36112378 36112400 -166215947 + AT_rich Low_complexity Low_complexity 1 22 0 452 364 57 28 chr4 36112439 36112791 -166215556 + L1MEc LINE L1 72 433 -5963 558 254 156 77 chr4 36113101 36113620 -166214727 - MER34B LTR ERV1 -5 560 1 2287 115 27 21 chr4 36114075 36114448 -166213899 + THE1C LTR MaLR 1 375 0 324 296 92 46 chr4 36114450 36114646 -166213701 - L1M4 LINE L1 -929 5217 5013 2180 217 30 16 chr4 36114713 36115211 -166213136 - MLT1D LTR MaLR 0 505 1 251 297 78 15 chr4 36115462 36115731 -166212616 - L1M4 LINE L1 -1529 4617 4332 1085 318 59 36 chr4 36115772 36116522 -166211825 - L2 LINE L2 -11 3302 2531 400 349 88 87 chr4 36116566 36116638 -166211709 - L1MEd LINE L1 -5339 780 710 2299 102 3 6 chr4 36116638 36116951 -166211396 - AluSp SINE Alu -1 312 1 400 349 88 87 chr4 36116951 36117614 -166210733 - L1MEd LINE L1 -5409 710 44 531 295 35 10 chr4 36118989 36119189 -166209158 + MER63A DNA MER1_type 3 207 -3 250 236 24 32 chr4 36119521 36119644 -166208703 + (CATATA)n Simple_repeat Simple_repeat 3 124 0 1980 123 3 0 chr4 36119963 36120269 -166208078 + AluSq SINE Alu 1 307 0 23 0 0 0 chr4 36120396 36120419 -166207928 + AT_rich Low_complexity Low_complexity 1 23 0 319 231 63 47 chr4 36120619 36120776 -166207571 + L1MC4 LINE L1 6438 6597 -1398 339 25 0 0 chr4 36120788 36120828 -166207519 + (TAGA)n Simple_repeat Simple_repeat 3 42 0 25 0 0 0 chr4 36121101 36121126 -166207221 + AT_rich Low_complexity Low_complexity 1 25 0 219 383 66 16 chr4 36121240 36121423 -166206924 + MIR SINE MIR 4 195 -67 639 364 80 10 chr4 36121531 36121918 -166206429 - L3 LINE CR1 -148 1429 1016 301 353 6 19 chr4 36122436 36122592 -166205755 - L3 LINE CR1 -457 1120 967 261 384 0 8 chr4 36122818 36122943 -166205404 - L2 LINE L2 -1 3312 3189 2734 164 21 41 chr4 36123260 36123840 -166204507 - L1MB3 LINE L1 -1 6182 5615 2216 118 0 0 chr4 36124389 36124694 -166203653 + AluSg SINE Alu 1 305 -5 576 312 114 41 chr4 36124910 36125394 -166202953 + L2 LINE L2 2158 2676 -638 291 289 110 66 chr4 36125709 36125982 -166202365 + MLT1L LTR MaLR 186 470 -145 1228 263 64 72 chr4 36126047 36126534 -166201813 - MLT1H LTR MaLR 0 549 67 381 58 0 0 chr4 36127016 36127068 -166201279 + (CA)n Simple_repeat Simple_repeat 2 53 0 217 215 13 13 chr4 36127129 36127208 -166201139 + (TA)n Simple_repeat Simple_repeat 1 79 0 23 78 0 0 chr4 36128335 36128386 -166199961 + AT_rich Low_complexity Low_complexity 1 51 0 237 65 0 0 chr4 36128937 36128968 -166199379 + (TG)n Simple_repeat Simple_repeat 2 32 0 210 231 0 19 chr4 36128979 36129031 -166199316 + GA-rich Low_complexity Low_complexity 2 52 0 210 208 0 0 chr4 36129178 36129231 -166199116 + (CATA)n Simple_repeat Simple_repeat 1 53 0 446 319 45 39 chr4 36130321 36130599 -166197748 - MLT1I LTR MaLR -14 395 113 1316 212 43 58 chr4 36130599 36130749 -166197598 + MLT1B LTR MaLR 1 152 -238 2156 61 43 4 chr4 36130749 36131029 -166197318 - AluY SINE Alu -20 291 1 1316 212 43 58 chr4 36131029 36131274 -166197073 + MLT1B LTR MaLR 152 390 0 446 319 45 39 chr4 36131274 36131330 -166197017 - MLT1I LTR MaLR -296 113 59 279 271 93 28 chr4 36133377 36133484 -166194863 - L3b LINE CR1 -264 1319 1206 214 279 81 54 chr4 36134882 36134993 -166193354 - L2 LINE L2 -14 3258 3145 244 218 40 97 chr4 36135483 36135607 -166192740 + MIR3 SINE MIR 86 202 -6 3390 135 138 24 chr4 36139433 36140138 -166188209 + LTR1 LTR ERV1 1 785 0 907 241 34 8 chr4 36140300 36140565 -166187782 - LTR37B LTR ERV1 -24 444 173 7477 22 5 1 chr4 36141259 36142255 -166186092 + L1PA3 LINE L1 5173 6155 0 32 67 0 0 chr4 36143771 36143831 -166184516 + AT_rich Low_complexity Low_complexity 1 60 0 329 115 148 0 chr4 36144995 36145056 -166183291 + MADE1 DNA Mariner 11 80 0 185 292 67 33 chr4 36145100 36145220 -166183127 + MIR SINE MIR 125 248 -14 283 378 37 7 chr4 36145342 36145477 -166182870 + MLT1K LTR MaLR 100 238 -350 1766 260 41 34 chr4 36145587 36146170 -166182177 - MER63C DNA MER1_type -130 930 340 2728 13 0 0 chr4 36146170 36146471 -166181876 - AluYa5 SINE Alu -10 301 1 1766 260 41 34 chr4 36146471 36146541 -166181806 - MER63C DNA MER1_type -720 340 272 23 0 0 0 chr4 36198009 36198032 -166130315 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr4 36198098 36198121 -166130226 + AT_rich Low_complexity Low_complexity 1 23 0 3113 121 34 38 chr4 36201503 36202058 -166126289 - Tigger3b DNA MER2_type 0 1231 679 307 308 55 59 chr4 36202728 36202965 -166125382 - MIR SINE MIR -9 253 18 22 0 0 0 chr4 36203050 36203072 -166125275 + AT_rich Low_complexity Low_complexity 1 22 0 717 278 79 8 chr4 36203086 36203327 -166125020 - L1MC4a LINE L1 -1054 6754 6497 223 273 91 13 chr4 36204406 36204483 -166123864 + MIR SINE MIR 28 110 -152 412 272 34 92 chr4 36204485 36204691 -166123656 - LTR16A LTR ERVL -241 209 16 747 308 40 16 chr4 36204892 36205142 -166123205 + MIR SINE MIR 7 262 0 1969 96 48 0 chr4 36205723 36206024 -166122323 + AluY SINE Alu 1 314 0 557 251 181 15 chr4 36206725 36206924 -166121423 + AluJb SINE Alu 25 256 -56 897 303 119 11 chr4 36207854 36208233 -166120114 + LTR16A LTR ERVL 23 442 -8 3512 124 50 5 chr4 36208947 36209552 -166118795 - Tigger3b DNA MER2_type -24 1207 576 1279 115 0 1 chr4 36209552 36209812 -166118535 + AluSg1 SINE Alu 1 295 -17 1715 125 39 32 chr4 36209812 36210123 -166118224 - Tigger3b DNA MER2_type -653 578 266 2511 90 8 6 chr4 36210123 36210477 -166117870 - THE1A LTR MaLR 0 355 1 2669 84 3 3 chr4 36210897 36211252 -166117095 - THE1A LTR MaLR 0 355 1 5249 162 13 45 chr4 36211252 36212306 -166116041 - THE1A-int LTR MaLR 0 1580 560 2618 86 11 0 chr4 36213356 36213707 -166114640 + THE1A LTR MaLR 1 355 0 4650 134 12 25 chr4 36213707 36214512 -166113835 + THE1A-int LTR MaLR 1 795 -785 22 70 0 0 chr4 36215356 36215399 -166112948 + AT_rich Low_complexity Low_complexity 1 43 0 2318 95 7 0 chr4 36215403 36215708 -166112639 + AluY SINE Alu 1 307 -4 1087 137 22 0 chr4 36216555 36216737 -166111610 - L1MA2 LINE L1 0 6304 6119 1651 176 0 4 chr4 36217075 36217348 -166110999 - AluSx SINE Alu -39 273 2 21 0 0 0 chr4 36217609 36217630 -166110717 + AT_rich Low_complexity Low_complexity 1 21 0 220 375 70 8 chr4 36218429 36218557 -166109790 - L2 LINE L2 0 3313 3178 236 347 18 42 chr4 36218982 36219149 -166109198 + L2 LINE L2 2185 2347 -967 186 43 0 0 chr4 36219151 36219174 -166109173 + (TAAAA)n Simple_repeat Simple_repeat 3 25 0 2259 109 142 8 chr4 36219266 36219661 -166108686 + LTR7 LTR ERV1 1 448 -2 189 178 0 0 chr4 36219691 36219736 -166108611 + CT-rich Low_complexity Low_complexity 1 45 0 486 33 0 0 chr4 36219736 36219796 -166108551 + (TG)n Simple_repeat Simple_repeat 1 60 0 22 0 0 0 chr4 36219942 36219964 -166108383 + AT_rich Low_complexity Low_complexity 1 22 0 236 267 23 35 chr4 36221269 36221355 -166106992 + GA-rich Low_complexity Low_complexity 4 88 0 3871 134 45 97 chr4 36222911 36223884 -166104463 + Tigger3b DNA MER2_type 10 932 -299 392 330 57 62 chr4 36224053 36224075 -166104272 - MIR SINE MIR -30 232 211 2123 73 0 0 chr4 36224075 36224336 -166104011 - AluY SINE Alu -50 261 1 392 330 57 62 chr4 36224336 36224540 -166103807 - MIR SINE MIR -51 211 7 386 213 53 0 chr4 36224650 36224725 -166103622 - Tigger5 DNA MER2_type -2244 79 1 506 272 179 0 chr4 36224725 36224909 -166103438 - L2 LINE L2 -431 2883 2667 506 133 11 0 chr4 36225949 36226039 -166102308 + CT-rich Low_complexity Low_complexity 4 94 0 575 305 62 54 chr4 36226107 36226675 -166101672 - L1MEc LINE L1 -4786 1797 1193 281 309 57 16 chr4 36228755 36228878 -166099469 - MIR SINE MIR -102 160 33 5304 126 22 13 chr4 36229048 36230005 -166098342 - L1PA13 LINE L1 0 6163 5174 5071 190 15 2 chr4 36230105 36231109 -166097238 - L1PA13 LINE L1 -1386 4760 3744 2519 50 0 0 chr4 36232674 36232972 -166095375 - AluY SINE Alu -13 298 1 213 372 29 29 chr4 36233088 36233260 -166095087 + L2 LINE L2 2478 2649 -665 821 298 103 16 chr4 36233345 36233657 -166094690 - LTR16A LTR ERVL 0 450 112 1811 317 63 43 chr4 36234112 36235074 -166093273 - HERV16 LTR ERVL -3516 1480 499 1082 263 52 44 chr4 36235509 36235966 -166092381 + LTR40a LTR ERVL 59 519 0 422 181 21 0 chr4 36236307 36236401 -166091946 + CT-rich Low_complexity Low_complexity 3 98 0 1315 116 20 15 chr4 36238277 36238475 -166089872 - AluSg/x SINE Alu -19 293 95 2727 287 72 6 chr4 36238717 36239180 -166089167 + MER50 LTR ERV1 1 521 -213 1814 109 0 30 chr4 36239180 36239445 -166088902 + AluSc SINE Alu 1 257 -52 2727 287 72 6 chr4 36239445 36239637 -166088710 + MER50 LTR ERV1 521 699 -35 242 319 11 11 chr4 36239670 36239764 -166088583 + MIR3 SINE MIR 76 169 -39 555 260 83 28 chr4 36239933 36240114 -166088233 - MIR SINE MIR 0 262 72 189 107 0 0 chr4 36241267 36241295 -166087052 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 2108 113 10 13 chr4 36241301 36241602 -166086745 + AluSq SINE Alu 3 302 -11 3917 195 25 7 chr4 36243040 36243885 -166084462 - L1MB2 LINE L1 -2 6169 5310 2291 99 0 10 chr4 36244190 36244513 -166083834 - AluSg SINE Alu 0 310 1 426 319 52 47 chr4 36245668 36246204 -166082143 + L1ME LINE L1 279 817 -5579 402 340 25 0 chr4 36246264 36246508 -166081839 + L1ME LINE L1 4010 4259 -1956 248 213 27 53 chr4 36246556 36246631 -166081716 - LTR16A1 LTR ERVL -6 451 379 304 282 26 60 chr4 36246789 36246906 -166081441 - LTR16A LTR ERVL -278 172 60 2633 261 37 21 chr4 36246964 36248185 -166080162 + L1ME LINE L1 4299 5535 -696 558 218 98 60 chr4 36248197 36248431 -166079916 + MER5C DNA MER1_type 82 324 0 210 261 217 26 chr4 36250177 36250292 -166078055 + MIR SINE MIR 126 262 0 949 211 5 140 chr4 36250584 36250742 -166077605 + MLT1A1 LTR MaLR 1 179 -186 1244 212 3 39 chr4 36250742 36251048 -166077299 + AluJb SINE Alu 1 295 -7 949 211 5 140 chr4 36251048 36251311 -166077036 + MLT1A1 LTR MaLR 179 365 0 306 67 0 0 chr4 36251399 36251444 -166076903 + (CA)n Simple_repeat Simple_repeat 2 46 0 262 331 34 47 chr4 36251605 36251753 -166076594 + MIR SINE MIR 87 232 -30 300 353 132 24 chr4 36252297 36252677 -166075670 - L2 LINE L2 -4 3309 2889 313 246 0 0 chr4 36253212 36253273 -166075074 - AluJ/FRAM SINE Alu -9 293 233 26 30 0 0 chr4 36253808 36253841 -166074506 + AT_rich Low_complexity Low_complexity 1 33 0 1148 199 39 98 chr4 36253956 36254444 -166073903 - LTR37B LTR ERV1 0 468 10 409 297 13 39 chr4 36254453 36254608 -166073739 - MIR SINE MIR -28 234 84 22 0 0 0 chr4 36254876 36254898 -166073449 + AT_rich Low_complexity Low_complexity 1 22 0 500 284 118 71 chr4 36255502 36256093 -166072254 + L1MC1 LINE L1 2199 2817 -3329 8200 239 34 13 chr4 36256229 36259460 -166068887 + L1MC1 LINE L1 2709 6133 -200 575 184 0 0 chr4 36259484 36259582 -166068765 + AluJb SINE Alu 204 301 -11 1243 153 5 9 chr4 36259582 36259797 -166068550 + L1MC1 LINE L1 6120 6333 0 353 329 136 14 chr4 36259797 36260077 -166068270 - L2 LINE L2 -1359 1955 1642 3574 258 70 52 chr4 36260085 36261138 -166067209 + L1ME1 LINE L1 3554 4586 -1580 1941 168 10 39 chr4 36261138 36261524 -166066823 - THE1C LTR MaLR 0 375 1 3574 258 70 52 chr4 36261524 36261947 -166066400 + L1ME1 LINE L1 4586 5000 -1166 2075 126 52 25 chr4 36261947 36262312 -166066035 - THE1C LTR MaLR 0 375 1 3574 258 70 52 chr4 36262312 36262625 -166065722 + L1ME1 LINE L1 5000 5306 -860 616 97 39 0 chr4 36262625 36262728 -166065619 + L1PA14 LINE L1 6055 6161 0 3574 258 70 52 chr4 36262728 36263466 -166064881 + L1ME1 LINE L1 5306 6122 -44 369 216 75 75 chr4 36263366 36263500 -166064847 + L1MA10 LINE L1 6174 6307 -27 * 27 29 0 0 chr4 36263859 36263893 -166064454 + AT_rich Low_complexity Low_complexity 1 34 0 184 229 21 146 chr4 36264474 36264570 -166063777 + L2 LINE L2 3173 3256 -16 365 298 26 48 chr4 36264614 36264886 -166063461 + L1ME4a LINE L1 5562 5827 -294 27 0 0 0 chr4 36264896 36264923 -166063424 + AT_rich Low_complexity Low_complexity 1 27 0 25 31 0 0 chr4 36265657 36265689 -166062658 + AT_rich Low_complexity Low_complexity 1 32 0 1203 210 80 126 chr4 36266031 36266541 -166061806 - MER67D LTR ERV1 -3 511 25 241 239 0 42 chr4 36266639 36266710 -166061637 - AluJ/monomer SINE Alu 0 302 235 1484 216 76 15 chr4 36266710 36267039 -166061308 + MER66A-int LTR ERV1 3102 3450 -3226 1591 187 48 95 chr4 36267040 36268053 -166060294 + MER66A-int LTR ERV1 2943 4423 -2253 370 220 110 9 chr4 36268053 36268162 -166060185 + MER4D LTR ERV1 41 160 -712 1169 179 25 20 chr4 36268190 36268467 -166059880 + MER66A-int LTR ERV1 4604 6176 -1580 2042 167 26 0 chr4 36268550 36268892 -166059455 + MER66A-int LTR ERV1 6324 6674 -2 970 219 97 83 chr4 36268932 36269372 -166058975 + MER66A LTR ERV1 102 467 -11 183 298 0 0 chr4 36270387 36270434 -166057913 + L2 LINE L2 1765 1811 -1503 193 29 59 0 chr4 36270530 36270564 -166057783 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 294 273 34 19 chr4 36272763 36272941 -166055406 - MER41B LTR ERV1 -209 426 112 5049 211 34 14 chr4 36273115 36274578 -166053769 - L1MC1 LINE L1 -16 6317 4834 194 258 15 83 chr4 36275352 36275484 -166052863 + MIR SINE MIR 122 244 -18 21 57 0 0 chr4 36275766 36275801 -166052546 + AT_rich Low_complexity Low_complexity 1 35 0 230 242 20 141 chr4 36276421 36276570 -166051777 - L2 LINE L2 -256 3057 2927 298 288 0 0 chr4 36276941 36277021 -166051326 + (TA)n Simple_repeat Simple_repeat 1 80 0 2621 137 121 0 chr4 36277061 36277508 -166050839 - MER61D LTR ERV1 0 501 1 242 320 14 33 chr4 36277823 36277952 -166050395 + MIR SINE MIR 53 181 -27 703 174 57 113 chr4 36278823 36279053 -166049294 + MER20 DNA MER1_type 3 219 0 21 57 0 0 chr4 36279406 36279441 -166048906 + AT_rich Low_complexity Low_complexity 1 35 0 507 342 149 22 chr4 36279839 36280505 -166047842 - L2 LINE L2 0 3313 2532 1320 133 41 0 chr4 36280505 36280723 -166047624 + MER30 DNA MER1_type 4 230 0 507 342 149 22 chr4 36280723 36280797 -166047550 - L2 LINE L2 -781 2532 2469 265 209 45 30 chr4 36280801 36280868 -166047479 + (CAGAGA)n Simple_repeat Simple_repeat 4 71 0 2180 166 43 0 chr4 36280869 36281237 -166047110 - MSTA LTR MaLR -44 384 1 1641 193 16 10 chr4 36281285 36281596 -166046751 + MLT1A1 LTR MaLR 53 365 0 1661 185 79 6 chr4 36282299 36282639 -166045708 - MLT1A1 LTR MaLR 0 365 1 205 263 95 44 chr4 36283144 36283281 -166045066 - MIR SINE MIR 0 262 119 230 305 132 41 chr4 36284460 36284800 -166043547 + LTR16A1 LTR ERVL 73 441 -9 246 301 34 57 chr4 36284825 36284987 -166043360 - MLT1J1 LTR MaLR -280 166 36 1317 249 33 16 chr4 36285016 36285382 -166042965 - MLT1A2 LTR MaLR -2 372 1 296 311 67 62 chr4 36285608 36285746 -166042601 - L2 LINE L2 0 3313 3172 2027 121 7 10 chr4 36285746 36286043 -166042304 - AluSx SINE Alu -16 296 1 296 311 67 62 chr4 36286043 36286097 -166042250 - L2 LINE L2 -141 3172 3120 214 291 0 0 chr4 36286358 36286413 -166041934 + L2 LINE L2 3218 3272 0 587 329 140 3 chr4 36286764 36287086 -166041261 - L2 LINE L2 -82 3231 2866 285 181 309 11 chr4 36287117 36287211 -166041136 - LTR37B LTR ERV1 -291 177 56 1256 74 17 0 chr4 36287864 36288040 -166040307 + L1PA7 LINE L1 5975 6153 -1 1434 194 138 0 chr4 36288278 36288598 -166039749 + MSTD LTR MaLR 1 364 -32 2376 244 51 26 chr4 36289155 36289721 -166038626 - L1MDa LINE L1 -4039 2501 1906 623 189 90 0 chr4 36289721 36289843 -166038504 - FLAM_A SINE Alu 0 133 1 2376 244 51 26 chr4 36289843 36290093 -166038254 - L1MDa LINE L1 -4634 1906 1664 243 0 0 0 chr4 36290309 36290336 -166038011 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 332 294 0 28 chr4 36290539 36290648 -166037699 + MER5A DNA MER1_type 4 109 -80 267 363 0 0 chr4 36290709 36290800 -166037547 - MER5A DNA MER1_type -90 99 9 244 325 214 0 chr4 36291322 36291439 -166036908 - MER5A DNA MER1_type -1 188 47 290 342 0 0 chr4 36291650 36291726 -166036621 + MER5A DNA MER1_type 10 85 -104 351 274 111 17 chr4 36291862 36291979 -166036368 + L2 LINE L2 3183 3310 -3 321 337 99 51 chr4 36293089 36293383 -166034964 - MLT1H LTR MaLR -203 346 39 280 145 16 16 chr4 36293495 36293557 -166034790 + (TA)n Simple_repeat Simple_repeat 2 63 0 304 242 20 30 chr4 36293560 36293659 -166034688 - L1MC4 LINE L1 -1339 6703 6606 361 337 53 34 chr4 36293692 36294011 -166034336 - L2 LINE L2 -256 3057 2738 206 245 0 20 chr4 36294120 36294169 -166034178 - MIR SINE MIR -117 145 98 21 0 0 0 chr4 36294685 36294706 -166033641 + AT_rich Low_complexity Low_complexity 1 21 0 497 257 21 96 chr4 36295389 36295576 -166032771 - MER45A DNA AcHobo -5 173 1 245 274 14 41 chr4 36295686 36295759 -166032588 - MLT1E1 LTR MaLR -281 274 204 216 333 0 0 chr4 36295983 36296046 -166032301 + L2 LINE L2 3008 3070 -243 851 0 0 0 chr4 36296054 36296148 -166032199 + AluYa5/8 SINE Alu 203 296 -14 397 287 63 21 chr4 36296167 36296310 -166032037 + L2 LINE L2 3165 3313 0 755 214 7 0 chr4 36296435 36296601 -166031746 + FRAM SINE Alu 1 167 0 338 342 6 13 chr4 36296993 36297151 -166031196 + (TATATG)n Simple_repeat Simple_repeat 5 161 0 26 64 0 0 chr4 36297687 36297734 -166030613 + AT_rich Low_complexity Low_complexity 1 47 0 22 0 0 0 chr4 36297910 36297932 -166030415 + AT_rich Low_complexity Low_complexity 1 22 0 453 209 9 55 chr4 36298144 36298254 -166030093 - AluSg/x SINE Alu -25 285 181 1620 170 0 0 chr4 36298263 36298516 -166029831 - AluSx SINE Alu -26 286 34 5432 188 19 16 chr4 36299746 36300892 -166027455 + L1MC1 LINE L1 5186 6333 0 1813 241 60 20 chr4 36301063 36301515 -166026832 - MLT2B1 LTR ERVL -43 477 8 213 246 16 0 chr4 36301693 36301754 -166026593 + A-rich Low_complexity Low_complexity 1 62 0 211 308 100 39 chr4 36301916 36302046 -166026301 + L2 LINE L2 2801 2938 -376 393 276 55 8 chr4 36302334 36302461 -166025886 - MIR SINE MIR -3 259 127 905 225 40 18 chr4 36303548 36303770 -166024577 - MLT1E1 LTR MaLR -423 231 5 3975 161 10 9 chr4 36304556 36305240 -166023107 + MER50 LTR ERV1 1 685 -49 321 221 47 35 chr4 36305389 36305475 -166022872 + L2 LINE L2 3225 3311 -2 277 309 146 0 chr4 36305575 36305685 -166022662 + L2 LINE L2 3187 3312 -1 22 0 0 0 chr4 36305865 36305887 -166022460 + AT_rich Low_complexity Low_complexity 1 22 0 2404 71 0 3 chr4 36305929 36306239 -166022108 - AluY SINE Alu -2 309 1 351 324 88 28 chr4 36306642 36306858 -166021489 - MIR SINE MIR -13 249 21 724 156 251 11 chr4 36307018 36307197 -166021150 + L1MC1 LINE L1 6082 6303 -30 25 31 0 0 chr4 36307290 36307322 -166021025 + AT_rich Low_complexity Low_complexity 1 32 0 304 350 184 0 chr4 36307733 36307896 -166020451 - MIR SINE MIR -30 232 40 4823 166 17 43 chr4 36309043 36310185 -166018162 - L1PA16 LINE L1 0 6166 5040 1893 87 16 0 chr4 36310185 36310504 -166017843 - AluSx SINE Alu 0 349 27 4823 166 17 43 chr4 36310504 36310541 -166017806 - L1PA16 LINE L1 -1126 5040 5004 351 344 16 8 chr4 36311381 36311509 -166016838 - L1PA13 LINE L1 -5276 1511 1383 769 345 42 38 chr4 36311572 36312146 -166016201 - L1PA13 LINE L1 -6211 576 1 720 119 25 0 chr4 36312426 36312544 -166015803 - L1PA14 LINE L1 -3 6158 6038 3737 99 14 23 chr4 36312675 36313230 -166015117 - L1PA14 LINE L1 -112 6049 5500 * 7462 141 13 5 chr4 36313225 36314493 -166013854 - L1PA12 LINE L1 -4364 3220 1938 3066 171 29 0 chr4 36314482 36314973 -166013374 - L1PA12 LINE L1 -7076 505 1 * 26 64 0 0 chr4 36314976 36315023 -166013324 + AT_rich Low_complexity Low_complexity 1 47 0 205 240 188 10 chr4 36315329 36315425 -166012922 - MIR SINE MIR -66 196 84 3228 108 77 1 chr4 36315588 36316246 -166012101 + L1PA11 LINE L1 5107 5810 -358 620 124 44 35 chr4 36316246 36316359 -166011988 + L1PA11 LINE L1 6059 6172 -2 445 291 76 49 chr4 36316639 36316862 -166011485 + MLT1J LTR MaLR 12 240 -271 354 45 0 0 chr4 36317098 36317142 -166011205 + (CA)n Simple_repeat Simple_repeat 1 44 0 30 0 0 0 chr4 36317344 36317374 -166010973 + AT_rich Low_complexity Low_complexity 1 30 0 432 0 0 0 chr4 36317450 36317498 -166010849 + (TCTA)n Simple_repeat Simple_repeat 4 51 0 2311 68 7 7 chr4 36318326 36318622 -166009725 - AluSg SINE Alu -14 296 1 1951 116 42 0 chr4 36318817 36319101 -166009246 - AluSx SINE Alu -3 309 14 2667 122 25 0 chr4 36319134 36319535 -166008812 - L1PA10 LINE L1 -213 5955 5545 639 209 15 22 chr4 36319615 36319749 -166008598 - FLAM_A SINE Alu 0 133 1 28 71 0 0 chr4 36319857 36319913 -166008434 + AT_rich Low_complexity Low_complexity 1 56 0 2031 136 7 10 chr4 36320094 36320396 -166007951 + AluSq SINE Alu 1 301 -12 1650 271 159 24 chr4 36321028 36322175 -166006172 - Zaphod DNA AcHobo -2605 1426 124 1986 133 0 24 chr4 36322566 36322859 -166005488 - AluSx SINE Alu -26 286 1 2712 201 140 22 chr4 36323170 36323240 -166005107 + L1MA7 LINE L1 2871 2931 -3215 2449 98 8 11 chr4 36323240 36323596 -166004751 + THE1A LTR MaLR 1 355 0 2712 201 140 22 chr4 36323596 36324348 -166003999 + L1MA7 LINE L1 2931 3790 -2356 379 176 27 0 chr4 36324784 36324858 -166003489 + L1MA7 LINE L1 3776 3851 -2295 5077 195 21 31 chr4 36324976 36326184 -166002163 + L1MA7 LINE L1 4061 5257 -889 1990 174 32 22 chr4 36326197 36326599 -166001748 + L1MA7 LINE L1 5486 5891 -400 932 215 0 40 chr4 36326607 36326830 -166001517 + L1MA7 LINE L1 6029 6242 -49 2858 167 30 19 chr4 36326889 36327417 -166000930 + MER67C LTR ERV1 160 693 -17 1479 203 43 43 chr4 36327860 36328229 -166000118 + MLT1B LTR MaLR 22 390 0 1127 232 23 94 chr4 36328502 36328895 -165999452 + MLT1A1 LTR MaLR 1 365 0 2173 118 8 70 chr4 36330830 36330876 -165997471 - THE1C LTR MaLR 0 375 328 2356 81 0 3 chr4 36330876 36331185 -165997162 + AluY SINE Alu 1 308 -3 2173 118 8 70 chr4 36331185 36331538 -165996809 - THE1C LTR MaLR -47 328 1 3622 131 5 9 chr4 36331538 36332101 -165996246 - THE1C-int LTR MaLR 0 1580 1020 1377 173 44 2 chr4 36333198 36333525 -165994822 + L1MA5 LINE L1 5101 5441 -743 269 299 0 37 chr4 36333527 36333634 -165994713 + MER34 LTR ERV1 3 105 -437 * 1401 245 86 17 chr4 36333615 36334092 -165994255 + LTR48B LTR ERV1 130 639 -5 291 56 0 0 chr4 36334097 36334133 -165994214 - L1M2 LINE L1 -816 5475 5440 1941 222 108 12 chr4 36334151 36334427 -165993920 + L1MA5 LINE L1 5509 5757 -543 363 23 0 0 chr4 36334427 36334471 -165993876 + (TG)n Simple_repeat Simple_repeat 1 44 0 1941 222 108 12 chr4 36334471 36334704 -165993643 + L1MA5 LINE L1 5757 6067 -233 2425 74 0 0 chr4 36334803 36335114 -165993233 - AluY SINE Alu 0 311 1 27 0 0 0 chr4 36335621 36335648 -165992699 + AT_rich Low_complexity Low_complexity 1 27 0 190 27 0 81 chr4 36336033 36336070 -165992277 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 722 236 128 44 chr4 36336518 36336862 -165991485 + MLT1A2 LTR MaLR 2 374 0 2168 111 7 0 chr4 36337235 36337541 -165990806 - AluSq SINE Alu -5 308 1 1414 150 80 18 chr4 36337638 36337912 -165990435 + MER7A DNA MER2_type 2 290 -56 1221 137 28 5 chr4 36337907 36338119 -165990228 + MER67C LTR ERV1 494 710 0 * 21 0 0 0 chr4 36339503 36339524 -165988823 + AT_rich Low_complexity Low_complexity 1 21 0 257 214 48 10 chr4 36339656 36339759 -165988588 + (TA)n Simple_repeat Simple_repeat 2 108 0 183 129 0 0 chr4 36339762 36339793 -165988554 + (CA)n Simple_repeat Simple_repeat 2 32 0 2066 128 0 13 chr4 36340737 36341042 -165987305 - AluSx SINE Alu -11 301 1 30 27 0 0 chr4 36341050 36341087 -165987260 + AT_rich Low_complexity Low_complexity 1 37 0 664 219 16 154 chr4 36341343 36341589 -165986758 - MER20 DNA MER1_type -7 212 1 216 0 0 0 chr4 36343737 36343761 -165984586 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 279 319 43 0 chr4 36344276 36344345 -165984002 + MER45 DNA AcHobo 1 72 -106 22 0 0 0 chr4 36344517 36344539 -165983808 + AT_rich Low_complexity Low_complexity 1 22 0 476 200 44 0 chr4 36344643 36344733 -165983614 + MER58B DNA MER1_type 245 338 -3 758 232 35 142 chr4 36344877 36345385 -165982962 + MLT1C LTR MaLR 6 459 -8 294 73 0 0 chr4 36346832 36346873 -165981474 + (TG)n Simple_repeat Simple_repeat 2 42 0 2680 179 90 47 chr4 36347906 36348584 -165979763 + MER39 LTR ERV1 1 707 0 386 299 71 0 chr4 36348807 36348961 -165979386 - L1ME LINE L1 -421 5700 5536 2844 134 60 45 chr4 36348962 36349565 -165978782 - MER4B LTR ERV1 0 779 1 568 178 222 0 chr4 36349615 36349750 -165978597 + MER34C LTR ERV1 30 194 -391 1767 161 45 25 chr4 36349777 36350132 -165978215 - THE1C LTR MaLR 0 375 14 3103 155 49 0 chr4 36350135 36350702 -165977645 + LTR49 LTR ERV1 1 595 0 417 205 80 9 chr4 36350751 36350863 -165977484 + LTR48 LTR ERV1 356 475 -312 307 227 101 17 chr4 36350904 36351023 -165977324 + LTR48 LTR ERV1 609 737 -50 1740 179 45 6 chr4 36351194 36351524 -165976823 + MER61A LTR ERV1 1 343 0 1638 186 3 0 chr4 36351562 36351852 -165976495 + AluJo SINE Alu 10 300 -12 553 293 66 0 chr4 36351939 36352106 -165976241 - MER67D LTR ERV1 -8 506 329 1294 223 6 61 chr4 36352182 36352509 -165975838 - MER67D LTR ERV1 -203 311 3 3763 98 11 5 chr4 36352542 36353093 -165975254 + MER41A LTR ERV1 1 554 0 1906 142 17 53 chr4 36355308 36355611 -165972736 + MER7A DNA MER2_type 2 314 -2724 2329 56 0 7 chr4 36355611 36355968 -165972379 - AluY SINE Alu 0 355 1 1593 85 0 0 chr4 36355972 36356173 -165972174 - AluSc SINE Alu -16 293 93 1906 142 17 53 chr4 36356173 36356222 -165972125 + MER7A DNA MER2_type 317 345 -1 412 209 51 70 chr4 36356869 36357027 -165971320 - MER106B DNA MER1_type -1 1058 904 273 212 15 0 chr4 36358213 36358279 -165970068 + (TGAA)n Simple_repeat Simple_repeat 3 69 0 235 95 14 54 chr4 36360609 36360683 -165967664 + (TA)n Simple_repeat Simple_repeat 1 71 0 343 263 131 31 chr4 36363868 36364127 -165964220 - L1ME1 LINE L1 -12 6152 5865 2404 70 0 19 chr4 36364339 36364655 -165963692 + AluY SINE Alu 1 310 -1 1768 160 0 0 chr4 36365490 36365771 -165962576 - AluY SINE Alu -30 281 1 381 292 96 47 chr4 36365775 36366138 -165962209 + L1MC/D LINE L1 5390 5770 -2038 21 0 0 0 chr4 36366987 36367008 -165961339 + AT_rich Low_complexity Low_complexity 1 21 0 36 77 0 0 chr4 36367841 36367919 -165960428 + AT_rich Low_complexity Low_complexity 1 78 0 2191 93 3 10 chr4 36368236 36368560 -165959787 - AluY SINE Alu 0 311 1 25 31 0 0 chr4 36368949 36368981 -165959366 + AT_rich Low_complexity Low_complexity 1 32 0 2274 102 0 3 chr4 36370430 36370733 -165957614 - AluSg SINE Alu -8 302 1 246 62 0 0 chr4 36371112 36371144 -165957203 + (T)n Simple_repeat Simple_repeat 1 32 0 347 263 144 57 chr4 36371924 36372118 -165956229 - MIR SINE MIR 0 262 52 190 400 0 12 chr4 36372253 36372333 -165956014 + L2 LINE L2 2980 3058 -214 232 330 19 0 chr4 36373052 36373155 -165955192 + (TA)n Simple_repeat Simple_repeat 2 106 0 6201 227 23 23 chr4 36373969 36375062 -165953285 - L1 LINE L1 -886 5260 4168 1944 115 10 0 chr4 36375062 36375358 -165952989 - L1PA8 LINE L1 -6 6166 5868 1982 103 0 0 chr4 36375360 36375631 -165952716 - AluY SINE Alu -2 309 39 6201 227 23 23 chr4 36375631 36376158 -165952189 - L1 LINE L1 -1978 4168 3637 4815 151 47 9 chr4 36376159 36376391 -165951956 + L1PA16 LINE L1 5254 5476 -690 203 0 37 0 chr4 36376391 36376418 -165951929 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 4815 151 47 9 chr4 36376418 36377060 -165951287 + L1PA16 LINE L1 5476 6161 -5 358 202 71 30 chr4 36377818 36377917 -165950430 - MER58B DNA MER1_type 0 341 239 207 91 45 23 chr4 36377962 36378006 -165950341 + T-rich Low_complexity Low_complexity 2 46 0 2042 84 0 0 chr4 36378097 36378359 -165949988 + AluY SINE Alu 35 296 -15 23 86 0 0 chr4 36381237 36381295 -165947052 + AT_rich Low_complexity Low_complexity 1 58 0 223 299 0 0 chr4 36381542 36381629 -165946718 + A-rich Low_complexity Low_complexity 1 87 0 346 329 48 0 chr4 36381862 36382008 -165946339 - HERV16 LTR ERVL -2329 2667 2515 24 0 0 0 chr4 36382440 36382464 -165945883 + AT_rich Low_complexity Low_complexity 1 24 0 6533 76 4 61 chr4 36382957 36383931 -165944416 - L1PA7 LINE L1 0 6154 5187 789 343 67 29 chr4 36384585 36385409 -165942938 - HERV16 LTR ERVL -2984 2012 1095 668 352 38 16 chr4 36386246 36386561 -165941786 - LTR16B LTR ERVL -142 322 1 6660 67 18 0 chr4 36387930 36388885 -165939462 - L1PA7 LINE L1 -6 6148 5183 1705 169 145 16 chr4 36390293 36390672 -165937675 + MSTA LTR MaLR 1 428 0 290 296 14 42 chr4 36390805 36390947 -165937400 - LTR67 LTR ERVL -2 555 418 2296 84 0 0 chr4 36391241 36391559 -165936788 + AluY SINE Alu 1 311 0 2908 260 54 37 chr4 36391691 36392863 -165935484 + L1MCb LINE L1 41 1245 -4857 434 260 58 7 chr4 36392877 36393031 -165935316 + L1MCb LINE L1 1226 1387 -5177 2086 335 61 29 chr4 36393049 36394223 -165934124 - HERV16 LTR ERVL -3710 1286 75 625 353 64 8 chr4 36394276 36394542 -165933805 - LTR16A LTR ERVL 0 450 170 742 249 204 0 chr4 36394542 36394827 -165933520 + MER63 DNA MER1_type 567 909 -152 253 167 83 0 chr4 36395854 36395914 -165932433 + L1MA8 LINE L1 6223 6287 -4 203 171 0 0 chr4 36397465 36397500 -165930847 + (TATATG)n Simple_repeat Simple_repeat 2 36 0 191 306 0 0 chr4 36597859 36597895 -165730452 + G-rich Low_complexity Low_complexity 1 36 0 219 366 0 0 chr4 36598136 36598177 -165730170 + G-rich Low_complexity Low_complexity 1 41 0 189 0 0 0 chr4 36598197 36598218 -165730129 + (G)n Simple_repeat Simple_repeat 1 21 0 25 0 0 0 chr4 36598224 36598249 -165730098 + AT_rich Low_complexity Low_complexity 1 25 0 26 118 0 0 chr4 36598249 36598283 -165730064 + GC_rich Low_complexity Low_complexity 1 34 0 216 0 0 0 chr4 36598354 36598378 -165729969 + (G)n Simple_repeat Simple_repeat 1 24 0 205 290 0 0 chr4 36598531 36598600 -165729747 + G-rich Low_complexity Low_complexity 1 69 0 273 361 13 32 chr4 36598604 36598759 -165729588 + (TGGG)n Simple_repeat Simple_repeat 3 154 0 * 324 264 17 51 chr4 36598693 36598871 -165729476 + (GGGTG)n Simple_repeat Simple_repeat 1 172 0 203 206 27 41 chr4 36598915 36598988 -165729359 + (GGGTG)n Simple_repeat Simple_repeat 2 73 0 201 267 7 80 chr4 36599030 36599180 -165729167 + G-rich Low_complexity Low_complexity 5 143 0 552 169 0 0 chr4 36599400 36599489 -165728858 + C-rich Low_complexity Low_complexity 1 89 0 180 0 0 0 chr4 36599493 36599513 -165728834 + (A)n Simple_repeat Simple_repeat 1 20 0 29 0 0 0 chr4 36599532 36599561 -165728786 + GC_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr4 36599591 36599614 -165728733 + GC_rich Low_complexity Low_complexity 1 23 0 911 168 0 0 chr4 36599664 36599837 -165728510 + C-rich Low_complexity Low_complexity 1 173 0 267 259 0 0 chr4 36599901 36600040 -165728307 + C-rich Low_complexity Low_complexity 1 139 0 234 0 0 0 chr4 36600503 36600529 -165727818 + (A)n Simple_repeat Simple_repeat 1 26 0 575 193 0 0 chr4 36600631 36600745 -165727602 + C-rich Low_complexity Low_complexity 1 114 0 216 0 0 0 chr4 36600745 36600769 -165727578 + (A)n Simple_repeat Simple_repeat 1 24 0 22 0 0 0 chr4 36600802 36600824 -165727523 + GC_rich Low_complexity Low_complexity 1 22 0 252 184 0 0 chr4 36600966 36601015 -165727332 + C-rich Low_complexity Low_complexity 1 49 0 523 254 0 12 chr4 36601050 36601399 -165726948 + C-rich Low_complexity Low_complexity 1 344 0 624 129 0 0 chr4 36602013 36602114 -165726233 + (C)n Simple_repeat Simple_repeat 1 101 0 35 0 0 0 chr4 36602198 36602233 -165726114 + GC_rich Low_complexity Low_complexity 1 35 0 225 0 0 0 chr4 36602241 36602266 -165726081 + (C)n Simple_repeat Simple_repeat 1 25 0 186 143 0 0 chr4 36602284 36602319 -165726028 + (C)n Simple_repeat Simple_repeat 1 35 0 203 185 93 0 chr4 36602326 36602380 -165725967 + (CCCCG)n Simple_repeat Simple_repeat 1 59 0 183 264 0 0 chr4 36602401 36602492 -165725855 + C-rich Low_complexity Low_complexity 1 91 0 21 0 0 0 chr4 36603401 36603422 -165724925 + AT_rich Low_complexity Low_complexity 1 21 0 291 122 0 0 chr4 36603583 36603632 -165724715 + (TG)n Simple_repeat Simple_repeat 2 50 0 22 56 0 0 chr4 36604886 36604922 -165723425 + AT_rich Low_complexity Low_complexity 1 36 0 478 226 9 9 chr4 36605927 36606033 -165722314 - LTR41 LTR ERVL -587 186 81 5085 22 12 0 chr4 36606197 36606792 -165721555 + L1PA4 LINE L1 5550 6151 -4 21 57 0 0 chr4 36606887 36606922 -165721425 + AT_rich Low_complexity Low_complexity 1 35 0 225 316 124 34 chr4 36608055 36608232 -165720115 - L2 LINE L2 -8 3305 3113 221 324 178 24 chr4 36608519 36608732 -165719615 + MIR SINE MIR 11 256 -6 2186 122 0 0 chr4 36609134 36609440 -165718907 + AluSq SINE Alu 1 306 0 271 250 0 23 chr4 36609915 36610003 -165718344 + (TA)n Simple_repeat Simple_repeat 2 87 0 301 328 132 23 chr4 36610074 36610248 -165718099 - L2 LINE L2 -8 3305 3113 352 340 79 17 chr4 36610252 36610493 -165717854 - L2 LINE L2 -103 3210 2955 995 142 30 52 chr4 36610700 36610932 -165717415 - MSTA LTR MaLR -201 227 1 1424 316 140 48 chr4 36610933 36612029 -165716318 - L2 LINE L2 -1014 2300 1105 27 29 0 0 chr4 36612077 36612111 -165716236 + AT_rich Low_complexity Low_complexity 1 34 0 342 240 77 34 chr4 36612125 36612333 -165716014 - L1ME LINE L1 -346 5775 5559 229 268 127 0 chr4 36612362 36612433 -165715914 + MER76 LTR ERV 578 657 -31 979 274 98 55 chr4 36613280 36613439 -165714908 + L1M4b LINE L1 12 163 -6696 2241 122 0 0 chr4 36613439 36613743 -165714604 - AluSx SINE Alu -8 304 1 979 274 98 55 chr4 36613743 36614040 -165714307 + L1M4b LINE L1 163 488 -6371 38 22 0 0 chr4 36614093 36614138 -165714209 + AT_rich Low_complexity Low_complexity 1 45 0 323 370 31 17 chr4 36614139 36614498 -165713849 + HERV16 LTR ERVL 3680 4043 -1611 680 367 6 6 chr4 36614606 36614933 -165713414 + HERV16 LTR ERVL 4184 4510 -1144 286 403 16 12 chr4 36615047 36615367 -165712980 + HERV16 LTR ERVL 4696 5016 -748 1794 248 26 12 chr4 36615465 36615885 -165712462 + MSTB LTR MaLR 1 426 0 664 341 52 6 chr4 36616344 36616669 -165711678 + LTR16A LTR ERVL 96 435 -15 595 305 60 0 chr4 36616675 36616908 -165711439 + MER70A LTR ERVL 4 250 -222 418 147 13 0 chr4 36616906 36616981 -165711366 + MSTB2 LTR MaLR 380 455 -2 * 285 313 42 28 chr4 36618289 36618433 -165709914 - MIR SINE MIR -96 166 21 213 307 9 35 chr4 36618491 36618605 -165709742 + GA-rich Low_complexity Low_complexity 1 111 0 198 275 192 33 chr4 36619005 36619125 -165709222 - L3 LINE CR1 -275 1302 1164 1783 253 54 15 chr4 36619484 36620006 -165708341 + MLT1F LTR MaLR 1 542 0 281 274 77 60 chr4 36620075 36620192 -165708155 + HERV16 LTR ERVL 1251 1369 -3627 628 37 0 25 chr4 36620351 36620456 -165707891 - AluY SINE Alu 0 307 205 180 125 0 0 chr4 36620555 36620587 -165707760 + (A)n Simple_repeat Simple_repeat 1 32 0 197 0 0 67 chr4 36620676 36620706 -165707641 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 2537 50 0 0 chr4 36620719 36621019 -165707328 - AluY SINE Alu -11 300 1 1717 164 7 10 chr4 36621065 36621076 -165707271 - AluJo SINE Alu -14 298 288 744 9 26 26 chr4 36621076 36621192 -165707155 + (TTATA)n Simple_repeat Simple_repeat 4 119 0 1717 164 7 10 chr4 36621192 36621479 -165706868 - AluJo SINE Alu -24 288 1 418 331 34 0 chr4 36621630 36621805 -165706542 + HERV16 LTR ERVL 2118 2298 -2698 23 78 0 0 chr4 36622280 36622331 -165706016 + AT_rich Low_complexity Low_complexity 1 51 0 23 105 0 0 chr4 36625540 36625626 -165702721 + AT_rich Low_complexity Low_complexity 1 86 0 1310 121 0 0 chr4 36626217 36626391 -165701956 + AluSg/x SINE Alu 137 310 -2 451 182 11 0 chr4 36626397 36626485 -165701862 - MER2 DNA MER2_type -190 155 67 18371 170 54 6 chr4 36627528 36630645 -165697702 + L1MA3 LINE L1 11 3366 -4199 191 88 29 0 chr4 36630645 36630679 -165697668 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 18371 170 54 6 chr4 36630679 36631554 -165696793 + L1MA3 LINE L1 3366 4197 -3368 3449 239 105 15 chr4 36631557 36632538 -165695809 + L1PA12 LINE L1 7 1075 -6506 1319 200 0 4 chr4 36632533 36632773 -165695574 - L1PA12 LINE L1 -6010 1571 1333 * 1147 94 0 0 chr4 36632788 36632958 -165695389 + L1PA11 LINE L1 5642 5811 -357 2145 112 18 60 chr4 36633058 36633442 -165694905 + L1PA11 LINE L1 5804 6171 -3 10322 187 26 10 chr4 36633443 36635579 -165692768 + L1MA3 LINE L1 4185 6402 -1322 2206 156 52 42 chr4 36635579 36636003 -165692344 + MSTA LTR MaLR 1 428 0 10322 187 26 10 chr4 36636003 36637348 -165690999 + L1MA3 LINE L1 6402 7724 0 1920 220 62 48 chr4 36637571 36638117 -165690230 - MLT2B3 LTR ERVL 0 554 1 21 0 0 0 chr4 36638129 36638150 -165690197 + AT_rich Low_complexity Low_complexity 1 21 0 270 306 60 45 chr4 36639738 36639872 -165688475 - MIR SINE MIR -120 142 7 216 0 0 0 chr4 36639992 36640016 -165688331 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2243 83 3 0 chr4 36640019 36640320 -165688027 + AluY SINE Alu 1 302 -9 2127 104 3 0 chr4 36640364 36640690 -165687657 - pTR5 LTR ERV1 -2046 392 66 281 235 31 20 chr4 36640690 36640788 -165687559 - LTR30 LTR ERV1 -80 642 544 3063 145 53 52 chr4 36640791 36641636 -165686711 - pTR5 LTR ERV1 -417 2021 741 235 226 38 0 chr4 36641671 36641724 -165686623 + (CATATA)n Simple_repeat Simple_repeat 2 56 0 3822 184 34 7 chr4 36641727 36643116 -165685231 - L1P5 LINE L1 -381 5775 4345 9286 153 12 31 chr4 36643121 36644172 -165684175 + Tigger1 DNA MER2_type 672 1677 -741 2164 117 7 0 chr4 36644172 36644470 -165683877 - AluSx SINE Alu -12 300 1 9286 153 12 31 chr4 36644470 36645199 -165683148 + Tigger1 DNA MER2_type 1677 2418 0 2210 126 0 0 chr4 36645750 36646051 -165682296 - AluSx SINE Alu -11 301 1 24 53 0 0 chr4 36646730 36646768 -165681579 + AT_rich Low_complexity Low_complexity 1 38 0 618 347 12 4 chr4 36646785 36647027 -165681320 - MIR SINE MIR -10 252 9 2060 165 22 3 chr4 36647131 36647488 -165680859 - THE1B LTR MaLR 0 364 1 1559 108 0 0 chr4 36648080 36648284 -165680063 + AluSg/x SINE Alu 94 297 -13 180 0 0 0 chr4 36650362 36650382 -165677965 + (TG)n Simple_repeat Simple_repeat 2 21 0 203 188 21 0 chr4 36650398 36650446 -165677901 + (TATATG)n Simple_repeat Simple_repeat 5 53 0 1781 172 68 8 chr4 36650700 36651054 -165677293 + THE1C LTR MaLR 1 375 0 536 270 50 35 chr4 36651629 36651829 -165676518 - MER3 DNA MER1_type 0 209 7 23 33 0 0 chr4 36652212 36652242 -165676105 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr4 36652552 36652576 -165675771 + AT_rich Low_complexity Low_complexity 1 24 0 300 286 50 34 chr4 36652605 36652724 -165675623 - MIR SINE MIR -26 236 116 240 314 0 0 chr4 36653233 36653284 -165675063 - MER91 DNA MER1_type -12 128 78 204 260 13 13 chr4 36653840 36653917 -165674430 + A-rich Low_complexity Low_complexity 3 79 0 508 354 23 9 chr4 36654949 36655164 -165673183 + MIR SINE MIR 5 222 -40 1312 271 49 22 chr4 36657224 36657674 -165670673 - MLT1C LTR MaLR 0 467 6 182 37 37 0 chr4 36657820 36657847 -165670500 + (TTTTA)n Simple_repeat Simple_repeat 1 28 0 1676 152 22 14 chr4 36657847 36658123 -165670224 - AluSx SINE Alu -32 280 3 1272 210 13 46 chr4 36658129 36658434 -165669913 - AluJo SINE Alu -7 305 11 232 231 74 83 chr4 36658523 36658631 -165669716 + MIR SINE MIR 137 243 -19 2343 18 88 0 chr4 36659126 36659409 -165668938 - AluYa5 SINE Alu -3 308 1 22 0 0 0 chr4 36659948 36659970 -165668377 + AT_rich Low_complexity Low_complexity 1 22 0 268 361 62 0 chr4 36660151 36660281 -165668066 + L2 LINE L2 3134 3271 -1 26 30 0 0 chr4 36661674 36661707 -165666640 + AT_rich Low_complexity Low_complexity 1 33 0 21 36 0 0 chr4 36662120 36662148 -165666199 + AT_rich Low_complexity Low_complexity 1 28 0 182 355 63 37 chr4 36662401 36662590 -165665757 - MIR SINE MIR -46 216 23 4268 159 13 6 chr4 36662611 36663317 -165665030 - MER50 LTR ERV1 -23 711 1 2510 118 27 0 chr4 36663318 36663691 -165664656 - MER50-int LTR ERV1 -8 7197 6815 * 12109 160 35 22 chr4 36663680 36665936 -165662411 - MER50-int LTR ERV1 -994 6211 3928 3173 242 14 33 chr4 36665958 36666746 -165661601 - MER50-int LTR ERV1 -3627 3578 2806 2608 58 11 25 chr4 36666750 36667109 -165661238 - L1PA5 LINE L1 0 6154 5801 3983 156 22 35 chr4 36667134 36668296 -165660051 - MER50-int LTR ERV1 -5355 1850 624 2986 181 4 14 chr4 36668283 36668791 -165659556 - MER50-int LTR ERV1 -6702 503 1 * 1825 185 0 33 chr4 36668798 36668938 -165659409 - MER50 LTR ERV1 -29 705 562 2318 87 0 7 chr4 36668938 36669237 -165659110 + AluSc SINE Alu 1 297 -12 1825 185 0 33 chr4 36669237 36669426 -165658921 - MER50 LTR ERV1 -172 562 387 1735 184 40 17 chr4 36669526 36669701 -165658646 - MER50 LTR ERV1 -378 356 187 2086 128 3 0 chr4 36669701 36670005 -165658342 - AluSp SINE Alu -8 305 1 1735 184 40 17 chr4 36670005 36670177 -165658170 - MER50 LTR ERV1 -547 187 1 2117 117 7 3 chr4 36670597 36670897 -165657450 + AluSx SINE Alu 1 301 -11 21 36 0 0 chr4 36672010 36672038 -165656309 + AT_rich Low_complexity Low_complexity 1 28 0 23 86 0 0 chr4 36672269 36672327 -165656020 + AT_rich Low_complexity Low_complexity 1 58 0 862 222 39 5 chr4 36673362 36673565 -165654782 + L1ME1 LINE L1 5516 5725 -441 708 264 42 73 chr4 36673685 36674171 -165654176 + L1ME1 LINE L1 5711 6334 0 207 175 0 0 chr4 36674348 36674388 -165653959 + (TTCA)n Simple_repeat Simple_repeat 3 42 0 510 361 77 28 chr4 36675211 36675638 -165652709 + LTR16A LTR ERVL 1 448 -2 401 314 43 19 chr4 36675832 36676039 -165652308 - ERVL LTR ERVL -4724 1040 829 2168 156 8 19 chr4 36676512 36676891 -165651456 - THE1C LTR MaLR 0 375 1 254 50 25 0 chr4 36677304 36677344 -165651003 + (TG)n Simple_repeat Simple_repeat 2 42 0 23 33 0 0 chr4 36678673 36678703 -165649644 + AT_rich Low_complexity Low_complexity 1 30 0 186 292 92 87 chr4 36679240 36679425 -165648922 - MIR SINE MIR -8 254 69 252 247 35 0 chr4 36679517 36679602 -165648745 + (TA)n Simple_repeat Simple_repeat 2 89 0 718 229 73 124 chr4 36679801 36680333 -165648014 - MLT1D LTR MaLR 0 505 1 527 284 82 65 chr4 36680909 36681482 -165646865 + HAL1b LINE L1 61 643 -705 180 0 0 0 chr4 36681632 36681652 -165646695 + (GAGAA)n Simple_repeat Simple_repeat 3 22 0 2186 89 3 3 chr4 36684176 36684478 -165643869 - AluY SINE Alu -9 302 1 21 36 0 0 chr4 36684884 36684912 -165643435 + AT_rich Low_complexity Low_complexity 1 28 0 243 150 12 100 chr4 36685174 36685254 -165643093 + L1ME2 LINE L1 5952 6024 -140 241 288 27 0 chr4 36687385 36687458 -165640889 + MLT1J2 LTR MaLR 66 140 -310 1899 95 0 8 chr4 36687776 36688039 -165640308 + AluSc SINE Alu 1 261 -48 213 132 0 0 chr4 36688043 36688081 -165640266 + (TGGGGG)n Simple_repeat Simple_repeat 4 41 0 3099 193 66 19 chr4 36689187 36689881 -165638466 + LTR8A LTR ERV1 1 727 0 225 160 0 20 chr4 36690585 36690635 -165637712 - L1MC4 LINE L1 -1342 6700 6652 649 273 128 21 chr4 36690722 36691004 -165637343 - L1MA9 LINE L1 -38 6274 5963 540 90 13 0 chr4 36692254 36692332 -165636015 - MADE1 DNA Mariner 0 80 2 357 43 0 0 chr4 36692544 36692591 -165635756 + (CA)n Simple_repeat Simple_repeat 2 48 0 29 0 0 0 chr4 36693753 36693782 -165634565 + AT_rich Low_complexity Low_complexity 1 29 0 25 65 0 0 chr4 36694000 36694046 -165634301 + AT_rich Low_complexity Low_complexity 1 46 0 221 254 15 15 chr4 36694179 36694246 -165634101 + (TATG)n Simple_repeat Simple_repeat 4 70 0 2024 140 0 0 chr4 36694702 36694994 -165633353 - AluSx SINE Alu -20 292 1 30 45 0 0 chr4 36695500 36695544 -165632803 + AT_rich Low_complexity Low_complexity 1 44 0 21 57 0 0 chr4 36696032 36696067 -165632280 + AT_rich Low_complexity Low_complexity 1 35 0 27 0 0 0 chr4 36696482 36696509 -165631838 + AT_rich Low_complexity Low_complexity 1 27 0 269 351 58 40 chr4 36698701 36698875 -165629472 - L2 LINE L2 -213 3059 2883 3617 208 24 61 chr4 36698970 36700843 -165627504 + L1MB4 LINE L1 4386 6170 -10 225 0 0 0 chr4 36701101 36701126 -165627221 + (CA)n Simple_repeat Simple_repeat 2 26 0 2024 199 81 11 chr4 36702058 36702530 -165625817 - MLT1D LTR MaLR 0 505 1 22 35 0 0 chr4 36702539 36702568 -165625779 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr4 36702961 36702989 -165625358 + AT_rich Low_complexity Low_complexity 1 28 0 436 267 20 48 chr4 36703720 36703866 -165624481 + L2 LINE L2 3172 3313 0 409 299 91 83 chr4 36703855 36704506 -165623841 - L2 LINE L2 -12 3301 2648 * 340 266 0 43 chr4 36704708 36704802 -165623545 - Tigger7 DNA MER2_type -8 2479 2390 1222 246 20 0 chr4 36704803 36705055 -165623292 - Tigger7 DNA MER2_type -2222 265 9 28 48 0 0 chr4 36705068 36705110 -165623237 + AT_rich Low_complexity Low_complexity 1 42 0 27 29 0 0 chr4 36705516 36705550 -165622797 + AT_rich Low_complexity Low_complexity 1 34 0 657 144 0 0 chr4 36706681 36706792 -165621555 - AluSp/q SINE Alu -4 309 199 41 66 0 0 chr4 36707443 36707519 -165620828 + AT_rich Low_complexity Low_complexity 1 76 0 22 35 0 0 chr4 36707626 36707655 -165620692 + AT_rich Low_complexity Low_complexity 1 29 0 22 56 0 0 chr4 36708000 36708036 -165620311 + AT_rich Low_complexity Low_complexity 1 36 0 22 70 0 0 chr4 36710354 36710397 -165617950 + AT_rich Low_complexity Low_complexity 1 43 0 2064 160 12 9 chr4 36710753 36711091 -165617256 - MER1B DNA MER1_type 0 339 1 266 321 0 0 chr4 36711171 36711255 -165617092 + MIR3 SINE MIR 115 198 -10 306 333 44 33 chr4 36711806 36711989 -165616358 + L1ME3A LINE L1 5763 5947 -223 352 185 147 27 chr4 36712624 36712808 -165615539 - MER20B DNA MER1_type -74 709 504 24 67 0 0 chr4 36713478 36713523 -165614824 + AT_rich Low_complexity Low_complexity 1 45 0 269 335 92 18 chr4 36713782 36713946 -165614401 - MER20B DNA MER1_type -607 176 1 265 172 47 31 chr4 36714304 36714368 -165613979 + MLT1E2 LTR MaLR 19 83 -543 493 240 41 0 chr4 36714377 36714498 -165613849 + MLT1D LTR MaLR 379 504 -1 11125 228 23 11 chr4 36714566 36717336 -165611011 - L1P LINE L1 -1908 4238 1437 1319 249 0 4 chr4 36717359 36717640 -165610707 - L1PA13 LINE L1 -6507 280 1 428 345 79 11 chr4 36717661 36717928 -165610419 + L2 LINE L2 1733 2017 -1297 244 328 77 46 chr4 36717933 36718192 -165610155 - LTR16C LTR ERVL -1 490 224 511 326 69 67 chr4 36718394 36718870 -165609477 + L2 LINE L2 2017 2493 -821 278 286 36 50 chr4 36720346 36720486 -165607861 + MIR SINE MIR 74 211 -51 22 0 0 0 chr4 36720560 36720582 -165607765 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chr4 36720648 36720684 -165607663 + AT_rich Low_complexity Low_complexity 1 36 0 21 82 0 0 chr4 36720715 36720764 -165607583 + AT_rich Low_complexity Low_complexity 1 49 0 250 280 65 36 chr4 36720764 36720861 -165607486 - L1MC4a LINE L1 -1882 5926 5820 351 44 0 0 chr4 36720861 36720906 -165607441 + (CATATA)n Simple_repeat Simple_repeat 3 47 0 250 280 65 36 chr4 36720906 36720976 -165607371 - L1MC4a LINE L1 -1988 5820 5754 263 274 35 0 chr4 36721109 36721222 -165607125 - L1MC4a LINE L1 -2320 5488 5372 428 311 0 25 chr4 36721275 36721397 -165606950 - L2 LINE L2 0 3313 3195 2029 121 0 4 chr4 36721647 36721956 -165606391 + AluY SINE Alu 1 308 0 1386 345 26 24 chr4 36722213 36722969 -165605378 + ERVL LTR ERVL 2426 3183 -2581 555 275 137 20 chr4 36723205 36723565 -165604782 + MLT2F LTR ERVL 3 466 -197 331 249 17 17 chr4 36723633 36723810 -165604537 + (CATATA)n Simple_repeat Simple_repeat 4 180 0 979 334 85 20 chr4 36724005 36724566 -165603781 + L2 LINE L2 2699 3313 0 752 243 157 24 chr4 36726411 36726749 -165601598 + L1ME1 LINE L1 5647 6029 -137 21 36 0 0 chr4 36727445 36727473 -165600874 + AT_rich Low_complexity Low_complexity 1 28 0 22 70 0 0 chr4 36727622 36727665 -165600682 + AT_rich Low_complexity Low_complexity 1 43 0 2043 99 16 7 chr4 36729489 36729793 -165598554 + L1PA8 LINE L1 5864 6170 -2 246 333 0 0 chr4 36729813 36729897 -165598450 + (TG)n Simple_repeat Simple_repeat 1 84 0 22 35 0 0 chr4 36730126 36730155 -165598192 + AT_rich Low_complexity Low_complexity 1 29 0 429 20 0 0 chr4 36731812 36731862 -165596485 + (CA)n Simple_repeat Simple_repeat 2 51 0 242 299 0 0 chr4 36732829 36732896 -165595451 + L2 LINE L2 3246 3312 -1 887 193 160 102 chr4 36732934 36733385 -165594962 - L1MC2 LINE L1 -8 6336 5860 1020 232 62 71 chr4 36733405 36733759 -165594588 - MLT1A2 LTR MaLR -23 351 1 3936 242 38 48 chr4 36733760 36735143 -165593204 - MLT1A2-int LTR MaLR -1 1370 1 286 94 41 88 chr4 36735160 36735225 -165593122 - MLT1B LTR MaLR -309 65 1 247 250 16 16 chr4 36736141 36736205 -165592142 - MLT1-int LTR MaLR -709 662 599 1630 280 73 27 chr4 36736736 36737294 -165591053 + MLT1E LTR MaLR 1 584 -9 23 0 0 0 chr4 36737716 36737739 -165590608 + AT_rich Low_complexity Low_complexity 1 23 0 256 312 136 0 chr4 36738374 36738499 -165589848 - MLT1I LTR MaLR -194 215 74 198 103 0 0 chr4 36738665 36738694 -165589653 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 1410 162 15 15 chr4 36741704 36741963 -165586384 + L1PA16 LINE L1 5893 6151 -15 24 32 0 0 chr4 36742248 36742279 -165586068 + AT_rich Low_complexity Low_complexity 1 31 0 201 132 0 0 chr4 36743056 36743094 -165585253 + (GA)n Simple_repeat Simple_repeat 1 38 0 256 121 86 0 chr4 36743274 36743332 -165585015 - L1MCa LINE L1 -4499 1927 1865 685 150 53 0 chr4 36743339 36743497 -165584850 - FLAM_C SINE Alu 0 164 1 2543 154 18 11 chr4 36744582 36745031 -165583316 - Tigger2 DNA MER2_type 0 2718 2267 316 169 34 0 chr4 36745019 36745078 -165583269 - Tigger2 DNA MER2_type -2653 65 5 * 1220 131 10 0 chr4 36745338 36745537 -165582810 - L1PA13 LINE L1 -4 6159 5959 21 0 0 0 chr4 36745858 36745879 -165582468 + AT_rich Low_complexity Low_complexity 1 21 0 1868 146 67 17 chr4 36745929 36746286 -165582061 - THE1C LTR MaLR 0 375 1 198 0 0 0 chr4 36746294 36746316 -165582031 + (T)n Simple_repeat Simple_repeat 1 22 0 216 340 70 10 chr4 36747675 36747775 -165580572 - L2 LINE L2 0 3313 3208 1163 322 83 30 chr4 36748523 36749348 -165578999 + L2 LINE L2 2449 3312 -1 3944 37 2 0 chr4 36749545 36750028 -165578319 - L1P LINE L1 -1821 4325 3842 * 4790 42 0 0 chr4 36750017 36750595 -165577752 + L1PA4 LINE L1 5578 6155 0 22 56 0 0 chr4 36752636 36752672 -165575675 + AT_rich Low_complexity Low_complexity 1 36 0 471 335 66 0 chr4 36753334 36753501 -165574846 + MIR SINE MIR 41 218 -44 881 264 5 5 chr4 36753755 36753956 -165574391 + Tigger3b DNA MER2_type 5 205 -1026 4584 155 61 7 chr4 36753958 36754808 -165573539 + Tigger3b DNA MER2_type 336 1231 0 1519 97 10 0 chr4 36755198 36755405 -165572942 + PABL_A LTR ERV1 452 660 0 182 341 35 12 chr4 36755711 36755796 -165572551 + MER5A DNA MER1_type 82 168 -21 39 0 0 0 chr4 36755976 36756015 -165572332 + AT_rich Low_complexity Low_complexity 1 39 0 3789 226 46 11 chr4 36756038 36756863 -165571484 + MER21B LTR ERV1 2 855 -8 3182 141 87 8 chr4 36756986 36757574 -165570773 + LTR24C LTR ERV1 2 635 0 2954 100 19 1 chr4 36757608 36758171 -165570176 + PABL_A LTR ERV1 1 658 -2 244 297 8 17 chr4 36758578 36758696 -165569651 + (TA)n Simple_repeat Simple_repeat 2 118 0 40 87 0 0 chr4 36758815 36758918 -165569429 + AT_rich Low_complexity Low_complexity 1 103 0 2604 113 0 0 chr4 36759300 36759664 -165568683 - THE1B LTR MaLR 0 364 1 5223 119 19 42 chr4 36759664 36760530 -165567817 + L1PA14 LINE L1 5307 6152 -9 1106 240 24 17 chr4 36760540 36760832 -165567515 + L1MC3 LINE L1 7262 7555 -230 22 35 0 0 chr4 36760841 36760870 -165567477 + AT_rich Low_complexity Low_complexity 1 29 0 846 184 17 11 chr4 36760870 36761049 -165567298 - L1MA9 LINE L1 -215 6097 5918 632 159 63 16 chr4 36761049 36761170 -165567177 + L1MA9 LINE L1 6179 6310 -2 439 238 60 9 chr4 36761171 36761329 -165567018 + L1MD3 LINE L1 7616 7995 0 1760 136 21 17 chr4 36761679 36761966 -165566381 + AluSg SINE Alu 1 288 -22 1428 171 6 104 chr4 36762408 36762736 -165565611 - AluJb SINE Alu -16 296 1 684 284 38 21 chr4 36763031 36763270 -165565077 + MLT1F1 LTR MaLR 323 565 -2 230 300 22 22 chr4 36763273 36763363 -165564984 + MLT1F1-int LTR MaLR 2 91 -1280 263 234 26 13 chr4 36763452 36763529 -165564818 + MLT1F1-int LTR MaLR 290 367 -1004 1876 190 16 18 chr4 36763568 36763952 -165564395 + MLT1B LTR MaLR 8 390 0 564 255 0 70 chr4 36763982 36764082 -165564265 + MLT1F1-int LTR MaLR 428 509 -862 2080 128 3 10 chr4 36764082 36764395 -165563952 + AluSp SINE Alu 1 311 -2 564 255 0 70 chr4 36764395 36764494 -165563853 + MLT1F1-int LTR MaLR 509 613 -758 1026 279 3 35 chr4 36764638 36764921 -165563426 + MLT1E LTR MaLR 283 556 -37 254 235 78 78 chr4 36765322 36765424 -165562923 + MIR SINE MIR 115 216 -46 394 293 47 33 chr4 36767206 36767356 -165560991 - MIR SINE MIR -110 152 1 239 262 0 0 chr4 36767372 36767433 -165560914 + (TA)n Simple_repeat Simple_repeat 2 62 0 24 67 0 0 chr4 36768024 36768069 -165560278 + AT_rich Low_complexity Low_complexity 1 45 0 831 298 20 24 chr4 36768101 36768356 -165559991 + MIR SINE MIR 2 255 -7 1187 271 92 28 chr4 36769722 36770157 -165558190 - MLT1E LTR MaLR 0 593 131 378 316 72 0 chr4 36770235 36770374 -165557973 - Charlie8 DNA MER1_type -2155 262 114 1544 210 41 30 chr4 36770598 36770625 -165557722 - MLT1A2 LTR MaLR 0 374 349 1820 157 46 38 chr4 36770625 36770995 -165557352 + THE1C LTR MaLR 1 373 -2 1544 210 41 30 chr4 36770995 36771333 -165557014 - MLT1A2 LTR MaLR -25 349 5 664 292 90 22 chr4 36771427 36771694 -165556653 + MER58 DNA MER1_type 2 2365 -55 21 0 0 0 chr4 36772273 36772294 -165556053 + AT_rich Low_complexity Low_complexity 1 21 0 237 139 0 0 chr4 36772658 36772701 -165555646 + (CA)n Simple_repeat Simple_repeat 2 44 0 703 241 183 32 chr4 36772884 36772931 -165555416 + L1ME2 LINE L1 5740 5779 -385 1268 177 157 26 chr4 36772931 36773281 -165555066 - MSTD LTR MaLR 0 396 1 703 241 183 32 chr4 36773281 36773578 -165554769 + L1ME2 LINE L1 5779 6136 -28 21 82 0 0 chr4 36773696 36773745 -165554602 + AT_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr4 36774187 36774208 -165554139 + AT_rich Low_complexity Low_complexity 1 21 0 26 50 0 0 chr4 36774444 36774484 -165553863 + AT_rich Low_complexity Low_complexity 1 40 0 460 316 26 28 chr4 36775660 36775845 -165552502 + MIR3 SINE MIR 5 189 -19 595 244 0 0 chr4 36778211 36778330 -165550017 + FLAM_A SINE Alu 2 120 -13 6792 69 9 7 chr4 36780134 36781413 -165546934 + L1PA8 LINE L1 4892 6172 0 219 158 0 0 chr4 36781784 36781822 -165546525 + T-rich Low_complexity Low_complexity 1 38 0 6604 53 2 2 chr4 36781825 36782650 -165545697 - L1PA5 LINE L1 -2 6152 5328 1438 52 0 76 chr4 36784396 36784607 -165543740 + AluY SINE Alu 104 298 -13 980 238 268 37 chr4 36785099 36785270 -165543077 - LTR50 LTR ERVL -6 789 659 2175 78 3 0 chr4 36785270 36785606 -165542741 - AluSp SINE Alu 0 337 1 980 238 268 37 chr4 36785606 36786060 -165542287 - LTR50 LTR ERVL -136 659 18 2158 117 13 0 chr4 36786330 36786639 -165541708 - AluSp SINE Alu 0 313 1 22 35 0 0 chr4 36787802 36787831 -165540516 + AT_rich Low_complexity Low_complexity 1 29 0 3248 115 2 0 chr4 36788540 36788992 -165539355 - MLT2A2 LTR ERVL 0 453 1 323 254 32 0 chr4 36790114 36790240 -165538107 + Charlie5 DNA MER1_type 2495 2624 0 261 200 0 0 chr4 36790328 36790383 -165537964 + Charlie5 DNA MER1_type 2553 2607 -5 524 215 6 89 chr4 36790401 36790559 -165537788 - MLT1D LTR MaLR -360 145 1 1142 151 16 0 chr4 36791391 36791577 -165536770 - Tigger7 DNA MER2_type -1 2486 2298 501 227 149 0 chr4 36791583 36791724 -165536623 - Tigger7 DNA MER2_type -260 290 129 405 250 86 36 chr4 36792022 36792162 -165536185 - MIR SINE MIR 0 262 116 2246 123 0 0 chr4 36792704 36793013 -165535334 + AluSc SINE Alu 1 309 0 37 39 0 0 chr4 36793207 36793258 -165535089 + AT_rich Low_complexity Low_complexity 1 51 0 21 0 0 0 chr4 36793451 36793472 -165534875 + AT_rich Low_complexity Low_complexity 1 21 0 32 57 0 0 chr4 36793906 36793959 -165534388 + AT_rich Low_complexity Low_complexity 1 53 0 239 309 0 0 chr4 36794060 36794115 -165534232 + MIR SINE MIR 3 57 -205 3005 208 131 3 chr4 36794132 36794187 -165534160 + L1MB3 LINE L1 5375 5422 -761 351 0 0 0 chr4 36794187 36794226 -165534121 + (CA)n Simple_repeat Simple_repeat 1 39 0 3005 208 131 3 chr4 36794226 36794878 -165533469 + L1MB3 LINE L1 5422 6173 -10 323 338 28 0 chr4 36794913 36795058 -165533289 + MIR SINE MIR 72 220 -42 23 54 0 0 chr4 36795229 36795266 -165533081 + AT_rich Low_complexity Low_complexity 1 37 0 207 0 0 0 chr4 36795758 36795781 -165532566 + (TC)n Simple_repeat Simple_repeat 2 24 0 * 397 76 30 0 chr4 36795780 36795846 -165532501 + (TG)n Simple_repeat Simple_repeat 1 68 0 259 182 50 20 chr4 36796239 36796338 -165532009 + (TA)n Simple_repeat Simple_repeat 1 102 0 1482 160 56 21 chr4 36796487 36796775 -165531572 - AluJo SINE Alu -14 298 1 183 100 0 0 chr4 36797827 36797857 -165530490 + (CTG)n Simple_repeat Simple_repeat 1 30 0 183 80 0 0 chr4 36798435 36798460 -165529887 + (GA)n Simple_repeat Simple_repeat 2 26 0 181 229 29 71 chr4 36800251 36800321 -165528026 - L2 LINE L2 0 3313 3247 2045 142 3 0 chr4 36800410 36800712 -165527635 + AluSq SINE Alu 1 303 -10 4661 144 18 30 chr4 36801163 36802003 -165526344 - L1MA3 LINE L1 -10 6295 5466 1408 168 20 64 chr4 36802575 36802872 -165525475 + AluJb SINE Alu 6 289 -23 24 0 0 0 chr4 36802881 36802905 -165525442 + AT_rich Low_complexity Low_complexity 1 24 0 2032 156 24 14 chr4 36803096 36803467 -165524880 + THE1C LTR MaLR 1 375 0 7026 146 193 4 chr4 36803468 36803896 -165524451 + THE1C-int LTR MaLR 2 348 -1232 1712 125 34 4 chr4 36803896 36804160 -165524187 + AluY SINE Alu 1 272 -39 7026 146 193 4 chr4 36804160 36805056 -165523291 + THE1C-int LTR MaLR 348 1576 -4 2246 143 11 21 chr4 36805060 36805437 -165522910 + THE1C LTR MaLR 1 373 -2 26 30 0 0 chr4 36806017 36806050 -165522297 + AT_rich Low_complexity Low_complexity 1 33 0 279 0 0 0 chr4 36806075 36806106 -165522241 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 228 274 183 18 chr4 36806138 36806302 -165522045 + MIR SINE MIR 69 259 -3 270 350 60 0 chr4 36806715 36806815 -165521532 - MIR SINE MIR -155 107 2 1663 185 79 16 chr4 36806827 36807194 -165521153 - MLT1B LTR MaLR 0 390 1 291 28 0 0 chr4 36807342 36807378 -165520969 + (TA)n Simple_repeat Simple_repeat 1 36 0 1979 151 0 0 chr4 36807379 36807671 -165520676 - AluSx SINE Alu -20 292 1 4739 128 25 8 chr4 36807671 36808416 -165519931 - MER4E LTR ERV1 -21 758 1 3986 116 139 69 chr4 36809053 36810335 -165518012 - pTR5 LTR ERV1 0 2438 743 728 322 98 22 chr4 36810920 36811327 -165517020 + L2 LINE L2 2121 2558 -756 252 206 88 0 chr4 36811338 36811406 -165516941 - MER67D LTR ERV1 0 514 441 1619 200 33 0 chr4 36811439 36811744 -165516603 - MER67D LTR ERV1 -197 317 3 450 288 43 54 chr4 36811955 36812139 -165516208 + LTR50 LTR ERVL 1 182 -613 447 239 46 62 chr4 36812368 36812498 -165515849 + MLT1C LTR MaLR 10 137 -330 4840 90 11 5 chr4 36812507 36813163 -165515184 - PABL_A LTR ERV1 0 660 1 1467 152 34 75 chr4 36813163 36813519 -165514828 - MER4A LTR ERV1 -4 660 261 527 111 89 0 chr4 36813519 36813609 -165514738 - MER4A LTR ERV1 -566 98 1 352 203 31 96 chr4 36813609 36813843 -165514504 + MLT1C LTR MaLR 129 328 -139 455 214 20 0 chr4 36813844 36813942 -165514405 - LTR36 LTR ERV1 -3 608 509 3399 110 4 12 chr4 36813965 36814483 -165513864 - L1PA14 LINE L1 -3 6158 5645 402 140 14 100 chr4 36814484 36814948 -165513399 + (TA)n Simple_repeat Simple_repeat 1 423 0 694 214 0 6 chr4 36814949 36815108 -165513239 - L1P LINE L1 -1560 4586 4429 2824 172 26 4 chr4 36815109 36815616 -165512731 - LTR36 LTR ERV1 -93 518 1 2525 163 97 8 chr4 36815668 36816185 -165512162 - LTR49 LTR ERV1 -32 563 1 343 264 0 58 chr4 36816195 36816316 -165512031 + MLT1C LTR MaLR 354 467 0 1623 282 87 6 chr4 36816367 36816871 -165511476 + MLT1E2 LTR MaLR 52 596 -30 1715 118 148 172 chr4 36816871 36817578 -165510769 + LTR12 LTR ERV1 2 579 -135 455 294 118 9 chr4 36817642 36817863 -165510484 + LTR50 LTR ERVL 426 670 -125 600 200 86 0 chr4 36817865 36818005 -165510342 + LTR8 LTR ERV1 1 152 -539 755 219 0 2 chr4 36818009 36818270 -165510077 - AluJb SINE Alu 0 315 1 2253 205 28 67 chr4 36818271 36818852 -165509495 + LTR8 LTR ERV1 134 691 0 317 175 38 25 chr4 36818869 36818949 -165509398 + LTR33A LTR ERVL 436 516 -7 23 0 0 0 chr4 36820672 36820695 -165507652 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr4 36821394 36821415 -165506932 + AT_rich Low_complexity Low_complexity 1 21 0 1507 248 50 9 chr4 36822338 36822987 -165505360 + LTR68 LTR ERV1 1 738 -2 1226 161 124 166 chr4 36823661 36824282 -165504065 - LTR49 LTR ERV1 0 595 1 3663 229 21 5 chr4 36824362 36825212 -165503135 - L1MB8 LINE L1 0 6178 5315 3660 209 51 31 chr4 36825234 36826612 -165501735 - L1MB1 LINE L1 -1 6167 4819 2355 64 0 14 chr4 36826612 36826908 -165501439 - AluY SINE Alu -10 301 10 3660 209 51 31 chr4 36826908 36827031 -165501316 - L1MB1 LINE L1 -1349 4819 4700 2217 108 3 0 chr4 36827031 36827337 -165501010 - AluSp SINE Alu -6 307 1 3660 209 51 31 chr4 36827337 36827689 -165500658 - L1MB1 LINE L1 -1468 4700 4264 24 53 0 0 chr4 36827982 36828020 -165500327 + AT_rich Low_complexity Low_complexity 1 38 0 274 250 56 0 chr4 36828203 36828275 -165500072 - MER103 DNA DNA -85 81 6 2002 121 14 0 chr4 36828458 36828747 -165499600 + AluSx SINE Alu 5 297 -15 465 323 64 9 chr4 36829590 36829810 -165498537 + L3b LINE CR1 1207 1438 -145 563 297 8 81 chr4 36830051 36830287 -165498060 - MIR SINE MIR -30 232 14 21 0 0 0 chr4 36830412 36830433 -165497914 + AT_rich Low_complexity Low_complexity 1 21 0 225 0 0 0 chr4 36830677 36830702 -165497645 + (TG)n Simple_repeat Simple_repeat 2 26 0 2056 193 8 10 chr4 36831003 36831396 -165496951 - MSTD LTR MaLR -4 392 1 21 0 0 0 chr4 36833045 36833066 -165495281 + AT_rich Low_complexity Low_complexity 1 21 0 2834 6 0 0 chr4 36833220 36833531 -165494816 - AluYa5 SINE Alu 0 311 1 22 35 0 0 chr4 36834224 36834253 -165494094 + AT_rich Low_complexity Low_complexity 1 29 0 274 327 45 51 chr4 36834497 36834653 -165493694 + L2 LINE L2 2645 2799 -515 2910 198 34 6 chr4 36835170 36835815 -165492532 + L1MCa LINE L1 710 1372 -5054 1153 185 63 20 chr4 36835852 36836106 -165492241 + L1MC1 LINE L1 6069 6333 0 300 319 96 37 chr4 36837145 36837333 -165491014 + MIR SINE MIR 14 212 -50 398 278 27 135 chr4 36837428 36837687 -165490660 - MIR SINE MIR -1 261 31 297 194 56 31 chr4 36838742 36838902 -165489445 + (TA)n Simple_repeat Simple_repeat 2 165 0 209 350 110 10 chr4 36839826 36839926 -165488421 - L2 LINE L2 -24 3289 3180 23 33 0 0 chr4 36840116 36840146 -165488201 + AT_rich Low_complexity Low_complexity 1 30 0 2651 233 62 38 chr4 36840233 36841073 -165487274 - L1ME2 LINE L1 -17 6147 5288 574 288 12 0 chr4 36841134 36841297 -165487050 - HERVL40 LTR ERVL -5343 187 23 1755 255 45 20 chr4 36841329 36841819 -165486528 - LTR40a LTR ERVL -17 502 1 213 322 17 0 chr4 36841922 36841981 -165486366 - L2 LINE L2 -3 3310 3251 1301 264 103 48 chr4 36842017 36842265 -165486082 + Zaphod DNA AcHobo 1 234 -3797 2713 94 6 0 chr4 36842265 36842627 -165485720 + THE1B LTR MaLR 1 364 0 1301 264 103 48 chr4 36842627 36843297 -165485050 + Zaphod DNA AcHobo 234 970 -3061 949 235 24 37 chr4 36843366 36843741 -165484606 + Zaphod DNA AcHobo 3662 4031 0 21 0 0 0 chr4 36845108 36845129 -165483218 + AT_rich Low_complexity Low_complexity 1 21 0 200 159 0 23 chr4 36846316 36846360 -165481987 + GA-rich Low_complexity Low_complexity 3 45 0 488 290 22 14 chr4 36847665 36847803 -165480544 - MER5B DNA MER1_type -36 142 4 209 247 68 0 chr4 36848087 36848160 -165480187 + MIR SINE MIR 124 201 -61 21 36 0 0 chr4 36848200 36848228 -165480119 + AT_rich Low_complexity Low_complexity 1 28 0 336 352 46 35 chr4 36848397 36848681 -165479666 + ERVL LTR ERVL 1506 1792 -3972 354 353 38 29 chr4 36849086 36849324 -165479023 + ERVL LTR ERVL 4072 4311 -1453 345 315 82 57 chr4 36849634 36850333 -165478014 + ERVL LTR ERVL 4748 5463 -301 1372 133 71 47 chr4 36851174 36851429 -165476918 + AluSx SINE Alu 33 293 -19 211 324 20 39 chr4 36851570 36851672 -165476675 - MIR SINE MIR -17 245 146 21 0 0 0 chr4 36851672 36851693 -165476654 + AT_rich Low_complexity Low_complexity 1 21 0 1178 251 57 0 chr4 36851899 36852266 -165476081 - L1MEc LINE L1 -4419 1977 1590 1516 252 91 29 chr4 36852317 36852737 -165475610 + MER77 LTR ERV1 54 513 -92 210 71 0 0 chr4 36852737 36852765 -165475582 + (TTG)n Simple_repeat Simple_repeat 3 30 0 1516 252 91 29 chr4 36852765 36852863 -165475484 + MER77 LTR ERV1 513 604 -1 1940 275 103 45 chr4 36853054 36853689 -165474658 - L1MEc LINE L1 -4994 1402 805 1899 162 0 16 chr4 36853689 36853998 -165474349 - AluJo SINE Alu -8 304 1 1940 275 103 45 chr4 36853998 36854071 -165474276 - L1MEc LINE L1 -5591 805 738 2088 105 7 0 chr4 36854071 36854357 -165473990 - AluSp SINE Alu -23 290 3 1940 275 103 45 chr4 36854357 36854833 -165473514 - L1MEc LINE L1 -5658 738 148 25 0 0 0 chr4 36854973 36854998 -165473349 + AT_rich Low_complexity Low_complexity 1 25 0 230 329 24 12 chr4 36855021 36855106 -165473241 - MIR SINE MIR -140 122 37 22 0 0 0 chr4 36856235 36856257 -165472090 + AT_rich Low_complexity Low_complexity 1 22 0 650 25 101 0 chr4 36856257 36856415 -165471932 + (TA)n Simple_repeat Simple_repeat 1 174 0 6992 107 21 16 chr4 36856430 36857482 -165470865 - MER11C LTR ERVK -14 1057 1 31 110 0 0 chr4 36858132 36858268 -165470079 + AT_rich Low_complexity Low_complexity 1 136 0 267 307 111 13 chr4 36858445 36858598 -165469749 + MLT1G1 LTR MaLR 3 170 -425 568 159 26 0 chr4 36858825 36858938 -165469409 - L1MA9 LINE L1 0 6312 6197 1806 147 6 32 chr4 36858946 36859259 -165469088 + AluSx SINE Alu 7 311 -1 2497 224 49 54 chr4 36859317 36860145 -165468202 - L1MA8 LINE L1 -255 6036 5212 * 5192 211 77 4 chr4 36860141 36861422 -165466925 + L1MA8 LINE L1 3808 5181 -965 3564 116 13 13 chr4 36861581 36862134 -165466213 + L1PA13 LINE L1 5607 6159 -4 1471 240 81 42 chr4 36862204 36862750 -165465597 - MLT1F1 LTR MaLR 0 567 1 30 27 0 0 chr4 36863193 36863230 -165465117 + AT_rich Low_complexity Low_complexity 1 37 0 403 304 171 0 chr4 36863266 36863447 -165464900 + MIR SINE MIR 50 261 -1 302 323 21 0 chr4 36864431 36864524 -165463823 - L1MC4 LINE L1 -1334 6708 6614 231 36 0 0 chr4 36864524 36864552 -165463795 - L1PA6 LINE L1 -17 6137 6110 1199 251 76 23 chr4 36865766 36866161 -165462186 + LTR52 LTR ERVL 1 416 -5 1115 252 71 41 chr4 36866421 36867238 -165461109 + L1ME4a LINE L1 4726 5577 -585 1253 106 0 6 chr4 36867238 36867418 -165460929 + L1PA16 LINE L1 5814 5992 -174 314 289 39 10 chr4 36869111 36869215 -165459132 + L1ME4a LINE L1 6014 6120 -1 26 0 0 0 chr4 36869319 36869345 -165459002 + AT_rich Low_complexity Low_complexity 1 26 0 25 31 0 0 chr4 36869468 36869500 -165458847 + AT_rich Low_complexity Low_complexity 1 32 0 309 274 124 0 chr4 36870285 36870398 -165457949 + MIR SINE MIR 136 262 0 472 311 73 18 chr4 36871260 36871588 -165456759 + Charlie7 DNA MER1_type 349 694 -1918 2106 143 0 0 chr4 36872031 36872338 -165456009 + AluSx SINE Alu 1 307 -5 182 330 57 11 chr4 36872622 36872710 -165455637 - MIR SINE MIR -62 146 55 21 57 0 0 chr4 36872835 36872870 -165455477 + AT_rich Low_complexity Low_complexity 1 35 0 1943 134 7 0 chr4 36873022 36873314 -165455033 + AluSx SINE Alu 1 294 -18 22 35 0 0 chr4 36873482 36873511 -165454836 + AT_rich Low_complexity Low_complexity 1 29 0 809 244 46 14 chr4 36874042 36874259 -165454088 + MER58A DNA MER1_type 1 224 0 197 259 165 0 chr4 36874400 36874485 -165453862 + L3 LINE CR1 839 937 -640 739 356 56 43 chr4 36874658 36875394 -165452953 + L2 LINE L2 1706 2450 -864 557 286 185 21 chr4 36876173 36876551 -165451796 - L2 LINE L2 -22 3291 2852 272 330 0 19 chr4 36877108 36877214 -165451133 - L2 LINE L2 -700 2614 2511 1140 289 75 38 chr4 36877233 36877912 -165450435 + L2 LINE L2 2614 3313 0 181 322 110 17 chr4 36877926 36878044 -165450303 - L2 LINE L2 -815 2499 2371 22 35 0 0 chr4 36878084 36878113 -165450234 + AT_rich Low_complexity Low_complexity 1 29 0 193 167 0 0 chr4 36878882 36878912 -165449435 - L3 LINE CR1 -1119 458 429 257 324 121 43 chr4 36879268 36879799 -165448548 + L2 LINE L2 1977 2548 -766 471 344 97 41 chr4 36880440 36880702 -165447645 + L2 LINE L2 1996 2242 -1072 3082 98 11 26 chr4 36880702 36881160 -165447187 + MLT2A2 LTR ERVL 1 451 -2 471 344 97 41 chr4 36881160 36881600 -165446747 + L2 LINE L2 2242 2737 -577 1426 195 37 103 chr4 36881600 36882114 -165446233 + MLT1D LTR MaLR 21 500 -5 401 291 37 22 chr4 36882359 36882493 -165445854 + L2 LINE L2 3137 3272 0 245 257 50 69 chr4 36882852 36882953 -165445394 + L2 LINE L2 3174 3272 0 636 14 0 0 chr4 36883078 36883151 -165445196 + (TTTC)n Simple_repeat Simple_repeat 1 73 0 1191 112 0 0 chr4 36883154 36883333 -165445014 + (TTCC)n Simple_repeat Simple_repeat 2 180 0 248 326 31 10 chr4 36884880 36884978 -165443369 - L2 LINE L2 0 3313 3214 190 286 20 20 chr4 36886235 36886284 -165442063 + MIR SINE MIR 83 131 -77 243 0 0 0 chr4 36886855 36886882 -165441465 + (A)n Simple_repeat Simple_repeat 1 27 0 31 26 0 0 chr4 36887251 36887289 -165441058 + AT_rich Low_complexity Low_complexity 1 38 0 23 33 0 0 chr4 36888644 36888674 -165439673 + AT_rich Low_complexity Low_complexity 1 30 0 6158 222 36 14 chr4 36888720 36890277 -165438070 + L1 LINE L1 3324 4915 -1231 21 0 0 0 chr4 36890505 36890526 -165437821 + AT_rich Low_complexity Low_complexity 1 21 0 689 315 41 48 chr4 36890792 36891208 -165437139 + L1MCb LINE L1 1 413 -5632 655 219 39 22 chr4 36891622 36891800 -165436547 + L1MCb LINE L1 1625 1805 -4759 425 204 70 86 chr4 36891782 36891968 -165436379 + L1MB7 LINE L1 5993 6175 -9 * 631 262 190 9 chr4 36892072 36892419 -165435928 + L1MCb LINE L1 1936 2345 -4219 5310 158 39 1 chr4 36892419 36894104 -165434243 + L1PA13 LINE L1 4392 6140 -23 198 0 0 0 chr4 36894109 36894131 -165434216 + (TAAAA)n Simple_repeat Simple_repeat 5 26 0 689 214 124 4 chr4 36894131 36894377 -165433970 + L1MCb LINE L1 2333 2613 -3951 24 53 0 0 chr4 36894402 36894440 -165433907 + AT_rich Low_complexity Low_complexity 1 38 0 23 54 0 0 chr4 36894976 36895013 -165433334 + AT_rich Low_complexity Low_complexity 1 37 0 26 74 0 0 chr4 36895440 36895494 -165432853 + AT_rich Low_complexity Low_complexity 1 54 0 28 29 0 0 chr4 36895930 36895965 -165432382 + AT_rich Low_complexity Low_complexity 1 35 0 30 0 0 0 chr4 36896035 36896065 -165432282 + AT_rich Low_complexity Low_complexity 1 30 0 219 114 45 0 chr4 36896631 36896675 -165431672 + T-rich Low_complexity Low_complexity 3 48 0 5120 175 18 48 chr4 36896677 36898512 -165429835 - L1PB3 LINE L1 0 6857 5103 1601 179 0 31 chr4 36898512 36898803 -165429544 - AluSx SINE Alu -30 282 1 5120 175 18 48 chr4 36898803 36899087 -165429260 - L1PB3 LINE L1 -1754 5103 4812 28 0 0 0 chr4 36899087 36899115 -165429232 + AT_rich Low_complexity Low_complexity 1 28 0 32 26 0 0 chr4 36899216 36899255 -165429092 + AT_rich Low_complexity Low_complexity 1 39 0 36 23 0 0 chr4 36899623 36899666 -165428681 + AT_rich Low_complexity Low_complexity 1 43 0 21 57 0 0 chr4 36899836 36899871 -165428476 + AT_rich Low_complexity Low_complexity 1 35 0 34 0 0 0 chr4 36901071 36901105 -165427242 + AT_rich Low_complexity Low_complexity 1 34 0 1720 219 60 25 chr4 36902902 36903350 -165424997 - MLT1C LTR MaLR -3 464 1 230 0 33 0 chr4 36903353 36903383 -165424964 + (TAGA)n Simple_repeat Simple_repeat 3 33 0 21 36 0 0 chr4 36903429 36903457 -165424890 + AT_rich Low_complexity Low_complexity 1 28 0 476 59 0 0 chr4 36903631 36903699 -165424648 + Alu SINE Alu 243 310 0 27 0 0 0 chr4 36903738 36903765 -165424582 + AT_rich Low_complexity Low_complexity 1 27 0 2972 236 11 25 chr4 36903874 36904691 -165423656 - L1PB3 LINE L1 -2669 4180 3375 1403 160 17 42 chr4 36904691 36904979 -165423368 - AluJo SINE Alu -11 301 21 1858 221 11 7 chr4 36904989 36905423 -165422924 - L1PB3 LINE L1 -3929 2920 2485 2808 175 76 14 chr4 36905584 36906160 -165422187 - LTR9 LTR ERV1 0 612 1 309 357 160 21 chr4 36906174 36906561 -165421786 + MLT1J LTR MaLR 38 478 -33 22 56 0 0 chr4 36906637 36906673 -165421674 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr4 36906741 36906763 -165421584 + AT_rich Low_complexity Low_complexity 1 22 0 1883 180 24 0 chr4 36906829 36907168 -165421179 - MER7A DNA MER2_type -1 345 1 2339 157 72 52 chr4 36907176 36907693 -165420654 + L1MA9 LINE L1 5782 6308 -4 829 146 42 167 chr4 36907969 36908161 -165420186 - MSTA LTR MaLR 0 428 197 261 75 0 50 chr4 36908153 36908193 -165420154 - MSTA LTR MaLR -337 38 1 * 363 357 25 20 chr4 36908205 36908404 -165419943 - MIR SINE MIR -7 255 56 407 279 0 0 chr4 36908755 36908866 -165419481 + L1MA10 LINE L1 6217 6327 -7 198 143 0 0 chr4 36908895 36908930 -165419417 + (TA)n Simple_repeat Simple_repeat 1 35 0 2769 191 12 12 chr4 36909035 36909537 -165418810 + MLT2B2 LTR ERVL 1 502 -13 230 336 77 0 chr4 36910211 36910315 -165418032 + MLT1I LTR MaLR 59 170 -239 2323 58 3 46 chr4 36910345 36910670 -165417677 - AluY SINE Alu 0 311 1 288 221 15 0 chr4 36910759 36910827 -165417520 + MLT1I LTR MaLR 316 384 -25 22 35 0 0 chr4 36912285 36912314 -165416033 + AT_rich Low_complexity Low_complexity 1 29 0 32 43 0 0 chr4 36912529 36912575 -165415772 + AT_rich Low_complexity Low_complexity 1 46 0 22 35 0 0 chr4 36913066 36913095 -165415252 + AT_rich Low_complexity Low_complexity 1 29 0 2084 183 35 21 chr4 36913743 36914170 -165414177 + Tigger2a DNA MER2_type 2 434 0 2206 145 50 8 chr4 36914929 36915309 -165413038 - MSTA LTR MaLR 0 428 33 1629 168 10 34 chr4 36915702 36916019 -165412328 + AluSx SINE Alu 1 310 0 22 56 0 0 chr4 36916698 36916734 -165411613 + AT_rich Low_complexity Low_complexity 1 36 0 264 365 90 9 chr4 36916984 36917206 -165411141 - MIR SINE MIR 0 262 23 231 266 0 0 chr4 36917907 36917971 -165410376 + (CATTA)n Simple_repeat Simple_repeat 2 65 0 411 221 16 33 chr4 36918282 36918404 -165409943 + L1M4 LINE L1 56 175 -6367 231 377 57 0 chr4 36918405 36918527 -165409820 + L2 LINE L2 3143 3271 -1 1725 195 28 19 chr4 36918806 36919165 -165409182 - MLT1A1 LTR MaLR 0 365 4 25 0 0 0 chr4 36920298 36920323 -165408024 + AT_rich Low_complexity Low_complexity 1 25 0 267 295 19 19 chr4 36920877 36920982 -165407365 + MLT1K LTR MaLR 482 586 -2 28 79 0 0 chr4 36923605 36923668 -165404679 + AT_rich Low_complexity Low_complexity 1 63 0 211 245 41 0 chr4 36923953 36924002 -165404345 - L2 LINE L2 0 3272 3222 759 193 16 31 chr4 36924012 36924204 -165404143 - MER53 DNA DNA 0 189 1 23354 37 2 2 chr4 36924480 36928147 -165400200 - L1PA4 LINE L1 0 6155 2487 3920 220 85 36 chr4 36928369 36928705 -165399642 - L1MB5 LINE L1 -1 6173 5855 2300 65 10 13 chr4 36928705 36929012 -165399335 - AluY SINE Alu -5 306 1 3920 220 85 36 chr4 36929012 36930257 -165398090 - L1MB5 LINE L1 -319 5855 4503 305 315 124 22 chr4 36930624 36930802 -165397545 - MLT1G1 LTR MaLR -330 200 5 249 228 158 79 chr4 36930850 36931052 -165397295 - MLT1H1-int LTR MaLR -15 1356 1139 273 265 41 41 chr4 36931516 36931614 -165396733 - MLT1H1-int LTR MaLR -1270 101 4 779 272 118 69 chr4 36931618 36932137 -165396210 - MLT1H1 LTR MaLR 0 555 12 403 305 60 46 chr4 36932155 36932525 -165395822 + L1ME3A LINE L1 5582 5956 -214 1880 206 115 0 chr4 36932691 36933118 -165395229 - MLT1D LTR MaLR -2 503 28 6449 151 54 23 chr4 36933119 36935374 -165392973 + L1MA1 LINE L1 3986 6302 0 24 0 0 0 chr4 36935374 36935398 -165392949 + AT_rich Low_complexity Low_complexity 1 24 0 376 322 82 24 chr4 36935702 36935910 -165392437 - MLT1I LTR MaLR -120 289 70 22 35 0 0 chr4 36936031 36936060 -165392287 + AT_rich Low_complexity Low_complexity 1 29 0 366 298 82 19 chr4 36936254 36936412 -165391935 - MIR SINE MIR -71 191 24 213 39 0 0 chr4 36937145 36937171 -165391176 + (TAA)n Simple_repeat Simple_repeat 1 26 0 403 353 25 0 chr4 36937513 36937717 -165390630 + L1MC4 LINE L1 5593 5801 -2007 2895 96 0 2 chr4 36938346 36938741 -165389606 - L1P LINE L1 -2362 3784 3389 372 71 0 36 chr4 36938741 36938797 -165389550 + L1PA8 LINE L1 6113 6166 -6 1674 223 54 65 chr4 36938941 36939386 -165388961 - LTR42 LTR ERVL 0 495 56 352 311 44 16 chr4 36939423 36939606 -165388741 + L1MC4 LINE L1 6696 6883 -1159 389 236 73 0 chr4 36939646 36939756 -165388591 - MLT2B2 LTR ERVL -397 118 1 224 260 21 52 chr4 36940017 36940113 -165388234 - MIR SINE MIR -65 197 105 2087 89 7 10 chr4 36940386 36940689 -165387658 + AluY SINE Alu 1 302 -9 16984 192 26 14 chr4 36941111 36944911 -165383436 + L1PA15-16 LINE L1 9 3842 -3007 1086 208 8 8 chr4 36944911 36945147 -165383200 + L1PA16 LINE L1 5931 6166 0 23 0 0 0 chr4 36946004 36946027 -165382320 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr4 36946311 36946334 -165382013 + AT_rich Low_complexity Low_complexity 1 23 0 279 114 0 0 chr4 36946861 36946905 -165381442 + (TG)n Simple_repeat Simple_repeat 2 45 0 198 0 0 0 chr4 36947396 36947418 -165380929 + (TA)n Simple_repeat Simple_repeat 2 23 0 205 179 0 0 chr4 36947587 36947626 -165380721 + GA-rich Low_complexity Low_complexity 2 40 0 292 279 72 0 chr4 36948017 36948128 -165380219 + L1MEc LINE L1 45 163 -6233 622 257 57 33 chr4 36948663 36948873 -165379474 - MER58A DNA MER1_type -3 221 7 393 294 76 89 chr4 36949300 36949603 -165378744 - HAL1 LINE L1 -145 2362 2064 324 279 67 67 chr4 36949959 36950124 -165378223 + HsTC2 DNA Tc2 3 167 -1731 247 298 44 0 chr4 36950184 36950298 -165378049 + HsTC2 DNA Tc2 1530 1648 -250 2152 123 3 10 chr4 36950809 36951119 -165377228 - AluSx SINE Alu -4 308 1 200 172 52 17 chr4 36951138 36951196 -165377151 + A-rich Low_complexity Low_complexity 1 60 0 266 352 39 39 chr4 36952431 36952610 -165375737 - MLT1I LTR MaLR -191 218 40 411 231 150 6 chr4 36952648 36952849 -165375498 + HsTC2 DNA Tc2 1665 1898 0 24 32 0 0 chr4 36953354 36953385 -165374962 + AT_rich Low_complexity Low_complexity 1 31 0 2288 95 0 0 chr4 36953432 36953728 -165374619 - AluSg1 SINE Alu -13 296 1 347 356 0 15 chr4 36953839 36953971 -165374376 + MER5B DNA MER1_type 1 130 -48 339 318 47 8 chr4 36953980 36954109 -165374238 + MIR SINE MIR 47 180 -82 17699 31 0 0 chr4 36954245 36957126 -165371221 + L1PA3 LINE L1 3272 6152 -3 21 43 0 22 chr4 36957132 36957149 -165371198 + AT_rich Low_complexity Low_complexity 1 17 -28 2611 97 5 0 chr4 36957149 36957519 -165370828 + L1PA13 LINE L1 5787 6158 -5 21 43 0 22 chr4 36957519 36957547 -165370800 + AT_rich Low_complexity Low_complexity 17 45 0 2206 175 47 14 chr4 36958438 36958568 -165369779 + LOR1b LTR ERV1 2 126 -335 363 44 0 0 chr4 36958568 36958613 -165369734 + (GGAA)n Simple_repeat Simple_repeat 3 47 0 2206 175 47 14 chr4 36958613 36958927 -165369420 + LOR1b LTR ERV1 126 461 0 540 254 134 65 chr4 36960096 36960538 -165367809 - LTR40c LTR ERVL -55 410 1 259 261 0 29 chr4 36960741 36960810 -165367537 + GA-rich Low_complexity Low_complexity 4 70 0 26 30 0 0 chr4 36961376 36961409 -165366938 + AT_rich Low_complexity Low_complexity 1 33 0 2240 102 0 16 chr4 36961440 36961755 -165366592 - AluSp SINE Alu -3 310 1 3004 183 50 19 chr4 36961950 36962617 -165365730 - L1MA8 LINE L1 -5 7246 6560 1367 120 10 5 chr4 36962623 36962831 -165365516 - AluSg/x SINE Alu -23 289 81 402 70 0 99 chr4 36962831 36962902 -165365445 - AluSc SINE Alu -153 146 83 1566 209 78 5 chr4 36962921 36963593 -165364754 - L1MA8 LINE L1 -684 6567 5827 250 200 0 0 chr4 36963593 36963638 -165364709 - MSTB LTR MaLR 0 426 382 2461 241 103 10 chr4 36963638 36964497 -165363850 - L1MA8 LINE L1 -3032 4074 3177 3139 229 155 82 chr4 36964553 36965359 -165362988 - L1MA8 LINE L1 -5403 1627 881 2376 93 0 0 chr4 36965359 36965669 -165362678 - AluY SINE Alu -1 310 1 3139 229 155 82 chr4 36965669 36966379 -165361968 - L1MA8 LINE L1 -6149 881 1 2459 69 0 3 chr4 36966390 36966693 -165361654 - AluY SINE Alu -9 302 1 1249 245 47 18 chr4 36967128 36967555 -165360792 + L1ME1 LINE L1 5625 6074 -92 270 81 0 0 chr4 36967750 36967787 -165360560 - MLT2C2 LTR ERVL -11 453 417 237 232 0 0 chr4 36967813 36967869 -165360478 - L1MC4 LINE L1 -1339 6703 6648 242 146 0 0 chr4 36967870 36967918 -165360429 - LTR66 LTR ERVL -172 438 391 1528 153 68 74 chr4 36967943 36968309 -165360038 + THE1B LTR MaLR 1 364 0 * 2165 206 20 51 chr4 36968309 36968794 -165359553 - MLT2B2 LTR ERVL -45 470 1 28 79 0 0 chr4 36968915 36968978 -165359369 + AT_rich Low_complexity Low_complexity 1 63 0 273 360 82 50 chr4 36969298 36969701 -165358646 - L2 LINE L2 -602 2712 2297 1908 169 0 3 chr4 36971449 36971762 -165356585 - AluJb SINE Alu 0 312 1 207 278 98 30 chr4 36972519 36972652 -165355695 + MIR SINE MIR 65 206 -56 1678 327 85 25 chr4 36972859 36973932 -165354415 - L2 LINE L2 -6 3307 2177 598 316 197 28 chr4 36973994 36974522 -165353825 - L2 LINE L2 -1739 1575 959 271 207 12 24 chr4 36974541 36974623 -165353724 + T-rich Low_complexity Low_complexity 6 86 0 21 0 0 0 chr4 36975640 36975661 -165352686 + AT_rich Low_complexity Low_complexity 1 21 0 269 344 38 71 chr4 36975662 36975812 -165352535 + L3 LINE CR1 1371 1514 -63 1392 171 154 55 chr4 36975812 36976234 -165352113 - MLT2C2 LTR ERVL 0 464 1 269 344 38 71 chr4 36976234 36976295 -165352052 + L3 LINE CR1 1514 1575 -2 394 336 99 34 chr4 36976432 36976816 -165351531 + L2 LINE L2 2440 2848 -466 1029 283 95 42 chr4 36977906 36978380 -165349967 + LTR33A LTR ERVL 5 503 -20 652 334 90 68 chr4 36979361 36980290 -165348057 + L2 LINE L2 1614 2563 -751 689 209 0 20 chr4 36980290 36980438 -165347909 - MLT1A2 LTR MaLR -229 145 1 659 184 82 14 chr4 36981107 36981254 -165347093 + LTR47A LTR ERVL 280 436 -16 2104 129 3 0 chr4 36982691 36982994 -165345353 - AluSg SINE Alu 0 310 7 317 283 18 9 chr4 36983298 36983411 -165344936 + CT-rich Low_complexity Low_complexity 3 116 0 727 118 0 0 chr4 36983475 36983585 -165344762 + AluSg/x SINE Alu 189 298 -14 681 302 20 86 chr4 36983608 36984205 -165344142 - L2 LINE L2 -96 3217 2664 317 159 0 29 chr4 36984644 36984713 -165343634 + CT-rich Low_complexity Low_complexity 2 68 0 1404 149 0 93 chr4 36984721 36985023 -165343324 - AluJb SINE Alu -14 298 25 880 36 0 18 chr4 37035874 37035986 -165292361 + L1PA3 LINE L1 6046 6155 0 1966 138 0 0 chr4 37036463 37036745 -165291602 + AluSx SINE Alu 1 282 -30 23 0 0 0 chr4 37037221 37037244 -165291103 + AT_rich Low_complexity Low_complexity 1 23 0 4692 155 49 24 chr4 37037804 37038724 -165289623 + L1MA3 LINE L1 5361 6303 -2 21 36 0 0 chr4 37039153 37039181 -165289166 + AT_rich Low_complexity Low_complexity 1 28 0 1829 178 0 6 chr4 37039368 37039682 -165288665 - AluSx SINE Alu 0 312 1 24 53 0 0 chr4 37039782 37039820 -165288527 + AT_rich Low_complexity Low_complexity 1 38 0 1395 135 0 10 chr4 37039953 37040161 -165288186 - AluSx SINE Alu -106 206 1 24 53 0 0 chr4 37040261 37040299 -165288048 + AT_rich Low_complexity Low_complexity 1 38 0 23 0 0 0 chr4 37040326 37040349 -165287998 + AT_rich Low_complexity Low_complexity 1 23 0 245 200 57 14 chr4 37040662 37040675 -165287672 - Charlie2 DNA MER1_type -45 2817 2806 231 36 0 0 chr4 37040675 37040703 -165287644 + (TA)n Simple_repeat Simple_repeat 2 29 0 245 200 57 14 chr4 37040703 37040759 -165287588 - Charlie2 DNA MER1_type -56 2806 2745 322 228 0 44 chr4 37040806 37040920 -165287427 - Charlie2 DNA MER1_type -120 2742 2634 21 0 0 0 chr4 37042148 37042169 -165286178 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr4 37042923 37042951 -165285396 + AT_rich Low_complexity Low_complexity 1 28 0 1972 149 38 19 chr4 37043079 37043447 -165284900 - THE1C LTR MaLR 0 375 1 8641 151 56 10 chr4 37043447 37044956 -165283391 - THE1C-int LTR MaLR 0 1580 3 1878 159 74 6 chr4 37044958 37045309 -165283038 - THE1C LTR MaLR 0 375 1 2013 200 36 17 chr4 37045882 37046357 -165281990 + L1MB8 LINE L1 5693 6176 -2 202 228 38 13 chr4 37046628 37046707 -165281640 + (TAA)n Simple_repeat Simple_repeat 1 81 0 656 285 79 28 chr4 37046707 37046921 -165281426 - MIR SINE MIR -15 247 23 23 0 0 0 chr4 37047149 37047172 -165281175 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr4 37048000 37048028 -165280319 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr4 37048371 37048397 -165279950 + AT_rich Low_complexity Low_complexity 1 26 0 9974 213 30 35 chr4 37048630 37049519 -165278828 - ERVL-B1 LTR ERVL -3558 2206 1314 2186 79 0 3 chr4 37049519 37049809 -165278538 + AluY SINE Alu 1 289 -22 9974 213 30 35 chr4 37049809 37050446 -165277901 - ERVL-B1 LTR ERVL -4450 1314 675 306 0 0 0 chr4 37050446 37050480 -165277867 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 9974 213 30 35 chr4 37050480 37050574 -165277773 - ERVL-B1 LTR ERVL -5089 675 582 2238 191 19 9 chr4 37050574 37050994 -165277353 + MSTB LTR MaLR 3 426 0 9974 213 30 35 chr4 37050994 37051195 -165277152 - ERVL-B1 LTR ERVL -5182 582 382 1251 121 67 36 chr4 37051195 37051418 -165276929 - MER30 DNA MER1_type 0 230 1 9974 213 30 35 chr4 37051418 37051809 -165276538 - ERVL-B1 LTR ERVL -5382 382 2 423 229 29 19 chr4 37051874 37051979 -165276368 - MLT2B1 LTR ERVL -38 482 377 1170 182 5 0 chr4 37052002 37052211 -165276136 - MLT2B1 LTR ERVL -310 210 1 1332 231 17 0 chr4 37052215 37052487 -165275860 + MLT2B1 LTR ERVL 206 369 -28 210 189 0 19 chr4 37052497 37052550 -165275797 + (TAA)n Simple_repeat Simple_repeat 3 54 0 260 159 0 8 chr4 37052571 37052627 -165275720 + MLT2B2 LTR ERVL 467 515 0 180 185 43 0 chr4 37052681 37052773 -165275574 + (TTAA)n Simple_repeat Simple_repeat 1 96 0 1295 214 7 3 chr4 37054729 37055037 -165273310 + L1 LINE L1 2794 3102 -3044 397 233 25 17 chr4 37055038 37055158 -165273189 + L1MA5 LINE L1 13 133 -7432 * 5568 206 40 26 chr4 37055156 37056596 -165271751 + L1MA5 LINE L1 1985 3443 -4122 3454 221 83 7 chr4 37056612 37057480 -165270867 + L1P5 LINE L1 6 939 -5924 13566 207 24 6 chr4 37057581 37060880 -165267467 + L1P5 LINE L1 2802 6163 -704 3442 180 33 16 chr4 37060879 37061021 -165267326 + L1MA5 LINE L1 6020 6158 -1561 * 537 125 0 0 chr4 37061021 37061101 -165267246 - MADE1 DNA Mariner 0 80 1 3442 180 33 16 chr4 37061101 37062232 -165266115 + L1MA5 LINE L1 6158 7323 -396 32 26 0 0 chr4 37062344 37062383 -165265964 + AT_rich Low_complexity Low_complexity 1 39 0 519 288 92 43 chr4 37062964 37063275 -165265072 + MLT1G3 LTR MaLR 4 376 -179 241 204 57 68 chr4 37063306 37063394 -165264953 + MLT1G3 LTR MaLR 464 550 -5 23 0 0 0 chr4 37063739 37063762 -165264585 + AT_rich Low_complexity Low_complexity 1 23 0 198 340 69 28 chr4 37063831 37063975 -165264372 - L2 LINE L2 -453 2861 2712 1939 154 3 6 chr4 37064138 37064450 -165263897 + AluSx SINE Alu 1 311 -1 640 210 6 6 chr4 37064471 37064633 -165263714 + L1MA8 LINE L1 6128 6289 -2 735 339 45 15 chr4 37064641 37064974 -165263373 + L1MEc LINE L1 121 463 -5933 302 198 19 38 chr4 37064990 37065147 -165263200 + GA-rich Low_complexity Low_complexity 3 156 0 2239 197 30 12 chr4 37065165 37065663 -165262684 + L1MA5 LINE L1 4767 5273 -873 1735 173 42 11 chr4 37065789 37066148 -165262199 + L1MA5 LINE L1 5908 6277 -23 1636 156 0 0 chr4 37066237 37066480 -165261867 - MER1B DNA MER1_type -95 244 2 250 323 120 32 chr4 37066724 37066882 -165261465 - MIR SINE MIR -90 172 1 4851 87 12 27 chr4 37068457 37069190 -165259157 + LTR30 LTR ERV1 1 722 0 201 200 67 22 chr4 37069245 37069380 -165258967 + (TA)n Simple_repeat Simple_repeat 2 142 0 * 315 216 41 35 chr4 37069311 37069482 -165258865 + (TTATA)n Simple_repeat Simple_repeat 5 176 0 23 0 0 0 chr4 37071599 37071622 -165256725 + AT_rich Low_complexity Low_complexity 1 23 0 604 208 8 24 chr4 37071911 37072036 -165256311 + FLAM_A SINE Alu 2 124 -9 222 171 0 0 chr4 37072976 37073017 -165255330 + (TA)n Simple_repeat Simple_repeat 1 41 0 3548 147 47 0 chr4 37073501 37074125 -165254222 + MER39B LTR ERV1 1 653 0 1007 31 86 0 chr4 37074287 37074415 -165253932 - MER85 DNA T2_type 0 139 1 25 0 0 0 chr4 37078078 37078103 -165250244 + AT_rich Low_complexity Low_complexity 1 25 0 186 103 0 0 chr4 37078779 37078808 -165249539 + (TCTG)n Simple_repeat Simple_repeat 2 30 0 247 298 138 0 chr4 37078975 37079069 -165249278 - MIR3 SINE MIR -8 200 94 2150 284 68 38 chr4 37080117 37080984 -165247363 + L2 LINE L2 1728 2620 -694 233 388 118 6 chr4 37080986 37081156 -165247191 + L2 LINE L2 2778 2966 -348 698 353 39 12 chr4 37081156 37081414 -165246933 + MER45C DNA AcHobo 1 265 -688 488 232 167 5 chr4 37081476 37081703 -165246644 + MER45 DNA AcHobo 690 1581 0 198 370 31 76 chr4 37081703 37081914 -165246433 + L2 LINE L2 2958 3160 -153 243 0 0 0 chr4 37081914 37081941 -165246406 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 198 370 31 76 chr4 37081941 37081953 -165246394 + L2 LINE L2 3160 3171 -142 212 387 0 9 chr4 37082877 37082983 -165245364 - L2 LINE L2 0 3272 3168 2700 231 33 26 chr4 37083799 37084457 -165243890 - MER76 LTR ERV -4 684 22 312 335 149 60 chr4 37084742 37085378 -165242969 + L2 LINE L2 2283 2975 -339 1607 126 0 63 chr4 37085448 37085717 -165242630 - AluSx SINE Alu -53 259 8 282 329 29 65 chr4 37086859 37087029 -165241318 + MIR3 SINE MIR 39 202 -6 216 0 0 0 chr4 37087118 37087142 -165241205 + (TG)n Simple_repeat Simple_repeat 1 24 0 26 0 0 0 chr4 37087354 37087380 -165240967 + AT_rich Low_complexity Low_complexity 1 26 0 1271 259 52 22 chr4 37087486 37087888 -165240459 - MLT1D LTR MaLR -1 504 91 465 82 0 0 chr4 37087888 37087969 -165240378 + Alu SINE Alu 222 302 0 4950 221 33 23 chr4 37087969 37089405 -165238942 - L1 LINE L1 -1737 4409 2959 2543 244 28 25 chr4 37089404 37089769 -165238578 + L1PB4 LINE L1 4600 4963 -1183 * 1913 80 48 51 chr4 37089769 37090080 -165238267 + AluY SINE Alu 1 310 -1 2543 244 28 25 chr4 37090080 37090500 -165237847 + L1PB4 LINE L1 4963 5387 -759 2517 147 35 35 chr4 37090506 37090970 -165237377 + L1PB4 LINE L1 5490 5953 -203 301 64 21 0 chr4 37090970 37091009 -165237338 + L1PA16 LINE L1 6103 6150 -16 1838 180 0 72 chr4 37091041 37091485 -165236862 + L1M3 LINE L1 5387 5798 -536 376 233 0 80 chr4 37091529 37091678 -165236669 + L1MB1 LINE L1 5681 5818 -494 1925 141 28 14 chr4 37091869 37092230 -165236117 + L1MB1 LINE L1 5803 6168 0 297 322 51 0 chr4 37092246 37092364 -165235983 - L2 LINE L2 -1898 1416 1293 27 96 0 0 chr4 37092414 37092497 -165235850 + AT_rich Low_complexity Low_complexity 1 83 0 350 283 117 28 chr4 37092798 37092943 -165235404 + MIR SINE MIR 75 232 -30 897 320 49 31 chr4 37093191 37093703 -165234644 - MLT1H1 LTR MaLR -5 550 30 268 323 73 0 chr4 37093944 37094068 -165234279 - L2 LINE L2 -6 3307 3175 806 277 28 5 chr4 37094155 37094368 -165233979 + MER58A DNA MER1_type 2 219 -5 875 214 133 76 chr4 37095225 37095594 -165232753 + MER57A LTR ERV1 14 403 0 189 121 0 0 chr4 37095773 37095806 -165232541 + (CA)n Simple_repeat Simple_repeat 2 34 0 2171 87 7 0 chr4 37097488 37097776 -165230571 + AluSc SINE Alu 1 290 -19 380 356 36 24 chr4 37098060 37098310 -165230037 + L1ME3A LINE L1 4981 5233 -913 1124 324 61 9 chr4 37098325 37098968 -165229379 + L1ME3A LINE L1 5321 5996 -174 22 0 0 0 chr4 37099423 37099445 -165228902 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr4 37100697 37100726 -165227621 + AT_rich Low_complexity Low_complexity 1 29 0 24 32 0 0 chr4 37100899 37100930 -165227417 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr4 37101893 37101921 -165226426 + AT_rich Low_complexity Low_complexity 1 28 0 21 71 0 0 chr4 37102546 37102588 -165225759 + AT_rich Low_complexity Low_complexity 1 42 0 386 339 8 8 chr4 37102775 37102905 -165225442 + L2 LINE L2 3179 3308 -5 855 194 27 70 chr4 37103059 37103317 -165225030 + LTR1B LTR ERV1 1 247 -579 1272 184 141 72 chr4 37103344 37103790 -165224557 + LTR1B LTR ERV1 350 826 0 686 316 14 47 chr4 37103791 37104001 -165224346 + LTR16A LTR ERVL 152 351 -99 3110 127 16 18 chr4 37104001 37104515 -165223832 - LTR10D LTR ERV1 0 513 1 686 316 14 47 chr4 37104515 37104601 -165223746 + LTR16A LTR ERVL 351 438 -12 428 369 97 4 chr4 37104936 37105286 -165223061 + L1M4 LINE L1 3753 4181 -1965 26 0 0 0 chr4 37105286 37105312 -165223035 + AT_rich Low_complexity Low_complexity 1 26 0 428 369 97 4 chr4 37105312 37105400 -165222947 + L1M4 LINE L1 4181 4259 -1887 24 0 0 0 chr4 37105577 37105601 -165222746 + AT_rich Low_complexity Low_complexity 1 24 0 1217 128 5 20 chr4 37107305 37107500 -165220847 + MER4B LTR ERV1 419 610 0 2129 64 7 17 chr4 37108039 37108335 -165220012 + AluY SINE Alu 4 296 -15 207 0 0 0 chr4 37108738 37108761 -165219586 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 934 91 0 21 chr4 37108843 37108986 -165219361 - L1MA3 LINE L1 0 6305 6166 446 246 29 82 chr4 37109731 37109902 -165218445 - MER63A DNA MER1_type -14 196 35 24 0 0 0 chr4 37110117 37110141 -165218206 + AT_rich Low_complexity Low_complexity 1 24 0 2815 185 13 43 chr4 37110300 37110931 -165217416 + LTR9 LTR ERV1 1 612 0 24 32 0 0 chr4 37111119 37111150 -165217197 + AT_rich Low_complexity Low_complexity 1 31 0 1153 191 43 119 chr4 37112460 37112947 -165215400 - LTR7 LTR ERV1 0 450 1 30 27 0 0 chr4 37112980 37113017 -165215330 + AT_rich Low_complexity Low_complexity 1 37 0 3337 116 56 0 chr4 37113176 37113693 -165214654 + MER41A LTR ERV1 1 546 -8 922 239 81 36 chr4 37113744 37114005 -165214342 - MER84 LTR ERVI -33 474 180 2273 110 3 0 chr4 37114005 37114313 -165214034 + AluSp SINE Alu 1 309 -4 922 239 81 36 chr4 37114313 37114502 -165213845 - MER84 LTR ERVI -327 180 1 253 300 50 10 chr4 37114569 37114669 -165213678 - LTR65 LTR ERV1 -6 663 560 456 197 106 28 chr4 37114896 37115038 -165213309 - LTR65 LTR ERV1 -499 170 18 336 221 69 69 chr4 37115218 37115349 -165212998 - L1M4 LINE L1 -846 5300 5170 25 0 0 0 chr4 37115528 37115553 -165212794 + AT_rich Low_complexity Low_complexity 1 25 0 21 71 0 0 chr4 37115636 37115678 -165212669 + AT_rich Low_complexity Low_complexity 1 42 0 26 0 0 0 chr4 37115845 37115871 -165212476 + AT_rich Low_complexity Low_complexity 1 26 0 355 331 103 25 chr4 37115883 37116125 -165212222 + L1ME LINE L1 5424 5684 -437 23 0 0 0 chr4 37116222 37116245 -165212102 + AT_rich Low_complexity Low_complexity 1 23 0 464 269 66 105 chr4 37116250 37116507 -165211840 - MIR SINE MIR 0 262 16 22 35 0 0 chr4 37116724 37116753 -165211594 + AT_rich Low_complexity Low_complexity 1 29 0 1134 225 34 129 chr4 37117185 37117220 -165211127 - MLT1E LTR MaLR 0 593 556 2233 107 0 3 chr4 37117220 37117519 -165210828 + AluY SINE Alu 1 298 -13 1134 225 34 129 chr4 37117519 37117961 -165210386 - MLT1E LTR MaLR -37 556 168 2210 101 34 0 chr4 37117961 37118257 -165210090 + AluY SINE Alu 1 306 -5 1134 225 34 129 chr4 37118257 37118306 -165210041 - MLT1E LTR MaLR -425 168 116 561 320 0 6 chr4 37118316 37118472 -165209875 - MLT1E LTR MaLR -431 162 8 1511 183 67 59 chr4 37118883 37119255 -165209092 - THE1C LTR MaLR 0 375 1 6674 153 61 54 chr4 37119255 37120588 -165207759 - THE1C-int LTR MaLR 0 1646 371 2510 71 0 0 chr4 37120588 37120897 -165207450 - AluY SINE Alu -2 309 1 6674 153 61 54 chr4 37120897 37121269 -165207078 - THE1C-int LTR MaLR -1275 371 3 1172 222 68 52 chr4 37121271 37121640 -165206707 - THE1C LTR MaLR 0 375 1 2108 149 0 0 chr4 37122122 37122431 -165205916 + AluSx SINE Alu 1 309 -3 213 39 0 0 chr4 37122723 37122749 -165205598 + (TC)n Simple_repeat Simple_repeat 1 26 0 22 70 0 0 chr4 37123118 37123161 -165205186 + AT_rich Low_complexity Low_complexity 1 43 0 203 184 0 0 chr4 37123765 37123803 -165204544 + (CATA)n Simple_repeat Simple_repeat 3 40 0 2063 126 0 13 chr4 37124001 37124302 -165204045 - AluSx SINE Alu -15 297 1 516 292 145 46 chr4 37124852 37125485 -165202862 + L1MEc LINE L1 1061 1691 -893 1139 294 91 28 chr4 37125831 37126690 -165201657 + L1MEc LINE L1 2145 3133 -3013 795 248 58 0 chr4 37126690 37126896 -165201451 + MER58A DNA MER1_type 4 221 -3 1139 294 91 28 chr4 37126896 37127486 -165200861 + L1MEc LINE L1 3133 3685 -2461 631 304 72 15 chr4 37127553 37127954 -165200393 + L1MEc LINE L1 3777 4200 -1946 222 329 0 0 chr4 37127977 37128053 -165200294 + (TATATG)n Simple_repeat Simple_repeat 3 78 0 906 190 156 80 chr4 37128343 37128606 -165199741 + MLT1B LTR MaLR 104 386 -4 23 54 0 0 chr4 37131136 37131173 -165197174 + AT_rich Low_complexity Low_complexity 1 37 0 3248 118 47 75 chr4 37131359 37131976 -165196371 - MER4A LTR ERV1 0 600 1 23 0 0 0 chr4 37132312 37132335 -165196012 + AT_rich Low_complexity Low_complexity 1 23 0 2101 126 7 13 chr4 37132634 37132943 -165195404 - AluSx SINE Alu -5 307 1 1478 224 25 13 chr4 37133423 37133740 -165194607 - MLT2B2 LTR ERVL -194 321 1 186 43 0 0 chr4 37133754 37133777 -165194570 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 1138 101 53 0 chr4 37133828 37133901 -165194446 - MER30B DNA MER1_type -6 184 116 216 0 0 0 chr4 37133901 37133925 -165194422 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1138 101 53 0 chr4 37133925 37134020 -165194327 - MER30B DNA MER1_type -74 116 7 5611 115 26 15 chr4 37134144 37135051 -165193296 - L1MA1 LINE L1 -1 6301 5385 832 106 206 0 chr4 37135051 37135192 -165193155 - AluSc SINE Alu -2 307 138 216 0 0 0 chr4 37135194 37135218 -165193129 + (TA)n Simple_repeat Simple_repeat 2 25 0 2216 105 3 0 chr4 37135218 37135513 -165192834 - AluSp SINE Alu -16 297 2 3245 182 2 2 chr4 37135520 37136142 -165192205 - L1MA1 LINE L1 -758 5388 4767 806 134 17 24 chr4 37136207 37136563 -165191784 + CT-rich Low_complexity Low_complexity 1 353 0 790 334 46 14 chr4 37136563 37136931 -165191416 - L1MEc LINE L1 -5896 500 121 552 178 75 0 chr4 37136952 37137098 -165191249 - L1MA8 LINE L1 -10 6281 6125 186 43 0 0 chr4 37137107 37137130 -165191217 + (TA)n Simple_repeat Simple_repeat 2 24 0 543 321 110 16 chr4 37137933 37138251 -165190096 - MLT1G1 LTR MaLR -169 426 79 26 0 0 0 chr4 37138842 37138868 -165189479 + AT_rich Low_complexity Low_complexity 1 26 0 22 80 0 0 chr4 37139392 37139442 -165188905 + AT_rich Low_complexity Low_complexity 1 50 0 22 56 0 0 chr4 37140523 37140559 -165187788 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr4 37140812 37140833 -165187514 + AT_rich Low_complexity Low_complexity 1 21 0 225 308 11 33 chr4 37140959 37141050 -165187297 - MLT1K LTR MaLR -181 407 319 210 233 0 0 chr4 37142307 37142367 -165185980 + (TA)n Simple_repeat Simple_repeat 2 61 0 203 158 15 53 chr4 37142445 37142578 -165185769 + (TATAA)n Simple_repeat Simple_repeat 3 130 0 31 44 0 0 chr4 37142587 37142632 -165185715 + AT_rich Low_complexity Low_complexity 1 45 0 236 369 11 108 chr4 37142928 37143104 -165185243 + L2 LINE L2 3020 3178 -94 456 51 0 0 chr4 37143607 37143666 -165184681 + (TA)n Simple_repeat Simple_repeat 2 60 0 2437 77 0 3 chr4 37143781 37144091 -165184256 + AluY SINE Alu 1 309 -2 191 186 0 34 chr4 37144100 37144159 -165184188 + (TATG)n Simple_repeat Simple_repeat 4 60 0 2511 121 6 3 chr4 37144203 37144566 -165183781 - THE1B LTR MaLR 0 364 1 9138 119 47 59 chr4 37144566 37146165 -165182182 - THE1B-int LTR MaLR 0 1580 1 2475 106 14 3 chr4 37146165 37146525 -165181822 - THE1B LTR MaLR 0 364 1 4132 333 127 27 chr4 37146826 37148388 -165179959 + L2 LINE L2 32 1437 -1877 1753 5 0 5 chr4 37148388 37148584 -165179763 - AluYb8 SINE Alu -14 304 110 4132 333 127 27 chr4 37148584 37149371 -165178976 + L2 LINE L2 1437 2649 -665 1665 194 0 0 chr4 37149371 37149655 -165178692 - AluJo SINE Alu -28 284 1 4132 333 127 27 chr4 37149655 37149814 -165178533 + L2 LINE L2 2649 2791 -523 1394 206 57 136 chr4 37149814 37150372 -165177975 - MER67C LTR ERV1 0 514 1 585 330 87 43 chr4 37150372 37150869 -165177478 + L2 LINE L2 2788 3313 0 366 338 113 0 chr4 37151034 37151238 -165177109 - MIR SINE MIR -13 249 23 389 216 12 12 chr4 37151383 37151545 -165176802 + (TA)n Simple_repeat Simple_repeat 1 162 0 23 0 0 0 chr4 37151981 37152004 -165176343 + AT_rich Low_complexity Low_complexity 1 23 0 1461 227 77 3 chr4 37152861 37153214 -165175133 - L1MC2 LINE L1 -26 6318 5940 1021 346 22 42 chr4 37153775 37154368 -165173979 + L1PA16 LINE L1 788 1368 -6206 4491 248 59 15 chr4 37154824 37154889 -165173458 + L1PA16 LINE L1 2220 2281 -5303 309 26 0 0 chr4 37154889 37154927 -165173420 + (CA)n Simple_repeat Simple_repeat 2 39 0 4491 248 59 15 chr4 37154927 37156882 -165171465 + L1PA16 LINE L1 2281 4339 -3245 5214 180 27 21 chr4 37156910 37158425 -165169922 + L1PA16 LINE L1 5979 7509 -95 1772 230 49 54 chr4 37158425 37158978 -165169369 + MLT2B3 LTR ERVL 5 554 0 5214 180 27 21 chr4 37158978 37159058 -165169289 + L1PA16 LINE L1 7509 7587 -17 22 0 0 0 chr4 37159213 37159235 -165169112 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chr4 37159275 37159311 -165169036 + AT_rich Low_complexity Low_complexity 1 36 0 25 83 0 0 chr4 37159356 37159416 -165168931 + AT_rich Low_complexity Low_complexity 1 60 0 249 259 0 0 chr4 37159518 37159576 -165168771 + L1ME3A LINE L1 5828 5885 -285 582 259 157 21 chr4 37159588 37159913 -165168434 - LTR37A LTR ERV1 -8 418 50 324 191 67 0 chr4 37160124 37160213 -165168134 + MLT1F LTR MaLR 440 534 -8 443 253 38 27 chr4 37161360 37161546 -165166801 + Charlie1 DNA MER1_type 2570 2757 -4 272 242 70 96 chr4 37161669 37162053 -165166294 - MER31-int LTR ERV1 -2858 2078 1705 1006 236 43 83 chr4 37162199 37162598 -165165749 - MLT1B LTR MaLR 0 390 8 529 222 72 12 chr4 37162634 37162801 -165165546 - LTR37A LTR ERV1 -46 380 204 419 282 166 17 chr4 37162983 37163164 -165165183 + L1ME3A LINE L1 5954 6161 -9 446 237 0 103 chr4 37163186 37163259 -165165088 + L1M4 LINE L1 2217 2296 -3850 775 134 16 16 chr4 37163259 37163386 -165164961 + FLAM_C SINE Alu 2 128 -5 446 237 0 103 chr4 37163386 37163506 -165164841 + L1M4 LINE L1 2296 2390 -3756 1839 166 76 15 chr4 37164785 37165128 -165163219 - THE1B LTR MaLR 0 364 1 8381 135 14 25 chr4 37165128 37166291 -165162056 - THE1B-int LTR MaLR 0 1580 405 996 88 0 0 chr4 37166291 37166416 -165161931 - AluY SINE Alu -180 131 7 694 227 68 0 chr4 37166416 37166579 -165161768 + FAM SINE Alu 2 175 0 8381 135 14 25 chr4 37166579 37166999 -165161348 - THE1B-int LTR MaLR -1173 407 7 2035 141 77 15 chr4 37166999 37167339 -165161008 - THE1B LTR MaLR -3 361 1 1736 192 0 10 chr4 37167990 37168303 -165160044 + AluJo SINE Alu 2 311 -1 23 0 0 0 chr4 37168307 37168330 -165160017 + AT_rich Low_complexity Low_complexity 1 23 0 186 314 0 0 chr4 37168360 37168411 -165159936 - L2 LINE L2 0 3313 3263 849 111 78 26 chr4 37169319 37169472 -165158875 - L1MA1 LINE L1 -35 6267 6107 21 36 0 0 chr4 37170196 37170224 -165158123 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr4 37170334 37170356 -165157991 + AT_rich Low_complexity Low_complexity 1 22 0 369 58 0 0 chr4 37170556 37170608 -165157739 + (TATG)n Simple_repeat Simple_repeat 2 53 0 515 83 2 7 chr4 37171071 37171151 -165157196 + L1PB1 LINE L1 5922 5999 -155 477 105 13 0 chr4 37171154 37171230 -165157117 - L1P LINE L1 -1430 4716 4640 1037 121 0 0 chr4 37171230 37171383 -165156964 + L1PB1 LINE L1 5993 6149 -2 676 258 107 9 chr4 37171555 37171780 -165156567 + LTR16A LTR ERVL 169 415 -35 21 0 0 0 chr4 37172063 37172084 -165156263 + AT_rich Low_complexity Low_complexity 1 21 0 227 337 0 0 chr4 37172478 37172564 -165155783 + (CATA)n Simple_repeat Simple_repeat 3 88 0 360 317 44 11 chr4 37172652 37172832 -165155515 + MER105 DNA DNA 4 189 -15 812 239 21 13 chr4 37173117 37173355 -165154992 - L1MCa LINE L1 -1280 4935 4696 290 234 191 14 chr4 37173368 37173509 -165154838 - MLT1D LTR MaLR -259 246 81 2793 288 66 12 chr4 37173604 37174854 -165153493 - L1MCa LINE L1 -2520 3695 2379 225 0 0 0 chr4 37174906 37174931 -165153416 + (TA)n Simple_repeat Simple_repeat 1 25 0 1277 266 128 27 chr4 37174941 37175924 -165152423 - L1MCa LINE L1 -3950 2265 1365 322 203 13 13 chr4 37176254 37176333 -165152014 + L1MC1 LINE L1 6249 6327 -6 6524 72 11 0 chr4 37176661 37178164 -165150183 - L1PA7 LINE L1 -3 6151 4631 380 129 0 14 chr4 37179319 37179389 -165148958 + (TC)n Simple_repeat Simple_repeat 2 70 0 987 147 6 6 chr4 37179612 37179768 -165148579 - AluJ SINE Alu -39 273 118 23 0 0 0 chr4 37180039 37180062 -165148285 + AT_rich Low_complexity Low_complexity 1 23 0 1022 152 39 6 chr4 37180786 37180964 -165147383 - L1MA9 LINE L1 -74 6238 6055 29 28 0 0 chr4 37181504 37181540 -165146807 + AT_rich Low_complexity Low_complexity 1 36 0 196 286 100 43 chr4 37181685 37181825 -165146522 + MIR3 SINE MIR 30 177 -31 26 82 0 0 chr4 37181851 37181912 -165146435 + AT_rich Low_complexity Low_complexity 1 61 0 22 35 0 0 chr4 37182235 37182264 -165146083 + AT_rich Low_complexity Low_complexity 1 29 0 24 32 0 0 chr4 37182662 37182693 -165145654 + AT_rich Low_complexity Low_complexity 1 31 0 426 265 117 13 chr4 37183050 37183280 -165145067 + L1ME3A LINE L1 5628 5881 -289 1567 26 21 0 chr4 37183341 37183535 -165144812 - L1PA4 LINE L1 -4 6151 5954 863 117 8 0 chr4 37184173 37184293 -165144054 - AluJ SINE Alu -191 121 1 362 306 56 67 chr4 37185346 37185526 -165142821 - L2 LINE L2 -18 3295 3118 21 57 0 0 chr4 37186945 37186980 -165141367 + AT_rich Low_complexity Low_complexity 1 35 0 211 281 115 42 chr4 37187041 37187137 -165141210 - L2 LINE L2 -18 3295 3193 1184 133 5 5 chr4 37187586 37187782 -165140565 + L1MA1 LINE L1 6099 6294 -8 33 0 0 0 chr4 37187782 37187815 -165140532 + AT_rich Low_complexity Low_complexity 1 33 0 386 169 32 13 chr4 37187890 37188044 -165140303 + (TA)n Simple_repeat Simple_repeat 1 157 0 23 0 0 0 chr4 37188070 37188093 -165140254 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr4 37188118 37188139 -165140208 + AT_rich Low_complexity Low_complexity 1 21 0 1646 227 117 14 chr4 37188198 37188696 -165139651 - L1ME1 LINE L1 -165 6001 5453 22 0 0 0 chr4 37188853 37188875 -165139472 + AT_rich Low_complexity Low_complexity 1 22 0 318 333 40 0 chr4 37189652 37189751 -165138596 - MER5A DNA MER1_type -78 111 9 383 325 48 0 chr4 37189758 37189884 -165138463 + L2 LINE L2 1557 1688 -1626 1712 343 102 24 chr4 37189884 37191124 -165137223 + L2 LINE L2 1838 3177 -136 2644 33 0 0 chr4 37191136 37191440 -165136907 - AluY SINE Alu -7 304 1 280 170 0 0 chr4 37191466 37191519 -165136828 - 5S rRNA rRNA -20 101 49 379 207 11 0 chr4 37191519 37191606 -165136741 + L1PA16 LINE L1 6078 6165 -1 21 0 0 0 chr4 37191680 37191701 -165136646 + AT_rich Low_complexity Low_complexity 1 21 0 222 91 0 0 chr4 37192107 37192140 -165136207 + (TG)n Simple_repeat Simple_repeat 1 33 0 22 0 0 0 chr4 37192616 37192638 -165135709 + AT_rich Low_complexity Low_complexity 1 22 0 2522 247 10 82 chr4 37193128 37193962 -165134385 + L1M4 LINE L1 4 777 -6253 227 343 0 29 chr4 37193982 37194087 -165134260 + L1M3e LINE L1 1579 1680 -5350 1606 246 78 25 chr4 37194185 37194661 -165133686 + MLT1D LTR MaLR 5 505 0 560 312 51 38 chr4 37194791 37195028 -165133319 - MIR SINE MIR -5 257 18 270 0 0 0 chr4 37195533 37195563 -165132784 + (CA)n Simple_repeat Simple_repeat 2 31 0 1232 226 52 38 chr4 37197203 37197570 -165130777 + MLT1A2 LTR MaLR 1 372 -2 1894 126 0 7 chr4 37197826 37198103 -165130244 - AluSq SINE Alu -38 275 1 2149 118 7 7 chr4 37198718 37199023 -165129324 - AluSp SINE Alu -8 305 1 23 78 0 0 chr4 37199074 37199125 -165129222 + AT_rich Low_complexity Low_complexity 1 51 0 339 65 0 0 chr4 37199232 37199278 -165129069 + (TG)n Simple_repeat Simple_repeat 1 46 0 1216 247 21 59 chr4 37199313 37199702 -165128645 + MLT1A2 LTR MaLR 1 374 0 1421 195 15 0 chr4 37200207 37200479 -165127868 - Tigger3(Golem) DNA MER2_type -13 3016 2741 2290 182 5 21 chr4 37200487 37200922 -165127425 + MSTC LTR MaLR 1 428 0 4613 170 16 7 chr4 37200922 37201811 -165126536 + L1MA6 LINE L1 5404 6300 0 285 268 0 0 chr4 37204172 37204228 -165124119 - L2 LINE L2 -328 2985 2930 302 293 71 0 chr4 37204660 37204759 -165123588 - L1MC4 LINE L1 -1323 6719 6614 * 336 261 0 22 chr4 37204675 37204767 -165123580 + L1MC4 LINE L1 6614 6703 -1339 327 104 0 0 chr4 37204767 37204815 -165123532 + (TG)n Simple_repeat Simple_repeat 2 49 0 252 0 0 0 chr4 37204815 37204843 -165123504 + (TA)n Simple_repeat Simple_repeat 2 29 0 2279 250 51 64 chr4 37204854 37205637 -165122710 + L1M4 LINE L1 772 1544 -5460 2062 108 7 10 chr4 37206273 37206578 -165121769 + AluSq SINE Alu 1 304 -9 395 93 0 0 chr4 37207270 37207324 -165121023 - L1MA2 LINE L1 -183 6121 6068 598 191 0 0 chr4 37207334 37207449 -165120898 + L1MA2 LINE L1 6187 6301 -3 726 319 162 26 chr4 37210748 37211440 -165116907 - L2 LINE L2 -5 3308 2515 368 318 74 56 chr4 37211564 37211901 -165116446 + L2 LINE L2 2935 3277 -36 8215 154 3 26 chr4 37212154 37213689 -165114658 + L1PA8 LINE L1 890 2388 -3758 777 51 0 0 chr4 37213689 37213785 -165114562 + L1PA5 LINE L1 6053 6150 -4 * 19865 107 20 1 chr4 37213774 37217533 -165110814 + L1PA8 LINE L1 2374 6172 0 305 109 0 0 chr4 37217754 37217800 -165110547 + MADE1 DNA Mariner 1 46 -34 268 292 0 31 chr4 37217905 37218001 -165110346 - L1ME2 LINE L1 -9 6155 6063 1826 191 0 21 chr4 37218141 37218481 -165109866 + MER1B DNA MER1_type 1 333 -4 338 369 68 9 chr4 37219360 37219582 -165108765 + L2 LINE L2 2271 2505 -809 278 307 220 32 chr4 37219993 37220211 -165108136 - MIR SINE MIR -2 260 2 201 250 19 0 chr4 37220439 37220491 -165107856 + MIR SINE MIR 79 131 -131 436 175 10 10 chr4 37220673 37220776 -165107571 + CT-rich Low_complexity Low_complexity 2 104 0 1554 245 116 22 chr4 37220928 37221548 -165106799 - L1MB7 LINE L1 -5 6677 5960 2302 156 41 0 chr4 37221556 37221967 -165106380 - MSTA LTR MaLR 0 428 1 2474 120 2 52 chr4 37221967 37222391 -165105956 - MSTA-int LTR MaLR 0 1651 1249 1480 219 20 69 chr4 37222391 37222725 -165105622 - L1MB7 LINE L1 -713 5959 5692 2208 84 0 28 chr4 37222725 37223045 -165105302 - AluY SINE Alu 0 311 1 1480 219 20 69 chr4 37223045 37223394 -165104953 - L1MB7 LINE L1 -980 5692 5328 451 248 64 94 chr4 37223416 37223691 -165104656 - L1MB7 LINE L1 -3695 2949 2667 3072 224 6 3 chr4 37223691 37224370 -165103977 - L1MB3 LINE L1 -2 6181 5501 451 248 64 94 chr4 37224370 37224713 -165103634 - L1MB7 LINE L1 -3977 2667 2358 1045 280 147 17 chr4 37224802 37225442 -165102905 - L1MB7 LINE L1 -4543 2103 1381 * 4906 148 30 4 chr4 37225424 37226269 -165102078 - L1PA16 LINE L1 -2 6164 5298 1146 234 77 12 chr4 37226265 37226693 -165101654 - L1MB7 LINE L1 -5133 1409 954 * 746 52 0 0 chr4 37226699 37226796 -165101551 - L1PA3 LINE L1 0 6155 6059 1317 32 6 0 chr4 37226796 37226954 -165101393 + L1PA3 LINE L1 5785 5943 -212 * 3324 239 38 29 chr4 37226952 37227894 -165100453 - L1MB7 LINE L1 -5576 966 16 922 198 6 17 chr4 37227918 37228090 -165100257 - MER20 DNA MER1_type -49 170 1 2264 99 3 0 chr4 37228379 37228673 -165099674 - AluSp SINE Alu -15 298 4 427 161 50 44 chr4 37229088 37229202 -165099145 + MER61E LTR ERV1 1 118 -484 673 226 29 18 chr4 37229245 37229474 -165098873 + MER61D LTR ERV1 343 491 -10 28 107 0 0 chr4 37229710 37229822 -165098525 + AT_rich Low_complexity Low_complexity 1 112 0 21 36 0 0 chr4 37229972 37230000 -165098347 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr4 37230007 37230035 -165098312 + AT_rich Low_complexity Low_complexity 1 28 0 25 65 0 0 chr4 37230319 37230365 -165097982 + AT_rich Low_complexity Low_complexity 1 46 0 348 346 47 23 chr4 37230721 37230935 -165097412 + MIR SINE MIR 44 262 0 36 0 0 0 chr4 37230937 37230973 -165097374 + AT_rich Low_complexity Low_complexity 1 36 0 37 76 0 0 chr4 37231163 37231242 -165097105 + AT_rich Low_complexity Low_complexity 1 79 0 23 0 0 0 chr4 37231286 37231309 -165097038 + AT_rich Low_complexity Low_complexity 1 23 0 1959 207 49 2 chr4 37231482 37231888 -165096459 + MSTB LTR MaLR 2 426 0 494 289 111 14 chr4 37232234 37232442 -165095905 - MIR SINE MIR -6 256 29 266 289 83 16 chr4 37233414 37233535 -165094812 - MIR SINE MIR -48 214 86 24 0 0 0 chr4 37233789 37233813 -165094534 + AT_rich Low_complexity Low_complexity 1 24 0 1703 100 64 46 chr4 37234162 37234471 -165093876 + AluSg SINE Alu 1 314 0 27 29 0 0 chr4 37235158 37235192 -165093155 + AT_rich Low_complexity Low_complexity 1 34 0 4554 174 45 21 chr4 37235202 37236071 -165092276 - L1MA7 LINE L1 0 6291 5388 2375 123 17 3 chr4 37236071 37236430 -165091917 + THE1B LTR MaLR 1 364 0 4554 174 45 21 chr4 37236430 37236691 -165091656 - L1MA7 LINE L1 -903 5388 5135 21 100 0 0 chr4 37237846 37237916 -165090431 + AT_rich Low_complexity Low_complexity 1 70 0 1268 183 80 4 chr4 37238481 37238744 -165089603 + L1MC1 LINE L1 6046 6328 -5 2658 287 83 44 chr4 37238745 37239495 -165088852 + L1MC4a LINE L1 1062 1781 -4434 247 65 43 0 chr4 37239495 37239541 -165088806 + (TA)n Simple_repeat Simple_repeat 1 48 0 740 172 16 0 chr4 37239547 37239675 -165088672 + L1PA16 LINE L1 6026 6155 -11 2658 287 83 44 chr4 37239675 37241723 -165086624 + L1MC4a LINE L1 1785 3968 -2247 183 80 0 0 chr4 37241723 37241748 -165086599 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2658 287 83 44 chr4 37241748 37241919 -165086428 + L1MC4a LINE L1 3968 4131 -2084 183 80 0 0 chr4 37241944 37241969 -165086378 + (TATATG)n Simple_repeat Simple_repeat 4 28 0 351 294 16 0 chr4 37241983 37242109 -165086238 - MER33 DNA MER1_type -184 140 13 23 0 0 0 chr4 37243657 37243680 -165084667 + AT_rich Low_complexity Low_complexity 1 23 0 404 101 130 0 chr4 37244235 37244304 -165084043 + MADE1 DNA Mariner 3 80 0 1844 258 65 4 chr4 37244687 37245207 -165083140 - MLT1E2 LTR MaLR -28 598 47 880 181 0 0 chr4 37245322 37245471 -165082876 + FRAM SINE Alu 2 150 -26 2257 144 16 0 chr4 37245649 37246018 -165082329 + THE1C LTR MaLR 1 375 0 21 0 0 0 chr4 37246370 37246391 -165081956 + AT_rich Low_complexity Low_complexity 1 21 0 460 360 56 33 chr4 37246563 37247213 -165081134 + L1MC4a LINE L1 5324 5660 -651 904 306 45 62 chr4 37247946 37247987 -165080360 + L1PB4 LINE L1 2 42 -6807 1713 159 78 26 chr4 37247987 37248333 -165080014 + THE1B LTR MaLR 1 364 0 10269 122 17 5 chr4 37248333 37249894 -165078453 + THE1B-int LTR MaLR 1 1580 0 1891 153 44 33 chr4 37249894 37250254 -165078093 + THE1B LTR MaLR 1 364 0 904 306 45 62 chr4 37250254 37250948 -165077399 + L1PB4 LINE L1 39 726 -6123 326 346 79 65 chr4 37251066 37251280 -165077067 + L1PB4 LINE L1 787 1003 -5847 433 233 8 25 chr4 37251299 37251419 -165076928 + L1PB4 LINE L1 1408 1525 -5325 11597 225 28 35 chr4 37251424 37254742 -165073605 + L1PB4 LINE L1 1863 5200 -1659 1651 157 80 0 chr4 37254742 37255028 -165073319 + AluSx SINE Alu 1 309 -3 11597 225 28 35 chr4 37255028 37255339 -165073008 + L1PB4 LINE L1 5200 5511 -1348 1579 196 21 0 chr4 37255339 37255630 -165072717 + AluJo SINE Alu 3 299 -13 11597 225 28 35 chr4 37255630 37257005 -165071342 + L1PB4 LINE L1 5511 6858 -1 302 272 89 30 chr4 37257060 37257229 -165071118 + L1ME LINE L1 5539 5717 -404 23 54 0 0 chr4 37257465 37257502 -165070845 + AT_rich Low_complexity Low_complexity 1 37 0 26 50 0 0 chr4 37258841 37258881 -165069466 + AT_rich Low_complexity Low_complexity 1 40 0 554 321 34 10 chr4 37259044 37259253 -165069094 - MIR SINE MIR -42 220 7 195 204 0 0 chr4 37259465 37259509 -165068838 + (CA)n Simple_repeat Simple_repeat 1 44 0 571 269 113 12 chr4 37259561 37259721 -165068626 - MER5A DNA MER1_type 0 189 14 214 190 203 38 chr4 37260373 37260452 -165067895 - MER5A DNA MER1_type 0 189 98 30 0 0 0 chr4 37260784 37260814 -165067533 + AT_rich Low_complexity Low_complexity 1 30 0 2752 232 33 6 chr4 37261154 37261787 -165066560 - MER82 DNA MER2_type -2 651 2 2118 125 3 0 chr4 37261927 37262230 -165066117 + AluSq SINE Alu 1 304 -9 23 0 0 0 chr4 37263205 37263228 -165065119 + AT_rich Low_complexity Low_complexity 1 23 0 1231 236 39 33 chr4 37264613 37264974 -165063373 + MLT1A1 LTR MaLR 1 363 -2 826 217 50 15 chr4 37264977 37265175 -165063172 + MLT1A1-int LTR MaLR 2 206 -1529 288 130 0 0 chr4 37265489 37265535 -165062812 + (T)n Simple_repeat Simple_repeat 1 46 0 1811 213 19 5 chr4 37265684 37266059 -165062288 + MLT1A1-int LTR MaLR 199 578 -1157 361 136 0 0 chr4 37266067 37266153 -165062194 - MLT2A2 LTR ERVL 0 458 394 262 243 0 0 chr4 37266153 37266227 -165062120 - L1MC4 LINE L1 -1355 6687 6614 237 33 0 0 chr4 37266227 37266257 -165062090 + (GA)n Simple_repeat Simple_repeat 2 31 0 632 43 97 0 chr4 37266499 37266706 -165061641 + (TA)n Simple_repeat Simple_repeat 1 227 0 1024 75 29 0 chr4 37266722 37266895 -165061452 + (TA)n Simple_repeat Simple_repeat 1 178 0 517 282 53 6 chr4 37266901 37267169 -165061178 - MLT2A2 LTR ERVL -91 463 185 307 271 15 53 chr4 37267179 37267312 -165061035 + MLT1A1-int LTR MaLR 599 726 -645 1332 220 34 37 chr4 37267542 37267896 -165060451 + MLT1A1 LTR MaLR 13 365 0 4135 189 59 28 chr4 37268579 37269413 -165058934 + L1MA8 LINE L1 4327 5134 -1157 234 0 0 0 chr4 37269413 37269439 -165058908 + (CAA)n Simple_repeat Simple_repeat 2 27 0 4135 189 59 28 chr4 37269439 37270507 -165057840 + L1MA8 LINE L1 5134 6291 0 183 80 0 0 chr4 37270911 37270936 -165057411 + (CA)n Simple_repeat Simple_repeat 2 26 0 1557 89 4 13 chr4 37272315 37272550 -165055797 - L1PA8 LINE L1 0 6172 5940 3596 110 35 12 chr4 37272557 37273120 -165055227 - L1PA13 LINE L1 -1 6162 5587 229 128 26 0 chr4 37273122 37273161 -165055186 + L1P4 LINE L1 5491 5530 -644 2033 115 0 4 chr4 37273579 37273908 -165054439 - AluSc SINE Alu 0 329 2 1604 188 3 7 chr4 37274276 37274563 -165053784 - AluJb SINE Alu -21 291 6 2062 131 10 0 chr4 37275350 37275655 -165052692 - AluSc SINE Alu -1 308 1 216 143 0 0 chr4 37275924 37275966 -165052381 + (TC)n Simple_repeat Simple_repeat 1 42 0 645 255 41 74 chr4 37277072 37277315 -165051032 - MIR SINE MIR -27 235 1 3226 212 97 46 chr4 37278087 37279128 -165049219 - LTR28 LTR ERV1 0 1755 1 214 265 20 0 chr4 37279495 37279544 -165048803 + L2 LINE L2 3249 3298 -15 495 193 25 0 chr4 37279666 37279785 -165048562 + L1MA7 LINE L1 6170 6291 0 24 0 0 0 chr4 37280294 37280318 -165048029 + AT_rich Low_complexity Low_complexity 1 24 0 970 314 80 54 chr4 37280626 37281490 -165046857 - L2 LINE L2 -1 3312 2419 1926 164 0 3 chr4 37281578 37281890 -165046457 + AluSx SINE Alu 1 311 -1 182 191 0 32 chr4 37282441 37282504 -165045843 + A-rich Low_complexity Low_complexity 5 65 0 21 0 0 0 chr4 37282692 37282713 -165045634 + AT_rich Low_complexity Low_complexity 1 21 0 287 348 80 46 chr4 37284115 37284529 -165043818 + L2 LINE L2 2464 2891 -423 23 0 0 0 chr4 37285284 37285307 -165043040 + AT_rich Low_complexity Low_complexity 1 23 0 24 32 0 0 chr4 37285600 37285631 -165042716 + AT_rich Low_complexity Low_complexity 1 31 0 23 54 0 0 chr4 37285706 37285743 -165042604 + AT_rich Low_complexity Low_complexity 1 37 0 21 89 0 0 chr4 37286300 37286356 -165041991 + AT_rich Low_complexity Low_complexity 1 56 0 437 299 0 24 chr4 37286496 37286623 -165041724 - MLT1F1 LTR MaLR -435 132 9 238 224 0 17 chr4 37286630 37286688 -165041659 + GA-rich Low_complexity Low_complexity 4 60 0 979 349 171 21 chr4 37286930 37288093 -165040254 - L2 LINE L2 -175 3138 1798 28 48 0 0 chr4 37288252 37288294 -165040053 + AT_rich Low_complexity Low_complexity 1 42 0 282 267 107 13 chr4 37288559 37288634 -165039713 - L2 LINE L2 -41 3231 3150 353 247 114 42 chr4 37288636 37288802 -165039545 + MER5B DNA MER1_type 1 178 0 394 181 0 0 chr4 37288980 37289052 -165039295 - L1MB3 LINE L1 -1 6182 6111 909 254 84 29 chr4 37289407 37289750 -165038597 - MLT1A1 LTR MaLR 0 365 4 253 282 14 0 chr4 37290004 37290075 -165038272 + CT-rich Low_complexity Low_complexity 4 75 0 213 39 0 0 chr4 37290785 37290811 -165037536 + (TA)n Simple_repeat Simple_repeat 2 27 0 928 222 95 100 chr4 37291845 37292738 -165035609 + LTR1B LTR ERV1 1 1020 0 25 31 0 0 chr4 37292876 37292908 -165035439 + AT_rich Low_complexity Low_complexity 1 32 0 35 24 0 0 chr4 37293356 37293398 -165034949 + AT_rich Low_complexity Low_complexity 1 42 0 218 196 0 0 chr4 37294248 37294299 -165034048 + T-rich Low_complexity Low_complexity 5 55 0 315 309 52 31 chr4 37295503 37295694 -165032653 + L1ME LINE L1 1042 1236 -5294 445 274 99 58 chr4 37295957 37296373 -165031974 + L1ME LINE L1 1495 1927 -4613 1812 116 4 8 chr4 37296628 37296896 -165031451 + AluSp SINE Alu 31 297 -16 26 64 0 0 chr4 37296922 37296969 -165031378 + AT_rich Low_complexity Low_complexity 1 47 0 355 319 59 28 chr4 37296985 37297256 -165031091 + L1ME LINE L1 2295 2616 -3981 346 265 40 7 chr4 37297274 37297425 -165030922 + L1ME LINE L1 2615 2770 -3770 290 320 150 35 chr4 37297679 37298020 -165030327 + L2 LINE L2 1718 2097 -1217 27 0 0 0 chr4 37299366 37299393 -165028954 + AT_rich Low_complexity Low_complexity 1 27 0 29 78 0 0 chr4 37299705 37299769 -165028578 + AT_rich Low_complexity Low_complexity 1 64 0 281 310 60 17 chr4 37299841 37299957 -165028390 - MIR SINE MIR -25 237 117 29 60 0 0 chr4 37300320 37300370 -165027977 + AT_rich Low_complexity Low_complexity 1 50 0 327 25 0 0 chr4 37300690 37300730 -165027617 + (CA)n Simple_repeat Simple_repeat 1 40 0 1035 267 125 35 chr4 37301004 37301847 -165026500 + L2 LINE L2 2222 3212 -101 234 91 0 0 chr4 37301963 37301996 -165026351 + (A)n Simple_repeat Simple_repeat 1 33 0 21 0 0 0 chr4 37302481 37302502 -165025845 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr4 37302902 37302925 -165025422 + AT_rich Low_complexity Low_complexity 1 23 0 186 133 0 0 chr4 37303717 37303747 -165024600 + (T)n Simple_repeat Simple_repeat 1 30 0 636 165 0 0 chr4 37305278 37305381 -165022966 - U13 snRNA snRNA -1 103 1 270 148 0 0 chr4 37305665 37305719 -165022628 + (ATG)n Simple_repeat Simple_repeat 3 56 0 221 98 24 0 chr4 37305874 37305915 -165022432 + (CA)n Simple_repeat Simple_repeat 2 43 0 305 254 26 9 chr4 37306509 37306623 -165021724 + (TA)n Simple_repeat Simple_repeat 2 117 0 601 282 37 66 chr4 37306658 37306931 -165021416 - LTR41 LTR ERVL -82 691 427 30 27 0 0 chr4 37307940 37307977 -165020370 + AT_rich Low_complexity Low_complexity 1 37 0 1478 274 100 32 chr4 37308033 37309241 -165019106 + L1ME3A LINE L1 4877 6167 -3 414 134 0 0 chr4 37309292 37309359 -165018988 + (TA)n Simple_repeat Simple_repeat 2 68 0 857 228 5 16 chr4 37309364 37309548 -165018799 - AluJb SINE Alu -30 282 101 1355 196 16 64 chr4 37310083 37310394 -165017953 - AluJb SINE Alu -14 298 3 2146 110 0 3 chr4 37311044 37311353 -165016994 - AluSq SINE Alu -5 308 1 193 241 222 0 chr4 37311353 37311407 -165016940 - MIR SINE MIR -6 256 191 239 239 55 28 chr4 37312269 37312378 -165015969 + L1M4 LINE L1 4530 4641 -1505 595 296 122 17 chr4 37312658 37312888 -165015459 - MIR SINE MIR -8 254 1 24 32 0 0 chr4 37313061 37313092 -165015255 + AT_rich Low_complexity Low_complexity 1 31 0 998 261 56 74 chr4 37313100 37313545 -165014802 - MLT1E3 LTR MaLR -91 533 97 705 193 74 0 chr4 37314689 37314865 -165013482 + MER53 DNA DNA 1 189 0 2942 196 47 12 chr4 37315866 37316529 -165011818 - L1MC2 LINE L1 -8 6336 5651 565 254 52 5 chr4 37316503 37316716 -165011631 - L1MC2 LINE L1 -794 5352 5130 * 2302 235 86 21 chr4 37316706 37317531 -165010816 - L1MC2 LINE L1 -1460 4686 3808 2999 177 16 7 chr4 37318218 37318767 -165009580 + L1PA16 LINE L1 5607 6160 -6 383 316 63 31 chr4 37319853 37320224 -165008123 + L1MEc LINE L1 2178 2517 -3698 952 147 6 6 chr4 37320316 37320473 -165007874 - AluJb SINE Alu -19 293 137 433 272 92 71 chr4 37320550 37321539 -165006808 + L1MEc LINE L1 2674 3683 -2532 2066 111 0 0 chr4 37321551 37321858 -165006489 - AluSg SINE Alu 0 307 1 302 255 179 46 chr4 37321990 37322469 -165005878 + L1MEc LINE L1 3866 4408 -1807 342 147 49 6 chr4 37322472 37322635 -165005712 + (TA)n Simple_repeat Simple_repeat 1 170 0 1974 109 3 0 chr4 37322635 37322920 -165005427 - AluSc SINE Alu -23 286 1 251 243 14 14 chr4 37322940 37323010 -165005337 + (TATG)n Simple_repeat Simple_repeat 2 71 0 1313 295 50 20 chr4 37325943 37326401 -165001946 - MLT1E2 LTR MaLR -26 600 129 2610 141 16 35 chr4 37326457 37326941 -165001406 - LTR44 LTR ERV1 -37 482 8 761 68 8 0 chr4 37326943 37327060 -165001287 + (TCTA)n Simple_repeat Simple_repeat 1 118 0 1020 243 58 0 chr4 37327061 37327304 -165001043 - MLT2D LTR ERVL -52 362 106 280 296 40 25 chr4 37327691 37327807 -165000540 + HERVL LTR ERVL 1932 2022 -3632 501 198 38 0 chr4 37327890 37327996 -165000351 - L1MD2 LINE L1 -56 6303 6194 233 176 59 0 chr4 37328766 37328817 -164999530 - MLT2B1 LTR ERVL -34 486 433 1659 172 35 0 chr4 37328821 37329106 -164999241 - AluY SINE Alu -14 297 3 386 178 29 46 chr4 37329211 37329385 -164998962 + CT-rich Low_complexity Low_complexity 4 174 0 1720 194 3 3 chr4 37330179 37330473 -164997874 + AluSx SINE Alu 1 294 -18 212 130 0 43 chr4 37330551 37330597 -164997750 + (TTTTTA)n Simple_repeat Simple_repeat 2 45 0 412 169 56 22 chr4 37331703 37331792 -164996555 - L1MC2 LINE L1 -283 6061 5970 1905 147 7 13 chr4 37331960 37332260 -164996087 + AluSq SINE Alu 1 298 -15 497 332 102 29 chr4 37333410 37333854 -164994493 + L2 LINE L2 2798 3271 -42 206 219 0 0 chr4 37333889 37333930 -164994417 + (TG)n Simple_repeat Simple_repeat 2 42 0 1243 86 0 17 chr4 37334383 37334558 -164993789 - L1PA3 LINE L1 0 6155 5984 421 222 17 0 chr4 37334884 37335001 -164993346 - L1MA10 LINE L1 0 6334 6216 239 267 0 0 chr4 37335020 37335080 -164993267 + L2 LINE L2 3006 3065 -248 1807 147 45 31 chr4 37335216 37335569 -164992778 - MSTA LTR MaLR -70 358 1 4029 139 42 10 chr4 37335572 37336254 -164992093 - L1MA2 LINE L1 -102 6202 5499 2498 330 93 24 chr4 37336290 37338463 -164989884 - L1MCb LINE L1 -1129 5435 3112 841 222 57 53 chr4 37338489 37339545 -164988802 - L1MCb LINE L1 -3653 2911 1558 2069 269 104 33 chr4 37339873 37340824 -164987523 - L1M4 LINE L1 -855 5291 4214 784 128 38 0 chr4 37340824 37340957 -164987390 - L1PA14 LINE L1 -5 6156 6019 2069 269 104 33 chr4 37340957 37341353 -164986994 - L1M4 LINE L1 -1932 4214 3848 1954 110 4 0 chr4 37341379 37341652 -164986695 + AluY SINE Alu 38 311 0 516 286 78 72 chr4 37342097 37342845 -164985502 - L1M4 LINE L1 -2323 3823 3072 580 346 33 43 chr4 37343571 37343730 -164984617 - L2 LINE L2 -68 3245 3086 1405 192 29 0 chr4 37343730 37344011 -164984336 + AluJo SINE Alu 1 289 -23 580 346 33 43 chr4 37344011 37344345 -164984002 - L2 LINE L2 -227 3086 2761 227 358 15 22 chr4 37344345 37344479 -164983868 - L2 LINE L2 -1267 2047 1915 25 0 0 0 chr4 37345930 37345955 -164982392 + AT_rich Low_complexity Low_complexity 1 25 0 1766 191 43 33 chr4 37346478 37346898 -164981449 + L1MC3 LINE L1 6653 7076 -709 3532 240 61 29 chr4 37347000 37348288 -164980059 - L1MCb LINE L1 -4849 1196 3 2867 262 95 8 chr4 37348320 37349777 -164978570 - L1ME1 LINE L1 -5 6441 4840 * 3067 290 63 38 chr4 37349775 37350998 -164977349 - L1ME1 LINE L1 -2074 4352 3061 1958 121 7 17 chr4 37350998 37351295 -164977052 + AluSg SINE Alu 1 294 -16 3067 290 63 38 chr4 37351295 37351963 -164976384 - L1ME1 LINE L1 -3365 3061 2412 25 0 0 0 chr4 37351965 37351990 -164976357 + AT_rich Low_complexity Low_complexity 1 25 0 25 51 0 0 chr4 37352184 37352223 -164976124 + AT_rich Low_complexity Low_complexity 1 39 0 226 318 48 0 chr4 37352323 37352449 -164975898 - L1ME1 LINE L1 -4199 2227 2096 387 179 3 5 chr4 37352656 37352738 -164975609 - AluJ/FLAM SINE Alu -237 65 1 609 265 100 67 chr4 37352785 37353234 -164975113 - MLT1C LTR MaLR -3 464 1 1180 265 46 14 chr4 37353759 37353884 -164974463 + L1ME2 LINE L1 4719 4839 -1307 1587 209 21 12 chr4 37353884 37354223 -164974124 + MER2 DNA MER2_type 2 343 -1 1180 265 46 14 chr4 37354223 37354512 -164973835 + L1ME2 LINE L1 4839 5146 -1000 546 229 149 68 chr4 37354585 37355036 -164973311 + L1ME2 LINE L1 5630 6293 -41 1230 253 132 64 chr4 37355304 37355719 -164972628 + L1ME2 LINE L1 4768 5153 -1011 2206 112 0 0 chr4 37355719 37356023 -164972324 + AluY SINE Alu 1 304 -7 1230 253 132 64 chr4 37356023 37356247 -164972100 + L1ME2 LINE L1 5153 5360 -804 402 21 0 0 chr4 37356247 37356294 -164972053 + (CA)n Simple_repeat Simple_repeat 2 48 0 1230 253 132 64 chr4 37356294 37356912 -164971435 + L1ME2 LINE L1 5360 6115 -49 552 274 11 26 chr4 37357215 37357405 -164970942 + MLT1A2 LTR MaLR 1 187 -187 378 329 77 45 chr4 37357522 37358081 -164970266 - L1ME1 LINE L1 -4810 1618 988 1119 217 8 17 chr4 37358298 37358533 -164969814 + AluJo SINE Alu 50 282 -30 25 0 0 0 chr4 37359330 37359355 -164968992 + AT_rich Low_complexity Low_complexity 1 25 0 2648 177 16 4 chr4 37359386 37359895 -164968452 - L1PA16 LINE L1 -9 6157 5643 428 129 6 74 chr4 37359901 37360064 -164968283 + (TA)n Simple_repeat Simple_repeat 2 153 0 258 156 0 0 chr4 37360064 37360109 -164968238 - L1PA16 LINE L1 -530 5635 5591 1378 372 122 8 chr4 37360110 37360494 -164967853 - MSTA LTR MaLR 0 428 1 5826 202 33 14 chr4 37360495 37362352 -164965995 - L1P4 LINE L1 -573 5593 3697 3295 274 16 16 chr4 37362345 37363491 -164964856 + L1P4 LINE L1 2542 3687 -2459 * 23 54 0 0 chr4 37363497 37363534 -164964813 + AT_rich Low_complexity Low_complexity 1 37 0 2056 130 3 12 chr4 37363889 37364219 -164964128 + HERVH LTR ERV1 2604 2930 -4783 375 140 0 0 chr4 37364220 37364277 -164964070 - LTR7 LTR ERV1 0 450 394 745 204 7 0 chr4 37364278 37364425 -164963922 - HERVH LTR ERV1 -5751 1962 1815 * 2941 107 27 13 chr4 37364416 37364894 -164963453 + HERVH LTR ERV1 7229 7713 0 1369 174 99 67 chr4 37364894 37365330 -164963017 + LTR7 LTR ERV1 1 450 0 11788 153 14 28 chr4 37365331 37367500 -164960847 - HERVH LTR ERV1 -4783 2930 793 1096 200 14 6 chr4 37367575 37367970 -164960377 - HERVH LTR ERV1 -7267 446 12 1102 199 107 65 chr4 37367982 37368414 -164959933 - LTR7 LTR ERV1 0 450 1 22 0 0 0 chr4 37369217 37369239 -164959108 + AT_rich Low_complexity Low_complexity 1 22 0 27 29 0 0 chr4 37369290 37369324 -164959023 + AT_rich Low_complexity Low_complexity 1 34 0 31 44 0 0 chr4 37370485 37370530 -164957817 + AT_rich Low_complexity Low_complexity 1 45 0 21 36 0 0 chr4 37371087 37371115 -164957232 + AT_rich Low_complexity Low_complexity 1 28 0 878 304 50 22 chr4 37371394 37371462 -164956885 - L1MEc LINE L1 -2051 4890 4825 1546 271 72 35 chr4 37371462 37372034 -164956313 - MLT1E LTR MaLR 0 593 1 878 304 50 22 chr4 37372034 37372511 -164955836 - L1MEc LINE L1 -2116 4825 4330 * 1048 282 81 39 chr4 37372508 37373411 -164954936 - L1MEc LINE L1 -3747 3194 2292 495 300 69 28 chr4 37373482 37373945 -164954402 - L1MEc LINE L1 -4945 1996 1515 * 511 274 37 11 chr4 37373920 37374110 -164954237 - L1MEc LINE L1 -6212 211 17 478 337 27 34 chr4 37374396 37374693 -164953654 - L1MEc LINE L1 -6024 372 78 221 250 0 0 chr4 37375666 37375718 -164952629 - L2 LINE L2 0 3313 3262 23 101 0 0 chr4 37378057 37378136 -164950211 + AT_rich Low_complexity Low_complexity 1 79 0 814 299 49 55 chr4 37378187 37378998 -164949349 + L1MB1 LINE L1 1596 2236 -5250 3001 236 44 13 chr4 37379112 37379858 -164948489 + L1MB1 LINE L1 2202 2970 -4516 3892 235 47 32 chr4 37379868 37382686 -164945661 + L1MB1 LINE L1 2889 5663 -1924 189 0 0 0 chr4 37382686 37382707 -164945640 + (CA)n Simple_repeat Simple_repeat 2 22 0 3892 235 47 32 chr4 37382707 37383567 -164944780 + L1MB1 LINE L1 5663 6509 -1078 2031 123 34 0 chr4 37383567 37383859 -164944488 + AluSx SINE Alu 1 302 -10 3892 235 47 32 chr4 37383859 37383906 -164944441 + L1MB1 LINE L1 6509 7585 -2 257 223 284 19 chr4 37384049 37384264 -164944083 - L1M4 LINE L1 -3452 2694 2423 3248 177 148 18 chr4 37384829 37385602 -164942745 + MER52C LTR ERV1 406 1278 0 834 308 106 16 chr4 37385743 37386185 -164942162 - L1ME1 LINE L1 -6 6160 5679 330 139 0 0 chr4 37436195 37436267 -164892080 + (TA)n Simple_repeat Simple_repeat 2 73 0 313 267 58 0 chr4 37436268 37436354 -164891993 + L1MC4 LINE L1 6613 6703 -1339 744 179 0 0 chr4 37436355 37436614 -164891733 + (TA)n Simple_repeat Simple_repeat 1 259 0 4207 99 2 2 chr4 37436701 37437285 -164891062 + HERVL-A1 LTR ERVL 1 584 -5070 969 191 0 0 chr4 37437528 37437716 -164890631 - L1PA16 LINE L1 -1 6165 5978 910 121 0 0 chr4 37437717 37437849 -164890498 + L1PA16 LINE L1 5840 5971 -195 21 0 0 0 chr4 37438141 37438162 -164890185 + AT_rich Low_complexity Low_complexity 1 21 0 28223 161 29 30 chr4 37438627 37443596 -164884751 + HERVL-A1 LTR ERVL 793 5758 -6 2807 119 5 2 chr4 37443597 37443999 -164884348 + MLT2A1 LTR ERVL 3 405 -39 181 85 68 34 chr4 37444001 37444060 -164884287 + (TATAA)n Simple_repeat Simple_repeat 5 65 0 704 110 0 0 chr4 37444070 37444170 -164884177 + HERVL LTR ERVL 2764 2863 -2791 266 152 0 0 chr4 37444176 37444222 -164884125 + MLT2A1 LTR ERVL 399 444 0 2927 211 46 31 chr4 37444223 37444430 -164883917 - MLT1A1-int LTR MaLR -978 757 555 1875 177 0 0 chr4 37444430 37444729 -164883618 - AluSx SINE Alu -9 303 5 2927 211 46 31 chr4 37444729 37445174 -164883173 - MLT1A1-int LTR MaLR -1180 555 95 253 121 0 0 chr4 37445176 37445209 -164883138 + MLT1A1 LTR MaLR 261 293 -72 327 228 0 13 chr4 37445353 37445432 -164882915 - MLT1A1-int LTR MaLR -1656 79 2 934 247 37 4 chr4 37445465 37445708 -164882639 - MLT1A1 LTR MaLR -114 251 1 558 268 46 0 chr4 37445711 37445864 -164882483 + MIR SINE MIR 94 253 -9 256 364 0 10 chr4 37447058 37447157 -164881190 - MER5A DNA MER1_type -3 186 89 210 274 8 103 chr4 37447363 37447480 -164880867 + MER5A DNA MER1_type 9 114 -75 1016 152 71 3 chr4 37448877 37449074 -164879273 - L1MC/D LINE L1 -453 5789 5585 * 2017 210 12 2 chr4 37449065 37449703 -164878644 + L1MC/D LINE L1 4978 5620 -724 1986 118 3 13 chr4 37449989 37450293 -164878054 - AluY SINE Alu -10 301 1 21 0 0 0 chr4 37450551 37450572 -164877775 + AT_rich Low_complexity Low_complexity 1 21 0 391 219 9 0 chr4 37450865 37450970 -164877377 + LTR37A LTR ERV1 319 424 -2 386 208 28 0 chr4 37451160 37451259 -164877088 - MER61E LTR ERV1 -95 699 377 2303 74 0 10 chr4 37451259 37451570 -164876777 - L1PA7 LINE L1 0 6154 5847 23 92 0 0 chr4 37451748 37451813 -164876534 + AT_rich Low_complexity Low_complexity 1 65 0 309 169 36 0 chr4 37451884 37451967 -164876380 + (TA)n Simple_repeat Simple_repeat 2 87 0 208 303 0 0 chr4 37452535 37452611 -164875736 + T-rich Low_complexity Low_complexity 1 76 0 786 238 117 75 chr4 37453143 37453580 -164874767 + MSTB2 LTR MaLR 3 457 0 288 333 128 6 chr4 37453814 37453994 -164874353 + MIR SINE MIR 58 259 -3 22 0 0 0 chr4 37454042 37454064 -164874283 + AT_rich Low_complexity Low_complexity 1 22 0 441 319 25 71 chr4 37454240 37454563 -164873784 + MLT1H LTR MaLR 235 542 -7 2695 50 0 3 chr4 37454584 37454926 -164873421 + L1PA5 LINE L1 5813 6153 -1 561 301 151 21 chr4 37456796 37457173 -164871174 + LTR33A LTR ERVL 106 514 -9 448 314 100 49 chr4 37457610 37457776 -164870571 + L1MC4a LINE L1 5264 5420 -2388 2363 77 0 3 chr4 37457776 37458086 -164870261 + AluY SINE Alu 1 309 -2 448 314 100 49 chr4 37458086 37458549 -164869798 + L1MC4a LINE L1 5420 5925 -1883 27 62 0 0 chr4 37458565 37458613 -164869734 + AT_rich Low_complexity Low_complexity 1 48 0 46 92 0 0 chr4 37458744 37458874 -164869473 + AT_rich Low_complexity Low_complexity 1 130 0 198 398 21 11 chr4 37460105 37460198 -164868149 - L2 LINE L2 -10 3262 3169 31 26 0 0 chr4 37460224 37460262 -164868085 + AT_rich Low_complexity Low_complexity 1 38 0 244 312 92 0 chr4 37460913 37461022 -164867325 + L1ME LINE L1 5548 5666 -455 24 0 0 0 chr4 37461379 37461403 -164866944 + AT_rich Low_complexity Low_complexity 1 24 0 2177 70 7 11 chr4 37461416 37461748 -164866599 - AluY SINE Alu 0 331 1 223 170 0 0 chr4 37461955 37462002 -164866345 + (TTG)n Simple_repeat Simple_repeat 2 48 0 1068 193 14 9 chr4 37462330 37462543 -164865804 - Tigger2 DNA MER2_type 0 2718 2505 4690 131 40 26 chr4 37462544 37463341 -164865006 + L1PA12 LINE L1 5361 6168 0 3936 173 33 0 chr4 37463424 37464153 -164864194 - Tigger2 DNA MER2_type -1965 753 1 24 53 0 0 chr4 37464968 37465006 -164863341 + AT_rich Low_complexity Low_complexity 1 38 0 211 296 136 45 chr4 37465971 37466103 -164862244 + L2 LINE L2 3145 3288 -25 1340 140 9 9 chr4 37467076 37467297 -164861050 - AluSg/x SINE Alu 0 312 92 2739 116 36 58 chr4 37467297 37467798 -164860549 + LTR2B LTR ERV1 1 490 0 41326 205 15 8 chr4 37467798 37475557 -164852790 + HERVE LTR ERV1 1 7812 -1 2606 124 51 55 chr4 37475557 37476049 -164852298 + LTR2B LTR ERV1 1 490 0 585 109 33 0 chr4 37476049 37476141 -164852206 - AluJ/FLAM SINE Alu -217 95 1 25 51 0 0 chr4 37476594 37476633 -164851714 + AT_rich Low_complexity Low_complexity 1 39 0 21 36 0 0 chr4 37476775 37476803 -164851544 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr4 37476890 37476920 -164851427 + AT_rich Low_complexity Low_complexity 1 30 0 356 157 29 29 chr4 37476974 37477146 -164851201 + (TA)n Simple_repeat Simple_repeat 1 172 0 310 175 30 18 chr4 37477158 37477324 -164851023 + (TA)n Simple_repeat Simple_repeat 1 168 0 277 231 29 0 chr4 37477337 37477510 -164850837 + (TA)n Simple_repeat Simple_repeat 1 178 0 2185 126 25 14 chr4 37477983 37478340 -164850007 - L1PA16 LINE L1 0 6166 5806 1003 328 94 22 chr4 37478366 37478948 -164849399 + MLT2E LTR ERVL 1 624 -4 289 368 36 18 chr4 37479122 37479288 -164849059 + MER5B DNA MER1_type 7 175 -3 186 324 14 0 chr4 37479366 37479437 -164848910 + MIR SINE MIR 90 161 -101 326 260 41 47 chr4 37479792 37479961 -164848386 - L2 LINE L2 -50 3263 3096 23 0 0 0 chr4 37480152 37480175 -164848172 + AT_rich Low_complexity Low_complexity 1 23 0 1283 294 105 42 chr4 37480582 37481216 -164847131 + L1M4 LINE L1 3945 4538 -1608 210 71 0 0 chr4 37481216 37481244 -164847103 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1283 294 105 42 chr4 37481244 37481975 -164846372 + L1M4 LINE L1 4538 5395 -751 2225 90 0 3 chr4 37481979 37482269 -164846078 - AluY SINE Alu -22 289 1 1558 185 0 53 chr4 37482549 37482852 -164845495 - MER1B DNA MER1_type 0 339 53 1544 156 0 113 chr4 37482941 37483287 -164845060 - AluSx SINE Alu 0 310 1 314 322 116 9 chr4 37483894 37484073 -164844274 - MIR SINE MIR -66 196 1 578 237 68 51 chr4 37484602 37484838 -164843509 - MER92B LTR ERV1 -2 634 395 21 0 0 0 chr4 37485515 37485536 -164842811 + AT_rich Low_complexity Low_complexity 1 21 0 363 193 18 9 chr4 37485694 37485808 -164842539 + (TA)n Simple_repeat Simple_repeat 1 115 0 21 0 0 0 chr4 37486377 37486398 -164841949 + AT_rich Low_complexity Low_complexity 1 21 0 289 272 12 49 chr4 37486673 37486754 -164841593 + Tigger7 DNA MER2_type 2414 2491 0 2075 188 28 12 chr4 37487072 37487497 -164840850 + Tigger2a DNA MER2_type 1 432 -2 493 244 0 0 chr4 37487510 37487600 -164840747 + Tigger2 DNA MER2_type 2628 2717 -1 186 43 0 0 chr4 37487910 37487933 -164840414 + (ATG)n Simple_repeat Simple_repeat 2 24 0 630 291 112 68 chr4 37487994 37488405 -164839942 + MLT1H1 LTR MaLR 6 435 -132 273 285 80 88 chr4 37488597 37488734 -164839613 - MIR SINE MIR -21 241 106 538 303 39 0 chr4 37488999 37489154 -164839193 + L2 LINE L2 3106 3266 -6 26 0 0 0 chr4 37490485 37490511 -164837836 + AT_rich Low_complexity Low_complexity 1 26 0 2196 111 39 31 chr4 37490828 37491188 -164837159 - THE1B LTR MaLR -1 363 1 1140 214 82 4 chr4 37492056 37492174 -164836173 + AluJo SINE Alu 1 108 -194 360 64 0 0 chr4 37492174 37492221 -164836126 + (TAA)n Simple_repeat Simple_repeat 2 48 0 1140 214 82 4 chr4 37492221 37492382 -164835965 + AluJo SINE Alu 108 302 0 222 37 0 0 chr4 37492701 37492728 -164835619 + (CA)n Simple_repeat Simple_repeat 2 28 0 1320 186 63 11 chr4 37493258 37493543 -164834804 - AluJb SINE Alu -12 300 1 299 257 100 64 chr4 37493559 37493699 -164834648 - L2 LINE L2 -62 3251 3107 244 256 26 0 chr4 37493709 37493787 -164834560 + MER116 DNA Mariner 1 80 0 1522 323 113 45 chr4 37493814 37495482 -164832865 - L2 LINE L2 -271 3042 1255 186 217 0 83 chr4 37496706 37496766 -164831581 - L3 LINE CR1 -241 1336 1282 513 316 37 53 chr4 37497443 37497766 -164830581 - L2 LINE L2 0 3313 2996 988 244 16 35 chr4 37497792 37498050 -164830297 + MLT1E LTR MaLR 341 593 0 795 269 26 70 chr4 37498054 37498221 -164830126 - L2 LINE L2 -1874 1440 1291 653 188 0 8 chr4 37498221 37498372 -164829975 + FLAM_A SINE Alu 1 150 0 795 269 26 70 chr4 37498372 37498515 -164829832 - L2 LINE L2 -2023 1291 1143 1267 344 14 24 chr4 37498537 37499113 -164829234 - L2 LINE L2 -2474 840 271 942 267 55 6 chr4 37499152 37499478 -164828869 - MER90 LTR ERV1 -233 342 1 285 296 0 45 chr4 37499585 37499673 -164828674 - L2 LINE L2 -3123 191 108 25 0 0 0 chr4 37499806 37499831 -164828516 + AT_rich Low_complexity Low_complexity 1 25 0 27 49 0 0 chr4 37500391 37500432 -164827915 + AT_rich Low_complexity Low_complexity 1 41 0 5954 196 10 6 chr4 37500711 37501930 -164826417 - L1PA14 LINE L1 -1056 5090 3867 4712 142 33 56 chr4 37501935 37502218 -164826129 + L1PA14 LINE L1 5086 5374 -787 432 97 0 0 chr4 37502218 37502280 -164826067 + (TA)n Simple_repeat Simple_repeat 2 63 0 4712 142 33 56 chr4 37502280 37503097 -164825250 + L1PA14 LINE L1 5374 6161 0 26 0 0 0 chr4 37503118 37503144 -164825203 + AT_rich Low_complexity Low_complexity 1 26 0 1140 189 39 31 chr4 37503153 37503439 -164824908 - L1MA4 LINE L1 -15 6285 5998 609 230 97 92 chr4 37503579 37503820 -164824527 + L1MC5 LINE L1 7419 7658 -303 2228 113 0 0 chr4 37503820 37504121 -164824226 - AluSg SINE Alu -9 301 1 609 230 97 92 chr4 37504121 37504387 -164823960 + L1MC5 LINE L1 7658 7928 -33 287 321 99 29 chr4 37504945 37505188 -164823159 + L3 LINE CR1 1162 1421 -156 21 0 0 0 chr4 37505220 37505241 -164823106 + AT_rich Low_complexity Low_complexity 1 21 0 339 85 0 0 chr4 37505621 37505668 -164822679 + (CA)n Simple_repeat Simple_repeat 1 47 0 1378 220 99 62 chr4 37505715 37506211 -164822136 - L1MB8 LINE L1 -14 6164 5659 558 313 200 52 chr4 37506212 37507359 -164820988 + L2 LINE L2 857 2172 -1142 413 371 24 6 chr4 37507368 37507538 -164820809 - MER5B DNA MER1_type 0 178 6 213 339 100 23 chr4 37507542 37507672 -164820675 + L2 LINE L2 2178 2317 -997 32 26 0 0 chr4 37508474 37508513 -164819834 + AT_rich Low_complexity Low_complexity 1 39 0 773 197 0 0 chr4 37508513 37508645 -164819702 - FLAM_C SINE Alu 0 133 2 230 367 94 11 chr4 37508719 37508899 -164819448 - L2 LINE L2 -660 2654 2460 780 315 80 17 chr4 37508986 37509338 -164819009 - L2 LINE L2 -1428 1886 1513 886 264 0 13 chr4 37509439 37509666 -164818681 + MER58A DNA MER1_type 1 224 0 5489 179 11 8 chr4 37510200 37512176 -164816171 - L1PA15 LINE L1 -5 6160 4179 507 217 8 9 chr4 37512169 37512309 -164816038 - L1PA15 LINE L1 -3853 2293 2151 * 499 182 10 0 chr4 37512322 37512421 -164815926 + L1P LINE L1 1842 1941 -4205 23 0 0 0 chr4 37512932 37512955 -164815392 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr4 37513626 37513651 -164814696 + AT_rich Low_complexity Low_complexity 1 25 0 243 346 19 0 chr4 37513676 37513780 -164814567 + Charlie8 DNA MER1_type 124 229 -2188 35 0 0 0 chr4 37513951 37513986 -164814361 + AT_rich Low_complexity Low_complexity 1 35 0 1787 151 4 0 chr4 37514224 37514496 -164813851 - AluSx SINE Alu -39 273 1 201 371 186 0 chr4 37514764 37514888 -164813459 - MIR3 SINE MIR -34 174 28 1432 158 0 121 chr4 37514926 37515256 -164813091 + AluJb SINE Alu 1 290 -12 30 0 0 0 chr4 37515868 37515898 -164812449 + AT_rich Low_complexity Low_complexity 1 30 0 244 245 0 0 chr4 37516054 37516103 -164812244 + L2 LINE L2 3257 3305 -8 1006 275 75 21 chr4 37516473 37516898 -164811449 - L1ME3A LINE L1 -5 6165 5718 256 274 0 0 chr4 37516905 37516956 -164811391 - Tigger5 DNA MER2_type 0 2323 2273 282 222 0 0 chr4 37516985 37517039 -164811308 - Tigger5 DNA MER2_type -2244 79 26 821 267 72 65 chr4 37517050 37517327 -164811020 - L1P3 LINE L1 -459 5711 5434 225 65 0 0 chr4 37517335 37517366 -164810981 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 1411 35 0 2 chr4 37517367 37517609 -164810738 - AluY SINE Alu -32 279 1 1996 119 0 19 chr4 37517846 37518164 -164810183 - AluSx SINE Alu 0 312 1 23 0 0 0 chr4 37518453 37518476 -164809871 + AT_rich Low_complexity Low_complexity 1 23 0 736 343 67 35 chr4 37519627 37520061 -164808286 - MLT1J LTR MaLR -63 448 1 237 33 0 0 chr4 37520114 37520144 -164808203 + (CA)n Simple_repeat Simple_repeat 1 30 0 342 67 0 0 chr4 37520163 37520208 -164808139 + (TAAA)n Simple_repeat Simple_repeat 1 45 0 1320 219 28 10 chr4 37520210 37520498 -164807849 + AluJo SINE Alu 1 293 -19 331 385 34 13 chr4 37521130 37521369 -164806978 + L1MC4a LINE L1 5678 5921 -1887 1593 185 91 40 chr4 37522052 37522457 -164805890 - MSTA LTR MaLR -2 426 1 8789 195 13 4 chr4 37522457 37524080 -164804267 - MSTA-int LTR MaLR 0 1651 15 1821 209 63 21 chr4 37524093 37524476 -164803871 - MSTA LTR MaLR 0 428 30 1868 220 55 21 chr4 37525805 37526241 -164802106 - MLT1D LTR MaLR -51 454 4 3557 114 0 14 chr4 37526258 37526776 -164801571 + MER9 LTR ERVK 1 511 0 20099 73 30 26 chr4 37526776 37527537 -164800810 + HERVK9 LTR ERVK 1 758 -5158 188 197 0 98 chr4 37527537 37527598 -164800749 + MER5B DNA MER1_type 55 109 -69 20099 73 30 26 chr4 37527598 37529552 -164798795 + HERVK9 LTR ERVK 758 2786 -3130 1784 82 0 0 chr4 37529552 37529783 -164798564 + HERVK9 LTR ERVK 3711 3941 -1975 * 7349 119 4 5 chr4 37529782 37530836 -164797511 + HERVK9 LTR ERVK 4582 5634 -282 2283 112 9 10 chr4 37530861 37531215 -164797132 + HERVK9 LTR ERVK 5635 5916 0 3670 98 0 14 chr4 37531215 37531733 -164796614 + MER9 LTR ERVK 1 511 0 1240 175 50 12 chr4 37531743 37531983 -164796364 + MER101B LTR ERV1 1 249 -321 308 236 43 93 chr4 37532308 37532448 -164795899 + L2 LINE L2 3179 3311 -2 249 139 0 0 chr4 37533115 37533158 -164795189 + (CA)n Simple_repeat Simple_repeat 2 44 0 1184 220 89 94 chr4 37533182 37533596 -164794751 + MLT2B1 LTR ERVL 1 412 -2 287 318 24 47 chr4 37533704 37533874 -164794473 + MER69 DNA AcHobo 1 166 -2360 1859 147 0 0 chr4 37533944 37534217 -164794130 + AluSg SINE Alu 36 308 -2 183 204 0 0 chr4 37534620 37534669 -164793678 + GA-rich Low_complexity Low_complexity 1 49 0 231 388 129 0 chr4 37535546 37535662 -164792685 + MER5A DNA MER1_type 1 131 -58 2106 120 60 23 chr4 37536239 37536590 -164791757 - THE1B LTR MaLR 0 364 1 209 108 27 0 chr4 37536800 37536837 -164791510 + (TAGA)n Simple_repeat Simple_repeat 1 38 0 24 53 0 0 chr4 37538011 37538049 -164790298 + AT_rich Low_complexity Low_complexity 1 38 0 56 16 0 0 chr4 37538478 37538541 -164789806 + AT_rich Low_complexity Low_complexity 1 63 0 934 258 94 52 chr4 37538618 37539211 -164789136 + MLT1E3 LTR MaLR 1 624 0 30 59 0 0 chr4 37539227 37539278 -164789069 + AT_rich Low_complexity Low_complexity 1 51 0 2115 88 0 47 chr4 37539320 37539639 -164788708 - AluY SINE Alu -7 304 1 510 270 121 27 chr4 37540814 37541303 -164787044 - MLT1E1 LTR MaLR -9 645 1 271 351 73 25 chr4 37541464 37541709 -164786638 + L2 LINE L2 2244 2500 -814 312 185 65 54 chr4 37541753 37541845 -164786502 + MLT1J2 LTR MaLR 342 434 -16 3110 206 13 23 chr4 37542444 37543127 -164785220 + L1MC3 LINE L1 7092 7767 -18 1148 228 12 46 chr4 37543144 37543249 -164785098 + L1MD2 LINE L1 6045 6152 -207 369 0 0 0 chr4 37543249 37543290 -164785057 + (CA)n Simple_repeat Simple_repeat 1 41 0 1148 228 12 46 chr4 37543290 37543509 -164784838 + L1MD2 LINE L1 6152 6358 -1 1916 240 91 61 chr4 37543509 37544843 -164783504 + L1ME1 LINE L1 4649 6022 -144 2034 152 32 16 chr4 37545158 37545527 -164782820 + THE1C LTR MaLR 1 375 0 873 202 12 0 chr4 37545776 37545944 -164782403 - MLT2B1 LTR ERVL 0 520 351 526 182 10 10 chr4 37545960 37546059 -164782288 + FLAM_A SINE Alu 33 131 -11 724 248 35 0 chr4 37546077 37546222 -164782125 - MLT2B1 LTR ERVL -191 329 180 36 0 0 0 chr4 37546237 37546273 -164782074 + AT_rich Low_complexity Low_complexity 1 36 0 207 69 0 0 chr4 37546274 37546303 -164782044 + (TATG)n Simple_repeat Simple_repeat 2 30 0 370 252 53 15 chr4 37546311 37546442 -164781905 + L1M4 LINE L1 4809 4944 -1202 953 147 31 0 chr4 37546479 37546642 -164781705 - MLT2B1 LTR ERVL -350 170 3 1097 342 79 23 chr4 37547530 37548384 -164779963 + L2 LINE L2 2406 3305 -8 226 277 129 0 chr4 37549269 37549370 -164778977 - MIR SINE MIR -61 201 88 223 265 45 91 chr4 37551758 37551890 -164776457 + L2 LINE L2 3098 3223 -90 263 213 0 0 chr4 37551903 37551950 -164776397 + MLT2D LTR ERVL 307 353 -61 265 222 49 0 chr4 37551955 37552036 -164776311 + (TAGA)n Simple_repeat Simple_repeat 4 88 0 289 167 76 15 chr4 37552036 37552102 -164776245 + Ricksha DNA DNA 845 914 -1132 355 83 0 0 chr4 37553790 37553838 -164774509 - MADE1 DNA Mariner -32 48 1 216 182 0 0 chr4 37555661 37555705 -164772642 + (TATATG)n Simple_repeat Simple_repeat 4 47 0 2440 237 106 18 chr4 37556088 37557047 -164771300 + Looper DNA T2_type 16 1059 -499 548 237 26 0 chr4 37557086 37557200 -164771147 + Tigger3(Golem) DNA MER2_type 1 117 -2912 1672 148 35 45 chr4 37557200 37557665 -164770682 + MSTA LTR MaLR 1 412 -14 261 244 105 0 chr4 37557873 37557959 -164770388 + MLT1D LTR MaLR 1 95 -410 1800 213 53 8 chr4 37557964 37558340 -164770007 + MSTD LTR MaLR 4 396 0 5582 253 81 33 chr4 37558349 37558615 -164769732 + MSTA-int LTR MaLR 15 267 -1468 2815 134 14 5 chr4 37558615 37559039 -164769308 + MSTA LTR MaLR 1 428 0 5582 253 81 33 chr4 37559039 37560408 -164767939 + MSTA-int LTR MaLR 267 1729 -6 1374 246 102 8 chr4 37560413 37560775 -164767572 + MSTD LTR MaLR 1 396 0 873 235 119 18 chr4 37560775 37561052 -164767295 + MLT1D LTR MaLR 93 397 -108 316 167 0 30 chr4 37561045 37561111 -164767236 + MLT1D LTR MaLR 558 621 -3 * 197 330 55 18 chr4 37561825 37561934 -164766413 - L2 LINE L2 0 3272 3160 247 366 81 21 chr4 37562013 37562199 -164766148 + MIR SINE MIR 32 228 -34 23 0 0 0 chr4 37563555 37563578 -164764769 + AT_rich Low_complexity Low_complexity 1 23 0 3440 136 34 2 chr4 37564579 37565139 -164763208 + L1PA11 LINE L1 5597 6174 0 241 346 65 17 chr4 37565151 37565382 -164762965 + HAL1b LINE L1 688 929 -419 23 33 0 0 chr4 37565413 37565443 -164762904 + AT_rich Low_complexity Low_complexity 1 30 0 3273 201 27 22 chr4 37565754 37566484 -164761863 - L1MA8 LINE L1 -6 6285 5552 468 176 12 0 chr4 37566502 37566587 -164761760 - L1MA8 LINE L1 -1156 4990 4905 * 894 92 15 0 chr4 37566585 37566715 -164761632 - L1MA8 LINE L1 -1834 4312 4181 24 32 0 0 chr4 37567518 37567549 -164760798 + AT_rich Low_complexity Low_complexity 1 31 0 12059 225 21 14 chr4 37567877 37569816 -164758531 + L1PA13 LINE L1 1 2001 -4796 6691 83 0 16 chr4 37569816 37571459 -164756888 + L1PA8 LINE L1 4548 6163 -9 12059 225 21 14 chr4 37571459 37572980 -164755367 + L1PA13 LINE L1 2001 3510 -3287 635 243 7 3 chr4 37572974 37573163 -164755184 + L1P LINE L1 2700 2886 -3260 * 5226 148 11 0 chr4 37573169 37574194 -164754153 + L1PA14 LINE L1 5047 6080 -81 251 299 11 0 chr4 37574195 37574282 -164754065 + (TA)n Simple_repeat Simple_repeat 1 88 0 1486 183 0 14 chr4 37574415 37574699 -164753648 + AluJo SINE Alu 21 300 -12 21 57 0 0 chr4 37574868 37574903 -164753444 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr4 37575823 37575844 -164752503 + AT_rich Low_complexity Low_complexity 1 21 0 268 255 0 51 chr4 37576150 37576248 -164752099 + GA-rich Low_complexity Low_complexity 4 96 0 2720 187 14 4 chr4 37576740 37577238 -164751109 + LTR22 LTR ERVK 1 503 -77 238 236 110 143 chr4 37577449 37577686 -164750661 + L1M4 LINE L1 644 872 -5670 218 173 39 0 chr4 37577724 37577776 -164750571 + (TAAA)n Simple_repeat Simple_repeat 2 55 0 1456 262 41 39 chr4 37577855 37578726 -164749621 + L1M4 LINE L1 986 1861 -4785 321 26 0 0 chr4 37578809 37578847 -164749500 + (TG)n Simple_repeat Simple_repeat 1 38 0 2279 131 19 6 chr4 37578852 37579211 -164749136 - THE1B LTR MaLR 0 364 1 233 371 0 0 chr4 37579778 37579867 -164748480 - L2 LINE L2 -5 3308 3220 3936 224 31 27 chr4 37579891 37580926 -164747421 - L1MC3 LINE L1 -715 7070 6032 768 280 84 17 chr4 37580921 37581273 -164747074 - L1MCa LINE L1 -5676 549 46 * 184 229 131 16 chr4 37581679 37581740 -164746607 - L2 LINE L2 -4 3309 3242 21 57 0 0 chr4 37583289 37583324 -164745023 + AT_rich Low_complexity Low_complexity 1 35 0 195 292 79 56 chr4 37584633 37584722 -164743625 + MER5B DNA MER1_type 8 98 -80 201 121 0 0 chr4 37585530 37585563 -164742784 + (CATATA)n Simple_repeat Simple_repeat 3 35 0 331 279 121 0 chr4 37585567 37585707 -164742640 - L1MC4 LINE L1 -1340 6702 6546 1790 189 46 3 chr4 37586077 37586427 -164741920 - MLT1A1 LTR MaLR 0 365 1 2512 241 55 115 chr4 37586427 37587091 -164741256 - MLT1A1-int LTR MaLR 0 1735 1155 4490 46 7 4 chr4 37587091 37587652 -164740695 - L1PA5 LINE L1 -2 6152 5590 2512 241 55 115 chr4 37587652 37588032 -164740315 - MLT1A1-int LTR MaLR -580 1155 754 1266 130 0 0 chr4 37588032 37588224 -164740123 + MLT2A1 LTR ERVL 1 192 -252 1034 224 4 12 chr4 37639397 37639652 -164688695 - AluSx SINE Alu -59 253 1 214 212 47 24 chr4 37640582 37640667 -164687680 + (TATATG)n Simple_repeat Simple_repeat 5 91 0 283 350 84 7 chr4 37642557 37642700 -164685647 + L3 LINE CR1 1232 1385 -192 1675 151 0 14 chr4 37642749 37643033 -164685314 + AluY SINE Alu 1 280 -31 624 347 19 0 chr4 37643200 37643416 -164684931 + MIR SINE MIR 22 241 -21 3399 32 0 0 chr4 37643722 37644128 -164684219 - L1PA4 LINE L1 0 6155 5750 2258 103 0 3 chr4 37644363 37644663 -164683684 + AluSx SINE Alu 1 299 -13 23 33 0 0 chr4 37644944 37644974 -164683373 + AT_rich Low_complexity Low_complexity 1 30 0 303 166 20 40 chr4 37646010 37646161 -164682186 + (TTATA)n Simple_repeat Simple_repeat 1 148 0 2259 100 0 3 chr4 37648129 37648430 -164679917 - AluSc SINE Alu -9 300 1 623 320 93 22 chr4 37648801 37649261 -164679086 + HsTC2a DNA Tc2 44 536 -208 330 118 0 0 chr4 37649262 37649313 -164679034 - MADE1 DNA Mariner 0 80 30 279 277 0 0 chr4 37649369 37649434 -164678913 + MIR SINE MIR 173 237 -25 326 303 45 39 chr4 37649444 37649599 -164678748 - MIR SINE MIR -105 157 2 455 343 53 5 chr4 37650292 37650499 -164677848 + L2 LINE L2 2934 3150 -163 1364 133 0 19 chr4 37650524 37650735 -164677612 + MSTA LTR MaLR 220 426 -2 276 257 46 55 chr4 37650764 37650873 -164677474 + L2 LINE L2 3148 3255 -58 360 0 0 0 chr4 37650939 37650979 -164677368 + (TG)n Simple_repeat Simple_repeat 2 41 0 2005 138 0 3 chr4 37653705 37653995 -164674352 - AluSg SINE Alu -19 291 3 484 292 65 6 chr4 37655979 37656147 -164672200 + MIR SINE MIR 71 248 -14 245 98 24 0 chr4 37656498 37656539 -164671808 - MER54A LTR ERVL -2 899 858 1268 156 9 4 chr4 37656550 37656781 -164671566 - L1PA16 LINE L1 -10 6156 5925 1162 195 18 0 chr4 37656831 37657052 -164671295 - MER54B LTR ERVL -30 763 539 323 185 33 65 chr4 37657184 37657276 -164671071 - MER54B LTR ERVL -224 569 481 1841 59 98 0 chr4 37658193 37658447 -164669900 + AluY SINE Alu 1 279 -32 498 33 0 0 chr4 37658447 37658507 -164669840 + (GA)n Simple_repeat Simple_repeat 1 60 0 2294 100 3 0 chr4 37659893 37660202 -164668145 + AluSp SINE Alu 1 310 -3 243 331 71 26 chr4 37660670 37660824 -164667523 - MIR SINE MIR -30 232 72 35 54 0 0 chr4 37661565 37661621 -164666726 + AT_rich Low_complexity Low_complexity 1 56 0 220 300 62 0 chr4 37661909 37661989 -164666358 + L2 LINE L2 1902 1986 -1328 1005 171 6 0 chr4 37661991 37662161 -164666186 + FRAM SINE Alu 1 163 -13 1158 50 0 0 chr4 37662228 37662369 -164665978 - L1PA3 LINE L1 -3 6152 6012 1051 257 24 10 chr4 37662524 37662708 -164665639 + MLT1A2 LTR MaLR 1 192 -182 279 0 0 0 chr4 37662708 37662739 -164665608 + (TC)n Simple_repeat Simple_repeat 2 32 0 1051 257 24 10 chr4 37662739 37662850 -164665497 + MLT1A2 LTR MaLR 192 300 -74 234 0 0 0 chr4 37662853 37662879 -164665468 + (TA)n Simple_repeat Simple_repeat 2 27 0 1215 98 0 27 chr4 37662882 37663065 -164665282 + AluSq SINE Alu 31 208 -105 445 330 52 11 chr4 37663348 37663539 -164664808 + MIR SINE MIR 20 218 -44 1996 131 0 44 chr4 37663705 37664026 -164664321 - AluSx SINE Alu -3 309 3 752 349 124 18 chr4 37664028 37664735 -164663612 + L2 LINE L2 1751 2532 -782 1495 302 61 33 chr4 37664785 37665358 -164662989 + MLT1G1 LTR MaLR 7 595 0 188 391 23 16 chr4 37665370 37665498 -164662849 + L2 LINE L2 2596 2724 -590 1461 134 0 57 chr4 37665865 37666127 -164662220 - Tigger5 DNA MER2_type 0 2323 2077 394 298 98 4 chr4 37666230 37666465 -164661882 - L1ME2 LINE L1 -163 5935 5679 367 285 109 78 chr4 37666471 37666812 -164661535 - L1ME2 LINE L1 -2098 3982 3653 2495 65 0 3 chr4 37666812 37667119 -164661228 - AluY SINE Alu -5 306 1 367 285 109 78 chr4 37667119 37668135 -164660212 - L1ME2 LINE L1 -2427 3653 2582 11329 188 22 29 chr4 37668337 37670613 -164657734 + ERVL-D LTR ERVL 3459 5719 -45 376 153 42 0 chr4 37670618 37670690 -164657657 + ERVL-D LTR ERVL 5685 5759 -5 799 216 92 26 chr4 37670693 37670920 -164657427 + MLT2D LTR ERVL 6 247 -167 333 229 172 25 chr4 37671065 37671143 -164657204 + MLT2D LTR ERVL 275 340 -74 330 26 0 0 chr4 37671143 37671182 -164657165 + (CA)n Simple_repeat Simple_repeat 2 40 0 333 229 172 25 chr4 37671182 37671225 -164657122 + MLT2D LTR ERVL 340 414 0 369 269 95 65 chr4 37671274 37671612 -164656735 - L1ME2 LINE L1 -3671 2409 2062 23 54 0 0 chr4 37671684 37671721 -164656626 + AT_rich Low_complexity Low_complexity 1 37 0 32 26 0 0 chr4 37671887 37671926 -164656421 + AT_rich Low_complexity Low_complexity 1 39 0 266 267 96 20 chr4 37671986 37672132 -164656215 - L1ME2 LINE L1 -4527 1734 1578 201 39 0 0 chr4 37672215 37672241 -164656106 + (TA)n Simple_repeat Simple_repeat 1 26 0 1421 279 58 43 chr4 37672336 37673367 -164654980 - L1ME2 LINE L1 -4924 1158 253 4608 21 0 0 chr4 37673446 37673977 -164654370 - L1PA3 LINE L1 -3 6152 5622 18085 36 1 6 chr4 37673977 37676246 -164652101 + L1P LINE L1 1163 3420 -2726 7744 25 0 0 chr4 37677014 37677913 -164650434 - L1PA3 LINE L1 -3 6152 5254 265 286 12 0 chr4 37678558 37678642 -164649705 + HERVL LTR ERVL 3443 3527 -2127 2151 139 0 0 chr4 37679753 37680062 -164648285 + AluSx SINE Alu 1 309 -3 2066 141 0 0 chr4 37682888 37683187 -164645160 + AluSg SINE Alu 7 305 -5 2020 152 35 16 chr4 37683415 37683783 -164644564 - THE1C LTR MaLR 0 375 1 201 202 11 22 chr4 37684351 37684440 -164643907 + (TA)n Simple_repeat Simple_repeat 1 88 0 282 56 0 0 chr4 37684446 37684482 -164643865 + (TG)n Simple_repeat Simple_repeat 2 37 0 245 313 143 9 chr4 37684499 37684611 -164643736 + L2 LINE L2 3185 3311 -2 1879 162 32 24 chr4 37685494 37685865 -164642482 - THE1C LTR MaLR 0 375 2 8503 153 39 34 chr4 37685866 37687438 -164640909 - THE1C-int LTR MaLR 0 1580 1 1919 126 23 78 chr4 37687438 37687515 -164640832 - THE1C LTR MaLR 0 375 295 243 0 0 0 chr4 37687515 37687542 -164640805 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2086 87 0 28 chr4 37687544 37687831 -164640516 - AluY SINE Alu -32 279 1 1919 126 23 78 chr4 37687831 37688147 -164640200 - THE1C LTR MaLR -81 294 1 217 260 0 130 chr4 37688487 37688610 -164639737 + MIR SINE MIR 25 131 -77 235 342 51 17 chr4 37689859 37689976 -164638371 - MER5A DNA MER1_type -6 183 63 22 0 0 0 chr4 37689976 37689998 -164638349 + AT_rich Low_complexity Low_complexity 1 22 0 316 270 13 97 chr4 37690019 37690256 -164638091 - L2 LINE L2 -78 3235 3019 26 74 0 0 chr4 37690864 37690918 -164637429 + AT_rich Low_complexity Low_complexity 1 54 0 2825 100 18 5 chr4 37691173 37691572 -164636775 + MLT2A1 LTR ERVL 1 404 -40 311 318 0 0 chr4 37691572 37691660 -164636687 + L1MC4 LINE L1 6616 6703 -1339 235 222 19 0 chr4 37691677 37691731 -164636616 + MLT2A2 LTR ERVL 399 453 0 35246 101 9 12 chr4 37691731 37696681 -164631666 + HERVL-A2-A1 LTR ERVL 1 4937 -717 537 114 0 0 chr4 37696681 37696760 -164631587 + AluY SINE Alu 215 293 -18 4472 218 1 8 chr4 37696760 37697491 -164630856 + HERVL-A2-A1 LTR ERVL 4929 5654 0 3042 108 23 2 chr4 37697491 37697926 -164630421 + MLT2A1 LTR ERVL 1 444 0 31 88 0 0 chr4 37698008 37698088 -164630259 + AT_rich Low_complexity Low_complexity 1 80 0 323 340 73 0 chr4 37698403 37698609 -164629738 - LTR33 LTR ERVL -2 519 299 715 229 42 95 chr4 37698860 37699197 -164629150 - MLT1D LTR MaLR -6 499 181 2037 242 26 4 chr4 37699549 37700011 -164628336 + MER70A LTR ERVL 1 472 0 1581 151 148 75 chr4 37700244 37700642 -164627705 - MSTA LTR MaLR -1 427 1 634 143 0 9 chr4 37700642 37700754 -164627593 - MSTA-int LTR MaLR 0 1580 1470 5354 131 4 50 chr4 37700770 37701473 -164626874 + L1PA12 LINE L1 5263 5915 -253 2163 102 0 3 chr4 37701473 37701794 -164626553 + AluY SINE Alu 1 320 0 5354 131 4 50 chr4 37701794 37702036 -164626311 + L1PA12 LINE L1 5915 6166 -2 8002 182 6 34 chr4 37702046 37703564 -164624783 - MSTA-int LTR MaLR -102 1478 3 1749 158 103 79 chr4 37703566 37703984 -164624363 - MSTA LTR MaLR 0 428 1 23 78 0 0 chr4 37703987 37704038 -164624309 + AT_rich Low_complexity Low_complexity 1 51 0 2031 147 3 3 chr4 37704418 37704730 -164623617 + AluSx SINE Alu 1 312 0 243 252 41 32 chr4 37705343 37705466 -164622881 + L1MA9 LINE L1 6151 6274 -38 264 158 0 0 chr4 37705633 37705690 -164622657 + (TCCA)n Simple_repeat Simple_repeat 2 58 0 306 215 0 15 chr4 37705694 37705759 -164622588 + MIR SINE MIR 196 259 -3 524 164 9 0 chr4 37706015 37706125 -164622222 + (TAGA)n Simple_repeat Simple_repeat 3 113 0 22 56 0 0 chr4 37706747 37706783 -164621564 + AT_rich Low_complexity Low_complexity 1 36 0 2358 85 0 3 chr4 37707067 37707372 -164620975 + AluY SINE Alu 2 305 -6 403 325 123 0 chr4 37707464 37707627 -164620720 - L2 LINE L2 -2274 1040 858 364 175 62 38 chr4 37708913 37708993 -164619354 + MIR SINE MIR 181 262 0 224 305 0 12 chr4 37709269 37709351 -164618996 + MIR SINE MIR 112 192 -70 1513 223 130 66 chr4 37710388 37710979 -164617368 + MER92B LTR ERV1 7 635 -1 209 369 12 12 chr4 37711083 37711167 -164617180 + MIR SINE MIR 18 101 -107 955 73 0 0 chr4 37711628 37711752 -164616595 - L1PB1 LINE L1 -1 6866 6743 12649 176 59 14 chr4 37711752 37717602 -164610745 - L1PB1 LINE L1 -706 6161 1 239 295 53 11 chr4 37717630 37717725 -164610622 + MIR SINE MIR 118 216 -46 6314 159 9 27 chr4 37719173 37721045 -164607302 - L1PA14 LINE L1 -3 6158 4331 2091 88 0 20 chr4 37721045 37721339 -164607008 - AluY SINE Alu -23 288 1 6314 159 9 27 chr4 37721339 37721586 -164606761 - L1PA14 LINE L1 -1830 4331 4081 187 297 27 27 chr4 37721599 37721673 -164606674 + MIR3 SINE MIR 104 177 -31 1647 124 29 7 chr4 37721733 37722008 -164606339 + L1MA4A LINE L1 6011 6291 -12 23 68 0 0 chr4 37722008 37722052 -164606295 + AT_rich Low_complexity Low_complexity 1 44 0 1509 226 46 3 chr4 37722300 37722650 -164605697 - MLT1A1 LTR MaLR 0 365 1 185 364 16 50 chr4 37722978 37723099 -164605248 + MIR SINE MIR 90 206 -56 1924 151 0 10 chr4 37723905 37724217 -164604130 - AluSx SINE Alu -2 310 2 924 116 0 41 chr4 37724535 37724681 -164603666 + FRAM SINE Alu 29 168 -8 289 229 89 8 chr4 37725513 37725641 -164602706 - MER67B LTR ERV1 0 661 325 * 959 210 14 88 chr4 37725621 37725916 -164602431 - MER31A LTR ERV1 -212 273 1 28 0 0 0 chr4 37726622 37726650 -164601697 + AT_rich Low_complexity Low_complexity 1 28 0 4759 174 68 17 chr4 37728471 37728675 -164599672 + L1MA8 LINE L1 5095 5287 -1004 195 42 0 0 chr4 37728675 37728699 -164599648 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 4759 174 68 17 chr4 37728699 37729644 -164598703 + L1MA8 LINE L1 5287 6288 -3 302 331 73 50 chr4 37730068 37730095 -164598252 - L1M4 LINE L1 -2227 3919 3894 2195 90 17 10 chr4 37730095 37730395 -164597952 + AluSg1 SINE Alu 1 302 -7 302 331 73 50 chr4 37730395 37730748 -164597599 - L1M4 LINE L1 -2252 3894 3530 1633 126 3 90 chr4 37731239 37731561 -164596786 + AluSc SINE Alu 4 299 0 1757 213 31 33 chr4 37733104 37733527 -164594820 + MSTB LTR MaLR 1 422 -4 298 277 0 0 chr4 37733933 37734016 -164594331 + (TA)n Simple_repeat Simple_repeat 2 84 0 1706 161 34 47 chr4 37734079 37734459 -164593888 - THE1C LTR MaLR 0 375 1 26 30 0 0 chr4 37734863 37734896 -164593451 + AT_rich Low_complexity Low_complexity 1 33 0 24 32 0 0 chr4 37735261 37735292 -164593055 + AT_rich Low_complexity Low_complexity 1 31 0 231 125 0 0 chr4 37735382 37735422 -164592925 + (TG)n Simple_repeat Simple_repeat 2 41 0 22 0 0 0 chr4 37735831 37735853 -164592494 + AT_rich Low_complexity Low_complexity 1 22 0 1071 209 80 51 chr4 37736060 37736235 -164592112 + MLT1B LTR MaLR 5 173 -217 348 24 0 0 chr4 37736235 37736276 -164592071 + (TC)n Simple_repeat Simple_repeat 2 42 0 1071 209 80 51 chr4 37736276 37736474 -164591873 + MLT1B LTR MaLR 173 389 -1 314 307 35 9 chr4 37737705 37737819 -164590528 + MIR SINE MIR 73 189 -73 25 0 0 0 chr4 37737901 37737926 -164590421 + AT_rich Low_complexity Low_complexity 1 25 0 2373 87 3 0 chr4 37738537 37738848 -164589499 + AluSp SINE Alu 2 313 0 580 313 58 10 chr4 37739389 37739597 -164588750 + LTR33 LTR ERVL 1 218 -303 22 88 0 0 chr4 37739734 37739791 -164588556 + AT_rich Low_complexity Low_complexity 1 57 0 21 71 0 0 chr4 37740294 37740336 -164588011 + AT_rich Low_complexity Low_complexity 1 42 0 2279 162 78 14 chr4 37740483 37740908 -164587439 + L1PA16 LINE L1 5706 6157 -9 1126 204 15 27 chr4 37742564 37742824 -164585523 + AluJo SINE Alu 9 265 -47 22 35 0 0 chr4 37742903 37742932 -164585415 + AT_rich Low_complexity Low_complexity 1 29 0 2044 121 3 7 chr4 37743004 37743301 -164585046 - AluSx SINE Alu -16 296 1 585 228 12 47 chr4 37744261 37744432 -164583915 + MIR SINE MIR 42 206 -56 2177 108 3 3 chr4 37744442 37744737 -164583610 - AluSx SINE Alu -17 295 1 2103 128 7 3 chr4 37744774 37745080 -164583267 - AluSx SINE Alu -5 307 1 228 336 27 48 chr4 37745373 37745519 -164582828 - L2 LINE L2 -9 3304 3162 23 0 0 0 chr4 37746018 37746041 -164582306 + AT_rich Low_complexity Low_complexity 1 23 0 11329 153 113 15 chr4 37746043 37748176 -164580171 + Tigger1 DNA MER2_type 3 2345 -73 437 261 9 17 chr4 37748181 37748296 -164580051 + MIR SINE MIR 119 232 -30 23 33 0 0 chr4 37748660 37748690 -164579657 + AT_rich Low_complexity Low_complexity 1 30 0 2394 84 0 3 chr4 37748723 37749034 -164579313 + AluY SINE Alu 1 310 -1 986 250 67 89 chr4 37749084 37749437 -164578910 - MLT1E LTR MaLR 0 632 286 2797 181 63 12 chr4 37749474 37750048 -164578299 + L1MC1 LINE L1 5605 6207 -126 22 35 0 0 chr4 37751575 37751604 -164576743 + AT_rich Low_complexity Low_complexity 1 29 0 898 264 59 15 chr4 37751760 37752033 -164576314 + MER34 LTR ERV1 1 285 -257 792 140 87 0 chr4 37752081 37752231 -164576116 + MER34 LTR ERV1 380 542 0 24 100 0 0 chr4 37752705 37752785 -164575562 + AT_rich Low_complexity Low_complexity 1 80 0 453 345 49 30 chr4 37753224 37753528 -164574819 + MLT1I LTR MaLR 100 409 0 1646 79 9 0 chr4 37753838 37754066 -164574281 + L1PA8 LINE L1 5942 6171 -1 514 337 32 28 chr4 37754445 37754694 -164573653 + MIR SINE MIR 13 262 0 191 152 30 0 chr4 37754920 37754953 -164573394 + L2 LINE L2 3224 3257 -15 276 30 0 0 chr4 37755260 37755293 -164573054 + (TG)n Simple_repeat Simple_repeat 2 34 0 865 330 105 50 chr4 37755934 37756904 -164571443 + L2 LINE L2 2310 3313 0 1986 114 14 4 chr4 37757510 37757812 -164570535 + AluSq SINE Alu 1 305 0 244 312 33 5 chr4 37758055 37758153 -164570194 + MIR SINE MIR 56 146 -62 2205 122 11 8 chr4 37758704 37759056 -164569291 + THE1A LTR MaLR 3 355 0 11008 106 7 6 chr4 37759056 37760634 -164567713 + THE1A-int LTR MaLR 1 1580 0 1881 116 13 121 chr4 37760634 37761032 -164567315 + THE1A LTR MaLR 1 355 0 256 304 65 49 chr4 37761209 37761393 -164566954 + MER102b DNA MER1_type 145 331 -10 2227 122 6 42 chr4 37761610 37761970 -164566377 - THE1B LTR MaLR -17 347 1 206 182 0 23 chr4 37761998 37762042 -164566305 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 200 277 0 0 chr4 37762306 37762353 -164565994 + (CA)n Simple_repeat Simple_repeat 1 47 0 22 0 0 0 chr4 37762615 37762637 -164565710 + AT_rich Low_complexity Low_complexity 1 22 0 22 70 0 0 chr4 37762950 37762993 -164565354 + AT_rich Low_complexity Low_complexity 1 43 0 312 248 74 13 chr4 37763794 37763943 -164564404 - L1MA10 LINE L1 -8 6326 6169 1144 225 3 5 chr4 37764121 37764369 -164563978 - L1PA16 LINE L1 -7 6167 5923 472 202 0 0 chr4 37765128 37765212 -164563135 + LTR29 LTR ERV1 464 547 -75 21 0 0 0 chr4 37765597 37765618 -164562729 + AT_rich Low_complexity Low_complexity 1 21 0 21 82 0 0 chr4 37765733 37765782 -164562565 + AT_rich Low_complexity Low_complexity 1 49 0 332 231 0 0 chr4 37766025 37766103 -164562244 + L1MA10 LINE L1 6250 6327 -7 1431 186 3 41 chr4 37766468 37766784 -164561563 - AluJo SINE Alu 0 307 3 22 80 0 0 chr4 37767397 37767447 -164560900 + AT_rich Low_complexity Low_complexity 1 50 0 28 0 0 0 chr4 37767712 37767740 -164560607 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr4 37768271 37768299 -164560048 + AT_rich Low_complexity Low_complexity 1 28 0 225 243 9 122 chr4 37768575 37768682 -164559665 + L2 LINE L2 3171 3265 -7 21 0 0 0 chr4 37768966 37768987 -164559360 + AT_rich Low_complexity Low_complexity 1 21 0 13034 105 7 0 chr4 37768995 37771718 -164556629 + L1PA7 LINE L1 3357 6146 -8 231 114 0 0 chr4 37771819 37771854 -164556493 + (TA)n Simple_repeat Simple_repeat 1 35 0 249 57 0 0 chr4 37772103 37772138 -164556209 + (CA)n Simple_repeat Simple_repeat 2 36 0 29 104 0 0 chr4 37774244 37774350 -164553997 + AT_rich Low_complexity Low_complexity 1 106 0 306 272 111 12 chr4 37774449 37774530 -164553817 - L2 LINE L2 0 3313 3225 280 239 228 54 chr4 37774714 37774881 -164553466 + L2 LINE L2 3113 3308 -5 31 0 0 0 chr4 37775298 37775329 -164553018 + AT_rich Low_complexity Low_complexity 1 31 0 417 354 128 10 chr4 37775475 37775763 -164552584 - L2 LINE L2 -42 3271 2950 417 129 0 0 chr4 37775765 37775827 -164552520 + L1 LINE L1 3787 3848 -2298 645 174 0 23 chr4 37775842 37775974 -164552373 + L1PB4 LINE L1 6027 6155 -1 21 82 0 0 chr4 37777880 37777929 -164550418 + AT_rich Low_complexity Low_complexity 1 49 0 1179 194 127 8 chr4 37778095 37778363 -164549984 + AluJb SINE Alu 1 300 -2 1877 104 15 4 chr4 37778522 37778782 -164549565 - AluSg SINE Alu -25 285 23 229 253 32 32 chr4 37779477 37779572 -164548775 + (CAGAGA)n Simple_repeat Simple_repeat 2 96 0 214 276 35 0 chr4 37781341 37781399 -164546948 + L3 LINE CR1 86 145 -1432 405 229 41 41 chr4 37781622 37781792 -164546555 + MER104 DNA Tc2 10 179 -1 330 288 149 42 chr4 37782102 37782317 -164546030 - MIR SINE MIR -4 258 21 529 215 31 110 chr4 37782547 37782738 -164545609 + MLT1D LTR MaLR 1 176 -329 1602 169 78 36 chr4 37782738 37783098 -164545249 + THE1C LTR MaLR 1 375 0 6738 148 62 45 chr4 37783100 37784381 -164543966 + THE1C-int LTR MaLR 3 1304 -276 1075 127 41 15 chr4 37784664 37784861 -164543486 + THE1C-int LTR MaLR 1379 1580 0 1532 146 64 67 chr4 37784861 37785237 -164543110 + THE1C LTR MaLR 1 375 0 916 266 33 7 chr4 37785260 37785535 -164542812 + MLT1D LTR MaLR 224 505 0 23 0 0 0 chr4 37786800 37786823 -164541524 + AT_rich Low_complexity Low_complexity 1 23 0 195 182 0 0 chr4 37786968 37787001 -164541346 + L2 LINE L2 3221 3253 -19 1315 180 13 72 chr4 37788224 37788529 -164539818 + AluJo SINE Alu 1 287 -25 460 332 25 5 chr4 37788935 37789137 -164539210 - MIR SINE MIR -54 208 3 1521 210 60 9 chr4 37790192 37790539 -164537808 - MLT1A1 LTR MaLR 0 365 1 27 49 0 0 chr4 37790597 37790638 -164537709 + AT_rich Low_complexity Low_complexity 1 41 0 23 0 0 0 chr4 37790924 37790947 -164537400 + AT_rich Low_complexity Low_complexity 1 23 0 250 299 125 14 chr4 37791895 37792039 -164536308 + MIR SINE MIR 47 206 -56 333 0 0 0 chr4 37793053 37793090 -164535257 + (CA)n Simple_repeat Simple_repeat 2 38 0 1970 191 4 71 chr4 37793090 37793552 -164534795 - Tigger2a DNA MER2_type -3 431 1 258 146 21 0 chr4 37793552 37793600 -164534747 + (TA)n Simple_repeat Simple_repeat 2 50 0 673 175 23 6 chr4 37793607 37793784 -164534563 + (CATATA)n Simple_repeat Simple_repeat 1 180 0 229 232 30 71 chr4 37793868 37793967 -164534380 - L2 LINE L2 -67 3246 3152 1295 179 64 92 chr4 37794672 37795263 -164533084 - MER67C LTR ERV1 -4 510 1 1261 227 59 81 chr4 37795333 37795794 -164532553 - MLT1C LTR MaLR 0 467 1 21 0 0 0 chr4 37796681 37796702 -164531645 + AT_rich Low_complexity Low_complexity 1 21 0 2324 121 21 16 chr4 37796901 37797273 -164531074 + THE1C LTR MaLR 1 374 -1 8047 153 54 7 chr4 37797274 37798637 -164529710 + THE1C-int LTR MaLR 1 1427 -153 4818 160 19 19 chr4 37798783 37799747 -164528600 + L1M1 LINE L1 2535 3498 -4067 2643 201 13 12 chr4 37799747 37800673 -164527674 + L1PB3 LINE L1 4846 5772 -382 240 111 0 0 chr4 37800881 37800917 -164527430 + (TG)n Simple_repeat Simple_repeat 2 37 0 2005 155 8 44 chr4 37800928 37801314 -164527033 + L1PB3 LINE L1 5782 6153 -1 271 290 45 0 chr4 37801329 37801484 -164526863 + L1M1 LINE L1 3669 3830 -3735 7810 240 52 41 chr4 37801521 37802181 -164526166 + L1M1 LINE L1 3970 4621 -3211 948 26 0 0 chr4 37802181 37802295 -164526052 - L1PA3 LINE L1 -2 6153 6040 7810 240 52 41 chr4 37802295 37804406 -164523941 + L1M1 LINE L1 4621 6805 -1027 1672 130 93 31 chr4 37804406 37804759 -164523588 - THE1C LTR MaLR 0 375 1 7810 240 52 41 chr4 37804759 37805042 -164523305 + L1M1 LINE L1 6805 7083 -749 355 295 98 0 chr4 37805134 37805246 -164523101 + L2 LINE L2 3191 3313 0 36 23 0 0 chr4 37806674 37806717 -164521630 + AT_rich Low_complexity Low_complexity 1 43 0 447 355 88 37 chr4 37806859 37807053 -164521294 + L2 LINE L2 2489 2672 -600 1129 288 51 3 chr4 37807053 37807407 -164520940 + MLT1A2 LTR MaLR 4 374 0 447 355 88 37 chr4 37807407 37807755 -164520592 + L2 LINE L2 2672 3053 -219 521 108 161 11 chr4 37807836 37807929 -164520418 + MSTA LTR MaLR 1 107 -321 1193 191 57 15 chr4 37808039 37808301 -164520046 + MLT1B LTR MaLR 114 386 -4 * 1710 199 29 0 chr4 37808299 37808640 -164519707 + MER67C LTR ERV1 356 706 -4 239 294 69 29 chr4 37809002 37809104 -164519243 + MIR SINE MIR 46 151 -111 360 326 0 0 chr4 37809309 37809404 -164518943 - L2 LINE L2 -27 3286 3192 192 264 132 0 chr4 37809726 37809779 -164518568 + L2 LINE L2 2925 2984 -329 255 350 120 42 chr4 37811260 37811686 -164516661 - L2 LINE L2 -50 3263 2805 4332 177 17 9 chr4 37812122 37813508 -164514839 - L1PA16 LINE L1 -1 6165 4757 220 172 35 0 chr4 37813531 37813589 -164514758 + (TA)n Simple_repeat Simple_repeat 1 60 0 2218 185 15 3 chr4 37813603 37814070 -164514277 - L1M3b LINE L1 -4616 2880 2053 370 167 0 0 chr4 37814276 37814336 -164514011 + AluSp/q SINE Alu 241 300 -3 630 127 24 8 chr4 37814346 37814472 -164513875 + GA-rich Low_complexity Low_complexity 4 131 0 5651 217 12 14 chr4 37814478 37816322 -164512025 - L1 LINE L1 -2508 5057 3217 587 334 135 42 chr4 37816453 37817211 -164511136 + L2 LINE L2 1532 2359 -955 668 200 8 0 chr4 37817280 37817405 -164510942 - FLAM_C SINE Alu -17 126 1 431 327 48 57 chr4 37817471 37817804 -164510543 + L2 LINE L2 2929 3258 -55 2781 13 0 0 chr4 37817830 37818139 -164510208 + AluYb8 SINE Alu 1 309 -9 291 345 17 9 chr4 37818164 37818280 -164510067 + MIR SINE MIR 38 154 -108 333 301 75 27 chr4 37818447 37818593 -164509754 - MIR SINE MIR -7 255 103 21 36 0 0 chr4 37819529 37819557 -164508790 + AT_rich Low_complexity Low_complexity 1 28 0 251 190 20 20 chr4 37819783 37819883 -164508464 + (TA)n Simple_repeat Simple_repeat 1 100 0 774 143 24 0 chr4 37819950 37820076 -164508271 + MLT2B1 LTR ERVL 1 129 -391 261 0 0 0 chr4 37820170 37820199 -164508148 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 500 261 69 0 chr4 37820535 37820703 -164507644 - L1ME3A LINE L1 -180 5982 5803 2253 306 70 18 chr4 37820881 37821971 -164506376 + L1MEc LINE L1 5 1150 -5246 352 257 53 0 chr4 37821967 37822080 -164506267 + L1MB1 LINE L1 6033 6151 -38 * 574 242 160 57 chr4 37822125 37822443 -164505904 + L1ME1 LINE L1 5812 6162 -4 384 22 0 0 chr4 37822814 37822859 -164505488 + (TAGA)n Simple_repeat Simple_repeat 4 48 0 293 311 0 82 chr4 37822944 37823066 -164505281 + L2 LINE L2 3202 3313 0 1547 92 8 52 chr4 37823447 37823697 -164504650 + L1PA13 LINE L1 5918 6156 -7 21 36 0 0 chr4 37824405 37824433 -164503914 + AT_rich Low_complexity Low_complexity 1 28 0 23 78 0 0 chr4 37826286 37826337 -164502010 + AT_rich Low_complexity Low_complexity 1 51 0 1691 211 31 86 chr4 37826542 37826584 -164501763 - MLT2B1 LTR ERVL 0 520 477 321 47 0 0 chr4 37826584 37826627 -164501720 + (CA)n Simple_repeat Simple_repeat 2 44 0 1691 211 31 86 chr4 37826627 37827134 -164501213 - MLT2B1 LTR ERVL -43 477 1 392 251 82 24 chr4 37827538 37827745 -164500602 - MER69 DNA AcHobo -114 2412 2194 22 0 0 0 chr4 37828090 37828112 -164500235 + AT_rich Low_complexity Low_complexity 1 22 0 664 207 0 0 chr4 37828548 37828669 -164499678 + AluJb SINE Alu 174 294 -18 3157 160 25 62 chr4 37828769 37828972 -164499375 - Tigger3(Golem) DNA MER2_type -2180 849 640 1526 130 5 0 chr4 37828972 37829195 -164499152 - AluSg/x SINE Alu -21 289 66 3157 160 25 62 chr4 37829195 37829624 -164498723 - Tigger3(Golem) DNA MER2_type -2389 640 240 7193 187 126 23 chr4 37829624 37831215 -164497132 + MER52A LTR ERV1 1 1755 0 1167 192 94 0 chr4 37831215 37831437 -164496910 - Tigger3(Golem) DNA MER2_type -2786 243 1 694 151 9 0 chr4 37831681 37831787 -164496560 + U6 snRNA snRNA 1 107 0 6101 88 16 33 chr4 37831787 37833552 -164494795 + L1PA11 LINE L1 4442 6167 -7 189 0 0 0 chr4 37833563 37833584 -164494763 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 465 189 41 41 chr4 37833964 37834086 -164494261 + LTR9 LTR ERV1 491 612 0 1221 206 13 0 chr4 37834202 37834435 -164493912 - MER46A DNA MER2_type 0 236 1 1623 140 47 4 chr4 37835076 37835333 -164493014 - THE1B LTR MaLR -96 268 1 23 92 0 0 chr4 37835518 37835583 -164492764 + AT_rich Low_complexity Low_complexity 1 65 0 1128 300 36 33 chr4 37835805 37836651 -164491696 - L1M4c LINE L1 -4705 1941 1099 1627 155 57 43 chr4 37836651 37837019 -164491328 + THE1C LTR MaLR 1 373 -2 1128 300 36 33 chr4 37837019 37837059 -164491288 - L1M4c LINE L1 -5547 1099 1061 457 48 0 0 chr4 37837151 37837213 -164491134 + L1PA6 LINE L1 6092 6153 -1 324 188 0 0 chr4 37837314 37837383 -164490964 + CT-rich Low_complexity Low_complexity 2 70 0 1878 139 71 8 chr4 37838074 37838427 -164489920 - THE1C LTR MaLR 0 375 1 22 70 0 0 chr4 37838507 37838550 -164489797 + AT_rich Low_complexity Low_complexity 1 43 0 211 319 58 0 chr4 37838603 37838672 -164489675 - L2 LINE L2 -4 3309 3237 266 290 28 85 chr4 37838752 37838928 -164489419 - MIR SINE MIR -13 249 84 201 315 8 100 chr4 37839037 37839167 -164489180 - L2 LINE L2 -17 3296 3179 1818 168 131 8 chr4 37839316 37839697 -164488650 + MSTA LTR MaLR 1 428 0 202 343 29 38 chr4 37840056 37840161 -164488186 + MIR SINE MIR 32 135 -73 255 312 164 21 chr4 37840990 37841179 -164487168 - MIR SINE MIR -44 218 3 345 47 0 0 chr4 37842262 37842305 -164486042 + (CA)n Simple_repeat Simple_repeat 2 44 0 1879 140 7 23 chr4 37842313 37842613 -164485734 - AluSx SINE Alu -17 295 1 21 0 0 0 chr4 37843723 37843744 -164484603 + AT_rich Low_complexity Low_complexity 1 21 0 4764 139 21 27 chr4 37843850 37844678 -164483669 - L1PA16 LINE L1 -2 6164 5338 355 330 91 24 chr4 37845114 37845323 -164483024 - MLT1I LTR MaLR -140 269 47 27 0 0 0 chr4 37846064 37846091 -164482256 + AT_rich Low_complexity Low_complexity 1 27 0 265 277 101 20 chr4 37846332 37846480 -164481867 - HAL1 LINE L1 -2285 222 63 309 26 0 0 chr4 37847219 37847257 -164481090 + (CA)n Simple_repeat Simple_repeat 2 39 0 13054 193 42 8 chr4 37848771 37851369 -164476978 - L1M1 LINE L1 -4873 2692 7 3465 176 47 41 chr4 37851811 37852591 -164475756 + LTR1 LTR ERV1 1 785 0 29 47 0 0 chr4 37852928 37852971 -164475376 + AT_rich Low_complexity Low_complexity 1 43 0 198 103 0 0 chr4 37853602 37853631 -164474716 + (TG)n Simple_repeat Simple_repeat 2 30 0 415 334 80 40 chr4 37853727 37854349 -164473998 + L1MEc LINE L1 88 734 -5662 1036 121 108 0 chr4 37854387 37854553 -164473794 - MER30 DNA MER1_type -46 184 1 692 286 68 13 chr4 37854567 37854948 -164473399 + L1MEc LINE L1 756 1157 -5239 22 35 0 0 chr4 37855778 37855807 -164472540 + AT_rich Low_complexity Low_complexity 1 29 0 426 69 0 0 chr4 37856691 37856749 -164471598 + (TG)n Simple_repeat Simple_repeat 2 59 0 1692 157 62 45 chr4 37857310 37857667 -164470680 + MLT2D LTR ERVL 1 363 -51 313 310 39 19 chr4 37857705 37857860 -164470487 - L2 LINE L2 -804 2510 2353 2126 221 30 14 chr4 37858028 37858462 -164469885 - MER70B LTR ERVL -137 441 1 552 279 153 50 chr4 37858470 37858543 -164469804 - L2 LINE L2 -1190 2124 2060 207 0 0 0 chr4 37858543 37858566 -164469781 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 552 279 153 50 chr4 37858566 37858833 -164469514 - L2 LINE L2 -1254 2060 1749 28 61 0 0 chr4 37858968 37859017 -164469330 + AT_rich Low_complexity Low_complexity 1 49 0 2494 83 23 0 chr4 37860075 37860423 -164467924 + L1PA7 LINE L1 5797 6152 -2 400 331 138 20 chr4 37860433 37860838 -164467509 + L1ME3A LINE L1 4814 5266 -880 524 320 62 28 chr4 37860857 37861423 -164466924 + L1ME3A LINE L1 5299 5883 -287 365 227 33 80 chr4 37862376 37862526 -164465821 - L1ME LINE L1 -361 5801 5659 342 267 44 65 chr4 37862573 37862862 -164465485 - L1ME LINE L1 -639 5523 5260 25 65 0 0 chr4 37864101 37864147 -164464200 + AT_rich Low_complexity Low_complexity 1 46 0 5419 135 64 72 chr4 37864357 37864924 -164463423 - Tigger3b DNA MER2_type -1798 1230 660 1618 128 34 4 chr4 37864924 37865190 -164463157 - AluSx SINE Alu -6 306 33 5419 135 64 72 chr4 37865190 37865863 -164462484 - Tigger3b DNA MER2_type -2368 660 1 21 36 0 0 chr4 37866092 37866120 -164462227 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr4 37866729 37866751 -164461596 + AT_rich Low_complexity Low_complexity 1 22 0 228 411 69 9 chr4 37867165 37867396 -164460951 + L2 LINE L2 728 972 -2342 209 398 0 9 chr4 37868017 37868125 -164460222 + L2 LINE L2 1245 1351 -1963 1600 251 107 81 chr4 37868218 37868908 -164459439 + MER21B LTR ERV1 1 708 -155 3119 133 2 12 chr4 37919526 37920024 -164408323 + L1P LINE L1 9 501 -5645 3013 238 40 48 chr4 37920124 37921580 -164406767 - L1 LINE L1 -1862 4520 2080 286 260 48 51 chr4 37921933 37922013 -164406334 + L1ME LINE L1 5411 5490 -694 1438 182 122 12 chr4 37922013 37922342 -164406005 - MLT1A1 LTR MaLR 0 365 1 286 260 48 51 chr4 37922342 37922430 -164405917 + L1ME LINE L1 5490 5577 -607 217 265 24 0 chr4 37922683 37922766 -164405581 + (TA)n Simple_repeat Simple_repeat 2 86 0 26 30 0 0 chr4 37922817 37922850 -164405497 + AT_rich Low_complexity Low_complexity 1 33 0 203 322 58 0 chr4 37923061 37923148 -164405199 - L2 LINE L2 -1606 1708 1617 1777 113 122 36 chr4 37923271 37923606 -164404741 + THE1B LTR MaLR 1 364 0 797 168 19 0 chr4 37923756 37923911 -164404436 - L1MB1 LINE L1 0 6168 6011 313 250 122 50 chr4 37924900 37925080 -164403267 + L1ME3A LINE L1 4309 4501 -1645 1817 149 4 0 chr4 37925080 37925355 -164402992 + AluSx SINE Alu 1 276 -36 397 348 123 10 chr4 37925654 37926045 -164402302 + L1ME3A LINE L1 4798 5232 -914 760 310 91 37 chr4 37926197 37927039 -164401308 + L1ME3A LINE L1 5257 6155 -15 22 0 0 0 chr4 37927045 37927067 -164401280 + AT_rich Low_complexity Low_complexity 1 22 0 2227 71 3 0 chr4 37927449 37927743 -164400604 - L1PA5 LINE L1 0 6154 5860 24 67 0 0 chr4 37928722 37928767 -164399580 + AT_rich Low_complexity Low_complexity 1 45 0 214 238 0 0 chr4 37929099 37929141 -164399206 + L2 LINE L2 3255 3296 -17 23 0 0 0 chr4 37929159 37929182 -164399165 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr4 37929237 37929261 -164399086 + AT_rich Low_complexity Low_complexity 1 24 0 28 48 0 0 chr4 37929288 37929330 -164399017 + AT_rich Low_complexity Low_complexity 1 42 0 1583 169 28 35 chr4 37930224 37930514 -164397833 - AluJb SINE Alu -22 290 3 2188 191 58 18 chr4 37930544 37931189 -164397158 + L1MC3 LINE L1 5186 5758 -586 360 322 109 35 chr4 37933132 37933334 -164395013 - L2 LINE L2 -1928 1386 1170 196 372 46 31 chr4 37934166 37934362 -164393985 + L3 LINE CR1 1345 1543 -34 238 367 61 14 chr4 37935249 37935396 -164392951 + MER117 DNA MER1_type 6 159 -38 23 33 0 0 chr4 37935583 37935613 -164392734 + AT_rich Low_complexity Low_complexity 1 30 0 2471 62 0 0 chr4 37935806 37936113 -164392234 + AluY SINE Alu 1 307 -4 31 26 0 0 chr4 37936745 37936783 -164391564 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr4 37936932 37936953 -164391394 + AT_rich Low_complexity Low_complexity 1 21 0 934 294 56 49 chr4 37937074 37937134 -164391213 - L1MEc LINE L1 -4329 2067 2009 2151 122 54 20 chr4 37937134 37937486 -164390861 + THE1B LTR MaLR 1 364 0 934 294 56 49 chr4 37937486 37938099 -164390248 - L1MEc LINE L1 -4387 2009 1389 2187 107 3 3 chr4 37938115 37938414 -164389933 - AluSp SINE Alu -14 299 1 378 319 46 74 chr4 37938567 37938893 -164389454 - L1ME4a LINE L1 -87 6034 5718 209 383 62 57 chr4 37939048 37939257 -164389090 - L2 LINE L2 -232 3040 2831 201 425 45 20 chr4 37941719 37941919 -164386428 + L2 LINE L2 421 625 -2689 288 70 0 0 chr4 37942078 37942121 -164386226 + (TTTTA)n Simple_repeat Simple_repeat 2 44 0 323 377 86 16 chr4 37942656 37942969 -164385378 - L2 LINE L2 -1 3312 2978 2054 138 35 0 chr4 37942972 37943312 -164385035 + L1PB4 LINE L1 5798 6149 -7 493 343 179 7 chr4 37943402 37943848 -164384499 - L2 LINE L2 -437 2877 2355 222 156 0 0 chr4 37944107 37944152 -164384195 + (CA)n Simple_repeat Simple_repeat 2 46 0 648 198 56 2 chr4 37944156 37944345 -164384002 - MER8 DNA MER2_type 0 239 1 190 363 12 12 chr4 37944754 37944834 -164383513 + MIR SINE MIR 89 168 -94 628 302 78 25 chr4 37945008 37945253 -164383094 - MIR SINE MIR -1 261 4 213 355 0 0 chr4 37945267 37945343 -164383004 + MIR SINE MIR 110 185 -77 34 42 0 0 chr4 37945379 37945427 -164382920 + AT_rich Low_complexity Low_complexity 1 48 0 21 36 0 0 chr4 37945447 37945475 -164382872 + AT_rich Low_complexity Low_complexity 1 28 0 1965 133 60 31 chr4 37945677 37946030 -164382317 - THE1B LTR MaLR -1 363 1 1316 143 60 0 chr4 37946449 37946666 -164381681 - MER30 DNA MER1_type 0 230 1 2044 150 21 47 chr4 37947192 37947572 -164380775 - THE1C LTR MaLR -5 370 1 29 28 0 0 chr4 37947756 37947792 -164380555 + AT_rich Low_complexity Low_complexity 1 36 0 25 51 0 0 chr4 37948458 37948497 -164379850 + AT_rich Low_complexity Low_complexity 1 39 0 33 90 0 0 chr4 37949606 37949695 -164378652 + AT_rich Low_complexity Low_complexity 1 89 0 24 32 0 0 chr4 37949728 37949759 -164378588 + AT_rich Low_complexity Low_complexity 1 31 0 319 213 0 0 chr4 37950221 37950282 -164378065 - MLT1D LTR MaLR -3 502 442 192 319 0 0 chr4 37951577 37951624 -164376723 - MER5B DNA MER1_type -129 49 3 264 322 111 17 chr4 37951744 37951924 -164376423 - MIR SINE MIR -48 214 18 225 94 0 0 chr4 37952516 37952548 -164375799 + (CA)n Simple_repeat Simple_repeat 2 33 0 348 64 0 0 chr4 37953349 37953396 -164374951 + (GA)n Simple_repeat Simple_repeat 2 48 0 1102 126 7 0 chr4 37954319 37954470 -164373877 - AluSg SINE Alu -147 163 12 920 138 0 0 chr4 37954470 37954608 -164373739 + AluSg/x SINE Alu 174 311 -1 21 36 0 0 chr4 37955936 37955964 -164372383 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr4 37956101 37956131 -164372216 + AT_rich Low_complexity Low_complexity 1 30 0 7694 21 0 0 chr4 37956131 37957536 -164370811 - L1PA2 LINE L1 -4 6151 4748 311 316 8 31 chr4 37958898 37959044 -164369303 + MLT1F LTR MaLR 93 240 -323 5861 174 36 32 chr4 37959044 37960804 -164367543 + L1MA8 LINE L1 4028 5789 -502 186 43 0 0 chr4 37960804 37960827 -164367520 + (CA)n Simple_repeat Simple_repeat 2 24 0 5861 174 36 32 chr4 37960827 37961007 -164367340 + L1MA8 LINE L1 5789 5967 -324 369 165 62 21 chr4 37961089 37961186 -164367161 + MLT1H1 LTR MaLR 449 549 -6 243 319 18 48 chr4 37961200 37961366 -164366981 - MLT1J1 LTR MaLR -268 178 18 1611 228 33 64 chr4 37961715 37962372 -164365975 - LTR29 LTR ERV1 0 653 1 278 287 61 55 chr4 37962489 37962653 -164365694 - MIR SINE MIR -6 256 92 240 350 20 30 chr4 37963040 37963140 -164365207 + L2 LINE L2 3197 3295 -18 36 23 0 0 chr4 37963527 37963570 -164364777 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr4 37965616 37965638 -164362709 + AT_rich Low_complexity Low_complexity 1 22 0 1274 234 68 25 chr4 37965919 37966313 -164362034 + MLT1D LTR MaLR 91 501 -4 25 31 0 0 chr4 37966640 37966672 -164361675 + AT_rich Low_complexity Low_complexity 1 32 0 503 221 47 21 chr4 37966732 37966892 -164361455 - L1ME2 LINE L1 -2 6160 5996 666 237 11 86 chr4 37966922 37967201 -164361146 - L1ME2 LINE L1 -389 5777 5520 3376 161 45 8 chr4 37967358 37967955 -164360392 - L1PA16 LINE L1 -79 6087 5469 2701 199 5 0 chr4 37967951 37968654 -164359693 + L1PA16 LINE L1 4786 5493 -673 * 751 307 129 8 chr4 37968657 37969129 -164359218 - L1ME2 LINE L1 -1828 4318 3790 1061 274 80 28 chr4 37969149 37969678 -164358669 + MER34B LTR ERV1 1 560 -4 500 319 46 67 chr4 37970024 37970178 -164358169 + HERVL LTR ERVL 3481 3637 -2017 2044 133 0 0 chr4 37970178 37970486 -164357861 + AluSx SINE Alu 3 310 0 500 319 46 67 chr4 37970486 37970805 -164357542 + HERVL LTR ERVL 3637 3946 -1708 313 350 44 28 chr4 37971665 37971896 -164356451 + HERVL LTR ERVL 4069 4275 -1379 1371 239 53 111 chr4 37971908 37972493 -164355854 - MLT1E2 LTR MaLR -10 616 94 736 340 79 44 chr4 37972565 37972842 -164355505 + HERVL LTR ERVL 4323 4589 -1175 1160 208 101 23 chr4 37972842 37973189 -164355158 + MLT1A2 LTR MaLR 1 374 0 736 340 79 44 chr4 37973189 37973593 -164354754 + HERVL LTR ERVL 4589 5028 -736 273 252 0 0 chr4 37973621 37973724 -164354623 + (TA)n Simple_repeat Simple_repeat 1 103 0 262 270 101 0 chr4 37974020 37974109 -164354238 - MIR SINE MIR -19 243 146 23 33 0 0 chr4 37974174 37974204 -164354143 + AT_rich Low_complexity Low_complexity 1 30 0 248 341 53 16 chr4 37974934 37975134 -164353213 + MIR SINE MIR 20 262 0 21 0 0 0 chr4 37975528 37975549 -164352798 + AT_rich Low_complexity Low_complexity 1 21 0 249 57 0 0 chr4 37976022 37976057 -164352290 + (TG)n Simple_repeat Simple_repeat 2 36 0 205 328 16 0 chr4 37976105 37976169 -164352178 - L2 LINE L2 -15 3257 3193 1922 148 0 10 chr4 37976188 37976486 -164351861 + AluSx SINE Alu 1 295 -17 21 0 0 0 chr4 37978457 37978478 -164349869 + AT_rich Low_complexity Low_complexity 1 21 0 710 212 15 64 chr4 37978843 37979046 -164349301 - L1MDa LINE L1 -6089 451 259 3587 225 47 22 chr4 37979161 37980028 -164348319 + L1MDa LINE L1 447 1335 -5205 599 258 35 55 chr4 37980058 37980403 -164347944 + L1MB8 LINE L1 4515 4852 -1294 233 214 14 29 chr4 37980397 37980467 -164347880 + L1MB8 LINE L1 5350 5418 -824 * 1319 224 61 12 chr4 37980573 37980917 -164347430 + L1MD1 LINE L1 5880 6240 -2 1979 149 0 0 chr4 37981238 37981534 -164346813 - AluSx SINE Alu -16 296 1 1323 238 179 9 chr4 37981700 37982230 -164346117 + L1MB8 LINE L1 5559 6178 0 329 354 70 9 chr4 37982232 37982447 -164345900 + L1ME4a LINE L1 5648 5875 -246 3505 41 5 0 chr4 37982458 37982898 -164345449 - L1PA4 LINE L1 -2441 3705 3264 13664 30 8 1 chr4 37982898 37985315 -164343032 + L1PA4 LINE L1 3720 6152 -3 226 49 24 24 chr4 37985413 37985454 -164342893 + (TA)n Simple_repeat Simple_repeat 2 42 0 4979 141 30 9 chr4 37986469 37987811 -164340536 + L1PA13 LINE L1 4789 6152 -11 336 322 49 0 chr4 37988025 37988168 -164340179 + MLT1H LTR MaLR 77 226 -323 202 221 29 15 chr4 37988751 37988819 -164339528 + T-rich Low_complexity Low_complexity 4 72 0 454 235 18 72 chr4 37988880 37989046 -164339301 + MLT1H LTR MaLR 386 542 -7 28 29 0 0 chr4 37989421 37989456 -164338891 + AT_rich Low_complexity Low_complexity 1 35 0 227 228 10 40 chr4 37989840 37989941 -164338406 + A-rich Low_complexity Low_complexity 2 99 0 806 305 41 19 chr4 37990269 37990754 -164337593 + L1ME LINE L1 497 992 -5404 359 287 71 71 chr4 37990800 37991238 -164337109 + L1ME LINE L1 1088 1528 -4868 2226 108 3 3 chr4 37991238 37991543 -164336804 + AluSq SINE Alu 1 305 -8 359 287 71 71 chr4 37991543 37991693 -164336654 + L1ME LINE L1 1527 1676 -4720 338 265 109 11 chr4 37991761 37991943 -164336404 + L1ME LINE L1 2751 2954 -3261 365 281 89 46 chr4 37991994 37992027 -164336320 + L1ME LINE L1 4929 4959 -1256 180 0 0 0 chr4 37992027 37992047 -164336300 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 365 281 89 46 chr4 37992047 37992362 -164335985 + L1ME LINE L1 4959 5292 -923 332 162 0 27 chr4 37992550 37992624 -164335723 + L1ME LINE L1 5397 5468 -763 2318 134 0 48 chr4 37992635 37993031 -164335316 - MER51B LTR ERV1 0 377 1 1279 138 138 21 chr4 37993031 37993330 -164335017 - MER1B DNA MER1_type -5 334 1 489 218 32 8 chr4 37993334 37993458 -164334889 + L1ME LINE L1 5467 5593 -640 233 299 81 11 chr4 37993773 37993860 -164334487 + MIR SINE MIR 164 256 -6 272 289 26 19 chr4 37993866 37994022 -164334325 + CT-rich Low_complexity Low_complexity 3 159 0 24 77 0 0 chr4 37995048 37995100 -164333247 + AT_rich Low_complexity Low_complexity 1 52 0 23 54 0 0 chr4 37995217 37995254 -164333093 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr4 37995264 37995286 -164333061 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr4 37996323 37996348 -164331999 + AT_rich Low_complexity Low_complexity 1 25 0 1956 166 33 61 chr4 37996433 37996991 -164331356 - MLT2A2 LTR ERVL -3 551 1 22 0 0 0 chr4 37996995 37997017 -164331330 + AT_rich Low_complexity Low_complexity 1 22 0 1481 190 3 42 chr4 37997974 37998263 -164330084 + AluJo SINE Alu 1 278 -34 22 35 0 0 chr4 37998596 37998625 -164329722 + AT_rich Low_complexity Low_complexity 1 29 0 1974 188 35 31 chr4 37998922 37999471 -164328876 + MLT2A2 LTR ERVL 1 554 0 4549 33 5 5 chr4 38000256 38000825 -164327522 - L1P LINE L1 -1395 4751 4183 3211 44 0 0 chr4 38000825 38001213 -164327134 + L1PA5 LINE L1 5764 6152 -2 881 170 0 0 chr4 38002293 38002440 -164325907 - AluSx SINE Alu -6 306 160 500 146 0 0 chr4 38002440 38002522 -164325825 - AluSx SINE Alu -231 82 1 243 293 0 0 chr4 38002547 38002622 -164325725 + (TAG)n Simple_repeat Simple_repeat 1 75 0 953 175 68 142 chr4 38002638 38002963 -164325384 - AluJo SINE Alu 0 302 2 293 0 27 0 chr4 38004139 38004176 -164324171 + (TAGA)n Simple_repeat Simple_repeat 4 41 0 343 314 60 43 chr4 38004479 38004664 -164323683 - MIR SINE MIR -1 261 74 1521 210 36 80 chr4 38004670 38005151 -164323196 + MLT1D LTR MaLR 5 463 -42 2325 55 7 0 chr4 38005151 38005444 -164322903 + AluY SINE Alu 1 295 -16 1521 210 36 80 chr4 38005444 38005486 -164322861 + MLT1D LTR MaLR 463 505 0 1560 213 3 0 chr4 38005526 38005812 -164322535 + AluJb SINE Alu 1 287 -25 357 345 9 0 chr4 38005831 38005941 -164322406 - L2 LINE L2 -15 3298 3188 334 239 22 33 chr4 38007275 38007367 -164320980 + MER20 DNA MER1_type 36 126 -93 273 116 0 0 chr4 38007359 38007402 -164320945 - MSTA LTR MaLR -371 57 15 * 24 53 0 0 chr4 38007449 38007487 -164320860 + AT_rich Low_complexity Low_complexity 1 38 0 1749 241 56 22 chr4 38007503 38007544 -164320803 - LTR40a LTR ERVL 0 519 481 2964 92 8 42 chr4 38007544 38008021 -164320326 - L1PA13 LINE L1 -1 6162 5702 1749 241 56 22 chr4 38008021 38008478 -164319869 - LTR40a LTR ERVL -38 481 4 24 0 0 0 chr4 38009302 38009326 -164319021 + AT_rich Low_complexity Low_complexity 1 24 0 1373 76 0 0 chr4 38009454 38009639 -164318708 - L1PA5 LINE L1 -2 6152 5968 23 54 0 0 chr4 38009713 38009750 -164318597 + AT_rich Low_complexity Low_complexity 1 37 0 219 300 50 0 chr4 38009943 38010003 -164318344 + L2 LINE L2 3190 3252 -61 234 308 13 0 chr4 38010025 38010103 -164318244 - MIR SINE MIR -67 195 117 405 0 0 0 chr4 38010855 38010900 -164317447 + (TG)n Simple_repeat Simple_repeat 2 46 0 2174 133 52 3 chr4 38012598 38012945 -164315402 + THE1B LTR MaLR 1 364 0 815 78 0 0 chr4 38013437 38013540 -164314807 - L1PA7 LINE L1 -26 6128 6026 * 6102 94 7 3 chr4 38013531 38014396 -164313951 - L1P LINE L1 -959 5187 4320 1175 108 0 0 chr4 38014391 38014557 -164313790 + L1P LINE L1 4141 4306 -1840 * 2134 77 7 7 chr4 38015175 38015486 -164312861 + AluY SINE Alu 1 311 0 489 191 21 15 chr4 38016020 38016214 -164312133 + L1MA7 LINE L1 6056 6280 -11 23 0 0 0 chr4 38016215 38016238 -164312109 + AT_rich Low_complexity Low_complexity 1 23 0 1876 155 134 8 chr4 38017000 38017380 -164310967 - MSTA LTR MaLR 0 428 1 252 167 0 0 chr4 38018515 38018563 -164309784 + (TA)n Simple_repeat Simple_repeat 2 49 0 2111 102 0 3 chr4 38018721 38019004 -164309343 - AluSx SINE Alu -30 282 1 247 367 0 0 chr4 38019380 38019489 -164308858 + LTR67 LTR ERVL 412 520 -37 384 291 51 61 chr4 38019611 38019907 -164308440 + HsTC2 DNA Tc2 491 783 -1115 1498 252 25 18 chr4 38020008 38020533 -164307814 + L1MCb LINE L1 702 1237 -4867 738 237 12 31 chr4 38020544 38020801 -164307546 + L1M4 LINE L1 3257 3508 -2638 1299 222 56 96 chr4 38021160 38021661 -164306686 - MLT1D LTR MaLR -2 503 23 449 315 72 18 chr4 38022353 38022575 -164305772 + MIR SINE MIR 8 241 -21 226 192 14 14 chr4 38022705 38022778 -164305569 + (TA)n Simple_repeat Simple_repeat 1 73 0 185 298 329 37 chr4 38023752 38023941 -164304406 - MIR SINE MIR 0 262 20 23 54 0 0 chr4 38024467 38024504 -164303843 + AT_rich Low_complexity Low_complexity 1 37 0 249 358 153 9 chr4 38025013 38025334 -164303013 - L2 LINE L2 -1093 2221 1855 1065 250 85 0 chr4 38025472 38025767 -164302580 + AluJo SINE Alu 1 317 0 219 357 101 33 chr4 38025811 38026147 -164302200 - L2 LINE L2 -1646 1668 1310 37620 40 2 3 chr4 38026895 38031212 -164297135 - L1PA3 LINE L1 0 6155 1838 2758 16 0 0 chr4 38031212 38031523 -164296824 + AluY SINE Alu 1 311 0 37620 40 2 3 chr4 38031523 38032647 -164295700 - L1PA3 LINE L1 -4317 1838 715 253 269 0 19 chr4 38032753 38032857 -164295490 + L1M4 LINE L1 2938 3039 -3107 24 0 0 0 chr4 38032915 38032939 -164295408 + AT_rich Low_complexity Low_complexity 1 24 0 28 79 0 0 chr4 38033234 38033297 -164295050 + AT_rich Low_complexity Low_complexity 1 63 0 1113 299 59 37 chr4 38033523 38034119 -164294228 + L1PA16 LINE L1 789 1397 -6177 11547 237 32 34 chr4 38034560 38036244 -164292103 + L1PA16 LINE L1 2182 3866 -3738 336 48 0 0 chr4 38036244 38036286 -164292061 + (TTCC)n Simple_repeat Simple_repeat 4 45 0 2306 95 13 0 chr4 38036287 38036592 -164291755 - AluSx SINE Alu -3 309 1 11547 237 32 34 chr4 38036592 38039171 -164289176 + L1PA16 LINE L1 3866 6445 -1159 1624 176 26 0 chr4 38039171 38039469 -164288878 + AluSx SINE Alu 3 307 0 11547 237 32 34 chr4 38039469 38040609 -164287738 + L1PA16 LINE L1 6445 7585 -19 236 250 11 0 chr4 38040638 38040726 -164287621 + L1M4 LINE L1 3877 3965 -2181 225 191 0 0 chr4 38041114 38041161 -164287186 + T-rich Low_complexity Low_complexity 2 48 0 2460 116 13 3 chr4 38041161 38041533 -164286814 - MER75 DNA T2_type -24 490 115 594 247 55 0 chr4 38041851 38041997 -164286350 - AluJb SINE Alu -30 282 129 953 209 140 51 chr4 38042508 38042843 -164285504 - MLT1A1 LTR MaLR 0 365 1 35 24 0 0 chr4 38043786 38043828 -164284519 + AT_rich Low_complexity Low_complexity 1 42 0 240 373 40 0 chr4 38043832 38043982 -164284365 - MIR SINE MIR -3 259 104 677 132 28 0 chr4 38044135 38044279 -164284068 + (TCTA)n Simple_repeat Simple_repeat 1 148 0 193 281 21 83 chr4 38044673 38044769 -164283578 + L2 LINE L2 3182 3271 -1 962 142 0 0 chr4 38044841 38044982 -164283365 + THE1B LTR MaLR 1 141 -223 272 237 82 89 chr4 38044977 38045112 -164283235 - MER41A LTR ERV1 -312 242 109 * 283 359 38 15 chr4 38046782 38046913 -164281434 - MIR3 SINE MIR -34 174 41 1595 192 53 36 chr4 38048459 38048818 -164279529 + MLT1A1 LTR MaLR 1 365 0 21 57 0 0 chr4 38051258 38051293 -164277054 + AT_rich Low_complexity Low_complexity 1 35 0 744 273 171 98 chr4 38051927 38052949 -164275398 + MER52A LTR ERV1 656 1752 -3 2025 132 7 0 chr4 38053190 38053485 -164274862 + AluSq SINE Alu 1 297 -16 559 194 0 0 chr4 38053914 38054012 -164274335 - L1M3 LINE L1 -560 5774 5677 * 3544 150 57 69 chr4 38054007 38054093 -164274254 + L1MA7 LINE L1 5401 5486 -805 5802 28 1 1 chr4 38054093 38054782 -164273565 - L1PA3 LINE L1 -3 6152 5464 3544 150 57 69 chr4 38054782 38055496 -164272851 + L1MA7 LINE L1 5486 6192 -99 1487 195 19 16 chr4 38055496 38055972 -164272375 + LTR64 LTR ERVK 1 541 -17 583 126 0 0 chr4 38055981 38056084 -164272263 + L1MA7 LINE L1 6189 6291 0 698 238 12 12 chr4 38058344 38058504 -164269843 - FRAM SINE Alu -2 164 5 30 27 0 0 chr4 38061822 38061859 -164266488 + AT_rich Low_complexity Low_complexity 1 37 0 286 280 80 40 chr4 38062524 38062649 -164265698 + HsTC2c DNA Tc2 10 139 -590 883 272 120 38 chr4 38063011 38063485 -164264862 + HsTC2c DNA Tc2 150 662 -67 230 328 49 25 chr4 38063652 38063774 -164264573 - L3 LINE CR1 -1 1576 1452 24 32 0 0 chr4 38064153 38064184 -164264163 + AT_rich Low_complexity Low_complexity 1 31 0 234 348 87 0 chr4 38064311 38064403 -164263944 + L2 LINE L2 3210 3309 -4 21 0 0 0 chr4 38064502 38064523 -164263824 + AT_rich Low_complexity Low_complexity 1 21 0 22 94 0 0 chr4 38065017 38065081 -164263266 + AT_rich Low_complexity Low_complexity 1 64 0 275 377 71 6 chr4 38065732 38065915 -164262432 - MIR SINE MIR -12 250 56 2181 92 0 7 chr4 38065917 38066220 -164262127 + AluSx SINE Alu 1 301 -11 2588 102 14 27 chr4 38066327 38066740 -164261607 - L1PA13 LINE L1 0 6163 5756 2412 84 3 0 chr4 38066741 38067064 -164261283 + L1P4 LINE L1 5399 5722 -446 476 259 73 36 chr4 38068027 38068247 -164260100 - L1ME1 LINE L1 -4 6162 5935 1184 273 70 16 chr4 38068260 38068759 -164259588 - L1ME1 LINE L1 -451 5715 5189 2552 250 82 79 chr4 38068782 38070637 -164257710 - L1ME LINE L1 -781 5299 3439 1283 208 53 101 chr4 38070737 38070944 -164257403 + LTR52 LTR ERVL 1 216 -205 3279 26 5 0 chr4 38070944 38071335 -164257012 + L1PA4 LINE L1 5763 6155 0 1283 208 53 101 chr4 38071335 38071446 -164256901 + LTR52 LTR ERVL 216 295 -126 2229 58 3 79 chr4 38071446 38071776 -164256571 - AluY SINE Alu -6 305 1 1283 208 53 101 chr4 38071776 38071893 -164256454 + LTR52 LTR ERVL 295 416 -5 604 219 77 102 chr4 38072086 38072684 -164255663 - L1ME LINE L1 -2978 3102 2520 21 89 0 0 chr4 38072850 38072906 -164255441 + AT_rich Low_complexity Low_complexity 1 56 0 211 254 30 30 chr4 38072950 38073084 -164255263 + (TA)n Simple_repeat Simple_repeat 2 135 0 432 302 34 13 chr4 38073502 38073651 -164254696 - MIR SINE MIR -29 233 82 206 32 32 0 chr4 38073880 38073911 -164254436 + (TG)n Simple_repeat Simple_repeat 2 33 0 639 311 95 28 chr4 38074578 38075184 -164253163 + L2 LINE L2 2608 3312 -1 21 0 0 0 chr4 38075654 38075675 -164252672 + AT_rich Low_complexity Low_complexity 1 21 0 613 269 52 54 chr4 38075843 38076290 -164252057 - L1ME LINE L1 -5056 1014 569 268 139 0 0 chr4 38076520 38076563 -164251784 + MLT1A1 LTR MaLR 3 45 -329 * 508 268 77 12 chr4 38076553 38076721 -164251626 + MLT1A1 LTR MaLR 180 358 -7 404 333 108 32 chr4 38076752 38077130 -164251217 - L1ME LINE L1 -5652 418 12 216 324 42 14 chr4 38077360 38077431 -164250916 - L2 LINE L2 -21 3251 3179 1773 159 3 3 chr4 38077593 38077876 -164250471 + AluSx SINE Alu 6 288 -24 493 310 122 5 chr4 38079330 38079527 -164248820 - MIR SINE MIR -25 237 18 225 154 0 0 chr4 38079542 38079581 -164248766 + (CATATA)n Simple_repeat Simple_repeat 3 41 0 26 30 0 0 chr4 38079739 38079772 -164248575 + AT_rich Low_complexity Low_complexity 1 33 0 23 0 0 0 chr4 38080210 38080233 -164248114 + AT_rich Low_complexity Low_complexity 1 23 0 43 88 0 0 chr4 38081028 38081141 -164247206 + AT_rich Low_complexity Low_complexity 1 113 0 2345 86 0 0 chr4 38081249 38081553 -164246794 + AluY SINE Alu 1 304 -7 263 295 30 54 chr4 38081675 38081841 -164246506 + L1ME3A LINE L1 6009 6170 0 1662 150 3 31 chr4 38082627 38082921 -164245426 + AluSx SINE Alu 1 286 -26 216 0 0 0 chr4 38082921 38082945 -164245402 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 337 335 135 0 chr4 38083042 38083212 -164245135 - MIR SINE MIR -33 229 37 379 235 10 0 chr4 38084030 38084128 -164244219 + MER53 DNA DNA 1 99 -90 291 93 0 0 chr4 38084719 38084762 -164243585 + (T)n Simple_repeat Simple_repeat 1 43 0 222 91 0 0 chr4 38085078 38085111 -164243236 + (TG)n Simple_repeat Simple_repeat 1 33 0 186 103 0 0 chr4 38085217 38085246 -164243101 + (T)n Simple_repeat Simple_repeat 1 29 0 2408 74 3 0 chr4 38085479 38085789 -164242558 + AluY SINE Alu 1 311 0 23 33 0 0 chr4 38085957 38085987 -164242360 + AT_rich Low_complexity Low_complexity 1 30 0 260 377 77 14 chr4 38087060 38087267 -164241080 + L2 LINE L2 2632 2851 -463 222 295 144 29 chr4 38087524 38087663 -164240684 + L2 LINE L2 3151 3305 -8 197 206 0 16 chr4 38087861 38087924 -164240423 + (TA)n Simple_repeat Simple_repeat 1 62 0 * 213 65 0 0 chr4 38087923 38087954 -164240393 + (GA)n Simple_repeat Simple_repeat 2 32 0 207 190 0 0 chr4 38088148 38088206 -164240141 + GA-rich Low_complexity Low_complexity 2 59 0 305 146 0 0 chr4 38088224 38088272 -164240075 + MLT2B1 LTR ERVL 473 520 0 2408 84 0 0 chr4 38088757 38089068 -164239279 - AluY SINE Alu 0 311 1 375 73 0 0 chr4 38089228 38089283 -164239064 + (CA)n Simple_repeat Simple_repeat 2 56 0 197 259 37 83 chr4 38089369 38089477 -164238870 - L2 LINE L2 -58 3255 3153 1341 332 143 19 chr4 38089487 38090613 -164237734 + L2 LINE L2 532 1797 -1517 312 256 0 33 chr4 38090616 38090706 -164237641 - L1MC4 LINE L1 -1339 6703 6617 370 187 0 53 chr4 38090708 38090858 -164237489 + (TA)n Simple_repeat Simple_repeat 2 143 0 1021 307 130 8 chr4 38090860 38091368 -164236979 + L2 LINE L2 1790 2359 -955 279 0 0 0 chr4 38091482 38091513 -164236834 + (TAGA)n Simple_repeat Simple_repeat 2 32 0 24 32 0 0 chr4 38092180 38092211 -164236136 + AT_rich Low_complexity Low_complexity 1 31 0 4379 187 10 1 chr4 38093101 38093969 -164234378 - L1 LINE L1 -1040 5106 4231 191 59 0 29 chr4 38094283 38094317 -164234030 + (TTTAG)n Simple_repeat Simple_repeat 3 35 0 8879 233 13 18 chr4 38094481 38097955 -164230392 - L1PA16 LINE L1 -5 6812 3358 1990 186 36 32 chr4 38097955 38098502 -164229845 - MLT2A2 LTR ERVL 0 554 1 301 250 0 0 chr4 38098510 38098574 -164229773 - L1 LINE L1 -3439 2707 2644 431 345 76 36 chr4 38099215 38099892 -164228455 - L1PA16 LINE L1 -5276 1511 134 1111 174 29 19 chr4 38099898 38100168 -164228179 + MLT2A2 LTR ERVL 271 445 -8 29 70 0 0 chr4 38100168 38100225 -164228122 + AT_rich Low_complexity Low_complexity 1 57 0 186 93 23 81 chr4 38100234 38100320 -164228027 + (TTATA)n Simple_repeat Simple_repeat 2 82 0 21 0 0 0 chr4 38100320 38100341 -164228006 + AT_rich Low_complexity Low_complexity 1 21 0 2821 96 20 8 chr4 38100347 38100741 -164227606 - MLT2A1 LTR ERVL -45 399 1 11076 204 46 57 chr4 38101186 38103355 -164224992 + L1MA4A LINE L1 2 2195 -4663 3388 37 2 0 chr4 38103355 38103763 -164224584 - L1PA3 LINE L1 -1 6154 5746 11076 204 46 57 chr4 38103763 38108080 -164220267 + L1MA4A LINE L1 2195 6377 -481 1567 173 27 13 chr4 38108080 38108380 -164219967 - AluJb SINE Alu -6 306 3 11076 204 46 57 chr4 38108380 38108851 -164219496 + L1MA4A LINE L1 6377 6852 -6 207 184 0 0 chr4 38108949 38108987 -164219360 + (CATA)n Simple_repeat Simple_repeat 4 41 0 1388 207 47 55 chr4 38109353 38109735 -164218612 - MLT1B LTR MaLR -11 379 1 21 0 0 0 chr4 38109991 38110012 -164218335 + AT_rich Low_complexity Low_complexity 1 21 0 195 310 62 18 chr4 38110323 38110436 -164217911 + MIR SINE MIR 76 193 -69 299 380 31 18 chr4 38110882 38111045 -164217302 - MIR SINE MIR -74 188 24 634 221 89 57 chr4 38111250 38111566 -164216781 + L1MCa LINE L1 2063 2388 -4038 * 1232 289 36 6 chr4 38111561 38112032 -164216315 + L1MCa LINE L1 2628 3112 -3314 1914 213 34 14 chr4 38112032 38112474 -164215873 + L1MC3 LINE L1 7071 7521 -264 598 163 0 0 chr4 38112476 38112574 -164215773 + AluJ/FLAM SINE Alu 1 98 -214 959 233 47 0 chr4 38112795 38113053 -164215294 + L1MC3 LINE L1 7508 7777 -8 1619 159 20 38 chr4 38113642 38113988 -164214359 - L1MC1 LINE L1 -1 6332 5993 726 209 81 12 chr4 38114096 38114268 -164214079 - MLT1E1 LTR MaLR 0 654 471 300 172 23 0 chr4 38114264 38114329 -164214018 - MLT1E LTR MaLR -536 57 5 * 272 392 12 12 chr4 38114363 38114529 -164213818 + MIR SINE MIR 14 179 -83 615 292 70 103 chr4 38115561 38116146 -164212201 + L2 LINE L2 2279 2844 -470 1259 144 50 67 chr4 38116242 38116540 -164211807 - L1MA5 LINE L1 0 6300 6008 228 231 19 0 chr4 38116771 38116823 -164211524 + (CA)n Simple_repeat Simple_repeat 2 54 0 221 402 103 0 chr4 38117087 38117174 -164211173 + MER91A DNA MER1_type 94 189 -7 2158 147 28 3 chr4 38117175 38117530 -164210817 - THE1B LTR MaLR 0 364 1 194 315 46 83 chr4 38118016 38118124 -164210223 + L2 LINE L2 3057 3160 -112 2443 84 0 0 chr4 38118633 38118942 -164209405 + AluY SINE Alu 1 309 -2 414 302 59 22 chr4 38121604 38121826 -164206521 + L2 LINE L2 1708 1937 -1377 737 326 67 20 chr4 38121831 38122322 -164206025 - LTR33 LTR ERVL 0 521 8 259 306 27 0 chr4 38122344 38122455 -164205892 + L2 LINE L2 1974 2087 -1227 1615 243 6 31 chr4 38122605 38122963 -164205384 - MER70B LTR ERVL -229 349 1 356 341 0 0 chr4 38123156 38123282 -164205065 - LTR33 LTR ERVL -385 136 11 193 293 208 9 chr4 38123451 38123557 -164204790 - MIR SINE MIR -57 205 79 634 272 68 34 chr4 38123621 38123827 -164204520 - MIR SINE MIR -25 237 25 1799 203 6 0 chr4 38125196 38125511 -164202836 + L1PA13 LINE L1 142 458 -6329 2044 180 38 44 chr4 38125511 38126079 -164202268 + MLT2A2 LTR ERVL 1 552 -2 1352 235 33 0 chr4 38126080 38126352 -164201995 + L1PA13 LINE L1 453 733 -6054 1957 236 102 30 chr4 38126355 38126405 -164201942 + L1PA13 LINE L1 758 803 -5984 2066 152 11 16 chr4 38126405 38126780 -164201567 + THE1C LTR MaLR 1 373 -2 1957 236 102 30 chr4 38126780 38127527 -164200820 + L1PA13 LINE L1 803 1758 -5029 578 259 149 92 chr4 38128324 38128565 -164199782 - MLT1H LTR MaLR -15 540 314 519 31 0 0 chr4 38128565 38128630 -164199717 + (TC)n Simple_repeat Simple_repeat 1 65 0 578 259 149 92 chr4 38128630 38128868 -164199479 - MLT1H LTR MaLR -241 314 38 2661 140 12 0 chr4 38129228 38129642 -164198705 - MSTA LTR MaLR -9 419 1 695 195 39 0 chr4 38129687 38129815 -164198532 + L1PA13 LINE L1 1 133 -6654 15273 210 38 19 chr4 38129915 38133713 -164194634 + L1PA13 LINE L1 1754 5648 -1149 1912 169 129 0 chr4 38133713 38134092 -164194255 - MSTA LTR MaLR 0 428 1 15273 210 38 19 chr4 38134092 38134190 -164194157 + L1PA13 LINE L1 5648 5743 -1054 701 116 78 0 chr4 38134194 38134323 -164194024 + L1PA13 LINE L1 6676 6814 0 23 0 0 0 chr4 38134487 38134510 -164193837 + AT_rich Low_complexity Low_complexity 1 23 0 1567 214 84 27 chr4 38135218 38135657 -164192690 - MLT1C LTR MaLR -2 465 2 1207 232 91 28 chr4 38136213 38136532 -164191815 + MER58B DNA MER1_type 2 340 -1 301 321 135 42 chr4 38137777 38137970 -164190377 + MIR SINE MIR 26 236 -26 294 338 113 50 chr4 38138330 38138570 -164189777 + L3 LINE CR1 1322 1576 -1 234 0 0 0 chr4 38138617 38138643 -164189704 + (CA)n Simple_repeat Simple_repeat 1 26 0 351 60 0 0 chr4 38138643 38138693 -164189654 + (GA)n Simple_repeat Simple_repeat 1 50 0 21 95 0 0 chr4 38139327 38139390 -164188957 + AT_rich Low_complexity Low_complexity 1 63 0 10724 179 85 29 chr4 38140145 38144273 -164184074 - L1MA3 LINE L1 0 7724 3347 4814 111 51 19 chr4 38144594 38145403 -164182944 - L1MA3 LINE L1 -4204 3361 2527 5003 189 26 13 chr4 38145406 38146325 -164182022 - L1MA3 LINE L1 -6619 946 16 226 299 154 17 chr4 38146712 38146829 -164181518 - L2 LINE L2 -4 3309 3177 378 17 51 0 chr4 38146861 38146920 -164181427 + (TA)n Simple_repeat Simple_repeat 1 62 0 294 403 22 0 chr4 38146961 38147095 -164181252 - L2 LINE L2 -261 3052 2916 226 352 77 25 chr4 38147232 38147428 -164180919 + MLT1L LTR MaLR 35 240 -375 1309 305 61 59 chr4 38147469 38148697 -164179650 + L1PA12 LINE L1 998 2187 -5394 4473 234 31 20 chr4 38148700 38149925 -164178422 + L1P LINE L1 3001 4239 -1907 1326 299 86 44 chr4 38149990 38151144 -164177203 - L1MEc LINE L1 -3930 2466 1265 2436 191 88 53 chr4 38151202 38151842 -164176505 + L1MB5 LINE L1 5511 6172 -2 338 290 149 8 chr4 38152073 38152321 -164176026 - L1MC4a LINE L1 -1934 5874 5592 * 4823 180 13 40 chr4 38152317 38153166 -164175181 - L1PA15 LINE L1 0 6165 5396 2157 124 0 3 chr4 38153166 38153473 -164174874 - AluY SINE Alu -3 308 3 4823 180 13 40 chr4 38153473 38154410 -164173937 - L1PA15 LINE L1 -769 5396 4435 1728 244 75 24 chr4 38154422 38154855 -164173492 + L1M4 LINE L1 2467 2955 -3191 2025 116 7 3 chr4 38154855 38155158 -164173189 - AluY SINE Alu -7 304 1 1728 244 75 24 chr4 38155158 38155470 -164172877 + L1M4 LINE L1 2955 3250 -2896 1652 267 80 35 chr4 38155477 38156285 -164172062 + L1M4 LINE L1 3268 4112 -2034 2014 118 3 0 chr4 38156679 38156983 -164171364 - AluY SINE Alu -6 305 1 349 349 64 23 chr4 38157309 38157527 -164170820 + MIR SINE MIR 34 260 -2 2367 53 0 31 chr4 38158183 38158504 -164169843 - AluY SINE Alu 0 311 1 2635 135 11 24 chr4 38159906 38160357 -164167990 - MER65A LTR ERV1 0 445 1 2093 134 0 0 chr4 38161457 38161748 -164166599 - AluSx SINE Alu -19 293 3 304 266 46 18 chr4 38162245 38162428 -164165919 - L1MC4a LINE L1 -285 5885 5698 22 0 0 0 chr4 38163105 38163127 -164165220 + AT_rich Low_complexity Low_complexity 1 22 0 24 53 0 0 chr4 38163243 38163281 -164165066 + AT_rich Low_complexity Low_complexity 1 38 0 4058 152 11 18 chr4 38164957 38165673 -164162674 + MER50 LTR ERV1 1 711 -23 1937 93 12 0 chr4 38166032 38166320 -164162027 - AluSp SINE Alu 0 312 22 218 254 0 28 chr4 38168146 38168217 -164160130 + (TATATG)n Simple_repeat Simple_repeat 2 70 0 30 0 0 0 chr4 38168518 38168548 -164159799 + AT_rich Low_complexity Low_complexity 1 30 0 345 279 0 0 chr4 38168849 38168935 -164159412 - MIR SINE MIR -73 189 104 21 57 0 0 chr4 38168953 38168988 -164159359 + AT_rich Low_complexity Low_complexity 1 35 0 25 0 0 0 chr4 38169117 38169142 -164159205 + AT_rich Low_complexity Low_complexity 1 25 0 349 302 36 14 chr4 38169291 38169430 -164158917 - L2 LINE L2 -7 3306 3165 256 132 0 0 chr4 38169433 38169471 -164158876 - MLT2C2 LTR ERVL 0 464 427 523 0 30 0 chr4 38169471 38169538 -164158809 + (TAGA)n Simple_repeat Simple_repeat 2 70 0 464 70 12 116 chr4 38169539 38169625 -164158722 + MADE1 DNA Mariner 1 77 -3 706 272 71 49 chr4 38169625 38170132 -164158215 - MLT2B1 LTR ERVL -2 518 1 210 395 117 0 chr4 38170291 38170453 -164157894 - L2 LINE L2 -408 2906 2726 5451 222 117 9 chr4 38173099 38174823 -164153524 + L1MA10 LINE L1 2982 4891 -1255 4004 174 33 62 chr4 38174824 38175788 -164152559 + L1MA10 LINE L1 5266 6201 -133 34 55 0 0 chr4 38175832 38175887 -164152460 + AT_rich Low_complexity Low_complexity 1 55 0 500 160 0 77 chr4 38176302 38176496 -164151851 + G-rich Low_complexity Low_complexity 1 179 0 286 259 169 24 chr4 38176616 38176906 -164151441 + L1M4 LINE L1 2686 3017 -3129 266 299 28 21 chr4 38177063 38177207 -164151140 + L1M4 LINE L1 2427 2571 -3575 278 235 10 0 chr4 38177268 38177370 -164150977 + GA-rich Low_complexity Low_complexity 3 105 0 752 253 13 0 chr4 38177548 38177706 -164150641 - MLT1E LTR MaLR -433 160 1 320 303 40 10 chr4 38177914 38178013 -164150334 - MIR SINE MIR -115 147 46 13058 205 31 14 chr4 38178484 38183492 -164144855 + L1MA6 LINE L1 2615 7715 -4 321 292 79 35 chr4 38184214 38184244 -164144103 - LTR65 LTR ERV1 -121 548 521 869 192 165 52 chr4 38184244 38184572 -164143775 + MLT1A1 LTR MaLR 1 365 0 321 292 79 35 chr4 38184572 38184743 -164143604 - LTR65 LTR ERV1 -148 521 338 6133 223 50 63 chr4 38185347 38185981 -164142366 + MER52A LTR ERV1 1 641 -1114 3992 87 128 26 chr4 38185981 38186605 -164141742 - LTR12 LTR ERV1 0 688 1 6133 223 50 63 chr4 38186605 38187806 -164140541 + MER52A LTR ERV1 641 1736 -19 2116 140 11 32 chr4 38187806 38188178 -164140169 - THE1B LTR MaLR 0 364 1 6133 223 50 63 chr4 38188178 38188198 -164140149 + MER52A LTR ERV1 1736 1755 0 23 0 0 0 chr4 38188345 38188368 -164139979 + AT_rich Low_complexity Low_complexity 1 23 0 270 279 29 48 chr4 38188519 38188623 -164139724 + L1ME LINE L1 4743 4844 -1302 46 54 0 0 chr4 38188635 38188709 -164139638 + AT_rich Low_complexity Low_complexity 1 74 0 311 333 68 23 chr4 38188717 38188894 -164139453 + L1ME LINE L1 4831 5015 -1131 228 289 47 0 chr4 38189188 38189316 -164139031 + L1ME LINE L1 5348 5481 -683 22 0 0 0 chr4 38191132 38191154 -164137193 + AT_rich Low_complexity Low_complexity 1 22 0 1609 169 52 21 chr4 38192536 38192618 -164135729 + AluJb SINE Alu 3 81 -231 1857 159 21 26 chr4 38192618 38192995 -164135352 - THE1C LTR MaLR 0 375 1 1609 169 52 21 chr4 38192995 38193202 -164135145 + AluJb SINE Alu 81 301 -11 366 80 0 0 chr4 38193202 38193252 -164135095 + (GA)n Simple_repeat Simple_repeat 1 50 0 341 301 80 55 chr4 38193301 38193508 -164134839 - L2 LINE L2 -4 3309 3092 1966 146 33 33 chr4 38193508 38193871 -164134476 + THE1B LTR MaLR 2 364 0 341 301 80 55 chr4 38193871 38193952 -164134395 - L2 LINE L2 -221 3092 3014 355 267 119 23 chr4 38194087 38194263 -164134084 + HAL1 LINE L1 794 986 -1521 231 286 175 13 chr4 38194938 38195092 -164133255 - MLT1L LTR MaLR -430 185 7 317 379 38 8 chr4 38197300 38197432 -164130915 + MIR SINE MIR 22 157 -105 582 152 18 0 chr4 38197938 38198050 -164130297 - AluSg/x SINE Alu -7 302 189 21 0 0 0 chr4 38199365 38199386 -164128961 + AT_rich Low_complexity Low_complexity 1 21 0 878 234 141 99 chr4 38200543 38201226 -164127121 + LTR50 LTR ERVL 2 795 0 2337 302 144 34 chr4 38203024 38204221 -164124126 + L2 LINE L2 1653 3025 -288 2193 101 7 7 chr4 38204221 38204528 -164123819 + AluSc SINE Alu 2 308 -1 2337 302 144 34 chr4 38204528 38204759 -164123588 + L2 LINE L2 3025 3229 -84 1123 88 12 0 chr4 38205371 38205531 -164122816 - L1PA7 LINE L1 -2 6152 5991 666 235 12 31 chr4 38205838 38206000 -164122347 + MER67D LTR ERV1 1 159 -502 * 1202 245 62 58 chr4 38205997 38206466 -164121881 + MLT2B1 LTR ERVL 10 480 -40 269 70 0 158 chr4 38206494 38206551 -164121796 + MLT2B1 LTR ERVL 473 520 0 1353 251 99 12 chr4 38206551 38207003 -164121344 + MER67D LTR ERV1 58 509 -5 338 243 0 0 chr4 38207091 38207165 -164121182 + MER45 DNA AcHobo 1507 1580 -1 278 348 163 26 chr4 38207631 38208197 -164120150 - L2 LINE L2 -966 2348 1706 2556 109 14 0 chr4 38209478 38209846 -164118501 - THE1C LTR MaLR 0 375 3 1981 129 0 22 chr4 38210509 38210826 -164117521 - AluSg SINE Alu 0 310 1 391 326 32 47 chr4 38211076 38211266 -164117081 + MIR3 SINE MIR 18 204 -4 345 208 0 0 chr4 38211669 38211746 -164116601 + (CATA)n Simple_repeat Simple_repeat 2 78 0 7605 26 0 0 chr4 38214165 38215156 -164113191 - L1PA3 LINE L1 -3 6152 5161 11855 36 3 0 chr4 38215156 38216599 -164111748 - L1PA3 LINE L1 -1300 4846 3400 5986 32 0 0 chr4 38216600 38217343 -164111004 + L1PA3 LINE L1 2656 3398 -2748 2210 93 0 10 chr4 38217392 38217693 -164110654 + AluY SINE Alu 1 298 -13 360 0 0 0 chr4 38217921 38217961 -164110386 + (TG)n Simple_repeat Simple_repeat 2 41 0 1316 199 55 43 chr4 38217969 38218367 -164109980 - MLT2B1 LTR ERVL -68 452 1 189 0 0 0 chr4 38218718 38218739 -164109608 + (TTTC)n Simple_repeat Simple_repeat 2 22 0 2335 93 0 3 chr4 38218746 38219056 -164109291 - AluY SINE Alu -2 309 1 330 300 12 0 chr4 38220604 38220684 -164107663 + MER5A DNA MER1_type 10 90 -99 239 313 37 37 chr4 38221219 38221353 -164106994 - MLT1L LTR MaLR -333 282 149 27 49 0 0 chr4 38223359 38223400 -164104947 + AT_rich Low_complexity Low_complexity 1 41 0 23 0 0 0 chr4 38224546 38224569 -164103778 + AT_rich Low_complexity Low_complexity 1 23 0 1327 222 5 81 chr4 38227281 38227651 -164100696 - MLT1A1 LTR MaLR 0 365 24 325 310 74 25 chr4 38228469 38228645 -164099702 - MIR SINE MIR -62 146 10 348 24 0 0 chr4 38228779 38228820 -164099527 + (CA)n Simple_repeat Simple_repeat 2 42 0 272 285 49 24 chr4 38229643 38229766 -164098581 - MLT1K LTR MaLR 0 588 463 10326 203 44 11 chr4 38230226 38233698 -164094649 - L1PA16 LINE L1 0 6166 2585 27 29 0 0 chr4 38233853 38233887 -164094460 + AT_rich Low_complexity Low_complexity 1 34 0 244 292 73 0 chr4 38233904 38234000 -164094347 - MIR SINE MIR -115 147 45 1367 296 118 35 chr4 38234532 38235271 -164093076 + L2 LINE L2 1630 2429 -885 306 315 27 9 chr4 38235321 38235432 -164092915 + L2 LINE L2 2945 3057 -256 329 235 30 121 chr4 38235464 38235530 -164092817 + L2 LINE L2 3159 3229 -84 2494 59 7 0 chr4 38235530 38235834 -164092513 - AluY SINE Alu -3 308 3 329 235 30 121 chr4 38235834 38235933 -164092414 + L2 LINE L2 3229 3309 -4 1508 158 4 8 chr4 38236446 38236692 -164091655 + AluSx SINE Alu 1 245 -67 875 245 20 10 chr4 38236871 38237071 -164091276 - MLT1A2 LTR MaLR 0 374 173 252 154 0 0 chr4 38237071 38237123 -164091224 + GA-rich Low_complexity Low_complexity 2 53 0 525 266 59 41 chr4 38237133 38237302 -164091045 - MLT1A2 LTR MaLR -218 172 1 1259 208 133 11 chr4 38237432 38237889 -164090458 + MER114 LTR ERV 65 577 -71 1333 161 0 18 chr4 38239108 38239326 -164089021 + AluSx SINE Alu 1 214 -98 250 283 239 9 chr4 38240014 38240127 -164088220 + MLT1K LTR MaLR 146 284 -304 2362 66 10 0 chr4 38242011 38242313 -164086034 + AluY SINE Alu 1 305 -6 22 99 0 0 chr4 38242462 38242533 -164085814 + AT_rich Low_complexity Low_complexity 1 71 0 946 184 69 175 chr4 38242605 38243056 -164085291 - MER67D LTR ERV1 0 514 112 1479 218 156 7 chr4 38243056 38243460 -164084887 + MSTB1-int LTR MaLR 437 900 -751 453 162 0 0 chr4 38243465 38243533 -164084814 - LTR12 LTR ERV1 -30 684 617 355 235 59 0 chr4 38243533 38243635 -164084712 - LTR30 LTR ERV1 -70 652 545 1392 145 8 8 chr4 38243742 38243976 -164084371 - LTR12 LTR ERV1 -480 234 1 3135 118 2 0 chr4 38243976 38244424 -164083923 - HERV9 LTR ERV1 0 8399 7951 * 25318 110 27 20 chr4 38244393 38249055 -164079292 - HERV9 LTR ERV1 -3544 4855 80 660 156 22 28 chr4 38249055 38249202 -164079145 - LTR12 LTR ERV1 0 714 301 248 258 32 21 chr4 38249202 38249295 -164079052 - LTR30 LTR ERV1 -79 643 550 369 197 22 112 chr4 38249295 38249473 -164078874 - LTR12 LTR ERV1 -430 284 123 264 231 0 0 chr4 38249477 38249529 -164078818 - LTR30 LTR ERV1 -670 52 1 3587 200 45 25 chr4 38249531 38249833 -164078514 + MSTB1-int LTR MaLR 880 1175 -476 1682 154 6 60 chr4 38249833 38250164 -164078183 + AluSq SINE Alu 1 313 0 3587 200 45 25 chr4 38250164 38250615 -164077732 + MSTB1-int LTR MaLR 1175 1648 -3 2351 171 26 14 chr4 38250623 38251050 -164077297 + MSTB1 LTR MaLR 1 432 0 183 283 50 33 chr4 38251258 38251318 -164077029 - MIR SINE MIR -119 89 29 472 267 99 91 chr4 38251432 38251806 -164076541 - Charlie8 DNA MER1_type -2198 219 1 348 24 0 0 chr4 38252286 38252327 -164076020 + (CA)n Simple_repeat Simple_repeat 2 42 0 264 30 0 0 chr4 38253623 38253656 -164074691 + (CA)n Simple_repeat Simple_repeat 2 34 0 238 313 0 0 chr4 38254222 38254289 -164074058 + GA-rich Low_complexity Low_complexity 4 70 0 25 0 0 0 chr4 38255266 38255291 -164073056 + AT_rich Low_complexity Low_complexity 1 25 0 553 345 60 4 chr4 38255625 38255857 -164072490 + MIR SINE MIR 8 252 -10 937 179 79 5 chr4 38256108 38256396 -164071951 + MLT1C LTR MaLR 5 353 -114 366 206 174 0 chr4 38256665 38256757 -164071590 + MLT1C LTR MaLR 348 455 -12 477 301 46 18 chr4 38256892 38257102 -164071245 - LTR33 LTR ERVL 0 521 300 352 272 22 22 chr4 38257210 38257346 -164071001 - LTR33 LTR ERVL -374 147 12 32 0 0 0 chr4 38257419 38257451 -164070896 + AT_rich Low_complexity Low_complexity 1 32 0 1513 189 7 11 chr4 38257647 38257922 -164070425 - AluJo SINE Alu -20 292 19 272 207 117 72 chr4 38257990 38258101 -164070246 - MLT1L LTR MaLR -374 241 126 216 227 187 0 chr4 38258329 38258404 -164069943 + MIR SINE MIR 58 146 -62 292 268 41 73 chr4 38258595 38258718 -164069629 + MIR3 SINE MIR 41 159 -49 1556 116 72 108 chr4 38260285 38260674 -164067673 + THE1C LTR MaLR 1 375 0 1831 188 23 67 chr4 38262222 38262270 -164066077 - MLT2D LTR ERVL 0 414 365 279 0 0 0 chr4 38262270 38262301 -164066046 + (CA)n Simple_repeat Simple_repeat 2 32 0 1831 188 23 67 chr4 38262301 38262683 -164065664 - MLT2D LTR ERVL -49 365 3 1135 281 84 57 chr4 38262693 38263206 -164065141 - MER77 LTR ERV1 -13 592 66 195 273 45 15 chr4 38264982 38265048 -164063299 - MIR SINE MIR -107 155 88 193 188 0 175 chr4 38267144 38267224 -164061123 + MIR SINE MIR 122 187 -75 267 304 65 22 chr4 38268091 38268229 -164060118 + L2 LINE L2 2289 2432 -882 354 323 38 111 chr4 38268266 38268607 -164059740 - L2 LINE L2 -19 3253 2938 193 375 88 22 chr4 38269643 38269779 -164058568 - MIR3 SINE MIR -42 166 22 2746 134 7 2 chr4 38269827 38270251 -164058096 + MSTA LTR MaLR 3 428 0 325 307 106 17 chr4 38270295 38270474 -164057873 + L2 LINE L2 854 1048 -2266 286 265 78 10 chr4 38270559 38270661 -164057686 + MLT1J LTR MaLR 89 197 -314 2624 295 101 58 chr4 38270876 38273025 -164055322 + L2 LINE L2 1058 3309 -4 391 271 20 94 chr4 38274971 38275174 -164053173 - MLT1J2 LTR MaLR 0 450 263 2117 123 0 13 chr4 38275725 38276041 -164052306 - AluSx SINE Alu 0 312 1 204 97 0 0 chr4 38276121 38276152 -164052195 + (CA)n Simple_repeat Simple_repeat 2 32 0 471 18 0 0 chr4 38277687 38277743 -164050604 + (TA)n Simple_repeat Simple_repeat 1 56 0 606 293 40 13 chr4 38277848 38278073 -164050274 - L1ME LINE L1 -330 5791 5561 13998 154 20 8 chr4 38278734 38282154 -164046193 + L1PA12 LINE L1 2658 6113 -55 280 347 17 19 chr4 38282843 38282983 -164045364 - MER5B DNA MER1_type -36 142 16 30 45 0 0 chr4 38283065 38283109 -164045238 + AT_rich Low_complexity Low_complexity 1 44 0 316 300 58 52 chr4 38283244 38283548 -164044799 - HAL1b LINE L1 -677 1674 365 280 252 28 28 chr4 38283557 38283664 -164044683 - HAL1 LINE L1 -1125 1382 1276 432 256 0 0 chr4 38283793 38283883 -164044464 + MER21B LTR ERV1 1 90 -773 1918 258 33 36 chr4 38283907 38284485 -164043862 + MER21B LTR ERV1 20 595 -268 1096 256 98 17 chr4 38284505 38284911 -164043436 + LTR47B LTR ERVL 5 443 0 306 272 0 66 chr4 38284958 38285094 -164043253 + LTR47B-int LTR ERVL 43 169 -5174 582 307 43 46 chr4 38286499 38286848 -164041499 + LTR57-int LTR ERVL 1718 2065 -3278 426 315 36 75 chr4 38286864 38287488 -164040859 + LTR57-int LTR ERVL 2313 2820 -2523 433 328 19 14 chr4 38287769 38288065 -164040282 + LTR57-int LTR ERVL 3130 3408 -1935 1390 217 57 41 chr4 38289195 38289614 -164038733 + LTR47B LTR ERVL 18 443 0 749 232 57 10 chr4 38289630 38289824 -164038523 + MER21B LTR ERV1 613 815 -48 243 0 0 0 chr4 38290043 38290070 -164038277 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2018 132 3 10 chr4 38290072 38290376 -164037971 - AluSx SINE Alu -10 302 1 27 49 0 0 chr4 38290963 38291004 -164037343 + AT_rich Low_complexity Low_complexity 1 41 0 914 257 99 7 chr4 38291147 38291187 -164037160 - MLT2D LTR ERVL 0 414 379 183 42 0 0 chr4 38291187 38291211 -164037136 + (TG)n Simple_repeat Simple_repeat 2 25 0 914 257 99 7 chr4 38291211 38291368 -164036979 - MLT2D LTR ERVL -35 379 238 201 39 0 0 chr4 38291368 38291394 -164036953 + (TTG)n Simple_repeat Simple_repeat 2 27 0 914 257 99 7 chr4 38291394 38291498 -164036849 - MLT2D LTR ERVL -176 238 84 279 302 108 41 chr4 38291556 38291722 -164036625 + MIR SINE MIR 34 219 -43 2004 133 109 15 chr4 38291976 38292306 -164036041 + THE1B LTR MaLR 1 361 -3 10735 117 14 3 chr4 38292309 38293871 -164034476 + THE1B-int LTR MaLR 1 1580 0 2134 132 73 15 chr4 38293871 38294212 -164034135 + THE1B LTR MaLR 1 361 -3 580 264 67 36 chr4 38294214 38294407 -164033940 + MIR SINE MIR 52 250 -12 21 0 0 0 chr4 38295708 38295729 -164032618 + AT_rich Low_complexity Low_complexity 1 21 0 1326 220 95 35 chr4 38296685 38297116 -164031231 + MSTB2 LTR MaLR 1 457 0 193 274 68 82 chr4 38298951 38299097 -164029250 + MIR SINE MIR 73 216 -46 668 251 112 60 chr4 38300148 38300399 -164027948 - MLT1H1 LTR MaLR 0 555 292 297 203 16 0 chr4 38300585 38300649 -164027698 + AluJ/FLAM SINE Alu 1 65 -237 239 206 44 15 chr4 38300772 38300840 -164027507 - MLT1H1 LTR MaLR -484 71 2 28 71 0 0 chr4 38301864 38301920 -164026427 + AT_rich Low_complexity Low_complexity 1 56 0 256 305 54 84 chr4 38302148 38302387 -164025960 + L2 LINE L2 2958 3189 -124 376 278 32 29 chr4 38302570 38302766 -164025581 + L1MC4 LINE L1 6730 6934 -889 1530 269 45 31 chr4 38302792 38303343 -164025004 + L1MCb LINE L1 1 559 -5486 2741 221 83 15 chr4 38303449 38304671 -164023676 + L1MCb LINE L1 568 1967 -4597 589 281 25 21 chr4 38304759 38305001 -164023346 + L1MC5 LINE L1 6974 7216 -745 310 291 51 23 chr4 38305160 38305335 -164023012 + L1MC5 LINE L1 7306 7485 -476 232 274 71 71 chr4 38305338 38305718 -164022629 + L1MC5 LINE L1 7538 7917 -44 24 77 0 0 chr4 38306195 38306247 -164022100 + AT_rich Low_complexity Low_complexity 1 52 0 212 100 25 0 chr4 38306613 38306653 -164021694 + (TA)n Simple_repeat Simple_repeat 1 41 0 2664 51 0 0 chr4 38307634 38307945 -164020402 - AluY SINE Alu 0 311 1 297 0 0 0 chr4 38308093 38308126 -164020221 + (TG)n Simple_repeat Simple_repeat 2 34 0 327 285 58 7 chr4 38308273 38308410 -164019937 - L1MEd LINE L1 -5908 211 68 2507 202 63 16 chr4 38308588 38309260 -164019087 - Tigger7 DNA MER2_type -1 2586 3 288 87 0 0 chr4 38309896 38309942 -164018405 + L1PA6 LINE L1 6109 6154 0 316 340 16 58 chr4 38312235 38312426 -164015921 - MER5A DNA MER1_type -6 183 1 191 205 128 0 chr4 38312460 38312499 -164015848 - L2 LINE L2 -19 3253 3210 1565 189 89 50 chr4 38312550 38312990 -164015357 + MLT1C LTR MaLR 11 467 0 359 377 40 11 chr4 38313146 38313321 -164015026 + MER5A DNA MER1_type 10 189 0 833 342 112 32 chr4 38314807 38315521 -164012826 + L2 LINE L2 1924 2694 -620 578 124 62 0 chr4 38315694 38315807 -164012540 - L1MA7 LINE L1 0 6291 6172 662 355 74 19 chr4 38315866 38316328 -164012019 + L2 LINE L2 2823 3309 -4 525 320 30 20 chr4 38317227 38317430 -164010917 - MIR SINE MIR -4 258 54 201 309 109 27 chr4 38317461 38317571 -164010776 + L3 LINE CR1 938 1056 -521 271 308 13 0 chr4 38317578 38317656 -164010691 - L2 LINE L2 0 3272 3194 419 350 38 66 chr4 38317732 38318187 -164010160 + L3 LINE CR1 1054 1551 -26 995 256 79 30 chr4 38318268 38318662 -164009685 - LTR40c LTR ERVL -52 413 1 247 231 0 0 chr4 38320049 38320101 -164008246 - MER116 DNA Mariner -26 54 3 313 339 42 18 chr4 38320144 38320312 -164008035 + MIR SINE MIR 91 262 0 551 327 143 0 chr4 38320903 38321120 -164007227 + MIR SINE MIR 15 262 0 291 355 138 11 chr4 38321492 38321681 -164006666 - MIR SINE MIR -19 243 31 2743 42 0 0 chr4 38322109 38322439 -164005908 - L1PA4 LINE L1 -3 6152 5823 212 367 62 23 chr4 38322439 38322567 -164005780 + MIR SINE MIR 119 251 -11 396 265 193 31 chr4 38322567 38322790 -164005557 - MER112 DNA MER1_type -1 259 1 191 267 35 81 chr4 38323819 38323905 -164004442 - MIR SINE MIR -71 191 110 1813 201 60 29 chr4 38325524 38325976 -164002371 + MLT1C LTR MaLR 2 467 0 271 244 74 104 chr4 38326860 38326995 -164001352 - MIR3 SINE MIR -36 172 42 298 301 32 0 chr4 38328137 38328230 -164000117 + (TTAGGG)n Simple_repeat Simple_repeat 1 96 0 1378 85 6 0 chr4 38328675 38328852 -163999495 + AluY SINE Alu 9 186 -125 806 272 101 13 chr4 38328852 38329150 -163999197 + L1MC4 LINE L1 7563 7886 -156 397 313 101 61 chr4 38330779 38330834 -163997513 + L3 LINE CR1 1214 1265 -312 2384 64 0 0 chr4 38330834 38331131 -163997216 + AluY SINE Alu 1 297 -14 397 313 101 61 chr4 38331131 38331269 -163997078 + L3 LINE CR1 1265 1396 -181 1805 145 25 0 chr4 38331269 38331552 -163996795 + AluSx SINE Alu 1 290 -22 397 313 101 61 chr4 38331552 38331702 -163996645 + L3 LINE CR1 1396 1572 -5 23 0 0 0 chr4 38332056 38332079 -163996268 + AT_rich Low_complexity Low_complexity 1 23 0 249 33 0 0 chr4 38332405 38332435 -163995912 + (GA)n Simple_repeat Simple_repeat 2 31 0 28 86 0 0 chr4 38333266 38333336 -163995011 + AT_rich Low_complexity Low_complexity 1 70 0 313 304 74 70 chr4 38333605 38333848 -163994499 + MIR SINE MIR 17 260 -2 2223 109 18 3 chr4 38334846 38335177 -163993170 - THE1C-int LTR MaLR -1244 336 1 1488 181 54 43 chr4 38335177 38335548 -163992799 - THE1C LTR MaLR 0 375 1 2531 251 67 106 chr4 38335883 38337500 -163990847 + L1MC3 LINE L1 1 1194 -4851 4892 158 10 5 chr4 38337538 38337712 -163990635 - L1PA15 LINE L1 -8 6808 6636 2265 114 0 0 chr4 38337712 38338020 -163990327 + AluY SINE Alu 1 308 -3 4892 158 10 5 chr4 38338020 38339589 -163988758 - L1PA15 LINE L1 -180 6636 5058 5299 234 41 41 chr4 38339590 38340670 -163987677 - L1PA15 LINE L1 -3015 3782 2703 2012 114 0 14 chr4 38340670 38340960 -163987387 - AluSc SINE Alu -22 287 2 5299 234 41 41 chr4 38340960 38342414 -163985933 - L1PA15 LINE L1 -4094 2703 1245 337 68 0 0 chr4 38342503 38342547 -163985800 + THE1B LTR MaLR 1 44 -320 1846 59 4 0 chr4 38342557 38342794 -163985553 + THE1B-int LTR MaLR 1343 1580 0 1844 148 60 23 chr4 38342794 38343145 -163985202 + THE1B LTR MaLR 1 364 0 335 268 49 106 chr4 38343175 38343317 -163985030 - L1PA15 LINE L1 -6135 652 519 785 115 0 0 chr4 38343318 38343431 -163984916 + THE1C LTR MaLR 262 374 -1 962 269 50 12 chr4 38343454 38343878 -163984469 + L1MC3 LINE L1 3458 3897 -2667 4214 167 63 11 chr4 38343894 38344227 -163984120 - L1MC1 LINE L1 -111 6222 5908 7856 138 11 11 chr4 38344227 38345527 -163982820 + HSMAR2 DNA Mariner 1 1300 -2 4214 167 63 11 chr4 38345527 38345991 -163982356 - L1MC1 LINE L1 -425 5908 5384 3607 195 37 16 chr4 38346040 38346911 -163981436 + L1MC3 LINE L1 5559 5819 -745 5149 201 56 66 chr4 38346911 38347145 -163981202 + L1MC3 LINE L1 6753 6988 -1215 283 109 0 0 chr4 38347145 38347191 -163981156 + MADE1 DNA Mariner 34 79 -1 5149 201 56 66 chr4 38347191 38348371 -163979976 + L1MC3 LINE L1 6988 8197 -6 411 98 0 0 chr4 38348401 38348462 -163979885 + (TG)n Simple_repeat Simple_repeat 2 62 0 213 108 0 0 chr4 38348910 38348947 -163979400 + (CA)n Simple_repeat Simple_repeat 1 37 0 199 383 133 6 chr4 38348948 38349128 -163979219 + L2 LINE L2 2954 3156 -116 279 54 0 0 chr4 38349617 38349654 -163978693 + (TTA)n Simple_repeat Simple_repeat 3 39 0 191 309 179 8 chr4 38350391 38350514 -163977833 - L2 LINE L2 -17 3255 3112 941 205 61 72 chr4 38350726 38351101 -163977246 + LTR37A LTR ERV1 56 426 0 2199 116 0 0 chr4 38351750 38352044 -163976303 + AluSx SINE Alu 2 295 -17 2124 112 0 0 chr4 38352665 38352952 -163975395 + AluSc SINE Alu 3 289 -20 360 0 0 0 chr4 38353057 38353097 -163975250 + (CA)n Simple_repeat Simple_repeat 2 41 0 2058 125 0 3 chr4 38354250 38354554 -163973793 - AluSx SINE Alu -9 303 1 384 94 0 0 chr4 38354646 38354699 -163973648 - Alu SINE Alu -249 53 1 267 31 0 0 chr4 38354732 38354764 -163973583 + (CA)n Simple_repeat Simple_repeat 2 33 0 281 333 51 51 chr4 38354943 38355159 -163973188 - MLT1K LTR MaLR 0 588 373 241 246 35 0 chr4 38355290 38355347 -163973000 - MLT1K LTR MaLR -383 205 147 221 245 0 0 chr4 38355589 38355638 -163972709 + (TAGA)n Simple_repeat Simple_repeat 4 52 0 307 220 71 99 chr4 38355687 38355828 -163972519 + L1ME4a LINE L1 5983 6119 -2 361 318 9 0 chr4 38356022 38356132 -163972215 - MIR3 SINE MIR -3 205 95 207 0 0 0 chr4 38356144 38356167 -163972180 + (CAAAAA)n Simple_repeat Simple_repeat 4 26 0 710 131 29 29 chr4 38357729 38357904 -163970443 + GA-rich Low_complexity Low_complexity 2 176 0 297 178 30 50 chr4 38357937 38358038 -163970309 + GA-rich Low_complexity Low_complexity 2 100 0 328 239 114 80 chr4 38358378 38358554 -163969793 + MIR SINE MIR 81 262 0 927 293 87 14 chr4 38358615 38359028 -163969319 - LTR16C LTR ERVL -11 480 38 424 307 68 6 chr4 38359417 38359580 -163968767 + MIR SINE MIR 78 250 -12 197 261 77 54 chr4 38359704 38359834 -163968513 + MIR SINE MIR 21 153 -109 2161 182 11 0 chr4 38360456 38360814 -163967533 - MLT1A1 LTR MaLR -3 362 1 2502 116 16 8 chr4 38361148 38361520 -163966827 + THE1C LTR MaLR 1 375 0 1417 271 58 27 chr4 38361636 38362120 -163966227 + LTR53 LTR ERVL 21 519 0 978 211 81 29 chr4 38362959 38363267 -163965080 - MER33 DNA MER1_type 0 324 1 419 350 6 19 chr4 38363277 38363437 -163964910 + MIR SINE MIR 41 198 -64 1964 131 0 0 chr4 38363487 38363823 -163964524 + AluSx SINE Alu 1 336 0 211 182 0 0 chr4 38363909 38363942 -163964405 + polypyrimidine Low_complexity Low_complexity 2 34 0 404 265 44 0 chr4 38364185 38364321 -163964026 + MIR SINE MIR 82 223 -39 192 338 66 60 chr4 38364579 38364730 -163963617 - MIR3 SINE MIR -3 205 54 27 0 0 0 chr4 38365382 38365409 -163962938 + AT_rich Low_complexity Low_complexity 1 27 0 1157 278 86 14 chr4 38365983 38366685 -163961662 + L1MDa LINE L1 1045 1862 -4520 4069 240 22 19 chr4 38367343 38368902 -163959445 + L1PA15 LINE L1 1532 3124 -3673 3795 124 24 14 chr4 38368901 38369570 -163958777 + L1MA2 LINE L1 2358 3033 -4532 * 4893 113 55 22 chr4 38369558 38369625 -163958722 + L1MA2 LINE L1 6740 6803 -920 1794 199 0 0 chr4 38369625 38369936 -163958411 + AluJb SINE Alu 2 312 0 4893 113 55 22 chr4 38369936 38370720 -163957627 + L1MA2 LINE L1 6803 7619 -104 11183 215 30 6 chr4 38370731 38371487 -163956860 + L1PA15 LINE L1 3115 3851 -2965 297 0 0 0 chr4 38371487 38371520 -163956827 + (GA)n Simple_repeat Simple_repeat 2 34 0 11183 215 30 6 chr4 38371520 38374371 -163953976 + L1PA15 LINE L1 3851 6806 -10 25 31 0 0 chr4 38374573 38374605 -163953742 + AT_rich Low_complexity Low_complexity 1 32 0 5638 214 59 44 chr4 38374681 38375256 -163953091 + L1MB7 LINE L1 1897 2462 -3791 1828 127 7 27 chr4 38375256 38375556 -163952791 - AluSx SINE Alu -18 294 1 5638 214 59 44 chr4 38375556 38378968 -163949379 + L1MB7 LINE L1 2462 6125 -128 1715 36 27 32 chr4 38378972 38379192 -163949155 - AluY SINE Alu -15 296 78 582 53 0 0 chr4 38379192 38379267 -163949080 + Alu SINE Alu 2 76 -234 244 91 0 45 chr4 38379290 38379334 -163949013 + L1MB7 LINE L1 6195 6236 -17 2242 97 0 7 chr4 38379572 38379881 -163948466 - AluSq SINE Alu -6 307 1 22 0 0 0 chr4 38380075 38380097 -163948250 + AT_rich Low_complexity Low_complexity 1 22 0 1809 133 11 0 chr4 38381070 38381334 -163947013 + AluSx SINE Alu 36 302 -10 1886 157 0 26 chr4 38381613 38381925 -163946422 - AluSx SINE Alu -3 309 6 254 299 0 0 chr4 38384245 38384312 -163944035 + GA-rich Low_complexity Low_complexity 4 70 0 339 327 46 18 chr4 38385774 38385983 -163942364 - LTR33 LTR ERVL -1 520 300 500 237 22 15 chr4 38386091 38386226 -163942121 - LTR33 LTR ERVL -374 147 12 32 0 0 0 chr4 38386299 38386331 -163942016 + AT_rich Low_complexity Low_complexity 1 32 0 1490 189 7 11 chr4 38386527 38386802 -163941545 - AluJo SINE Alu -20 292 19 1903 168 85 15 chr4 38387125 38387525 -163940822 - MSTA LTR MaLR 0 428 1 271 216 39 0 chr4 38387647 38387698 -163940649 + L2 LINE L2 3211 3263 -9 747 184 73 17 chr4 38387770 38387949 -163940398 + MER5A DNA MER1_type 1 189 0 4465 199 49 3 chr4 38389644 38390505 -163937842 + MER54A LTR ERVL 1 900 -1 2822 13 0 0 chr4 38390812 38391125 -163937222 - AluYb8 SINE Alu -5 313 1 497 302 134 47 chr4 38391245 38391802 -163936545 - L2 LINE L2 -2 3311 2710 1979 117 33 3 chr4 38391910 38392210 -163936137 + AluSx SINE Alu 2 310 -2 184 240 40 0 chr4 38392592 38392642 -163935705 - L2 LINE L2 0 3313 3262 21 0 0 0 chr4 38392834 38392855 -163935492 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr4 38394042 38394072 -163934275 + AT_rich Low_complexity Low_complexity 1 30 0 326 349 96 0 chr4 38395065 38395211 -163933136 - MIR SINE MIR -92 170 11 30 45 0 0 chr4 38395322 38395366 -163932981 + AT_rich Low_complexity Low_complexity 1 44 0 24 85 0 0 chr4 38395510 38395569 -163932778 + AT_rich Low_complexity Low_complexity 1 59 0 835 224 0 0 chr4 38395581 38395742 -163932605 + FRAM SINE Alu 2 162 -14 823 228 70 109 chr4 38395851 38396337 -163932010 + MLT1C LTR MaLR 1 467 0 314 227 13 0 chr4 38396451 38396526 -163931821 - AluJ/FRAM SINE Alu 0 302 227 4526 200 37 8 chr4 38396528 38398345 -163930002 + L1PA16 LINE L1 4297 6165 -1 213 224 55 24 chr4 38398812 38398977 -163929370 + (TA)n Simple_repeat Simple_repeat 1 170 0 276 335 143 12 chr4 38401494 38401810 -163926537 - L2 LINE L2 -1468 1846 1429 1532 168 29 7 chr4 38402134 38402408 -163925939 + AluJb SINE Alu 1 280 -32 1337 19 0 6 chr4 38402408 38402569 -163925778 + (GAAA)n Simple_repeat Simple_repeat 1 160 0 268 295 120 21 chr4 38402582 38402816 -163925531 + L1ME3A LINE L1 4093 4349 -1797 743 227 40 45 chr4 38402860 38403058 -163925289 + MLT1A2 LTR MaLR 1 197 -177 268 295 76 9 chr4 38403240 38403345 -163925002 + MLT1L LTR MaLR 465 576 -39 1019 285 61 37 chr4 38403513 38403983 -163924364 - MLT1H LTR MaLR -16 533 11 272 348 70 32 chr4 38403991 38404422 -163923925 + L1ME3A LINE L1 5493 5939 -231 902 301 79 43 chr4 38405442 38406023 -163922324 - L2 LINE L2 0 3313 2717 742 331 71 10 chr4 38406816 38407127 -163921220 + MLT1J LTR MaLR 9 338 -173 216 398 29 10 chr4 38407545 38407648 -163920699 - L2 LINE L2 -47 3225 3121 302 376 101 16 chr4 38407916 38408044 -163920303 - L2 LINE L2 -444 2870 2754 2151 177 44 118 chr4 38408044 38408316 -163920031 - MER44D DNA MER2_type -1883 604 313 1883 140 0 0 chr4 38408316 38408587 -163919760 + AluSq SINE Alu 5 275 -38 2151 177 44 118 chr4 38408587 38408907 -163919440 - MER44D DNA MER2_type -2174 313 1 302 376 101 16 chr4 38408907 38409283 -163919064 - L2 LINE L2 -560 2754 2323 2068 194 41 2 chr4 38409495 38409907 -163918440 + MSTA LTR MaLR 1 428 0 1774 198 24 0 chr4 38410028 38410362 -163917985 - MER7A DNA MER2_type -5 341 2 214 360 166 32 chr4 38410465 38410904 -163917443 - L2 LINE L2 -2505 809 312 409 35 17 0 chr4 38412088 38412146 -163916201 - L1PA3 LINE L1 -250 5905 5847 26 50 0 0 chr4 38412816 38412856 -163915491 + AT_rich Low_complexity Low_complexity 1 40 0 23 54 0 0 chr4 38412975 38413012 -163915335 + AT_rich Low_complexity Low_complexity 1 37 0 183 213 21 21 chr4 38414625 38414672 -163913675 + L2 LINE L2 3264 3310 -3 788 254 75 26 chr4 38415312 38415540 -163912807 - MIR SINE MIR -16 246 8 282 329 62 19 chr4 38415570 38415731 -163912616 + L2 LINE L2 2921 3088 -184 311 261 0 0 chr4 38415899 38415964 -163912383 - MIR SINE MIR -143 119 55 425 274 60 0 chr4 38416002 38416119 -163912228 - MER45A DNA AcHobo -53 125 2 304 301 8 32 chr4 38416216 38416339 -163912008 - L1M4 LINE L1 -2310 3836 3717 581 315 65 65 chr4 38416364 38417062 -163911285 - L1M4 LINE L1 -2486 3660 2963 311 333 55 71 chr4 38417101 38417651 -163910696 - L1M4 LINE L1 -3329 2817 2277 621 293 26 8 chr4 38418232 38418498 -163909849 - HAL1b LINE L1 -703 645 375 180 0 0 0 chr4 38418981 38419001 -163909346 + (T)n Simple_repeat Simple_repeat 1 20 0 2213 99 3 0 chr4 38419033 38419325 -163909022 + AluSc SINE Alu 1 293 -16 2399 86 0 0 chr4 38419850 38420152 -163908195 - AluSx SINE Alu -10 302 1 804 222 144 4 chr4 38420191 38420559 -163907788 - MER31B LTR ERV1 0 466 1 21 36 0 0 chr4 38420777 38420805 -163907542 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chr4 38420840 38420860 -163907487 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 8478 202 41 4 chr4 38420860 38423534 -163904813 - L1PA13 LINE L1 -9 6154 3382 435 302 79 0 chr4 38423536 38423725 -163904622 - L1ME3A LINE L1 -339 5831 5628 436 222 10 0 chr4 38423731 38423830 -163904517 - L1ME3A LINE L1 -586 5576 5477 506 274 86 94 chr4 38423845 38424611 -163903736 - L1ME3A LINE L1 -998 5148 4389 709 338 42 50 chr4 38424894 38425294 -163903053 - L3 LINE CR1 -61 1516 1120 3436 194 29 14 chr4 38428547 38429305 -163899042 - L1P LINE L1 -1515 4631 3863 6051 101 13 2 chr4 38429316 38430372 -163897975 + L1PA14 LINE L1 5099 6160 -1 2223 128 0 0 chr4 38431019 38431323 -163897024 - AluSx SINE Alu -5 307 4 513 254 48 79 chr4 38431779 38431968 -163896379 + FAM SINE Alu 1 47 -2 531 158 24 16 chr4 38431968 38432095 -163896252 + GA-rich Low_complexity Low_complexity 3 130 0 210 156 0 0 chr4 38432096 38432128 -163896219 + polypurine Low_complexity Low_complexity 1 32 0 232 371 8 23 chr4 38432128 38432260 -163896087 - L2 LINE L2 -1051 2263 2134 525 275 103 44 chr4 38432296 38432616 -163895731 - L2 LINE L2 -1277 2037 1699 5081 170 28 23 chr4 38432666 38434012 -163894335 + L1MA7 LINE L1 4915 6270 -21 22 0 0 0 chr4 38434022 38434044 -163894303 + AT_rich Low_complexity Low_complexity 1 22 0 272 353 37 15 chr4 38434119 38434255 -163894092 - MIR SINE MIR -123 139 1 1491 186 17 34 chr4 38434382 38434673 -163893674 - AluJo SINE Alu -26 286 1 305 314 59 8 chr4 38435976 38436094 -163892253 - MIR SINE MIR -105 157 34 983 187 7 100 chr4 38436351 38436421 -163891926 - L1 LINE L1 -1290 4856 4781 3915 135 54 26 chr4 38436421 38437140 -163891207 - L1PA16 LINE L1 -9 6157 5419 983 187 7 100 chr4 38437140 38437358 -163890989 - L1 LINE L1 -1365 4781 4595 799 271 151 11 chr4 38438636 38438986 -163889361 - Charlie7 DNA MER1_type -1215 1397 999 401 272 99 30 chr4 38439186 38439388 -163888959 - Charlie7 DNA MER1_type -1864 748 533 1866 100 85 0 chr4 38439404 38439674 -163888673 + AluSg SINE Alu 1 293 -17 186 43 0 0 chr4 38439680 38439703 -163888644 + (TAA)n Simple_repeat Simple_repeat 2 24 0 651 286 128 65 chr4 38439762 38440175 -163888172 - Charlie7 DNA MER1_type -2115 497 59 1779 77 0 20 chr4 38440869 38441116 -163887231 + AluY SINE Alu 1 242 -69 1527 112 5 0 chr4 38441284 38441489 -163886858 - AluSg1 SINE Alu -103 206 1 502 263 11 26 chr4 38441518 38441708 -163886639 - L1ME2 LINE L1 -19 6145 5959 2287 117 0 0 chr4 38443740 38444049 -163884298 - AluSx SINE Alu -3 309 1 462 253 98 9 chr4 38444597 38444955 -163883392 - L1ME LINE L1 -3756 2324 1970 278 291 101 42 chr4 38445289 38446047 -163882300 - L1ME LINE L1 -4607 1473 677 192 97 0 0 chr4 38446763 38446794 -163881553 + (TTTTTG)n Simple_repeat Simple_repeat 4 34 0 824 276 116 42 chr4 38446856 38447288 -163881059 - L2 LINE L2 0 3313 2850 28 0 0 0 chr4 38447333 38447361 -163880986 + AT_rich Low_complexity Low_complexity 1 28 0 255 281 149 25 chr4 38447430 38447551 -163880796 - L2 LINE L2 -584 2730 2595 401 267 105 0 chr4 38447556 38447661 -163880686 + MIR SINE MIR 9 124 -138 1072 274 82 22 chr4 38447669 38448229 -163880118 - L2 LINE L2 -927 2387 1719 1981 161 46 49 chr4 38448783 38449173 -163879174 - MLT1B LTR MaLR 0 390 2 5549 132 72 2 chr4 38449261 38450418 -163877929 - L1MA2 LINE L1 -1 6303 5068 1085 210 39 0 chr4 38450436 38450669 -163877678 - L1M1 LINE L1 -7306 259 18 193 293 71 43 chr4 38450737 38450810 -163877537 - MIR SINE MIR -2 260 191 285 51 0 0 chr4 38450810 38450849 -163877498 + (TG)n Simple_repeat Simple_repeat 2 40 0 193 293 71 43 chr4 38450849 38450915 -163877432 - MIR SINE MIR -71 191 117 28 29 0 0 chr4 38451029 38451064 -163877283 + AT_rich Low_complexity Low_complexity 1 35 0 1982 73 8 0 chr4 38451396 38451656 -163876691 + L1PA6 LINE L1 5893 6154 0 1014 273 32 23 chr4 38451663 38451971 -163876376 + MER87 LTR ERV1 231 541 0 231 88 0 0 chr4 38452373 38452407 -163875940 + (T)n Simple_repeat Simple_repeat 1 34 0 22 35 0 0 chr4 38454083 38454112 -163874235 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr4 38454412 38454442 -163873905 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr4 38455121 38455150 -163873197 + AT_rich Low_complexity Low_complexity 1 29 0 2241 192 19 2 chr4 38456656 38457067 -163871280 + MER47B DNA MER2_type 1 418 0 237 215 177 0 chr4 38457228 38457307 -163871040 + L2 LINE L2 3221 3313 0 324 230 70 20 chr4 38457586 38457686 -163870661 + L1MB4 LINE L1 6069 6173 -7 2429 146 49 7 chr4 38457924 38458335 -163870012 + MSTA LTR MaLR 1 428 0 244 275 82 126 chr4 38458974 38459181 -163869166 - MIR SINE MIR -64 198 1 406 292 101 29 chr4 38459383 38459592 -163868755 - MIR SINE MIR -31 231 8 33 56 0 0 chr4 38459833 38459887 -163868460 + AT_rich Low_complexity Low_complexity 1 54 0 2363 22 0 0 chr4 38459887 38460164 -163868183 - L1PA2 LINE L1 0 6155 5879 28 29 0 0 chr4 38460215 38460250 -163868097 + AT_rich Low_complexity Low_complexity 1 35 0 21 57 0 0 chr4 38460281 38460316 -163868031 + AT_rich Low_complexity Low_complexity 1 35 0 209 45 0 91 chr4 38460845 38460889 -163867458 + (A)n Simple_repeat Simple_repeat 1 40 0 952 329 158 42 chr4 38463684 38465190 -163863157 + L2 LINE L2 814 2547 -767 3714 136 53 5 chr4 38465190 38465773 -163862574 + LTR9 LTR ERV1 1 611 -1 952 329 158 42 chr4 38465773 38465993 -163862354 + L2 LINE L2 2547 2740 -574 294 338 46 57 chr4 38466044 38466325 -163862022 + L2 LINE L2 2883 3160 -153 277 322 13 123 chr4 38466404 38466631 -163861716 - L2 LINE L2 -92 3180 2979 2344 108 0 0 chr4 38467125 38467430 -163860917 + AluSx SINE Alu 1 305 -7 186 403 0 13 chr4 38469047 38469124 -163859223 - L2 LINE L2 -86 3186 3111 230 325 135 28 chr4 38469700 38469989 -163858358 - L2 LINE L2 -445 2869 2550 1650 242 119 45 chr4 38471990 38472502 -163855845 + MLT2B3 LTR ERVL 1 550 -4 390 244 109 29 chr4 38472517 38472741 -163855606 - MER46C DNA MER2_type -57 281 5 227 191 0 0 chr4 38474135 38474182 -163854165 - L1 LINE L1 -1821 4325 4279 339 265 94 53 chr4 38474182 38474352 -163853995 + L3 LINE CR1 1369 1545 -32 747 310 26 9 chr4 38476068 38476297 -163852050 + MIR SINE MIR 24 256 -6 2306 225 84 37 chr4 38477271 38478110 -163850237 - L1ME2 LINE L1 -78 6086 5205 23 54 0 0 chr4 38478191 38478228 -163850119 + AT_rich Low_complexity Low_complexity 1 37 0 2975 171 19 4 chr4 38478233 38478796 -163849551 + L1P LINE L1 3226 3797 -2349 2167 121 48 3 chr4 38478796 38479147 -163849200 + L1PA13 LINE L1 5791 6161 -2 436 213 21 13 chr4 38479255 38479367 -163848980 - L1ME3A LINE L1 0 6164 6059 271 278 98 0 chr4 38479382 38479515 -163848832 - MIR SINE MIR -60 202 57 1020 175 69 41 chr4 38480452 38480561 -163847786 + MER33 DNA MER1_type 26 131 -2454 2102 119 3 3 chr4 38480561 38480864 -163847483 + AluSx SINE Alu 1 303 -9 1020 175 69 41 chr4 38480864 38481045 -163847302 + MER33 DNA MER1_type 131 324 0 2900 91 2 0 chr4 38481192 38481590 -163846757 + L1PA13 LINE L1 5746 6144 -19 356 301 71 0 chr4 38481733 38481856 -163846491 - MIR SINE MIR -64 144 50 1127 207 58 4 chr4 38481866 38482108 -163846239 - L1PA16 LINE L1 -13 6153 5899 1369 191 78 19 chr4 38482333 38482652 -163845695 + MER58B DNA MER1_type 1 338 -3 209 304 76 0 chr4 38482737 38482816 -163845531 - L2 LINE L2 0 3272 3188 387 280 54 38 chr4 38482977 38483163 -163845184 - MIR SINE MIR -37 225 37 233 336 34 17 chr4 38483597 38483716 -163844631 - MIR SINE MIR -98 164 44 322 183 33 0 chr4 38483968 38484028 -163844319 + L2 LINE L2 2241 2302 -1012 29 47 0 0 chr4 38484268 38484311 -163844036 + AT_rich Low_complexity Low_complexity 1 43 0 2019 146 7 3 chr4 38484317 38484626 -163843721 + AluSx SINE Alu 3 312 0 267 152 0 0 chr4 38486690 38486736 -163841611 + (CA)n Simple_repeat Simple_repeat 2 47 0 183 310 98 71 chr4 38487349 38487533 -163840814 - MIR3 SINE MIR 0 208 20 2160 246 105 38 chr4 38488007 38489043 -163839304 - L1ME2 LINE L1 -35 6129 4062 22 35 0 0 chr4 38489092 38489121 -163839226 + AT_rich Low_complexity Low_complexity 1 29 0 736 217 49 69 chr4 38489244 38489552 -163838795 - L1ME2 LINE L1 -2998 3148 2843 333 0 0 0 chr4 38489852 38489889 -163838458 + (CA)n Simple_repeat Simple_repeat 2 38 0 411 317 108 51 chr4 38491997 38492744 -163835603 + L2 LINE L2 1615 2404 -910 288 303 112 39 chr4 38493519 38493697 -163834650 + MIR SINE MIR 72 262 0 28 29 0 0 chr4 38494588 38494623 -163833724 + AT_rich Low_complexity Low_complexity 1 35 0 683 206 7 14 chr4 38494875 38495042 -163833305 - FRAM SINE Alu 0 169 4 233 356 0 23 chr4 38496188 38496275 -163832072 + L2 LINE L2 3229 3313 0 1131 58 7 2 chr4 38496566 38496730 -163831617 - L1PA5 LINE L1 -6 6149 5988 455 355 12 33 chr4 38496770 38497015 -163831332 - MIR SINE MIR -12 250 11 495 291 81 31 chr4 38497542 38497803 -163830544 + MER20B DNA MER1_type 318 591 -192 21 0 0 0 chr4 38497809 38497830 -163830517 + AT_rich Low_complexity Low_complexity 1 21 0 261 200 0 0 chr4 38497859 38497909 -163830438 + MER20B DNA MER1_type 702 751 -32 200 222 0 0 chr4 38497973 38498018 -163830329 + (TTTA)n Simple_repeat Simple_repeat 3 47 0 288 306 83 9 chr4 38499477 38499585 -163828762 - L2 LINE L2 -2 3311 3196 1540 167 0 16 chr4 38500470 38500728 -163827619 - AluSx SINE Alu -22 290 37 29 0 0 0 chr4 38502322 38502351 -163825996 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 38503325 38503346 -163825001 + AT_rich Low_complexity Low_complexity 1 21 0 201 340 72 36 chr4 38503766 38503960 -163824387 - L2 LINE L2 -1227 2087 1887 29 28 0 0 chr4 38504444 38504480 -163823867 + AT_rich Low_complexity Low_complexity 1 36 0 926 145 44 0 chr4 38504606 38504765 -163823582 + MER2 DNA MER2_type 45 210 -135 339 226 0 0 chr4 38504807 38504869 -163823478 + MER2 DNA MER2_type 284 345 0 180 77 0 0 chr4 38505032 38505058 -163823289 + (GAAA)n Simple_repeat Simple_repeat 2 27 0 193 371 103 4 chr4 38505641 38505894 -163822453 - L2 LINE L2 -1195 2119 1842 29 28 0 0 chr4 38506441 38506477 -163821870 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr4 38508074 38508095 -163820252 + AT_rich Low_complexity Low_complexity 1 21 0 761 269 53 5 chr4 38509271 38509479 -163818868 - MIR SINE MIR -13 249 32 24 67 0 0 chr4 38509608 38509653 -163818694 + AT_rich Low_complexity Low_complexity 1 45 0 23 68 0 0 chr4 38510916 38510960 -163817387 + AT_rich Low_complexity Low_complexity 1 44 0 4857 91 29 12 chr4 38514687 38515416 -163812931 + L1PA13 LINE L1 5423 6163 0 211 269 56 56 chr4 38516368 38516476 -163811871 + L2 LINE L2 2747 2854 -460 1610 167 11 7 chr4 38519504 38519779 -163808568 - AluJo SINE Alu -34 278 3 23 68 0 0 chr4 38520408 38520452 -163807895 + AT_rich Low_complexity Low_complexity 1 44 0 243 0 0 0 chr4 38521123 38521150 -163807197 + (CA)n Simple_repeat Simple_repeat 2 28 0 207 188 29 14 chr4 38522443 38522512 -163805835 + (CATATA)n Simple_repeat Simple_repeat 6 75 0 328 321 54 103 chr4 38523014 38523459 -163804888 + L2 LINE L2 2850 3272 0 242 287 114 60 chr4 38524053 38524220 -163804127 + L2 LINE L2 3118 3293 -20 470 253 27 103 chr4 38525947 38526114 -163802233 + MIR SINE MIR 9 161 -64 288 53 0 0 chr4 38526669 38526707 -163801640 + (CA)n Simple_repeat Simple_repeat 2 39 0 180 367 0 0 chr4 38526958 38527007 -163801340 + L2 LINE L2 3202 3250 -22 369 43 0 0 chr4 38528729 38528776 -163799571 + (TG)n Simple_repeat Simple_repeat 2 48 0 230 252 213 24 chr4 38529887 38530014 -163798333 + L2 LINE L2 3161 3311 -2 1409 146 32 8 chr4 38530399 38530645 -163797702 + Tigger2a DNA MER2_type 1 252 -182 3331 154 10 18 chr4 38530754 38531351 -163796996 + L1PA16 LINE L1 5570 6161 -5 1807 313 94 28 chr4 38531351 38532544 -163795803 + L2 LINE L2 2034 3313 0 2246 90 17 0 chr4 38536013 38536303 -163792044 + AluSx SINE Alu 1 295 -17 585 167 17 223 chr4 38537220 38537626 -163790721 + L1MC4 LINE L1 7729 8039 -3 388 291 89 20 chr4 38539484 38539687 -163788660 - MIR SINE MIR -30 232 16 774 304 87 27 chr4 38540783 38541197 -163787150 - L2 LINE L2 -1 3312 2874 755 87 0 24 chr4 38541297 38541424 -163786923 - AluY SINE Alu 0 311 188 218 276 69 11 chr4 38541427 38541514 -163786833 - L2 LINE L2 -508 2806 2715 310 182 182 13 chr4 38541546 38541623 -163786724 - FLAM_A SINE Alu -13 120 31 1937 150 0 0 chr4 38541649 38541922 -163786425 + AluSx SINE Alu 1 273 -39 576 210 19 6 chr4 38541922 38542079 -163786268 + GA-rich Low_complexity Low_complexity 1 159 0 181 244 12 81 chr4 38542295 38542381 -163785966 - L3 LINE CR1 -1072 505 426 24 0 0 0 chr4 38544587 38544611 -163783736 + AT_rich Low_complexity Low_complexity 1 24 0 492 48 0 0 chr4 38545383 38545446 -163782901 + (CA)n Simple_repeat Simple_repeat 2 64 0 243 0 0 0 chr4 38546044 38546071 -163782276 + (A)n Simple_repeat Simple_repeat 1 27 0 2444 47 0 0 chr4 38546077 38546376 -163781971 + AluY SINE Alu 1 299 -12 233 254 0 0 chr4 38546388 38546451 -163781896 + L1MC4 LINE L1 6646 6708 -1334 450 325 148 48 chr4 38547005 38547571 -163780776 - L2 LINE L2 -685 2629 2007 189 74 0 0 chr4 38548531 38548558 -163779789 + (TG)n Simple_repeat Simple_repeat 2 28 0 327 175 0 16 chr4 38550096 38550159 -163778188 - L2 LINE L2 -1 3271 3210 198 312 83 46 chr4 38551881 38551990 -163776357 - MIR SINE MIR -73 135 23 1913 104 10 21 chr4 38553972 38554261 -163774086 - AluSc SINE Alu -12 297 12 2074 88 10 17 chr4 38554778 38555072 -163773275 - AluSc SINE Alu -12 297 6 226 319 112 65 chr4 38555297 38555466 -163772881 - MER5B DNA MER1_type -1 177 1 843 126 8 0 chr4 38555554 38555673 -163772674 + FLAM_C SINE Alu 3 122 -21 210 379 52 0 chr4 38556055 38556171 -163772176 - L2 LINE L2 -21 3292 3171 405 265 45 30 chr4 38556329 38556425 -163771922 + MIR SINE MIR 108 208 -54 4145 40 0 0 chr4 38556425 38556929 -163771418 + L1PA4 LINE L1 5652 6155 0 405 265 45 30 chr4 38556929 38556964 -163771383 + MIR SINE MIR 208 241 -21 22 0 0 0 chr4 38556986 38557008 -163771339 + AT_rich Low_complexity Low_complexity 1 22 0 418 319 56 12 chr4 38557474 38557647 -163770700 + MIR SINE MIR 26 207 -55 263 276 11 11 chr4 38608637 38608724 -163719623 + MLT1K LTR MaLR 481 567 -21 273 315 54 0 chr4 38608745 38608837 -163719510 - L2 LINE L2 -10 3303 3207 279 247 56 0 chr4 38609998 38610087 -163718260 - Charlie1 DNA MER1_type -39 2722 2629 1992 156 0 0 chr4 38610090 38610379 -163717968 - AluSx SINE Alu -23 289 1 2030 119 0 28 chr4 38610640 38610960 -163717387 - AluSx SINE Alu -1 311 1 412 143 50 75 chr4 38612518 38612679 -163715668 + L1MC5 LINE L1 7547 7703 -258 1163 248 58 84 chr4 38613052 38613178 -163715169 - HAL1 LINE L1 -1 2506 2378 2314 222 86 3 chr4 38613178 38613745 -163714602 - MER90 LTR ERV1 0 614 1 1163 248 58 84 chr4 38613745 38613973 -163714374 - HAL1 LINE L1 -129 2378 2146 2450 73 0 13 chr4 38613973 38614288 -163714059 - AluY SINE Alu 0 311 1 1163 248 58 84 chr4 38614288 38614638 -163713709 - HAL1 LINE L1 -361 2146 1819 1237 94 0 85 chr4 38614776 38614977 -163713370 + AluSp SINE Alu 119 302 -11 218 103 35 35 chr4 38615193 38615251 -163713096 + CT-rich Low_complexity Low_complexity 3 60 0 413 344 106 9 chr4 38615266 38615484 -163712863 - MIR SINE MIR -1 261 23 325 252 171 0 chr4 38615567 38615678 -163712669 + MIR SINE MIR 91 220 -42 2103 134 6 10 chr4 38616051 38616364 -163711983 - AluSx SINE Alu 0 312 1 2925 185 28 3 chr4 38616627 38617226 -163711121 - L1MA8 LINE L1 -6 6285 5672 386 311 171 5 chr4 38617316 38617509 -163710838 - MIR SINE MIR -32 230 6 2173 119 0 0 chr4 38617723 38618050 -163710297 - AluSq SINE Alu 0 327 1 24 67 0 0 chr4 38618326 38618371 -163709976 + AT_rich Low_complexity Low_complexity 1 45 0 374 195 37 0 chr4 38618730 38618812 -163709535 - MER65A LTR ERV1 0 445 361 * 511 155 68 0 chr4 38618802 38618905 -163709442 + MER65A LTR ERV1 336 445 0 30 59 0 0 chr4 38619032 38619083 -163709264 + AT_rich Low_complexity Low_complexity 1 51 0 422 233 23 90 chr4 38619176 38619309 -163709038 - L2 LINE L2 0 3313 3190 26602 69 4 2 chr4 38619397 38622924 -163705423 + L1P LINE L1 547 4080 -2066 795 296 128 17 chr4 38623640 38623998 -163704349 + MLT1I LTR MaLR 3 400 -9 594 257 154 40 chr4 38623988 38624358 -163703989 + MLT1K LTR MaLR 167 578 -10 * 255 213 0 0 chr4 38626037 38626084 -163702263 - MLT1K LTR MaLR 0 588 542 315 344 200 0 chr4 38627422 38627652 -163700695 + L1MEd LINE L1 561 836 -5283 221 274 291 26 chr4 38628043 38628160 -163700187 - MIR SINE MIR -81 181 34 253 346 103 7 chr4 38628299 38628435 -163699912 - MIR SINE MIR -88 174 26 206 319 193 7 chr4 38628604 38628739 -163699608 + MIR SINE MIR 85 244 -18 395 217 121 19 chr4 38628743 38628950 -163699397 + MER113 DNA MER1_type? 69 296 -225 344 262 21 50 chr4 38629997 38630138 -163698209 + L1MC5 LINE L1 7646 7782 -179 365 233 167 0 chr4 38631072 38631192 -163697155 + MIR SINE MIR 110 249 -13 2302 116 0 0 chr4 38631512 38631822 -163696525 + AluSx SINE Alu 1 310 -2 295 297 171 9 chr4 38632216 38632327 -163696020 + MIR SINE MIR 1 129 -133 26 0 0 0 chr4 38632451 38632477 -163695870 + AT_rich Low_complexity Low_complexity 1 26 0 187 79 53 0 chr4 38632482 38632520 -163695827 + (TA)n Simple_repeat Simple_repeat 2 41 0 238 357 74 41 chr4 38632656 38632900 -163695447 - L2 LINE L2 -413 2901 2650 389 400 53 4 chr4 38633122 38633387 -163694960 + L2 LINE L2 2480 2757 -557 190 375 19 19 chr4 38634094 38634198 -163694149 + L2 LINE L2 3179 3282 -31 417 264 18 42 chr4 38634529 38634696 -163693651 + GA-rich Low_complexity Low_complexity 3 165 0 293 347 92 22 chr4 38636145 38636459 -163691888 + L2 LINE L2 2808 3143 -170 1036 292 102 43 chr4 38636507 38637088 -163691259 - L2 LINE L2 -3 3310 2695 3097 161 46 0 chr4 38637088 38637592 -163690755 - MER1A DNA MER1_type 0 527 1 1036 292 102 43 chr4 38637592 38637658 -163690689 - L2 LINE L2 -618 2695 2634 622 277 16 27 chr4 38638508 38638692 -163689655 - MIR3 SINE MIR -8 200 19 917 325 58 25 chr4 38638798 38639375 -163688972 + L1MCa LINE L1 24 597 -5826 2068 250 51 30 chr4 38639522 38640327 -163688020 + L1MCa LINE L1 885 1712 -4889 1707 158 30 0 chr4 38640407 38640711 -163687636 + L1MC3 LINE L1 7257 7569 -216 404 20 0 0 chr4 38640720 38640769 -163687578 - MADE1 DNA Mariner -4 76 28 895 207 0 0 chr4 38640792 38640971 -163687376 + L1MC3 LINE L1 7575 7753 -32 305 226 58 51 chr4 38640974 38641111 -163687236 - MER113 DNA MER1_type? -383 138 1 254 310 35 0 chr4 38641649 38641736 -163686611 + MER117 DNA MER1_type 3 92 -105 210 248 248 80 chr4 38642696 38642809 -163685538 - L2 LINE L2 0 3272 3141 696 157 25 0 chr4 38643655 38643776 -163684571 - MER65A LTR ERV1 0 445 322 2442 259 103 60 chr4 38643876 38644505 -163683842 - HAL1 LINE L1 -814 1693 1093 2423 77 0 0 chr4 38644505 38644804 -163683543 + AluY SINE Alu 1 299 -12 2442 259 103 60 chr4 38644804 38645701 -163682646 - HAL1 LINE L1 -1414 1093 100 25 31 0 0 chr4 38645839 38645871 -163682476 + AT_rich Low_complexity Low_complexity 1 32 0 370 214 86 17 chr4 38648837 38648954 -163679393 - L1MC5 LINE L1 -108 7853 7729 189 0 0 0 chr4 38649452 38649473 -163678874 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 552 307 95 22 chr4 38649979 38650210 -163678137 + L3 LINE CR1 1055 1302 -275 1714 157 0 62 chr4 38651197 38651521 -163676826 + AluJb SINE Alu 1 304 -8 198 0 0 0 chr4 38651555 38651577 -163676770 + (T)n Simple_repeat Simple_repeat 1 22 0 399 323 23 0 chr4 38651636 38651766 -163676581 - MIR SINE MIR -12 250 118 639 204 57 40 chr4 38652186 38652362 -163675985 + MER3 DNA MER1_type 1 179 -30 28 48 0 0 chr4 38652680 38652722 -163675625 + AT_rich Low_complexity Low_complexity 1 42 0 2093 75 0 0 chr4 38652742 38653007 -163675340 - AluY SINE Alu -12 299 35 220 325 8 79 chr4 38654045 38654144 -163674203 - L2 LINE L2 -8 3264 3174 1078 212 31 25 chr4 38654144 38654465 -163673882 + MER33 DNA MER1_type 1 323 -1 220 325 8 79 chr4 38654465 38654491 -163673856 - L2 LINE L2 -98 3174 3148 685 270 99 5 chr4 38654828 38655039 -163673308 - MIR SINE MIR -31 231 1 2696 39 0 0 chr4 38655409 38655720 -163672627 - AluY SINE Alu 0 311 1 650 289 111 40 chr4 38655735 38656105 -163672242 + L2 LINE L2 2918 3313 0 476 214 55 53 chr4 38656903 38657102 -163671245 - MER106B DNA MER1_type -36 1023 1 205 298 181 32 chr4 38657109 38657203 -163671144 + L2 LINE L2 3164 3271 -1 202 250 48 48 chr4 38658195 38658299 -163670048 + L3b LINE CR1 1298 1401 -182 38 22 0 0 chr4 38659291 38659336 -163669011 + AT_rich Low_complexity Low_complexity 1 45 0 29 0 0 0 chr4 38659835 38659864 -163668483 + AT_rich Low_complexity Low_complexity 1 29 0 341 317 34 53 chr4 38661205 38661413 -163666934 + HAL1b LINE L1 277 480 -868 332 284 67 32 chr4 38661818 38662025 -163666322 - L1MEd LINE L1 -5013 1106 862 2574 139 5 31 chr4 38662025 38662470 -163665877 - Tigger2a DNA MER2_type -1 433 1 332 284 67 32 chr4 38662470 38662547 -163665800 - L1MEd LINE L1 -5257 862 789 315 104 0 0 chr4 38663127 38663175 -163665172 + (TG)n Simple_repeat Simple_repeat 1 48 0 192 406 104 10 chr4 38663223 38663415 -163664932 + L2 LINE L2 2874 3083 -189 235 286 87 61 chr4 38664445 38664676 -163663671 - L1M1 LINE L1 -4621 2944 2708 325 317 18 35 chr4 38664739 38664966 -163663381 - L1MEd LINE L1 -4879 1240 1018 1827 137 31 53 chr4 38665071 38665392 -163662955 - THE1B LTR MaLR -49 315 2 637 266 13 25 chr4 38665392 38665550 -163662797 - MIR SINE MIR -103 159 4 288 323 50 0 chr4 38665802 38665901 -163662446 + L2 LINE L2 3202 3305 -8 225 266 64 53 chr4 38666600 38666694 -163661653 - LTR16A1 LTR ERVL -112 345 251 1736 153 29 77 chr4 38666830 38667209 -163661138 - MLT1B LTR MaLR 0 390 30 691 161 0 51 chr4 38667525 38667662 -163660685 - FLAM_C SINE Alu -3 130 1 471 395 43 0 chr4 38668377 38668610 -163659737 + L2 LINE L2 2560 2802 -512 404 263 23 0 chr4 38668656 38668789 -163659558 + Charlie4 DNA MER1_type 1820 1955 -6 1631 81 8 92 chr4 38668800 38669061 -163659286 + AluSq SINE Alu 1 239 -74 381 231 45 126 chr4 38669099 38669298 -163659049 + L2 LINE L2 3094 3276 -37 2136 109 13 0 chr4 38669511 38669815 -163658532 - L1PA16 LINE L1 -172 5994 5687 217 146 0 36 chr4 38669937 38669992 -163658355 + (GAAAA)n Simple_repeat Simple_repeat 3 55 0 186 43 0 0 chr4 38671108 38671131 -163657216 + (CCCCCA)n Simple_repeat Simple_repeat 1 23 0 219 234 62 16 chr4 38671416 38671480 -163656867 + L2 LINE L2 3205 3271 -1 22 56 0 0 chr4 38671519 38671555 -163656792 + AT_rich Low_complexity Low_complexity 1 36 0 782 278 137 30 chr4 38672032 38672646 -163655701 - L2 LINE L2 -90 3223 2550 457 281 56 75 chr4 38674375 38674902 -163653445 + L2 LINE L2 2513 3149 -164 1877 155 0 7 chr4 38675208 38675511 -163652836 + AluJb SINE Alu 1 301 -11 2154 164 40 26 chr4 38676671 38677091 -163651256 + MSTB LTR MaLR 1 426 0 243 0 0 0 chr4 38678250 38678277 -163650070 + (CAAAAA)n Simple_repeat Simple_repeat 2 28 0 1965 126 38 7 chr4 38678305 38678598 -163649749 + AluSx SINE Alu 1 302 -10 1958 173 50 27 chr4 38678663 38679103 -163649244 + L1MB2 LINE L1 5720 6169 -2 338 326 53 0 chr4 38679319 38679414 -163648933 + MIR SINE MIR 48 147 -61 741 297 5 0 chr4 38679802 38679997 -163648350 + MIR SINE MIR 56 251 -11 189 309 148 12 chr4 38680821 38680902 -163647445 - L2 LINE L2 -48 3224 3133 880 171 46 78 chr4 38681969 38682134 -163646213 - MER65A LTR ERV1 -235 210 52 2270 85 0 22 chr4 38682134 38682451 -163645896 - AluY SINE Alu -1 310 1 880 171 46 78 chr4 38682451 38682502 -163645845 - MER65A LTR ERV1 -393 52 1 2284 229 70 8 chr4 38682503 38683100 -163645247 - MER65A-int LTR ERV1 -1 4870 4237 1003 247 114 0 chr4 38683100 38683363 -163644984 - MER65A-int LTR ERV1 -739 4132 3840 344 203 0 0 chr4 38683427 38683486 -163644861 - MER31-int LTR ERV1 -525 4411 4353 886 153 94 20 chr4 38683563 38683766 -163644581 - MER31-int LTR ERV1 -1145 3791 3574 524 269 117 51 chr4 38684030 38684287 -163644060 - MER102a DNA MER1_type -1 329 56 359 314 10 10 chr4 38684596 38684698 -163643649 + L2 LINE L2 3169 3270 -43 884 269 106 51 chr4 38685198 38685790 -163642557 - MER65-int LTR ERV1 -2746 5374 4750 24 96 0 0 chr4 38685792 38685865 -163642482 + AT_rich Low_complexity Low_complexity 1 73 0 306 177 85 0 chr4 38685978 38686142 -163642205 + (TA)n Simple_repeat Simple_repeat 2 179 0 33 56 0 0 chr4 38686142 38686196 -163642151 + AT_rich Low_complexity Low_complexity 1 54 0 1109 180 60 88 chr4 38686224 38686703 -163641644 - MER65-int LTR ERV1 -2096 4235 3730 565 216 34 49 chr4 38686778 38686982 -163641365 - MER65-int LTR ERV1 -2861 3737 3537 5902 185 70 81 chr4 38687059 38688565 -163639782 - MER65-int LTR ERV1 -2378 2493 1763 267 103 0 0 chr4 38688565 38688604 -163639743 + (CA)n Simple_repeat Simple_repeat 2 40 0 5902 185 70 81 chr4 38688604 38689772 -163638575 - MER65-int LTR ERV1 -3108 1763 583 2167 96 0 3 chr4 38689772 38690075 -163638272 - AluY SINE Alu 0 304 3 4097 99 83 35 chr4 38690242 38691548 -163636799 + pTR5 LTR ERV1 743 2468 0 661 220 60 56 chr4 38691551 38691801 -163636546 - MER65-int LTR ERV1 -4560 311 61 2226 163 11 6 chr4 38692106 38692469 -163635878 - MLT1A1 LTR MaLR 0 365 1 359 336 73 39 chr4 38693097 38693329 -163635018 + MIR SINE MIR 20 259 -3 309 320 25 16 chr4 38693453 38693575 -163634772 + MIR3 SINE MIR 85 207 -1 1837 199 3 3 chr4 38694038 38694374 -163633973 - MER7A DNA MER2_type 0 346 13 29 28 0 0 chr4 38694386 38694422 -163633925 + AT_rich Low_complexity Low_complexity 1 36 0 6386 126 9 26 chr4 38694428 38695545 -163632802 - L1PB1 LINE L1 0 6151 5069 2000 152 3 0 chr4 38695545 38695842 -163632505 - AluSx SINE Alu -12 300 3 6386 126 9 26 chr4 38695842 38696139 -163632208 - L1PB1 LINE L1 -1082 5069 4768 234 313 61 10 chr4 38696711 38696810 -163631537 - MIR SINE MIR -6 256 153 413 281 118 0 chr4 38696908 38697043 -163631304 + MIR SINE MIR 34 184 -78 26 30 0 0 chr4 38697079 38697112 -163631235 + AT_rich Low_complexity Low_complexity 1 33 0 932 252 51 13 chr4 38697519 38697753 -163630594 - MIR SINE MIR 0 262 20 651 281 41 21 chr4 38698644 38698886 -163629461 + MIR SINE MIR 3 249 -13 2215 105 3 0 chr4 38698993 38699288 -163629059 + AluSp SINE Alu 1 296 -17 24 0 0 0 chr4 38699454 38699478 -163628869 + AT_rich Low_complexity Low_complexity 1 24 0 249 139 0 0 chr4 38699758 38699801 -163628546 + (GA)n Simple_repeat Simple_repeat 2 44 0 1080 231 87 73 chr4 38700347 38701263 -163627084 + L1ME2 LINE L1 5122 6087 -77 297 268 12 0 chr4 38701303 38701385 -163626962 + (TA)n Simple_repeat Simple_repeat 1 83 0 404 253 105 11 chr4 38701411 38701601 -163626746 + L1ME3A LINE L1 5743 5950 -220 191 265 41 0 chr4 38701823 38701872 -163626475 - MIR SINE MIR -15 247 197 198 0 0 0 chr4 38701879 38701901 -163626446 + (TG)n Simple_repeat Simple_repeat 2 23 0 3634 138 160 6 chr4 38701916 38702963 -163625384 + Tigger3(Golem) DNA MER2_type 21 3025 -4 495 259 38 25 chr4 38703004 38703162 -163625185 - MIR SINE MIR -95 167 8 213 297 161 0 chr4 38703525 38703643 -163624704 - MIR SINE MIR -72 190 54 326 286 48 42 chr4 38703770 38703959 -163624388 + MIR SINE MIR 73 262 0 27 81 0 0 chr4 38704072 38704134 -163624213 + AT_rich Low_complexity Low_complexity 1 62 0 987 225 87 58 chr4 38705196 38705369 -163622978 + MLT1B LTR MaLR 1 168 -260 189 0 0 0 chr4 38705369 38705390 -163622957 + (TC)n Simple_repeat Simple_repeat 1 21 0 987 225 87 58 chr4 38705390 38705587 -163622760 + MLT1B LTR MaLR 168 428 0 22 0 0 0 chr4 38705699 38705721 -163622626 + AT_rich Low_complexity Low_complexity 1 22 0 294 29 0 0 chr4 38705867 38705902 -163622445 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 23 92 0 0 chr4 38706347 38706412 -163621935 + AT_rich Low_complexity Low_complexity 1 65 0 1838 170 140 45 chr4 38707943 38708414 -163619933 + MER34 LTR ERV1 27 542 0 318 279 147 7 chr4 38708750 38708886 -163619461 + MIR SINE MIR 13 167 -95 264 330 36 36 chr4 38709003 38709115 -163619232 - L2 LINE L2 -22 3291 3180 257 356 76 8 chr4 38709779 38709897 -163618450 - L2 LINE L2 -9 3263 3138 1252 226 50 47 chr4 38711494 38711959 -163616388 - LTR37B LTR ERV1 -2 466 1 276 210 284 0 chr4 38712251 38712332 -163616015 + L1ME3A LINE L1 6059 6162 -8 2118 106 7 13 chr4 38712704 38713032 -163615315 + AluSx SINE Alu 1 312 0 1273 249 21 42 chr4 38713477 38713859 -163614488 + MLT1A2 LTR MaLR 1 374 0 280 275 188 31 chr4 38713859 38714019 -163614328 + L2 LINE L2 2553 2737 -577 470 302 84 19 chr4 38715206 38715421 -163612926 + MIR SINE MIR 24 252 -10 204 40 0 0 chr4 38716382 38716407 -163611940 + (A)n Simple_repeat Simple_repeat 1 25 0 23 0 0 0 chr4 38717343 38717366 -163610981 + GC_rich Low_complexity Low_complexity 1 23 0 25 51 0 0 chr4 38717513 38717552 -163610795 + GC_rich Low_complexity Low_complexity 1 39 0 1855 136 10 10 chr4 38718150 38718444 -163609903 - AluSx SINE Alu -14 298 5 21 0 0 0 chr4 38718451 38718472 -163609875 + AT_rich Low_complexity Low_complexity 1 21 0 1963 135 0 22 chr4 38718987 38719298 -163609049 - AluSx SINE Alu -8 304 1 821 238 182 25 chr4 38719962 38720248 -163608099 + HsTC2 DNA Tc2 6 336 -1562 267 156 26 52 chr4 38720235 38720312 -163608035 + HsTC2 DNA Tc2 1709 1783 -115 * 33 0 0 0 chr4 38720313 38720346 -163608001 + AT_rich Low_complexity Low_complexity 1 33 0 4901 148 23 31 chr4 38720448 38721407 -163606940 + L1PA16 LINE L1 5214 6165 -1 331 266 146 82 chr4 38721890 38722088 -163606259 + MER102b DNA MER1_type 1 228 -1200 2044 121 7 17 chr4 38722088 38722385 -163605962 + AluSx SINE Alu 1 294 -18 331 266 146 82 chr4 38722385 38722502 -163605845 + MER102b DNA MER1_type 228 336 -5 325 281 17 34 chr4 38722869 38723047 -163605300 + (TA)n Simple_repeat Simple_repeat 2 176 0 331 331 75 50 chr4 38723582 38723913 -163604434 - L2 LINE L2 -212 3060 2726 25 65 0 0 chr4 38726314 38726360 -163601987 + AT_rich Low_complexity Low_complexity 1 46 0 228 35 0 0 chr4 38726388 38726417 -163601930 + (CA)n Simple_repeat Simple_repeat 2 30 0 2286 91 10 10 chr4 38726427 38726734 -163601613 - AluSc SINE Alu -2 307 1 579 287 106 21 chr4 38726841 38727029 -163601318 - MIR SINE MIR -11 251 48 384 242 0 11 chr4 38728029 38728120 -163600227 - MER103 DNA DNA -75 91 2 198 289 52 62 chr4 38728761 38728858 -163599489 - MIR SINE MIR 0 262 167 21 36 0 0 chr4 38728868 38728896 -163599451 + AT_rich Low_complexity Low_complexity 1 28 0 1634 182 3 35 chr4 38728920 38729238 -163599109 - AluJo SINE Alu -4 308 1 310 273 20 40 chr4 38729241 38729340 -163599007 - MIR SINE MIR -115 147 51 235 227 196 0 chr4 38729402 38729499 -163598848 - MLT1J LTR MaLR -18 493 378 1388 202 47 16 chr4 38729527 38729844 -163598503 + MLT1A1 LTR MaLR 26 352 -13 325 337 0 0 chr4 38729850 38730025 -163598322 + (CAGC)n Simple_repeat Simple_repeat 2 176 0 224 359 6 0 chr4 38730101 38730268 -163598079 + (CAGC)n Simple_repeat Simple_repeat 2 169 0 749 312 52 55 chr4 38730270 38730566 -163597781 - MLT1J LTR MaLR -185 326 30 487 57 57 0 chr4 38730566 38730654 -163597693 + (TA)n Simple_repeat Simple_repeat 1 93 0 749 312 52 55 chr4 38730654 38730684 -163597663 - MLT1J LTR MaLR -481 30 1 1107 116 32 21 chr4 38731004 38731193 -163597154 + L1PA10 LINE L1 5978 6168 0 2264 118 0 9 chr4 38732550 38732865 -163595482 + AluSx SINE Alu 1 312 0 1157 259 56 38 chr4 38733484 38734031 -163594316 - MLT2E LTR ERVL 0 628 25 221 252 189 27 chr4 38734082 38734193 -163594154 + MIR SINE MIR 131 259 -3 748 320 20 70 chr4 38734275 38734763 -163593584 + LTR16B LTR ERVL 1 464 0 396 114 11 34 chr4 38735662 38735750 -163592597 + (TTCC)n Simple_repeat Simple_repeat 3 88 0 23 0 0 0 chr4 38736068 38736091 -163592256 + AT_rich Low_complexity Low_complexity 1 23 0 795 228 0 6 chr4 38736167 38736334 -163592013 + FRAM SINE Alu 1 166 0 288 244 24 37 chr4 38736527 38736609 -163591738 + MIR3 SINE MIR 119 199 -9 190 197 0 171 chr4 38737408 38737484 -163590863 + L2 LINE L2 3246 3308 -5 228 35 0 0 chr4 38737797 38737826 -163590521 + (A)n Simple_repeat Simple_repeat 1 29 0 1605 162 54 0 chr4 38740727 38741005 -163587342 + AluSx SINE Alu 1 293 -19 742 121 0 10 chr4 38742341 38742601 -163585746 + AluSx SINE Alu 1 354 0 21 36 0 0 chr4 38743145 38743173 -163585174 + AT_rich Low_complexity Low_complexity 1 28 0 241 179 60 37 chr4 38743465 38743599 -163584748 + (TA)n Simple_repeat Simple_repeat 2 138 0 226 306 187 15 chr4 38744546 38744680 -163583667 + MER5A DNA MER1_type 33 189 0 2203 110 13 10 chr4 38744690 38745000 -163583347 - AluSx SINE Alu 0 312 2 1544 201 0 20 chr4 38745574 38745868 -163582479 - AluJo SINE Alu -24 288 1 3066 143 12 4 chr4 38746711 38747199 -163581148 - LTR38 LTR ERV1 -64 492 1 1971 225 166 0 chr4 38748197 38748779 -163579568 - L1MD3 LINE L1 -2 7993 5676 198 118 0 0 chr4 38752982 38753016 -163575331 + (TG)n Simple_repeat Simple_repeat 2 35 0 1694 117 3 65 chr4 38753135 38753426 -163574921 + AluSc SINE Alu 1 273 -36 216 0 0 0 chr4 38753426 38753450 -163574897 + (CAAA)n Simple_repeat Simple_repeat 3 26 0 510 286 74 11 chr4 38753450 38753625 -163574722 + MER5A DNA MER1_type 3 188 -1 3872 121 11 28 chr4 38754546 38755165 -163573182 - MER4B LTR ERV1 0 610 2 281 281 10 21 chr4 38756065 38756161 -163572186 - L1ME4a LINE L1 -63 6058 5964 272 313 16 39 chr4 38756418 38756600 -163571747 + (CA)n Simple_repeat Simple_repeat 2 179 0 213 261 15 0 chr4 38756694 38756759 -163571588 + (CA)n Simple_repeat Simple_repeat 1 66 0 494 305 117 14 chr4 38757099 38757381 -163570966 + LTR33 LTR ERVL 210 520 -1 571 229 40 49 chr4 38757533 38757756 -163570591 - L1ME4a LINE L1 -195 5975 5755 243 0 0 0 chr4 38758177 38758204 -163570143 + (TTAA)n Simple_repeat Simple_repeat 4 30 0 1664 177 0 7 chr4 38758204 38758475 -163569872 - AluJb SINE Alu -25 287 19 225 266 11 53 chr4 38758678 38758772 -163569575 - MER20B DNA MER1_type -629 154 65 206 298 70 76 chr4 38759287 38759445 -163568902 + L2 LINE L2 3130 3286 -27 437 351 26 7 chr4 38759711 38759862 -163568485 + L2 LINE L2 3115 3268 -4 3002 186 70 5 chr4 38759988 38760602 -163567745 + LTR65 LTR ERV1 8 661 -8 455 255 152 7 chr4 38760632 38760777 -163567570 - MER5B DNA MER1_type 0 178 13 426 329 136 5 chr4 38762510 38762723 -163565624 + MLT1I LTR MaLR 79 319 -90 275 271 147 0 chr4 38763029 38763158 -163565189 - MIR SINE MIR -13 249 102 186 143 0 0 chr4 38763206 38763241 -163565106 - L2 LINE L2 -4 3309 3275 267 288 100 38 chr4 38763454 38763614 -163564733 + MLT1E LTR MaLR 157 326 -298 630 180 0 47 chr4 38763635 38763763 -163564584 - FLAM_C SINE Alu -17 126 5 1002 280 29 13 chr4 38763775 38764086 -163564261 + MLT1E LTR MaLR 277 592 -1 231 36 0 0 chr4 38765346 38765374 -163562973 + (GCTTG)n Simple_repeat Simple_repeat 5 32 0 1592 121 136 11 chr4 38765466 38765621 -163562726 - AluSg SINE Alu -13 297 163 243 88 0 0 chr4 38765621 38765655 -163562692 + (TG)n Simple_repeat Simple_repeat 1 34 0 1592 121 136 11 chr4 38765655 38765763 -163562584 - AluSg SINE Alu -147 163 1 240 305 35 85 chr4 38765901 38766042 -163562305 + MIR3 SINE MIR 21 154 -54 672 237 87 0 chr4 38766441 38766614 -163561733 - MER5A DNA MER1_type 0 189 2 751 229 123 20 chr4 38766660 38766913 -163561434 + Charlie4a DNA MER1_type 21 299 -209 9550 42 6 1 chr4 38767026 38768982 -163559365 + L1PA5 LINE L1 4190 6152 -2 202 319 96 11 chr4 38769703 38769797 -163558550 + L2 LINE L2 2887 2988 -284 408 299 120 22 chr4 38770984 38771168 -163557179 - MIR SINE MIR -46 216 15 955 213 30 61 chr4 38771306 38771569 -163556778 + MLT1E2 LTR MaLR 1 255 -371 448 213 96 0 chr4 38771603 38771697 -163556650 - MER63 DNA MER1_type -333 729 1 188 309 18 0 chr4 38771723 38771778 -163556569 - MIR SINE MIR -118 144 89 516 279 79 57 chr4 38772375 38772640 -163555707 - LTR33 LTR ERVL -234 287 17 200 214 54 36 chr4 38774252 38774308 -163554039 + MIR SINE MIR 96 152 -56 436 238 222 26 chr4 38774463 38774652 -163553695 + LTR50 LTR ERVL 65 290 -505 1294 177 111 58 chr4 38774760 38775122 -163553225 - MLT1B LTR MaLR 0 390 10 505 310 141 11 chr4 38775107 38775455 -163552892 + LTR50 LTR ERVL 394 786 -9 * 1767 298 114 46 chr4 38775467 38776415 -163551932 - L2 LINE L2 -316 2997 1991 1215 119 4 123 chr4 38776436 38776713 -163551634 + Tigger4(Zombi) DNA MER2_type 2488 2731 0 534 243 22 132 chr4 38777002 38777274 -163551073 - MIR SINE MIR -3 259 18 284 279 96 29 chr4 38778309 38778413 -163549934 - L2 LINE L2 -2 3270 3160 355 340 9 56 chr4 38778413 38778645 -163549702 - MIR SINE MIR -13 249 29 596 274 178 8 chr4 38779209 38779519 -163548828 + MLT2E LTR ERVL 15 422 -206 242 238 16 0 chr4 38779570 38779633 -163548714 + MLT2E LTR ERVL 533 596 -32 22 35 0 0 chr4 38780137 38780166 -163548181 + AT_rich Low_complexity Low_complexity 1 29 0 2497 187 29 13 chr4 38780405 38781020 -163547327 - L1MC3 LINE L1 -1 7784 7160 1682 175 19 0 chr4 38781021 38781329 -163547018 - MLT1C LTR MaLR -1 466 153 240 211 40 23 chr4 38781723 38781898 -163546449 + (TA)n Simple_repeat Simple_repeat 1 178 0 2110 143 14 6 chr4 38782845 38783196 -163545151 - MLT1A1 LTR MaLR -8 357 4 347 253 212 54 chr4 38785829 38786070 -163542277 + L2 LINE L2 3033 3311 -2 340 264 0 22 chr4 38786206 38786297 -163542050 + L2 LINE L2 3215 3303 -10 190 326 37 74 chr4 38786723 38786858 -163541489 - L2 LINE L2 -211 3061 2932 7398 174 129 42 chr4 38786878 38788076 -163540271 - L1MCa LINE L1 -4250 2176 1084 1840 166 41 12 chr4 38788076 38788420 -163539927 - L1PA15 LINE L1 -1 6164 5811 7398 174 129 42 chr4 38788420 38788884 -163539463 - L1MCa LINE L1 -5342 1084 662 2215 110 72 20 chr4 38788884 38789229 -163539118 + THE1B LTR MaLR 1 363 -1 7398 174 129 42 chr4 38789229 38789559 -163538788 - L1MCa LINE L1 -5764 662 9 205 110 98 24 chr4 38790147 38790229 -163538118 + (AATAG)n Simple_repeat Simple_repeat 3 90 0 231 324 90 32 chr4 38790555 38790833 -163537514 - MER102a DNA MER1_type 0 330 37 645 148 90 0 chr4 38791063 38791185 -163537162 - Tigger1 DNA MER2_type -290 2128 1996 1063 153 0 16 chr4 38791190 38791379 -163536968 - L1PB1 LINE L1 0 6151 5966 2270 108 3 0 chr4 38791381 38791677 -163536670 - AluSg SINE Alu -11 299 3 1267 195 28 7 chr4 38791760 38792047 -163536300 - L1MB1 LINE L1 -1 6167 5875 221 303 182 30 chr4 38792785 38792917 -163535430 - MER5B DNA MER1_type -1 177 37 21 36 0 0 chr4 38793129 38793157 -163535190 + AT_rich Low_complexity Low_complexity 1 28 0 677 280 12 64 chr4 38796814 38797157 -163531190 + MER46C DNA MER2_type 6 330 -8 23 0 10 0 chr4 38797773 38797841 -163530506 + AT_rich Low_complexity Low_complexity 1 23 0 8097 85 2 32 chr4 38798018 38799254 -163529093 - HERV17 LTR ERV1 -1950 6676 5479 3916 241 39 21 chr4 38799512 38800698 -163527649 - L1M2 LINE L1 -4737 2472 1238 2084 139 34 42 chr4 38801341 38801910 -163526437 - L1P4 LINE L1 -486 5679 5121 180 0 0 0 chr4 38801910 38801930 -163526417 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2084 139 34 42 chr4 38801930 38802189 -163526158 - L1P4 LINE L1 -1044 5121 4861 283 156 69 107 chr4 38802197 38802359 -163525988 - AluSg/x SINE Alu -16 284 147 1329 300 19 16 chr4 38802958 38803565 -163524782 - ERVL LTR ERVL -4892 872 192 2059 102 0 0 chr4 38803565 38803839 -163524508 + AluSc SINE Alu 1 274 -35 3639 227 26 20 chr4 38804275 38805361 -163522986 + L1P LINE L1 2439 3530 -2616 808 189 61 0 chr4 38806427 38806591 -163521756 + MLT-int LTR MaLR 259 432 -1303 1647 115 70 0 chr4 38806592 38806836 -163521511 - AluSx SINE Alu -9 303 43 355 275 69 8 chr4 38806939 38807070 -163521277 + MIR SINE MIR 123 261 -1 231 377 66 9 chr4 38807257 38807469 -163520878 - HAL1 LINE L1 -1895 612 389 3881 142 10 3 chr4 38808381 38809056 -163519291 - Tigger1 DNA MER2_type -368 2050 1371 339 332 35 40 chr4 38809066 38809412 -163518935 + L1PA12 LINE L1 7 350 -7231 7284 73 6 6 chr4 38810143 38811146 -163517201 - HERV17 LTR ERV1 -3275 5351 4349 1498 74 0 52 chr4 38811144 38811375 -163516972 + HERV17 LTR ERV1 466 684 -7942 * 520 177 27 7 chr4 38811544 38811691 -163516656 + GA-rich Low_complexity Low_complexity 2 151 0 302 230 11 0 chr4 38812135 38812225 -163516122 - MLT1J2 LTR MaLR -308 142 70 7012 60 7 0 chr4 38812668 38813709 -163514638 - L1PA6 LINE L1 -6 6148 5105 3355 171 13 10 chr4 38814546 38815149 -163513198 - MER6A DNA MER2_type 0 605 1 26 30 0 0 chr4 38815300 38815333 -163513014 + AT_rich Low_complexity Low_complexity 1 33 0 705 244 34 30 chr4 38815986 38816220 -163512127 + MLT1B LTR MaLR 3 237 -153 13530 92 14 5 chr4 38816325 38818042 -163510305 - L1P LINE L1 -2098 4048 2309 180 0 0 0 chr4 38818042 38818062 -163510285 + (TG)n Simple_repeat Simple_repeat 1 20 0 13530 92 14 5 chr4 38818062 38818399 -163509948 - L1P LINE L1 -3837 2309 1976 6090 206 16 17 chr4 38818699 38820202 -163508145 + L1P LINE L1 3387 4888 -1258 1792 142 25 11 chr4 38820202 38820476 -163507871 + AluSc SINE Alu 1 278 -31 467 287 40 23 chr4 38821092 38821266 -163507081 - MIR SINE MIR -20 242 66 2570 147 50 59 chr4 38821342 38821939 -163506408 - LTR9 LTR ERV1 -11 601 10 217 244 22 56 chr4 38822171 38822261 -163506086 + MIR SINE MIR 71 157 -105 285 289 94 0 chr4 38822264 38822392 -163505955 - MIR SINE MIR 0 262 123 239 202 36 80 chr4 38822410 38822558 -163505789 - MLT1H LTR MaLR -16 533 444 * 448 244 74 74 chr4 38822545 38822787 -163505560 - MLT1H LTR MaLR -226 323 82 760 198 17 59 chr4 38823424 38823661 -163504686 + Charlie5 DNA MER1_type 2398 2624 0 221 57 29 0 chr4 38824600 38824635 -163503712 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 532 113 0 21 chr4 38825116 38825213 -163503134 + L1P4 LINE L1 5378 5472 -693 2541 203 42 12 chr4 38825844 38826553 -163501794 + L1MB2 LINE L1 5174 5906 -265 2166 174 34 0 chr4 38826553 38826962 -163501385 - Tigger1 DNA MER2_type 0 2418 1996 472 129 0 21 chr4 38826969 38827062 -163501285 - L1PB1 LINE L1 0 6151 6061 1878 183 85 23 chr4 38827446 38827844 -163500503 + MSTB1 LTR MaLR 1 423 -9 5061 97 7 7 chr4 38827942 38828673 -163499674 + L1PB1 LINE L1 5420 6150 -1 407 137 14 0 chr4 38830263 38830336 -163498011 + CT-rich Low_complexity Low_complexity 4 77 0 254 309 36 18 chr4 38831249 38831359 -163496988 + LTR67 LTR ERVL 332 443 -114 415 333 26 6 chr4 38833085 38833241 -163495106 + MIR SINE MIR 2 160 -102 2237 92 0 0 chr4 38834618 38834932 -163493415 + AluY SINE Alu 1 311 0 850 182 0 0 chr4 38835229 38835377 -163492970 - MSTC LTR MaLR 0 428 281 1849 89 57 14 chr4 38835378 38835658 -163492689 - AluY SINE Alu -2 309 18 1607 174 0 10 chr4 38835795 38836083 -163492264 - AluSg SINE Alu -25 285 1 14599 193 23 5 chr4 38836083 38841441 -163486906 - L1PB1 LINE L1 -178 6689 1093 3383 248 62 8 chr4 38841444 38842432 -163485915 - L1PB1 LINE L1 -5817 1046 6 9707 135 74 91 chr4 38842441 38843272 -163485075 - Tigger1 DNA MER2_type -408 2010 1167 713 173 24 16 chr4 38843272 38843399 -163484948 + FLAM_A SINE Alu 1 128 -14 9707 135 74 91 chr4 38843399 38844483 -163483864 - Tigger1 DNA MER2_type -1251 1167 2 1203 206 8 11 chr4 38844484 38844751 -163483596 + L1MB2 LINE L1 5905 6170 -1 1354 260 26 55 chr4 38846806 38847387 -163480960 + L1M3b LINE L1 8 553 -5728 387 299 145 58 chr4 38848431 38848672 -163479675 - MIR SINE MIR 0 262 1 1686 228 5 27 chr4 38848891 38849264 -163479083 - MLT1A1 LTR MaLR 0 365 1 4757 74 36 3 chr4 38849329 38849967 -163478380 - PABL_A LTR ERV1 0 660 2 401 251 34 56 chr4 38850536 38850715 -163477632 + MER104 DNA Tc2 2 176 -4 875 330 108 5 chr4 38851035 38851444 -163476903 + LTR16C LTR ERVL 1 451 -40 474 296 117 10 chr4 38851947 38852143 -163476204 + MER68 LTR ERV1 346 562 0 437 154 26 0 chr4 38852791 38852869 -163475478 - MADE1 DNA Mariner 0 80 1 651 178 35 98 chr4 38853317 38853490 -163474857 + MER44D DNA MER2_type 1 432 -177 610 152 0 10 chr4 38853490 38853589 -163474758 + MER4A LTR ERV1 1 98 -566 1682 127 8 96 chr4 38853589 38853978 -163474369 + MER4A LTR ERV1 261 664 0 1015 175 11 0 chr4 38853979 38854156 -163474191 + MER44D DNA MER2_type 526 704 -1 248 409 43 0 chr4 38854683 38854798 -163473549 + L2 LINE L2 3144 3263 -9 32 57 0 0 chr4 38854846 38854899 -163473448 + AT_rich Low_complexity Low_complexity 1 53 0 1015 184 86 17 chr4 38855655 38855888 -163472459 - L1MB1 LINE L1 -5 6184 5936 * 8869 200 17 59 chr4 38855886 38856067 -163472280 + L1P LINE L1 3004 3191 -2955 2414 67 0 10 chr4 38856067 38856367 -163471980 + AluY SINE Alu 1 297 -14 8869 200 17 59 chr4 38856367 38858611 -163469736 + L1P LINE L1 3191 5327 -819 2419 53 0 17 chr4 38858616 38858915 -163469432 + AluY SINE Alu 2 295 -16 565 96 10 10 chr4 38860384 38860488 -163467859 + (TAGA)n Simple_repeat Simple_repeat 4 107 0 331 125 0 18 chr4 38860922 38860978 -163467369 - MLT2A2 LTR ERVL 0 453 399 310 323 0 0 chr4 38861000 38861093 -163467254 - L1MC4 LINE L1 -1336 6706 6614 307 309 18 9 chr4 38861068 38861178 -163467169 + L1MC4 LINE L1 6615 6725 -1317 * 2260 128 78 5 chr4 38861200 38861574 -163466773 - MLT2A1 LTR ERVL -41 403 3 5133 71 1 26 chr4 38861576 38862311 -163466036 - HERVL-A1 LTR ERVL 0 5654 4938 2213 72 48 0 chr4 38862308 38862599 -163465748 - HERVL LTR ERVL -4233 1421 1117 * 674 235 108 12 chr4 38862701 38863024 -163465323 + L1M1 LINE L1 3314 3667 -3898 1771 121 104 48 chr4 38863024 38863379 -163464968 - THE1C LTR MaLR 0 375 1 1794 62 0 0 chr4 38863384 38863609 -163464738 - THE1C-int LTR MaLR -6 1574 1350 * 4227 164 90 14 chr4 38863605 38864406 -163463941 - THE1C-int LTR MaLR -718 862 1 1250 268 44 66 chr4 38864406 38864871 -163463476 - THE1C LTR MaLR 0 375 1 4444 220 21 92 chr4 38864873 38866095 -163462252 + L1M1 LINE L1 3665 4728 -2837 1465 198 3 24 chr4 38866095 38866410 -163461937 + AluJb SINE Alu 1 309 0 4444 220 21 92 chr4 38866410 38866939 -163461408 + L1M1 LINE L1 4728 5293 -2272 27 0 0 0 chr4 38868858 38868885 -163459462 + AT_rich Low_complexity Low_complexity 1 27 0 350 305 47 16 chr4 38868969 38869097 -163459250 + MIR SINE MIR 82 213 -49 1392 210 7 4 chr4 38869137 38869408 -163458939 + AluJo SINE Alu 21 292 -20 437 98 16 0 chr4 38869508 38869569 -163458778 - Alu SINE Alu -255 63 2 1336 153 59 4 chr4 38869570 38869825 -163458522 - L1MA4A LINE L1 -474 5829 5561 5375 203 32 20 chr4 38869826 38870299 -163458048 - L1 LINE L1 -2550 4298 3832 1746 181 0 23 chr4 38870299 38870608 -163457739 - AluJb SINE Alu -10 302 1 5375 203 32 20 chr4 38870608 38872319 -163456028 - L1 LINE L1 -3016 3832 2086 348 365 0 0 chr4 38872401 38872516 -163455831 - MLT1H LTR MaLR -205 344 230 872 136 43 5 chr4 38872517 38872701 -163455646 - L1M2 LINE L1 -4760 2089 1899 3447 248 23 58 chr4 38872884 38873901 -163454446 - L1M2 LINE L1 -4964 1885 905 756 191 30 83 chr4 38874058 38874288 -163454059 + MER20 DNA MER1_type 1 218 -1 368 310 120 0 chr4 38875514 38875672 -163452675 - MIR SINE MIR -22 240 64 2435 110 5 32 chr4 38875751 38876125 -163452222 - THE1B LTR MaLR 0 364 1 438 203 0 98 chr4 38876364 38876507 -163451840 - THE1B LTR MaLR -235 129 1 216 267 0 0 chr4 38876922 38876967 -163451380 + polypyrimidine Low_complexity Low_complexity 4 48 0 246 247 13 26 chr4 38877001 38877078 -163451269 - MLT1H1 LTR MaLR -15 540 465 792 241 96 5 chr4 38877301 38877500 -163450847 - MLT1H LTR MaLR -326 223 7 2494 180 12 96 chr4 38878138 38878685 -163449662 - MLT2B3 LTR ERVL 0 554 -38 186 43 0 0 chr4 38878685 38878708 -163449639 + (TC)n Simple_repeat Simple_repeat 2 24 0 1682 171 16 23 chr4 38878711 38879021 -163449326 - AluJb SINE Alu -4 308 1 2494 180 12 96 chr4 38879021 38879074 -163449273 - MLT2B3 LTR ERVL -497 57 1 880 321 46 27 chr4 38879497 38880123 -163448224 - L1MC4a LINE L1 -1877 6211 5574 258 281 25 25 chr4 38880273 38880394 -163447953 - L1MC4a LINE L1 -1121 5305 5185 4330 260 52 31 chr4 38880410 38881413 -163446934 - L1MCa LINE L1 -2155 4271 3211 2294 96 3 0 chr4 38881413 38881715 -163446632 - AluSc SINE Alu -6 303 1 4330 260 52 31 chr4 38881715 38882516 -163445831 - L1MCa LINE L1 -3215 3211 2428 626 90 0 0 chr4 38883281 38883370 -163444977 - AluSg/x SINE Alu -5 307 219 2623 72 35 0 chr4 38883370 38883716 -163444631 - L1P3 LINE L1 -377 5777 5420 1814 95 38 0 chr4 38883717 38884001 -163444346 + L1PA8 LINE L1 5883 6176 0 2576 223 35 22 chr4 38884014 38884926 -163443421 + L1M3b LINE L1 1109 1996 -4355 933 248 105 50 chr4 38884933 38885296 -163443051 - MSTD LTR MaLR -13 383 1 3477 240 58 12 chr4 38885307 38886792 -163441555 + L1MA9 LINE L1 2893 4461 -3104 1087 242 14 3 chr4 38886792 38887081 -163441266 + L1P LINE L1 5040 5331 -815 275 156 0 0 chr4 38887181 38887226 -163441121 + L1MA9 LINE L1 5227 5271 -2294 1445 188 33 8 chr4 38887226 38887632 -163440715 + L1MA9 LINE L1 6467 6879 -743 644 143 45 38 chr4 38887603 38887736 -163440611 + L1MA9 LINE L1 7208 7341 -390 * 2805 179 75 12 chr4 38887748 38888346 -163440001 + L1MC3 LINE L1 7149 7784 -1 1888 150 69 14 chr4 38888787 38889134 -163439213 - Tigger3(Golem) DNA MER2_type 0 3029 2664 270 321 24 54 chr4 38889230 38889398 -163438949 + L2 LINE L2 2472 2634 -680 253 331 72 33 chr4 38889471 38889652 -163438695 - L2 LINE L2 -212 3060 2873 640 254 104 0 chr4 38890386 38890559 -163437788 + MER20 DNA MER1_type 29 219 0 462 340 64 31 chr4 38891040 38891579 -163436768 + L2 LINE L2 2679 3313 0 312 309 69 17 chr4 38891840 38892015 -163436332 + MIR SINE MIR 79 262 0 761 147 0 0 chr4 38892480 38892596 -163435751 + THE1B LTR MaLR 13 128 -236 10744 114 10 5 chr4 38892633 38894191 -163434156 + THE1C-int LTR MaLR 15 1580 0 1081 163 64 21 chr4 38894191 38894421 -163433926 + THE1C LTR MaLR 1 230 -125 6352 145 15 2 chr4 38894730 38895811 -163432536 - L1P LINE L1 -791 5355 4261 275 395 55 0 chr4 38895896 38896005 -163432342 + L2 LINE L2 3140 3254 -18 29 28 0 0 chr4 38896305 38896341 -163432006 + AT_rich Low_complexity Low_complexity 1 36 0 1577 114 4 17 chr4 38896792 38897029 -163431318 + AluSg/x SINE Alu 66 299 -13 297 152 0 0 chr4 38897654 38897700 -163430647 - MIR SINE MIR -1 261 216 21 0 0 0 chr4 38897740 38897761 -163430586 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr4 38898018 38898049 -163430298 + AT_rich Low_complexity Low_complexity 1 31 0 856 299 57 32 chr4 38898521 38899141 -163429206 - L1M4 LINE L1 -2741 4107 3449 2861 137 14 97 chr4 38899141 38899441 -163428906 - MER1A DNA MER1_type -2173 527 296 1966 109 14 0 chr4 38899441 38899726 -163428621 - AluSp SINE Alu -7 306 18 2861 137 14 97 chr4 38899726 38900000 -163428347 - MER1A DNA MER1_type -2404 296 1 856 299 57 32 chr4 38900000 38900426 -163427921 - L1M4 LINE L1 -3399 3449 3035 24 32 0 0 chr4 38900685 38900716 -163427631 + AT_rich Low_complexity Low_complexity 1 31 0 23 86 0 0 chr4 38900760 38900818 -163427529 + AT_rich Low_complexity Low_complexity 1 58 0 22 0 0 0 chr4 38900866 38900888 -163427459 + AT_rich Low_complexity Low_complexity 1 22 0 300 279 53 42 chr4 38900925 38901115 -163427232 - L1M4 LINE L1 -4270 2579 2388 429 284 22 71 chr4 38901328 38901511 -163426836 + MIR SINE MIR 76 249 -13 1846 184 24 27 chr4 38901816 38902192 -163426155 - THE1C LTR MaLR 0 375 1 689 196 47 12 chr4 38902859 38903513 -163424834 + L1MC2 LINE L1 6137 6767 -997 2413 48 7 0 chr4 38903513 38903808 -163424539 + AluY SINE Alu 1 297 -14 689 196 47 12 chr4 38903808 38903821 -163424526 + L1MC2 LINE L1 6767 7764 0 232 182 0 0 chr4 38904061 38904116 -163424231 + L2 LINE L2 2047 2101 -1213 298 263 218 45 chr4 38904126 38904282 -163424065 + L2 LINE L2 2804 2986 -327 646 264 25 15 chr4 38904302 38904503 -163423844 + L2 LINE L2 3111 3313 0 820 293 88 65 chr4 38904725 38905383 -163422964 + L1ME3A LINE L1 2861 3533 -2613 380 317 138 6 chr4 38905871 38906038 -163422309 - MIR SINE MIR -24 238 50 368 314 78 52 chr4 38906129 38906186 -163422161 + L1ME3A LINE L1 4960 5014 -1132 2135 130 10 0 chr4 38906186 38906487 -163421860 + AluSx SINE Alu 1 304 -8 368 314 78 52 chr4 38906487 38906735 -163421612 + L1ME3A LINE L1 5014 5273 -873 442 291 103 54 chr4 38906744 38907373 -163420974 + L1ME3A LINE L1 5287 5946 -224 1271 239 73 5 chr4 38907724 38908134 -163420213 + MER69B DNA AcHobo 742 1179 -47 26 50 0 0 chr4 38908402 38908442 -163419905 + AT_rich Low_complexity Low_complexity 1 40 0 307 314 139 42 chr4 38908795 38909082 -163419265 - L2 LINE L2 -8 3305 2991 311 366 11 16 chr4 38909302 38909493 -163418854 + L1ME3A LINE L1 5779 5968 -202 523 138 23 0 chr4 38910000 38910087 -163418260 - L1MB2 LINE L1 -28 6143 6055 1892 53 29 0 chr4 38910112 38910356 -163417991 - L1PA4 LINE L1 -3 6152 5902 4845 33 3 0 chr4 38910356 38910932 -163417415 + L1PA4 LINE L1 5305 5882 -273 394 290 173 67 chr4 38912544 38912844 -163415503 + MLT1H LTR MaLR 13 344 -205 25 0 0 0 chr4 38913112 38913137 -163415210 + AT_rich Low_complexity Low_complexity 1 25 0 183 42 0 0 chr4 38913718 38913742 -163414605 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2407 60 0 0 chr4 38913742 38914044 -163414303 - L1PA7 LINE L1 -12 6142 5841 1284 279 65 6 chr4 38915473 38915981 -163412366 + L1MB4 LINE L1 3802 4339 -1807 332 321 75 16 chr4 38916023 38916210 -163412137 + L1MB4 LINE L1 4620 4817 -1329 514 232 75 75 chr4 38916356 38916452 -163411895 + MER33 DNA MER1_type 23 118 -2467 4517 33 2 2 chr4 38916452 38916994 -163411353 + L1PA3 LINE L1 5611 6152 -3 514 232 75 75 chr4 38916994 38917177 -163411170 + MER33 DNA MER1_type 117 302 -22 413 282 44 73 chr4 38917458 38917731 -163410616 + L1MB4 LINE L1 5304 5568 -2240 311 224 12 0 chr4 38917810 38917895 -163410452 + L1MB4 LINE L1 6095 6180 0 236 222 14 0 chr4 38918148 38918220 -163410127 + (TA)n Simple_repeat Simple_repeat 2 74 0 22 35 0 0 chr4 38918426 38918455 -163409892 + AT_rich Low_complexity Low_complexity 1 29 0 208 339 0 0 chr4 38918768 38918830 -163409517 + (CACCAT)n Simple_repeat Simple_repeat 5 66 0 3532 263 71 37 chr4 38919325 38920516 -163407831 + L1MB1 LINE L1 1 1151 -4740 1962 163 30 25 chr4 38920516 38920878 -163407469 - THE1B LTR MaLR 0 364 1 3532 263 71 37 chr4 38920878 38921054 -163407293 + L1MB1 LINE L1 1151 1054 -4837 209 33 33 0 chr4 38921054 38921084 -163407263 + (TTATA)n Simple_repeat Simple_repeat 1 31 0 3532 263 71 37 chr4 38921084 38921416 -163406931 + L1MB1 LINE L1 1053 1373 -4518 2618 102 22 59 chr4 38921418 38921879 -163406468 + MLT2A1 LTR ERVL 1 444 0 7810 86 8 5 chr4 38921879 38922932 -163405415 + HERVL-A1 LTR ERVL 1 1057 -4597 1277 179 0 42 chr4 38923209 38923471 -163404876 + AluJb SINE Alu 62 312 0 5447 206 20 20 chr4 38923496 38924943 -163403404 + L1MB1 LINE L1 3842 5298 -694 225 77 0 58 chr4 38924943 38924995 -163403352 + (TA)n Simple_repeat Simple_repeat 1 49 0 3078 159 45 37 chr4 38925071 38925697 -163402650 + L1MB1 LINE L1 5313 5946 -46 2127 120 0 0 chr4 38925697 38925996 -163402351 + AluSg SINE Alu 1 299 -11 3078 159 45 37 chr4 38925996 38926043 -163402304 + L1MB1 LINE L1 5946 5991 -1 268 278 65 47 chr4 38928049 38928218 -163400129 - MLT1K LTR MaLR -8 580 409 438 321 44 19 chr4 38928327 38928486 -163399861 - MLT1K LTR MaLR -319 269 107 342 304 107 9 chr4 38929146 38929258 -163399089 - L2 LINE L2 -4 3309 3187 3740 85 10 2 chr4 38929820 38930316 -163398031 + LTR3b LTR ERVK 1 500 0 1946 132 50 50 chr4 38930337 38930553 -163397794 - THE1B LTR MaLR 0 364 149 2008 103 7 3 chr4 38930553 38930835 -163397512 + AluY SINE Alu 2 284 -27 297 0 0 0 chr4 38930835 38930868 -163397479 + (CA)n Simple_repeat Simple_repeat 2 34 0 1946 132 50 50 chr4 38930868 38931014 -163397333 - THE1B LTR MaLR -213 151 1 293 266 13 13 chr4 38931700 38931779 -163396568 + MER81 DNA DNA 36 114 0 702 297 60 4 chr4 38931823 38932055 -163396292 + MIR SINE MIR 18 262 0 22 0 0 0 chr4 38932636 38932658 -163395689 + AT_rich Low_complexity Low_complexity 1 22 0 719 228 0 30 chr4 38933252 38933419 -163394928 + MER58B DNA MER1_type 177 338 -3 185 371 0 0 chr4 38935370 38935440 -163392907 + MIR SINE MIR 47 116 -146 292 288 12 0 chr4 38935489 38935569 -163392778 + L2 LINE L2 3232 3312 -1 289 245 51 96 chr4 38935830 38935891 -163392456 + MLT1H LTR MaLR 188 250 -299 4679 91 15 12 chr4 38935891 38936549 -163391798 + PABL_A LTR ERV1 1 660 0 289 245 51 96 chr4 38936549 38936769 -163391578 + MLT1H LTR MaLR 250 549 0 4780 204 30 25 chr4 38936894 38938948 -163389399 + L1MA9 LINE L1 4248 6310 -2 331 314 76 25 chr4 38939078 38939196 -163389151 - L2 LINE L2 0 3313 3190 2460 288 100 24 chr4 38939626 38939898 -163388449 - L2 LINE L2 -5 3308 3058 2205 87 39 0 chr4 38939898 38940184 -163388163 + AluSp SINE Alu 1 297 -16 2460 288 100 24 chr4 38940184 38941174 -163387173 - L2 LINE L2 -255 3058 1938 412 273 56 25 chr4 38941174 38941335 -163387012 - L2 LINE L2 -1587 1727 1562 22 70 0 0 chr4 38942988 38943031 -163385316 + AT_rich Low_complexity Low_complexity 1 43 0 888 258 35 62 chr4 38943089 38943564 -163384783 - PABL_B LTR ERV1 0 667 53 261 340 10 10 chr4 38944463 38944566 -163383781 + MER5B DNA MER1_type 2 104 -74 211 312 81 49 chr4 38944811 38945058 -163383289 - L2 LINE L2 -1812 1502 1248 956 251 115 75 chr4 38945181 38945702 -163382645 + MLT1F LTR MaLR 1 542 0 2215 78 13 3 chr4 38945820 38946127 -163382220 + AluY SINE Alu 1 310 -1 324 0 0 0 chr4 38946974 38947010 -163381337 + (CA)n Simple_repeat Simple_repeat 1 36 0 215 286 0 29 chr4 38947651 38947721 -163380626 + (CATATA)n Simple_repeat Simple_repeat 1 68 0 194 128 26 0 chr4 38947727 38947766 -163380581 + (CA)n Simple_repeat Simple_repeat 1 40 0 293 407 62 12 chr4 38948513 38948771 -163379576 + L2 LINE L2 2553 2823 -491 2310 145 46 5 chr4 38949325 38949739 -163378608 + MER39B LTR ERV1 1 431 -222 929 172 24 0 chr4 38949865 38950034 -163378313 + MER4A LTR ERV1 491 663 -1 1177 132 14 27 chr4 38950040 38950137 -163378210 + MER39B LTR ERV1 433 530 -123 3143 151 28 77 chr4 38950137 38950864 -163377483 - LTR8 LTR ERV1 0 691 1 1177 132 14 27 chr4 38950864 38950986 -163377361 + MER39B LTR ERV1 530 649 -4 2183 107 0 41 chr4 38952036 38952355 -163375992 + AluSx SINE Alu 1 306 -6 25 0 0 0 chr4 38952606 38952631 -163375716 + AT_rich Low_complexity Low_complexity 1 25 0 794 116 0 52 chr4 38952634 38952789 -163375558 - L1MA7 LINE L1 -7 6284 6138 21 0 0 0 chr4 38954312 38954333 -163374014 + AT_rich Low_complexity Low_complexity 1 21 0 247 333 43 0 chr4 38954919 38955012 -163373335 - L2 LINE L2 -1 3271 3175 361 321 37 19 chr4 38955554 38955716 -163372631 - L2 LINE L2 -466 2848 2684 1590 221 37 55 chr4 38957478 38957990 -163370357 + MLT1D LTR MaLR 1 503 -2 387 0 0 0 chr4 38959066 38959109 -163369238 + (CA)n Simple_repeat Simple_repeat 2 44 0 1831 188 97 13 chr4 38959239 38959632 -163368715 - MSTB LTR MaLR 0 426 1 21 0 0 0 chr4 38959755 38959776 -163368571 + AT_rich Low_complexity Low_complexity 1 21 0 26060 115 6 11 chr4 38960208 38964398 -163363949 + L1P LINE L1 11 4181 -1965 232 267 11 22 chr4 38964995 38965085 -163363262 + T-rich Low_complexity Low_complexity 1 89 0 22 0 0 0 chr4 38966601 38966623 -163361724 + AT_rich Low_complexity Low_complexity 1 22 0 220 270 0 36 chr4 38967922 38968033 -163360314 + (TTTG)n Simple_repeat Simple_repeat 2 108 0 331 269 55 28 chr4 38970152 38970334 -163358013 - L1M2 LINE L1 -4018 2831 2645 22 0 0 0 chr4 38971895 38971917 -163356430 + GC_rich Low_complexity Low_complexity 1 22 0 607 189 14 14 chr4 38975660 38975803 -163352544 + L1MA10 LINE L1 6179 6321 -13 378 282 145 22 chr4 38975838 38976065 -163352282 + L1ME4a LINE L1 5710 5964 -157 1253 202 81 42 chr4 38976186 38976567 -163351780 + L1MC3 LINE L1 6688 7083 -702 2215 144 14 5 chr4 38976587 38977023 -163351324 + L1P4 LINE L1 5208 5646 -520 22 35 0 0 chr4 38979736 38979765 -163348582 + GC_rich Low_complexity Low_complexity 1 29 0 3228 138 9 29 chr4 38980045 38980604 -163347743 + L1PB1 LINE L1 5591 6138 -13 1792 206 30 10 chr4 38980625 38981125 -163347222 + L1 LINE L1 3047 3556 -2590 8506 67 5 4 chr4 38981225 38982988 -163345359 + L1PA6 LINE L1 4170 5931 -223 222 265 24 12 chr4 38984574 38984657 -163343690 + CT-rich Low_complexity Low_complexity 1 84 0 351 0 0 0 chr4 38984768 38984807 -163343540 + (TG)n Simple_repeat Simple_repeat 1 39 0 700 263 52 5 chr4 38984989 38985183 -163343164 + MIR SINE MIR 60 262 0 299 306 0 12 chr4 38986440 38986525 -163341822 + CT-rich Low_complexity Low_complexity 3 86 0 358 349 53 13 chr4 38986574 38986726 -163341621 + MIR SINE MIR 93 250 -12 285 194 16 16 chr4 38986745 38986807 -163341540 - MER67D LTR ERV1 0 514 453 1392 211 12 56 chr4 38986870 38987211 -163341136 - MER67D LTR ERV1 -188 326 1 2608 166 29 73 chr4 38988352 38988983 -163339364 - MER6A DNA MER2_type 0 605 3 22 56 0 0 chr4 38990633 38990669 -163337678 + AT_rich Low_complexity Low_complexity 1 36 0 712 107 0 0 chr4 38991133 38991236 -163337111 - L1PA15 LINE L1 -6 6159 6057 2266 145 28 46 chr4 38991247 38991475 -163336872 - MSTA LTR MaLR 0 428 210 2342 81 0 0 chr4 38991475 38991773 -163336574 - AluY SINE Alu -13 298 1 2266 145 28 46 chr4 38991773 38991978 -163336369 - MSTA LTR MaLR -218 210 3 230 91 55 36 chr4 38992215 38992270 -163336077 + (TATATG)n Simple_repeat Simple_repeat 5 60 0 311 147 0 13 chr4 38992719 38992794 -163335553 + (TC)n Simple_repeat Simple_repeat 2 75 0 234 0 0 0 chr4 38993129 38993155 -163335192 + (T)n Simple_repeat Simple_repeat 1 26 0 984 297 88 31 chr4 38993357 38994000 -163334347 - L2 LINE L2 -2 3311 2633 1005 221 18 9 chr4 38994641 38994863 -163333484 - MER58A DNA MER1_type 0 224 1 211 231 359 0 chr4 38994901 38994979 -163333368 + MER5A DNA MER1_type 9 114 -75 597 209 7 36 chr4 38995174 38995313 -163333034 + Charlie8 DNA MER1_type 94 228 -2189 1759 156 55 30 chr4 38996959 38997325 -163331022 - THE1C LTR MaLR 0 375 1 2196 116 0 3 chr4 38997350 38997653 -163330694 - AluSx SINE Alu -10 302 1 28 0 0 0 chr4 38998909 38998937 -163329410 + AT_rich Low_complexity Low_complexity 1 28 0 2022 212 77 27 chr4 38999513 39000036 -163328311 - MLT1H LTR MaLR 0 549 1 2974 197 46 18 chr4 39000248 39000970 -163327377 - L1ME1 LINE L1 -165 6070 5329 810 287 89 27 chr4 39000984 39001397 -163326950 + LTR40a LTR ERVL 5 457 -5 356 192 125 42 chr4 39001589 39001709 -163326638 - L1ME1 LINE L1 -3873 2523 2394 207 0 0 0 chr4 39001711 39001734 -163326613 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1350 201 4 36 chr4 39001745 39002019 -163326328 - AluJo SINE Alu -36 276 12 3630 269 63 35 chr4 39002037 39003819 -163324528 - L1ME1 LINE L1 -4008 2388 557 429 284 81 55 chr4 39004098 39004334 -163324013 - L1ME1 LINE L1 -5956 440 199 1411 207 27 27 chr4 39004334 39004629 -163323718 - AluJo SINE Alu -7 305 11 463 277 31 6 chr4 39004645 39004804 -163323543 - L1ME1 LINE L1 -6192 204 42 12038 221 29 16 chr4 39005346 39009671 -163318676 - L1PA16 LINE L1 -8 6158 1789 26 30 0 0 chr4 39009778 39009811 -163318536 + AT_rich Low_complexity Low_complexity 1 33 0 1840 158 0 7 chr4 39010007 39010292 -163318055 + AluSx SINE Alu 1 283 -29 268 264 40 16 chr4 39010629 39010754 -163317593 - L1ME4a LINE L1 -21 6100 5973 1230 279 78 25 chr4 39011549 39012065 -163316282 - MLT1H LTR MaLR 0 549 7 2541 84 14 0 chr4 39012200 39012545 -163315802 - HERVL-A2 LTR ERVL -5304 350 1 394 91 0 0 chr4 39012545 39012600 -163315747 - MLT2A2 LTR ERVL 0 453 399 315 190 0 100 chr4 39012631 39012731 -163315616 - L1MC4 LINE L1 -1339 6703 6614 348 103 0 0 chr4 39012739 39012797 -163315550 + (TA)n Simple_repeat Simple_repeat 2 59 0 1490 62 54 120 chr4 39012797 39013073 -163315274 - MLT2A2 LTR ERVL -195 258 1 789 209 37 28 chr4 39013073 39013288 -163315059 + THE1C LTR MaLR 107 323 -52 764 185 0 15 chr4 39013521 39013656 -163314691 + FLAM_C SINE Alu 1 133 0 326 217 103 98 chr4 39013920 39014307 -163314040 + L1ME4a LINE L1 5693 6081 -40 1638 112 13 70 chr4 39014343 39014655 -163313692 - L1MA6 LINE L1 0 6300 6007 2312 193 29 23 chr4 39014761 39015501 -163312846 + L1M3 LINE L1 5004 5745 -438 1721 139 102 24 chr4 39015501 39015833 -163312514 + MSTA LTR MaLR 1 358 -70 2462 243 42 9 chr4 39015934 39016903 -163311444 + L1M2 LINE L1 2540 3489 -4076 2097 111 3 7 chr4 39017005 39017293 -163311054 + AluSc SINE Alu 1 287 -22 945 268 43 31 chr4 39017403 39017754 -163310593 + HAL1 LINE L1 1347 1701 -806 2117 136 0 0 chr4 39018238 39018540 -163309807 - AluJb SINE Alu -10 302 1 200 213 21 0 chr4 39019233 39019280 -163309067 + GA-rich Low_complexity Low_complexity 2 49 0 690 262 87 34 chr4 39019319 39019573 -163308774 + MIR SINE MIR 3 261 -1 1980 188 3 6 chr4 39019754 39020100 -163308247 + MLT1A1 LTR MaLR 21 365 0 232 262 33 0 chr4 39020258 39020319 -163308028 + LTR16A LTR ERVL 383 445 -5 4691 81 11 0 chr4 39021484 39022123 -163306224 + L1PA13 LINE L1 5517 6162 -1 23 68 0 0 chr4 39024172 39024216 -163304131 + AT_rich Low_complexity Low_complexity 1 44 0 2013 83 12 0 chr4 39024723 39024975 -163303372 - AluSx SINE Alu -54 258 4 3578 129 81 24 chr4 39024978 39025985 -163302362 - L1MA5A LINE L1 -345 5952 4897 24 53 0 0 chr4 39027043 39027081 -163301266 + AT_rich Low_complexity Low_complexity 1 38 0 503 265 8 43 chr4 39027933 39028078 -163300269 + MIR SINE MIR 20 158 -61 300 53 0 0 chr4 39028671 39028709 -163299638 + (TC)n Simple_repeat Simple_repeat 2 39 0 383 0 21 0 chr4 39028899 39028946 -163299401 + (GA)n Simple_repeat Simple_repeat 1 48 0 387 307 34 39 chr4 39029061 39029266 -163299081 - MIR3 SINE MIR -2 206 3 5259 118 14 37 chr4 39029394 39030251 -163298096 + MER4D LTR ERV1 58 894 -9 402 79 11 0 chr4 39030559 39030625 -163297722 - L1M4 LINE L1 -638 5525 5456 24 0 0 0 chr4 39031056 39031080 -163297267 + AT_rich Low_complexity Low_complexity 1 24 0 313 281 73 21 chr4 39031821 39031917 -163296430 + L2 LINE L2 3208 3308 -5 298 227 21 41 chr4 39033080 39033177 -163295170 - MIR SINE MIR -46 216 122 219 151 27 5 chr4 39033881 39033958 -163294389 + L2 LINE L2 3191 3308 -5 366 345 52 11 chr4 39033972 39034146 -163294201 - MIR SINE MIR -61 201 21 193 80 0 0 chr4 39035502 39035527 -163292820 - L2 LINE L2 -20 3293 3269 497 296 19 51 chr4 39036052 39036268 -163292079 + MIR SINE MIR 2 210 -52 242 284 27 14 chr4 39036963 39037037 -163291310 - LTR67 LTR ERVL -383 174 100 267 151 159 103 chr4 39037178 39037304 -163291043 - MLT1F LTR MaLR 0 542 410 1925 159 207 19 chr4 39037829 39038369 -163289978 + LTR8A LTR ERV1 1 642 -85 184 179 0 36 chr4 39039639 39039695 -163288652 + CT-rich Low_complexity Low_complexity 5 58 0 207 0 0 0 chr4 39039855 39039878 -163288469 + (A)n Simple_repeat Simple_repeat 1 23 0 673 257 50 30 chr4 39040388 39040823 -163287524 - MLT1H LTR MaLR 0 549 13 2006 169 32 26 chr4 39041127 39041158 -163287189 + L1 LINE L1 3930 3959 -2187 2104 127 0 17 chr4 39041158 39041457 -163286890 + AluSx SINE Alu 1 294 -18 2006 169 32 26 chr4 39041457 39041887 -163286460 + L1 LINE L1 3959 4394 -1752 2090 127 14 0 chr4 39042098 39042389 -163285958 - AluSx SINE Alu -17 295 1 252 225 58 17 chr4 39042520 39042640 -163285707 + (TA)n Simple_repeat Simple_repeat 2 126 0 214 321 0 0 chr4 39042899 39042955 -163285392 + MIR SINE MIR 55 110 -152 259 253 0 0 chr4 39044015 39044090 -163284257 - MER103 DNA DNA -81 85 11 2100 124 0 0 chr4 39044243 39044557 -163283790 - AluSx SINE Alu 0 314 1 762 305 60 0 chr4 39044841 39045074 -163283273 - MIR SINE MIR -15 247 1 563 279 61 6 chr4 39045081 39045246 -163283101 - L2 LINE L2 -241 3072 2899 201 133 0 0 chr4 39046063 39046093 -163282254 + (CATA)n Simple_repeat Simple_repeat 3 32 0 308 314 146 22 chr4 39046190 39046327 -163282020 - L2 LINE L2 0 3272 3119 1541 205 30 19 chr4 39047268 39047629 -163280718 + MLT1A1 LTR MaLR 1 365 0 244 244 47 35 chr4 39047832 39047918 -163280429 - MLT1K LTR MaLR -320 268 182 1686 182 11 0 chr4 39049187 39049473 -163278874 + AluJo SINE Alu 1 289 -23 209 215 9 56 chr4 39050260 39050367 -163277980 + (TTTAA)n Simple_repeat Simple_repeat 4 105 0 571 286 98 10 chr4 39050576 39050779 -163277568 + MIR SINE MIR 29 249 -13 319 37 19 37 chr4 39050825 39050879 -163277468 + (TCTA)n Simple_repeat Simple_repeat 1 53 0 195 42 0 0 chr4 39052452 39052476 -163275871 + (CA)n Simple_repeat Simple_repeat 2 25 0 216 0 0 0 chr4 39052685 39052709 -163275638 + (A)n Simple_repeat Simple_repeat 1 24 0 1941 145 13 32 chr4 39053298 39053392 -163274955 + L1MB1 LINE L1 5800 5894 -274 692 163 32 8 chr4 39053392 39053515 -163274832 + FLAM_C SINE Alu 1 126 -7 1941 145 13 32 chr4 39053515 39053793 -163274554 + L1MB1 LINE L1 5894 6165 -3 260 373 45 70 chr4 39054067 39054311 -163274036 - L2 LINE L2 -2 3270 3033 386 259 76 70 chr4 39054812 39054997 -163273350 + MER5A DNA MER1_type 1 186 -3 576 229 21 42 chr4 39055007 39055151 -163273196 + MER5B DNA MER1_type 36 176 -2 409 329 161 0 chr4 39055161 39055316 -163273031 - MER5A DNA MER1_type 0 189 10 205 162 0 0 chr4 39055792 39055829 -163272518 + (CA)n Simple_repeat Simple_repeat 1 37 0 1031 180 19 0 chr4 39055837 39056043 -163272304 + MLT2C2 LTR ERVL 1 210 -254 14303 83 2 1 chr4 39056144 39058225 -163270122 - L1P LINE L1 -1385 4761 2679 243 0 0 0 chr4 39059430 39059457 -163268890 + (T)n Simple_repeat Simple_repeat 1 27 0 195 42 0 0 chr4 39059664 39059688 -163268659 + (TG)n Simple_repeat Simple_repeat 2 25 0 1344 103 33 12 chr4 39060185 39060428 -163267919 - L1 LINE L1 -1338 4808 4561 216 278 28 28 chr4 39060974 39061082 -163267265 + GA-rich Low_complexity Low_complexity 1 108 0 630 245 20 7 chr4 39062247 39062394 -163265953 + MER58B DNA MER1_type 193 341 0 199 310 69 0 chr4 39062403 39062490 -163265857 - L2 LINE L2 -733 2581 2489 185 180 20 0 chr4 39062555 39062605 -163265742 + (TG)n Simple_repeat Simple_repeat 1 51 0 1992 157 16 0 chr4 39065015 39065320 -163263027 + AluSx SINE Alu 1 310 -2 665 211 0 0 chr4 39067084 39067207 -163261140 - FLAM_C SINE Alu -18 125 3 1000 261 32 19 chr4 39068085 39068399 -163259948 - LTR16A LTR ERVL 0 450 133 405 39 0 0 chr4 39068504 39068555 -163259792 + (TG)n Simple_repeat Simple_repeat 1 51 0 692 214 48 62 chr4 39068571 39068880 -163259467 + L1MC5 LINE L1 7634 7938 -23 1684 167 30 3 chr4 39069438 39069774 -163258573 + L1MA5 LINE L1 5948 6292 -8 382 164 14 0 chr4 39069879 39069952 -163258395 + L1MB7 LINE L1 6055 6128 -56 307 375 69 17 chr4 39070773 39071005 -163257342 + MIR SINE MIR 2 245 -17 361 268 131 16 chr4 39071073 39071256 -163257091 + L1ME LINE L1 5574 5777 -344 1058 150 82 0 chr4 39071350 39071644 -163256703 + L1MB2 LINE L1 5163 5474 -709 279 0 0 0 chr4 39071646 39071677 -163256670 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 680 188 8 23 chr4 39071681 39071814 -163256533 + FLAM_C SINE Alu 1 131 -12 1842 168 9 0 chr4 39071824 39072163 -163256184 + L1MB2 LINE L1 5486 5827 -344 2542 38 0 0 chr4 39072164 39072457 -163255890 + AluY SINE Alu 1 293 -18 1067 95 0 7 chr4 39072557 39072704 -163255643 + AluY SINE Alu 153 298 -13 7322 149 44 18 chr4 39072949 39074921 -163253426 - L1MA8 LINE L1 -12 6279 4239 192 40 0 0 chr4 39074921 39074946 -163253401 + (TA)n Simple_repeat Simple_repeat 1 25 0 7322 149 44 18 chr4 39074946 39075431 -163252916 - L1MA8 LINE L1 -2052 4239 3768 236 189 19 0 chr4 39077994 39078047 -163250300 + (CGGG)n Simple_repeat Simple_repeat 2 55 0 428 303 36 30 chr4 39078156 39078321 -163250026 - MIR SINE MIR -88 174 9 1058 269 49 59 chr4 39079941 39080432 -163247915 + L2 LINE L2 2815 3300 -13 272 329 19 25 chr4 39082012 39082173 -163246174 - L1M3c LINE L1 -5981 160 1 225 125 0 42 chr4 39082823 39082871 -163245476 + L1MC4 LINE L1 6658 6703 -1339 647 289 57 30 chr4 39082890 39083070 -163245277 - L1MC4a LINE L1 -813 5333 5682 2385 74 0 13 chr4 39083070 39083380 -163244967 - AluY SINE Alu -5 306 1 647 289 57 30 chr4 39083380 39084079 -163244268 - L1MC4a LINE L1 -463 5683 5004 230 292 0 0 chr4 39084079 39084144 -163244203 + MIR SINE MIR 129 193 -69 356 278 22 0 chr4 39084861 39084951 -163243396 + MER5A DNA MER1_type 9 100 -89 214 283 53 80 chr4 39085249 39085362 -163242985 + L2 LINE L2 3204 3313 0 987 153 33 0 chr4 39085603 39085786 -163242561 - L1MB3 LINE L1 0 6183 5995 5671 58 25 37 chr4 39085786 39087135 -163241212 + SVA Other Other 1 1166 -220 195 42 0 0 chr4 39087237 39087261 -163241086 + (CA)n Simple_repeat Simple_repeat 1 24 0 1764 145 9 69 chr4 39088614 39088946 -163239401 + AluSx SINE Alu 1 312 0 964 192 145 41 chr4 39089776 39090141 -163238206 + LTR37A LTR ERV1 1 403 -23 2393 109 0 0 chr4 39090141 39090453 -163237894 - AluSx SINE Alu 0 312 1 2279 117 0 0 chr4 39090464 39090773 -163237574 - AluSx SINE Alu -3 309 1 343 360 18 6 chr4 39091818 39091982 -163236365 + LTR67 LTR ERVL 45 210 -347 2204 110 0 10 chr4 39092045 39092345 -163236002 + AluSq SINE Alu 2 298 -15 733 215 135 33 chr4 39092392 39092500 -163235847 - HsTC2 DNA Tc2 0 1898 1802 1856 168 9 25 chr4 39092500 39092816 -163235531 - AluJo SINE Alu -1 311 1 733 215 135 33 chr4 39092816 39093106 -163235241 - HsTC2 DNA Tc2 -96 1802 1282 290 219 0 31 chr4 39093105 39093169 -163235178 - HsTC2 DNA Tc2 -1757 141 80 * 904 245 103 57 chr4 39093860 39094402 -163233945 - MLT1L LTR MaLR -7 608 42 4357 99 3 2 chr4 39095052 39095680 -163232667 - L1PB2 LINE L1 0 6151 5523 250 331 95 34 chr4 39095846 39095994 -163232353 - MIR3 SINE MIR -50 158 2 412 270 98 43 chr4 39097618 39097781 -163230566 - L2 LINE L2 0 3313 3142 255 253 0 72 chr4 39097870 39097953 -163230394 + L2 LINE L2 3196 3272 0 963 216 9 5 chr4 39100935 39101157 -163227190 + L1PA16 LINE L1 5944 6166 0 445 337 83 0 chr4 39101274 39101455 -163226892 + LTR33 LTR ERVL 2 197 -324 370 225 99 28 chr4 39101514 39101696 -163226651 + LTR33 LTR ERVL 327 521 0 285 357 32 22 chr4 39101742 39101927 -163226420 - MIR SINE MIR -54 208 19 310 311 161 22 chr4 39103233 39103413 -163224934 + L2 LINE L2 2428 2632 -682 1719 192 11 50 chr4 39103421 39103801 -163224546 - MLT1A1 LTR MaLR 0 365 1 3245 153 20 77 chr4 39104064 39104796 -163223551 - LTR8 LTR ERV1 0 691 1 1176 235 73 55 chr4 39104941 39105417 -163222930 + MLT1H LTR MaLR 62 546 -3 204 300 100 0 chr4 39105461 39105521 -163222826 - L2 LINE L2 -71 3201 3136 351 265 87 94 chr4 39105569 39105961 -163222386 - L2 LINE L2 -754 2560 2172 192 77 0 0 chr4 39107978 39108004 -163220343 + (T)n Simple_repeat Simple_repeat 1 26 0 198 287 57 82 chr4 39108034 39108156 -163220191 - L2 LINE L2 -15 3257 3139 271 371 48 30 chr4 39109842 39110009 -163218338 + L2 LINE L2 3041 3210 -62 413 218 129 0 chr4 39110044 39110145 -163218202 + MER45 DNA AcHobo 2 115 -1466 256 235 0 0 chr4 39110276 39110327 -163218020 + MER45 DNA AcHobo 1531 1581 0 501 265 74 6 chr4 39110391 39110553 -163217794 + MIR SINE MIR 51 223 -39 1222 197 46 21 chr4 39110568 39110893 -163217454 + L1MA7 LINE L1 5866 6198 -93 272 242 16 0 chr4 39111228 39111290 -163217057 + (TCTG)n Simple_repeat Simple_repeat 4 66 0 417 54 0 0 chr4 39111585 39111641 -163216706 + (GA)n Simple_repeat Simple_repeat 1 56 0 1004 211 57 8 chr4 39112014 39112279 -163216068 + MER33 DNA MER1_type 1 278 -46 797 61 18 0 chr4 39112380 39112494 -163215853 + L1P1 LINE L1 1 116 -6030 * 33752 35 0 0 chr4 39112476 39116901 -163211446 + L1P1 LINE L1 1094 5517 -638 478 306 46 65 chr4 39117046 39117369 -163210978 + L2 LINE L2 2997 3313 0 183 333 25 25 chr4 39117401 39117482 -163210865 - MER5A DNA MER1_type -26 163 83 284 328 15 45 chr4 39117621 39117758 -163210589 + MER5B DNA MER1_type 36 179 -10 561 321 100 6 chr4 39117899 39118238 -163210109 - MLT1L LTR MaLR -26 589 219 254 28 0 28 chr4 39118591 39118627 -163209720 + (TG)n Simple_repeat Simple_repeat 2 36 0 2133 127 3 22 chr4 39118880 39119196 -163209151 + AluSx SINE Alu 1 310 -2 1681 138 190 11 chr4 39119337 39119700 -163208647 + MSTA LTR MaLR 1 428 0 3577 89 47 0 chr4 39121949 39122478 -163205869 - MER41A LTR ERV1 0 554 1 332 359 87 21 chr4 39122892 39123179 -163205168 + L2 LINE L2 2656 2961 -353 186 322 67 94 chr4 39123274 39123454 -163204893 + L2 LINE L2 3090 3264 -8 23 0 0 0 chr4 39123507 39123530 -163204817 + AT_rich Low_complexity Low_complexity 1 23 0 316 93 0 173 chr4 39123557 39123632 -163204715 - Charlie5 DNA MER1_type 0 2623 2562 372 199 286 19 chr4 39123711 39123917 -163204430 - L1MEd LINE L1 -5270 849 589 498 271 61 124 chr4 39125052 39125388 -163202959 + HAL1 LINE L1 1113 1414 -1093 3617 108 15 0 chr4 39125388 39125918 -163202429 + L1PA13 LINE L1 5625 6162 -1 498 271 61 124 chr4 39125918 39126039 -163202308 + HAL1 LINE L1 1414 1541 -966 32 0 0 0 chr4 39126099 39126131 -163202216 + AT_rich Low_complexity Low_complexity 1 32 0 250 125 167 0 chr4 39126131 39126203 -163202144 - L1MA7 LINE L1 -1 6290 6207 3972 26 0 0 chr4 39126543 39127002 -163201345 + L1PA3 LINE L1 5694 6152 -3 1446 334 111 25 chr4 39127103 39128451 -163199896 + L2 LINE L2 1843 3312 -1 204 294 24 24 chr4 39128632 39128717 -163199630 + MIR SINE MIR 157 241 -21 2649 218 138 34 chr4 39130098 39130241 -163198106 - L1MC4a LINE L1 -82 7726 7599 2195 111 7 13 chr4 39130241 39130548 -163197799 - AluSp SINE Alu -8 305 1 2649 218 138 34 chr4 39130548 39130710 -163197637 - L1MC4a LINE L1 -209 7599 7455 1833 141 5 83 chr4 39130710 39131085 -163197262 + MER7A DNA MER2_type 2 345 -1 2649 218 138 34 chr4 39131085 39131796 -163196551 - L1MC4a LINE L1 -353 7455 6604 487 230 60 0 chr4 39132014 39132114 -163196233 + MER5A DNA MER1_type 4 109 -80 410 104 52 13 chr4 39132520 39132597 -163195750 - MADE1 DNA Mariner 0 80 1 21 0 0 0 chr4 39132687 39132708 -163195639 + AT_rich Low_complexity Low_complexity 1 21 0 2560 106 14 0 chr4 39132798 39133157 -163195190 + THE1B LTR MaLR 1 364 0 9455 137 36 17 chr4 39133158 39134707 -163193640 + THE1B-int LTR MaLR 2 1579 -1 2596 115 3 6 chr4 39134708 39135073 -163193274 + THE1B LTR MaLR 1 364 0 275 269 30 0 chr4 39135084 39135151 -163193196 - MIR SINE MIR -96 166 98 370 280 108 3 chr4 39135270 39135432 -163192915 + MIR SINE MIR 16 187 -73 379 229 144 8 chr4 39136398 39136516 -163191831 + MIR SINE MIR 33 166 -96 634 257 117 31 chr4 39136527 39136784 -163191563 + L2 LINE L2 3017 3295 -18 33 0 0 0 chr4 39136813 39136846 -163191501 + AT_rich Low_complexity Low_complexity 1 33 0 563 346 31 16 chr4 39137219 39137476 -163190871 - MIR SINE MIR 0 262 2 387 310 82 12 chr4 39137864 39138035 -163190312 - MIR SINE MIR -74 188 6 2239 107 0 10 chr4 39138321 39138620 -163189727 + AluY SINE Alu 1 296 -15 1092 235 94 11 chr4 39138670 39139071 -163189276 - MER57A LTR ERV1 -2 401 3 215 200 0 29 chr4 39139718 39139788 -163188559 + (TCTA)n Simple_repeat Simple_repeat 3 70 0 243 185 25 99 chr4 39142619 39142700 -163185647 - MER106A DNA MER1_type 0 236 162 212 320 30 40 chr4 39142701 39142801 -163185546 + MER5B DNA MER1_type 79 177 -1 767 247 28 0 chr4 39142812 39142994 -163185353 - MER5A DNA MER1_type 0 189 3 465 304 143 19 chr4 39143014 39143175 -163185172 + MER5A DNA MER1_type 9 189 0 22 0 0 0 chr4 39143318 39143340 -163185007 + AT_rich Low_complexity Low_complexity 1 22 0 294 274 0 27 chr4 39144000 39144073 -163184274 + MER96 DNA MER1_type? 104 174 -1 1127 291 106 27 chr4 39144080 39144561 -163183786 - MLT1E LTR MaLR 0 593 75 2385 99 3 0 chr4 39144651 39144963 -163183384 - AluSq SINE Alu 0 313 1 303 191 0 0 chr4 39144968 39145036 -163183311 + CT-rich Low_complexity Low_complexity 2 69 0 450 176 0 44 chr4 39145184 39145275 -163183072 + MER90 LTR ERV1 3 89 -525 565 167 79 26 chr4 39145282 39145396 -163182951 + THE1C LTR MaLR 1 120 -255 319 81 0 32 chr4 39145410 39145472 -163182875 + (TA)n Simple_repeat Simple_repeat 2 61 0 260 149 0 54 chr4 39145484 39145558 -163182789 + (TA)n Simple_repeat Simple_repeat 2 71 0 414 195 0 0 chr4 39145566 39145653 -163182694 + (TATG)n Simple_repeat Simple_repeat 2 88 0 2725 101 23 8 chr4 39145655 39146051 -163182296 - MLT2A1 LTR ERVL -40 404 3 41713 88 17 2 chr4 39146051 39151621 -163176726 - HERVL-A1 LTR ERVL 0 5654 1 394 91 0 0 chr4 39151621 39151676 -163176671 - MLT2A1 LTR ERVL 0 453 399 315 190 0 100 chr4 39151707 39151807 -163176540 - L1MC4 LINE L1 -1339 6703 6614 348 103 0 0 chr4 39151815 39151873 -163176474 + (TA)n Simple_repeat Simple_repeat 2 59 0 1490 62 54 120 chr4 39151873 39152149 -163176198 - MLT2A2 LTR ERVL -195 258 1 1329 178 30 11 chr4 39152149 39152413 -163175934 + THE1C LTR MaLR 107 375 0 1193 261 43 10 chr4 39152415 39152864 -163175483 + MER90 LTR ERV1 106 610 -4 1967 125 0 20 chr4 39153418 39153721 -163174626 + AluSx SINE Alu 9 305 -7 267 103 0 0 chr4 39153982 39154021 -163174326 + (TA)n Simple_repeat Simple_repeat 2 40 0 951 129 29 0 chr4 39154348 39154487 -163173860 - MER30B DNA MER1_type -1 229 87 313 259 157 42 chr4 39156217 39156503 -163171844 - L1ME4a LINE L1 -38 6083 5765 212 338 0 0 chr4 39156508 39156582 -163171765 + (TAA)n Simple_repeat Simple_repeat 1 74 0 271 316 58 22 chr4 39156624 39156763 -163171584 - MIR SINE MIR -23 239 96 341 328 18 35 chr4 39156764 39156935 -163171412 - MER5A DNA MER1_type -11 178 11 390 313 14 14 chr4 39156785 39156932 -163171415 + MER5B DNA MER1_type 31 177 -1 856 264 33 7 chr4 39157073 39157346 -163171001 - MER93a LTR ERV1 -3 399 120 2265 105 0 0 chr4 39157487 39157783 -163170564 - AluSg SINE Alu -14 296 1 503 16 16 0 chr4 39158013 39158077 -163170270 + (TG)n Simple_repeat Simple_repeat 2 66 0 253 325 12 0 chr4 39158748 39158831 -163169516 + MIR3 SINE MIR 124 207 -1 22 35 0 0 chr4 39159008 39159037 -163169310 + AT_rich Low_complexity Low_complexity 1 29 0 2126 102 10 10 chr4 39159407 39159712 -163168635 - AluSx SINE Alu -2 310 6 248 311 14 0 chr4 39160235 39160309 -163168038 + L1MEd LINE L1 1362 1436 -5495 369 0 0 0 chr4 39160336 39160377 -163167970 + (CA)n Simple_repeat Simple_repeat 2 42 0 312 70 0 0 chr4 39160424 39160467 -163167880 + (CATA)n Simple_repeat Simple_repeat 2 44 0 1263 141 52 19 chr4 39160540 39160810 -163167537 + L1MA5A LINE L1 6018 6296 -1 257 248 47 69 chr4 39160879 39161180 -163167167 + L1MEd LINE L1 1391 1872 -4967 620 289 98 68 chr4 39161204 39161779 -163166568 - L2 LINE L2 -73 3240 2661 23 33 0 0 chr4 39162193 39162223 -163166124 + AT_rich Low_complexity Low_complexity 1 30 0 417 280 130 34 chr4 39162400 39162639 -163165708 - L1ME3A LINE L1 -215 5947 5686 400 284 69 21 chr4 39162664 39162970 -163165377 - L1ME3A LINE L1 -580 5582 5288 234 180 0 0 chr4 39162984 39163061 -163165286 + A-rich Low_complexity Low_complexity 1 77 0 2198 138 31 14 chr4 39163179 39163533 -163164814 - THE1B LTR MaLR -4 360 1 234 321 58 11 chr4 39163567 39163757 -163164590 - L1ME3A LINE L1 -1039 5107 4909 235 262 36 12 chr4 39163923 39164007 -163164340 - L1ME3A LINE L1 -1546 4600 4515 447 291 54 41 chr4 39164150 39164445 -163163902 - L1ME3A LINE L1 -1983 4163 3865 2233 102 0 0 chr4 39164512 39164807 -163163540 + AluY SINE Alu 1 295 -16 22 0 0 0 chr4 39164808 39164830 -163163517 + AT_rich Low_complexity Low_complexity 1 22 0 188 292 62 0 chr4 39164872 39164937 -163163410 - MIR SINE MIR -70 192 124 484 274 132 15 chr4 39166249 39166453 -163161894 + MIR SINE MIR 26 253 -9 25 0 0 0 chr4 39166494 39166519 -163161828 + AT_rich Low_complexity Low_complexity 1 25 0 183 162 0 0 chr4 39166551 39166588 -163161759 + T-rich Low_complexity Low_complexity 1 37 0 1944 158 0 0 chr4 39166599 39166902 -163161445 - AluSx SINE Alu -9 303 1 212 317 106 16 chr4 39166917 39167040 -163161307 + MIR SINE MIR 129 262 0 1757 129 63 30 chr4 39167064 39167366 -163160981 + AluJb SINE Alu 1 312 0 297 0 0 0 chr4 39167371 39167404 -163160943 + (TA)n Simple_repeat Simple_repeat 2 34 0 2227 87 0 0 chr4 39167735 39168022 -163160325 + AluY SINE Alu 1 287 -24 216 0 0 0 chr4 39168025 39168049 -163160298 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 21 82 0 0 chr4 39168135 39168184 -163160163 + AT_rich Low_complexity Low_complexity 1 49 0 278 187 65 19 chr4 39169367 39169474 -163158873 + (TAGA)n Simple_repeat Simple_repeat 1 112 0 185 0 40 0 chr4 39170596 39170621 -163157726 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 1849 148 0 14 chr4 39172435 39172725 -163155622 - AluSx SINE Alu -26 286 1 364 319 53 0 chr4 39172726 39172839 -163155508 - 7SLRNA srpRNA srpRNA -161 159 41 849 153 25 64 chr4 39173134 39173336 -163155011 - L1MA9 LINE L1 0 6312 6119 2373 151 16 50 chr4 39173484 39173927 -163154420 + MSTC LTR MaLR 1 428 0 3537 244 22 10 chr4 39173984 39175053 -163153294 + L1M4 LINE L1 2705 3786 -2360 2233 133 18 0 chr4 39175048 39175446 -163152901 - L1P LINE L1 -760 5386 4982 * 21 36 0 0 chr4 39175450 39175478 -163152869 + AT_rich Low_complexity Low_complexity 1 28 0 5027 114 13 8 chr4 39175482 39176237 -163152110 + L1PA11 LINE L1 5407 6165 -9 4418 226 60 15 chr4 39176374 39177766 -163150581 + L1M4 LINE L1 3861 5314 -832 526 144 0 99 chr4 39177764 39177875 -163150472 + L1MA9 LINE L1 5821 5920 -371 * 6470 134 38 47 chr4 39177875 39179143 -163149204 + MER52C LTR ERV1 22 1278 0 1720 162 53 21 chr4 39179145 39179521 -163148826 + L1MA9 LINE L1 5925 6312 0 434 200 0 0 chr4 39179524 39179609 -163148738 + L1M LINE L1 5315 5399 -934 2829 111 16 57 chr4 39179610 39180123 -163148224 + L1PA15-16 LINE L1 2081 2572 -4277 330 258 11 11 chr4 39180546 39180639 -163147708 + (TATATG)n Simple_repeat Simple_repeat 4 96 0 314 256 22 44 chr4 39180641 39180731 -163147616 - L1MC4 LINE L1 -1341 6701 6614 35 24 0 0 chr4 39180802 39180844 -163147503 + AT_rich Low_complexity Low_complexity 1 42 0 578 269 108 17 chr4 39180885 39181326 -163147021 + L1MC/D LINE L1 5276 5761 -534 468 175 0 0 chr4 39182546 39182626 -163145721 + MADE1 DNA Mariner 1 80 0 217 371 95 0 chr4 39182948 39183064 -163145283 + L2 LINE L2 3146 3272 0 3875 36 0 2 chr4 39184377 39184848 -163143499 + L1PA4 LINE L1 5682 6151 -4 845 275 92 61 chr4 39185305 39185698 -163142649 + MLT1K LTR MaLR 165 569 -19 741 237 138 22 chr4 39186077 39186301 -163142046 - MIR SINE MIR -4 258 9 1536 154 4 0 chr4 39187291 39187550 -163140797 - L1MA5A LINE L1 -8 6289 6030 676 309 71 30 chr4 39187788 39188138 -163140209 + L2 LINE L2 2707 3078 -235 4030 116 26 3 chr4 39188138 39188759 -163139588 - MER41B LTR ERV1 0 635 1 676 309 71 30 chr4 39188759 39188854 -163139493 + L2 LINE L2 3078 3168 -145 457 188 62 18 chr4 39188957 39189069 -163139278 + MER4A LTR ERV1 1 117 -547 674 162 8 174 chr4 39189146 39189480 -163138867 + LTR34 LTR ERV1 136 260 -205 552 251 33 63 chr4 39189453 39189730 -163138617 + MER4C LTR ERV1 273 465 0 * 2209 85 3 26 chr4 39189745 39190080 -163138267 - AluSc SINE Alu 0 309 1 255 61 0 0 chr4 39190084 39190117 -163138230 + (TTTTC)n Simple_repeat Simple_repeat 2 34 0 325 220 69 107 chr4 39190153 39190204 -163138143 + L2 LINE L2 3158 3209 -104 2973 167 24 43 chr4 39190204 39190827 -163137520 - LTR9 LTR ERV1 0 612 2 325 220 69 107 chr4 39190827 39190934 -163137413 + L2 LINE L2 3209 3310 -3 316 240 70 30 chr4 39190939 39191039 -163137308 + MLT1J LTR MaLR 80 183 -328 271 311 71 49 chr4 39191370 39191553 -163136794 - L2 LINE L2 -831 2483 2297 2008 104 4 0 chr4 39192711 39192979 -163135368 + AluSg SINE Alu 1 269 -41 396 0 0 0 chr4 39192986 39193030 -163135317 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 23 54 0 0 chr4 39193418 39193455 -163134892 + AT_rich Low_complexity Low_complexity 1 37 0 478 282 46 24 chr4 39194231 39194429 -163133918 + MIR SINE MIR 6 208 -54 188 264 161 11 chr4 39195078 39195165 -163133182 - MIR SINE MIR -151 111 12 237 284 149 14 chr4 39196018 39196159 -163132188 - L2 LINE L2 -5 3267 3108 22 0 0 0 chr4 39196378 39196400 -163131947 + AT_rich Low_complexity Low_complexity 1 22 0 186 225 25 0 chr4 39196405 39196445 -163131902 - MIR SINE MIR -211 51 11 719 128 0 0 chr4 39196451 39196560 -163131787 + MER30B DNA MER1_type 1 109 -81 402 332 69 40 chr4 39196564 39196950 -163131397 - L2 LINE L2 -176 3137 2731 904 226 65 36 chr4 39196970 39197218 -163131129 - MIR SINE MIR 0 262 8 195 306 47 24 chr4 39197144 39197229 -163131118 + MIR SINE MIR 7 93 -169 * 199 184 0 0 chr4 39197987 39198025 -163130322 - MIR SINE MIR -3 259 222 * 260 211 203 65 chr4 39197991 39198114 -163130233 - L2 LINE L2 -13 3300 3161 835 281 111 47 chr4 39198619 39199106 -163129241 + LTR33A LTR ERVL 6 523 0 210 366 37 0 chr4 39199150 39199232 -163129115 + MIR SINE MIR 45 129 -79 544 300 77 14 chr4 39199451 39199671 -163128676 - MIR SINE MIR -25 237 4 214 167 0 0 chr4 39200198 39200234 -163128113 + (TATATG)n Simple_repeat Simple_repeat 1 36 0 755 303 103 39 chr4 39200898 39201432 -163126915 + L1MCc LINE L1 23 590 -5833 430 230 137 14 chr4 39201437 39201576 -163126771 + MLT1A2 LTR MaLR 219 374 0 832 202 30 25 chr4 39201579 39201782 -163126565 - L1M4 LINE L1 -1099 5047 4844 2197 218 82 0 chr4 39201938 39202416 -163125931 + LTR53 LTR ERVL 2 518 -1 431 217 68 75 chr4 39204077 39204238 -163124109 + LTR50 LTR ERVL 8 167 -628 2190 110 3 10 chr4 39204253 39204562 -163123785 + AluSx SINE Alu 1 307 -5 365 232 36 9 chr4 39204863 39204975 -163123372 + LTR33A LTR ERVL 409 523 0 2337 97 0 6 chr4 39205646 39205957 -163122390 + AluSp SINE Alu 1 309 -4 29 0 0 0 chr4 39207135 39207164 -163121183 + AT_rich Low_complexity Low_complexity 1 29 0 205 400 136 7 chr4 39207439 39207594 -163120753 - L2 LINE L2 -3 3269 3095 1370 226 31 65 chr4 39207681 39208160 -163120187 + MLT1C LTR MaLR 1 463 -4 211 274 16 0 chr4 39208359 39208421 -163119926 + GA-rich Low_complexity Low_complexity 1 63 0 195 100 0 0 chr4 39208933 39208963 -163119384 + (TG)n Simple_repeat Simple_repeat 2 31 0 1502 154 138 0 chr4 39208993 39209253 -163119094 + AluSx SINE Alu 1 296 -16 2216 173 33 81 chr4 39209422 39209579 -163118768 - L1MA10 LINE L1 -1 6333 6170 2712 19 0 10 chr4 39209579 39209892 -163118455 - AluY SINE Alu -1 310 1 2216 173 33 81 chr4 39209892 39210279 -163118068 - L1MA10 LINE L1 -164 6170 5815 234 98 87 65 chr4 39210332 39210424 -163117923 + (TTTA)n Simple_repeat Simple_repeat 3 96 0 241 277 0 0 chr4 39210427 39210492 -163117855 + MER63 DNA MER1_type 686 750 -312 323 246 98 20 chr4 39210556 39210701 -163117646 - MIR SINE MIR -63 145 19 2591 99 8 5 chr4 39210841 39211216 -163117131 + L1PB1 LINE L1 5776 6151 0 218 191 44 0 chr4 39211219 39211287 -163117060 + A-rich Low_complexity Low_complexity 1 71 0 32 26 0 0 chr4 39211617 39211656 -163116691 + AT_rich Low_complexity Low_complexity 1 39 0 467 315 35 7 chr4 39213069 39213212 -163115135 + MIR SINE MIR 2 148 -114 2126 182 29 9 chr4 39213217 39213662 -163114685 + L1MA4 LINE L1 5845 6298 -2 186 379 16 0 chr4 39213684 39213808 -163114539 + MIR SINE MIR 137 262 0 547 231 8 0 chr4 39213863 39213980 -163114367 + MER45A DNA AcHobo 60 177 -1 2197 100 0 0 chr4 39214926 39215289 -163113058 - AluSc SINE Alu 0 363 1 1216 203 24 117 chr4 39215518 39215849 -163112498 - MLT1B LTR MaLR -10 380 94 2161 119 3 13 chr4 39215849 39216161 -163112186 + AluSc SINE Alu 1 309 0 1216 203 24 117 chr4 39216161 39216248 -163112099 - MLT1B LTR MaLR -296 94 1 239 263 18 0 chr4 39216419 39216476 -163111871 - L2 LINE L2 0 3272 3215 551 284 106 40 chr4 39217199 39217548 -163110799 + LTR16A1 LTR ERVL 1 372 -85 25 0 0 0 chr4 39217982 39218007 -163110340 + AT_rich Low_complexity Low_complexity 1 25 0 232 203 94 0 chr4 39219201 39219265 -163109082 - MARNA DNA Mariner -11 575 506 1705 39 0 14 chr4 39219459 39219666 -163108681 + AluY SINE Alu 92 295 -16 367 275 7 49 chr4 39219935 39220077 -163108270 - L1ME LINE L1 -394 5837 5702 393 284 88 15 chr4 39220140 39220344 -163108003 - L1ME LINE L1 -531 5704 5486 374 299 14 54 chr4 39220414 39220692 -163107655 + L1MEc LINE L1 1401 1667 -4729 2130 274 92 48 chr4 39221014 39222465 -163105882 - L1ME LINE L1 -1748 4467 2922 5684 116 66 5 chr4 39222465 39224063 -163104284 - L1PA13 LINE L1 0 6163 4519 2130 274 92 48 chr4 39224063 39224394 -163103953 - L1ME LINE L1 -3293 2922 2607 334 259 108 8 chr4 39224470 39224729 -163103618 - L1ME LINE L1 -3992 2404 2120 3295 253 76 43 chr4 39224850 39225356 -163102991 - L1MEc LINE L1 -1602 4613 4125 270 0 0 0 chr4 39225356 39225386 -163102961 + (GTTTG)n Simple_repeat Simple_repeat 1 30 0 3295 253 76 43 chr4 39225386 39226241 -163102106 - L1MEc LINE L1 -2090 4125 3190 1468 160 44 7 chr4 39226241 39226516 -163101831 - L1PA16 LINE L1 -9 6157 5873 3295 253 76 43 chr4 39226516 39226753 -163101594 - L1MEc LINE L1 -3025 3190 2962 666 231 55 48 chr4 39226758 39227098 -163101249 - L1MEc LINE L1 -3766 2461 2146 230 245 75 19 chr4 39227231 39227337 -163101010 - L1M4 LINE L1 -3034 3112 3001 3215 189 21 20 chr4 39227433 39228351 -163099996 + L1M1 LINE L1 4684 5609 -694 * 17469 166 32 7 chr4 39228346 39231333 -163097014 + L1MA3 LINE L1 12 3071 -4494 2741 98 31 0 chr4 39231354 39231741 -163096606 - MLT2A1 LTR ERVL -45 399 1 2944 148 37 31 chr4 39231741 39232613 -163095734 + L1MA3 LINE L1 3069 3952 -3613 356 94 0 0 chr4 39232613 39232666 -163095681 - MADE1 DNA Mariner -27 53 1 3642 171 16 72 chr4 39232671 39233078 -163095269 + L1MA3 LINE L1 5588 6016 -1670 234 0 0 0 chr4 39233078 39233104 -163095243 + (TTA)n Simple_repeat Simple_repeat 3 28 0 15663 70 7 0 chr4 39233104 39235950 -163092397 - L1PA6 LINE L1 -18 6136 3275 3642 171 16 72 chr4 39235950 39236986 -163091361 + L1MA3 LINE L1 6014 6943 -743 1051 118 24 0 chr4 39237008 39237177 -163091170 - L1MA3 LINE L1 0 6305 6133 4651 136 8 6 chr4 39237177 39237953 -163090394 + L1MA3 LINE L1 6947 7724 0 1041 235 116 78 chr4 39237993 39238841 -163089506 - L1MC4a LINE L1 -1346 6462 5583 1149 211 5 0 chr4 39238943 39239152 -163089195 - MER2 DNA MER2_type -135 210 1 693 287 23 11 chr4 39239159 39239420 -163088927 - L1MC4a LINE L1 -2230 5578 5315 520 315 53 50 chr4 39239426 39239953 -163088394 - L1MC4a LINE L1 -888 5258 4736 303 212 141 20 chr4 39240824 39240923 -163087424 - MLT1K LTR MaLR 0 588 478 406 267 111 47 chr4 39240955 39241127 -163087220 - MLT1K LTR MaLR -196 392 210 24 32 0 0 chr4 39242255 39242286 -163086061 + AT_rich Low_complexity Low_complexity 1 31 0 220 304 22 22 chr4 39242660 39242752 -163085595 - MIR SINE MIR -47 215 124 511 357 15 0 chr4 39243704 39243900 -163084447 + MIR SINE MIR 48 246 -16 1780 137 32 7 chr4 39244392 39244669 -163083678 + AluSx SINE Alu 1 284 -28 306 371 16 21 chr4 39244850 39245036 -163083311 + L2 LINE L2 3125 3309 -4 2358 84 3 0 chr4 39245245 39245555 -163082792 + AluY SINE Alu 1 311 0 252 103 0 0 chr4 39245662 39245701 -163082646 - MADE1 DNA Mariner -41 39 1 22 35 0 0 chr4 39245866 39245895 -163082452 + AT_rich Low_complexity Low_complexity 1 29 0 2443 189 37 2 chr4 39246107 39246595 -163081752 - LTR22 LTR ERVK -4 505 1 5916 200 29 10 chr4 39246672 39248190 -163080157 + L1P4 LINE L1 3947 5501 -665 2311 173 2 18 chr4 39248193 39248586 -163079761 + Ricksha DNA DNA 334 720 -2526 3064 185 5 10 chr4 39248588 39249177 -163079170 + Ricksha DNA DNA 2274 3214 -13 261 178 0 0 chr4 39249179 39249224 -163079123 - L1MA9 LINE L1 -322 5990 5946 27 0 0 0 chr4 39249806 39249833 -163078514 + AT_rich Low_complexity Low_complexity 1 27 0 186 327 19 39 chr4 39250386 39250490 -163077857 + MIR SINE MIR 5 106 -156 1225 224 81 48 chr4 39251039 39251459 -163076888 + LTR47B LTR ERVL 3 436 -7 814 293 39 4 chr4 39251652 39251884 -163076463 + MIR SINE MIR 23 262 0 21 36 0 0 chr4 39252213 39252241 -163076106 + AT_rich Low_complexity Low_complexity 1 28 0 3838 289 43 29 chr4 39253258 39254868 -163073479 + L1PBa LINE L1 7 1640 -5223 * 5485 179 31 18 chr4 39254838 39256143 -163072204 + L1PB3 LINE L1 653 1975 -4875 665 164 0 0 chr4 39256152 39256262 -163072085 - MSTA LTR MaLR -318 110 1 234 114 0 0 chr4 39256262 39256297 -163072050 + L1PB3 LINE L1 2604 2638 -4211 * 11250 205 31 12 chr4 39256287 39257248 -163071099 + L1PB3 LINE L1 3002 3943 -2914 2093 126 51 28 chr4 39257248 39257604 -163070743 + THE1B LTR MaLR 1 364 0 11250 205 31 12 chr4 39257604 39260419 -163067928 + L1PB3 LINE L1 3943 6850 -7 22 0 0 0 chr4 39260859 39260881 -163067466 + AT_rich Low_complexity Low_complexity 1 22 0 575 241 186 8 chr4 39261281 39261517 -163066830 - LTR16A1 LTR ERVL -2 455 178 216 97 0 0 chr4 39261551 39261582 -163066765 + (GA)n Simple_repeat Simple_repeat 1 31 0 253 139 0 0 chr4 39261612 39261648 -163066699 - LTR16A1 LTR ERVL -421 36 1 2074 96 20 27 chr4 39262065 39262366 -163065981 + AluY SINE Alu 1 299 -12 1803 168 0 3 chr4 39263430 39263722 -163064625 + AluSx SINE Alu 1 291 -21 23 54 0 0 chr4 39264108 39264145 -163064202 + AT_rich Low_complexity Low_complexity 1 37 0 249 33 0 0 chr4 39265106 39265136 -163063211 + (A)n Simple_repeat Simple_repeat 1 30 0 1259 211 33 0 chr4 39265262 39265561 -163062786 - MER33 DNA MER1_type -14 310 2 315 49 0 0 chr4 39265699 39265740 -163062607 + (CA)n Simple_repeat Simple_repeat 2 42 0 41 0 0 0 chr4 39266423 39266464 -163061883 + AT_rich Low_complexity Low_complexity 1 41 0 2574 61 0 0 chr4 39267256 39267566 -163060781 + AluY SINE Alu 2 311 0 201 152 0 0 chr4 39268474 39268507 -163059840 + (CA)n Simple_repeat Simple_repeat 2 34 0 407 298 94 21 chr4 39268906 39269097 -163059250 + L3 LINE CR1 1209 1413 -164 5415 66 18 8 chr4 39269208 39269931 -163058416 - HERVE LTR ERV1 -5904 992 263 691 93 0 46 chr4 39269924 39270032 -163058315 - HERVE LTR ERV1 -7428 385 283 * 1506 207 0 0 chr4 39270032 39270362 -163057985 - AluY SINE Alu 0 332 3 1400 220 3 14 chr4 39270364 39270660 -163057687 - HERVE LTR ERV1 -6603 293 1 2300 56 0 7 chr4 39271431 39271716 -163056631 + AluYb8 SINE Alu 23 305 -13 579 103 23 0 chr4 39272738 39272825 -163055522 + L1PA16 LINE L1 6067 6155 -11 24 0 0 0 chr4 39273477 39273501 -163054846 + AT_rich Low_complexity Low_complexity 1 24 0 351 227 21 62 chr4 39273588 39273685 -163054662 - MIR SINE MIR -71 137 45 323 317 42 8 chr4 39274415 39274535 -163053812 + MIR SINE MIR 28 151 -111 277 347 0 0 chr4 39274726 39274801 -163053546 + MIR3 SINE MIR 111 185 -23 2485 180 11 125 chr4 39276977 39277617 -163050730 - MER70B LTR ERVL 0 578 12 23 68 0 0 chr4 39277677 39277721 -163050626 + AT_rich Low_complexity Low_complexity 1 44 0 242 301 97 35 chr4 39278344 39278457 -163049890 + MIR SINE MIR 13 132 -130 370 259 26 26 chr4 39278522 39278638 -163049709 + L1ME LINE L1 5542 5657 -513 562 287 27 37 chr4 39278701 39278889 -163049458 - MER117 DNA MER1_type -7 190 5 258 297 121 15 chr4 39280366 39280508 -163047839 - MIR SINE MIR -62 146 17 599 283 113 13 chr4 39280608 39280838 -163047509 + MIR SINE MIR 9 261 -1 206 298 42 52 chr4 39281299 39281490 -163046857 - L2 LINE L2 -1059 2255 2067 322 337 91 36 chr4 39281873 39282125 -163046222 + L1ME LINE L1 5321 5586 -576 23 0 0 0 chr4 39282537 39282560 -163045787 + AT_rich Low_complexity Low_complexity 1 23 0 203 393 17 8 chr4 39282569 39282686 -163045661 - L3b LINE CR1 -337 1246 1129 258 164 0 0 chr4 39282755 39282810 -163045537 + (ATG)n Simple_repeat Simple_repeat 2 56 0 325 300 173 0 chr4 39282929 39283079 -163045268 + MIR SINE MIR 68 243 -19 342 115 0 0 chr4 39283750 39283802 -163044545 + (TG)n Simple_repeat Simple_repeat 1 52 0 * 380 20 20 0 chr4 39283801 39283850 -163044497 + (GA)n Simple_repeat Simple_repeat 1 50 0 1925 168 77 35 chr4 39283850 39284255 -163044092 + MSTA LTR MaLR 6 427 -1 363 96 0 0 chr4 39284255 39284307 -163044040 + (TG)n Simple_repeat Simple_repeat 1 52 0 1743 136 59 59 chr4 39284500 39284875 -163043472 - THE1C LTR MaLR 0 375 1 353 290 61 38 chr4 39284883 39285014 -163043333 + MIR SINE MIR 59 192 -70 360 250 116 27 chr4 39286055 39286167 -163042180 + L2 LINE L2 3187 3308 -5 2128 106 72 58 chr4 39286360 39286719 -163041628 + THE1B LTR MaLR 1 364 0 276 114 0 0 chr4 39287084 39287128 -163041219 - L1 LINE L1 -1323 4823 4780 2252 92 38 14 chr4 39287129 39287497 -163040850 + L1MA1 LINE L1 5926 6302 0 346 253 0 48 chr4 39288129 39288212 -163040135 + MIR SINE MIR 163 241 -21 291 298 37 81 chr4 39289133 39289294 -163039053 + L2 LINE L2 2946 3099 -173 1924 154 11 60 chr4 39289304 39289538 -163038809 - MER7A DNA MER2_type -2694 344 100 2053 131 54 23 chr4 39289538 39289889 -163038458 + THE1B LTR MaLR 3 364 0 11564 102 3 0 chr4 39289889 39291460 -163036887 + THE1B-int LTR MaLR 1 1576 -4 1846 130 73 45 chr4 39291470 39291824 -163036523 + THE1B LTR MaLR 1 364 0 1924 154 11 60 chr4 39291824 39291941 -163036406 - MER7A DNA MER2_type -2946 92 1 1618 140 3 107 chr4 39292509 39292845 -163035502 - MER50 LTR ERV1 0 734 434 1221 167 62 4 chr4 39292829 39293000 -163035347 - MER50 LTR ERV1 -494 240 51 * 354 91 0 0 chr4 39293000 39293055 -163035292 + (TG)n Simple_repeat Simple_repeat 1 55 0 1221 167 62 4 chr4 39293055 39293110 -163035237 - MER50 LTR ERV1 -683 51 1 1651 197 37 20 chr4 39293242 39293598 -163034749 + MLT1A1 LTR MaLR 1 465 -2 258 262 75 37 chr4 39293634 39293741 -163034606 + MLT1J LTR MaLR 243 353 -158 286 279 0 13 chr4 39293893 39293972 -163034375 - MLT1I LTR MaLR -10 399 322 341 265 143 7 chr4 39294132 39294279 -163034068 - MLT1I LTR MaLR -238 171 5 5369 126 21 19 chr4 39294338 39295415 -163032932 + L1PA15 LINE L1 4585 5674 -491 2318 52 42 0 chr4 39295415 39295701 -163032646 + AluY SINE Alu 1 298 -13 5369 126 21 19 chr4 39295701 39296190 -163032157 + L1PA15 LINE L1 5674 6160 -5 183 42 0 0 chr4 39296233 39296257 -163032090 + (A)n Simple_repeat Simple_repeat 1 24 0 279 259 85 22 chr4 39296924 39297059 -163031288 + MIR SINE MIR 51 183 -45 180 333 0 0 chr4 39297733 39297784 -163030563 - MIR SINE MIR -2 260 210 4238 147 14 0 chr4 39297798 39298499 -163029848 - Ricksha DNA DNA -30 3216 2506 325 167 0 0 chr4 39298508 39298568 -163029779 - Ricksha DNA DNA -1735 311 252 556 130 0 0 chr4 39298575 39298667 -163029680 - Ricksha DNA DNA -3146 100 9 379 306 71 18 chr4 39298667 39298837 -163029510 - MIR SINE MIR -36 226 48 740 294 86 53 chr4 39300898 39301305 -163027042 + MLT1J LTR MaLR 36 425 -21 811 0 20 0 chr4 39301886 39301985 -163026362 + (TCTA)n Simple_repeat Simple_repeat 1 101 0 403 327 93 30 chr4 39302411 39302711 -163025636 - L2 LINE L2 -713 2601 2283 722 244 17 28 chr4 39302712 39302892 -163025455 + MER63A DNA MER1_type 3 180 -30 238 248 18 80 chr4 39302999 39303112 -163025235 - L1ME LINE L1 -3385 2695 2590 410 300 146 4 chr4 39303278 39303531 -163024816 - L1ME LINE L1 -3712 2368 2080 315 265 173 12 chr4 39303531 39303693 -163024654 - LTR41 LTR ERVL -2 771 584 4090 184 27 0 chr4 39303940 39304464 -163023883 + MER44D DNA MER2_type 2 423 -2064 2339 101 48 25 chr4 39304464 39304820 -163023527 + THE1B LTR MaLR 1 364 0 4090 184 27 0 chr4 39304820 39305006 -163023341 + MER44D DNA MER2_type 423 603 -2 972 294 27 61 chr4 39305009 39305451 -163022896 - ERVL LTR ERVL -387 5377 4951 * 3020 256 39 25 chr4 39305449 39306238 -163022109 - ERVL LTR ERVL -1284 4480 3676 2281 101 0 3 chr4 39306238 39306544 -163021803 - AluSq SINE Alu -8 305 1 3020 256 39 25 chr4 39306544 39306625 -163021722 - ERVL LTR ERVL -2088 3676 3598 362 316 38 48 chr4 39306722 39307013 -163021334 - L1ME LINE L1 -5174 896 609 1329 291 69 12 chr4 39307352 39307844 -163020503 + LTR33 LTR ERVL 2 521 0 261 283 28 9 chr4 39308114 39308220 -163020127 - L1ME3A LINE L1 -246 5924 5817 246 42 62 0 chr4 39308590 39308638 -163019709 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 21 0 0 0 chr4 39309465 39309486 -163018861 + AT_rich Low_complexity Low_complexity 1 21 0 2139 141 0 3 chr4 39310102 39310414 -163017933 + AluSq SINE Alu 1 311 -2 21 36 0 0 chr4 39310456 39310484 -163017863 + AT_rich Low_complexity Low_complexity 1 28 0 649 318 86 21 chr4 39310553 39311082 -163017265 + L1ME4a LINE L1 5259 5836 -285 302 222 0 25 chr4 39311144 39311225 -163017122 + L1ME4a LINE L1 6040 6118 -3 183 284 15 30 chr4 39311301 39311368 -163016979 + L2 LINE L2 352 417 -2897 192 367 163 0 chr4 39312305 39312403 -163015944 + L2 LINE L2 3140 3253 -19 298 282 14 0 chr4 39314084 39314155 -163014192 - L2 LINE L2 -47 3266 3195 544 265 20 20 chr4 39314301 39314452 -163013895 + MIR SINE MIR 2 152 -110 2157 121 3 0 chr4 39314738 39315036 -163013311 + AluSp SINE Alu 1 299 -14 2406 184 9 19 chr4 39315129 39315559 -163012788 - MSTC LTR MaLR -2 426 1 23 33 0 0 chr4 39315697 39315727 -163012620 + AT_rich Low_complexity Low_complexity 1 30 0 859 273 80 33 chr4 39315727 39316064 -163012283 - HAL1 LINE L1 -1659 848 496 1482 212 123 64 chr4 39316100 39316694 -163011653 + MLT1E2 LTR MaLR 3 626 0 2283 124 30 25 chr4 39316734 39317096 -163011251 - THE1B LTR MaLR 0 364 1 562 277 52 69 chr4 39317136 39317360 -163010987 - HAL1 LINE L1 -2116 391 174 1833 186 37 8 chr4 39317360 39317715 -163010632 + MLT1A1 LTR MaLR 1 365 0 562 277 52 69 chr4 39317715 39317837 -163010510 - HAL1 LINE L1 -2333 174 51 609 164 36 0 chr4 39318351 39318461 -163009886 + MER3 DNA MER1_type 49 162 -47 1250 192 62 19 chr4 39318464 39318833 -163009514 + MER3 DNA MER1_type 2234 2618 0 2242 96 7 3 chr4 39319522 39319815 -163008532 + AluSq SINE Alu 1 294 -19 196 269 169 50 chr4 39320170 39320330 -163008017 - L2 LINE L2 -1038 2276 2098 553 272 73 39 chr4 39320986 39321218 -163007129 - MLT1I LTR MaLR -7 402 163 1113 319 110 34 chr4 39321446 39322185 -163006162 - ERVL LTR ERVL -2270 2726 1851 2306 151 8 60 chr4 39322185 39322614 -163005733 - MER65A LTR ERV1 0 445 40 198 0 0 0 chr4 39322614 39322636 -163005711 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 2306 151 8 60 chr4 39322636 39322675 -163005672 - MER65A LTR ERV1 -405 40 1 1113 319 110 34 chr4 39322675 39322942 -163005405 - ERVL LTR ERVL -3145 1851 1606 216 0 0 0 chr4 39323214 39323238 -163005109 + (T)n Simple_repeat Simple_repeat 1 24 0 310 314 10 0 chr4 39323261 39323363 -163004984 - ERVL LTR ERVL -3784 1212 1110 793 222 11 21 chr4 39323453 39323642 -163004705 - MER5A DNA MER1_type -1 188 2 1703 166 43 6 chr4 39323844 39323945 -163004402 + MER44D DNA MER2_type 2 98 -2393 365 39 20 0 chr4 39323945 39323996 -163004351 + (TAGA)n Simple_repeat Simple_repeat 1 52 0 1703 166 43 6 chr4 39323996 39324220 -163004127 + MER44D DNA MER2_type 98 609 0 21 0 0 0 chr4 39324480 39324501 -163003846 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr4 39326084 39326107 -163002240 + AT_rich Low_complexity Low_complexity 1 23 0 329 317 156 18 chr4 39326306 39326473 -163001874 - MIR SINE MIR -24 238 49 2672 99 19 0 chr4 39326850 39327224 -163001123 - L1PA10 LINE L1 -4 6164 5784 349 286 67 39 chr4 39327506 39327684 -163000663 + L3 LINE CR1 749 931 -646 182 289 0 0 chr4 39327764 39327809 -163000538 - L2 LINE L2 0 3313 3269 563 306 69 25 chr4 39327813 39328058 -163000289 + MIR SINE MIR 7 262 0 30 27 0 0 chr4 39328062 39328099 -163000248 + AT_rich Low_complexity Low_complexity 1 37 0 863 331 90 44 chr4 39328102 39328470 -162999877 + L2 LINE L2 2197 2547 -766 2334 128 43 0 chr4 39328470 39328821 -162999526 - MER47A DNA MER2_type 0 366 1 863 331 90 44 chr4 39328821 39329514 -162998833 + L2 LINE L2 2547 3313 0 392 333 50 81 chr4 39329521 39330221 -162998126 - L2 LINE L2 -234 3038 2301 262 355 59 21 chr4 39330635 39330821 -162997526 - L2 LINE L2 -1424 1890 1698 339 346 43 25 chr4 39331031 39331193 -162997154 + L3 LINE CR1 1410 1574 -3 28 0 0 0 chr4 39331492 39331520 -162996827 + AT_rich Low_complexity Low_complexity 1 28 0 2137 125 7 0 chr4 39331617 39331913 -162996434 + AluSx SINE Alu 1 298 -14 23 33 0 0 chr4 39332654 39332684 -162995663 + AT_rich Low_complexity Low_complexity 1 30 0 2053 146 60 3 chr4 39332689 39333058 -162995289 + MLT1B LTR MaLR 1 390 0 795 239 34 6 chr4 39333103 39333279 -162995068 - MER5A DNA MER1_type -8 181 1 534 214 45 0 chr4 39333505 39333617 -162994730 - MER63 DNA MER1_type -319 743 1 2150 113 0 0 chr4 39333672 39333954 -162994393 + AluSx SINE Alu 1 282 -30 23 0 0 0 chr4 39334098 39334121 -162994226 + AT_rich Low_complexity Low_complexity 1 23 0 414 313 15 8 chr4 39334799 39334930 -162993417 - L2 LINE L2 0 3313 3182 200 303 22 0 chr4 39335008 39335097 -162993250 + (TA)n Simple_repeat Simple_repeat 2 92 0 489 146 13 26 chr4 39335129 39335280 -162993067 + (TA)n Simple_repeat Simple_repeat 1 149 0 270 176 0 0 chr4 39335369 39335420 -162992927 + (TA)n Simple_repeat Simple_repeat 1 51 0 386 181 0 28 chr4 39335505 39335649 -162992698 + (TA)n Simple_repeat Simple_repeat 2 141 0 1849 209 92 16 chr4 39336104 39336528 -162991819 + MER74B LTR ERVL 46 501 -121 239 121 0 0 chr4 39336528 39336561 -162991786 - MLT2B1 LTR ERVL 0 520 488 2005 110 16 50 chr4 39336561 39337002 -162991345 - MER51B LTR ERV1 0 377 3 2111 179 55 21 chr4 39337014 39337434 -162990913 - MLT2B1 LTR ERVL -80 440 7 511 170 62 18 chr4 39337448 39337560 -162990787 + MER74B LTR ERVL 506 622 0 356 244 76 30 chr4 39338009 39338140 -162990207 - MIR SINE MIR -33 229 93 261 295 27 27 chr4 39338442 39338554 -162989793 - MLT1L LTR MaLR -143 472 361 195 315 250 0 chr4 39338859 39338967 -162989380 + L2 LINE L2 3136 3270 -2 180 0 0 0 chr4 39338992 39339012 -162989335 + (TTG)n Simple_repeat Simple_repeat 2 21 0 279 0 0 0 chr4 39339215 39339246 -162989101 + (CA)n Simple_repeat Simple_repeat 2 32 0 584 292 36 43 chr4 39340208 39340637 -162987710 + LTR33 LTR ERVL 43 502 -19 22 0 0 0 chr4 39341375 39341397 -162986950 + AT_rich Low_complexity Low_complexity 1 22 0 196 369 12 12 chr4 39341411 39341495 -162986852 + MIR3 SINE MIR 75 158 -50 22 56 0 0 chr4 39341599 39341635 -162986712 + AT_rich Low_complexity Low_complexity 1 36 0 2125 132 0 3 chr4 39341678 39341981 -162986366 - AluSg SINE Alu -8 302 1 868 170 88 0 chr4 39342211 39342308 -162986039 - L1MA9 LINE L1 -422 5890 5803 213 94 0 0 chr4 39342308 39342340 -162986007 + (TG)n Simple_repeat Simple_repeat 2 33 0 868 170 88 0 chr4 39342340 39342413 -162985934 - L1MA9 LINE L1 -509 5803 5705 2189 140 36 0 chr4 39342416 39342801 -162985546 + L1MA9 LINE L1 5912 6310 -2 348 253 120 51 chr4 39342847 39343005 -162985342 + L1ME3 LINE L1 5269 5437 -725 348 364 70 17 chr4 39343022 39343324 -162985023 + L1ME3 LINE L1 5629 5946 -216 10209 208 59 22 chr4 39343332 39347159 -162981188 + L1MA1 LINE L1 15 4316 -3249 2108 143 41 14 chr4 39347159 39347524 -162980823 - THE1C LTR MaLR 0 375 1 9366 140 43 10 chr4 39347533 39349051 -162979296 - THE1C-int LTR MaLR -11 1569 1 2111 133 68 6 chr4 39349051 39349404 -162978943 - THE1C LTR MaLR 0 375 1 12071 154 20 13 chr4 39349405 39352754 -162975593 + L1MA1 LINE L1 4313 7692 -29 31 44 0 0 chr4 39353424 39353469 -162974878 + AT_rich Low_complexity Low_complexity 1 45 0 370 284 74 65 chr4 39353492 39353707 -162974640 - L1M4 LINE L1 -1197 4949 4733 261 303 184 13 chr4 39353719 39353871 -162974476 + MER5B DNA MER1_type 1 178 0 214 355 97 32 chr4 39354920 39355075 -162973272 + MIR SINE MIR 50 214 -48 567 211 67 62 chr4 39355119 39355327 -162973020 - MER112 DNA MER1_type -50 210 2 421 277 220 0 chr4 39356014 39356155 -162972192 + MIR SINE MIR 87 258 -4 337 229 99 104 chr4 39356155 39356356 -162971991 - LTR16A LTR ERVL 0 450 251 294 306 24 24 chr4 39356374 39356498 -162971849 - LTR16A1 LTR ERVL -311 146 23 288 384 60 0 chr4 39356678 39356863 -162971484 - HERVL LTR ERVL -648 5006 4811 819 299 47 58 chr4 39356864 39357312 -162971035 - HERVL LTR ERVL -852 4912 4470 393 340 84 20 chr4 39357378 39357515 -162970832 + MLT1K LTR MaLR 366 522 -66 1032 214 182 38 chr4 39357515 39357861 -162970486 - MSTD LTR MaLR 0 396 1 393 340 84 20 chr4 39357861 39357926 -162970421 + MLT1K LTR MaLR 522 581 -7 2237 86 3 17 chr4 39357959 39358260 -162970087 - AluY SINE Alu -14 297 1 352 337 51 20 chr4 39358510 39358706 -162969641 - MIR SINE MIR -8 254 53 1853 115 67 7 chr4 39358749 39359042 -162969305 - AluSx SINE Alu 0 309 1 2080 176 8 6 chr4 39359316 39359680 -162968667 - MLT1A1 LTR MaLR 0 365 1 303 229 180 25 chr4 39359681 39359803 -162968544 - MIR SINE MIR -114 148 8 2119 102 7 3 chr4 39359834 39360129 -162968218 + AluSx SINE Alu 2 297 -15 2375 65 16 3 chr4 39360131 39360438 -162967909 + AluY SINE Alu 1 311 0 237 201 5 5 chr4 39360445 39360504 -162967843 - MIR SINE MIR -78 130 71 2287 179 19 9 chr4 39361778 39362197 -162966150 - MER95 LTR ERV 0 431 9 243 103 0 0 chr4 39363138 39363177 -162965170 + (CA)n Simple_repeat Simple_repeat 2 40 0 456 284 71 22 chr4 39363983 39364166 -162964181 + MIR SINE MIR 6 197 -65 763 282 62 4 chr4 39364224 39364451 -162963896 - MIR SINE MIR -21 241 2 305 214 71 65 chr4 39364926 39365080 -162963267 + MER103 DNA DNA 11 165 -1 1486 216 108 19 chr4 39365081 39365585 -162962762 + MLT2F LTR ERVL 1 595 -68 7422 255 59 20 chr4 39365836 39368449 -162959898 - L1MEc LINE L1 -1227 4988 2247 880 216 50 40 chr4 39368449 39368671 -162959676 + MER58A DNA MER1_type 1 224 0 7422 255 59 20 chr4 39368671 39369228 -162959119 - L1MEc LINE L1 -3968 2247 1713 22 0 0 0 chr4 39369228 39369250 -162959097 + AT_rich Low_complexity Low_complexity 1 22 0 319 88 18 0 chr4 39369250 39369307 -162959040 - L1PA6 LINE L1 0 6154 6097 249 286 75 25 chr4 39369388 39369549 -162958798 - L1ME LINE L1 -389 5732 5564 381 231 54 68 chr4 39369599 39369746 -162958601 - MLT1H LTR MaLR -195 354 210 2498 79 0 0 chr4 39370213 39370516 -162957831 - AluSc SINE Alu -4 305 3 221 263 40 50 chr4 39371192 39371291 -162957056 - L2 LINE L2 -2 3270 3173 579 149 70 0 chr4 39371349 39371463 -162956884 + L1MB3 LINE L1 6060 6181 -2 338 24 0 0 chr4 39371683 39371725 -162956622 + MADE1 DNA Mariner 39 80 0 323 309 227 27 chr4 39371942 39372339 -162956008 - L2 LINE L2 -1257 2057 1741 1420 211 62 3 chr4 39372339 39372661 -162955686 - MER58B DNA MER1_type 0 341 1 323 309 227 27 chr4 39372661 39372814 -162955533 - L2 LINE L2 -1573 1741 1397 473 301 8 0 chr4 39372854 39372977 -162955370 - MIR SINE MIR -37 225 102 5415 154 53 8 chr4 39372985 39374382 -162953965 + L1PA16 LINE L1 4718 6157 -9 188 386 11 11 chr4 39374395 39374483 -162953864 - MIR SINE MIR -161 101 14 413 350 22 36 chr4 39374513 39374787 -162953560 - L2 LINE L2 -1975 1339 1070 246 269 231 0 chr4 39375581 39375689 -162952658 + MER5A DNA MER1_type 56 188 -1 646 247 25 16 chr4 39376880 39377071 -162951276 - MIR SINE MIR -57 205 9 536 322 43 111 chr4 39377561 39378642 -162949705 + L2 LINE L2 1572 2575 -739 1166 184 0 40 chr4 39378642 39378870 -162949477 - MER20 DNA MER1_type 0 219 1 536 322 43 111 chr4 39378870 39378916 -162949431 + L2 LINE L2 2575 2623 -691 363 328 74 59 chr4 39379136 39379542 -162948805 + L2 LINE L2 2898 3309 -4 26 30 0 0 chr4 39381518 39381551 -162946796 + AT_rich Low_complexity Low_complexity 1 33 0 2151 109 17 0 chr4 39382082 39382405 -162945942 + AluSg SINE Alu 1 310 0 249 368 48 32 chr4 39383472 39383597 -162944750 - MIR3 SINE MIR -54 154 28 2362 164 10 16 chr4 39383738 39384123 -162944224 - LTR32 LTR ERVL 0 471 89 251 185 123 0 chr4 39384607 39384672 -162943675 - MIR SINE MIR -99 163 91 255 233 27 14 chr4 39384682 39384755 -162943592 - MLT1K LTR MaLR 0 588 515 382 261 17 67 chr4 39384825 39384944 -162943403 - MLT1K LTR MaLR -250 338 226 23 54 0 0 chr4 39385427 39385464 -162942883 + AT_rich Low_complexity Low_complexity 1 37 0 388 145 14 0 chr4 39385628 39385697 -162942650 + L1PA16 LINE L1 6088 6157 -9 1850 180 18 6 chr4 39388387 39388726 -162939621 + MER2 DNA MER2_type 2 344 0 474 237 22 7 chr4 39388939 39389078 -162939269 - L1ME4a LINE L1 -16 6105 5965 7856 10 0 0 chr4 39389199 39390458 -162937889 - L1PA2 LINE L1 -4 6151 4899 11088 31 0 0 chr4 39390458 39391794 -162936553 + L1P LINE L1 2912 4247 -1899 191 333 108 18 chr4 39391966 39392077 -162936270 - L2 LINE L2 -11 3302 3182 2003 145 0 0 chr4 39392240 39392543 -162935804 - AluSg SINE Alu -7 303 1 183 359 41 69 chr4 39392597 39392742 -162935605 - MIR3 SINE MIR -64 144 4 322 297 103 65 chr4 39392860 39393045 -162935302 - MIR3 SINE MIR -12 196 5 454 271 116 40 chr4 39393236 39393461 -162934886 - MIR SINE MIR -10 252 11 927 292 8 8 chr4 39393677 39393927 -162934420 + MIR SINE MIR 3 252 -10 406 319 58 90 chr4 39393952 39394262 -162934085 + L2 LINE L2 2924 3223 -49 198 0 0 0 chr4 39394585 39394607 -162933740 + (TAA)n Simple_repeat Simple_repeat 1 22 0 2021 194 59 30 chr4 39394761 39395252 -162933095 - MLT1D LTR MaLR 0 505 1 880 296 61 40 chr4 39395346 39395772 -162932575 + LTR16A LTR ERVL 16 450 0 2756 224 32 13 chr4 39395940 39396573 -162931774 - MER82 DNA MER2_type -2 651 7 1812 139 7 0 chr4 39397237 39397538 -162930809 - L1PA13 LINE L1 0 6163 5861 1229 200 79 41 chr4 39398126 39398416 -162929931 - AluJo SINE Alu -1 301 1 223 261 127 45 chr4 39400179 39400313 -162928034 + L2 LINE L2 975 1119 -2195 322 355 111 29 chr4 39400827 39400963 -162927384 + L1PBa LINE L1 24 148 -6715 217 0 61 0 chr4 39400963 39400996 -162927351 + (CAA)n Simple_repeat Simple_repeat 2 36 0 322 355 111 29 chr4 39400996 39401338 -162927009 + L1PBa LINE L1 148 541 -6322 * 337 367 6 6 chr4 39401309 39401486 -162926861 + L1PBa LINE L1 1429 1605 -5258 581 346 12 19 chr4 39401550 39401871 -162926476 + L1P5 LINE L1 699 1017 -5833 11810 214 34 35 chr4 39402056 39406572 -162921775 + L1P5 LINE L1 1965 6476 -383 2328 164 16 27 chr4 39406703 39407153 -162921194 + MER65A LTR ERV1 1 445 0 180 111 0 0 chr4 39407393 39407420 -162920927 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 32 57 0 0 chr4 39408192 39408245 -162920102 + AT_rich Low_complexity Low_complexity 1 53 0 202 328 57 41 chr4 39408375 39408497 -162919850 - MIR SINE MIR -3 259 136 211 391 22 0 chr4 39408929 39409021 -162919326 + L2 LINE L2 2968 3061 -252 3929 201 24 38 chr4 39409031 39410215 -162918132 - L1MB7 LINE L1 -18 6664 5505 2409 62 3 0 chr4 39410215 39410505 -162917842 - AluY SINE Alu -20 291 1 3929 201 24 38 chr4 39410505 39410539 -162917808 - L1MB7 LINE L1 -1177 5505 5472 * 5301 252 78 21 chr4 39410535 39412195 -162916152 - L1MB7 LINE L1 -3536 3108 1198 7105 65 2 4 chr4 39412195 39413510 -162914837 - L1PA8 LINE L1 0 6172 4855 5301 252 78 21 chr4 39413510 39414776 -162913571 - L1MB7 LINE L1 -5446 1198 5 261 250 164 31 chr4 39414779 39414841 -162913506 + L2 LINE L2 3037 3089 -224 183 80 0 0 chr4 39414841 39414866 -162913481 + (TA)n Simple_repeat Simple_repeat 2 26 0 261 250 164 31 chr4 39414866 39414931 -162913416 + L2 LINE L2 3089 3181 -132 275 252 90 114 chr4 39415015 39415305 -162913042 + MLT1J LTR MaLR 99 381 -130 22 35 0 0 chr4 39415600 39415629 -162912718 + AT_rich Low_complexity Low_complexity 1 29 0 1455 105 22 4 chr4 39415937 39416165 -162912182 + L1PB1 LINE L1 5920 6151 0 24 0 0 0 chr4 39416167 39416191 -162912156 + AT_rich Low_complexity Low_complexity 1 24 0 34 72 0 0 chr4 39416952 39417021 -162911326 + AT_rich Low_complexity Low_complexity 1 69 0 564 317 54 18 chr4 39417100 39417324 -162911023 - MIR SINE MIR -7 255 24 737 251 158 43 chr4 39417387 39417849 -162910498 + MER113 DNA MER1_type? 4 518 -3 300 278 113 17 chr4 39417894 39418009 -162910338 + MIR SINE MIR 98 223 -39 428 331 12 54 chr4 39418274 39418440 -162909907 + MER91A DNA MER1_type 35 193 -3 384 215 101 108 chr4 39419212 39419370 -162908977 - MIR SINE MIR -41 221 65 2244 114 0 0 chr4 39420059 39420358 -162907989 - AluSx SINE Alu -13 299 1 654 201 34 98 chr4 39421381 39421615 -162906732 + LTR12 LTR ERV1 238 456 -258 513 348 58 5 chr4 39422192 39422416 -162905931 + MIR SINE MIR 18 253 -9 211 310 20 10 chr4 39422825 39422925 -162905422 + GA-rich Low_complexity Low_complexity 5 105 0 21 0 0 0 chr4 39423242 39423263 -162905084 + AT_rich Low_complexity Low_complexity 1 21 0 393 259 25 81 chr4 39424022 39424219 -162904128 + MIR SINE MIR 2 187 -75 1454 162 85 85 chr4 39424635 39425006 -162903341 + MER67C LTR ERV1 1 398 -242 260 263 132 9 chr4 39425067 39425181 -162903166 + MER67D LTR ERV1 384 511 -3 693 185 92 56 chr4 39425521 39425716 -162902631 - L2 LINE L2 0 3313 3112 954 149 80 5 chr4 39427054 39427242 -162901105 - L1MA9 LINE L1 0 6312 6111 1210 169 42 0 chr4 39427242 39427478 -162900869 + L1MA9 LINE L1 5878 6123 -189 1739 159 7 14 chr4 39427635 39427930 -162900417 - AluJo SINE Alu -9 303 11 23 0 0 0 chr4 39428203 39428226 -162900121 + AT_rich Low_complexity Low_complexity 1 23 0 575 242 114 0 chr4 39428301 39428433 -162899914 + MLT1J1 LTR MaLR 13 159 -287 540 250 121 1 chr4 39428482 39428628 -162899719 + MLT1J2 LTR MaLR 13 172 -237 767 313 68 26 chr4 39428663 39429047 -162899300 + MLT1J1 LTR MaLR 13 412 -34 1303 219 49 31 chr4 39430646 39430999 -162897348 - MLT1A1 LTR MaLR 0 365 3 193 226 113 19 chr4 39431009 39431062 -162897285 - L3 LINE CR1 -624 953 896 2023 131 3 0 chr4 39431064 39431370 -162896977 - AluSg SINE Alu 0 307 1 237 308 58 10 chr4 39431507 39431611 -162896736 - L1MC5 LINE L1 -1134 6827 6719 455 295 266 0 chr4 39431776 39431983 -162896364 + MIR SINE MIR 1 262 0 31 26 0 0 chr4 39432297 39432335 -162896012 + AT_rich Low_complexity Low_complexity 1 38 0 2251 107 3 0 chr4 39432765 39433065 -162895282 - AluSx SINE Alu -11 301 1 281 326 51 0 chr4 39433630 39433728 -162894619 + MIR3 SINE MIR 89 191 -17 181 83 56 0 chr4 39434708 39434744 -162893603 + (TA)n Simple_repeat Simple_repeat 1 38 0 901 225 23 28 chr4 39434785 39435003 -162893344 - MER20 DNA MER1_type 0 219 3 697 296 17 17 chr4 39435029 39435075 -162893272 + MIR SINE MIR 30 75 -187 480 105 0 70 chr4 39435075 39435161 -162893186 + MADE1 DNA Mariner 1 80 0 697 296 17 17 chr4 39435161 39435347 -162893000 + MIR SINE MIR 74 262 0 285 308 31 46 chr4 39436037 39436167 -162892180 - MER5B DNA MER1_type -50 128 1 394 333 0 0 chr4 39436266 39436377 -162891970 - L2 LINE L2 0 3272 3162 2207 218 26 2 chr4 39436379 39436848 -162891499 + MER67D LTR ERV1 1 480 -34 228 233 103 69 chr4 39436934 39437050 -162891297 - MER5A DNA MER1_type -69 120 1 2202 271 80 37 chr4 39437097 39437852 -162890495 + L1MC4 LINE L1 6925 7741 -301 240 35 0 0 chr4 39437852 39437881 -162890466 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2202 271 80 37 chr4 39437881 39438197 -162890150 + L1MC4 LINE L1 7741 8042 0 2334 77 23 0 chr4 39438628 39438928 -162889419 - AluSg SINE Alu -1 309 3 243 267 23 35 chr4 39439232 39439318 -162889029 + L2 LINE L2 3158 3242 -71 247 200 17 0 chr4 39439349 39439409 -162888938 + GA-rich Low_complexity Low_complexity 1 61 0 316 309 0 0 chr4 39439517 39439611 -162888736 + L1MC4 LINE L1 6614 6707 -1335 326 368 74 13 chr4 39440062 39440293 -162888054 - L2 LINE L2 -438 2876 2632 2940 15 0 0 chr4 39440370 39440713 -162887634 - L1P LINE L1 -949 5197 4855 3000 62 0 5 chr4 39440713 39441093 -162887254 + L1PA3 LINE L1 5773 6155 0 24 0 0 0 chr4 39442464 39442488 -162885859 + AT_rich Low_complexity Low_complexity 1 24 0 333 132 0 0 chr4 39442567 39442620 -162885727 - MLT1J LTR MaLR -39 472 420 315 339 85 16 chr4 39442681 39442870 -162885477 - MLT1J LTR MaLR -309 202 1 243 323 24 24 chr4 39444359 39444404 -162883943 - MLT1G1 LTR MaLR 0 595 551 1740 189 101 90 chr4 39444404 39444917 -162883430 + MLT2B1 LTR ERVL 1 519 -1 243 323 24 24 chr4 39444917 39444998 -162883349 - MLT1G1 LTR MaLR -43 552 469 462 300 104 72 chr4 39445314 39445831 -162882516 - L2 LINE L2 -789 2525 1992 1197 239 118 20 chr4 39446933 39447288 -162881059 - MSTD LTR MaLR -6 390 1 34 42 0 0 chr4 39447512 39447560 -162880787 + AT_rich Low_complexity Low_complexity 1 48 0 3244 167 18 70 chr4 39449333 39450057 -162878290 + LTR8 LTR ERV1 6 691 0 298 340 112 15 chr4 39450064 39450261 -162878086 + MIR SINE MIR 40 255 -7 476 256 42 84 chr4 39450310 39450501 -162877846 - MER5A DNA MER1_type -1 188 6 21 0 0 0 chr4 39450558 39450579 -162877768 + AT_rich Low_complexity Low_complexity 1 21 0 1370 228 46 11 chr4 39450792 39451143 -162877204 + MER31B LTR ERV1 1 363 -103 229 220 0 0 chr4 39451170 39451220 -162877127 + MER67B LTR ERV1 612 661 0 635 201 46 118 chr4 39451541 39451804 -162876543 + MLT1A1 LTR MaLR 1 244 -121 253 342 84 40 chr4 39451912 39452050 -162876297 - MLT1K LTR MaLR -8 580 449 1750 159 9 22 chr4 39452050 39452365 -162875982 + AluSx SINE Alu 1 311 -1 253 342 84 40 chr4 39452365 39452501 -162875846 - MLT1K LTR MaLR -139 449 294 1033 182 79 8 chr4 39452685 39453124 -162875223 + MER34 LTR ERV1 25 523 -19 796 254 151 15 chr4 39453315 39453587 -162874760 + L2 LINE L2 3000 3308 -5 180 442 0 17 chr4 39454143 39454263 -162874084 + MIR SINE MIR 18 135 -73 2003 138 31 0 chr4 39454730 39455020 -162873327 - AluSx SINE Alu -13 299 1 2886 125 7 0 chr4 39455748 39456203 -162872144 + L1MA1 LINE L1 5845 6302 0 331 140 168 28 chr4 39457261 39457297 -162871050 - L1MA9 LINE L1 -1 6311 6281 192 40 0 0 chr4 39457297 39457322 -162871025 + (TG)n Simple_repeat Simple_repeat 2 26 0 331 140 168 28 chr4 39457322 39457392 -162870955 - L1MA9 LINE L1 -31 6281 6190 1281 110 0 0 chr4 39457393 39457566 -162870781 + THE1B LTR MaLR 1 173 -191 52 0 0 16 chr4 39457576 39457608 -162870739 + AT_rich Low_complexity Low_complexity 1 33 -29 199 68 0 45 chr4 39457608 39457652 -162870695 + (TTAAA)n Simple_repeat Simple_repeat 5 46 0 52 0 0 16 chr4 39457652 39457682 -162870665 + AT_rich Low_complexity Low_complexity 33 62 0 459 178 34 0 chr4 39457694 39458165 -162870182 + (TA)n Simple_repeat Simple_repeat 1 487 0 1292 107 10 0 chr4 39458167 39458364 -162869983 + THE1B-int LTR MaLR 1382 1580 0 2422 115 34 14 chr4 39458364 39458721 -162869626 + THE1B LTR MaLR 1 364 0 405 115 23 58 chr4 39458729 39458816 -162869531 - L1MA9 LINE L1 -134 6178 6095 27 29 0 0 chr4 39459360 39459394 -162868953 + AT_rich Low_complexity Low_complexity 1 34 0 257 334 0 2 chr4 39460328 39460413 -162867934 + MIR SINE MIR 42 125 -83 3780 140 28 10 chr4 39460535 39461188 -162867159 - MER39 LTR ERV1 0 707 3 185 304 36 0 chr4 39461316 39461372 -162866975 + MIR SINE MIR 47 104 -104 300 318 18 0 chr4 39462183 39462293 -162866054 + MLT1J LTR MaLR 400 511 0 249 245 0 0 chr4 39462377 39462426 -162865921 + L2 LINE L2 3212 3260 -12 1272 240 108 68 chr4 39462570 39463115 -162865232 + MLT1F1 LTR MaLR 1 567 0 612 84 0 12 chr4 39464224 39464307 -162864040 - THE1B LTR MaLR -49 315 234 8587 93 24 10 chr4 39464309 39466346 -162862001 - L1PA7 LINE L1 0 6154 4103 301 262 120 71 chr4 39467341 39467524 -162860823 + HAL1b LINE L1 746 937 -411 290 177 32 0 chr4 39467551 39467613 -162860734 - MLT1A1 LTR MaLR -10 355 292 238 299 60 26 chr4 39467600 39467717 -162860630 - MLT1A1 LTR MaLR -333 124 4 * 2411 120 66 20 chr4 39468047 39468235 -162860112 + MSTA LTR MaLR 1 179 -249 2009 92 7 28 chr4 39468235 39468518 -162859829 + AluSq SINE Alu 16 292 -21 2411 120 66 20 chr4 39468518 39468738 -162859609 + MSTA LTR MaLR 179 428 0 2338 71 0 0 chr4 39469756 39470051 -162858296 - AluY SINE Alu -16 295 1 414 309 55 25 chr4 39470330 39470531 -162857816 - MIR SINE MIR -54 208 2 362 264 0 0 chr4 39471086 39471177 -162857170 + MIR SINE MIR 169 259 -3 345 275 55 0 chr4 39471197 39471306 -162857041 - MIR SINE MIR -47 215 101 9266 102 8 4 chr4 39471313 39472595 -162855752 - HSMAR1 DNA Mariner 0 1287 1 2128 125 7 0 chr4 39472883 39473179 -162855168 - AluSq SINE Alu -15 298 1 308 227 159 101 chr4 39473318 39473595 -162854752 - L2 LINE L2 0 3313 3021 239 308 13 0 chr4 39474244 39474322 -162854025 - MLT1L LTR MaLR -536 79 1 1055 119 0 0 chr4 39476998 39477149 -162851198 + AluSp/q SINE Alu 163 313 0 435 374 75 10 chr4 39477179 39477591 -162850756 + LTR16A LTR ERVL 9 447 -3 436 298 31 37 chr4 39477665 39477826 -162850521 + LTR16A LTR ERVL 147 306 -144 211 346 58 50 chr4 39478074 39478228 -162850119 + L2 LINE L2 2812 2970 -302 1885 192 14 27 chr4 39478228 39478598 -162849749 - MLT1A1 LTR MaLR 0 365 1 211 346 58 50 chr4 39478598 39478683 -162849664 + L2 LINE L2 2970 3053 -219 1766 137 0 0 chr4 39478802 39479050 -162849297 + AluSx SINE Alu 49 296 -16 237 33 0 0 chr4 39479569 39479599 -162848748 + (TC)n Simple_repeat Simple_repeat 1 30 0 833 200 28 0 chr4 39479601 39479746 -162848601 - MLT1A1 LTR MaLR -72 293 145 330 204 32 32 chr4 39479782 39479875 -162848472 - L1MC4 LINE L1 -1337 6705 6613 506 269 25 6 chr4 39480004 39480052 -162848295 - L1MA10 LINE L1 -3 6331 6284 2912 257 31 24 chr4 39480052 39481586 -162846761 - L1ME1 LINE L1 -44 6122 4571 2007 28 36 0 chr4 39481586 39481833 -162846514 + L1PA5 LINE L1 5895 6150 -4 2912 257 31 24 chr4 39481833 39482034 -162846313 - L1ME1 LINE L1 -1595 4571 4373 6270 134 32 8 chr4 39482052 39483672 -162844675 - L1MA1 LINE L1 -4 6298 4639 1379 191 24 42 chr4 39483685 39483881 -162844466 - L1MA1 LINE L1 -2451 3695 3506 2289 81 13 29 chr4 39483881 39484188 -162844159 - AluY SINE Alu -9 302 1 1379 191 24 42 chr4 39484188 39484326 -162844021 - L1MA1 LINE L1 -2640 3506 3367 * 1557 243 44 30 chr4 39484297 39484894 -162843453 - L1ME1 LINE L1 -1721 4425 3821 810 333 75 22 chr4 39484939 39485354 -162842993 - L2 LINE L2 -1 3312 2876 240 257 44 26 chr4 39485878 39485991 -162842356 + MER103 DNA DNA 9 123 -43 706 229 136 63 chr4 39486385 39486717 -162841630 + LTR18A LTR ERVL 1 356 -1 1336 230 40 9 chr4 39486977 39487485 -162840862 - MLT1E LTR MaLR 0 593 26 216 353 173 0 chr4 39487701 39487851 -162840496 + MIR SINE MIR 71 246 -16 381 301 10 70 chr4 39487980 39488179 -162840168 - L1ME2 LINE L1 -258 5906 5720 2087 135 48 22 chr4 39488196 39488551 -162839796 - THE1B LTR MaLR 0 364 1 9614 93 6 15 chr4 39488557 39488860 -162839487 - THE1B-int LTR MaLR -7 1573 1269 2808 13 0 0 chr4 39488860 39489166 -162839181 - AluYb8 SINE Alu -12 306 1 9614 93 6 15 chr4 39489166 39490443 -162837904 - THE1B-int LTR MaLR -311 1269 1 1514 122 7 28 chr4 39490443 39490751 -162837596 - THE1B LTR MaLR 0 364 1 434 151 93 0 chr4 39490990 39491076 -162837271 - MER81 DNA DNA 0 114 21 2306 165 31 13 chr4 39491204 39491759 -162836588 + L1MA4A LINE L1 5658 6283 -20 981 205 5 0 chr4 39492259 39492444 -162835903 - L1MB1 LINE L1 -80 6088 5903 2508 86 5 76 chr4 39492446 39492522 -162835825 - MER48 LTR ERV1 0 387 307 2284 75 0 0 chr4 39492522 39492817 -162835530 - AluY SINE Alu -15 296 2 2508 86 5 76 chr4 39492817 39493147 -162835200 - MER48 LTR ERV1 -80 307 10 2272 157 27 7 chr4 39493157 39493565 -162834782 - L1MB1 LINE L1 -267 5901 5486 416 122 27 0 chr4 39493586 39493660 -162834687 + L1MB1 LINE L1 6093 6168 0 462 18 0 0 chr4 39493702 39493757 -162834590 + (TA)n Simple_repeat Simple_repeat 2 56 0 22 35 0 0 chr4 39494586 39494615 -162833732 + AT_rich Low_complexity Low_complexity 1 29 0 426 303 53 43 chr4 39494870 39495170 -162833177 - MARNA DNA Mariner -206 380 78 2261 113 10 0 chr4 39495557 39495866 -162832481 - AluSx SINE Alu 0 312 1 284 308 110 14 chr4 39496145 39496291 -162832056 - MIR SINE MIR -50 212 53 509 296 111 18 chr4 39496917 39497197 -162831150 + MER90 LTR ERV1 212 517 -58 1445 197 33 16 chr4 39497283 39497587 -162830760 + AluJo SINE Alu 1 309 -3 408 71 0 0 chr4 39497874 39497930 -162830417 + (TA)n Simple_repeat Simple_repeat 1 56 0 1479 141 129 25 chr4 39497930 39498256 -162830091 + MER46B DNA MER2_type 1 235 -1 3539 194 87 8 chr4 39498661 39498710 -162829637 + MER21B LTR ERV1 1 45 -818 2104 123 14 0 chr4 39498710 39499003 -162829344 - AluSx SINE Alu -15 297 1 3539 194 87 8 chr4 39499003 39499668 -162828679 + MER21B LTR ERV1 45 771 -92 1445 228 6 10 chr4 39501044 39501355 -162826992 - AluJo SINE Alu -2 310 1 598 238 38 22 chr4 39501714 39501899 -162826448 - L1ME3A LINE L1 -239 5931 5744 1149 190 93 8 chr4 39501907 39502154 -162826193 - MLT1E3 LTR MaLR -1 623 356 340 321 95 24 chr4 39502155 39502650 -162825697 - L1MEc LINE L1 -4003 2718 2189 460 253 118 0 chr4 39502654 39502824 -162825523 - L1MEc LINE L1 -4579 2142 1953 815 119 56 0 chr4 39502847 39502973 -162825374 + AluSq/x SINE Alu 1 133 -179 1324 124 0 25 chr4 39502976 39503178 -162825169 + AluSg/x SINE Alu 97 293 -19 419 325 62 29 chr4 39503185 39503428 -162824919 - L1MEc LINE L1 -4776 1945 1695 845 150 0 14 chr4 39503593 39503733 -162824614 + FLAM_C SINE Alu 6 143 0 230 288 48 8 chr4 39503746 39503871 -162824476 - L1MEc LINE L1 -5111 1429 1300 24 32 0 0 chr4 39504698 39504729 -162823618 + AT_rich Low_complexity Low_complexity 1 31 0 407 278 71 17 chr4 39504824 39505161 -162823186 - L1MC5 LINE L1 -451 7510 7259 746 194 0 8 chr4 39505191 39505325 -162823022 - FLAM_A SINE Alu 0 133 1 956 220 28 60 chr4 39505336 39505765 -162822582 - L1MC5 LINE L1 -730 7231 6875 284 356 39 11 chr4 39505880 39506060 -162822287 - L1ME LINE L1 -522 5642 5458 * 910 255 88 17 chr4 39506058 39506352 -162821995 - L1ME1 LINE L1 -14 6152 5838 635 290 36 0 chr4 39506362 39506610 -162821737 - L1ME1 LINE L1 -1429 4717 4461 * 2653 121 25 119 chr4 39506608 39507087 -162821260 + L1PA3 LINE L1 5721 6154 -1 31 26 0 0 chr4 39507087 39507125 -162821222 + AT_rich Low_complexity Low_complexity 1 38 0 23 0 0 0 chr4 39507918 39507941 -162820406 + AT_rich Low_complexity Low_complexity 1 23 0 506 16 16 0 chr4 39508102 39508165 -162820182 + (TCTA)n Simple_repeat Simple_repeat 1 64 0 393 342 89 21 chr4 39508453 39508643 -162819704 - L2 LINE L2 0 3272 3070 5326 145 38 18 chr4 39509957 39510524 -162817823 - L1MA8 LINE L1 0 6291 5694 2829 89 54 12 chr4 39510524 39510950 -162817397 + MLT2A1 LTR ERVL 1 444 0 5326 145 38 18 chr4 39510950 39511377 -162816970 - L1MA8 LINE L1 -597 5694 5277 2600 11 0 0 chr4 39511730 39512054 -162816293 - AluY SINE Alu 0 326 3 2001 123 0 3 chr4 39512057 39512350 -162815997 - Harlequin LTR ERV1 -6604 292 1 1949 182 93 30 chr4 39512350 39512811 -162815536 - LTR2B LTR ERV1 0 490 1 1058 228 28 4 chr4 39513477 39513732 -162814615 + MLT1F1 LTR MaLR 307 567 0 2546 142 33 24 chr4 39514068 39514492 -162813855 + Tigger2a DNA MER2_type 1 428 -6 21 0 0 0 chr4 39515172 39515193 -162813154 + AT_rich Low_complexity Low_complexity 1 21 0 629 13 13 0 chr4 39515867 39515945 -162812402 + L1PA3 LINE L1 6076 6154 -1 31 26 0 0 chr4 39515945 39515983 -162812364 + AT_rich Low_complexity Low_complexity 1 38 0 23 0 0 0 chr4 39516776 39516799 -162811548 + AT_rich Low_complexity Low_complexity 1 23 0 506 16 16 0 chr4 39516960 39517023 -162811324 + (TCTA)n Simple_repeat Simple_repeat 1 64 0 393 342 89 21 chr4 39517311 39517501 -162810846 - L2 LINE L2 0 3272 3070 5326 145 38 18 chr4 39518814 39519381 -162808966 - L1MA8 LINE L1 0 6291 5694 2829 89 54 12 chr4 39519381 39519807 -162808540 + MLT2A1 LTR ERVL 1 444 0 5326 145 38 18 chr4 39519807 39520234 -162808113 - L1MA8 LINE L1 -597 5694 5277 2299 63 0 3 chr4 39520587 39520914 -162807433 - AluY SINE Alu 0 326 1 689 313 33 0 chr4 39520916 39521127 -162807220 + MIR SINE MIR 45 262 0 2367 220 44 22 chr4 39521170 39521413 -162806934 + MLT2B1 LTR ERVL 1 237 -283 4328 91 3 84 chr4 39521413 39522136 -162806211 + MER4A LTR ERV1 1 664 0 2367 220 44 22 chr4 39522136 39522393 -162805954 + MLT2B1 LTR ERVL 237 512 -8 268 221 65 0 chr4 39523006 39523083 -162805264 - HAL1 LINE L1 -167 2340 2259 700 242 6 12 chr4 39523253 39523414 -162804933 - MER5B DNA MER1_type -16 162 3 362 339 28 34 chr4 39524274 39524451 -162803896 - L2 LINE L2 -252 3061 2886 3455 170 26 5 chr4 39524671 39525334 -162803013 + L1MC1 LINE L1 5657 6333 0 600 206 46 105 chr4 39526021 39526240 -162802107 + MER63A DNA MER1_type 5 210 0 576 141 0 10 chr4 39526894 39526993 -162801354 + MER4A LTR ERV1 1 98 -566 1782 177 82 19 chr4 39526993 39527372 -162800975 + MER4A LTR ERV1 261 663 -1 1873 136 0 7 chr4 39527986 39528265 -162800082 + AluSx SINE Alu 16 292 -20 25 51 0 0 chr4 39529346 39529385 -162798962 + AT_rich Low_complexity Low_complexity 1 39 0 185 313 62 25 chr4 39529423 39529503 -162798844 + MIR SINE MIR 74 156 -106 2346 97 0 0 chr4 39529643 39529951 -162798396 - AluSx SINE Alu -4 308 1 21 0 0 0 chr4 39530253 39530274 -162798073 + AT_rich Low_complexity Low_complexity 1 21 0 1554 241 43 72 chr4 39530522 39531107 -162797240 + L1MCb LINE L1 3 570 -5475 1824 245 29 46 chr4 39531169 39532031 -162796316 + L1MCb LINE L1 553 1404 -4852 469 236 71 57 chr4 39532035 39532315 -162796032 - MER34B LTR ERV1 -3 562 279 5584 191 68 26 chr4 39532447 39533752 -162794595 + L1MC3 LINE L1 6411 7770 -15 255 217 0 0 chr4 39533881 39533941 -162794406 + (TA)n Simple_repeat Simple_repeat 2 61 0 452 300 17 44 chr4 39534037 39534330 -162794017 + L1MCb LINE L1 1346 1630 -4924 246 229 57 14 chr4 39534483 39534553 -162793794 - Zaphod DNA AcHobo -3550 481 409 489 60 24 24 chr4 39534577 39534660 -162793687 + (GAAA)n Simple_repeat Simple_repeat 2 84 0 247 345 28 100 chr4 39534916 39535235 -162793112 - L2 LINE L2 -12 3260 2965 35 0 0 0 chr4 39535516 39535551 -162792796 + AT_rich Low_complexity Low_complexity 1 35 0 441 277 9 0 chr4 39535555 39535667 -162792680 + MER2 DNA MER2_type 1 113 -232 14893 137 10 19 chr4 39535667 39539050 -162789297 + L1PA10 LINE L1 2717 6065 -103 2498 121 8 19 chr4 39539051 39539430 -162788917 + THE1C LTR MaLR 1 375 0 9642 122 43 1 chr4 39539432 39540953 -162787394 + THE1C-int LTR MaLR 3 1580 0 2323 114 50 8 chr4 39540953 39541313 -162787034 + THE1C LTR MaLR 1 375 0 738 86 19 0 chr4 39541313 39541418 -162786929 + L1PA10 LINE L1 6062 6168 0 4475 114 13 10 chr4 39541442 39542133 -162786214 + L1PA11 LINE L1 5475 6167 -7 628 156 41 0 chr4 39542137 39542259 -162786088 + MER2 DNA MER2_type 84 210 -135 321 272 14 95 chr4 39542767 39542914 -162785433 - MLT1A2 LTR MaLR -68 328 194 199 172 17 17 chr4 39542920 39542978 -162785369 + GA-rich Low_complexity Low_complexity 4 61 0 755 250 0 12 chr4 39542988 39543156 -162785191 - MLT1A2 LTR MaLR -188 186 21 213 368 53 0 chr4 39543207 39543321 -162785026 - MIR SINE MIR -123 139 20 327 326 93 50 chr4 39543339 39543906 -162784441 + L2 LINE L2 2403 3084 -188 375 297 25 69 chr4 39544013 39544211 -162784136 - MLT1J LTR MaLR 0 511 323 596 234 108 0 chr4 39544211 39544369 -162783978 + MER58A DNA MER1_type 1 175 -49 726 181 7 28 chr4 39544470 39544614 -162783733 - FLAM_C SINE Alu -2 141 1 717 269 65 29 chr4 39544635 39544880 -162783467 - MLT1J LTR MaLR -257 254 1 181 250 0 0 chr4 39544902 39544946 -162783401 + L2 LINE L2 3262 3305 -8 243 326 33 11 chr4 39546271 39546363 -162781984 + MIR SINE MIR 82 175 -87 244 233 0 0 chr4 39546582 39546642 -162781705 + (TCTA)n Simple_repeat Simple_repeat 3 62 0 25 0 0 0 chr4 39547623 39547648 -162780699 + AT_rich Low_complexity Low_complexity 1 25 0 27 29 0 0 chr4 39547848 39547882 -162780465 + AT_rich Low_complexity Low_complexity 1 34 0 629 64 41 35 chr4 39547882 39547890 -162780457 + (TTATA)n Simple_repeat Simple_repeat 1 7 -166 1783 209 14 3 chr4 39547890 39548249 -162780098 - L1PB4 LINE L1 -11 6145 5783 629 64 41 35 chr4 39548249 39548412 -162779935 + (TTATA)n Simple_repeat Simple_repeat 7 173 0 1970 130 0 7 chr4 39548420 39548728 -162779619 - L1PB4 LINE L1 -375 5781 5476 * 31065 114 14 56 chr4 39548723 39555138 -162773209 - L1PA7 LINE L1 -4 6150 12 6212 229 58 23 chr4 39555106 39556854 -162771493 - L1MC/D LINE L1 -669 5487 3612 * 2358 115 19 19 chr4 39556854 39557218 -162771129 + THE1B LTR MaLR 1 364 0 6212 229 58 23 chr4 39557218 39557767 -162770580 - L1MC/D LINE L1 -2544 3612 3084 2606 258 55 1 chr4 39557763 39558654 -162769693 - L1M4 LINE L1 -2192 3954 3016 * 275 331 26 52 chr4 39560337 39560491 -162767856 - MER5A DNA MER1_type 0 189 40 53 78 0 0 chr4 39561181 39561297 -162767050 + AT_rich Low_complexity Low_complexity 1 116 0 22 0 0 0 chr4 39561479 39561501 -162766846 + AT_rich Low_complexity Low_complexity 1 22 0 402 277 8 39 chr4 39561832 39561962 -162766385 + MER58B DNA MER1_type 216 341 0 885 159 77 0 chr4 39561970 39562165 -162766182 - L1MA9 LINE L1 0 6312 6103 2620 142 23 9 chr4 39562171 39562609 -162765738 + L1M2 LINE L1 5298 5741 -550 757 346 116 31 chr4 39563831 39564544 -162763803 + L3 LINE CR1 743 1516 -61 211 335 119 23 chr4 39564569 39564745 -162763602 + MIR SINE MIR 41 233 -29 290 331 181 0 chr4 39564824 39564951 -162763396 - MER5A DNA MER1_type -6 183 34 285 98 0 0 chr4 39565758 39565799 -162762548 + (TG)n Simple_repeat Simple_repeat 2 42 0 21 36 0 0 chr4 39565830 39565858 -162762489 + AT_rich Low_complexity Low_complexity 1 28 0 183 42 0 0 chr4 39566401 39566425 -162761922 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 289 273 111 10 chr4 39568012 39568111 -162760236 + MIR SINE MIR 5 113 -149 288 0 0 0 chr4 39568141 39568173 -162760174 + (TG)n Simple_repeat Simple_repeat 1 32 0 2322 104 0 0 chr4 39569033 39569340 -162759007 - AluSg SINE Alu -3 307 1 2118 94 13 13 chr4 39569763 39570072 -162758275 + AluSc SINE Alu 1 309 0 323 287 23 47 chr4 39570072 39570201 -162758146 - MIR SINE MIR -90 172 47 403 262 29 35 chr4 39571225 39571397 -162756950 + L2 LINE L2 3143 3313 0 22 0 0 0 chr4 39572050 39572072 -162756275 + AT_rich Low_complexity Low_complexity 1 22 0 183 42 0 0 chr4 39572824 39572848 -162755499 + (TG)n Simple_repeat Simple_repeat 2 25 0 194 229 14 0 chr4 39572865 39572935 -162755412 + CT-rich Low_complexity Low_complexity 3 73 0 3895 143 22 2 chr4 39573026 39573661 -162754686 - MER39B LTR ERV1 -4 649 2 627 285 89 26 chr4 39573662 39573964 -162754383 - LTR16B LTR ERVL -47 417 97 812 172 0 0 chr4 39574007 39574158 -162754189 + MER67D LTR ERV1 1 151 -363 680 159 7 36 chr4 39574158 39574318 -162754029 - FLAM_C SINE Alu 0 143 7 1125 170 85 18 chr4 39574333 39574557 -162753790 + MER67C LTR ERV1 165 403 -307 287 136 85 17 chr4 39574636 39574695 -162753652 + MER67D LTR ERV1 448 510 -4 281 331 88 53 chr4 39574735 39574998 -162753349 - L2 LINE L2 -1 3312 3041 383 307 64 14 chr4 39575099 39575239 -162753108 + MIR SINE MIR 109 255 -7 298 306 161 33 chr4 39576051 39576231 -162752116 + MIR SINE MIR 9 211 -51 1988 169 91 41 chr4 39577084 39577545 -162750802 - LTR2B LTR ERV1 0 490 7 37254 64 13 11 chr4 39577546 39582379 -162745968 - Harlequin LTR ERV1 0 6896 2054 8526 59 22 17 chr4 39582373 39583525 -162744822 - Harlequin LTR ERV1 -5477 1419 263 * 691 93 0 46 chr4 39583518 39583626 -162744721 - HERVE LTR ERV1 -7428 385 283 * 781 288 13 13 chr4 39583626 39583955 -162744392 - AluY SINE Alu 0 331 3 298 326 11 22 chr4 39583957 39584135 -162744212 - HERVE LTR ERV1 -6603 293 118 3034 278 71 31 chr4 39585819 39587140 -162741207 + L2 LINE L2 1888 3255 -58 9417 33 1 0 chr4 39588777 39589930 -162738417 - L1PA4 LINE L1 -2038 4108 2955 * 10688 27 5 1 chr4 39589928 39591962 -162736385 + L1PA4 LINE L1 4111 6152 -3 1903 252 50 25 chr4 39591977 39592683 -162735664 - L1M4 LINE L1 -1671 4475 3753 3542 95 2 0 chr4 39592685 39593171 -162735176 + L1PA12 LINE L1 5679 6165 -3 2502 264 58 9 chr4 39593381 39594360 -162733987 - L1M4 LINE L1 -2415 3731 2705 361 115 0 0 chr4 39594367 39594428 -162733919 - L1MB3 LINE L1 -28 6155 6095 2242 109 0 10 chr4 39594436 39594740 -162733607 - AluSq SINE Alu -12 301 1 3347 167 15 2 chr4 39594800 39595404 -162732943 - L1MB3 LINE L1 -24 6159 5548 854 101 101 0 chr4 39595421 39595560 -162732787 - AluSg/x SINE Alu -1 309 157 1404 84 0 0 chr4 39595956 39596134 -162732213 + AluY SINE Alu 1 178 -133 441 0 0 0 chr4 39596135 39596184 -162732163 + (CA)n Simple_repeat Simple_repeat 2 50 0 295 324 7 56 chr4 39596411 39596553 -162731794 - MIR3 SINE MIR -2 206 72 783 158 82 53 chr4 39596576 39596747 -162731600 + MLT1C LTR MaLR 6 181 -286 * 785 227 17 11 chr4 39596743 39596919 -162731428 + MLT1C LTR MaLR 291 467 0 21 0 0 0 chr4 39598296 39598317 -162730030 + AT_rich Low_complexity Low_complexity 1 21 0 196 238 12 12 chr4 39598333 39598413 -162729934 + (TA)n Simple_repeat Simple_repeat 2 81 0 492 292 111 37 chr4 39598635 39599482 -162728865 - L1MB3 LINE L1 -846 5300 4391 2708 133 12 9 chr4 39599501 39599928 -162728419 - LTR9B LTR ERV1 -86 558 131 1247 89 78 0 chr4 39599926 39600106 -162728241 - LTR9B LTR ERV1 -450 194 1 * 9560 114 17 11 chr4 39600107 39602623 -162725724 - HUERS-P3b LTR ERV1 -7 7411 4714 5533 92 6 43 chr4 39602615 39603448 -162724899 - HUERS-P3b LTR ERV1 -3544 3874 3073 * 2097 171 67 3 chr4 39603448 39603823 -162724524 + LTR8 LTR ERV1 1 399 -292 6816 117 18 9 chr4 39603823 39605582 -162722765 - HUERS-P3b LTR ERV1 -4760 2658 747 2181 58 54 0 chr4 39605588 39605866 -162722481 - AluY SINE Alu -18 293 1 693 155 39 71 chr4 39605882 39605912 -162722435 - HUERS-P3b LTR ERV1 -6859 559 530 2406 59 0 7 chr4 39605912 39606218 -162722129 - AluY SINE Alu -7 304 1 693 155 39 71 chr4 39606218 39606342 -162722005 - HUERS-P3b LTR ERV1 -6888 530 410 379 206 41 52 chr4 39606346 39606443 -162721904 - HUERS-P3b LTR ERV1 -7322 96 1 908 165 13 0 chr4 39606443 39606601 -162721746 - LTR9B LTR ERV1 0 644 485 370 330 21 0 chr4 39606629 39606817 -162721530 - L1MB3 LINE L1 -1778 4368 4177 292 266 206 16 chr4 39607477 39607661 -162720686 + MIR SINE MIR 44 262 0 14658 225 35 8 chr4 39608795 39614869 -162713478 + L1PA15 LINE L1 2 6814 -2 190 313 15 30 chr4 39615449 39615516 -162712831 - MIR SINE MIR -109 153 88 30 59 0 0 chr4 39615552 39615603 -162712744 + AT_rich Low_complexity Low_complexity 1 51 0 643 257 116 33 chr4 39616035 39616276 -162712071 + LTR40a LTR ERVL 257 517 -2 301 328 50 8 chr4 39616289 39616408 -162711939 + MLT1J LTR MaLR 86 209 -302 218 316 188 26 chr4 39616587 39616704 -162711643 - L2 LINE L2 0 3272 3137 1193 325 102 5 chr4 39616780 39617346 -162711001 + L2 LINE L2 1054 1674 -1640 383 370 59 31 chr4 39619715 39620069 -162708278 - L2 LINE L2 -74 3198 2835 2538 7 0 0 chr4 39620349 39620622 -162707725 - AluYb8 SINE Alu -11 307 35 202 83 0 56 chr4 39621177 39621213 -162707134 + L2 LINE L2 3020 3053 -260 825 245 5 42 chr4 39621455 39621671 -162706676 - MIR SINE MIR -10 252 45 246 356 33 0 chr4 39621778 39621868 -162706479 - MIR SINE MIR -83 125 33 428 351 5 22 chr4 39622057 39622279 -162706068 - MLT2E LTR ERVL 0 628 411 400 273 15 45 chr4 39622342 39622474 -162705873 - MLT2E LTR ERVL -469 159 32 928 238 80 27 chr4 39622514 39622945 -162705402 + MLT1E LTR MaLR 20 569 -24 1759 154 57 13 chr4 39623538 39623837 -162704510 + AluJo SINE Alu 1 312 0 417 293 76 57 chr4 39624411 39624780 -162703567 + MLT1I LTR MaLR 1 376 -33 1061 318 134 26 chr4 39625991 39626917 -162701430 - L2 LINE L2 -215 3057 2029 316 301 33 104 chr4 39630489 39630788 -162697559 + L2 LINE L2 2578 2855 -459 243 330 85 17 chr4 39630866 39630984 -162697363 + MLT1J2 LTR MaLR 83 208 -242 916 9 0 0 chr4 39631022 39631128 -162697219 + L1PA4 LINE L1 6047 6152 -3 350 333 14 35 chr4 39631324 39631468 -162696879 + L2 LINE L2 2897 3037 -235 22 56 0 0 chr4 39632111 39632147 -162696200 + AT_rich Low_complexity Low_complexity 1 36 0 216 0 0 0 chr4 39632324 39632348 -162695999 + (TTA)n Simple_repeat Simple_repeat 2 25 0 294 50 0 0 chr4 39633040 39633080 -162695267 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 655 295 68 57 chr4 39633082 39633451 -162694896 - L2 LINE L2 -15 3298 2926 374 318 95 7 chr4 39633745 39633893 -162694454 - MLT1J2 LTR MaLR -18 432 272 430 251 51 55 chr4 39634181 39634416 -162693931 - L1ME3A LINE L1 -219 5951 5718 349 216 144 0 chr4 39635088 39635185 -162693162 - L1ME3A LINE L1 -584 5578 5468 512 117 26 0 chr4 39635370 39635447 -162692900 - THE1C LTR MaLR -296 79 1 22 70 0 0 chr4 39636088 39636131 -162692216 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr4 39636401 39636423 -162691924 + AT_rich Low_complexity Low_complexity 1 22 0 5031 133 48 10 chr4 39637070 39638021 -162690326 - L1PB3 LINE L1 -1 6153 5171 4100 219 22 5 chr4 39638016 39638843 -162689504 + L1PBb LINE L1 130 970 -5234 * 306 262 12 0 chr4 39639057 39639141 -162689206 + (TA)n Simple_repeat Simple_repeat 2 86 0 262 354 0 0 chr4 39639452 39639534 -162688813 + MIR3 SINE MIR 82 163 -45 33715 80 5 14 chr4 39639764 39640587 -162687760 - L1PA6 LINE L1 -10 6144 5315 2428 87 0 0 chr4 39640587 39640897 -162687450 + AluY SINE Alu 1 310 -1 33715 80 5 14 chr4 39640897 39645658 -162682689 - L1PA6 LINE L1 -839 5315 606 335 272 79 90 chr4 39645687 39645966 -162682381 + L2 LINE L2 3025 3300 -13 544 297 110 65 chr4 39646601 39647018 -162681329 - MLT1J LTR MaLR -75 436 1 1343 225 95 54 chr4 39647631 39648128 -162680219 + LTR40a LTR ERVL 3 519 0 318 87 0 0 chr4 39649532 39649578 -162678769 + (TG)n Simple_repeat Simple_repeat 1 46 0 27 0 0 0 chr4 39649868 39649895 -162678452 + AT_rich Low_complexity Low_complexity 1 27 0 360 262 191 49 chr4 39650841 39651066 -162677281 + MIR SINE MIR 3 259 -3 2619 158 14 9 chr4 39651471 39651895 -162676452 - MSTB LTR MaLR 0 426 1 853 166 13 0 chr4 39652999 39653150 -162675197 - L1PA16 LINE L1 -4 6162 6010 2016 116 0 3 chr4 39653550 39653835 -162674512 + AluSx SINE Alu 17 300 -12 228 244 122 37 chr4 39654028 39654110 -162674237 - L2 LINE L2 -5 3267 3179 302 294 86 25 chr4 39656115 39656278 -162672069 - MIR SINE MIR -53 209 37 548 323 85 38 chr4 39656671 39657073 -162671274 - L2 LINE L2 -36 3277 2804 806 294 50 32 chr4 39657086 39657426 -162670921 - LTR16B LTR ERVL -24 440 95 814 207 148 17 chr4 39657545 39657782 -162670565 - L2 LINE L2 -510 2804 2537 200 244 0 0 chr4 39658315 39658356 -162669991 + T-rich Low_complexity Low_complexity 1 41 0 284 348 35 0 chr4 39658475 39658590 -162669757 + MLT1H LTR MaLR 12 130 -419 2882 3 0 0 chr4 39659012 39659330 -162669017 + AluYb8 SINE Alu 1 318 0 2900 72 5 8 chr4 39659330 39659384 -162668963 + L1P1 LINE L1 5294 5347 -808 4105 24 0 0 chr4 39659384 39659852 -162668495 - L1PA3 LINE L1 -1 6154 5687 2900 72 5 8 chr4 39659852 39660188 -162668159 + L1PA3 LINE L1 5347 5683 -472 411 251 80 31 chr4 39660310 39660473 -162667874 + MIR SINE MIR 92 262 0 895 231 17 22 chr4 39662604 39662835 -162665512 - MSTD LTR MaLR 0 396 196 864 156 0 0 chr4 39662847 39663027 -162665320 + GA-rich Low_complexity Low_complexity 1 180 0 536 286 0 7 chr4 39663055 39663195 -162665152 - MSTD LTR MaLR -257 139 1 4569 45 0 0 chr4 39663299 39663854 -162664493 - L1P LINE L1 -4038 2108 1554 326 245 81 72 chr4 39664448 39664864 -162663483 - L1MCc LINE L1 -4955 1468 1163 534 99 0 0 chr4 39665749 39665840 -162662507 + (GA)n Simple_repeat Simple_repeat 1 91 0 1263 95 0 11 chr4 39667122 39667301 -162661046 - HERVK9 LTR ERVK -132 5784 5608 6746 82 14 0 chr4 39667368 39668222 -162660125 - HERVK9 LTR ERVK -282 5634 4769 288 239 0 30 chr4 39672024 39672091 -162656256 - MER81 DNA DNA -27 87 23 1268 277 101 36 chr4 39673027 39673721 -162654626 - MER21B LTR ERV1 -116 747 9 6720 27 0 1 chr4 39674032 39674803 -162653544 + L1P LINE L1 3559 4330 -1816 2287 78 3 3 chr4 39674803 39675111 -162653236 - AluYb8 SINE Alu -10 308 1 648 214 18 80 chr4 39675112 39675336 -162653011 - L1M4 LINE L1 -3319 2827 2618 * 208 272 0 52 chr4 39676554 39676727 -162651620 + (CCTG)n Simple_repeat Simple_repeat 4 167 0 1290 68 0 0 chr4 39678242 39678405 -162649942 - L1P3 LINE L1 -661 5511 5349 340 163 40 25 chr4 39678481 39678568 -162649779 - MLT1J2 LTR MaLR -10 440 303 270 243 68 61 chr4 39678671 39678819 -162649528 - MLT1I LTR MaLR -241 168 20 1065 142 117 95 chr4 39678928 39679203 -162649144 + MLT1A1 LTR MaLR 1 332 -64 1593 163 24 10 chr4 39679203 39679492 -162648855 - AluJb SINE Alu -15 297 5 1065 142 117 95 chr4 39679492 39679559 -162648788 + MLT1A1 LTR MaLR 332 396 0 309 231 123 23 chr4 39679622 39679752 -162648595 + MLT1C LTR MaLR 10 152 -315 480 279 61 5 chr4 39680073 39680270 -162648077 + L1MCc LINE L1 23 230 -6193 322 314 46 13 chr4 39680301 39680454 -162647893 + L1MCc LINE L1 398 555 -5868 1267 273 123 28 chr4 39680494 39681128 -162647219 + L1MCc LINE L1 658 1351 -5072 2005 117 0 3 chr4 39682046 39682346 -162646001 - AluSq SINE Alu -14 299 1 1576 219 35 33 chr4 39682982 39683438 -162644909 + MLT1C LTR MaLR 6 462 -5 392 266 30 0 chr4 39684778 39684927 -162643420 + MIR SINE MIR 17 171 -66 889 247 29 41 chr4 39685266 39685582 -162642765 - MLT1E2 LTR MaLR -37 589 278 629 238 63 120 chr4 39685758 39686107 -162642240 - MLT1C LTR MaLR 0 390 62 25 0 0 0 chr4 39687036 39687061 -162641286 + AT_rich Low_complexity Low_complexity 1 25 0 341 22 22 0 chr4 39687186 39687232 -162641115 + (CA)n Simple_repeat Simple_repeat 1 47 0 1834 136 176 16 chr4 39687332 39687701 -162640646 + MSTA LTR MaLR 1 428 0 2449 169 21 9 chr4 39688688 39689119 -162639228 - MER50 LTR ERV1 0 734 299 2281 182 92 25 chr4 39689119 39689596 -162638751 - LTR22 LTR ERVK 0 509 1 763 75 0 0 chr4 39689607 39689700 -162638647 - MER50 LTR ERV1 -444 290 198 1550 112 70 0 chr4 39689802 39690043 -162638304 + MSTA LTR MaLR 171 428 0 308 312 19 32 chr4 39690907 39691064 -162637283 - MER112 DNA MER1_type -103 157 3 323 43 0 22 chr4 39691209 39691255 -162637092 + (TG)n Simple_repeat Simple_repeat 2 46 0 1245 122 0 12 chr4 39691734 39691906 -162636441 - AluY SINE Alu -141 170 1 2144 128 3 0 chr4 39692103 39692400 -162635947 - AluJb SINE Alu -14 298 1 335 249 158 45 chr4 39694402 39694579 -162633768 - Charlie7 DNA MER1_type -541 2071 1875 3455 101 32 22 chr4 39696140 39696646 -162631701 + MER9 LTR ERVK 1 511 0 263 282 13 0 chr4 39698111 39698189 -162630158 - L2 LINE L2 -21 3251 3173 715 235 117 60 chr4 39699330 39699765 -162628582 - MLT1C LTR MaLR 0 467 1 247 285 168 19 chr4 39700444 39700700 -162627647 - MLT1J2 LTR MaLR -125 325 32 590 224 91 12 chr4 39700868 39701033 -162627314 + MER45A DNA AcHobo 1 178 0 767 319 94 32 chr4 39701620 39702143 -162626204 - LTR67 LTR ERVL -1 556 2 754 299 104 42 chr4 39702367 39702960 -162625387 + L2 LINE L2 2635 3271 -42 2666 74 6 0 chr4 39704986 39705324 -162623023 - THE1A LTR MaLR -15 340 1 201 280 0 0 chr4 39706237 39706287 -162622060 - L2 LINE L2 -4 3268 3219 2700 30 0 0 chr4 39707054 39707352 -162620995 + AluY SINE Alu 1 298 -13 731 334 31 26 chr4 39708189 39708539 -162619808 + MLT1I LTR MaLR 9 360 -49 4436 209 22 44 chr4 39708539 39710532 -162617815 - L1MB8 LINE L1 -13 6165 4217 1754 111 0 24 chr4 39710535 39710788 -162617559 + AluSq SINE Alu 35 281 -32 271 0 51 0 chr4 39710788 39710827 -162617520 + (CAAAA)n Simple_repeat Simple_repeat 5 45 0 240 186 0 0 chr4 39710849 39710892 -162617455 + MLT1I LTR MaLR 354 396 -13 269 367 86 0 chr4 39711828 39712019 -162616328 - MIR SINE MIR -21 241 35 293 313 21 0 chr4 39712477 39712573 -162615774 + MIR SINE MIR 56 153 -109 617 300 8 34 chr4 39712761 39713028 -162615319 + MIR SINE MIR 3 262 0 207 188 0 0 chr4 39713028 39713076 -162615271 + (CTA)n Simple_repeat Simple_repeat 2 49 0 363 44 0 0 chr4 39713379 39713424 -162614923 + (TG)n Simple_repeat Simple_repeat 1 45 0 319 288 42 17 chr4 39714247 39714365 -162613982 + LTR67 LTR ERVL 428 548 -9 2589 126 0 6 chr4 39714516 39714882 -162613465 - THE1B LTR MaLR 0 364 1 37 76 0 0 chr4 39715661 39715740 -162612607 + AT_rich Low_complexity Low_complexity 1 79 0 266 251 46 24 chr4 39716542 39716641 -162611706 + MIR SINE MIR 45 145 -63 21 57 0 0 chr4 39717198 39717233 -162611114 + AT_rich Low_complexity Low_complexity 1 35 0 376 273 61 20 chr4 39718985 39719084 -162609263 + MIR SINE MIR 25 127 -81 419 265 86 0 chr4 39719156 39719273 -162609074 - MIR SINE MIR -101 161 35 399 41 0 0 chr4 39719607 39719656 -162608691 + (TG)n Simple_repeat Simple_repeat 2 50 0 2342 98 0 0 chr4 39724823 39725119 -162603228 - AluSq SINE Alu -17 296 1 210 297 8 55 chr4 39725191 39725319 -162603028 - MIR SINE MIR -78 184 63 271 298 12 0 chr4 39725665 39725749 -162602598 - L3 LINE CR1 -6 1571 1487 298 185 37 49 chr4 39726041 39726122 -162602225 - MER46C DNA MER2_type 0 338 259 892 150 96 0 chr4 39726207 39726374 -162601973 + MER3 DNA MER1_type 1 183 -26 311 247 0 130 chr4 39726407 39726553 -162601794 - MER46C DNA MER2_type -201 137 11 243 0 0 0 chr4 39727369 39727396 -162600951 + (CA)n Simple_repeat Simple_repeat 2 28 0 738 295 31 0 chr4 39727587 39727814 -162600533 + MIR SINE MIR 29 262 0 2015 150 5 57 chr4 39727939 39728202 -162600145 - MER7A DNA MER2_type -2692 346 108 2100 113 14 14 chr4 39728202 39728494 -162599853 + AluSx SINE Alu 1 292 -20 2015 150 5 57 chr4 39728494 39728597 -162599750 - MER7A DNA MER2_type -2930 108 1 388 268 8 49 chr4 39729047 39729170 -162599177 - L2 LINE L2 0 3313 3196 1004 250 130 55 chr4 39729673 39730210 -162598137 - MLT1H1 LTR MaLR -2 553 1 342 145 10 0 chr4 39730952 39731016 -162597331 + MLT1H1 LTR MaLR 496 551 -4 2014 80 21 3 chr4 39731135 39731422 -162596925 + L1PA13 LINE L1 5869 6160 -3 248 227 106 0 chr4 39733311 39733377 -162594970 + MER117 DNA MER1_type 75 147 -50 626 228 150 43 chr4 39734093 39734536 -162593811 + MLT1G1 LTR MaLR 60 622 -2 418 292 43 0 chr4 39734619 39734780 -162593567 + MIR SINE MIR 90 257 -5 234 217 50 0 chr4 39736362 39736422 -162591925 + MIR SINE MIR 74 136 -126 191 176 0 0 chr4 39736610 39736644 -162591703 + L2 LINE L2 3272 3305 -8 350 276 110 23 chr4 39737408 39737593 -162590754 + MIR3 SINE MIR 6 203 -5 420 302 133 13 chr4 39738118 39738343 -162590004 + MIR SINE MIR 6 257 -5 221 309 0 0 chr4 39738747 39738815 -162589532 - L2 LINE L2 -13 3300 3233 863 272 40 45 chr4 39738842 39739217 -162589130 - L2 LINE L2 -68 3245 2873 1021 134 37 0 chr4 39739529 39739693 -162588654 - L1M2 LINE L1 -739 5573 5404 576 263 64 20 chr4 39740614 39740865 -162587482 + MIR SINE MIR 1 262 0 2171 159 52 109 chr4 39742599 39743133 -162585214 - MLT1D LTR MaLR -1 504 1 551 286 78 68 chr4 39743398 39743797 -162584550 - MLT1K LTR MaLR -3 585 183 190 336 38 69 chr4 39743958 39744089 -162584258 + L2 LINE L2 3138 3264 -8 188 395 59 52 chr4 39745455 39745761 -162582586 + L2 LINE L2 2948 3255 -17 278 344 31 8 chr4 39745948 39746076 -162582271 - L2 LINE L2 -607 2707 2577 2379 210 125 31 chr4 39746592 39747419 -162580928 - L1ME2 LINE L1 -1 6163 5258 715 164 0 0 chr4 39747688 39747804 -162580543 + L1PA12 LINE L1 11 126 -7455 3485 263 66 53 chr4 39747811 39750089 -162578258 - L1M4 LINE L1 -825 6132 3825 410 248 35 0 chr4 39750085 39750198 -162578149 - L1M4 LINE L1 -3404 3553 3437 * 1618 233 139 43 chr4 39750226 39750476 -162577871 - L1M4 LINE L1 -4606 2353 2128 24827 33 15 48 chr4 39750476 39754354 -162573993 + L1PA4 LINE L1 2324 6155 0 1618 233 139 43 chr4 39754354 39755175 -162573172 - L1M4 LINE L1 -4831 2128 1206 297 296 61 0 chr4 39755700 39755798 -162572549 - HsTC2 DNA Tc2 -1794 104 1 2931 160 100 6 chr4 39757264 39757813 -162570534 - MER6A DNA MER2_type 0 605 5 847 303 124 13 chr4 39757819 39758278 -162570069 - LTR33 LTR ERVL 0 521 12 214 396 31 10 chr4 39758561 39758657 -162569690 - L2 LINE L2 -20 3252 3155 580 295 17 6 chr4 39758765 39758938 -162569409 - MIR SINE MIR -49 213 39 223 307 43 57 chr4 39759960 39760100 -162568247 + MIR SINE MIR 82 219 -43 * 237 266 151 45 chr4 39760097 39760296 -162568051 - MIR SINE MIR -37 225 6 1629 209 19 48 chr4 39761264 39761638 -162566709 - MLT1A1 LTR MaLR 0 365 3 21 36 0 0 chr4 39762655 39762683 -162565664 + AT_rich Low_complexity Low_complexity 1 28 0 502 300 85 14 chr4 39763787 39764010 -162564337 + MIR SINE MIR 20 258 -4 6178 126 8 8 chr4 39764076 39765013 -162563334 + L1P3 LINE L1 1 937 -4938 3386 91 21 2 chr4 39765013 39765487 -162562860 + L1PA8A LINE L1 5633 6115 -16 40 59 0 0 chr4 39766194 39766262 -162562085 + AT_rich Low_complexity Low_complexity 1 68 0 315 252 49 14 chr4 39766601 39766744 -162561603 - L1MC4 LINE L1 -1 8041 7894 704 254 14 28 chr4 39766860 39767073 -162561274 - L1ME2 LINE L1 -10 6154 5945 201 171 0 24 chr4 39767380 39767421 -162560926 - MIR SINE MIR -5 257 218 522 310 94 66 chr4 39767523 39767949 -162560398 - L2 LINE L2 -15 3257 2820 29 0 0 0 chr4 39768869 39768898 -162559449 + AT_rich Low_complexity Low_complexity 1 29 0 1557 211 54 20 chr4 39769428 39769779 -162558568 + MLT1A1 LTR MaLR 1 363 -2 1989 154 0 10 chr4 39769892 39770204 -162558143 - MER1B DNA MER1_type -30 309 1 249 355 112 42 chr4 39771978 39771998 -162556349 - L3 LINE CR1 -5 1572 1555 2547 131 51 24 chr4 39771998 39772449 -162555898 - MER4C LTR ERV1 -2 463 1 249 355 112 42 chr4 39772449 39772642 -162555705 - L3 LINE CR1 -22 1555 1344 3018 194 42 37 chr4 39773087 39773598 -162554749 - MER82 DNA MER2_type 0 653 137 2710 156 11 7 chr4 39773598 39774060 -162554287 + L1PB3 LINE L1 5690 6153 -1 3018 194 42 37 chr4 39774060 39774197 -162554150 - MER82 DNA MER2_type -516 137 2 2004 230 122 29 chr4 39774197 39774338 -162554009 - L1MC4 LINE L1 -13 8029 7902 1315 196 149 10 chr4 39774338 39774639 -162553708 + MER2 DNA MER2_type 1 343 -1 2004 230 122 29 chr4 39774639 39775146 -162553201 - L1MC4 LINE L1 -140 7902 7321 1731 242 58 42 chr4 39775151 39775701 -162552646 - MER90 LTR ERV1 -11 564 6 256 258 0 16 chr4 39775748 39775810 -162552537 + (TAGG)n Simple_repeat Simple_repeat 2 62 0 659 210 200 0 chr4 39775810 39776010 -162552337 + L1MC4 LINE L1 7093 7332 -710 368 329 79 64 chr4 39777163 39777491 -162550856 + L2 LINE L2 2854 3186 -86 689 263 85 60 chr4 39778247 39778963 -162549384 - L1MEd LINE L1 -4723 1587 813 5899 164 39 10 chr4 39779115 39781211 -162547136 - L1MA5 LINE L1 -62 6940 4790 1130 190 117 70 chr4 39781211 39781569 -162546778 - THE1C LTR MaLR 0 375 1 6943 137 41 6 chr4 39781569 39782684 -162545663 - THE1C-int LTR MaLR 0 1580 427 5290 196 59 30 chr4 39782713 39783951 -162544396 - L1MA5 LINE L1 -2153 4695 3413 2078 103 7 13 chr4 39783951 39784252 -162544095 + AluSc SINE Alu 1 299 -10 5290 196 59 30 chr4 39784252 39784393 -162543954 - L1MA5 LINE L1 -3435 3413 3277 * 6028 236 73 97 chr4 39784364 39787163 -162541184 - L1MA5 LINE L1 -4106 2743 11 413 329 52 73 chr4 39787168 39787593 -162540754 - L1MEd LINE L1 -5702 417 2 4140 243 112 42 chr4 39787716 39787843 -162540504 - L1M4c LINE L1 -1994 4963 4846 18259 33 4 0 chr4 39787843 39790823 -162537524 - L1PA3 LINE L1 0 6155 3168 4140 243 112 42 chr4 39790823 39790895 -162537452 - L1M4c LINE L1 -2111 4846 4780 1995 121 4 0 chr4 39790895 39791206 -162537141 - AluSg SINE Alu 0 312 1 4140 243 112 42 chr4 39791206 39794200 -162534147 - L1M4c LINE L1 -2177 4780 1206 229 260 85 102 chr4 39794265 39794511 -162533836 - L1M4c LINE L1 -5662 1193 952 264 259 80 59 chr4 39794782 39794990 -162533357 - L1M4c LINE L1 -6320 535 16 2231 104 6 19 chr4 39795220 39795536 -162532811 - AluSq SINE Alu -1 312 1 187 333 0 14 chr4 39796405 39796474 -162531873 + MIR SINE MIR 60 127 -81 25 100 0 0 chr4 39796614 39796664 -162531683 + GC_rich Low_complexity Low_complexity 1 50 0 23 0 0 0 chr4 39797090 39797113 -162531234 + AT_rich Low_complexity Low_complexity 1 23 0 906 225 25 6 chr4 39797117 39797317 -162531030 - MER33 DNA MER1_type -259 65 1 26 0 0 0 chr4 39797453 39797479 -162530868 + AT_rich Low_complexity Low_complexity 1 26 0 2112 84 11 21 chr4 39797509 39797794 -162530553 + AluSq SINE Alu 1 282 -31 4177 170 11 4 chr4 39798096 39798819 -162529528 - L1P3 LINE L1 -5147 728 1 225 304 82 30 chr4 39798913 39799048 -162529299 - MIR SINE MIR -38 224 83 1600 211 54 20 chr4 39799624 39799975 -162528372 + MLT1A1 LTR MaLR 1 363 -2 2019 154 0 10 chr4 39800088 39800400 -162527947 - MER1B DNA MER1_type -30 309 1 4571 203 21 57 chr4 39801112 39802620 -162525727 - L1PB3 LINE L1 -129 6025 4585 342 265 143 7 chr4 39802679 39802826 -162525521 + MLT1I LTR MaLR 5 171 -238 290 264 23 11 chr4 39802986 39803073 -162525274 + MLT1I LTR MaLR 322 409 0 248 227 106 0 chr4 39803962 39804028 -162524319 - MER117 DNA MER1_type -50 147 75 520 334 164 18 chr4 39805213 39805653 -162522694 - L2 LINE L2 -345 2969 2466 556 323 23 5 chr4 39805778 39805998 -162522349 + MIR SINE MIR 15 238 -24 2558 138 35 3 chr4 39806001 39806513 -162521834 + L1P4 LINE L1 5148 5669 -497 1568 115 5 0 chr4 39806629 39806877 -162521470 + AluSg/x SINE Alu 66 314 0 332 135 40 14 chr4 39806877 39806951 -162521396 + L1M4 LINE L1 3953 4028 -2118 * 15560 44 3 15 chr4 39806949 39808926 -162519421 + L1P LINE L1 3168 5120 -1026 576 263 64 20 chr4 39810180 39810431 -162517916 - MIR SINE MIR 0 262 1 530 188 127 30 chr4 39861119 39861316 -162467031 + Charlie5 DNA MER1_type 2362 2577 -35 2247 165 105 0 chr4 39861402 39861784 -162466563 - MSTB LTR MaLR -2 424 3 409 341 112 31 chr4 39861790 39862077 -162466270 - L2 LINE L2 -924 2390 2081 18912 102 20 2 chr4 39862591 39865420 -162462927 - L1P LINE L1 -2165 3981 1104 198 295 76 9 chr4 39865525 39865630 -162462717 + MIR SINE MIR 148 259 -3 224 340 53 40 chr4 39865648 39865798 -162462549 + L3 LINE CR1 1382 1533 -44 203 250 0 0 chr4 39867016 39867064 -162461283 + MIR SINE MIR 157 204 -58 5128 195 23 30 chr4 39867809 39868988 -162459359 + L1 LINE L1 3284 4453 -1693 6122 72 5 5 chr4 39869089 39869865 -162458482 + L1PA7 LINE L1 5379 6154 0 261 240 22 112 chr4 39869925 39870104 -162458243 + L1MC5 LINE L1 7764 7926 -35 523 251 37 59 chr4 39870515 39870702 -162457645 - MIR SINE MIR 0 262 80 296 287 106 0 chr4 39870971 39871065 -162457282 + MIR SINE MIR 94 197 -65 2423 77 0 0 chr4 39871154 39871452 -162456895 + AluY SINE Alu 1 298 -13 231 203 40 0 chr4 39872032 39872106 -162456241 + (TA)n Simple_repeat Simple_repeat 2 78 0 5070 88 16 22 chr4 39872152 39872847 -162455500 + L1PB1 LINE L1 5460 6150 -1 25 75 0 0 chr4 39872847 39872900 -162455447 + AT_rich Low_complexity Low_complexity 1 53 0 253 273 27 36 chr4 39872920 39873051 -162455296 + L1M4 LINE L1 5699 5828 -344 3559 164 73 32 chr4 39873324 39874109 -162454238 + L1MC3 LINE L1 6284 7100 -685 318 286 51 0 chr4 39874123 39874221 -162454126 + MLT1F1 LTR MaLR 35 137 -430 635 212 68 7 chr4 39874222 39874368 -162453979 + L1MC3 LINE L1 7200 7354 -431 2223 69 20 33 chr4 39874385 39874691 -162453656 - L1P3 LINE L1 -489 5665 5364 1094 160 10 0 chr4 39874686 39874892 -162453455 + L1P LINE L1 4696 4903 -1243 * 629 261 85 28 chr4 39875709 39875885 -162452462 - MER5A DNA MER1_type 0 189 4 1350 152 38 60 chr4 39875890 39876026 -162452321 + AluJo SINE Alu 1 138 -174 312 27 0 0 chr4 39876026 39876063 -162452284 + (TAA)n Simple_repeat Simple_repeat 2 38 0 1350 152 38 60 chr4 39876063 39876241 -162452106 + AluJo SINE Alu 138 308 -4 216 0 0 0 chr4 39877543 39877567 -162450780 + (CCG)n Simple_repeat Simple_repeat 1 24 0 200 154 26 51 chr4 39879809 39879848 -162448499 - L2 LINE L2 -620 2694 2657 428 143 13 0 chr4 39880625 39880702 -162447645 + LOR1a LTR ERV1 231 308 -189 991 153 158 18 chr4 39880715 39880943 -162447404 + LOR1a LTR ERV1 238 497 0 433 305 98 66 chr4 39881016 39881321 -162447026 + L2 LINE L2 2935 3249 -23 555 283 0 13 chr4 39882098 39882250 -162446097 + MIR SINE MIR 113 262 0 297 287 4 63 chr4 39882961 39883099 -162445248 - MIR SINE MIR -80 182 53 25 0 0 0 chr4 39883282 39883307 -162445040 + AT_rich Low_complexity Low_complexity 1 25 0 336 305 68 0 chr4 39885012 39885130 -162443217 - MIR SINE MIR -109 153 28 223 271 112 0 chr4 39885181 39885288 -162443059 - L3 LINE CR1 -251 1326 1208 550 286 106 5 chr4 39885308 39885507 -162442840 + L2 LINE L2 2565 2783 -531 714 271 107 57 chr4 39885661 39886044 -162442303 + L2 LINE L2 2836 3237 -76 482 218 213 11 chr4 39888493 39888667 -162439680 - MER3 DNA MER1_type 0 209 1 7779 88 9 12 chr4 39889106 39890411 -162437936 + L1P3 LINE L1 741 2043 -4418 203 289 51 83 chr4 39891235 39891391 -162436956 + L2 LINE L2 2883 3033 -239 * 634 263 74 131 chr4 39891378 39891591 -162436756 + L2 LINE L2 2827 3050 -263 3954 62 8 0 chr4 39891591 39892074 -162436273 - L1PA7 LINE L1 0 6154 5668 284 81 0 0 chr4 39892074 39892111 -162436236 + L1P3 LINE L1 1375 1411 -5050 634 263 74 131 chr4 39892111 39892373 -162435974 + L2 LINE L2 3048 3310 -3 204 260 0 115 chr4 39892402 39892498 -162435849 + L2 LINE L2 3010 3094 -178 769 266 133 42 chr4 39892526 39892909 -162435438 - L2 LINE L2 0 3313 2896 402 153 0 0 chr4 39892909 39892968 -162435379 + Alu SINE Alu 235 293 -19 236 289 284 5 chr4 39892971 39893179 -162435168 - L2 LINE L2 -413 2901 2636 296 305 67 0 chr4 39893981 39894086 -162434261 + L2 LINE L2 3144 3255 -17 12904 145 30 25 chr4 39894921 39897154 -162431193 + L1M1 LINE L1 15 2258 -5307 180 315 208 0 chr4 39897747 39897877 -162430470 - L2 LINE L2 -558 2756 2600 685 275 0 25 chr4 39899085 39899245 -162429102 - MIR3 SINE MIR -21 187 32 1570 216 102 30 chr4 39899370 39899870 -162428477 - MLT1H LTR MaLR -1 548 13 424 302 60 28 chr4 39899893 39900075 -162428272 - MIR SINE MIR -61 201 14 547 209 9 0 chr4 39900583 39900688 -162427659 + MER5A DNA MER1_type 4 109 -80 241 188 267 40 chr4 39900614 39900715 -162427632 - MER5A DNA MER1_type -23 166 43 * 6322 92 26 6 chr4 39900838 39902489 -162425858 - L1PA10 LINE L1 0 6168 4495 5406 96 17 2 chr4 39902591 39903418 -162424929 + L1P LINE L1 1794 2632 -3514 19204 97 6 1 chr4 39903420 39906311 -162422036 + L1P LINE L1 2451 5356 -790 325 294 54 29 chr4 39906621 39906897 -162421450 - L1ME LINE L1 -527 5594 5312 2281 117 3 3 chr4 39907103 39907412 -162420935 + AluSc SINE Alu 1 309 0 412 196 71 54 chr4 39907443 39907555 -162420792 + MER81 DNA DNA 1 114 0 197 340 47 9 chr4 39907595 39907701 -162420646 + L2 LINE L2 2225 2334 -980 767 114 0 0 chr4 39907706 39907811 -162420536 - AluY SINE Alu -77 234 130 187 276 58 35 chr4 39907811 39907898 -162420449 + L2 LINE L2 2326 2414 -900 1264 229 55 25 chr4 39908486 39908849 -162419498 - MLT1A2 LTR MaLR 0 374 1 2211 180 119 17 chr4 39909823 39910295 -162418052 - MLT2B1 LTR ERVL 0 520 1 328 229 9 0 chr4 39910636 39910713 -162417634 - MER91B DNA MER1_type -59 81 1 773 123 0 0 chr4 39911628 39911750 -162416597 - L1MB5 LINE L1 -1 6173 6052 189 184 0 0 chr4 39912894 39912932 -162415415 + L2 LINE L2 3273 3310 -3 186 349 56 40 chr4 39913160 39913286 -162415061 + MER5A DNA MER1_type 33 160 -29 237 355 36 30 chr4 39915027 39915193 -162413154 + MER5A DNA MER1_type 23 189 0 2215 117 0 0 chr4 39915260 39915551 -162412796 - AluSx SINE Alu -21 291 1 24 32 0 0 chr4 39915630 39915661 -162412686 + AT_rich Low_complexity Low_complexity 1 31 0 2050 142 0 3 chr4 39915840 39916135 -162412212 - AluSx SINE Alu -18 294 1 301 288 12 12 chr4 39916135 39916215 -162412132 - L1ME4a LINE L1 -202 5919 5840 413 288 50 18 chr4 39916249 39916468 -162411879 - L1ME4a LINE L1 -370 5751 5526 3725 162 90 28 chr4 39917447 39918257 -162410090 + L1MA9 LINE L1 5402 6261 -51 27 73 0 0 chr4 39918437 39918492 -162409855 + AT_rich Low_complexity Low_complexity 1 55 0 273 290 26 47 chr4 39918574 39918767 -162409580 - L1MEd LINE L1 -4864 1255 1067 260 281 82 14 chr4 39918962 39919108 -162409239 - L1MEd LINE L1 -5045 1074 919 301 289 44 0 chr4 39920223 39920313 -162408034 + MIR SINE MIR 151 244 -18 582 289 82 97 chr4 39920841 39921478 -162406869 - L2 LINE L2 -6 3307 2681 21 36 0 0 chr4 39922790 39922818 -162405529 + AT_rich Low_complexity Low_complexity 1 28 0 1320 187 19 19 chr4 39923750 39924018 -162404329 - MLT1A1 LTR MaLR -95 270 3 281 307 11 11 chr4 39924048 39924136 -162404211 + L2 LINE L2 3184 3271 -1 2554 65 0 0 chr4 39924495 39924802 -162403545 + AluY SINE Alu 1 307 -4 4775 114 50 38 chr4 39925768 39927345 -162401002 + L1PA16 LINE L1 4564 6157 -9 2197 83 0 51 chr4 39927365 39927679 -162400668 + AluSg SINE Alu 1 298 -12 306 0 0 0 chr4 39928215 39928249 -162400098 + (CA)n Simple_repeat Simple_repeat 2 35 0 21 0 0 0 chr4 39929000 39929021 -162399326 + AT_rich Low_complexity Low_complexity 1 21 0 1470 233 70 86 chr4 39930100 39931026 -162397321 + L1M4 LINE L1 2214 3124 -3022 292 232 18 98 chr4 39931105 39931217 -162397130 - MIR3 SINE MIR -8 200 98 315 361 71 13 chr4 39931274 39931429 -162396918 - MIR SINE MIR -79 183 20 187 303 90 34 chr4 39931923 39932012 -162396335 - L2 LINE L2 -11 3261 3168 805 184 87 4 chr4 39932794 39933013 -162395334 - L1PB4 LINE L1 -4 6152 5897 2276 107 7 0 chr4 39934585 39934895 -162393452 - AluSx SINE Alu 0 312 1 640 237 30 12 chr4 39936400 39936600 -162391747 - MIR SINE MIR 0 262 13 2256 165 41 10 chr4 39937349 39937762 -162390585 + MSTB LTR MaLR 1 426 0 537 294 42 71 chr4 39938696 39938897 -162389450 - MIR SINE MIR -31 231 37 2485 57 3 0 chr4 39938897 39939197 -162389150 - AluY SINE Alu -10 301 1 537 294 42 71 chr4 39939197 39939233 -162389114 - MIR SINE MIR -225 37 1 430 313 74 14 chr4 39939257 39939624 -162388723 - L1ME4a LINE L1 -251 5870 5482 223 241 124 69 chr4 39939955 39940100 -162388247 + MIR SINE MIR 103 255 -7 208 296 148 0 chr4 39940169 39940257 -162388090 + L2 LINE L2 3141 3241 -31 2357 78 10 7 chr4 39940780 39941075 -162387272 + AluSp SINE Alu 1 296 -17 37 99 0 0 chr4 39941097 39941218 -162387129 + AT_rich Low_complexity Low_complexity 1 121 0 710 116 41 7 chr4 39941222 39941369 -162386978 + L1MA7 LINE L1 6136 6287 -4 614 271 66 0 chr4 39942636 39942802 -162385545 - MIR SINE MIR -66 196 20 257 337 42 36 chr4 39942827 39943020 -162385327 - MIR SINE MIR -50 212 19 551 252 144 31 chr4 39943470 39943692 -162384655 - MIR SINE MIR 0 262 16 682 323 24 24 chr4 39943784 39944032 -162384315 + MIR SINE MIR 15 262 0 337 299 119 11 chr4 39944092 39944269 -162384078 - MIR SINE MIR -65 197 2 225 30 30 0 chr4 39946108 39946141 -162382206 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 1866 150 0 10 chr4 39946141 39946426 -162381921 - AluJb SINE Alu -28 284 1 963 131 38 19 chr4 39947386 39947546 -162380801 - L1PA10 LINE L1 0 6168 6006 522 176 17 42 chr4 39948379 39948498 -162379849 + L1MA8 LINE L1 6176 6291 0 543 133 0 0 chr4 39949348 39949423 -162378924 - AluJ/FLAM SINE Alu -232 80 6 1719 142 16 13 chr4 39949572 39949875 -162378472 - AluSq SINE Alu -9 304 1 1964 101 4 0 chr4 39949897 39950155 -162378192 - AluSx SINE Alu -10 302 44 704 185 5 116 chr4 39950197 39950386 -162377961 + MIR SINE MIR 45 212 -50 2086 132 14 0 chr4 39950413 39950708 -162377639 - AluSx SINE Alu -13 299 1 440 64 9 55 chr4 39950838 39950947 -162377400 + (TA)n Simple_repeat Simple_repeat 2 105 0 707 170 66 33 chr4 39950948 39951130 -162377217 - L1MB4 LINE L1 -17 6163 5976 208 298 61 61 chr4 39951233 39951364 -162376983 - L2 LINE L2 -197 3116 2986 2065 95 3 43 chr4 39952008 39952312 -162376035 - AluSx SINE Alu -20 292 1 221 191 0 63 chr4 39952439 39952502 -162375845 + (TATATG)n Simple_repeat Simple_repeat 6 64 0 746 209 19 0 chr4 39952711 39952869 -162375478 - MER5B DNA MER1_type -17 161 1 436 308 53 8 chr4 39952872 39953005 -162375342 - MIR3 SINE MIR -6 202 64 236 284 49 0 chr4 39953895 39953976 -162374371 - MIR3 SINE MIR -13 195 111 2088 105 18 7 chr4 39954144 39954430 -162373917 + AluSx SINE Alu 1 289 -23 868 142 108 85 chr4 39954597 39954809 -162373538 - MER20 DNA MER1_type -2 217 1 2034 125 26 7 chr4 39957019 39957324 -162371023 - AluSx SINE Alu -1 311 1 767 63 0 0 chr4 39957734 39957829 -162370518 + AluSp/q SINE Alu 214 308 -5 309 53 0 0 chr4 39958123 39958161 -162370186 - L1P LINE L1 -1673 4473 4436 232 230 18 124 chr4 39958853 39958966 -162369381 - MIR SINE MIR -75 187 87 1264 91 157 19 chr4 39959398 39959608 -162368739 + AluSc SINE Alu 63 301 -8 524 271 69 21 chr4 39959611 39959799 -162368548 - MIR3 SINE MIR -4 204 8 203 345 23 11 chr4 39959847 39959934 -162368413 + MIR SINE MIR 2 89 -173 406 255 66 19 chr4 39960908 39961014 -162367333 + MIR SINE MIR 36 146 -116 196 237 51 17 chr4 39961017 39961076 -162367271 + MIR SINE MIR 105 165 -97 278 247 164 0 chr4 39961903 39961976 -162366371 - L2 LINE L2 -5 3267 3183 26 74 0 0 chr4 39962865 39962919 -162365428 + AT_rich Low_complexity Low_complexity 1 54 0 444 302 180 25 chr4 39963077 39963355 -162364992 - L2 LINE L2 -536 2778 2458 2184 123 0 0 chr4 39963440 39963732 -162364615 + AluSx SINE Alu 1 292 -20 631 299 5 33 chr4 39964130 39964314 -162364033 - MIR3 SINE MIR -14 194 16 1880 145 104 9 chr4 39965583 39965900 -162362447 + MER7A DNA MER2_type 1 345 -1 190 267 0 0 chr4 39967185 39967230 -162361117 - L2 LINE L2 -2 3311 3267 828 228 146 52 chr4 39967345 39967714 -162360633 - MER57A LTR ERV1 -3 400 1 246 250 0 44 chr4 39967763 39967831 -162360516 - L2 LINE L2 -20 3293 3229 191 337 58 0 chr4 39967987 39968073 -162360274 - L2 LINE L2 -213 3059 2969 272 289 141 0 chr4 39968116 39968244 -162360103 + MIR3 SINE MIR 33 178 -30 331 297 155 71 chr4 39968462 39968758 -162359589 + L2 LINE L2 1443 1713 -1601 192 40 0 0 chr4 39968758 39968783 -162359564 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 331 297 155 71 chr4 39968783 39969066 -162359281 + L2 LINE L2 1713 2071 -1243 23 0 0 0 chr4 39969514 39969537 -162358810 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr4 39969854 39969878 -162358469 + AT_rich Low_complexity Low_complexity 1 24 0 1957 159 85 37 chr4 39970316 39970694 -162357653 + MSTD LTR MaLR 1 396 0 293 273 45 0 chr4 39970890 39970956 -162357391 - MIR SINE MIR -3 259 191 246 239 53 97 chr4 39970966 39971079 -162357268 - MIR SINE MIR -88 120 13 262 217 26 17 chr4 39972197 39972312 -162356035 + (TTATA)n Simple_repeat Simple_repeat 3 118 0 426 220 178 94 chr4 39972799 39972990 -162355357 + MIR SINE MIR 1 207 -55 27 73 0 0 chr4 39973021 39973076 -162355271 + AT_rich Low_complexity Low_complexity 1 55 0 3748 164 30 34 chr4 39973106 39973844 -162354503 + L1MB8 LINE L1 5443 6177 -1 26 0 0 0 chr4 39974379 39974405 -162353942 + AT_rich Low_complexity Low_complexity 1 26 0 371 323 114 47 chr4 39975853 39976214 -162352133 - L2 LINE L2 -332 2981 2585 2322 132 62 94 chr4 39976396 39976475 -162351872 - LTR19A LTR ERV1 -1 485 405 2155 133 7 0 chr4 39976475 39976784 -162351563 + AluSx SINE Alu 1 311 -1 2322 132 62 94 chr4 39976784 39977205 -162351142 - LTR19A LTR ERV1 -81 405 1 516 188 21 0 chr4 39977251 39977347 -162351000 - MER103 DNA DNA -65 101 4 1865 100 4 26 chr4 39977487 39977758 -162350589 + AluSc SINE Alu 45 309 0 832 251 31 35 chr4 39977764 39978023 -162350324 - MLT1B LTR MaLR -90 300 43 2691 114 8 11 chr4 39978024 39978400 -162349947 + THE1C LTR MaLR 1 375 0 4707 126 65 15 chr4 39978400 39979144 -162349203 + THE1C-int LTR MaLR 1 781 -799 688 100 18 9 chr4 39979128 39979238 -162349109 + THE1C-int LTR MaLR 1470 1580 0 * 2846 102 8 8 chr4 39979238 39979611 -162348736 + THE1C LTR MaLR 1 373 -2 287 170 0 0 chr4 39979611 39979658 -162348689 - MLT1B LTR MaLR -342 48 2 2361 92 0 0 chr4 39981067 39981361 -162346986 + AluSq SINE Alu 1 294 -19 2104 127 9 12 chr4 39981585 39981916 -162346431 + MLT2D LTR ERVL 1 330 -84 270 81 0 0 chr4 39982105 39982142 -162346205 + (TC)n Simple_repeat Simple_repeat 1 37 0 497 274 61 6 chr4 39982377 39982541 -162345806 - MIR SINE MIR -3 259 87 2468 74 0 3 chr4 39982541 39982864 -162345483 + L1PA8 LINE L1 5767 6088 -84 255 311 27 0 chr4 39982865 39982939 -162345408 - MIR SINE MIR -173 89 14 712 240 56 22 chr4 39984084 39984263 -162344084 + MER5A DNA MER1_type 4 188 -1 267 176 0 0 chr4 39985204 39985255 -162343092 - MSTB2 LTR MaLR -406 51 1 1285 236 59 44 chr4 39986226 39986616 -162341731 + MSTD LTR MaLR 1 396 0 373 310 54 38 chr4 39986970 39987154 -162341193 + MIR3 SINE MIR 16 202 -6 577 220 50 14 chr4 39987447 39987588 -162340759 - L2 LINE L2 -9 3304 3159 219 346 28 37 chr4 39988420 39988527 -162339820 + MIR SINE MIR 5 110 -152 2747 135 24 7 chr4 39988931 39989352 -162338995 - MSTA LTR MaLR 0 428 1 648 0 0 0 chr4 39989735 39989807 -162338540 + (AATAG)n Simple_repeat Simple_repeat 4 75 0 346 250 14 0 chr4 39989857 39989929 -162338418 - MER5A DNA MER1_type -57 132 60 272 263 0 13 chr4 39989929 39990005 -162338342 - MER112 DNA MER1_type -178 82 8 264 208 28 14 chr4 39990491 39990563 -162337784 + L1MC5 LINE L1 7135 7207 -754 421 242 68 19 chr4 39990667 39990702 -162337645 + L1MC5 LINE L1 7268 7300 -661 4339 57 44 11 chr4 39990702 39990933 -162337414 + L1PA8 LINE L1 5593 5815 -357 2158 122 7 0 chr4 39990933 39991228 -162337119 + AluSp SINE Alu 5 301 -12 4339 57 44 11 chr4 39991228 39991544 -162336803 + L1PA8 LINE L1 5815 6158 -14 421 242 68 19 chr4 39991544 39991669 -162336678 + L1MC5 LINE L1 7300 7436 -525 716 179 107 7 chr4 39991692 39991832 -162336515 - MER5A DNA MER1_type -35 154 1 10749 117 25 4 chr4 39992052 39993633 -162334714 + L1P3 LINE L1 8 1621 -4840 374 133 0 0 chr4 39993750 39993810 -162334537 + L1M1 LINE L1 2632 2691 -4874 1982 118 105 7 chr4 39995091 39995397 -162332950 + MER1B DNA MER1_type 1 336 -1 315 169 28 14 chr4 39995534 39995605 -162332742 - MER33 DNA MER1_type -23 301 230 23 0 0 0 chr4 39995796 39995819 -162332528 + AT_rich Low_complexity Low_complexity 1 23 0 899 231 25 6 chr4 39995823 39996023 -162332324 - MER33 DNA MER1_type -255 69 1 26 0 0 0 chr4 39996159 39996185 -162332162 + AT_rich Low_complexity Low_complexity 1 26 0 2400 67 10 19 chr4 39996215 39996528 -162331819 + AluSq SINE Alu 1 310 -3 239 229 19 48 chr4 39997717 39997822 -162330525 + MER104 DNA Tc2 1 102 -78 1339 171 23 56 chr4 39999233 39999538 -162328809 - L1PB4 LINE L1 0 6156 5862 187 322 64 64 chr4 39999751 39999953 -162328394 + L2 LINE L2 2889 3090 -182 * 603 320 60 41 chr4 39999951 40000270 -162328077 - L2 LINE L2 -2 3270 2946 754 317 35 9 chr4 40000317 40000544 -162327803 - MIR SINE MIR -26 236 4 2235 151 3 3 chr4 40000579 40000944 -162327403 + MER47A DNA MER2_type 1 365 -1 285 299 0 19 chr4 40000944 40001051 -162327296 + (TATATG)n Simple_repeat Simple_repeat 3 107 0 600 256 35 25 chr4 40001170 40001371 -162326976 + MIR SINE MIR 2 204 -58 313 316 9 9 chr4 40001406 40001520 -162326827 - L2 LINE L2 -595 2719 2606 2378 171 14 7 chr4 40001611 40002032 -162326315 + MSTB LTR MaLR 1 424 -2 4363 179 34 22 chr4 40004287 40005392 -162322955 - L1MB8 LINE L1 0 6178 5048 2240 100 7 3 chr4 40005392 40005692 -162322655 + AluSq SINE Alu 1 301 -12 4363 179 34 22 chr4 40005692 40006381 -162321966 - L1MB8 LINE L1 -1130 5048 4369 486 183 69 8 chr4 40006406 40006537 -162321810 - L1MB8 LINE L1 -1741 4405 4267 542 167 56 21 chr4 40006546 40006690 -162321657 - L1MB8 LINE L1 -3130 3016 2868 335 298 21 85 chr4 40006844 40007079 -162321268 - L1MEc LINE L1 -4387 2009 1790 321 289 79 0 chr4 40007154 40007268 -162321079 + MER91B DNA MER1_type 12 134 -56 333 293 20 20 chr4 40007301 40007400 -162320947 + MER91B DNA MER1_type 90 188 -2 276 100 0 0 chr4 40007840 40007880 -162320467 + (T)n Simple_repeat Simple_repeat 1 40 0 351 0 0 0 chr4 40007914 40007953 -162320394 + (TA)n Simple_repeat Simple_repeat 1 39 0 252 0 0 0 chr4 40007952 40007980 -162320367 + (CA)n Simple_repeat Simple_repeat 2 29 0 * 465 140 0 70 chr4 40008375 40008452 -162319895 + MLT1A1 LTR MaLR 1 71 -294 2087 117 56 39 chr4 40008452 40008810 -162319537 - THE1B LTR MaLR 0 364 1 465 140 0 70 chr4 40008810 40008832 -162319515 + MLT1A1 LTR MaLR 71 93 -272 888 165 44 6 chr4 40008841 40009023 -162319324 + MSTA LTR MaLR 238 426 -2 * 1341 182 0 0 chr4 40009023 40009242 -162319105 + MLT1A1 LTR MaLR 145 363 -2 2071 138 29 16 chr4 40009533 40009911 -162318436 + MSTD LTR MaLR 1 383 -13 351 257 67 100 chr4 40011537 40011747 -162316600 - L1MC4 LINE L1 -12 8030 7828 1337 146 87 150 chr4 40011803 40012377 -162315970 - L1ME2 LINE L1 -14 6150 5613 882 198 14 55 chr4 40013159 40013376 -162314971 - MER8 DNA MER2_type 0 239 32 1174 125 27 0 chr4 40013376 40013560 -162314787 + L1MB1 LINE L1 5974 6162 -6 223 289 12 36 chr4 40013960 40014043 -162314304 - L2 LINE L2 -2 3311 3231 506 261 106 6 chr4 40014446 40014607 -162313740 - MIR SINE MIR -45 217 41 527 253 124 48 chr4 40015329 40015701 -162312646 - HAL1 LINE L1 -6 2501 2102 725 211 142 37 chr4 40015905 40016285 -162312062 - HAL1 LINE L1 -1079 1428 1009 1172 113 0 0 chr4 40016330 40016489 -162311858 - AluSg/x SINE Alu -10 300 142 1410 272 74 57 chr4 40016560 40017292 -162311055 - HAL1 LINE L1 -1636 871 128 310 296 0 56 chr4 40017321 40017429 -162310918 + L1MC4 LINE L1 6615 6716 -1326 27 29 0 0 chr4 40017607 40017641 -162310706 + AT_rich Low_complexity Low_complexity 1 34 0 2960 110 14 20 chr4 40017935 40018426 -162309921 - L1MA2 LINE L1 -222 6082 5595 * 5460 131 26 45 chr4 40018423 40019234 -162309113 - L1PA13 LINE L1 0 6163 5338 6602 48 37 6 chr4 40019234 40020160 -162308187 + L1PA7 LINE L1 5202 6154 0 5460 131 26 45 chr4 40020160 40021220 -162307127 - L1PA13 LINE L1 -825 5338 4320 3242 131 6 20 chr4 40021220 40021764 -162306583 - L1PB1 LINE L1 0 6854 6319 12795 173 36 52 chr4 40021766 40024344 -162304003 - L1PB1 LINE L1 -593 6261 3759 2316 82 3 10 chr4 40024344 40024649 -162303698 - AluY SINE Alu -8 303 1 12795 173 36 52 chr4 40024649 40025631 -162302716 - L1PB1 LINE L1 -3095 3759 2762 2163 119 9 24 chr4 40025631 40025968 -162302379 + MER1B DNA MER1_type 1 332 -7 744 176 7 0 chr4 40025969 40026122 -162302225 - L1PB1 LINE L1 -4081 2768 2615 * 8913 195 63 5 chr4 40026117 40027864 -162300483 - L1PB1 LINE L1 -4935 1904 55 7649 218 41 20 chr4 40027935 40029715 -162298632 - L1M1 LINE L1 -697 7027 5286 2327 104 48 22 chr4 40029715 40030070 -162298277 - THE1B LTR MaLR 0 364 1 7649 218 41 20 chr4 40030070 40032505 -162295842 - L1M1 LINE L1 -2438 5286 2612 12925 154 28 72 chr4 40032605 40033044 -162295303 - L1M1 LINE L1 -4932 2633 2176 10324 61 43 14 chr4 40033044 40034391 -162293956 - SVA Other Other 0 1386 1 12925 154 28 72 chr4 40034391 40036704 -162291643 - L1M1 LINE L1 -5389 2176 3 2164 102 10 16 chr4 40036828 40037131 -162291216 - AluSc SINE Alu -8 301 1 423 153 0 0 chr4 40037184 40037256 -162291091 + AluS SINE Alu 2 73 -239 1352 148 4 13 chr4 40037388 40037618 -162290729 + AluSp SINE Alu 86 313 0 188 336 92 25 chr4 40037626 40037745 -162290602 - MIR SINE MIR -115 147 21 1480 207 29 31 chr4 40037788 40038174 -162290173 - MLT1B LTR MaLR -5 385 1 210 298 58 29 chr4 40038175 40038279 -162290068 - L2 LINE L2 -1366 1948 1842 476 161 11 11 chr4 40038463 40038556 -162289791 - MSTD LTR MaLR -12 384 292 221 356 30 30 chr4 40038585 40038720 -162289627 + MIR SINE MIR 13 147 -115 603 174 19 3 chr4 40038724 40038866 -162289481 - MSTC LTR MaLR -218 147 1 710 268 208 52 chr4 40039141 40039507 -162288840 - MLT1G1 LTR MaLR -11 584 162 1667 186 29 14 chr4 40039507 40039852 -162288495 + MLT1A1 LTR MaLR 1 350 -15 709 271 6 11 chr4 40039842 40040023 -162288324 - MLT1G1 LTR MaLR -415 180 1 * 202 158 0 26 chr4 40040035 40040073 -162288274 + (CTATA)n Simple_repeat Simple_repeat 2 38 0 215 254 31 27 chr4 40040701 40040842 -162287505 + MER5A DNA MER1_type 4 189 0 228 297 10 20 chr4 40041004 40041105 -162287242 - Charlie7 DNA MER1_type -2512 100 1 2194 78 25 3 chr4 40041471 40041753 -162286594 + AluSq SINE Alu 1 288 -25 381 95 0 0 chr4 40041753 40041816 -162286531 + (TA)n Simple_repeat Simple_repeat 2 64 0 11968 182 16 20 chr4 40042120 40045103 -162283244 - L1MA1 LINE L1 0 7721 4839 2379 100 0 0 chr4 40045103 40045413 -162282934 - AluY SINE Alu -1 310 1 11968 182 16 20 chr4 40045413 40046519 -162281828 - L1MA1 LINE L1 -2882 4839 3730 5454 200 86 7 chr4 40046544 40048068 -162280279 - L1MA1 LINE L1 -5906 1659 16 1225 211 131 21 chr4 40048188 40048525 -162279822 - MLT1A2 LTR MaLR 0 374 1 1660 213 117 35 chr4 40048677 40049166 -162279181 - MLT1F LTR MaLR 0 542 14 198 0 0 0 chr4 40049410 40049432 -162278915 + (GGGAA)n Simple_repeat Simple_repeat 4 25 0 7161 142 37 7 chr4 40051053 40052034 -162276313 + Tigger3b DNA MER2_type 1 1025 -2003 2354 56 3 36 chr4 40052034 40052338 -162276009 + AluY SINE Alu 1 294 -17 7161 142 37 7 chr4 40052338 40052534 -162275813 + Tigger3b DNA MER2_type 1025 1214 -17 336 233 75 42 chr4 40054315 40054435 -162273912 - MIR SINE MIR -15 247 124 2085 140 3 7 chr4 40054786 40055094 -162273253 + AluSx SINE Alu 1 307 -5 2034 127 0 25 chr4 40055190 40055506 -162272841 + AluSx SINE Alu 1 308 -4 249 311 27 61 chr4 40055596 40055744 -162272603 - MIR SINE MIR -2 260 118 3251 203 119 9 chr4 40055982 40056106 -162272241 - MER63C DNA MER1_type -138 922 813 2577 59 0 0 chr4 40056106 40056411 -162271936 + AluY SINE Alu 1 305 -6 3251 203 119 9 chr4 40056411 40057111 -162271236 - MER63C DNA MER1_type -247 813 2 871 154 74 12 chr4 40057438 40057600 -162270747 + L1PB1 LINE L1 5972 6143 -8 38 39 0 0 chr4 40057605 40057657 -162270690 + AT_rich Low_complexity Low_complexity 1 52 0 1912 208 19 8 chr4 40059022 40059383 -162268964 - MLT1A1 LTR MaLR 0 365 1 245 329 24 12 chr4 40059423 40059505 -162268842 - L2 LINE L2 -1 3312 3230 859 210 6 6 chr4 40059737 40059894 -162268453 + FRAM SINE Alu 1 157 -19 219 283 78 20 chr4 40060186 40060328 -162268019 - MIR SINE MIR -58 150 41 753 242 88 23 chr4 40060328 40060543 -162267804 + MIR SINE MIR 28 256 -6 1163 184 60 17 chr4 40060810 40061044 -162267303 - MLT1F1 LTR MaLR -2 565 322 953 184 18 0 chr4 40061131 40061294 -162267053 - MER58B DNA MER1_type -2 339 174 347 326 89 42 chr4 40062275 40062465 -162265882 + MIR SINE MIR 46 244 -18 339 213 0 0 chr4 40062474 40062554 -162265793 + (CACCAT)n Simple_repeat Simple_repeat 2 81 0 204 40 0 0 chr4 40062562 40062587 -162265760 + (CA)n Simple_repeat Simple_repeat 1 25 0 2178 176 14 102 chr4 40063467 40063869 -162264478 + LTR32 LTR ERVL 15 366 -105 2262 96 10 0 chr4 40063869 40064162 -162264185 + AluSx SINE Alu 1 296 -16 2178 176 14 102 chr4 40064162 40064260 -162264087 + LTR32 LTR ERVL 366 471 0 591 186 16 0 chr4 40064367 40064491 -162263856 - L1MA6 LINE L1 -74 6226 6101 399 244 34 42 chr4 40066146 40066265 -162262082 - MIR SINE MIR -131 131 14 2521 157 26 47 chr4 40066265 40066731 -162261616 - LTR32 LTR ERVL -2 469 14 1075 185 39 19 chr4 40067033 40067238 -162261109 + MER3 DNA MER1_type 1 209 0 228 237 43 108 chr4 40067372 40067465 -162260882 + L2 LINE L2 3186 3272 0 290 190 10 70 chr4 40067624 40067724 -162260623 - HAL1 LINE L1 -133 2374 2281 2780 235 92 43 chr4 40067823 40068054 -162260293 - HAL1 LINE L1 -368 2139 1921 2309 38 45 21 chr4 40068054 40068343 -162260004 + AluY SINE Alu 1 296 -15 2780 235 92 43 chr4 40068343 40069156 -162259191 - HAL1 LINE L1 -586 1921 1044 2094 129 10 3 chr4 40069340 40069651 -162258696 - AluSp SINE Alu 0 313 1 725 286 127 40 chr4 40069706 40070084 -162258263 - HAL1 LINE L1 -1884 623 213 206 227 0 0 chr4 40070536 40070580 -162257767 + (ATG)n Simple_repeat Simple_repeat 3 46 0 184 320 82 0 chr4 40070587 40070684 -162257663 - MIR SINE MIR -3 259 155 3794 92 21 2 chr4 40070684 40071165 -162257182 + LTR2B LTR ERV1 1 490 0 2460 103 44 16 chr4 40071165 40071553 -162256794 + Harlequin LTR ERV1 1 399 -6497 750 138 21 35 chr4 40071524 40071669 -162256678 + HERVE LTR ERV1 255 397 -7416 * 4803 66 34 6 chr4 40071649 40072273 -162256074 + HERVE LTR ERV1 263 903 -5993 * 7191 56 16 17 chr4 40072258 40073262 -162255085 + HERVE LTR ERV1 1572 2574 -4322 4691 67 30 0 chr4 40073252 40073847 -162254500 + HERVE LTR ERV1 3342 3954 -2942 * 17509 129 11 8 chr4 40073832 40076476 -162251871 + HERVE LTR ERV1 4246 6896 0 3919 79 21 2 chr4 40076476 40076957 -162251390 + LTR2B LTR ERV1 1 490 0 205 246 70 0 chr4 40076957 40077014 -162251333 - MIR SINE MIR -104 158 98 187 114 45 0 chr4 40080946 40080990 -162247357 + CT-rich Low_complexity Low_complexity 3 48 0 2389 89 3 0 chr4 40081646 40081949 -162246398 - AluSp SINE Alu -9 304 1 1967 101 0 0 chr4 40082671 40082928 -162245419 + AluSx SINE Alu 1 257 -55 298 59 44 29 chr4 40082930 40082998 -162245349 + (TA)n Simple_repeat Simple_repeat 1 69 0 272 192 0 0 chr4 40083122 40083174 -162245173 + AluSx SINE Alu 256 307 -1 902 182 0 28 chr4 40084023 40084204 -162244143 - MER104 DNA MER2_type 0 180 5 193 314 65 65 chr4 40084305 40084458 -162243889 - L2 LINE L2 -35 3278 3126 2575 106 43 3 chr4 40084472 40084822 -162243525 + THE1B LTR MaLR 1 364 0 2022 115 14 0 chr4 40084846 40085146 -162243201 - AluSx SINE Alu 0 304 1 319 346 87 16 chr4 40085193 40085378 -162242969 - L2 LINE L2 -225 3047 2850 329 328 187 11 chr4 40085521 40085783 -162242564 + L2 LINE L2 2985 3292 -21 242 298 89 70 chr4 40085880 40086038 -162242309 + MIR3 SINE MIR 18 178 -30 260 268 14 14 chr4 40086576 40086647 -162241700 + L2 LINE L2 3200 3270 -2 2213 103 13 3 chr4 40086753 40087063 -162241284 - AluSq SINE Alu 0 313 1 1641 178 143 6 chr4 40087862 40088183 -162240164 - MLT1A1 LTR MaLR 0 365 1 435 147 0 0 chr4 40088912 40088987 -162239360 + MER5A DNA MER1_type 1 75 -114 7899 15 1 0 chr4 40088987 40090117 -162238230 + L1PA3 LINE L1 5036 6166 0 292 232 232 30 chr4 40090119 40090218 -162238129 + MER5A DNA MER1_type 68 186 -3 182 298 67 29 chr4 40091967 40092071 -162236276 - L2 LINE L2 -313 2959 2852 2989 218 52 8 chr4 40092156 40092775 -162235572 + MER82 DNA MER2_type 1 646 -7 360 317 34 58 chr4 40092886 40093091 -162235256 - L2 LINE L2 -556 2758 2559 311 300 0 0 chr4 40093294 40093364 -162234983 + L2 LINE L2 3200 3269 -3 999 204 53 22 chr4 40093691 40094128 -162234219 - MLT1A2 LTR MaLR 0 390 2 2265 115 0 3 chr4 40094491 40094804 -162233543 + AluSq SINE Alu 1 312 -1 260 241 23 23 chr4 40094845 40094932 -162233415 - MIR SINE MIR -8 254 168 2312 111 0 0 chr4 40095001 40095307 -162233040 - AluSq SINE Alu -7 306 1 197 222 0 0 chr4 40095353 40095389 -162232958 + MER5A DNA MER1_type 52 87 -102 285 75 0 0 chr4 40095456 40095496 -162232851 + (CA)n Simple_repeat Simple_repeat 2 41 0 3480 75 18 9 chr4 40096229 40096669 -162231678 + MLT2A1 LTR ERVL 1 444 0 1987 139 0 7 chr4 40096767 40097061 -162231286 - AluSx SINE Alu 0 312 21 2107 121 10 3 chr4 40097085 40097382 -162230965 - AluSx SINE Alu -13 299 1 264 30 0 0 chr4 40097562 40097595 -162230752 + (TAAAA)n Simple_repeat Simple_repeat 2 34 0 465 226 107 60 chr4 40097666 40097834 -162230513 + MIR SINE MIR 70 245 -17 608 274 68 26 chr4 40097852 40098086 -162230261 - MIR SINE MIR -17 245 2 195 42 0 0 chr4 40098151 40098175 -162230172 + (TC)n Simple_repeat Simple_repeat 1 24 0 258 211 19 0 chr4 40098221 40098273 -162230074 + L2 LINE L2 3197 3249 -23 189 237 0 0 chr4 40099351 40099389 -162228958 - MIR SINE MIR -63 145 108 1244 150 5 38 chr4 40099391 40099604 -162228743 + AluJb SINE Alu 86 291 -21 2305 99 0 3 chr4 40099680 40099997 -162228350 - AluSq SINE Alu 0 313 1 2427 41 3 60 chr4 40100478 40100795 -162227552 - AluY SINE Alu -12 299 1 2302 111 3 0 chr4 40101853 40102027 -162226320 - AluSx SINE Alu -4 308 131 2287 67 0 0 chr4 40102027 40102297 -162226050 - AluY SINE Alu -4 307 38 2302 111 3 0 chr4 40102297 40102429 -162225918 - AluSx SINE Alu -181 131 1 23 33 0 0 chr4 40102545 40102575 -162225772 + AT_rich Low_complexity Low_complexity 1 30 0 279 0 0 0 chr4 40103053 40103084 -162225263 + (A)n Simple_repeat Simple_repeat 1 31 0 480 295 35 12 chr4 40103301 40103474 -162224873 - MIR SINE MIR -40 222 46 2232 103 3 3 chr4 40103492 40103784 -162224563 - AluSx SINE Alu -20 292 1 3050 119 65 14 chr4 40103993 40104498 -162223849 - LTR26B LTR ERV1 0 531 1 356 237 122 15 chr4 40104654 40104785 -162223562 + MIR SINE MIR 118 262 0 2346 106 0 0 chr4 40104789 40105091 -162223256 + AluSx SINE Alu 3 304 -8 258 32 0 0 chr4 40105575 40105606 -162222741 + (TG)n Simple_repeat Simple_repeat 2 32 0 412 256 80 0 chr4 40106150 40106287 -162222060 - MIR SINE MIR -12 250 103 244 196 179 71 chr4 40106611 40106723 -162221624 - MLT1K LTR MaLR -19 569 446 1950 166 0 10 chr4 40106731 40107039 -162221308 + AluJb SINE Alu 1 305 -7 283 237 194 0 chr4 40107483 40107596 -162220751 - MIR SINE MIR -64 144 50 1510 192 7 14 chr4 40108606 40108892 -162219455 - AluJb SINE Alu 0 312 29 186 133 0 0 chr4 40109299 40109329 -162219018 + (CA)n Simple_repeat Simple_repeat 2 31 0 2112 208 40 99 chr4 40109386 40109560 -162218787 + L1MC4a LINE L1 6170 6353 -1455 1182 78 0 0 chr4 40109560 40109740 -162218607 + (CA)n Simple_repeat Simple_repeat 1 180 0 2112 208 40 99 chr4 40109740 40110272 -162218075 + L1MC4a LINE L1 6353 6834 -974 1944 154 7 0 chr4 40110279 40110565 -162217782 + AluSx SINE Alu 22 309 -3 807 187 42 6 chr4 40110575 40110871 -162217476 + GA-rich Low_complexity Low_complexity 1 306 0 249 108 0 0 chr4 40110898 40110935 -162217412 + (GGA)n Simple_repeat Simple_repeat 3 39 0 * 497 112 40 24 chr4 40110928 40111053 -162217294 + GA-rich Low_complexity Low_complexity 4 130 0 2096 251 65 15 chr4 40111134 40111177 -162217170 + L1MC4a LINE L1 7102 7141 -667 986 238 27 80 chr4 40111177 40111589 -162216758 + MLT1B LTR MaLR 1 390 0 2096 251 65 15 chr4 40111589 40112218 -162216129 + L1MC4a LINE L1 7141 7808 0 13545 124 47 48 chr4 40112226 40112366 -162215981 + Tigger1 DNA MER2_type 1 140 -2278 2165 119 0 31 chr4 40112366 40112686 -162215661 - AluSg SINE Alu 0 310 1 13545 124 47 48 chr4 40112686 40113445 -162214902 + Tigger1 DNA MER2_type 140 898 -1520 1964 141 53 0 chr4 40113445 40113729 -162214618 - AluSx SINE Alu -13 299 1 13545 124 47 48 chr4 40113729 40115248 -162213099 + Tigger1 DNA MER2_type 898 2418 0 2493 71 0 7 chr4 40116692 40117000 -162211347 + AluY SINE Alu 1 306 -5 231 61 0 0 chr4 40117121 40117154 -162211193 + (A)n Simple_repeat Simple_repeat 1 33 0 2268 110 0 3 chr4 40117154 40117454 -162210893 + AluSx SINE Alu 3 301 -11 195 204 0 0 chr4 40117724 40117768 -162210579 + (CA)n Simple_repeat Simple_repeat 2 45 0 21 0 0 0 chr4 40118062 40118083 -162210264 + AT_rich Low_complexity Low_complexity 1 21 0 204 216 0 0 chr4 40118244 40118281 -162210066 + (CATCC)n Simple_repeat Simple_repeat 3 39 0 451 139 23 0 chr4 40118347 40118433 -162209914 + MSTA LTR MaLR 160 247 -181 561 264 82 24 chr4 40120914 40121122 -162207225 - MIR SINE MIR 0 262 43 365 297 28 33 chr4 40121916 40122098 -162206249 + MER5A DNA MER1_type 1 181 -8 2229 110 0 0 chr4 40122299 40122600 -162205747 + AluSx SINE Alu 1 301 0 425 268 119 43 chr4 40122931 40123008 -162205339 - L1MC4a LINE L1 -341 5780 5710 1569 150 9 98 chr4 40123008 40123335 -162205012 - AluJo SINE Alu -13 299 2 425 268 119 43 chr4 40123335 40123639 -162204708 - L1MC4a LINE L1 -411 5710 5501 2230 90 4 0 chr4 40123666 40123973 -162204374 - AluSp SINE Alu 0 312 5 2318 90 0 0 chr4 40123989 40124279 -162204068 - AluSg SINE Alu -20 290 1 449 227 55 16 chr4 40124296 40124388 -162203959 - MER94 DNA DNA -1 133 33 1734 151 4 15 chr4 40124388 40124659 -162203688 - AluJo SINE Alu -34 278 11 449 227 55 16 chr4 40124659 40124694 -162203653 - MER94 DNA DNA -101 33 1 232 243 81 0 chr4 40124731 40124805 -162203542 - L1P5 LINE L1 -721 5435 5356 626 246 22 28 chr4 40125701 40125880 -162202467 - MIR SINE MIR -84 178 1 2291 108 0 16 chr4 40125973 40126289 -162202058 + AluY SINE Alu 1 311 0 342 272 10 29 chr4 40127486 40127589 -162200758 + L2 LINE L2 3189 3289 -24 2300 102 0 3 chr4 40127596 40127899 -162200448 - AluSg SINE Alu -8 302 1 233 279 90 18 chr4 40128243 40128354 -162199993 + MIR SINE MIR 58 176 -86 2503 53 0 31 chr4 40129204 40129525 -162198822 - AluY SINE Alu 0 311 1 253 285 118 14 chr4 40129801 40129940 -162198407 - MIR3 SINE MIR -45 163 13 1668 139 37 3 chr4 40130051 40130346 -162198001 + L1MA8 LINE L1 5026 5330 -816 298 97 83 56 chr4 40130338 40130410 -162197937 + L1MA8 LINE L1 5982 6055 -236 * 1283 130 40 0 chr4 40130474 40130697 -162197650 + L1MA8 LINE L1 6060 6291 0 5375 146 36 10 chr4 40130717 40130992 -162197355 + L1MA8 LINE L1 5321 5587 -704 2072 138 7 7 chr4 40130992 40131297 -162197050 + AluSx SINE Alu 1 305 -7 5375 146 36 10 chr4 40131297 40131961 -162196386 + L1MA8 LINE L1 5587 6285 -6 505 248 81 50 chr4 40133042 40133264 -162195083 + MIR SINE MIR 33 261 -1 353 301 71 16 chr4 40134111 40134294 -162194053 + MIR SINE MIR 70 262 0 420 302 123 0 chr4 40134665 40134877 -162193470 - MIR SINE MIR 0 262 25 2565 44 0 35 chr4 40135152 40135470 -162192877 - AluY SINE Alu -4 307 1 374 242 130 101 chr4 40135717 40135994 -162192353 + MER102b DNA MER1_type 56 340 -1 2022 150 6 10 chr4 40136590 40136903 -162191444 + AluJb SINE Alu 1 312 0 2136 133 7 0 chr4 40136963 40137265 -162191082 - AluSq SINE Alu -9 304 1 2390 106 0 0 chr4 40137922 40138234 -162190113 + AluSx SINE Alu 1 312 0 489 295 116 11 chr4 40138487 40138677 -162189670 - MIR SINE MIR 0 262 53 493 313 10 21 chr4 40139078 40139270 -162189077 + MLT1J1 LTR MaLR 4 193 -253 394 274 80 34 chr4 40139298 40139473 -162188874 + MLT1J2 LTR MaLR 268 450 0 1859 166 7 3 chr4 40140139 40140435 -162187912 + AluJo SINE Alu 1 297 -15 830 263 5 18 chr4 40140800 40141024 -162187323 - MIR SINE MIR -41 221 1 2552 64 0 0 chr4 40141109 40141407 -162186940 + AluY SINE Alu 1 298 -13 226 316 20 31 chr4 40141851 40141949 -162186398 - L2 LINE L2 -3 3269 3173 232 264 14 42 chr4 40142481 40142553 -162185794 + L2 LINE L2 3242 3311 -2 488 280 50 33 chr4 40142717 40142899 -162185448 - MIR SINE MIR -69 193 9 982 193 14 45 chr4 40142929 40143152 -162185195 + MER20 DNA MER1_type 1 216 -3 22 35 0 0 chr4 40143306 40143335 -162185012 + AT_rich Low_complexity Low_complexity 1 29 0 2442 92 0 0 chr4 40143898 40144204 -162184143 + AluY SINE Alu 1 306 -5 546 246 91 82 chr4 40144710 40144942 -162183405 - MER106B DNA MER1_type -2 1057 1 1456 209 75 3 chr4 40145300 40145621 -162182726 + MER2 DNA MER2_type 1 344 -1 264 271 0 0 chr4 40146026 40146085 -162182262 + (CA)n Simple_repeat Simple_repeat 2 60 0 549 311 38 4 chr4 40146609 40146844 -162181503 - MIR SINE MIR -4 258 16 1453 192 177 85 chr4 40147335 40148052 -162180295 + MER21B LTR ERV1 21 871 -60 326 236 36 64 chr4 40149114 40149222 -162179125 + MIR SINE MIR 64 170 -92 2175 92 18 11 chr4 40149222 40149555 -162178792 - AluSx SINE Alu 0 335 1 326 236 36 64 chr4 40149555 40149585 -162178762 + MIR SINE MIR 170 199 -63 400 275 17 0 chr4 40149680 40149800 -162178547 + MIR SINE MIR 5 126 -136 390 258 177 29 chr4 40150399 40150608 -162177739 + MIR SINE MIR 1 240 -22 918 203 84 4 chr4 40151183 40151410 -162176937 + L1MB3 LINE L1 5932 6176 -7 1903 158 17 0 chr4 40151522 40151820 -162176527 - AluJo SINE Alu -9 303 1 327 244 42 50 chr4 40151820 40151939 -162176408 - MIR SINE MIR -97 165 48 205 188 0 47 chr4 40153746 40153810 -162174537 + (TTAAA)n Simple_repeat Simple_repeat 3 63 0 642 229 63 58 chr4 40154692 40154897 -162173450 + MIR SINE MIR 1 206 -56 378 211 90 75 chr4 40154911 40155044 -162173303 - L2 LINE L2 -12 3301 3167 313 278 26 43 chr4 40155141 40155256 -162173091 - L2 LINE L2 -1 3271 3159 1620 137 7 50 chr4 40155594 40155872 -162172475 + AluSx SINE Alu 36 301 -11 555 157 0 0 chr4 40155970 40156053 -162172294 + AluS SINE Alu 2 84 -229 1043 137 43 0 chr4 40156350 40156511 -162171836 + LTR28 LTR ERV1 1 168 -852 1042 188 80 80 chr4 40156508 40156869 -162171478 + LTR27 LTR ERV1 276 636 0 * 257 219 49 12 chr4 40157712 40157794 -162170553 + MIR SINE MIR 69 153 -109 1771 116 51 18 chr4 40157833 40158108 -162170239 + MER4C LTR ERV1 8 291 -174 936 166 0 6 chr4 40158253 40158410 -162169937 + MER4C LTR ERV1 310 465 0 732 229 60 37 chr4 40158423 40158641 -162169706 + MLT1G1 LTR MaLR 75 297 -298 666 199 41 34 chr4 40158700 40158846 -162169501 + MLT1G1 LTR MaLR 447 593 -2 243 258 30 15 chr4 40158847 40158913 -162169434 + MIR SINE MIR 158 224 -38 1227 163 0 28 chr4 40158956 40159171 -162169176 - MER3 DNA MER1_type 0 209 1 296 225 188 59 chr4 40159445 40159801 -162168546 + L1ME4a LINE L1 5707 6108 -13 25 0 0 0 chr4 40160036 40160061 -162168286 + AT_rich Low_complexity Low_complexity 1 25 0 1864 149 203 20 chr4 40160075 40160470 -162167877 + MLT1C LTR MaLR 1 467 0 3249 157 48 21 chr4 40160697 40161302 -162167045 + L1MB1 LINE L1 5543 6163 -5 1514 205 16 93 chr4 40161338 40161767 -162166580 + MSTD LTR MaLR 1 396 0 203 161 48 32 chr4 40161962 40162024 -162166323 + A-rich Low_complexity Low_complexity 1 63 0 963 180 126 75 chr4 40162450 40162715 -162165632 + AluJb SINE Alu 1 282 -20 183 80 0 0 chr4 40162715 40162740 -162165607 + (CA)n Simple_repeat Simple_repeat 1 25 0 963 180 126 75 chr4 40162740 40162752 -162165595 + AluJb SINE Alu 282 292 -10 450 205 0 0 chr4 40162778 40162856 -162165491 + FLAM_A SINE Alu 21 98 -44 624 225 6 38 chr4 40163251 40163411 -162164936 - MIR SINE MIR -72 190 36 450 195 0 0 chr4 40164381 40164468 -162163879 + MIR SINE MIR 62 148 -60 207 0 0 0 chr4 40164871 40164894 -162163453 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 396 181 0 0 chr4 40165013 40165085 -162163262 + MIR SINE MIR 71 142 -66 312 188 30 143 chr4 40165205 40165338 -162163009 + MER46C DNA MER2_type 12 129 -209 2580 65 0 0 chr4 40165544 40165851 -162162496 + AluY SINE Alu 1 307 -4 1966 134 11 3 chr4 40166062 40166374 -162161973 - AluSx SINE Alu 0 314 1 351 305 115 5 chr4 40168341 40168541 -162159806 - MIR SINE MIR -33 229 8 2115 86 45 38 chr4 40168890 40169182 -162159165 + AluSc SINE Alu 1 294 -15 374 244 59 37 chr4 40171176 40171311 -162157036 + MIR SINE MIR 74 211 -51 205 270 32 16 chr4 40171340 40171403 -162156944 - L2 LINE L2 -72 3200 3137 873 227 36 20 chr4 40172030 40172281 -162156066 - MIR SINE MIR 0 262 8 7058 65 5 29 chr4 40172994 40174847 -162153500 + SVA Other Other 15 1385 -1 192 77 0 0 chr4 40174850 40174876 -162153471 + (A)n Simple_repeat Simple_repeat 1 26 0 2217 97 0 41 chr4 40175346 40175665 -162152682 - AluSc SINE Alu -3 306 1 771 207 63 40 chr4 40175819 40176041 -162152306 - MER21B LTR ERV1 -111 752 526 4078 129 16 10 chr4 40176043 40176665 -162151682 + MER41B LTR ERV1 1 626 -9 1337 229 45 64 chr4 40176621 40177223 -162151124 - MER21B LTR ERV1 -295 568 13 * 2164 134 0 6 chr4 40177969 40178283 -162150064 - AluJo SINE Alu 0 312 1 199 250 24 71 chr4 40180196 40180280 -162148067 + MIR SINE MIR 110 189 -73 524 169 61 40 chr4 40180618 40180766 -162147581 + MER5A DNA MER1_type 39 189 0 328 260 106 19 chr4 40181029 40181133 -162147214 + L2 LINE L2 3160 3272 0 299 277 62 18 chr4 40181634 40181746 -162146601 - L2 LINE L2 -1 3271 3155 303 253 24 24 chr4 40181799 40181882 -162146465 + MIR3 SINE MIR 108 190 -18 230 265 39 49 chr4 40182099 40182201 -162146146 + MIR3 SINE MIR 101 201 -7 2663 114 28 37 chr4 40182442 40182480 -162145867 - MSTA LTR MaLR -3 425 388 2099 110 0 23 chr4 40182480 40182779 -162145568 + AluSx SINE Alu 1 292 -20 2663 114 28 37 chr4 40182779 40183169 -162145178 - MSTA LTR MaLR -40 388 1 259 256 124 16 chr4 40183483 40183612 -162144735 - MIR SINE MIR 0 262 120 756 254 125 39 chr4 40184272 40184464 -162143883 - MER46C DNA MER2_type 0 338 107 2256 91 10 7 chr4 40184464 40184760 -162143587 + AluSx SINE Alu 1 297 -15 756 254 125 39 chr4 40184760 40184878 -162143469 - MER46C DNA MER2_type -231 107 1 1430 107 5 0 chr4 40185181 40185377 -162142970 + AluSp SINE Alu 115 311 -2 252 0 0 0 chr4 40185377 40185405 -162142942 + (TA)n Simple_repeat Simple_repeat 2 29 0 414 269 8 8 chr4 40185730 40185849 -162142498 + MER5A DNA MER1_type 65 183 -6 438 159 9 37 chr4 40185877 40185984 -162142363 - MIR SINE MIR -112 150 47 192 235 0 0 chr4 40186628 40186679 -162141668 - L2 LINE L2 0 3313 3263 774 238 81 122 chr4 40188382 40188915 -162139432 + MLT1J LTR MaLR 1 511 0 464 243 218 5 chr4 40189279 40189485 -162138862 - MIR SINE MIR -6 256 7 806 158 8 15 chr4 40189746 40189879 -162138468 - FLAM_C SINE Alu 0 133 2 2469 73 0 7 chr4 40189886 40190188 -162138159 - AluSg SINE Alu -10 300 1 2115 110 7 0 chr4 40192193 40192475 -162135872 + AluSx SINE Alu 11 294 -18 2282 114 0 0 chr4 40194120 40194428 -162133919 - AluSx SINE Alu -4 308 1 1461 194 72 118 chr4 40194714 40195176 -162133171 + MLT1D LTR MaLR 1 439 -66 2209 109 0 0 chr4 40195176 40195487 -162132860 - AluSx SINE Alu 0 311 1 1461 194 72 118 chr4 40195487 40195550 -162132797 + MLT1D LTR MaLR 439 503 -2 314 239 0 0 chr4 40195703 40195770 -162132577 + L2 LINE L2 3204 3270 -2 260 305 38 0 chr4 40195919 40196024 -162132323 + MIR SINE MIR 111 219 -43 433 193 24 12 chr4 40196506 40196672 -162131675 + CT-rich Low_complexity Low_complexity 5 172 0 256 267 27 0 chr4 40196968 40197043 -162131304 + GA-rich Low_complexity Low_complexity 6 82 0 2152 44 0 4 chr4 40198147 40198399 -162129948 + AluY SINE Alu 60 310 -1 3105 192 112 39 chr4 40198621 40199464 -162128883 + L1MC4 LINE L1 6915 7818 -224 * 22566 146 30 16 chr4 40199461 40202750 -162125597 + L1MA3 LINE L1 10 3254 -4470 2117 105 27 10 chr4 40202750 40203045 -162125302 - AluSx SINE Alu -12 300 1 22566 146 30 16 chr4 40203045 40207362 -162120985 + L1MA3 LINE L1 3254 7724 0 23 33 0 0 chr4 40207362 40207392 -162120955 + AT_rich Low_complexity Low_complexity 1 30 0 421 276 129 43 chr4 40207537 40207619 -162120728 + L1ME LINE L1 5382 5456 -665 2333 108 0 0 chr4 40207619 40207916 -162120431 - AluSg SINE Alu -11 299 3 421 276 129 43 chr4 40207916 40208112 -162120235 + L1ME LINE L1 5456 5684 -437 301 299 186 5 chr4 40208367 40208561 -162119786 + MIR SINE MIR 2 230 -32 265 239 91 0 chr4 40208749 40208837 -162119510 + L1MC4 LINE L1 7933 8028 -14 1065 185 12 33 chr4 40208867 40208908 -162119439 + L1MC4 LINE L1 7804 7844 -198 1687 164 74 3 chr4 40208908 40209244 -162119103 + MER46B DNA MER2_type 2 236 0 1065 185 12 33 chr4 40209244 40209445 -162118902 + L1MC4 LINE L1 7844 8041 -1 2848 13 0 13 chr4 40209461 40209776 -162118571 + AluYa5 SINE Alu 1 311 0 2248 108 3 25 chr4 40209895 40210027 -162118320 + AluSx SINE Alu 1 134 -178 2256 65 0 0 chr4 40210027 40210289 -162118058 + AluY SINE Alu 38 299 -12 2248 108 3 25 chr4 40210289 40210471 -162117876 + AluSx SINE Alu 134 308 -4 2441 44 0 60 chr4 40211529 40211847 -162116500 + AluY SINE Alu 1 299 -12 2521 84 0 3 chr4 40212328 40212637 -162115710 + AluSq SINE Alu 1 308 -5 546 246 91 82 chr4 40213143 40213375 -162114972 - MER106B DNA MER1_type -2 1057 1 1456 209 75 3 chr4 40213733 40214054 -162114293 + MER2 DNA MER2_type 1 344 -1 264 271 0 0 chr4 40214459 40214518 -162113829 + (CA)n Simple_repeat Simple_repeat 2 60 0 549 311 38 4 chr4 40215042 40215277 -162113070 - MIR SINE MIR -4 258 16 1453 192 177 85 chr4 40215768 40216485 -162111862 + MER21B LTR ERV1 21 871 -60 326 236 36 64 chr4 40217547 40217655 -162110692 + MIR SINE MIR 64 170 -92 2175 92 18 11 chr4 40217655 40217988 -162110359 - AluSx SINE Alu 0 335 1 326 236 36 64 chr4 40217988 40218018 -162110329 + MIR SINE MIR 170 199 -63 400 275 17 0 chr4 40218113 40218233 -162110114 + MIR SINE MIR 5 126 -136 390 258 177 29 chr4 40218832 40219041 -162109306 + MIR SINE MIR 1 240 -22 918 203 84 4 chr4 40219616 40219843 -162108504 + L1MB3 LINE L1 5932 6176 -7 1903 158 17 0 chr4 40219955 40220253 -162108094 - AluJo SINE Alu -9 303 1 327 244 42 50 chr4 40220253 40220372 -162107975 - MIR SINE MIR -97 165 48 205 188 0 47 chr4 40222179 40222243 -162106104 + (TTAAA)n Simple_repeat Simple_repeat 3 63 0 642 229 63 58 chr4 40223125 40223330 -162105017 + MIR SINE MIR 1 206 -56 378 211 90 75 chr4 40223344 40223477 -162104870 - L2 LINE L2 -12 3301 3167 313 278 26 43 chr4 40223574 40223689 -162104658 - L2 LINE L2 -1 3271 3159 1620 137 7 50 chr4 40224027 40224305 -162104042 + AluSx SINE Alu 36 301 -11 555 157 0 0 chr4 40224403 40224486 -162103861 + AluS SINE Alu 2 84 -228 1043 137 43 0 chr4 40224783 40224944 -162103403 + LTR28 LTR ERV1 1 168 -852 1042 188 80 80 chr4 40224941 40225302 -162103045 + LTR27 LTR ERV1 276 636 0 * 257 219 49 12 chr4 40226145 40226227 -162102120 + MIR SINE MIR 69 153 -109 1771 116 51 18 chr4 40226266 40226541 -162101806 + MER4C LTR ERV1 8 291 -174 936 166 0 6 chr4 40226686 40226843 -162101504 + MER4C LTR ERV1 310 465 0 732 229 60 37 chr4 40226856 40227074 -162101273 + MLT1G1 LTR MaLR 75 297 -298 666 199 41 34 chr4 40227133 40227279 -162101068 + MLT1G1 LTR MaLR 447 593 -2 243 258 30 15 chr4 40227280 40227346 -162101001 + MIR SINE MIR 158 224 -38 1227 163 0 28 chr4 40227389 40227604 -162100743 - MER3 DNA MER1_type 0 209 1 296 225 188 59 chr4 40227878 40228234 -162100113 + L1ME4a LINE L1 5707 6108 -13 25 0 0 0 chr4 40228469 40228494 -162099853 + AT_rich Low_complexity Low_complexity 1 25 0 1864 149 203 20 chr4 40228508 40228903 -162099444 + MLT1C LTR MaLR 1 467 0 3249 157 48 21 chr4 40229130 40229735 -162098612 + L1MB1 LINE L1 5543 6163 -5 1514 205 16 93 chr4 40229771 40230200 -162098147 + MSTD LTR MaLR 1 396 0 203 161 48 32 chr4 40230395 40230457 -162097890 + A-rich Low_complexity Low_complexity 1 63 0 7409 87 51 2 chr4 40231009 40232168 -162096179 - L1P2 LINE L1 -722 5432 4233 244 304 0 22 chr4 40236043 40236135 -162092212 + L2 LINE L2 3183 3272 0 292 330 65 10 chr4 40236366 40236596 -162091751 - MIR3 SINE MIR -14 248 5 883 89 0 0 chr4 40239882 40239994 -162088353 + LTR8 LTR ERV1 580 691 0 1382 143 44 177 chr4 40239994 40240400 -162087947 + MSTB LTR MaLR 75 426 0 796 192 5 96 chr4 40240572 40240703 -162087644 - MER5A DNA MER1_type 0 189 82 1786 169 36 0 chr4 40240703 40241004 -162087343 - AluSx SINE Alu 0 312 1 796 192 5 96 chr4 40241004 40241080 -162087267 - MER5A DNA MER1_type -107 82 1 371 204 56 19 chr4 40241156 40241264 -162087083 - MER34 LTR ERV1 -3 539 428 2052 116 0 27 chr4 40241788 40242081 -162086266 - AluSg1 SINE Alu -20 289 5 4015 80 25 4 chr4 40242192 40242717 -162085630 + LTR17 LTR ERV1 1 536 -244 1327 148 17 25 chr4 40242819 40243055 -162085292 + L1PA16 LINE L1 5933 6166 0 1761 152 0 62 chr4 40243082 40243404 -162084943 - AluJo SINE Alu -10 302 1 299 311 25 19 chr4 40243407 40243568 -162084779 + LTR23 LTR ERV1 276 437 0 338 289 67 0 chr4 40243595 40243699 -162084648 - MER34B LTR ERV1 -3 562 452 1856 134 10 3 chr4 40243700 40243990 -162084357 + MER50 LTR ERV1 2 293 -441 2162 101 0 17 chr4 40244382 40244678 -162083669 + AluSx SINE Alu 14 304 -8 184 250 0 36 chr4 40245154 40245210 -162083137 - MIR SINE MIR -97 165 112 2442 101 0 0 chr4 40245243 40245551 -162082796 - AluSg SINE Alu -2 308 1 253 348 32 37 chr4 40245689 40245876 -162082471 + MIR SINE MIR 6 191 -71 254 116 93 0 chr4 40247047 40247090 -162081257 + MLT2F LTR ERVL 617 663 0 252 231 104 127 chr4 40247091 40247199 -162081148 + MIR SINE MIR 78 187 -75 2130 128 0 3 chr4 40247199 40247511 -162080836 + AluSx SINE Alu 1 311 -1 252 231 104 127 chr4 40247511 40247524 -162080823 + MIR SINE MIR 187 199 -63 2634 39 16 0 chr4 40247524 40247829 -162080518 + AluY SINE Alu 1 310 -1 252 231 104 127 chr4 40247829 40247879 -162080468 + MIR SINE MIR 199 246 -16 2181 134 0 0 chr4 40248395 40248701 -162079646 + AluSx SINE Alu 1 306 -6 302 227 92 135 chr4 40250002 40250130 -162078217 + L1M2a LINE L1 1073 1205 -5963 255 181 14 42 chr4 40250130 40250202 -162078145 + (CCCCG)n Simple_repeat Simple_repeat 1 70 0 302 227 92 135 chr4 40250202 40250284 -162078063 + L1M2a LINE L1 1205 1342 -5826 198 200 42 116 chr4 40251141 40251236 -162077111 + L2 LINE L2 3222 3309 -4 885 238 60 0 chr4 40251814 40251982 -162076365 - MER45A DNA AcHobo 0 178 1 2540 61 0 3 chr4 40252119 40252430 -162075917 + AluY SINE Alu 1 310 -1 211 248 277 10 chr4 40252507 40252608 -162075739 - MIR3 SINE MIR -37 171 44 193 244 12 12 chr4 40252711 40252793 -162075554 + GA-rich Low_complexity Low_complexity 3 84 0 206 341 123 35 chr4 40253122 40253292 -162075055 - MIR SINE MIR -62 200 16 2604 50 0 0 chr4 40254017 40254318 -162074029 + AluY SINE Alu 1 301 -10 261 294 178 27 chr4 40254324 40254470 -162073877 + MIR3 SINE MIR 28 195 -13 1175 168 57 10 chr4 40254518 40254727 -162073620 - MER20 DNA MER1_type 0 219 1 206 347 11 32 chr4 40254729 40254824 -162073523 - L2 LINE L2 -177 3095 3003 830 148 23 0 chr4 40255130 40255258 -162073089 + FLAM_C SINE Alu 2 132 -1 1941 124 0 4 chr4 40256046 40256319 -162072028 + AluJb SINE Alu 40 311 -1 1996 203 20 18 chr4 40256677 40257072 -162071275 + MSTD LTR MaLR 1 396 0 234 191 21 0 chr4 40257128 40257175 -162071172 + MER91A DNA MER1_type 2 49 -147 922 134 45 40 chr4 40258538 40258673 -162069674 - Charlie5 DNA MER1_type -11 2574 2436 2537 127 3 25 chr4 40258673 40259036 -162069311 - THE1A LTR MaLR 0 355 1 922 134 45 40 chr4 40259036 40259101 -162069246 - Charlie5 DNA MER1_type -149 2436 2373 416 67 17 0 chr4 40259638 40259698 -162068649 + (TC)n Simple_repeat Simple_repeat 2 62 0 799 200 13 7 chr4 40259849 40259999 -162068348 + Charlie4 DNA MER1_type 17 167 -1794 970 172 0 70 chr4 40260015 40260201 -162068146 - AluJo SINE Alu -139 173 1 625 144 9 9 chr4 40260206 40260317 -162068030 + Charlie4 DNA MER1_type 1823 1933 -28 387 60 0 0 chr4 40260321 40260371 -162067976 + (CA)n Simple_repeat Simple_repeat 1 50 0 207 0 0 0 chr4 40260690 40260713 -162067634 + (TC)n Simple_repeat Simple_repeat 1 23 0 897 285 62 27 chr4 40260739 40261160 -162067187 + LTR16A LTR ERVL 1 444 -6 1807 153 31 11 chr4 40261351 40261638 -162066709 - AluSx SINE Alu -19 293 1 2130 94 7 7 chr4 40261882 40262170 -162066177 + AluSg SINE Alu 1 288 -22 1130 202 158 97 chr4 40262396 40262673 -162065674 + MLT1D LTR MaLR 2 321 -184 2478 67 0 6 chr4 40262673 40262986 -162065361 + AluY SINE Alu 1 311 0 1130 202 158 97 chr4 40262986 40263183 -162065164 + MLT1D LTR MaLR 321 505 0 215 360 0 13 chr4 40263614 40263689 -162064658 + L2 LINE L2 3185 3258 -14 222 118 0 0 chr4 40263692 40263726 -162064621 + (T)n Simple_repeat Simple_repeat 1 34 0 696 132 47 0 chr4 40263728 40263834 -162064513 - HY1 scRNA scRNA -1 111 1 2302 97 3 7 chr4 40265419 40265728 -162062619 - AluSq SINE Alu -5 308 1 401 218 11 0 chr4 40265992 40266079 -162062268 - L1ME4a LINE L1 -235 5886 5799 1074 178 29 29 chr4 40266307 40266515 -162061832 + MER3 DNA MER1_type 1 208 -1 1815 148 11 4 chr4 40266540 40266818 -162061529 + AluJb SINE Alu 1 280 -32 30 0 0 0 chr4 40266943 40266973 -162061374 + AT_rich Low_complexity Low_complexity 1 30 0 270 277 128 11 chr4 40267721 40267815 -162060532 + L2 LINE L2 3168 3272 0 245 282 56 61 chr4 40267879 40267991 -162060356 - MIR SINE MIR -62 146 56 2196 131 0 13 chr4 40267991 40268304 -162060043 - AluSx SINE Alu -3 309 1 245 282 56 61 chr4 40268304 40268342 -162060005 - MIR SINE MIR -152 56 19 1070 190 24 6 chr4 40268421 40268739 -162059608 - MLT1C-int LTR MaLR -924 447 2 2148 127 10 3 chr4 40268742 40269050 -162059297 - AluSq SINE Alu -3 310 1 2080 204 76 7 chr4 40269058 40269494 -162058853 - MLT1C LTR MaLR -1 466 1 465 269 19 19 chr4 40269537 40269693 -162058654 - L1ME3A LINE L1 -78 6092 5937 * 3011 136 54 17 chr4 40269672 40270194 -162058153 - L1MB7 LINE L1 -5 6179 5639 821 144 0 0 chr4 40270857 40270975 -162057372 - FLAM_C SINE Alu -25 118 1 611 246 79 12 chr4 40271090 40271330 -162057017 - L1ME3A LINE L1 -219 5951 5696 841 131 86 157 chr4 40271332 40271696 -162056651 + LTR32 LTR ERVL 15 466 -5 354 183 0 0 chr4 40271707 40271778 -162056569 + (CATATA)n Simple_repeat Simple_repeat 4 74 0 301 266 0 43 chr4 40271781 40271875 -162056472 - L1MC4 LINE L1 -1339 6703 6614 500 211 11 38 chr4 40271880 40272065 -162056282 + (CATATA)n Simple_repeat Simple_repeat 1 180 0 230 262 95 24 chr4 40272070 40272154 -162056193 - L1MC4 LINE L1 -1339 6703 6614 236 198 0 116 chr4 40272174 40272260 -162056087 + L1MC3 LINE L1 6571 6646 -1139 240 233 0 0 chr4 40272260 40272333 -162056014 + (CATATA)n Simple_repeat Simple_repeat 6 78 0 400 244 23 0 chr4 40272345 40272517 -162055830 + (CATATA)n Simple_repeat Simple_repeat 5 180 0 2059 96 4 4 chr4 40272531 40272822 -162055525 - AluY SINE Alu 0 302 12 591 258 74 26 chr4 40272867 40273057 -162055290 - L1ME3A LINE L1 -523 5639 5441 703 266 140 29 chr4 40273057 40273365 -162054982 - MLT1H LTR MaLR 0 549 208 1460 241 87 66 chr4 40273511 40273621 -162054726 - L1ME3A LINE L1 -735 5435 5329 2057 120 3 7 chr4 40273621 40273955 -162054392 - AluSx SINE Alu 0 333 1 1460 241 87 66 chr4 40273955 40274943 -162053404 - L1ME3A LINE L1 -841 5329 4299 2102 119 0 33 chr4 40274943 40275246 -162053101 + AluSx SINE Alu 3 295 -17 1460 241 87 66 chr4 40275246 40275506 -162052841 - L1ME3A LINE L1 -1871 4299 4046 523 274 15 50 chr4 40275937 40276010 -162052337 - MIR SINE MIR -46 216 142 595 197 32 75 chr4 40276010 40276198 -162052149 + MER104 DNA MER2_type 1 180 0 523 274 15 50 chr4 40276198 40276325 -162052022 - MIR SINE MIR -120 142 23 4372 136 69 80 chr4 40276407 40276941 -162051406 - MER4D LTR ERV1 0 903 382 2496 60 0 3 chr4 40276941 40277243 -162051104 + AluY SINE Alu 1 301 -10 4372 136 69 80 chr4 40277243 40277617 -162050730 - MER4D LTR ERV1 -521 382 5 181 306 81 36 chr4 40277782 40277893 -162050454 - L2 LINE L2 -4 3268 3153 786 259 82 0 chr4 40278220 40278440 -162049907 - LTR16C LTR ERVL -66 425 188 539 246 35 14 chr4 40279369 40279511 -162048836 + MIR SINE MIR 107 251 -11 218 184 0 0 chr4 40280107 40280145 -162048202 - MIR SINE MIR -65 197 160 189 107 0 0 chr4 40280302 40280330 -162048017 + (CAA)n Simple_repeat Simple_repeat 2 29 0 377 200 35 70 chr4 40280649 40280764 -162047583 + MIR SINE MIR 87 197 -65 373 270 0 0 chr4 40280764 40280864 -162047483 + L1ME3 LINE L1 5066 5165 -981 1424 245 107 88 chr4 40280905 40281003 -162047344 + MLT1G1 LTR MaLR 3 98 -497 2512 68 0 0 chr4 40281003 40281312 -162047035 + AluY SINE Alu 1 309 -2 1424 245 107 88 chr4 40281312 40281793 -162046554 + MLT1G1 LTR MaLR 98 593 -2 311 246 63 28 chr4 40281794 40281936 -162046411 + MLT1G1-int LTR MaLR 4 150 -1221 588 295 25 73 chr4 40281944 40282259 -162046088 + MLT1G1-int LTR MaLR 307 606 -765 189 0 0 0 chr4 40282592 40282613 -162045734 + (T)n Simple_repeat Simple_repeat 1 21 0 372 306 111 64 chr4 40282823 40283212 -162045135 + MLT1G1-int LTR MaLR 961 1367 -4 1059 245 97 92 chr4 40283216 40283635 -162044712 + MLT1G1 LTR MaLR 1 425 -170 2288 73 0 61 chr4 40283635 40283963 -162044384 + AluY SINE Alu 1 308 -3 1059 245 97 92 chr4 40283963 40284131 -162044216 + MLT1G1 LTR MaLR 425 591 -4 1020 244 67 42 chr4 40284147 40284188 -162044159 + L1ME3 LINE L1 5280 5318 -844 3709 122 61 0 chr4 40284188 40284729 -162043618 + L1PA15 LINE L1 5592 6165 0 1020 244 67 42 chr4 40284729 40285044 -162043303 + L1ME3 LINE L1 5318 5645 -517 1169 152 0 0 chr4 40285075 40285246 -162043101 + AluJb SINE Alu 128 298 -14 593 191 27 66 chr4 40285253 40285436 -162042911 + L1ME3 LINE L1 5984 6159 -3 2340 99 0 0 chr4 40285443 40285735 -162042612 + AluSg1 SINE Alu 1 292 -17 334 232 0 0 chr4 40285739 40285808 -162042539 + MIR SINE MIR 193 261 -1 670 302 133 27 chr4 40286742 40287405 -162040942 + L2 LINE L2 2531 3272 0 1160 152 0 0 chr4 40287831 40288002 -162040345 + AluJb SINE Alu 142 312 0 1216 135 0 0 chr4 40288344 40288514 -162039833 + AluSq SINE Alu 130 299 -14 2167 110 0 0 chr4 40289241 40289546 -162038801 + AluSx SINE Alu 1 305 0 234 91 0 0 chr4 40291313 40291346 -162037001 + (CA)n Simple_repeat Simple_repeat 1 33 0 419 35 0 17 chr4 40291826 40291884 -162036463 + (TG)n Simple_repeat Simple_repeat 2 58 0 3704 130 2 2 chr4 40292872 40293412 -162034935 - L1PA13 LINE L1 0 6163 5624 682 0 45 0 chr4 40293421 40293509 -162034838 + (TATAA)n Simple_repeat Simple_repeat 1 92 0 1942 74 0 8 chr4 40293586 40293830 -162034517 - AluY SINE Alu -11 300 59 250 272 40 24 chr4 40293831 40293956 -162034391 + L1MC2 LINE L1 3759 3885 -2261 2014 161 3 54 chr4 40293961 40294351 -162033996 + MLT1B LTR MaLR 2 371 -19 759 304 78 17 chr4 40294375 40294950 -162033397 + L1MC2 LINE L1 3891 4500 -1646 4793 192 20 41 chr4 40295124 40296339 -162032008 + L1MC2 LINE L1 5127 6318 -26 575 273 61 31 chr4 40296333 40296626 -162031721 + L1ME1 LINE L1 5791 6092 -74 * 339 277 28 11 chr4 40296987 40297164 -162031183 + (TA)n Simple_repeat Simple_repeat 1 180 0 458 85 0 0 chr4 40297171 40297230 -162031117 - AluSp/q SINE Alu -20 293 235 30 0 0 0 chr4 40297230 40297260 -162031087 + AT_rich Low_complexity Low_complexity 1 30 0 195 170 0 0 chr4 40297271 40297318 -162031029 + (TA)n Simple_repeat Simple_repeat 1 47 0 270 232 28 39 chr4 40297412 40297593 -162030754 + (TA)n Simple_repeat Simple_repeat 2 180 0 26 74 0 0 chr4 40298483 40298537 -162029810 + AT_rich Low_complexity Low_complexity 1 54 0 726 272 54 14 chr4 40298557 40298833 -162029514 + L1M4 LINE L1 4068 4354 -1792 5991 60 11 4 chr4 40298928 40299679 -162028668 + MER4E LTR ERV1 1 756 -10 243 0 0 0 chr4 40299684 40299711 -162028636 + (CA)n Simple_repeat Simple_repeat 2 28 0 575 307 75 16 chr4 40299724 40300112 -162028235 + L1M4 LINE L1 4473 4883 -1263 424 215 264 0 chr4 40300340 40300484 -162027863 + Charlie4 DNA MER1_type 14 195 -1766 2322 99 0 16 chr4 40300839 40301152 -162027195 - AluSg SINE Alu -2 308 1 2520 58 3 6 chr4 40301520 40301832 -162026515 - AluY SINE Alu 0 311 1 1043 184 0 0 chr4 40302389 40302563 -162025784 + AluJb SINE Alu 137 310 -2 192 257 69 20 chr4 40303074 40303175 -162025172 + L2 LINE L2 2231 2336 -978 691 298 89 17 chr4 40304277 40304740 -162023607 + MLT1D LTR MaLR 3 498 -7 1402 183 27 40 chr4 40307225 40307395 -162020952 - AluJo SINE Alu -16 296 130 1994 110 28 3 chr4 40307395 40307686 -162020661 - AluSx SINE Alu -14 298 1 1402 183 27 40 chr4 40307686 40307815 -162020532 - AluJo SINE Alu -182 130 1 1992 144 0 13 chr4 40308093 40308391 -162019956 + AluSx SINE Alu 1 294 -18 2529 67 0 3 chr4 40309807 40310107 -162018240 + AluY SINE Alu 1 299 -12 554 203 133 22 chr4 40310516 40310752 -162017595 - L1MCa LINE L1 -3951 2475 2270 1107 213 49 0 chr4 40310753 40310997 -162017350 - L1MCa LINE L1 -5693 733 478 1283 84 0 0 chr4 40310997 40311152 -162017195 + AluSg/x SINE Alu 137 291 -21 1268 263 7 0 chr4 40311153 40311423 -162016924 - L1MCa LINE L1 -5942 484 213 2548 99 31 6 chr4 40312044 40312399 -162015948 + THE1B LTR MaLR 1 364 0 357 237 21 10 chr4 40312750 40312847 -162015500 - MER5A DNA MER1_type -1 188 91 182 234 65 39 chr4 40313092 40313169 -162015178 - MIR SINE MIR -116 146 68 23 0 0 0 chr4 40313311 40313334 -162015013 + AT_rich Low_complexity Low_complexity 1 23 0 2165 118 0 3 chr4 40313382 40313679 -162014668 - AluSx SINE Alu -16 296 1 2108 144 0 0 chr4 40313741 40314053 -162014294 - AluSx SINE Alu 0 312 1 2193 121 18 49 chr4 40316518 40316905 -162011442 + THE1C LTR MaLR 1 375 0 10847 106 9 33 chr4 40316906 40318525 -162009822 + THE1C-int LTR MaLR 2 1580 0 2221 122 24 27 chr4 40318525 40318901 -162009446 + THE1C LTR MaLR 1 375 0 188 163 23 0 chr4 40319560 40319603 -162008744 + (CA)n Simple_repeat Simple_repeat 1 44 0 1919 128 14 10 chr4 40319845 40320134 -162008213 - AluSx SINE Alu -22 290 1 231 36 0 0 chr4 40320268 40320296 -162008051 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 322 26 0 0 chr4 40321070 40321109 -162007238 + L1PA8 LINE L1 6127 6165 -7 1352 192 0 33 chr4 40321990 40322266 -162006081 + AluJo SINE Alu 1 267 -45 324 336 79 0 chr4 40322894 40323034 -162005313 + MIR SINE MIR 12 162 -100 224 170 19 0 chr4 40324710 40324763 -162003584 + (CAGAA)n Simple_repeat Simple_repeat 2 55 0 252 289 13 0 chr4 40325645 40325721 -162002626 + MER103 DNA DNA 13 89 -77 559 294 20 15 chr4 40327331 40327535 -162000812 + MIR SINE MIR 12 216 -46 13336 115 42 11 chr4 40329014 40331097 -161997250 - Tigger1 DNA MER2_type 0 2418 272 1648 162 0 82 chr4 40331282 40331597 -161996750 + AluJb SINE Alu 1 289 -23 288 0 0 0 chr4 40332285 40332317 -161996030 + (CA)n Simple_repeat Simple_repeat 1 32 0 376 308 140 14 chr4 40333051 40333265 -161995082 - MER112 DNA MER1_type -17 243 3 2040 142 0 3 chr4 40335766 40336061 -161992286 + AluSx SINE Alu 1 294 -18 1998 140 0 17 chr4 40338657 40338950 -161989397 - AluSx SINE Alu -24 288 1 1959 156 0 13 chr4 40339963 40340271 -161988076 - AluJo SINE Alu -8 304 1 375 259 71 0 chr4 40341320 40341432 -161986915 - MIR3 SINE MIR -52 156 37 1900 145 3 7 chr4 40341642 40341925 -161986422 - AluJo SINE Alu -25 287 6 494 174 10 0 chr4 40342413 40342511 -161985836 - L1MA5 LINE L1 0 6300 6202 249 56 111 0 chr4 40342708 40342744 -161985603 - L1MA6 LINE L1 -101 6199 6160 180 0 0 0 chr4 40342882 40342902 -161985445 + (T)n Simple_repeat Simple_repeat 1 20 0 347 232 168 0 chr4 40343432 40343527 -161984820 + MIR SINE MIR 51 161 -101 460 224 239 0 chr4 40345655 40345789 -161982558 + MER5A DNA MER1_type 14 179 -10 186 325 0 36 chr4 40346280 40346363 -161981984 - MIR SINE MIR -29 233 154 315 216 62 31 chr4 40346364 40346461 -161981886 - L1ME3 LINE L1 -3 6159 6060 251 264 17 0 chr4 40346474 40346566 -161981781 - L1MB1 LINE L1 -197 5967 5872 189 0 0 0 chr4 40350297 40350318 -161978029 + (A)n Simple_repeat Simple_repeat 1 21 0 274 256 22 11 chr4 40350341 40350431 -161977916 + (TA)n Simple_repeat Simple_repeat 2 92 0 202 130 19 19 chr4 40352019 40352073 -161976274 + (TA)n Simple_repeat Simple_repeat 2 55 0 2357 108 0 9 chr4 40353241 40353556 -161974791 - AluSx SINE Alu 0 312 1 220 316 118 15 chr4 40353799 40353935 -161974412 + L2 LINE L2 2716 2865 -449 204 313 112 45 chr4 40354142 40354276 -161974071 + L2 LINE L2 3125 3267 -5 197 286 143 42 chr4 40354405 40354524 -161973823 - L2 LINE L2 -1 3271 3141 265 341 22 71 chr4 40354738 40354920 -161973427 - MIR3 SINE MIR -17 191 19 338 204 64 30 chr4 40355338 40355479 -161972868 + MLT1H LTR MaLR 250 549 0 1606 190 133 3 chr4 40356680 40357049 -161971298 + Charlie4a DNA MER1_type 5 421 -87 26 0 0 0 chr4 40357604 40357630 -161970717 + AT_rich Low_complexity Low_complexity 1 26 0 195 42 0 0 chr4 40358263 40358287 -161970060 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1690 166 16 7 chr4 40358733 40359040 -161969307 + AluJb SINE Alu 1 310 -2 1623 143 136 10 chr4 40359571 40359872 -161968475 + MER44D DNA MER2_type 1 609 0 840 282 145 28 chr4 40362027 40362198 -161966149 - L2 LINE L2 -3 3310 3161 2009 98 36 0 chr4 40362198 40362472 -161965875 + AluSx SINE Alu 1 284 -28 441 0 0 0 chr4 40362472 40362521 -161965826 + (CATA)n Simple_repeat Simple_repeat 2 50 0 840 282 145 28 chr4 40362521 40363098 -161965249 - L2 LINE L2 -151 3162 2469 2241 83 38 0 chr4 40364107 40364397 -161963950 + AluSp SINE Alu 1 301 -12 1627 148 37 30 chr4 40365021 40365319 -161963028 - AluJb SINE Alu -12 300 1 2097 108 9 32 chr4 40365948 40366263 -161962084 + AluSq SINE Alu 1 308 -5 2233 102 3 0 chr4 40367743 40368038 -161960309 - AluSx SINE Alu -13 299 4 232 298 99 33 chr4 40369595 40369716 -161958631 + MIR SINE MIR 134 262 0 631 266 48 29 chr4 40370526 40370733 -161957614 + L3 LINE CR1 937 1147 -430 1604 141 59 59 chr4 40370763 40371069 -161957278 + AluJo SINE Alu 1 306 -6 198 0 0 0 chr4 40371261 40371283 -161957064 + (A)n Simple_repeat Simple_repeat 1 22 0 423 62 62 0 chr4 40372538 40372603 -161955744 + MER41B LTR ERV1 481 549 -86 200 35 35 0 chr4 40372914 40372943 -161955404 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 805 139 9 0 chr4 40372945 40373060 -161955287 - FLAM_C SINE Alu -17 116 1 795 250 46 124 chr4 40374236 40374494 -161953853 + L1MC4 LINE L1 7501 7689 -353 2318 99 3 0 chr4 40374494 40374798 -161953549 + AluSq SINE Alu 1 305 -8 795 250 46 124 chr4 40374798 40375127 -161953220 + L1MC4 LINE L1 7689 8042 0 536 240 55 7 chr4 40375154 40375300 -161953047 + L1MA10 LINE L1 6175 6327 -7 306 0 0 0 chr4 40375300 40375334 -161953013 + (CA)n Simple_repeat Simple_repeat 2 35 0 210 158 42 0 chr4 40375570 40375618 -161952729 + MIR SINE MIR 97 148 -62 22 0 0 0 chr4 40376135 40376157 -161952190 + AT_rich Low_complexity Low_complexity 1 22 0 202 348 27 36 chr4 40377306 40377418 -161950929 + L2 LINE L2 2214 2324 -990 203 100 0 50 chr4 40377846 40377886 -161950461 + (TTCA)n Simple_repeat Simple_repeat 4 41 0 216 143 44 22 chr4 40377968 40378059 -161950288 + (TA)n Simple_repeat Simple_repeat 1 93 0 2291 112 3 0 chr4 40378143 40378448 -161949899 + AluSx SINE Alu 1 306 -6 260 236 0 36 chr4 40378473 40378613 -161949734 + (TA)n Simple_repeat Simple_repeat 1 135 0 210 269 65 0 chr4 40379349 40379442 -161948905 - MIR3 SINE MIR -14 194 96 718 151 8 8 chr4 40379640 40379766 -161948581 - L1MA4A LINE L1 -11 6292 6167 241 296 37 0 chr4 40381078 40381159 -161947188 + L2 LINE L2 2242 2325 -989 1851 188 9 15 chr4 40381171 40381512 -161946835 - MER34B LTR ERV1 -176 389 51 1838 174 91 43 chr4 40381512 40381950 -161946397 - LTR2B LTR ERV1 0 490 32 470 119 0 0 chr4 40381967 40382040 -161946307 - MER34C LTR ERV1 -472 93 1 263 261 26 124 chr4 40382606 40382759 -161945588 - L2 LINE L2 -3 3310 3173 21 0 0 0 chr4 40383866 40383887 -161944460 + AT_rich Low_complexity Low_complexity 1 21 0 3043 147 39 13 chr4 40383911 40384505 -161943842 + MER39 LTR ERV1 19 707 0 1091 216 35 94 chr4 40384543 40384946 -161943401 + LTR37B LTR ERV1 90 468 0 225 205 13 39 chr4 40385233 40385311 -161943036 + (TA)n Simple_repeat Simple_repeat 2 77 0 2117 180 115 22 chr4 40385579 40385664 -161942683 - MLT1D LTR MaLR 0 505 429 1037 64 41 177 chr4 40385664 40385884 -161942463 - MER30B DNA MER1_type 0 190 1 2117 180 115 22 chr4 40385884 40386260 -161942087 - MLT1D LTR MaLR -76 429 1 496 275 126 0 chr4 40386322 40386489 -161941858 - MER5A DNA MER1_type -1 188 1 24 32 0 0 chr4 40386582 40386613 -161941734 + AT_rich Low_complexity Low_complexity 1 31 0 439 270 38 87 chr4 40386731 40386852 -161941495 + MIR SINE MIR 87 197 -65 2328 97 0 0 chr4 40386852 40387152 -161941195 + AluY SINE Alu 2 301 -10 439 270 38 87 chr4 40387152 40387215 -161941132 + MIR SINE MIR 197 262 0 2969 82 3 6 chr4 40388503 40388868 -161939479 - THE1B LTR MaLR 0 364 1 244 225 69 4 chr4 40388884 40388958 -161939389 - MIR SINE MIR -66 142 69 566 175 0 0 chr4 40388978 40389058 -161939289 + AluS SINE Alu 1 80 -233 566 217 123 91 chr4 40389105 40389358 -161938989 - MIR SINE MIR 0 262 2 2248 104 0 0 chr4 40389421 40389710 -161938637 - AluSq SINE Alu -24 289 1 186 343 130 0 chr4 40390777 40390885 -161937462 + L2 LINE L2 3190 3311 -2 8387 166 67 38 chr4 40391077 40391704 -161936643 + L1MC3 LINE L1 5938 6545 -1240 1313 212 89 43 chr4 40391704 40392053 -161936294 - MLT1A1 LTR MaLR 0 365 1 8387 166 67 38 chr4 40392053 40392985 -161935362 + L1MC3 LINE L1 6545 7448 -337 2072 126 3 3 chr4 40392985 40393279 -161935068 + AluSx SINE Alu 1 294 -18 8387 166 67 38 chr4 40393279 40393321 -161935026 + L1MC3 LINE L1 7448 7487 -298 258 32 0 0 chr4 40393321 40393352 -161934995 + (CA)n Simple_repeat Simple_repeat 2 32 0 8387 166 67 38 chr4 40393352 40393537 -161934810 + L1MC3 LINE L1 7487 7779 -6 886 128 0 40 chr4 40394594 40394743 -161933604 - FLAM_C SINE Alu 0 143 1 600 14 0 0 chr4 40394868 40394937 -161933410 + (TTTC)n Simple_repeat Simple_repeat 3 71 0 2068 108 0 0 chr4 40394937 40395216 -161933131 - AluY SINE Alu -32 279 1 1768 194 22 22 chr4 40395542 40395907 -161932440 + MLT1A1 LTR MaLR 1 365 0 253 205 0 0 chr4 40395944 40395983 -161932364 + AluJ/monomer SINE Alu 1 39 -263 1847 175 23 34 chr4 40396667 40397016 -161931331 + MLT1A1 LTR MaLR 1 345 -20 574 226 16 130 chr4 40397381 40397704 -161930643 - MER5C DNA MER1_type 0 324 39 2078 244 21 28 chr4 40397719 40398288 -161930059 + L1ME3A LINE L1 5403 5967 -203 1694 183 0 4 chr4 40398371 40398650 -161929697 + AluJb SINE Alu 1 278 -34 285 146 0 0 chr4 40398656 40398704 -161929643 + (TA)n Simple_repeat Simple_repeat 2 49 0 368 197 152 45 chr4 40398860 40399038 -161929309 - MER5C DNA MER1_type 0 324 128 396 0 0 0 chr4 40399284 40399328 -161929019 + (TG)n Simple_repeat Simple_repeat 2 45 0 2159 115 0 0 chr4 40399330 40399608 -161928739 - AluSc SINE Alu -31 278 1 2047 113 28 3 chr4 40399613 40399896 -161928451 - AluSx SINE Alu -22 290 1 1693 181 0 10 chr4 40400258 40400556 -161927791 + AluJo SINE Alu 11 305 -7 312 240 115 0 chr4 40401302 40401398 -161926949 - MER5C DNA MER1_type -213 111 5 790 169 0 16 chr4 40401880 40402004 -161926343 - FLAM_A SINE Alu -7 126 5 595 309 136 18 chr4 40402004 40402386 -161925961 + L2 LINE L2 2886 3312 -1 416 254 109 70 chr4 40402991 40403192 -161925155 + MIR SINE MIR 40 248 -14 1903 161 16 10 chr4 40403247 40403557 -161924790 - AluJb SINE Alu 0 312 1 1563 259 178 29 chr4 40403669 40404315 -161924032 - L2 LINE L2 -5 3308 2760 1430 208 16 22 chr4 40404315 40404602 -161923745 + AluJo SINE Alu 2 288 -24 243 0 0 0 chr4 40404602 40404629 -161923718 + (TTTAA)n Simple_repeat Simple_repeat 1 27 0 1430 208 16 22 chr4 40404629 40404654 -161923693 + AluJo SINE Alu 288 312 0 1563 259 178 29 chr4 40404654 40405174 -161923173 - L2 LINE L2 -553 2760 1156 1693 137 0 8 chr4 40405193 40405441 -161922906 + AluSq SINE Alu 1 246 -67 2533 134 74 12 chr4 40406144 40406547 -161921800 - MSTA LTR MaLR 0 428 1 1203 285 39 30 chr4 40406666 40407126 -161921221 + MLT1J LTR MaLR 13 476 -35 225 0 0 0 chr4 40407353 40407378 -161920969 + (TTAA)n Simple_repeat Simple_repeat 3 27 0 462 275 39 39 chr4 40407410 40407592 -161920755 + MER5A DNA MER1_type 7 188 -1 2156 127 3 0 chr4 40407649 40407948 -161920399 + AluSq SINE Alu 1 300 -13 2434 116 124 18 chr4 40408387 40408774 -161919573 - MSTA LTR MaLR 0 428 1 183 318 59 12 chr4 40408900 40408985 -161919362 - L2 LINE L2 -4 3309 3221 1520 177 19 105 chr4 40409755 40409904 -161918443 + MER58B DNA MER1_type 2 162 -2258 1568 213 0 10 chr4 40409904 40410195 -161918152 + AluJb SINE Alu 1 288 -24 1520 177 19 105 chr4 40410195 40410417 -161917930 + MER58B DNA MER1_type 162 341 0 241 347 0 0 chr4 40410585 40410657 -161917690 + L2 LINE L2 3136 3207 -65 228 189 0 38 chr4 40410678 40410731 -161917616 + L1MC4 LINE L1 6653 6703 -1339 * 255 175 5 26 chr4 40410700 40410777 -161917570 - L1MCa LINE L1 -1339 6983 1995 203 271 0 0 chr4 40410782 40410830 -161917517 + (CATATA)n Simple_repeat Simple_repeat 3 50 0 225 178 0 0 chr4 40410832 40410877 -161917470 + LTR66 LTR ERVL 395 439 -171 401 254 0 8 chr4 40410877 40411003 -161917344 + (CA)n Simple_repeat Simple_repeat 2 126 0 1820 165 23 96 chr4 40411086 40411480 -161916867 + MLT1A1 LTR MaLR 1 365 0 249 257 57 0 chr4 40411703 40411773 -161916574 - L1MC/D LINE L1 -1894 5914 5841 335 241 17 35 chr4 40412345 40412461 -161915886 - L1MC4a LINE L1 -1973 5835 5722 21 0 0 0 chr4 40412471 40412492 -161915855 + AT_rich Low_complexity Low_complexity 1 21 0 269 348 22 7 chr4 40412686 40412824 -161915523 + L2 LINE L2 2910 3049 -223 4091 149 5 19 chr4 40413115 40413212 -161915135 + MER41B LTR ERV1 1 98 -537 1987 142 7 0 chr4 40413212 40413508 -161914839 - AluSx SINE Alu -14 298 1 4091 149 5 19 chr4 40413508 40414054 -161914293 + MER41B LTR ERV1 98 635 0 415 286 55 39 chr4 40414105 40414287 -161914060 + MIR SINE MIR 20 204 -58 21 36 0 0 chr4 40414587 40414615 -161913732 + AT_rich Low_complexity Low_complexity 1 28 0 753 268 131 63 chr4 40415212 40415784 -161912563 + MLT1L LTR MaLR 5 615 0 2123 134 0 3 chr4 40415926 40416231 -161912116 + AluSx SINE Alu 2 305 -7 2127 133 3 3 chr4 40416549 40416857 -161911490 - AluSx SINE Alu -4 308 1 362 86 0 35 chr4 40416871 40416929 -161911418 - MADE1 DNA Mariner 0 80 25 2134 189 63 37 chr4 40417335 40417414 -161910933 + MLT1D LTR MaLR 1 76 -429 2280 159 19 11 chr4 40417414 40417786 -161910561 + THE1C LTR MaLR 1 375 0 2134 189 63 37 chr4 40417786 40418198 -161910149 + MLT1D LTR MaLR 76 505 0 249 299 216 0 chr4 40418209 40418343 -161910004 - MIR SINE MIR -38 224 62 662 254 17 6 chr4 40418404 40418577 -161909770 - MER5B DNA MER1_type 0 178 4 485 271 60 6 chr4 40418662 40418828 -161909519 - MER5B DNA MER1_type -2 176 2 309 311 60 70 chr4 40419600 40419899 -161908448 - MARNA DNA Mariner -148 438 143 1965 159 0 0 chr4 40419981 40420271 -161908076 + AluJb SINE Alu 1 290 -22 30 0 0 0 chr4 40420271 40420301 -161908046 + AT_rich Low_complexity Low_complexity 1 30 0 612 223 58 0 chr4 40420333 40420472 -161907875 + MIR SINE MIR 106 252 -10 737 298 62 48 chr4 40420532 40421029 -161907318 - MLT1K LTR MaLR -16 572 69 185 289 0 0 chr4 40421144 40421189 -161907158 - L2 LINE L2 -19 3294 3250 708 312 56 4 chr4 40421207 40421438 -161906909 - MIR SINE MIR 0 262 20 385 295 16 8 chr4 40421432 40421554 -161906793 - MIR SINE MIR -54 208 86 * 337 299 28 76 chr4 40421609 40421753 -161906594 + MER91A DNA MER1_type 1 137 -59 1950 116 49 0 chr4 40422237 40422521 -161905826 - AluSx SINE Alu -14 298 1 359 279 62 81 chr4 40422569 40422721 -161905626 + MLT1L LTR MaLR 11 159 -456 407 224 12 0 chr4 40422721 40422806 -161905541 - LTR16C LTR ERVL 0 491 406 413 185 107 24 chr4 40423389 40423503 -161904844 + MLT1J LTR MaLR 59 159 -291 2060 129 0 49 chr4 40424133 40424458 -161903889 - AluJb SINE Alu -3 309 1 249 254 87 32 chr4 40424750 40424876 -161903471 + MLT1J LTR MaLR 379 511 0 2901 19 0 0 chr4 40425300 40425618 -161902729 + AluYb8 SINE Alu 1 318 0 2154 127 0 0 chr4 40426076 40426384 -161901963 + AluSx SINE Alu 1 308 0 2064 142 3 0 chr4 40426984 40427293 -161901054 - AluSx SINE Alu -2 310 1 412 234 18 9 chr4 40427293 40427404 -161900943 - MIR SINE MIR -81 181 70 1059 194 55 5 chr4 40427404 40427605 -161900742 - MLT1D LTR MaLR -294 211 1 418 320 16 31 chr4 40427927 40428055 -161900292 + MER91A DNA MER1_type 44 169 -27 1642 194 7 10 chr4 40428546 40428850 -161899497 + AluJo SINE Alu 1 303 -9 425 337 39 10 chr4 40428991 40429196 -161899151 + MIR SINE MIR 34 244 -18 318 336 27 20 chr4 40429294 40429443 -161898904 - MIR SINE MIR -66 196 47 2145 205 51 24 chr4 40429784 40430276 -161898071 + MLT1D LTR MaLR 1 505 0 214 277 142 5 chr4 40430402 40430544 -161897803 - MIR SINE MIR -19 243 18 342 329 13 44 chr4 40430564 40430722 -161897625 - MIR SINE MIR -58 204 52 1500 158 0 60 chr4 40431444 40431729 -161896618 - AluJb SINE Alu -13 299 32 289 317 50 30 chr4 40431864 40431965 -161896382 + L2 LINE L2 3143 3245 -27 2129 97 7 3 chr4 40431986 40432274 -161896073 + AluSq SINE Alu 1 289 -24 261 267 44 0 chr4 40432429 40432519 -161895828 - MIR3 SINE MIR -23 185 92 200 213 147 80 chr4 40432809 40432884 -161895463 + MIR SINE MIR 20 99 -109 388 237 30 30 chr4 40432989 40433120 -161895227 + LTR16B LTR ERVL 332 462 -2 438 246 57 33 chr4 40433208 40433330 -161895017 - L2 LINE L2 0 3272 3148 1956 198 106 23 chr4 40433686 40434166 -161894181 + MER74A LTR ERVL 1 520 -38 2739 121 36 12 chr4 40434484 40434896 -161893451 - MSTB LTR MaLR -4 422 1 330 288 109 22 chr4 40434976 40435250 -161893097 - MLT1J2 LTR MaLR -124 322 7 305 264 27 64 chr4 40435309 40435419 -161892928 - MIR SINE MIR -110 152 47 21 0 0 0 chr4 40436168 40436189 -161892158 + AT_rich Low_complexity Low_complexity 1 21 0 558 242 160 52 chr4 40436567 40436798 -161891549 - MLT1J2 LTR MaLR -18 432 177 2335 169 93 0 chr4 40436976 40437384 -161890963 + MLT2B1 LTR ERVL 1 446 -74 688 138 83 28 chr4 40437408 40437553 -161890794 + MLT1E1 LTR MaLR 198 350 -304 1726 169 68 0 chr4 40437749 40438063 -161890284 - AluSx SINE Alu 0 337 5 272 258 155 32 chr4 40438232 40438387 -161889960 + L2 LINE L2 2684 2857 -457 21 0 0 0 chr4 40438647 40438668 -161889679 + AT_rich Low_complexity Low_complexity 1 21 0 387 0 0 0 chr4 40438744 40438787 -161889560 + (CA)n Simple_repeat Simple_repeat 2 44 0 697 273 130 9 chr4 40438879 40439110 -161889237 + MIR SINE MIR 2 260 -2 273 98 0 0 chr4 40439174 40439215 -161889132 + (TG)n Simple_repeat Simple_repeat 1 41 0 294 319 17 26 chr4 40439222 40439338 -161889009 + L2 LINE L2 3183 3297 -16 2415 157 38 26 chr4 40439631 40440052 -161888295 + MSTB LTR MaLR 1 426 0 2133 139 0 0 chr4 40440174 40440476 -161887871 + AluSx SINE Alu 5 306 -6 2889 104 3 3 chr4 40440930 40441305 -161887042 - THE1C LTR MaLR 0 375 1 2581 53 0 0 chr4 40442284 40442585 -161885762 - AluY SINE Alu -10 301 1 2248 147 30 41 chr4 40442995 40443068 -161885279 - THE1B LTR MaLR 0 364 292 2256 114 3 0 chr4 40443068 40443365 -161884982 + AluSp SINE Alu 1 298 -15 2248 147 30 41 chr4 40443365 40443659 -161884688 - THE1B LTR MaLR -72 292 1 415 271 23 16 chr4 40444151 40444280 -161884067 - LTR28 LTR ERV1 -54 966 837 508 258 112 39 chr4 40445233 40445411 -161882936 - MIR3 SINE MIR -2 206 16 346 324 49 0 chr4 40445991 40446093 -161882254 - L2 LINE L2 -6 3266 3160 428 302 126 42 chr4 40446415 40446700 -161881647 + L2 LINE L2 2999 3307 -6 860 274 101 42 chr4 40447643 40448262 -161880085 + L1ME4a LINE L1 5445 6101 -16 3386 42 0 0 chr4 40448262 40448648 -161879699 - L1PA4 LINE L1 0 6155 5770 334 78 16 16 chr4 40448672 40448736 -161879611 + (TTTTA)n Simple_repeat Simple_repeat 1 64 0 33446 38 1 0 chr4 40448736 40454644 -161873703 - L1PA3 LINE L1 -24 6131 221 1846 305 73 41 chr4 40454630 40454765 -161873582 + L1MCc LINE L1 262 391 -6032 * 1436 214 177 25 chr4 40454765 40455200 -161873147 + MLT1D LTR MaLR 1 501 -4 1846 305 73 41 chr4 40455200 40456184 -161872163 + L1MCc LINE L1 391 1417 -5006 597 149 25 8 chr4 40456188 40456309 -161872038 + L1M4 LINE L1 2801 2923 -3223 712 233 159 0 chr4 40456967 40457130 -161871217 + MER5A DNA MER1_type 1 189 0 1853 144 3 10 chr4 40457619 40457910 -161870437 - AluSx SINE Alu -15 297 9 2393 84 3 3 chr4 40459321 40459629 -161868718 + AluSp SINE Alu 1 308 -5 784 158 0 8 chr4 40459845 40459978 -161868369 - FLAM_C SINE Alu 0 133 2 369 62 0 0 chr4 40460955 40461003 -161867344 + (TG)n Simple_repeat Simple_repeat 1 48 0 1434 169 106 31 chr4 40461033 40461353 -161866994 - MER2 DNA MER2_type 0 344 1 2383 97 0 0 chr4 40461904 40462204 -161866143 + AluSg SINE Alu 1 300 -10 22 35 0 0 chr4 40462703 40462732 -161865615 + AT_rich Low_complexity Low_complexity 1 29 0 31 0 0 0 chr4 40462821 40462852 -161865495 + AT_rich Low_complexity Low_complexity 1 31 0 362 314 166 14 chr4 40463074 40463297 -161865050 - L2 LINE L2 -468 2846 2590 748 247 53 0 chr4 40463301 40463491 -161864856 - MIR SINE MIR -49 213 14 271 171 70 4 chr4 40463566 40463753 -161864594 + AluJo SINE Alu 27 302 0 361 248 60 53 chr4 40463753 40463886 -161864461 - L2 LINE L2 -1295 2019 1886 392 262 130 50 chr4 40464338 40464631 -161863716 + L1MC4a LINE L1 5152 5471 -760 341 262 105 37 chr4 40464733 40464924 -161863423 + L1MC4a LINE L1 5711 5914 -1894 30 45 0 0 chr4 40466258 40466302 -161862045 + AT_rich Low_complexity Low_complexity 1 44 0 668 354 101 51 chr4 40467418 40467908 -161860439 + L2 LINE L2 1638 2102 -1212 7518 134 31 7 chr4 40467908 40468130 -161860217 - HSMAR2 DNA Mariner -1 1301 1086 180 0 0 0 chr4 40468130 40468150 -161860197 + (TTG)n Simple_repeat Simple_repeat 3 22 0 7518 134 31 7 chr4 40468150 40469198 -161859149 - HSMAR2 DNA Mariner -216 1086 1 668 354 101 51 chr4 40469198 40469982 -161858365 + L2 LINE L2 2102 2976 -338 2292 112 0 0 chr4 40469989 40470294 -161858053 - AluSc SINE Alu -4 305 1 2120 116 14 0 chr4 40470431 40470725 -161857622 + AluSx SINE Alu 5 302 -10 290 341 40 16 chr4 40470826 40470952 -161857395 + L2 LINE L2 3144 3272 0 230 288 14 0 chr4 40470967 40471040 -161857307 - L1ME LINE L1 -456 5665 5592 3416 174 7 12 chr4 40471399 40472126 -161856221 - L1P LINE L1 -859 5287 4557 252 0 0 0 chr4 40472126 40472154 -161856193 + (TG)n Simple_repeat Simple_repeat 1 28 0 3416 174 7 12 chr4 40472154 40472786 -161855561 - L1P LINE L1 -1589 4557 3767 3025 121 4 0 chr4 40472790 40473252 -161855095 + L1PA13 LINE L1 5324 5787 -376 1740 103 117 0 chr4 40473253 40473526 -161854821 + L1PA13 LINE L1 5851 6155 -8 184 309 0 0 chr4 40474071 40474113 -161854234 + MIR SINE MIR 42 83 -125 255 350 196 7 chr4 40474211 40474354 -161853993 + MER5B DNA MER1_type 8 177 -1 291 145 13 40 chr4 40474895 40474971 -161853376 + GA-rich Low_complexity Low_complexity 3 76 0 1240 98 12 0 chr4 40475741 40475905 -161852442 - AluSp SINE Alu -11 302 137 323 102 0 0 chr4 40475905 40475954 -161852393 + MADE1 DNA Mariner 32 80 0 330 187 20 0 chr4 40475966 40476116 -161852231 + (TA)n Simple_repeat Simple_repeat 1 153 0 2291 93 0 0 chr4 40476116 40476406 -161851941 - AluSg SINE Alu -20 290 1 453 36 0 0 chr4 40476897 40476952 -161851395 + (TA)n Simple_repeat Simple_repeat 1 55 0 270 194 52 26 chr4 40477132 40477287 -161851060 + (TA)n Simple_repeat Simple_repeat 1 159 0 222 165 24 12 chr4 40477298 40477383 -161850964 + (TATAA)n Simple_repeat Simple_repeat 1 86 0 216 195 34 34 chr4 40477433 40477551 -161850796 + (TA)n Simple_repeat Simple_repeat 1 118 0 1960 130 18 0 chr4 40477646 40477923 -161850424 + AluSq SINE Alu 1 282 -31 207 0 0 0 chr4 40477926 40477949 -161850398 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 232 132 0 0 chr4 40479335 40479373 -161848974 + LTR50 LTR ERVL 1 38 -757 476 223 284 0 chr4 40479503 40479700 -161848647 + LTR50 LTR ERVL 215 467 -328 249 237 26 0 chr4 40479787 40479863 -161848484 + LTR33A LTR ERVL 421 498 -25 24 0 0 0 chr4 40479961 40479985 -161848362 + AT_rich Low_complexity Low_complexity 1 24 0 537 232 0 0 chr4 40480398 40480497 -161847850 + FLAM_A SINE Alu 1 99 -43 2205 140 14 14 chr4 40480549 40480913 -161847434 - THE1B LTR MaLR 0 364 1 517 296 40 13 chr4 40480989 40481141 -161847206 + LTR52 LTR ERVL 1 156 -265 1855 50 0 5 chr4 40481167 40481387 -161846960 - AluY SINE Alu -18 293 75 1047 190 15 0 chr4 40481481 40481676 -161846671 + LTR52 LTR ERVL 207 404 -17 1950 110 0 0 chr4 40481676 40481931 -161846416 + AluSq SINE Alu 36 290 -23 2355 249 57 16 chr4 40481935 40482562 -161845785 + LTR52-int LTR ERVL 20 672 -2884 2916 230 31 17 chr4 40482766 40483394 -161844953 + LTR52-int LTR ERVL 1117 1760 -3925 2209 194 24 5 chr4 40483394 40483812 -161844535 + MSTB LTR MaLR 1 426 0 2916 230 31 17 chr4 40483812 40483960 -161844387 + LTR52-int LTR ERVL 1760 1904 -3781 739 277 12 0 chr4 40483953 40484119 -161844228 + LTR52-int LTR ERVL 2544 2711 -845 * 520 218 73 8 chr4 40484213 40484337 -161844010 + LTR52-int LTR ERVL 3412 3543 -13 1195 256 50 30 chr4 40484368 40484766 -161843581 + LTR52 LTR ERVL 1 406 -15 3852 187 33 22 chr4 40484807 40485159 -161843188 - L1MB2 LINE L1 -8 6163 5816 266 71 0 24 chr4 40485159 40485201 -161843146 + (TA)n Simple_repeat Simple_repeat 2 42 0 2112 106 11 0 chr4 40485201 40485483 -161842864 - AluSx SINE Alu -27 285 1 3852 187 33 22 chr4 40485483 40485956 -161842391 - L1MB2 LINE L1 -354 5817 5328 3246 166 67 2 chr4 40486217 40486827 -161841520 + MER39B LTR ERV1 4 653 0 3139 149 20 13 chr4 40487187 40487960 -161840387 + L1PB4 LINE L1 5008 5791 -365 441 54 0 0 chr4 40487960 40488016 -161840331 + (TA)n Simple_repeat Simple_repeat 1 56 0 243 0 0 0 chr4 40488016 40488043 -161840304 + (CA)n Simple_repeat Simple_repeat 1 27 0 1996 182 11 5 chr4 40488043 40488412 -161839935 + L1PB4 LINE L1 5783 6153 -3 597 144 59 105 chr4 40488594 40488747 -161839600 + LTR23 LTR ERV1 6 151 -286 1472 119 11 60 chr4 40488821 40489106 -161839241 + LTR23 LTR ERV1 167 437 0 190 347 41 41 chr4 40489117 40489215 -161839132 - MIR SINE MIR -114 148 51 1346 175 4 4 chr4 40489471 40489705 -161838642 + MER74A LTR ERVL 325 558 0 336 323 6 24 chr4 40489709 40489873 -161838474 + MIR SINE MIR 94 254 -8 28 48 0 0 chr4 40490321 40490363 -161837984 + AT_rich Low_complexity Low_complexity 1 42 0 406 335 80 0 chr4 40491209 40491385 -161836962 - MIR SINE MIR -6 256 67 3446 156 61 45 chr4 40492963 40493655 -161834692 + L1MC1 LINE L1 5373 6075 -258 771 197 7 33 chr4 40493656 40493808 -161834539 + MLT1A1 LTR MaLR 1 148 -217 849 121 0 0 chr4 40493812 40493936 -161834411 + AluSp/q SINE Alu 182 305 -8 1302 153 43 0 chr4 40493942 40494151 -161834196 + MLT1A1 LTR MaLR 148 365 0 789 246 11 6 chr4 40494151 40494334 -161834013 + L1MC1 LINE L1 6074 6257 -76 1560 75 30 5 chr4 40494344 40494543 -161833804 - AluSq SINE Alu -109 204 1 1778 110 4 18 chr4 40494808 40495080 -161833267 - L1PA10 LINE L1 0 6168 5901 2820 53 68 35 chr4 40495080 40495123 -161833224 + L1PA10 LINE L1 5451 5491 -677 2038 127 7 0 chr4 40495123 40495414 -161832933 + AluSx SINE Alu 3 295 -17 2820 53 68 35 chr4 40495414 40495766 -161832581 + L1PA10 LINE L1 5491 5859 -309 282 227 43 43 chr4 40495766 40495907 -161832440 - MER113 DNA MER1_type? -349 172 32 217 313 10 10 chr4 40495933 40496032 -161832315 - L2 LINE L2 -1052 2262 2164 188 191 0 24 chr4 40496378 40496420 -161831927 - L2 LINE L2 -6 3307 3267 584 215 6 0 chr4 40497135 40497298 -161831049 + (TAGA)n Simple_repeat Simple_repeat 2 165 0 192 290 29 0 chr4 40497394 40497463 -161830884 + MIR SINE MIR 79 149 -113 332 313 124 39 chr4 40497505 40497738 -161830609 - MIR SINE MIR 0 262 10 438 139 14 0 chr4 40498437 40498509 -161829838 + MADE1 DNA Mariner 8 80 0 237 132 0 0 chr4 40498745 40498783 -161829564 + (TATG)n Simple_repeat Simple_repeat 3 40 0 2223 94 6 38 chr4 40498961 40499279 -161829068 - AluSp SINE Alu -5 308 1 360 273 68 37 chr4 40500762 40500923 -161827424 - MIR SINE MIR -89 173 8 1650 172 48 12 chr4 40501429 40501761 -161826586 - MER7A DNA MER2_type -3 343 2 271 373 98 28 chr4 40501764 40502019 -161826328 + L2 LINE L2 2999 3271 -1 640 280 95 13 chr4 40502734 40502969 -161825378 - MIR SINE MIR 0 262 5 2418 77 3 7 chr4 40503114 40503424 -161824923 + AluY SINE Alu 3 311 0 182 154 0 0 chr4 40504158 40504184 -161824163 - L3b LINE CR1 -264 1319 1294 315 290 122 19 chr4 40505419 40505526 -161822821 + MIR SINE MIR 6 123 -139 21 71 0 0 chr4 40506302 40506344 -161822003 + AT_rich Low_complexity Low_complexity 1 42 0 2282 108 0 3 chr4 40506634 40506940 -161821407 + AluSx SINE Alu 1 305 -7 622 176 16 66 chr4 40507247 40507429 -161820918 + MER53 DNA DNA 1 173 -16 992 87 0 16 chr4 40508133 40508259 -161820088 - AluSq/x SINE Alu -189 124 1 27 0 0 0 chr4 40508260 40508287 -161820060 + AT_rich Low_complexity Low_complexity 1 27 0 210 254 51 0 chr4 40510394 40510453 -161817894 + L3 LINE CR1 1516 1577 0 478 143 0 11 chr4 40511015 40511106 -161817241 - L1MA3 LINE L1 0 6305 6216 299 268 37 0 chr4 40511121 40511203 -161817144 - MIR SINE MIR -108 154 70 2279 80 23 7 chr4 40511456 40511758 -161816589 - AluY SINE Alu -4 307 1 291 28 0 0 chr4 40511949 40511985 -161816362 + (TG)n Simple_repeat Simple_repeat 1 36 0 1119 216 79 16 chr4 40512133 40512438 -161815909 + MER2 DNA MER2_type 22 345 0 422 314 128 39 chr4 40512579 40512916 -161815431 - L1MC/D LINE L1 -2138 5670 5304 460 261 188 0 chr4 40513062 40513296 -161815051 - L1ME2 LINE L1 -18 6146 5869 4576 234 81 9 chr4 40513303 40515245 -161813102 - L1ME2 LINE L1 -391 5775 3690 316 225 20 139 chr4 40515254 40515289 -161813058 + LTR41 LTR ERVL 549 587 -186 324 48 0 0 chr4 40515289 40515331 -161813016 + (TG)n Simple_repeat Simple_repeat 2 43 0 316 225 20 139 chr4 40515331 40515446 -161812901 + LTR41 LTR ERVL 587 681 -92 673 246 11 6 chr4 40515687 40515862 -161812485 - MER58A DNA MER1_type -12 212 37 2349 84 3 0 chr4 40516182 40516480 -161811867 - AluSp SINE Alu -14 299 1 505 290 120 0 chr4 40516505 40516688 -161811659 + MIR SINE MIR 7 211 -51 22 0 0 0 chr4 40516768 40516790 -161811557 + AT_rich Low_complexity Low_complexity 1 22 0 310 193 53 70 chr4 40517216 40517229 -161811118 - L1MC4 LINE L1 -124 7918 7906 531 0 0 0 chr4 40517229 40517288 -161811059 + (CTATT)n Simple_repeat Simple_repeat 1 59 0 310 193 53 70 chr4 40517288 40517388 -161810959 - L1MC4 LINE L1 -136 7906 7807 2274 64 0 3 chr4 40517389 40517707 -161810640 + AluY SINE Alu 1 317 0 621 167 54 40 chr4 40517715 40517896 -161810451 - MER31B LTR ERV1 -250 235 7 2294 106 0 3 chr4 40517962 40518273 -161810074 + AluSg SINE Alu 1 310 0 1149 199 171 50 chr4 40519571 40519952 -161808395 - MER31B LTR ERV1 -39 427 1 2468 61 3 0 chr4 40520783 40521079 -161807268 + AluY SINE Alu 1 297 -14 2419 80 0 0 chr4 40521633 40521932 -161806415 + AluY SINE Alu 1 299 -12 1846 192 14 11 chr4 40523796 40524155 -161804192 + MLT1A1 LTR MaLR 4 363 -2 770 227 23 0 chr4 40525416 40525592 -161802755 + MER5A DNA MER1_type 7 186 -3 181 316 0 51 chr4 40525643 40525722 -161802625 + L2 LINE L2 3198 3272 0 238 295 36 86 chr4 40525761 40525900 -161802447 - MER5A DNA MER1_type -2 187 56 312 48 0 0 chr4 40526227 40526269 -161802078 + (TTTG)n Simple_repeat Simple_repeat 1 42 0 1738 139 15 7 chr4 40526280 40526554 -161801793 - AluJb SINE Alu -36 276 1 250 200 148 17 chr4 40529021 40529136 -161799211 - MER113 DNA MER1_type? -349 172 43 3498 200 24 48 chr4 40529475 40529655 -161798692 + L1MB8 LINE L1 5145 5328 -850 2144 138 0 0 chr4 40529655 40529959 -161798388 + AluSx SINE Alu 3 306 -6 3498 200 24 48 chr4 40529959 40530822 -161797525 + L1MB8 LINE L1 5328 6178 0 6152 129 14 8 chr4 40531061 40532553 -161795794 + L1PB1 LINE L1 4667 6170 0 234 377 74 0 chr4 40532689 40532811 -161795536 + L2 LINE L2 3137 3267 -5 2153 129 126 0 chr4 40533768 40534148 -161794199 + MSTA LTR MaLR 1 428 0 3263 177 32 16 chr4 40534177 40534856 -161793491 - L1MB5 LINE L1 -9 6165 5476 409 121 0 30 chr4 40534888 40534954 -161793393 - L1PA8A LINE L1 -6 6125 6062 1591 65 0 0 chr4 40534954 40535169 -161793178 + L1PA8A LINE L1 5845 6059 -72 755 159 88 6 chr4 40535166 40535348 -161792999 - L1MB5 LINE L1 -709 5471 5275 * 7087 198 26 9 chr4 40535345 40537029 -161791318 + L1MB5 LINE L1 3535 5246 -900 4400 144 38 28 chr4 40537005 40537907 -161790440 + L1PA16 LINE L1 5256 6166 0 * 333 0 0 0 chr4 40538628 40538665 -161789682 + (TG)n Simple_repeat Simple_repeat 2 38 0 23 33 0 0 chr4 40538836 40538866 -161789481 + AT_rich Low_complexity Low_complexity 1 30 0 1122 247 20 102 chr4 40540510 40541008 -161787339 + LTR16A1 LTR ERVL 1 457 0 898 352 21 25 chr4 40541009 40541540 -161786807 + HERV16 LTR ERVL 2 530 -4466 497 324 79 33 chr4 40541711 40542286 -161786061 + HERV16 LTR ERVL 3351 3666 -1330 359 203 308 0 chr4 40542648 40542791 -161785556 + MIR SINE MIR 76 262 0 2109 131 9 19 chr4 40543128 40543586 -161784761 + LTR26B LTR ERV1 1 531 0 22 0 0 0 chr4 40543745 40543767 -161784580 + AT_rich Low_complexity Low_complexity 1 22 0 1178 200 90 60 chr4 40543848 40544314 -161784033 + LTR24B LTR ERV1 90 569 -7 391 237 52 21 chr4 40544652 40544749 -161783598 - L2 LINE L2 -8 3305 3206 548 122 0 56 chr4 40544791 40544898 -161783449 - L1PB4 LINE L1 -1 6155 6055 227 315 87 39 chr4 40544908 40545035 -161783312 - MIR3 SINE MIR -21 187 55 2188 69 8 2 chr4 40545575 40545932 -161782415 + LTR7 LTR ERV1 1 448 -2 18222 90 52 15 chr4 40545934 40548815 -161779532 + HERVH LTR ERV1 1 2987 -4726 805 131 41 0 chr4 40548809 40548954 -161779393 + HERVH LTR ERV1 3140 3290 -4423 * 3179 110 6 6 chr4 40548944 40549446 -161778901 + HERVH LTR ERV1 3492 3993 -3720 3998 145 6 1 chr4 40549448 40550104 -161778243 + HERVH LTR ERV1 4488 5146 -2567 1253 134 23 9 chr4 40550108 40550325 -161778022 + HERVH LTR ERV1 5600 5819 -1894 2264 93 48 13 chr4 40550325 40550702 -161777645 + HERVH LTR ERV1 7324 7713 0 2603 74 122 10 chr4 40550702 40551105 -161777242 + LTR7 LTR ERV1 1 448 -2 198 0 0 0 chr4 40552225 40552247 -161776100 + (TTA)n Simple_repeat Simple_repeat 3 24 0 15589 27 1 0 chr4 40552247 40554848 -161773499 - L1PA3 LINE L1 -18 6137 3535 565 299 53 44 chr4 40555216 40555557 -161772790 - L2 LINE L2 -15 3298 2955 32850 102 15 56 chr4 40556003 40562650 -161765697 + L1PA7 LINE L1 2 6154 0 452 221 11 0 chr4 40562884 40562979 -161765368 + L2 LINE L2 3176 3271 -1 419 241 18 112 chr4 40563250 40563420 -161764927 + MIR SINE MIR 90 243 -19 896 269 44 8 chr4 40563453 40563702 -161764645 + MIR SINE MIR 4 261 -1 1106 166 11 5 chr4 40563856 40564043 -161764304 - MER5A DNA MER1_type -1 188 1 225 170 19 19 chr4 40564173 40564226 -161764121 - L2 LINE L2 0 3313 3261 573 217 49 126 chr4 40564258 40564323 -161764024 + MIR SINE MIR 12 80 -182 2210 171 28 5 chr4 40564323 40564710 -161763637 + MSTD LTR MaLR 1 396 0 573 217 49 126 chr4 40564710 40564915 -161763432 + MIR SINE MIR 80 259 -3 1286 196 44 86 chr4 40565400 40565445 -161762902 + MER7A DNA MER2_type 2 47 -2991 1507 183 0 0 chr4 40565445 40565702 -161762645 + AluJb SINE Alu 41 297 -15 1286 196 44 86 chr4 40565702 40566018 -161762329 + MER7A DNA MER2_type 47 346 0 682 216 114 0 chr4 40566021 40566188 -161762159 - MIR SINE MIR -2 260 75 2385 89 0 6 chr4 40566825 40567139 -161761208 + AluSx SINE Alu 1 312 0 901 190 103 10 chr4 40567651 40567846 -161760501 - AluJo SINE Alu -16 296 84 409 276 102 53 chr4 40568142 40568388 -161759959 - MIR SINE MIR -2 260 3 1875 156 0 28 chr4 40568823 40569144 -161759203 + AluJo SINE Alu 1 312 0 2163 107 10 7 chr4 40570586 40570884 -161757463 - AluSx SINE Alu -13 299 1 1882 148 0 19 chr4 40570996 40571314 -161757033 - AluJo SINE Alu 0 312 1 2190 109 13 19 chr4 40571792 40572104 -161756243 - AluSx SINE Alu 0 312 3 2383 92 3 13 chr4 40572200 40572516 -161755831 - AluSp SINE Alu 0 313 1 1654 166 4 11 chr4 40573782 40574060 -161754287 - AluJo SINE Alu -36 276 1 1527 121 128 8 chr4 40574264 40574537 -161753810 - AluSg1 SINE Alu 0 303 1 205 302 116 12 chr4 40575460 40575546 -161752801 + L2 LINE L2 3177 3271 -1 337 129 29 0 chr4 40576216 40576286 -161752061 - L1MB4 LINE L1 0 6180 6109 1673 174 19 29 chr4 40576436 40576746 -161751601 - AluJo SINE Alu -5 307 1 180 280 0 20 chr4 40577380 40577430 -161750917 - MIR SINE MIR 0 262 214 233 347 0 31 chr4 40577565 40577663 -161750684 - MIR SINE MIR -160 102 8 671 213 124 40 chr4 40577876 40578078 -161750269 - MIR SINE MIR 0 262 44 198 303 114 48 chr4 40578181 40578409 -161749938 - L2 LINE L2 -616 2698 2456 194 188 83 21 chr4 40578502 40578550 -161749797 - L2 LINE L2 -1 3312 3262 237 336 55 18 chr4 40578827 40578937 -161749410 + MIR SINE MIR 39 152 -56 244 214 71 0 chr4 40579386 40579456 -161748891 - MIR3 SINE MIR -14 194 120 1809 183 0 7 chr4 40579577 40579877 -161748470 - AluJb SINE Alu -14 298 1 390 306 130 58 chr4 40582149 40582564 -161745783 - L3b LINE CR1 0 1583 1139 212 167 0 0 chr4 40582696 40582738 -161745609 + A-rich Low_complexity Low_complexity 1 42 0 347 329 122 45 chr4 40583026 40583272 -161745075 - L1 LINE L1 -2366 3780 3516 1330 245 55 46 chr4 40583588 40584381 -161743966 - L1ME3 LINE L1 -235 5935 5135 427 253 204 6 chr4 40584447 40584609 -161743738 + L2 LINE L2 3115 3308 -5 2481 209 86 49 chr4 40586502 40586994 -161741353 - L1ME3A LINE L1 -12 6158 5625 369 0 0 0 chr4 40586994 40587035 -161741312 + (CA)n Simple_repeat Simple_repeat 2 42 0 2481 209 86 49 chr4 40587035 40587336 -161741011 - L1ME3A LINE L1 -545 5625 5336 311 304 122 5 chr4 40587527 40587741 -161740606 - L1ME3A LINE L1 -999 5147 4909 21 57 0 0 chr4 40587792 40587827 -161740520 + AT_rich Low_complexity Low_complexity 1 35 0 2467 72 13 0 chr4 40588180 40588484 -161739863 - AluY SINE Alu -3 308 1 989 132 11 58 chr4 40589325 40589514 -161738833 - MER20 DNA MER1_type -38 181 2 232 258 10 20 chr4 40590128 40590215 -161738132 + MIR SINE MIR 53 138 -70 3761 199 28 26 chr4 40590530 40591414 -161736933 - L1MB8 LINE L1 0 6178 5293 430 325 25 39 chr4 40592223 40592426 -161735921 + L2 LINE L2 2693 2892 -422 2147 135 0 0 chr4 40593060 40593372 -161734975 + AluSx SINE Alu 1 312 0 255 31 0 0 chr4 40593613 40593645 -161734702 + (TA)n Simple_repeat Simple_repeat 1 32 0 2157 108 0 0 chr4 40593646 40593934 -161734413 - AluSc SINE Alu -21 288 1 305 138 0 17 chr4 40595046 40595104 -161733243 + (GGAA)n Simple_repeat Simple_repeat 2 58 0 543 271 14 0 chr4 40596551 40596691 -161731656 - MER103 DNA DNA -22 144 3 921 245 34 73 chr4 40597505 40597918 -161730429 - MLT2C1 LTR ERVL 0 397 1 279 0 0 0 chr4 40598006 40598037 -161730310 + (CA)n Simple_repeat Simple_repeat 2 32 0 255 327 50 20 chr4 40598332 40598433 -161729914 - MLT1J LTR MaLR -215 296 193 207 319 0 14 chr4 40598613 40598685 -161729662 + GA-rich Low_complexity Low_complexity 1 71 0 40 0 0 0 chr4 40599457 40599497 -161728850 + AT_rich Low_complexity Low_complexity 1 40 0 2204 78 36 0 chr4 40599801 40600082 -161728265 - AluSc SINE Alu -18 291 1 1293 202 50 29 chr4 40601107 40601324 -161727023 + MLT1B LTR MaLR 3 170 -220 2116 74 0 7 chr4 40601324 40601608 -161726739 + L1PA6 LINE L1 5873 6154 0 1293 202 50 29 chr4 40601608 40601834 -161726513 + MLT1B LTR MaLR 170 390 0 1998 138 68 11 chr4 40603458 40603813 -161724534 + THE1C LTR MaLR 1 375 0 227 350 86 0 chr4 40604352 40604469 -161723878 - L2 LINE L2 -5 3308 3182 3130 96 5 7 chr4 40604999 40605437 -161722910 + L1PA12 LINE L1 5732 6168 0 274 265 81 0 chr4 40605451 40605537 -161722810 - MIR3 SINE MIR -40 168 75 2136 137 0 0 chr4 40605780 40606087 -161722260 + AluSx SINE Alu 1 307 -5 363 136 0 0 chr4 40606471 40606530 -161721817 + (TG)n Simple_repeat Simple_repeat 2 60 0 306 203 74 41 chr4 40606648 40606756 -161721591 - MIR SINE MIR -78 130 19 223 154 0 0 chr4 40607492 40607531 -161720816 + (CACCC)n Simple_repeat Simple_repeat 4 42 0 1877 127 3 3 chr4 40607737 40608055 -161720292 - AluSx SINE Alu 0 318 1 311 229 29 0 chr4 40608416 40608486 -161719861 - L1ME4a LINE L1 -3 6118 6047 326 229 16 3 chr4 40608612 40608684 -161719663 + MIR SINE MIR 18 89 -119 1737 149 10 20 chr4 40608690 40609015 -161719332 - AluSx SINE Alu 0 312 5 195 359 0 26 chr4 40609079 40609157 -161719190 + L2 LINE L2 3238 3313 0 1625 173 10 10 chr4 40609202 40609508 -161718839 - AluJo SINE Alu -6 306 1 636 231 59 35 chr4 40609508 40609677 -161718670 + MIR SINE MIR 86 258 -4 187 313 45 0 chr4 40610040 40610107 -161718240 - MIR SINE MIR -74 188 119 717 151 18 90 chr4 40610619 40610785 -161717562 - MER5A DNA MER1_type 0 189 36 2154 95 20 0 chr4 40611176 40611471 -161716876 + AluSp SINE Alu 1 301 -12 366 262 110 28 chr4 40611945 40612090 -161716257 + MIR3 SINE MIR 31 187 -21 231 172 0 35 chr4 40612496 40612554 -161715793 + (CGGGG)n Simple_repeat Simple_repeat 4 59 0 556 131 10 0 chr4 40614030 40614129 -161714218 - Tigger2 DNA MER2_type -2617 101 2 279 358 204 11 chr4 40614406 40614582 -161713765 + MIR SINE MIR 53 262 0 925 297 15 4 chr4 40614592 40614851 -161713496 + MIR SINE MIR 1 262 0 281 329 73 0 chr4 40614882 40615019 -161713328 - MIR SINE MIR -6 256 110 285 303 50 54 chr4 40615384 40615701 -161712646 - L2 LINE L2 -34 3279 2964 2244 110 0 3 chr4 40616211 40616520 -161711827 - AluSg SINE Alu -2 308 1 1795 257 46 31 chr4 40616811 40617351 -161710996 - MER77 LTR ERV1 -4 601 54 999 139 39 0 chr4 40617384 40617564 -161710783 - L1MA7 LINE L1 0 6291 6105 1106 164 19 5 chr4 40617564 40617773 -161710574 + L1 LINE L1 2258 2469 -3677 210 71 0 0 chr4 40617982 40618010 -161710337 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1813 165 7 7 chr4 40618032 40618335 -161710012 + AluSx SINE Alu 1 303 -9 207 350 43 17 chr4 40618429 40618546 -161709801 - L2 LINE L2 -518 2796 2677 1080 274 53 35 chr4 40619385 40619783 -161708564 - MLT1D LTR MaLR -100 405 1 180 111 0 0 chr4 40619905 40619932 -161708415 + (TTCA)n Simple_repeat Simple_repeat 2 28 0 200 247 123 0 chr4 40620837 40620918 -161707429 + MIR3 SINE MIR 107 197 -11 1690 266 89 8 chr4 40621724 40622238 -161706109 - MLT1G LTR MaLR 0 590 35 599 158 8 0 chr4 40623167 40623294 -161705053 + (CA)n Simple_repeat Simple_repeat 1 128 0 305 336 22 0 chr4 40624608 40624745 -161703602 - MIR SINE MIR -109 153 14 200 250 0 0 chr4 40626366 40626410 -161701937 - MIR SINE MIR -58 150 107 2277 61 10 3 chr4 40626544 40626841 -161701506 + AluSp SINE Alu 1 299 -14 1723 158 3 37 chr4 40627893 40628191 -161700156 + AluJb SINE Alu 5 292 -20 325 265 88 7 chr4 40628233 40628369 -161699978 - L1ME4a LINE L1 -52 6069 5923 387 60 0 0 chr4 40629919 40629969 -161698378 + (CATA)n Simple_repeat Simple_repeat 2 51 0 367 256 11 17 chr4 40630163 40630343 -161698004 + (TG)n Simple_repeat Simple_repeat 2 180 0 277 267 11 17 chr4 40630362 40630542 -161697805 + (TG)n Simple_repeat Simple_repeat 2 180 0 310 257 11 17 chr4 40630565 40630744 -161697603 + (TG)n Simple_repeat Simple_repeat 2 179 0 304 298 62 65 chr4 40631202 40631571 -161696776 - MLT1I LTR MaLR -4 405 38 2085 113 0 3 chr4 40631680 40631982 -161696365 + AluSx SINE Alu 1 301 -11 261 240 47 93 chr4 40632683 40632812 -161695535 - MLT1J LTR MaLR 0 511 389 264 161 23 0 chr4 40632959 40633016 -161695331 - MLT1J1 LTR MaLR -324 122 71 3594 53 0 15 chr4 40634173 40634628 -161693719 - LTR7 LTR ERV1 -2 448 1 2399 99 39 13 chr4 40634628 40635010 -161693337 - HERVH LTR ERV1 0 7713 7322 1298 118 43 0 chr4 40635008 40635219 -161693128 - HERVH LTR ERV1 -1894 5819 5600 * 4466 130 0 1 chr4 40635220 40635883 -161692464 - HERVH LTR ERV1 -2564 5149 4488 3529 83 0 6 chr4 40635885 40636390 -161691957 - HERVH LTR ERV1 -3720 3993 3492 946 133 7 0 chr4 40636380 40636530 -161691817 - HERVH LTR ERV1 -4423 3290 3140 * 20035 93 13 18 chr4 40636524 40639505 -161688842 - HERVH LTR ERV1 -4726 2987 22 3260 80 23 7 chr4 40639542 40639980 -161688367 - LTR7 LTR ERV1 -4 446 2 617 298 54 10 chr4 40640019 40640314 -161688033 - L1MC4a LINE L1 -1942 5866 5559 293 271 104 62 chr4 40640699 40640782 -161687565 + L2 LINE L2 3143 3237 -76 2141 79 0 4 chr4 40640782 40641093 -161687254 + AluSx SINE Alu 7 316 0 293 271 104 62 chr4 40641093 40641152 -161687195 + L2 LINE L2 3237 3292 -21 314 319 101 29 chr4 40641384 40641522 -161686825 - L1MC4a LINE L1 -2392 5416 5269 831 173 20 7 chr4 40641651 40641801 -161686546 - FRAM SINE Alu -5 171 20 405 0 0 0 chr4 40644991 40645036 -161683311 + (CA)n Simple_repeat Simple_repeat 2 46 0 246 284 60 26 chr4 40650049 40650165 -161678182 - L1ME4a LINE L1 -28 6093 5974 1837 105 8 4 chr4 40650479 40650737 -161677610 - AluSc SINE Alu -50 259 1 741 227 96 23 chr4 40652554 40652774 -161675573 - L1MC5 LINE L1 -1114 6847 6612 1759 161 0 26 chr4 40653054 40653358 -161674989 - AluJb SINE Alu -16 296 1 655 322 103 26 chr4 40653504 40653929 -161674418 + L2 LINE L2 759 1216 -2098 736 219 0 0 chr4 40653950 40654078 -161674269 - FLAM_A SINE Alu -2 131 4 193 392 66 6 chr4 40654099 40654280 -161674067 + L2 LINE L2 1736 1927 -1387 834 197 0 0 chr4 40654757 40654904 -161673443 - FAM SINE Alu -37 148 2 296 296 0 6 chr4 40655749 40655921 -161672426 + (TCCA)n Simple_repeat Simple_repeat 2 172 0 206 289 0 0 chr4 40655937 40655989 -161672358 + (TCCA)n Simple_repeat Simple_repeat 3 54 0 264 77 0 0 chr4 40656024 40656063 -161672284 + (TCCA)n Simple_repeat Simple_repeat 1 39 0 1715 108 0 21 chr4 40657638 40657878 -161670469 - AluSg/x SINE Alu -7 303 69 436 335 56 37 chr4 40658591 40658806 -161669541 + L2 LINE L2 2569 2787 -527 21 0 0 0 chr4 40659742 40659763 -161668584 + AT_rich Low_complexity Low_complexity 1 21 0 262 241 160 0 chr4 40659765 40659885 -161668462 - MIR SINE MIR -16 246 100 313 131 47 0 chr4 40660752 40660859 -161667488 + (TA)n Simple_repeat Simple_repeat 1 112 0 320 200 14 14 chr4 40660861 40660931 -161667416 - L1MCa LINE L1 -4362 2064 1995 658 101 46 0 chr4 40660935 40661245 -161667102 + (TA)n Simple_repeat Simple_repeat 1 324 0 284 48 24 0 chr4 40661258 40661300 -161667047 + (TA)n Simple_repeat Simple_repeat 2 44 0 375 259 167 19 chr4 40662057 40662219 -161666128 - MIR SINE MIR 0 262 77 183 269 19 0 chr4 40662447 40662499 -161665848 + MIR SINE MIR 114 166 -96 1555 235 42 22 chr4 40662500 40662951 -161665396 - MLT1J LTR MaLR -28 483 24 2240 90 3 10 chr4 40663202 40663502 -161664845 - AluSg SINE Alu -12 298 1 318 292 180 25 chr4 40663761 40663922 -161664425 + MIR SINE MIR 63 248 -14 1611 187 103 29 chr4 40664048 40664466 -161663881 + L1ME2 LINE L1 5706 6154 -10 816 98 0 8 chr4 40664471 40664604 -161663743 + L1MB3 LINE L1 5318 5449 -734 256 167 0 19 chr4 40664604 40664658 -161663689 + MSTB1 LTR MaLR 1 53 -379 240 62 0 0 chr4 40664682 40664714 -161663633 + MSTB1 LTR MaLR 22 53 -373 239 86 0 0 chr4 40664707 40664742 -161663605 + MSTB LTR MaLR 19 53 -379 * 273 54 0 0 chr4 40664733 40664770 -161663577 + MSTB LTR MaLR 17 53 -373 239 86 0 0 chr4 40664791 40664826 -161663521 + MSTB LTR MaLR 19 53 -379 * 2061 163 25 11 chr4 40664811 40665211 -161663136 + MSTB1 LTR MaLR 10 392 -40 1286 134 104 5 chr4 40665211 40665547 -161662800 + LTR47A LTR ERVL 1 452 0 4255 144 26 1 chr4 40665575 40666310 -161662037 + L1MB3 LINE L1 5427 6179 -4 286 278 74 37 chr4 40666667 40666775 -161661572 - L2 LINE L2 0 3313 3202 385 288 141 61 chr4 40667732 40668505 -161659842 + L2 LINE L2 2453 3270 -2 651 297 59 41 chr4 40668535 40668976 -161659371 + LTR16B LTR ERVL 1 449 -15 1503 174 26 40 chr4 40669260 40669564 -161658783 + AluJo SINE Alu 5 304 -8 398 281 6 31 chr4 40669591 40669751 -161658596 - MER112 DNA MER1_type -99 161 6 228 239 303 0 chr4 40670541 40670650 -161657697 + MIR3 SINE MIR 23 164 -44 * 338 246 27 27 chr4 40670647 40670757 -161657590 - MIR3 SINE MIR -2 206 97 415 314 64 70 chr4 40671106 40671562 -161656785 - MLT1K LTR MaLR -3 585 133 251 132 0 0 chr4 40671958 40671996 -161656351 + MLT1L LTR MaLR 350 387 -228 237 242 61 10 chr4 40672060 40672159 -161656188 + MLT1L LTR MaLR 512 615 0 392 191 56 32 chr4 40672368 40672494 -161655853 - L1 LINE L1 -866 5280 5152 1937 138 3 14 chr4 40673249 40673540 -161654807 + AluSx SINE Alu 1 288 -24 1757 185 42 44 chr4 40673645 40674201 -161654146 - MLT2A2 LTR ERVL 0 554 1 1435 159 27 0 chr4 40676012 40676269 -161652078 + L1PA16 LINE L1 5894 6157 -9 221 100 80 0 chr4 40676269 40676319 -161652028 + (TA)n Simple_repeat Simple_repeat 1 54 0 22 35 0 0 chr4 40677815 40677844 -161650503 + AT_rich Low_complexity Low_complexity 1 29 0 753 273 16 5 chr4 40678641 40678835 -161649512 - MIR SINE MIR -21 241 46 250 178 0 67 chr4 40679261 40679396 -161648951 + (TTA)n Simple_repeat Simple_repeat 2 127 0 21 0 0 0 chr4 40679690 40679711 -161648636 + AT_rich Low_complexity Low_complexity 1 21 0 2021 147 17 0 chr4 40680022 40680321 -161648026 - AluSx SINE Alu -8 304 1 1567 290 53 43 chr4 40680409 40681308 -161647039 + L1ME LINE L1 7 918 -5152 2210 105 10 0 chr4 40681308 40681604 -161646743 + AluSg SINE Alu 1 299 -11 1567 290 53 43 chr4 40681604 40681703 -161646644 + L1ME LINE L1 918 1015 -5055 284 330 9 0 chr4 40681969 40682075 -161646272 + L1ME LINE L1 5477 5583 -579 198 171 0 0 chr4 40682219 40682260 -161646087 + (CA)n Simple_repeat Simple_repeat 2 42 0 392 281 46 49 chr4 40682629 40682914 -161645433 - L1ME2 LINE L1 -20 6144 5861 309 211 13 26 chr4 40682938 40683014 -161645333 - L1MCa LINE L1 -4363 2063 1989 443 203 11 11 chr4 40683026 40683203 -161645144 + (TA)n Simple_repeat Simple_repeat 2 178 0 293 300 45 31 chr4 40683203 40683426 -161644921 - L1ME2 LINE L1 -327 5837 5612 2336 66 7 3 chr4 40683439 40683741 -161644606 - AluY SINE Alu -8 303 1 2038 225 28 35 chr4 40683743 40684285 -161644062 + MER44D DNA MER2_type 1 593 -12 3138 236 25 16 chr4 40684332 40685259 -161643088 + L1ME LINE L1 2550 3484 -2596 620 169 70 95 chr4 40685252 40685336 -161643011 + L1MC5 LINE L1 7648 7733 -228 * 1984 105 61 0 chr4 40685336 40685613 -161642734 + AluSx SINE Alu 1 294 -18 620 169 70 95 chr4 40685613 40685801 -161642546 + L1MC5 LINE L1 7733 7913 -48 1926 156 0 23 chr4 40685812 40686114 -161642233 - AluSx SINE Alu -14 298 4 1183 220 226 36 chr4 40686133 40686747 -161641600 + HAL1 LINE L1 1140 1870 -637 258 237 49 112 chr4 40686846 40686948 -161641399 + HAL1 LINE L1 2043 2125 -382 1847 164 3 20 chr4 40686948 40687246 -161641101 + AluJo SINE Alu 1 293 -19 258 237 49 112 chr4 40687246 40687367 -161640980 + HAL1 LINE L1 2125 2252 -255 1802 157 23 26 chr4 40687379 40687684 -161640663 + AluJo SINE Alu 1 304 -8 2435 54 0 41 chr4 40687801 40688116 -161640231 - AluY SINE Alu -9 302 1 2230 107 3 3 chr4 40688736 40689036 -161639311 + AluSq SINE Alu 1 300 -13 759 284 81 49 chr4 40690477 40691047 -161637300 - L1MCa LINE L1 -5281 1135 548 2120 117 0 0 chr4 40691621 40691928 -161636419 + AluSx SINE Alu 1 307 0 2573 74 0 3 chr4 40692155 40692464 -161635883 + AluSq SINE Alu 1 308 -5 1604 198 0 18 chr4 40692524 40692807 -161635540 - AluSx SINE Alu -15 297 20 1310 206 29 39 chr4 40693096 40693407 -161634940 + AluJo SINE Alu 1 308 -4 2034 130 23 10 chr4 40693804 40694112 -161634235 + AluSx SINE Alu 1 312 0 1475 140 34 93 chr4 40694123 40694445 -161633902 + AluJb SINE Alu 1 303 -9 1969 73 91 22 chr4 40694596 40694871 -161633476 + AluSq SINE Alu 6 299 -14 198 0 0 0 chr4 40695817 40695839 -161632508 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 3504 204 74 11 chr4 40696014 40696639 -161631708 + L1ME LINE L1 3647 4356 -1724 2092 134 0 3 chr4 40696639 40696938 -161631409 + AluSq SINE Alu 2 299 -14 3504 204 74 11 chr4 40696938 40697285 -161631062 + L1ME LINE L1 4356 4680 -1400 915 198 119 64 chr4 40697303 40697509 -161630838 + L1ME LINE L1 4891 5084 -1016 1693 214 0 0 chr4 40697509 40697812 -161630535 + AluJo SINE Alu 1 303 -9 915 198 119 64 chr4 40697812 40698137 -161630210 + L1ME LINE L1 5084 5458 -642 * 16608 135 17 94 chr4 40698131 40701965 -161626382 - L1P LINE L1 -2597 3549 12 380 261 43 26 chr4 40702008 40702123 -161626224 - MIR SINE MIR -141 121 5 487 265 73 0 chr4 40702197 40702333 -161626014 - MIR SINE MIR -56 206 61 264 326 99 23 chr4 40703092 40703220 -161625127 - MIR SINE MIR -56 152 30 21 0 0 0 chr4 40703724 40703745 -161624602 + AT_rich Low_complexity Low_complexity 1 21 0 240 346 0 48 chr4 40703807 40703911 -161624436 - MIR3 SINE MIR -6 202 104 2209 161 3 8 chr4 40704102 40704469 -161623878 - MLT1A1 LTR MaLR 0 365 1 242 278 41 21 chr4 40705167 40705264 -161623083 + LTR67 LTR ERVL 123 221 -336 373 213 56 120 chr4 40705318 40705534 -161622813 + LTR67 LTR ERVL 356 557 0 329 339 0 9 chr4 40705660 40705769 -161622578 + MIR SINE MIR 35 142 -120 1922 173 54 5 chr4 40705784 40706155 -161622192 + MLT1B LTR MaLR 1 389 -1 760 171 0 0 chr4 40706182 40706305 -161622042 + FLAM_C SINE Alu 2 124 -9 186 247 169 34 chr4 40706328 40706417 -161621930 + MIR SINE MIR 157 257 -5 455 309 48 39 chr4 40707063 40707293 -161621054 + L1MC/D LINE L1 5449 5680 -2128 881 160 0 0 chr4 40707324 40707455 -161620892 - FLAM_C SINE Alu -10 133 3 2240 114 3 0 chr4 40707713 40708010 -161620337 - AluSx SINE Alu -14 298 1 482 208 0 28 chr4 40708010 40708116 -161620231 - L1 LINE L1 -3058 3088 2986 894 197 39 35 chr4 40708786 40708989 -161619358 - MER20 DNA MER1_type -14 205 2 499 292 55 23 chr4 40709090 40709309 -161619038 + MIR SINE MIR 24 249 -13 2149 121 0 3 chr4 40709499 40709797 -161618550 + AluSx SINE Alu 1 297 -15 2264 101 0 38 chr4 40710455 40710772 -161617575 + AluSx SINE Alu 1 305 -7 236 179 134 15 chr4 40710787 40710854 -161617493 + Charlie7 DNA MER1_type 2063 2137 -475 381 269 72 45 chr4 40710970 40711193 -161617154 + HAL1 LINE L1 1234 1462 -1045 1437 179 0 4 chr4 40711213 40711448 -161616899 - Tigger2a DNA MER2_type 0 434 201 1126 146 0 0 chr4 40711453 40711624 -161616723 + FRAM SINE Alu 1 171 -5 958 132 143 37 chr4 40711628 40711817 -161616530 - Tigger2a DNA MER2_type -225 209 1 1563 212 102 28 chr4 40711817 40712247 -161616100 - MLT1C LTR MaLR 0 467 6 614 269 104 10 chr4 40712252 40712453 -161615894 + HAL1 LINE L1 1474 1693 -814 28 61 0 0 chr4 40712571 40712620 -161615727 + AT_rich Low_complexity Low_complexity 1 49 0 1233 224 118 41 chr4 40712691 40713518 -161614829 - HAL1 LINE L1 -85 2422 1425 479 245 180 61 chr4 40713523 40713768 -161614579 + MLT1J LTR MaLR 205 478 -33 420 288 91 64 chr4 40714622 40714975 -161613372 + L1M4 LINE L1 2382 2724 -3422 4171 98 8 16 chr4 40714975 40715610 -161612737 - L1MA4A LINE L1 0 6303 5674 420 288 91 64 chr4 40715610 40716190 -161612157 + L1M4 LINE L1 2724 3340 -2806 1994 150 38 9 chr4 40716531 40716871 -161611476 + MLT1A1 LTR MaLR 1 350 -15 186 118 0 0 chr4 40716999 40717033 -161611314 + (TC)n Simple_repeat Simple_repeat 2 35 0 533 260 35 98 chr4 40718014 40718095 -161610252 + MLT1I LTR MaLR 71 156 -253 1685 172 0 41 chr4 40718095 40718437 -161609910 - AluJo SINE Alu 0 312 1 533 260 35 98 chr4 40718437 40718701 -161609646 + MLT1I LTR MaLR 156 394 -15 262 298 73 73 chr4 40718773 40719018 -161609329 - L2 LINE L2 -1 3271 3027 183 80 0 0 chr4 40721304 40721329 -161607018 + (TG)n Simple_repeat Simple_repeat 2 26 0 817 175 2 10 chr4 40721345 40721505 -161606842 - MLT2B1 LTR ERVL -39 476 318 385 266 11 0 chr4 40721507 40721601 -161606746 - MLT2B1 LTR ERVL -356 164 70 1137 147 0 0 chr4 40721601 40721764 -161606583 - AluJb SINE Alu -16 296 134 327 240 40 0 chr4 40721764 40721839 -161606508 - MLT2B1 LTR ERVL -441 79 2 27 29 0 0 chr4 40723102 40723136 -161605211 + AT_rich Low_complexity Low_complexity 1 34 0 210 231 0 19 chr4 40723525 40723577 -161604770 + C-rich Low_complexity Low_complexity 5 55 0 2271 214 28 6 chr4 40724041 40724546 -161603801 + LTR53 LTR ERVL 4 519 0 221 233 27 14 chr4 40724596 40724669 -161603678 + MIR SINE MIR 80 153 -109 245 258 192 17 chr4 40725336 40725456 -161602891 + MIR SINE MIR 65 205 -57 205 326 42 0 chr4 40725783 40725878 -161602469 + CT-rich Low_complexity Low_complexity 5 103 0 181 333 13 0 chr4 40727454 40727532 -161600815 + L2 LINE L2 3194 3272 0 1969 197 61 14 chr4 40727579 40728020 -161600327 - MLT1C LTR MaLR 0 467 6 355 294 69 91 chr4 40728346 40728754 -161599593 + HAL1 LINE L1 63 461 -2046 287 287 16 41 chr4 40728910 40729032 -161599315 + MIR SINE MIR 47 165 -97 324 278 168 37 chr4 40729350 40729732 -161598615 - L2 LINE L2 -25 3288 2857 189 245 19 0 chr4 40730279 40730332 -161598015 + MIR SINE MIR 50 103 -159 253 301 146 8 chr4 40732649 40732772 -161595575 - MER91C DNA MER1_type 0 140 1 397 273 12 22 chr4 40733643 40734083 -161594264 + CT-rich Low_complexity Low_complexity 1 435 0 489 315 50 14 chr4 40735046 40735268 -161593079 - MIR SINE MIR -16 246 17 662 157 96 0 chr4 40735431 40735546 -161592801 - MER63 DNA MER1_type -84 752 1 193 224 41 0 chr4 40737315 40737364 -161590983 + L2 LINE L2 3262 3312 -1 203 229 36 24 chr4 40737635 40737718 -161590629 + GA-rich Low_complexity Low_complexity 6 89 0 216 156 44 0 chr4 40738760 40738805 -161589542 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 2269 92 0 4 chr4 40739030 40739341 -161589006 - AluSx SINE Alu 0 312 3 1779 172 3 14 chr4 40739348 40739639 -161588708 - AluJb SINE Alu -24 288 1 746 183 0 8 chr4 40740227 40740353 -161587994 - FLAM_C SINE Alu -17 126 2 365 315 4 0 chr4 40740524 40740764 -161587583 + (CA)n Simple_repeat Simple_repeat 1 241 0 186 208 0 0 chr4 40740806 40740854 -161587493 + (CA)n Simple_repeat Simple_repeat 2 49 0 492 236 188 14 chr4 40740933 40741077 -161587270 - MER5A DNA MER1_type -12 177 9 23 33 0 0 chr4 40741204 40741234 -161587113 + AT_rich Low_complexity Low_complexity 1 30 0 585 329 88 7 chr4 40741590 40742020 -161586327 + L2 LINE L2 2606 3073 -240 1740 114 122 0 chr4 40742172 40742427 -161585920 + AluSq SINE Alu 1 286 -27 6612 46 2 3 chr4 40742427 40743887 -161584460 + L1PA5 LINE L1 4587 6045 -109 553 226 37 12 chr4 40743887 40744051 -161584296 + MIR SINE MIR 92 259 -3 189 107 0 0 chr4 40745049 40745077 -161583270 + (CTATT)n Simple_repeat Simple_repeat 3 30 0 321 289 26 46 chr4 40745244 40745396 -161582951 - MIR SINE MIR -46 216 68 22 0 0 0 chr4 40746839 40746861 -161581486 + AT_rich Low_complexity Low_complexity 1 22 0 397 299 126 0 chr4 40746891 40747065 -161581282 - MIR SINE MIR -56 206 11 216 0 0 0 chr4 40749334 40749358 -161578989 + (TA)n Simple_repeat Simple_repeat 2 25 0 276 224 0 61 chr4 40749358 40749456 -161578891 + L1MC4 LINE L1 6614 6705 -1337 31 0 0 0 chr4 40750094 40750125 -161578222 + AT_rich Low_complexity Low_complexity 1 31 0 1053 156 62 58 chr4 40751518 40751612 -161576735 + MER31-int LTR ERV1 3985 4077 -859 2540 81 0 0 chr4 40751612 40751919 -161576428 + AluY SINE Alu 1 307 -4 1053 156 62 58 chr4 40751919 40752048 -161576299 + MER31-int LTR ERV1 4077 4209 -727 295 210 136 12 chr4 40752067 40752148 -161576199 + LTR37A LTR ERV1 1 91 -335 986 186 16 78 chr4 40752159 40752401 -161575946 + MER31-int LTR ERV1 4340 4566 -370 1667 181 88 60 chr4 40752434 40752887 -161575460 + MER31B LTR ERV1 1 466 0 2299 86 0 49 chr4 40753622 40753947 -161574400 - AluSc SINE Alu 0 309 1 30 27 0 0 chr4 40754473 40754510 -161573837 + AT_rich Low_complexity Low_complexity 1 37 0 2250 97 31 0 chr4 40754608 40754896 -161573451 + AluSq SINE Alu 1 297 -16 370 273 55 0 chr4 40754968 40755078 -161573269 - MIR SINE MIR -136 126 11 2344 48 65 3 chr4 40755259 40755550 -161572797 + AluY SINE Alu 3 311 0 1812 109 0 127 chr4 40756316 40756656 -161571691 + AluSx SINE Alu 1 297 -5 23 33 0 0 chr4 40757051 40757081 -161571266 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr4 40757245 40757273 -161571074 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr4 40757713 40757738 -161570609 + AT_rich Low_complexity Low_complexity 1 25 0 467 213 0 0 chr4 40757920 40758014 -161570333 - MER92B LTR ERV1 0 636 543 1213 215 124 43 chr4 40758033 40758405 -161569942 - MER92B LTR ERV1 -233 403 2 1969 124 3 10 chr4 40758589 40758887 -161569460 + AluSx SINE Alu 1 296 -16 254 230 36 6 chr4 40759329 40759494 -161568853 + (TA)n Simple_repeat Simple_repeat 2 171 0 22 0 0 0 chr4 40759498 40759520 -161568827 + AT_rich Low_complexity Low_complexity 1 22 0 2330 77 0 3 chr4 40759525 40759825 -161568522 + AluSc SINE Alu 2 300 -9 240 257 28 9 chr4 40759857 40759966 -161568381 + (TA)n Simple_repeat Simple_repeat 1 111 0 209 278 217 17 chr4 40759981 40760096 -161568251 - L3 LINE CR1 -224 1353 1216 389 246 108 0 chr4 40761224 40761354 -161566993 - L1MD2 LINE L1 -2 6357 6214 980 151 104 0 chr4 40761368 40761560 -161566787 - L1PA16 LINE L1 -17 6149 5938 677 240 64 80 chr4 40761554 40761769 -161566578 - L1MD2 LINE L1 -131 6228 6018 * 2259 91 0 0 chr4 40761769 40762065 -161566282 + AluSg SINE Alu 1 296 -14 677 240 64 80 chr4 40762065 40762162 -161566185 - L1MD2 LINE L1 -341 6018 5921 2536 149 39 5 chr4 40762180 40762757 -161565590 - L1M2 LINE L1 -577 5714 5115 1657 155 44 26 chr4 40762759 40763101 -161565246 + L1MA7 LINE L1 5938 6285 -6 1227 244 16 142 chr4 40763118 40763822 -161564525 - L1MB3 LINE L1 -255 5928 5314 313 294 94 19 chr4 40764122 40764282 -161564065 + MIR SINE MIR 91 262 0 1551 179 3 27 chr4 40764566 40764862 -161563485 - AluJo SINE Alu -23 289 1 215 292 99 109 chr4 40765407 40765599 -161562748 - L2 LINE L2 -493 2821 2632 296 350 43 21 chr4 40765885 40766071 -161562276 + L2 LINE L2 1840 2029 -1285 228 209 58 122 chr4 40766409 40766548 -161561799 + L2 LINE L2 2915 3044 -228 370 247 0 34 chr4 40766944 40767033 -161561314 - MIR SINE MIR -121 141 56 215 279 16 0 chr4 40767397 40767458 -161560889 + GA-rich Low_complexity Low_complexity 3 64 0 229 281 124 11 chr4 40768156 40768245 -161560102 - L2 LINE L2 -5 3308 3210 4675 170 33 13 chr4 40768514 40769275 -161559072 + L1MB3 LINE L1 4697 5441 -742 333 82 0 0 chr4 40769275 40769324 -161559023 + (CA)n Simple_repeat Simple_repeat 2 50 0 4675 170 33 13 chr4 40769324 40769898 -161558449 + L1MB3 LINE L1 5441 6064 -119 2942 116 29 9 chr4 40769898 40770354 -161557993 + MER4C LTR ERV1 1 465 0 4675 170 33 13 chr4 40770354 40770467 -161557880 + L1MB3 LINE L1 6064 6173 -10 206 200 0 0 chr4 40770468 40770503 -161557844 + (TG)n Simple_repeat Simple_repeat 2 36 0 326 186 12 58 chr4 40770503 40770589 -161557758 + L1MC4 LINE L1 6172 6253 -1789 * 435 168 0 93 chr4 40770587 40770694 -161557653 - L1MC3 LINE L1 -1805 5980 5884 891 184 60 0 chr4 40770694 40770862 -161557485 + L1MC3 LINE L1 6224 6401 -1384 389 104 0 90 chr4 40770863 40770930 -161557417 - MER50 LTR ERV1 -30 704 644 230 296 34 34 chr4 40771360 40771448 -161556899 - MIR3 SINE MIR -9 199 112 192 268 0 36 chr4 40773198 40773254 -161555093 - MIR3 SINE MIR -54 154 101 2202 98 0 31 chr4 40774177 40774495 -161553852 - AluSc SINE Alu 0 309 2 192 311 81 0 chr4 40774571 40774645 -161553702 - L2 LINE L2 -5 3308 3229 182 281 158 24 chr4 40778364 40778446 -161549901 - MIR SINE MIR -59 149 57 500 275 17 51 chr4 40778461 40778639 -161549708 - MIR3 SINE MIR -5 203 32 294 238 16 0 chr4 40778641 40778704 -161549643 - MIR3 SINE MIR -52 156 93 222 347 0 13 chr4 40779622 40779697 -161548650 - L2 LINE L2 -6 3266 3193 252 0 0 0 chr4 40781718 40781746 -161546601 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 2267 84 0 16 chr4 40782638 40782948 -161545399 + AluSp SINE Alu 1 305 -8 2014 116 41 0 chr4 40783806 40784100 -161544247 + AluSx SINE Alu 1 306 -6 693 180 52 82 chr4 40787029 40787223 -161541124 + MLT1E2 LTR MaLR 1 188 -438 731 116 50 16 chr4 40787253 40787374 -161540973 + FLAM_C SINE Alu 5 129 -14 1607 190 50 62 chr4 40787377 40787535 -161540812 + MLT1E2 LTR MaLR 235 394 -232 2250 61 3 71 chr4 40787535 40787861 -161540486 - AluSp SINE Alu -9 304 1 1607 190 50 62 chr4 40787861 40788086 -161540261 + MLT1E2 LTR MaLR 394 613 -13 407 250 0 22 chr4 40788321 40788413 -161539934 + MER21B LTR ERV1 3 92 -771 2342 78 0 0 chr4 40788434 40788728 -161539619 + AluSc SINE Alu 1 294 -15 2154 210 75 124 chr4 40788730 40789478 -161538869 + MER21B LTR ERV1 24 724 -139 300 53 0 0 chr4 40789478 40789516 -161538831 + (GGATG)n Simple_repeat Simple_repeat 5 42 0 2154 210 75 124 chr4 40789516 40789639 -161538708 + MER21B LTR ERV1 724 852 -11 181 365 0 0 chr4 40789657 40789720 -161538627 + L2 LINE L2 3208 3270 -2 443 229 0 7 chr4 40789980 40790120 -161538227 + (CCCTAA)n Simple_repeat Simple_repeat 1 139 0 219 355 0 6 chr4 40790220 40790389 -161537958 + (ACTTG)n Simple_repeat Simple_repeat 5 172 0 204 320 13 13 chr4 40790987 40791137 -161537210 + (ACTTG)n Simple_repeat Simple_repeat 4 153 0 255 326 6 6 chr4 40791201 40791379 -161536968 + (ACTTG)n Simple_repeat Simple_repeat 2 179 0 1030 166 0 0 chr4 40791972 40792141 -161536206 - AluJ SINE Alu -11 301 133 257 0 30 0 chr4 40792141 40792174 -161536173 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 1778 139 4 7 chr4 40792174 40792455 -161535892 - AluSg SINE Alu -30 280 1 254 98 24 0 chr4 40792473 40792514 -161535833 - MADE1 DNA Mariner 0 80 39 771 177 39 0 chr4 40792514 40792644 -161535703 - AluJ SINE Alu -176 136 2 273 183 0 0 chr4 40792670 40792730 -161535617 + (CCCTAA)n Simple_repeat Simple_repeat 5 64 0 346 216 0 8 chr4 40792835 40792927 -161535420 + L1MC/D LINE L1 3668 3754 -2392 1089 204 0 0 chr4 40792937 40793113 -161535234 + MER8 DNA MER2_type 1 176 -63 2168 96 7 0 chr4 40793212 40793503 -161534844 + AluSp SINE Alu 1 293 -20 458 299 206 15 chr4 40793549 40793947 -161534400 + L1MC4 LINE L1 7373 7846 -196 267 253 24 0 chr4 40793983 40794066 -161534281 + L1MC4 LINE L1 7956 8040 -2 423 292 25 79 chr4 40794271 40794511 -161533836 - TAR1 Satellite telomeric -154 1957 1731 1984 96 4 0 chr4 40794674 40794954 -161533393 + AluSx SINE Alu 21 301 -11 1316 209 63 41 chr4 40795021 40795560 -161532787 + L1MC/D LINE L1 4898 5448 -872 2072 106 0 3 chr4 40795560 40795853 -161532494 + AluSq SINE Alu 2 293 -20 1316 209 63 41 chr4 40795853 40795986 -161532361 + L1MC/D LINE L1 5448 5577 -743 2590 127 52 15 chr4 40795986 40796423 -161531924 + MER34C LTR ERV1 2 455 -130 1590 88 0 9 chr4 40796423 40796613 -161531734 - AluSx SINE Alu 0 323 134 2044 82 3 60 chr4 40796613 40796949 -161531398 - AluSp SINE Alu 0 313 1 1590 88 0 9 chr4 40796949 40797012 -161531335 - AluSx SINE Alu -189 134 72 549 104 13 0 chr4 40797113 40797190 -161531157 - AluSx SINE Alu -233 79 2 1457 109 14 0 chr4 40797207 40797418 -161530929 - MER31A LTR ERV1 -9 476 263 2296 94 0 0 chr4 40797433 40797742 -161530605 + AluSg SINE Alu 2 310 0 1591 168 14 14 chr4 40797834 40798131 -161530216 + AluJo SINE Alu 1 297 -15 755 221 20 0 chr4 40798357 40798506 -161529841 + LTR51 LTR ERV1 236 387 -284 2605 201 48 70 chr4 40798510 40799242 -161529105 - MER50 LTR ERV1 -9 725 10 661 248 81 12 chr4 40799236 40799482 -161528865 + LTR51 LTR ERV1 380 842 -81 * 252 368 103 0 chr4 40800329 40800446 -161527901 - MIR SINE MIR -59 149 21 293 338 80 7 chr4 40801946 40802097 -161526250 + MLT1J2 LTR MaLR 263 424 -26 566 193 50 34 chr4 40802141 40802260 -161526087 - MLT1K LTR MaLR -89 499 379 438 240 120 8 chr4 40802474 40802599 -161525748 + MLT1D LTR MaLR 1 139 -366 392 258 106 0 chr4 40802732 40802864 -161525483 + MIR SINE MIR 78 223 -39 2209 120 0 0 chr4 40803030 40803355 -161524992 - L1PA14 LINE L1 0 6161 5837 1733 97 4 0 chr4 40803355 40803592 -161524755 + L1PA14 LINE L1 5575 5812 -349 196 288 51 0 chr4 40803592 40803651 -161524696 + MIR SINE MIR 123 184 -78 568 259 46 10 chr4 40803742 40803939 -161524408 + MER20 DNA MER1_type 2 205 -14 243 0 0 0 chr4 40804068 40804095 -161524252 + (TTTTTG)n Simple_repeat Simple_repeat 6 32 0 244 210 170 10 chr4 40804766 40804866 -161523481 - L2 LINE L2 -2 3311 3196 181 283 33 0 chr4 40804919 40804979 -161523368 + MIR SINE MIR 84 145 -63 696 130 0 0 chr4 40807524 40807639 -161520708 + (TG)n Simple_repeat Simple_repeat 1 115 0 2150 99 0 10 chr4 40808401 40808705 -161519642 + AluSq SINE Alu 1 301 -12 239 273 15 0 chr4 40808887 40808953 -161519394 + L2 LINE L2 3240 3306 -7 940 220 75 83 chr4 40810288 40810757 -161517590 + MLT1C LTR MaLR 3 467 0 874 227 85 7 chr4 40813997 40814443 -161513904 + MLT1D LTR MaLR 3 505 0 199 286 114 14 chr4 40814469 40814539 -161513808 + MIR SINE MIR 108 184 -78 210 241 17 0 chr4 40814769 40814827 -161513520 + CT-rich Low_complexity Low_complexity 3 61 0 190 93 23 23 chr4 40815779 40815822 -161512525 + (TG)n Simple_repeat Simple_repeat 2 44 0 442 188 40 40 chr4 40816016 40816192 -161512155 + (TG)n Simple_repeat Simple_repeat 1 176 0 357 129 51 45 chr4 40816230 40816408 -161511939 + (TG)n Simple_repeat Simple_repeat 1 179 0 357 239 246 0 chr4 40816652 40816782 -161511565 - MER5A DNA MER1_type -16 173 12 2120 104 7 3 chr4 40817622 40817930 -161510417 - AluSg1 SINE Alu 0 309 1 229 173 154 58 chr4 40818283 40818387 -161509960 - MER41C LTR ERV1 -39 515 402 397 242 11 0 chr4 40818745 40818836 -161509511 - LTR43 LTR ERV1 -324 278 187 711 185 33 29 chr4 40820301 40820463 -161507884 - MER45A DNA AcHobo 0 178 12 1780 199 20 34 chr4 40821567 40821622 -161506725 - MLT1B LTR MaLR 0 396 342 1880 153 9 24 chr4 40821622 40821961 -161506386 - MER1B DNA MER1_type 0 337 4 1780 199 20 34 chr4 40821961 40822299 -161506048 - MLT1B LTR MaLR -54 342 2 1745 194 33 22 chr4 40822444 40822809 -161505538 + L1MC3 LINE L1 7077 7445 -340 290 164 55 0 chr4 40822832 40822887 -161505460 + MER66B LTR ERV1 295 352 -134 336 291 126 46 chr4 40822919 40823070 -161505277 + HAL1 LINE L1 1530 1692 -815 533 302 99 18 chr4 40823532 40823754 -161504593 + MIR SINE MIR 10 249 -13 281 80 0 100 chr4 40824332 40824382 -161503965 + Alu SINE Alu 2 46 -256 234 0 0 0 chr4 40824397 40824423 -161503924 + (CA)n Simple_repeat Simple_repeat 2 27 0 591 147 83 9 chr4 40824499 40824608 -161503739 + AluJb SINE Alu 180 296 -16 252 243 14 27 chr4 40825331 40825405 -161502942 + GA-rich Low_complexity Low_complexity 1 73 0 232 302 0 0 chr4 40825524 40825587 -161502760 + (CA)n Simple_repeat Simple_repeat 2 64 0 322 297 123 81 chr4 40825736 40825969 -161502378 + L1MDb LINE L1 911 1133 -5296 2208 93 0 37 chr4 40825969 40826292 -161502055 + AluSq SINE Alu 1 311 -2 1343 189 39 23 chr4 40826296 40826603 -161501744 + AluJb SINE Alu 1 312 0 322 297 123 81 chr4 40826603 40826941 -161501406 + L1MDb LINE L1 1135 1440 -4989 429 277 155 18 chr4 40826947 40827225 -161501122 + HAL1 LINE L1 1427 1742 -765 306 289 183 35 chr4 40827583 40827780 -161500567 + HAL1b LINE L1 705 930 -418 399 315 107 27 chr4 40828242 40828652 -161499695 + L1ME4a LINE L1 5585 6027 -94 1095 133 0 28 chr4 40829929 40830110 -161498237 + FRAM SINE Alu 1 176 0 424 242 194 0 chr4 40830584 40830708 -161497639 - MIR SINE MIR -79 183 36 1889 227 130 11 chr4 40831866 40832413 -161495934 + MER90 LTR ERV1 3 614 0 664 219 31 0 chr4 40832806 40832934 -161495413 - AluJb SINE Alu -19 293 162 198 0 0 0 chr4 40832935 40832957 -161495390 + (A)n Simple_repeat Simple_repeat 1 22 0 1435 195 26 7 chr4 40833106 40833408 -161494939 + AluJb SINE Alu 1 308 -4 2053 125 0 7 chr4 40833430 40833735 -161494612 + AluSx SINE Alu 1 303 -9 817 94 0 0 chr4 40833892 40833998 -161494349 - AluY SINE Alu -16 295 190 1546 138 0 19 chr4 40834096 40834357 -161493990 - AluJb SINE Alu -32 280 25 2155 98 16 0 chr4 40834811 40835164 -161493183 - AluSx SINE Alu 0 358 1 580 306 83 25 chr4 40835724 40836156 -161492191 - L1ME1 LINE L1 -5 6161 5705 281 266 87 82 chr4 40836164 40836348 -161491999 - L2 LINE L2 -1512 1802 1618 1667 119 76 4 chr4 40836406 40836683 -161491664 + AluSx SINE Alu 1 297 -15 290 146 0 0 chr4 40836714 40836762 -161491585 - MLT2C1 LTR ERVL 0 397 350 185 230 7 37 chr4 40836797 40836932 -161491415 + (TA)n Simple_repeat Simple_repeat 1 131 0 231 250 16 0 chr4 40836999 40837063 -161491284 + (TA)n Simple_repeat Simple_repeat 2 66 0 316 244 23 43 chr4 40837068 40837178 -161491169 - L1MCa LINE L1 -1337 6985 1995 1940 99 23 10 chr4 40837356 40837659 -161490688 + AluSq SINE Alu 1 307 -6 1793 92 88 7 chr4 40837718 40837990 -161490357 + AluSc SINE Alu 1 294 -15 778 199 0 57 chr4 40837999 40838175 -161490172 + FRAM SINE Alu 1 165 -11 658 212 179 5 chr4 40838247 40838431 -161489916 + MER20 DNA MER1_type 1 216 -3 2157 90 7 0 chr4 40838438 40838727 -161489620 + AluSq SINE Alu 2 292 -21 612 252 30 70 chr4 40838745 40838943 -161489404 + L1ME3A LINE L1 5652 5841 -325 1914 139 0 20 chr4 40838943 40839245 -161489102 + AluSx SINE Alu 3 298 -14 612 252 30 70 chr4 40839245 40839276 -161489071 + L1ME3A LINE L1 5841 5872 -294 1815 145 32 0 chr4 40839592 40839874 -161488473 - AluSx SINE Alu -20 292 2 1677 118 0 0 chr4 40840070 40840299 -161488048 + AluSx SINE Alu 1 229 -83 226 48 0 48 chr4 40840311 40840353 -161487994 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 2071 128 3 0 chr4 40840471 40840768 -161487579 - AluSx SINE Alu -14 298 1 1695 150 7 20 chr4 40840963 40841263 -161487084 + AluJo SINE Alu 12 307 -5 2134 107 0 16 chr4 40841263 40841579 -161486768 + AluSx SINE Alu 1 312 0 2206 89 3 0 chr4 40841598 40841890 -161486457 + AluSp SINE Alu 2 294 -19 1658 74 5 0 chr4 40841891 40842106 -161486241 + AluSg/x SINE Alu 83 298 -14 2055 122 3 0 chr4 40842647 40842951 -161485396 + AluSx SINE Alu 1 305 -7 918 125 0 22 chr4 40843027 40843163 -161485184 + FLAM_C SINE Alu 1 133 0 2353 88 0 0 chr4 40843185 40843491 -161484856 + AluSg SINE Alu 1 306 -4 1994 136 7 0 chr4 40844049 40844359 -161483988 - AluSq SINE Alu 0 313 2 373 272 41 47 chr4 40844640 40844845 -161483502 - MIR SINE MIR -25 237 30 198 167 0 0 chr4 40844893 40844929 -161483418 + A-rich Low_complexity Low_complexity 2 37 0 2279 100 3 0 chr4 40845186 40845495 -161482852 + AluSq SINE Alu 1 310 -3 716 221 117 29 chr4 40845573 40845813 -161482534 + L1MC4 LINE L1 7602 7862 -180 22 35 0 0 chr4 40846331 40846360 -161481987 + AT_rich Low_complexity Low_complexity 1 29 0 1727 121 6 82 chr4 40846501 40846816 -161481531 + AluSx SINE Alu 1 291 -21 2237 86 0 10 chr4 40846819 40847133 -161481214 + AluY SINE Alu 1 311 0 640 150 154 91 chr4 40847914 40848134 -161480213 + MER46A DNA MER2_type 2 235 -1 23 33 0 0 chr4 40848138 40848168 -161480179 + AT_rich Low_complexity Low_complexity 1 30 0 2018 121 0 16 chr4 40848172 40848477 -161479870 + AluSx SINE Alu 2 301 -11 394 161 23 23 chr4 40848500 40848587 -161479760 - MER112 DNA MER1_type -151 109 23 359 294 99 60 chr4 40848622 40848986 -161479361 - L2 LINE L2 -2 3311 2934 202 299 81 58 chr4 40849167 40849475 -161478872 - L2 LINE L2 -710 2604 2290 300 200 67 40 chr4 40849687 40849762 -161478585 + L2 LINE L2 3204 3280 -33 2144 91 3 7 chr4 40850201 40850498 -161477849 + AluSp SINE Alu 1 296 -17 388 233 70 39 chr4 40850603 40850732 -161477615 - L1ME4a LINE L1 -2 6119 5987 238 234 90 112 chr4 40850853 40851041 -161477306 - L2 LINE L2 -221 3051 2868 2173 101 3 7 chr4 40851300 40851597 -161476750 + AluSq SINE Alu 1 296 -17 205 195 52 0 chr4 40851607 40851684 -161476663 + (TATAA)n Simple_repeat Simple_repeat 3 83 0 773 171 39 0 chr4 40851789 40851918 -161476429 + AluJo SINE Alu 2 135 -177 1752 64 0 0 chr4 40851942 40852161 -161476186 + L1PA6 LINE L1 5936 6154 0 1984 73 52 11 chr4 40852162 40852448 -161475899 + AluSg SINE Alu 1 298 -12 1201 209 60 11 chr4 40852640 40852923 -161475424 + AluJo SINE Alu 1 297 -15 2008 98 13 36 chr4 40852951 40853257 -161475090 + AluSx SINE Alu 1 299 -13 2238 73 0 7 chr4 40853388 40853717 -161474630 + AluY SINE Alu 1 327 0 180 0 0 0 chr4 40853794 40853814 -161474533 + (TA)n Simple_repeat Simple_repeat 1 20 0 2137 158 47 27 chr4 40853814 40854263 -161474084 + L1MB8 LINE L1 5649 6106 -72 1739 122 44 0 chr4 40854264 40854593 -161473754 - AluSx SINE Alu 0 341 1 2216 73 0 0 chr4 40857542 40857830 -161470517 - AluSx SINE Alu -24 288 1 591 236 52 17 chr4 40857952 40858126 -161470221 - MIR SINE MIR -6 256 77 1672 147 6 58 chr4 40858689 40858881 -161469466 - AluSx SINE Alu -2 310 140 2165 102 0 0 chr4 40858881 40859175 -161469172 - AluY SINE Alu -17 294 1 1672 147 6 58 chr4 40859175 40859309 -161469038 - AluSx SINE Alu -172 140 1 1820 145 7 7 chr4 40859361 40859671 -161468676 - AluJb SINE Alu -2 310 1 2110 132 0 0 chr4 40859752 40860063 -161468284 + AluSq SINE Alu 1 311 -2 2362 77 0 7 chr4 40860089 40860399 -161467948 + AluY SINE Alu 1 308 -3 865 195 51 96 chr4 40860475 40860692 -161467655 + MSTD LTR MaLR 87 340 -56 862 133 0 22 chr4 40860692 40860827 -161467520 + FLAM_C SINE Alu 2 133 0 865 195 51 96 chr4 40860827 40860882 -161467465 + MSTD LTR MaLR 340 396 0 411 317 8 16 chr4 40861531 40861562 -161466785 + L1MC4 LINE L1 6582 6612 -1430 1950 130 23 10 chr4 40861562 40861869 -161466478 + AluSq SINE Alu 1 311 -2 411 317 8 16 chr4 40861869 40861960 -161466387 + L1MC4 LINE L1 6612 6703 -1339 366 223 56 80 chr4 40861898 40862052 -161466295 - L1MC4 LINE L1 -1339 6983 1930 * 1848 151 0 0 chr4 40862269 40862593 -161465754 + AluJb SINE Alu 1 324 0 662 192 8 0 chr4 40862638 40862758 -161465589 + FRAM SINE Alu 43 163 -13 21 0 0 0 chr4 40862846 40862867 -161465480 + AT_rich Low_complexity Low_complexity 1 21 0 2844 6 0 0 chr4 40863499 40863815 -161464532 + AluYb8 SINE Alu 1 316 -2 2046 100 0 11 chr4 40864106 40864411 -161463936 - AluSq SINE Alu 0 308 7 331 276 158 8 chr4 40864670 40864824 -161463523 - MIR SINE MIR -28 180 1 420 252 98 0 chr4 40865128 40865271 -161463076 + L1ME3 LINE L1 6005 6161 -1 480 298 88 80 chr4 40865479 40865630 -161462717 - L3 LINE CR1 -42 1535 1387 1510 187 0 14 chr4 40865630 40865913 -161462434 - AluJo SINE Alu -33 279 1 480 298 88 80 chr4 40865913 40866161 -161462186 - L3 LINE CR1 -190 1387 1133 349 323 209 18 chr4 40866245 40866734 -161461613 - L3 LINE CR1 -652 925 344 2004 138 0 0 chr4 40867242 40867540 -161460807 + AluSx SINE Alu 1 298 -14 1803 142 24 7 chr4 40867990 40868285 -161460062 + AluSx SINE Alu 1 300 -12 581 279 108 21 chr4 40869507 40869747 -161458600 + MIR SINE MIR 2 262 0 28 48 0 0 chr4 40870250 40870292 -161458055 + AT_rich Low_complexity Low_complexity 1 42 0 2055 112 0 28 chr4 40870599 40870920 -161457427 + AluSx SINE Alu 1 312 0 775 118 15 59 chr4 40870956 40871092 -161457255 + AluJo SINE Alu 7 136 -176 534 314 162 23 chr4 40871137 40871440 -161456907 + L3 LINE CR1 1210 1554 -23 2230 86 0 0 chr4 40872399 40872690 -161455657 - AluY SINE Alu -20 291 1 21 0 0 0 chr4 40872703 40872724 -161455623 + AT_rich Low_complexity Low_complexity 1 21 0 376 300 100 6 chr4 40872833 40872993 -161455354 + MIR3 SINE MIR 31 205 -3 222 37 0 0 chr4 40874636 40874663 -161453684 + (CA)n Simple_repeat Simple_repeat 2 28 0 201 39 0 0 chr4 40874837 40874863 -161453484 + (TTA)n Simple_repeat Simple_repeat 2 27 0 582 319 122 28 chr4 40875998 40876673 -161451674 - L2 LINE L2 -13 3300 2555 4445 126 3 39 chr4 40877002 40877033 -161451314 + L1PA16 LINE L1 5456 5487 -679 1906 164 0 3 chr4 40877033 40877345 -161451002 + AluJo SINE Alu 1 311 -1 4445 126 3 39 chr4 40877345 40878051 -161450296 + L1PA16 LINE L1 5487 6166 0 905 209 69 5 chr4 40878052 40878261 -161450086 + MIR SINE MIR 31 246 -16 391 271 18 42 chr4 40878607 40878773 -161449574 + MER103 DNA DNA 3 164 -2 895 156 0 0 chr4 40879105 40879246 -161449101 - AluSg/x SINE Alu -43 267 127 303 223 9 0 chr4 40879279 40879341 -161449006 - AluJ/monomer SINE Alu -251 52 2 402 74 0 0 chr4 40880301 40880355 -161447992 + (CA)n Simple_repeat Simple_repeat 1 54 0 1599 235 90 11 chr4 40880907 40881353 -161446994 + MER41E LTR ERV1 22 502 -10 1867 109 0 0 chr4 40881891 40882178 -161446169 + AluSx SINE Alu 36 312 0 2775 164 82 25 chr4 40883816 40884340 -161444007 - MLT2B3 LTR ERVL 0 554 1 5261 157 55 18 chr4 40884340 40885293 -161443054 - ERVL-B3 LTR ERVL -7 5757 4770 285 280 0 65 chr4 40885293 40885386 -161442961 + L2 LINE L2 3186 3272 0 2478 102 20 28 chr4 40885454 40885645 -161442702 + L1PA13 LINE L1 5773 5964 -199 1856 103 11 0 chr4 40885645 40885907 -161442440 + AluSx SINE Alu 1 265 -47 2478 102 20 28 chr4 40885907 40886109 -161442238 + L1PA13 LINE L1 5964 6163 0 835 239 125 18 chr4 40888063 40888335 -161440012 - LTR16C LTR ERVL 0 491 191 752 276 5 10 chr4 40888475 40888674 -161439673 - MIR SINE MIR -18 244 47 209 300 50 38 chr4 40888838 40888918 -161439429 + MER5A DNA MER1_type 91 171 -18 285 261 201 47 chr4 40889938 40890172 -161438175 + L2 LINE L2 3043 3312 -1 657 253 93 6 chr4 40890531 40890713 -161437634 + MIR SINE MIR 65 262 0 504 227 74 45 chr4 40890845 40891029 -161437318 + MER113 DNA MER1_type? 6 183 -338 2303 171 55 0 chr4 40891029 40891433 -161436914 - MSTB LTR MaLR 0 426 1 504 227 74 45 chr4 40891433 40891639 -161436708 + MER113 DNA MER1_type? 183 467 -54 276 259 30 52 chr4 40891703 40891838 -161436509 + MIR3 SINE MIR 2 133 -75 182 278 33 78 chr4 40891940 40892030 -161436317 + MER5A DNA MER1_type 3 88 -101 552 245 92 10 chr4 40892374 40892570 -161435777 - L1ME3 LINE L1 0 6162 5951 416 233 19 19 chr4 40893007 40893110 -161435237 + MIR3 SINE MIR 85 187 -21 244 228 30 5 chr4 40893224 40893309 -161435038 + MIR SINE MIR 8 147 -61 270 192 33 15 chr4 40893783 40893857 -161434490 - MIR SINE MIR -63 145 76 415 207 59 112 chr4 40894837 40895006 -161433341 + MIR SINE MIR 29 188 -74 218 254 28 28 chr4 40896538 40896609 -161431738 + MIR SINE MIR 49 119 -143 287 329 52 7 chr4 40896789 40896944 -161431403 + (CATG)n Simple_repeat Simple_repeat 1 162 0 237 357 7 19 chr4 40896868 40897022 -161431325 + (TG)n Simple_repeat Simple_repeat 1 152 0 * 326 270 82 19 chr4 40897372 40897531 -161430816 - MIR SINE MIR -48 214 46 480 274 189 37 chr4 40898015 40898343 -161430004 + L2 LINE L2 2935 3312 -1 2188 110 0 0 chr4 40898594 40898904 -161429443 - AluSx SINE Alu -2 310 1 392 324 0 0 chr4 40898977 40899088 -161429259 + MIR3 SINE MIR 57 167 -41 1511 231 80 11 chr4 40899091 40899454 -161428893 + MLT1F LTR MaLR 1 388 -154 1662 143 3 64 chr4 40899513 40899827 -161428520 + AluJb SINE Alu 1 295 -17 521 321 108 22 chr4 40899835 40900308 -161428039 + L2 LINE L2 2703 3236 -36 194 232 275 0 chr4 40900501 40900570 -161427777 - MIR3 SINE MIR -30 178 91 298 322 113 0 chr4 40901234 40901419 -161426928 + MIR SINE MIR 16 223 -39 180 0 0 0 chr4 40901445 40901465 -161426882 + (TTCA)n Simple_repeat Simple_repeat 1 20 0 395 255 43 0 chr4 40901465 40901559 -161426788 - L2 LINE L2 -13 3300 3203 706 282 102 42 chr4 40901619 40901952 -161426395 - MLT1I LTR MaLR -54 355 3 272 283 283 4 chr4 40901967 40902225 -161426122 - L2 LINE L2 -177 3136 2807 666 267 106 0 chr4 40902338 40902518 -161425829 + MIR SINE MIR 64 262 0 368 330 128 11 chr4 40903349 40903537 -161424810 - MIR SINE MIR -35 227 18 349 262 25 57 chr4 40903870 40903992 -161424355 + MIR3 SINE MIR 43 160 -48 318 257 208 7 chr4 40905712 40905856 -161422491 + MIR SINE MIR 20 192 -70 203 316 13 66 chr4 40906582 40906658 -161421689 + MIR3 SINE MIR 90 161 -47 475 266 188 33 chr4 40906868 40907139 -161421208 - L2 LINE L2 0 3313 3001 316 323 106 52 chr4 40907175 40907581 -161420766 - L2 LINE L2 -420 2894 2467 1594 178 0 34 chr4 40907620 40907941 -161420406 - AluJb SINE Alu -2 310 1 256 255 123 19 chr4 40908132 40908238 -161420109 - MLT1K LTR MaLR -8 580 464 262 243 107 29 chr4 40908622 40908725 -161419622 - MLT1K LTR MaLR -290 298 188 237 131 66 16 chr4 40909224 40909285 -161419062 + (GGGTG)n Simple_repeat Simple_repeat 3 66 0 295 274 0 48 chr4 40909446 40909530 -161418817 + MIR SINE MIR 69 148 -60 883 145 8 0 chr4 40909534 40909665 -161418682 + FLAM_C SINE Alu 3 132 -11 2056 142 6 13 chr4 40909769 40910080 -161418267 + AluJb SINE Alu 1 309 -3 475 265 37 56 chr4 40910299 40910388 -161417959 - MIR SINE MIR -15 247 158 1755 205 137 14 chr4 40910388 40910876 -161417471 - MLT1H LTR MaLR 0 549 2 475 265 37 56 chr4 40910876 40911001 -161417346 - MIR SINE MIR -104 158 37 269 231 154 11 chr4 40912846 40912937 -161415410 - L2 LINE L2 0 3313 3210 1765 138 37 0 chr4 40913383 40913724 -161414623 + AluSg SINE Alu 1 351 0 289 190 76 13 chr4 40913730 40913809 -161414538 - MLT1K LTR MaLR -331 257 174 328 265 41 0 chr4 40913922 40914020 -161414327 + MIR SINE MIR 117 218 -44 389 242 68 75 chr4 40914320 40914481 -161413866 + MIR SINE MIR 20 179 -83 232 248 10 59 chr4 40914591 40914692 -161413655 - L2 LINE L2 -50 3263 3168 210 241 12 12 chr4 40915024 40915107 -161413240 + (TG)n Simple_repeat Simple_repeat 2 84 0 256 329 7 7 chr4 40915192 40915335 -161413012 + (TG)n Simple_repeat Simple_repeat 2 144 0 414 0 0 0 chr4 40915418 40915464 -161412883 + (CA)n Simple_repeat Simple_repeat 2 47 0 353 22 22 0 chr4 40916775 40916821 -161411526 + (TC)n Simple_repeat Simple_repeat 2 48 0 1307 255 50 35 chr4 40917503 40918179 -161410168 - L2 LINE L2 -6 3307 2626 295 184 0 122 chr4 40918440 40918538 -161409809 + MER58B DNA MER1_type 251 336 -5 515 81 11 0 chr4 40918598 40918685 -161409662 + L1MA7 LINE L1 6204 6291 0 2105 130 7 0 chr4 40918791 40919098 -161409249 - AluSx SINE Alu -3 309 1 854 256 82 0 chr4 40919120 40919327 -161409020 - MER58A DNA MER1_type 0 224 1 266 291 107 15 chr4 40919359 40919505 -161408842 + MIR SINE MIR 29 196 -66 526 250 17 23 chr4 40920101 40920273 -161408074 + MER104 DNA Tc2 10 180 0 467 287 59 51 chr4 40920330 40920584 -161407763 - MIR SINE MIR -2 260 5 996 198 38 9 chr4 40920695 40920907 -161407440 - MER20 DNA MER1_type 0 219 2 317 267 115 0 chr4 40921974 40922139 -161406208 + L1P5 LINE L1 5254 5437 -714 249 238 99 16 chr4 40922163 40922327 -161406020 + L1ME LINE L1 5567 5751 -411 2307 116 0 0 chr4 40923011 40923322 -161405025 + AluSx SINE Alu 1 311 -1 25 31 0 0 chr4 40924329 40924361 -161403986 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr4 40924491 40924513 -161403834 + AT_rich Low_complexity Low_complexity 1 22 0 27 49 0 0 chr4 40924544 40924585 -161403762 + AT_rich Low_complexity Low_complexity 1 41 0 215 229 0 21 chr4 40925408 40925456 -161402891 + MER5A DNA MER1_type 1 47 -142 461 253 73 17 chr4 40927911 40928089 -161400258 + L2 LINE L2 1773 1960 -1354 1874 180 35 31 chr4 40928089 40928636 -161399711 - MLT2A2 LTR ERVL -2 552 1 1462 342 119 19 chr4 40928643 40928939 -161399408 + L2 LINE L2 1961 2226 -1087 1840 204 23 21 chr4 40928939 40929371 -161398976 + Tigger2a DNA MER2_type 1 433 -1 1462 342 119 19 chr4 40929371 40930257 -161398090 + L2 LINE L2 2226 3269 -44 281 406 0 0 chr4 40930315 40930438 -161397909 + L2 LINE L2 3150 3272 0 21 0 0 0 chr4 40930537 40930558 -161397789 + AT_rich Low_complexity Low_complexity 1 21 0 248 219 0 14 chr4 40930619 40930692 -161397655 + (TATATG)n Simple_repeat Simple_repeat 3 74 0 566 230 18 0 chr4 40930867 40930980 -161397367 - FLAM_A SINE Alu -16 126 12 1993 145 3 3 chr4 40931685 40931981 -161396366 + AluSx SINE Alu 1 296 -16 21 0 0 0 chr4 40932079 40932100 -161396247 + AT_rich Low_complexity Low_complexity 1 21 0 597 287 36 10 chr4 40934449 40934644 -161393703 + MLT1E LTR MaLR 41 240 -353 290 336 90 36 chr4 40935007 40935284 -161393063 + L2 LINE L2 3021 3312 -1 214 167 33 0 chr4 40935608 40935668 -161392679 + (TA)n Simple_repeat Simple_repeat 1 62 0 354 23 0 0 chr4 40936995 40937038 -161391309 + (TG)n Simple_repeat Simple_repeat 2 44 0 1179 184 19 99 chr4 40937069 40937434 -161390913 - MLT2C1 LTR ERVL -61 336 1 257 75 25 0 chr4 40937450 40937490 -161390857 + (TA)n Simple_repeat Simple_repeat 2 42 0 180 0 0 0 chr4 40937768 40937788 -161390559 + (TG)n Simple_repeat Simple_repeat 2 21 0 798 113 13 53 chr4 40937803 40937953 -161390394 - L1MB3 LINE L1 0 6183 6040 1487 153 0 66 chr4 40937959 40938247 -161390100 - AluJo SINE Alu -4 308 40 219 302 57 66 chr4 40938870 40938976 -161389371 - L2 LINE L2 -3 3310 3206 1568 148 11 4 chr4 40939104 40939368 -161388979 + L1PB3 LINE L1 5889 6154 0 1773 160 24 17 chr4 40939397 40939690 -161388657 + AluJb SINE Alu 1 295 -17 2881 151 12 2 chr4 40939700 40940209 -161388138 + L1MC1 LINE L1 5818 6331 -2 460 238 167 62 chr4 40941184 40941525 -161386822 + L1ME4a LINE L1 5743 6119 -2 2291 108 3 0 chr4 40942600 40942906 -161385441 + AluSx SINE Alu 1 307 -5 2349 93 3 6 chr4 40942947 40943258 -161385089 + AluSx SINE Alu 1 310 -2 22 0 0 0 chr4 40943564 40943586 -161384761 + AT_rich Low_complexity Low_complexity 1 22 0 1950 110 0 0 chr4 40943587 40943841 -161384506 - AluSx SINE Alu -18 294 41 326 266 43 11 chr4 40944637 40944731 -161383616 - MER91B DNA MER1_type -2 188 92 361 293 17 26 chr4 40944752 40944868 -161383479 - MER91B DNA MER1_type -61 129 15 2038 121 16 16 chr4 40944993 40945298 -161383049 + AluSx SINE Alu 1 305 -7 1110 167 28 9 chr4 40945321 40945536 -161382811 + MER20 DNA MER1_type 1 219 0 404 275 46 9 chr4 40945731 40945840 -161382507 - MER81 DNA DNA 0 114 2 1806 167 3 43 chr4 40946372 40946695 -161381652 - AluJb SINE Alu -2 310 1 180 323 32 16 chr4 40948684 40948746 -161379601 + MIR SINE MIR 85 147 -61 2108 60 0 0 chr4 40948832 40949082 -161379265 + AluY SINE Alu 62 311 0 770 260 22 6 chr4 40949761 40949942 -161378405 - MIR SINE MIR -77 185 2 2384 95 0 0 chr4 40950344 40950648 -161377699 + AluSq SINE Alu 1 304 -9 479 246 232 0 chr4 40950771 40950909 -161377438 - MER5A DNA MER1_type -5 184 15 2125 86 54 0 chr4 40951401 40951681 -161376666 - AluSp SINE Alu -18 295 1 334 292 119 38 chr4 40951682 40951867 -161376480 + HAL1 LINE L1 813 1012 -1495 710 174 0 0 chr4 40951916 40952025 -161376322 + FLAM_C SINE Alu 1 109 -34 381 262 90 0 chr4 40952055 40952200 -161376147 + HAL1 LINE L1 1624 1781 -726 481 244 54 18 chr4 40952389 40952557 -161375790 + MER104 DNA MER2_type 4 177 -3 364 169 39 0 chr4 40952585 40952662 -161375685 - MIR SINE MIR -15 247 168 296 242 32 0 chr4 40953058 40953153 -161375194 + HAL1 LINE L1 2239 2336 -171 2267 101 7 13 chr4 40953546 40953853 -161374494 + AluSx SINE Alu 1 305 -7 477 295 23 0 chr4 40954951 40955080 -161373267 + L2 LINE L2 3182 3313 0 226 353 57 71 chr4 40955578 40955861 -161372486 + L2 LINE L2 2989 3267 -5 659 298 69 5 chr4 40956657 40956875 -161371472 - MIR SINE MIR -24 238 7 792 116 23 23 chr4 40956919 40957048 -161371299 - FRAM SINE Alu -19 157 29 550 301 77 19 chr4 40957366 40957731 -161370616 - L1ME LINE L1 -361 5801 5416 579 254 11 38 chr4 40957742 40957927 -161370420 - LTR67 LTR ERVL -368 189 10 270 219 44 37 chr4 40957955 40958048 -161370299 - MER5A DNA MER1_type 0 189 87 203 228 70 18 chr4 40958065 40958122 -161370225 - L2 LINE L2 -4 3268 3209 1578 64 14 5 chr4 40958605 40958824 -161369523 - L1MA2 LINE L1 0 6304 6084 343 197 0 42 chr4 40959503 40959574 -161368773 - MER5A DNA MER1_type -110 79 12 799 299 33 5 chr4 40959694 40959905 -161368442 - MIR SINE MIR -12 250 34 21 0 0 0 chr4 40959926 40959947 -161368400 + AT_rich Low_complexity Low_complexity 1 21 0 2259 114 0 0 chr4 40960183 40960489 -161367858 - AluSx SINE Alu -4 308 3 248 221 13 0 chr4 40960543 40960620 -161367727 + (TA)n Simple_repeat Simple_repeat 2 79 0 486 312 78 55 chr4 40961348 40961835 -161366512 + L1M4 LINE L1 4736 5233 -913 28 29 0 0 chr4 40961946 40961981 -161366366 + AT_rich Low_complexity Low_complexity 1 35 0 25 0 0 0 chr4 40962486 40962511 -161365836 + AT_rich Low_complexity Low_complexity 1 25 0 4458 180 39 5 chr4 40963668 40964660 -161363687 + L1MB7 LINE L1 5155 6184 0 191 36 36 0 chr4 40968648 40968676 -161359671 + (TGAA)n Simple_repeat Simple_repeat 2 30 0 215 243 126 78 chr4 40968883 40968986 -161359361 + MIR3 SINE MIR 14 121 -87 269 36 54 36 chr4 40969135 40969191 -161359156 + (TTTTTA)n Simple_repeat Simple_repeat 4 60 0 667 146 49 24 chr4 40969200 40969323 -161359024 - FLAM_C SINE Alu -3 130 5 342 230 98 46 chr4 40969365 40969539 -161358808 + MLT1J LTR MaLR 1 183 -328 616 116 0 0 chr4 40969543 40969638 -161358709 + Ricksha DNA DNA 9 103 -1151 8700 140 16 8 chr4 40969650 40971072 -161357275 + Ricksha DNA DNA 240 1673 -1573 2096 139 3 10 chr4 40971072 40971375 -161356972 + AluSq SINE Alu 1 301 -12 7200 133 73 20 chr4 40971375 40972082 -161356265 + Ricksha DNA DNA 1762 2430 -827 1815 154 13 29 chr4 40972082 40972388 -161355959 - AluJb SINE Alu -11 301 1 7200 133 73 20 chr4 40972388 40973004 -161355343 + Ricksha DNA DNA 2430 3145 -112 2364 94 0 7 chr4 40973004 40973312 -161355035 - AluY SINE Alu -5 306 1 7200 133 73 20 chr4 40973312 40973421 -161354926 + Ricksha DNA DNA 3145 3247 -10 540 266 51 62 chr4 40973492 40973748 -161354599 + MLT1J LTR MaLR 231 483 -28 23 33 0 0 chr4 40973992 40974022 -161354325 + AT_rich Low_complexity Low_complexity 1 30 0 712 163 114 0 chr4 40974374 40974497 -161353850 - FRAM SINE Alu -23 153 17 43 20 0 0 chr4 40974711 40974761 -161353586 + AT_rich Low_complexity Low_complexity 1 50 0 2371 68 0 0 chr4 40974786 40975089 -161353258 + AluY SINE Alu 1 303 0 886 167 0 0 chr4 40975585 40975723 -161352624 + FLAM_C SINE Alu 1 138 -5 350 270 235 20 chr4 40975948 40976144 -161352203 - MIR SINE MIR -6 256 19 2252 256 57 25 chr4 40976639 40977709 -161350638 + L1M4 LINE L1 3425 4600 -1546 806 121 0 26 chr4 40977772 40977888 -161350459 + AluJb SINE Alu 14 126 -186 453 76 0 0 chr4 40977902 40977968 -161350379 + (GA)n Simple_repeat Simple_repeat 2 67 0 858 161 0 0 chr4 40978033 40978163 -161350184 + FLAM_C SINE Alu 11 140 -3 1010 244 44 4 chr4 40978552 40978781 -161349566 + MIR SINE MIR 6 243 -19 2077 117 4 0 chr4 40979106 40979416 -161348931 - AluSq SINE Alu 0 311 1 197 321 24 48 chr4 40979493 40979577 -161348770 - L2 LINE L2 -54 3218 3137 2495 64 0 0 chr4 40979635 40979932 -161348415 + AluY SINE Alu 1 297 -14 299 301 46 105 chr4 40979992 40980145 -161348202 - L2 LINE L2 -219 3053 2910 28 29 0 0 chr4 40980393 40980428 -161347919 + AT_rich Low_complexity Low_complexity 1 35 0 1627 188 40 13 chr4 40980499 40980803 -161347544 + AluJo SINE Alu 1 312 0 516 165 0 0 chr4 40980833 40980918 -161347429 + FLAM SINE Alu 44 128 -15 23 0 0 0 chr4 40980985 40981008 -161347339 + AT_rich Low_complexity Low_complexity 1 23 0 582 236 138 0 chr4 40981424 40981627 -161346720 + L2 LINE L2 1859 2089 -1225 296 232 0 0 chr4 40981756 40981825 -161346522 + L2 LINE L2 2403 2471 -843 336 289 70 14 chr4 40982600 40982742 -161345605 - L1M4 LINE L1 -1316 4830 4681 2402 55 3 3 chr4 40982754 40983044 -161345303 - AluSc SINE Alu -19 290 1 191 321 45 68 chr4 40983266 40983487 -161344860 + L2 LINE L2 2050 2265 -1049 298 304 98 27 chr4 40983634 40983733 -161344614 + L2 LINE L2 3194 3303 -10 1326 191 125 4 chr4 40983733 40984005 -161344342 + AluJb SINE Alu 1 305 -7 298 304 98 27 chr4 40984005 40984017 -161344330 + L2 LINE L2 3303 3313 0 836 159 0 0 chr4 40984354 40984480 -161343867 + FLAM_C SINE Alu 1 126 -17 814 201 113 80 chr4 40984825 40984899 -161343448 + MSTC LTR MaLR 1 71 -357 2157 114 0 14 chr4 40984899 40985196 -161343151 - AluSq SINE Alu -20 293 1 814 201 113 80 chr4 40985196 40985535 -161342812 + MSTC LTR MaLR 71 428 0 194 274 20 0 chr4 40986133 40986184 -161342163 - MER5B DNA MER1_type 0 178 127 288 263 22 73 chr4 40986207 40986344 -161342003 - MER5B DNA MER1_type 0 178 49 443 261 102 97 chr4 40986386 40986485 -161341862 - L1ME LINE L1 -308 5813 5716 2330 70 0 14 chr4 40986485 40986771 -161341576 - AluSg SINE Alu -28 282 1 443 261 102 97 chr4 40986771 40987054 -161341293 - L1ME LINE L1 -405 5716 5429 219 230 253 23 chr4 40987077 40987164 -161341183 - L2 LINE L2 0 3313 3207 585 217 108 18 chr4 40987352 40987518 -161340829 - MIR SINE MIR -21 241 61 1455 170 75 21 chr4 40987518 40987800 -161340547 + AluJb SINE Alu 1 297 -15 185 91 0 30 chr4 40987962 40987995 -161340352 + (GGAAA)n Simple_repeat Simple_repeat 4 35 0 1632 168 39 19 chr4 40989607 40989971 -161338376 + L1MB3 LINE L1 5806 6176 -7 1966 182 141 61 chr4 40990044 40990604 -161337743 + MER77 LTR ERV1 1 605 0 367 350 169 20 chr4 40990975 40991145 -161337202 + L2 LINE L2 2824 2967 -305 1051 153 81 34 chr4 40991145 40991354 -161336993 - MER20 DNA MER1_type 0 219 1 367 350 169 20 chr4 40991354 40991574 -161336773 + L2 LINE L2 2967 3272 0 1675 177 3 21 chr4 40991977 40992304 -161336043 - MLT1B LTR MaLR -5 385 65 371 303 67 8 chr4 40992353 40992472 -161335875 - L2 LINE L2 0 3272 3147 4776 129 54 31 chr4 40992521 40992788 -161335559 - MER4D LTR ERV1 0 903 644 1602 152 69 10 chr4 40992788 40993078 -161335269 + AluJb SINE Alu 1 307 -5 4776 129 54 31 chr4 40993078 40993675 -161334672 - MER4D LTR ERV1 -259 644 19 2121 130 3 7 chr4 40993675 40993982 -161334365 - AluSx SINE Alu -6 306 1 847 117 88 0 chr4 40993983 40994120 -161334227 + AluSg/x SINE Alu 140 288 -24 247 331 55 55 chr4 40994184 40994329 -161334018 - L2 LINE L2 -182 3090 2946 325 177 9 43 chr4 40994425 40994541 -161333806 - MER41B LTR ERV1 -12 597 403 401 136 0 0 chr4 40994541 40994607 -161333740 + Alu SINE Alu 242 307 -5 2164 150 5 30 chr4 40994607 40995013 -161333334 - MER41B LTR ERV1 -127 508 113 207 69 0 0 chr4 40995230 40995259 -161333088 + (A)n Simple_repeat Simple_repeat 1 29 0 23 33 0 0 chr4 40996152 40996182 -161332165 + AT_rich Low_complexity Low_complexity 1 30 0 195 42 0 0 chr4 40996549 40996573 -161331774 + (TTTA)n Simple_repeat Simple_repeat 4 27 0 392 358 68 27 chr4 40996578 40996726 -161331621 - L2 LINE L2 -15 3257 3104 263 243 43 0 chr4 40996755 40996825 -161331522 + MIR3 SINE MIR 120 192 -16 2076 97 4 4 chr4 40997233 40997512 -161330835 + AluSp SINE Alu 30 308 -5 234 0 0 0 chr4 40997824 40997850 -161330497 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2041 126 16 19 chr4 40999245 40999555 -161328792 - AluSx SINE Alu -3 309 1 22 35 0 0 chr4 40999707 40999736 -161328611 + AT_rich Low_complexity Low_complexity 1 29 0 249 239 159 34 chr4 40999862 41000038 -161328309 + L1M4 LINE L1 4080 4277 -1869 1611 184 16 32 chr4 41000057 41000372 -161327975 + AluJb SINE Alu 1 310 -2 28 29 0 0 chr4 41000481 41000516 -161327831 + AT_rich Low_complexity Low_complexity 1 35 0 252 216 32 56 chr4 41000576 41000701 -161327646 - L1MC4 LINE L1 -19 8023 7902 1922 133 4 4 chr4 41001086 41001365 -161326982 + AluSx SINE Alu 1 279 -33 3597 173 38 25 chr4 41001413 41002182 -161326165 - L1MB8 LINE L1 -59 6119 5341 505 167 21 0 chr4 41002194 41002290 -161326057 + MIR SINE MIR 164 261 -1 364 293 93 76 chr4 41002308 41002700 -161325647 - L1M4 LINE L1 -3546 2600 2197 1902 126 0 66 chr4 41002700 41003018 -161325329 - AluJb SINE Alu -5 307 11 364 293 93 76 chr4 41003018 41003086 -161325261 - L1M4 LINE L1 -3949 2197 2132 831 229 48 27 chr4 41003336 41003637 -161324710 - L1ME LINE L1 -574 5588 5257 1971 145 26 3 chr4 41003676 41003979 -161324368 + AluSx SINE Alu 1 310 -2 243 88 0 0 chr4 41003979 41004013 -161324334 + (GGGGA)n Simple_repeat Simple_repeat 4 37 0 261 265 81 42 chr4 41004013 41004273 -161324074 - L1ME LINE L1 -917 5229 4960 1080 128 12 18 chr4 41004273 41004437 -161323910 - FRAM SINE Alu -10 166 4 244 183 113 78 chr4 41004451 41004566 -161323781 - L1ME LINE L1 -1249 4897 4779 317 213 0 0 chr4 41004645 41004706 -161323641 + MER58 DNA MER1_type 2354 2414 -6 4908 140 34 12 chr4 41005201 41006106 -161322241 + L1MA8 LINE L1 5364 6288 -3 483 275 80 56 chr4 41006122 41006233 -161322114 + L1MC/D LINE L1 5173 5280 -1007 2280 108 3 3 chr4 41006233 41006540 -161321807 + AluSq SINE Alu 1 307 -6 483 275 80 56 chr4 41006540 41006779 -161321568 + L1MC/D LINE L1 5280 5539 -748 763 235 18 12 chr4 41006925 41007091 -161321256 - MIR SINE MIR -95 167 1 1773 124 55 68 chr4 41007158 41007466 -161320881 + THE1C LTR MaLR 1 305 -70 2190 77 6 49 chr4 41007466 41007791 -161320556 - AluY SINE Alu 0 311 1 1773 124 55 68 chr4 41007791 41007862 -161320485 + THE1C LTR MaLR 305 375 0 21 57 0 0 chr4 41008089 41008124 -161320223 + AT_rich Low_complexity Low_complexity 1 35 0 25 65 0 0 chr4 41008738 41008784 -161319563 + AT_rich Low_complexity Low_complexity 1 46 0 21 0 0 0 chr4 41009528 41009549 -161318798 + AT_rich Low_complexity Low_complexity 1 21 0 2397 81 7 0 chr4 41009662 41009969 -161318378 - AluSp SINE Alu -3 310 2 3869 173 73 30 chr4 41010661 41010934 -161317413 + L1MC3 LINE L1 6817 7077 -708 2540 63 0 0 chr4 41010934 41011234 -161317113 + AluY SINE Alu 1 300 -11 3869 173 73 30 chr4 41011234 41011785 -161316562 + L1MC3 LINE L1 7077 7676 -109 402 125 28 28 chr4 41011785 41011853 -161316494 + L1MC2 LINE L1 6259 6330 -14 254 233 178 11 chr4 41011939 41012029 -161316318 + L2 LINE L2 3209 3313 0 185 397 0 0 chr4 41012177 41012255 -161316092 - L2 LINE L2 -7 3306 3229 2075 121 14 0 chr4 41012258 41012548 -161315799 + AluSx SINE Alu 1 294 -18 2079 137 0 13 chr4 41013113 41013426 -161314921 - AluJb SINE Alu -3 309 1 436 333 140 22 chr4 41013426 41013741 -161314606 + L2 LINE L2 2626 2977 -337 297 254 0 0 chr4 41013880 41013939 -161314408 + MER82 DNA MER2_type 1 59 -594 1420 174 157 53 chr4 41014223 41014531 -161313816 + MSTD LTR MaLR 1 352 -44 1967 142 28 0 chr4 41014531 41014819 -161313528 + AluSx SINE Alu 1 296 -16 1420 174 157 53 chr4 41014819 41014867 -161313480 + MSTD LTR MaLR 352 394 -2 872 163 0 15 chr4 41014947 41015082 -161313265 + FLAM_C SINE Alu 1 133 0 1085 0 0 8 chr4 41015191 41015317 -161313030 + (GAA)n Simple_repeat Simple_repeat 2 126 0 771 184 77 0 chr4 41016456 41016624 -161311723 - MER3 DNA MER1_type -28 181 1 684 120 0 0 chr4 41016682 41016782 -161311565 + L1MB3 LINE L1 6077 6176 -7 216 0 0 0 chr4 41017767 41017791 -161310556 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1315 139 0 5 chr4 41017797 41017984 -161310363 - AluJb SINE Alu -42 270 85 2274 78 7 0 chr4 41018965 41019274 -161309073 + AluSp SINE Alu 1 311 0 285 152 45 15 chr4 41019277 41019343 -161309004 + HAL1 LINE L1 1572 1639 -868 281 296 50 22 chr4 41019509 41019688 -161308659 + L1 LINE L1 2669 2852 -3294 1709 171 3 18 chr4 41019722 41020008 -161308339 + AluJo SINE Alu 1 282 -30 225 0 0 0 chr4 41020012 41020037 -161308310 + (CAA)n Simple_repeat Simple_repeat 2 26 0 26 64 0 0 chr4 41020130 41020177 -161308170 + AT_rich Low_complexity Low_complexity 1 47 0 232 226 0 97 chr4 41020306 41020399 -161307948 - L2 LINE L2 -9 3263 3180 1778 158 0 50 chr4 41021994 41022297 -161306050 + AluJo SINE Alu 3 290 -22 1815 215 42 58 chr4 41022489 41023010 -161305337 - L1ME1 LINE L1 -5 6161 5649 546 202 0 0 chr4 41023071 41023170 -161305177 - AluJo SINE Alu -83 229 131 1824 192 92 16 chr4 41023172 41023834 -161304513 - L1ME1 LINE L1 -510 5656 4943 816 186 12 12 chr4 41023881 41024042 -161304305 - L1ME1 LINE L1 -1191 4955 4795 25 75 0 0 chr4 41024050 41024103 -161304244 + AT_rich Low_complexity Low_complexity 1 53 0 2349 155 11 8 chr4 41024105 41024486 -161303861 + MER57A LTR ERV1 22 403 0 1852 218 37 7 chr4 41024489 41024943 -161303404 - L1ME1 LINE L1 -1358 4788 4321 724 147 0 0 chr4 41024944 41025046 -161303301 - AluJo SINE Alu -182 130 29 551 234 17 116 chr4 41025046 41025325 -161303022 - L1ME1 LINE L1 -1819 4327 4046 5917 36 0 13 chr4 41025328 41026015 -161302332 - SVA Other Other 0 1386 709 203 257 162 0 chr4 41026220 41026294 -161302053 + L2 LINE L2 2913 2998 -274 2596 60 0 0 chr4 41026327 41026627 -161301720 + AluSx SINE Alu 1 300 -12 1235 131 0 0 chr4 41026627 41026802 -161301545 + AluSg/x SINE Alu 134 308 -4 334 280 73 86 chr4 41026804 41027036 -161301311 + L2 LINE L2 3044 3272 0 2958 229 99 32 chr4 41027075 41028092 -161300255 - L1ME1 LINE L1 -2102 4044 2960 385 268 86 5 chr4 41028098 41028276 -161300071 + L2 LINE L2 996 1286 -2028 969 167 52 23 chr4 41028276 41028450 -161299897 - MER5A DNA MER1_type 0 189 11 678 266 119 52 chr4 41028426 41028948 -161299399 + L2 LINE L2 1253 3184 -129 * 276 206 40 119 chr4 41029286 41029412 -161298935 - MIR SINE MIR -13 249 134 305 294 125 15 chr4 41029995 41030131 -161298216 - L1M4 LINE L1 -1957 4189 4039 1946 91 15 8 chr4 41030172 41030435 -161297912 + AluSx SINE Alu 41 305 -7 4514 177 30 94 chr4 41031608 41032700 -161295647 + L1MC2 LINE L1 5192 6199 -145 2360 61 0 0 chr4 41032700 41033006 -161295341 - AluY SINE Alu 0 309 4 4514 177 30 94 chr4 41033006 41033144 -161295203 + L1MC2 LINE L1 6199 6344 0 1783 212 80 61 chr4 41033157 41033219 -161295128 + L1ME LINE L1 4832 4891 -1275 2360 92 0 3 chr4 41033219 41033523 -161294824 - AluSq SINE Alu -6 307 5 1783 212 80 61 chr4 41033523 41033577 -161294770 + L1ME LINE L1 4891 4942 -1224 225 0 0 0 chr4 41033577 41033602 -161294745 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 1783 212 80 61 chr4 41033602 41033740 -161294607 + L1ME LINE L1 4942 5076 -1090 1580 188 0 20 chr4 41033740 41034032 -161294315 + AluJb SINE Alu 9 294 -18 1783 212 80 61 chr4 41034032 41034743 -161293604 + L1ME LINE L1 5076 5811 -355 897 341 79 30 chr4 41034753 41035578 -161292769 - MERVL LTR ERVL -897 4588 3724 256 282 86 8 chr4 41035708 41035825 -161292522 - MERVL LTR ERVL -1975 3510 3385 972 274 38 34 chr4 41036299 41036625 -161291722 - LTR16A LTR ERVL -55 395 58 300 283 53 41 chr4 41036815 41037301 -161291046 - L1MDa LINE L1 -851 1639 897 22 35 0 0 chr4 41037439 41037468 -161290879 + AT_rich Low_complexity Low_complexity 1 29 0 530 172 0 0 chr4 41037468 41037561 -161290786 - L1MA5A LINE L1 0 6297 6205 27 0 0 0 chr4 41039465 41039492 -161288855 + AT_rich Low_complexity Low_complexity 1 27 0 348 279 27 95 chr4 41039494 41039641 -161288706 - MIR SINE MIR -120 142 6 2464 86 0 0 chr4 41039656 41039960 -161288387 - AluY SINE Alu -7 304 1 186 103 0 0 chr4 41040395 41040424 -161287923 + (GA)n Simple_repeat Simple_repeat 1 29 0 806 11 0 0 chr4 41044955 41045045 -161283302 + 5S rRNA rRNA 1 90 -31 2354 81 0 7 chr4 41045237 41045544 -161282803 + AluSc SINE Alu 1 305 -4 2309 77 7 10 chr4 41045912 41046212 -161282135 - AluSx SINE Alu -13 299 1 21 0 0 0 chr4 41046418 41046439 -161281908 + AT_rich Low_complexity Low_complexity 1 21 0 454 106 106 0 chr4 41046447 41046513 -161281834 + AluS SINE Alu 4 76 -237 2152 77 4 7 chr4 41046514 41046788 -161281559 - AluSq SINE Alu -40 273 1 2049 114 3 50 chr4 41046808 41047125 -161281222 - AluSp SINE Alu -11 302 1 1450 181 12 116 chr4 41047507 41047705 -161280642 - AluJo SINE Alu 0 302 85 2013 142 0 26 chr4 41047705 41048015 -161280332 - AluSx SINE Alu -10 302 1 2334 83 0 3 chr4 41048018 41048319 -161280028 - AluSg SINE Alu -10 300 1 1450 181 12 116 chr4 41048319 41048453 -161279894 - AluJo SINE Alu -219 83 1 1602 163 0 78 chr4 41048827 41048949 -161279398 + AluJb SINE Alu 1 131 -181 2405 84 3 0 chr4 41048949 41049245 -161279102 - AluSp SINE Alu -16 297 1 1602 163 0 78 chr4 41049245 41049454 -161278893 + AluJb SINE Alu 131 306 -6 2007 100 0 4 chr4 41049558 41049828 -161278519 + AluSq SINE Alu 35 303 -10 368 331 47 0 chr4 41049840 41049967 -161278380 + HERVL68 LTR ERVL 1084 1216 -4314 406 56 14 113 chr4 41050011 41050082 -161278265 + Alu SINE Alu 237 300 -11 482 226 49 0 chr4 41050148 41050250 -161278097 + HERVL68 LTR ERVL 3510 3616 -1914 257 143 24 0 chr4 41050244 41050286 -161278061 + HERVL68 LTR ERVL 3765 3807 -1723 * 593 341 70 24 chr4 41050561 41050930 -161277417 + HERVL68 LTR ERVL 2490 2875 -2655 2197 92 0 3 chr4 41050946 41051260 -161277087 - AluSc SINE Alu 0 313 1 1422 177 106 40 chr4 41051266 41051588 -161276759 - MLT1D LTR MaLR 0 505 163 180 0 0 0 chr4 41051755 41051775 -161276572 + (TG)n Simple_repeat Simple_repeat 2 21 0 1406 120 0 14 chr4 41051915 41052123 -161276224 - AluSq SINE Alu -5 308 104 1407 127 0 14 chr4 41052132 41052344 -161276003 - AluSg/x SINE Alu 0 310 102 2138 123 16 7 chr4 41052349 41052658 -161275689 - AluSx SINE Alu 0 312 1 288 163 0 0 chr4 41052673 41052716 -161275631 - MER57A LTR ERV1 -66 337 295 2069 128 3 0 chr4 41053181 41053469 -161274878 - AluSx SINE Alu -23 289 1 2232 114 0 7 chr4 41053603 41053910 -161274437 + AluSq SINE Alu 1 305 -8 2255 85 10 3 chr4 41053910 41054217 -161274130 + AluY SINE Alu 1 309 -2 391 200 38 19 chr4 41054222 41054327 -161274020 + HERVL68 LTR ERVL 701 807 -2230 243 0 0 0 chr4 41054441 41054468 -161273879 + (A)n Simple_repeat Simple_repeat 1 27 0 696 200 13 13 chr4 41056357 41056507 -161271840 + HERVL68 LTR ERVL 770 919 -2118 2100 127 13 0 chr4 41056519 41056818 -161271529 + AluSg SINE Alu 1 303 -7 2277 101 0 3 chr4 41056830 41057137 -161271210 + AluSg SINE Alu 1 306 -4 2467 81 0 3 chr4 41057189 41057497 -161270850 + AluSg1 SINE Alu 1 307 -2 1687 159 17 23 chr4 41057528 41057830 -161270517 + AluJb SINE Alu 1 300 -12 1975 164 38 50 chr4 41057830 41058097 -161270250 + HERVL68 LTR ERVL 929 1191 -1846 2134 133 0 0 chr4 41058097 41058399 -161269948 + AluSx SINE Alu 1 302 -10 1975 164 38 50 chr4 41058399 41058552 -161269795 + HERVL68 LTR ERVL 1191 1344 -1693 2610 124 24 66 chr4 41058552 41058603 -161269744 - MER57B LTR ERV1 0 434 382 2487 64 0 0 chr4 41058603 41058898 -161269449 + AluY SINE Alu 1 295 -16 2610 124 24 66 chr4 41058898 41059299 -161269048 - MER57B LTR ERV1 -52 382 1 1595 81 124 4 chr4 41059303 41059537 -161268810 - MER57B-int LTR ERV1 -4 7533 7272 619 111 30 104 chr4 41059537 41059583 -161268764 - LTR54B LTR ERV1 -371 127 79 2493 59 9 31 chr4 41059583 41059903 -161268444 - AluSp SINE Alu 0 313 1 619 111 30 104 chr4 41059903 41059991 -161268356 - LTR54B LTR ERV1 -419 79 3 2814 94 0 0 chr4 41059991 41060352 -161267995 - MER57B-int LTR ERV1 -389 7148 6788 2493 74 7 0 chr4 41060357 41060666 -161267681 + AluY SINE Alu 1 311 0 619 94 0 62 chr4 41060674 41060770 -161267577 + AluS SINE Alu 2 91 -222 307 93 0 0 chr4 41060770 41060813 -161267534 - Alu SINE Alu -258 43 1 939 111 24 83 chr4 41060813 41060996 -161267351 - MER57-int LTR ERV1 -4402 1451 1259 2254 116 0 0 chr4 41060996 41061297 -161267050 + AluSx SINE Alu 1 301 -11 939 111 24 83 chr4 41061297 41061417 -161266930 - MER57-int LTR ERV1 -4594 1259 632 2736 179 48 25 chr4 41061441 41061867 -161266480 + HERVL68 LTR ERVL 1377 1821 -1216 4257 77 9 0 chr4 41061867 41062416 -161265931 - MER41A LTR ERV1 0 554 1 2736 179 48 25 chr4 41062416 41062553 -161265794 + HERVL68 LTR ERVL 1821 1953 -1084 2431 85 3 0 chr4 41062554 41062859 -161265488 - AluSp SINE Alu -7 306 1 735 239 117 9 chr4 41063434 41063656 -161264691 + REP3 LTR ERV 290 535 -27 2179 132 30 28 chr4 41063661 41064024 -161264323 + THE1B LTR MaLR 1 364 0 6546 95 3 0 chr4 41064025 41064889 -161263458 + THE1B-int LTR MaLR 2 868 -712 637 228 7 0 chr4 41064893 41065029 -161263318 + L1P LINE L1 4187 4323 -1823 1907 141 3 3 chr4 41065036 41065340 -161263007 + AluSx SINE Alu 3 306 -6 273 162 4 70 chr4 41065351 41065416 -161262931 + AluJo SINE Alu 83 134 -168 1476 85 39 61 chr4 41065435 41065644 -161262703 + L1P4 LINE L1 5128 5331 -834 2297 116 0 13 chr4 41065644 41065954 -161262393 + AluSq SINE Alu 1 306 -7 1476 85 39 61 chr4 41065954 41066122 -161262225 + L1P4 LINE L1 5331 5501 -664 1953 125 18 4 chr4 41066122 41066403 -161261944 + AluSq SINE Alu 1 285 -28 477 0 0 0 chr4 41066403 41066456 -161261891 + (CTAAA)n Simple_repeat Simple_repeat 3 55 0 1969 106 8 0 chr4 41066467 41066731 -161261616 + AluSx SINE Alu 1 266 -46 1397 128 0 137 chr4 41066734 41066891 -161261456 - AluJb SINE Alu -40 272 178 1437 117 147 71 chr4 41066891 41067157 -161261190 - AluSx SINE Alu -26 286 1 1397 128 0 137 chr4 41067157 41067312 -161261035 - AluJb SINE Alu -134 178 3 2049 133 0 0 chr4 41067359 41067645 -161260702 - AluSx SINE Alu -26 286 1 659 156 57 8 chr4 41067998 41068120 -161260227 + FLAM_C SINE Alu 12 139 -4 2227 119 0 6 chr4 41068151 41068462 -161259885 - AluSc SINE Alu 0 309 1 2396 70 0 0 chr4 41068467 41068775 -161259572 - AluY SINE Alu 0 308 1 2188 126 0 0 chr4 41068790 41069091 -161259256 - AluSx SINE Alu -11 301 1 1762 128 12 0 chr4 41069107 41069349 -161258998 - AluSg SINE Alu -16 294 50 736 218 49 71 chr4 41069349 41069391 -161258956 - L1MDa LINE L1 -4380 2160 2119 2142 118 3 3 chr4 41069391 41069695 -161258652 + AluSc SINE Alu 1 304 -5 736 218 49 71 chr4 41069695 41069960 -161258387 - L1MDa LINE L1 -4421 2119 1860 727 154 0 70 chr4 41069999 41070142 -161258205 - FLAM_C SINE Alu 0 133 1 1692 100 0 9 chr4 41070237 41070466 -161257881 - AluSg/x SINE Alu -4 306 80 718 95 0 0 chr4 41070466 41070561 -161257786 - AluSg SINE Alu -188 122 28 244 259 120 0 chr4 41070576 41070684 -161257663 - L1MDa LINE L1 -4782 1758 1638 244 195 0 0 chr4 41070695 41070736 -161257611 - MER57A LTR ERV1 -67 336 296 509 214 44 87 chr4 41070736 41070942 -161257405 - L1MDa LINE L1 -4873 1667 1471 334 175 0 0 chr4 41070956 41071019 -161257328 - AluS SINE Alu -7 295 233 875 129 0 0 chr4 41071178 41071302 -161257045 + AluSg/x SINE Alu 173 296 -14 1985 147 7 3 chr4 41071775 41072082 -161256265 - AluSx SINE Alu -4 308 1 857 168 0 0 chr4 41072192 41072323 -161256024 - FLAM_C SINE Alu -2 131 1 2336 103 0 3 chr4 41072520 41072820 -161255527 + AluSc SINE Alu 2 300 -9 681 197 15 29 chr4 41072832 41072969 -161255378 - AluJo SINE Alu -176 136 2 216 111 0 0 chr4 41073240 41073276 -161255071 + (TCC)n Simple_repeat Simple_repeat 3 38 0 233 186 314 0 chr4 41073490 41073592 -161254755 - Charlie1 DNA MER1_type -3 2758 2625 1472 171 75 0 chr4 41073592 41073873 -161254474 + AluJo SINE Alu 1 302 0 188 135 27 0 chr4 41073877 41073914 -161254433 + (TTATA)n Simple_repeat Simple_repeat 1 38 0 2073 113 13 17 chr4 41073914 41074077 -161254270 - AluSx SINE Alu -13 299 136 2271 106 13 0 chr4 41074077 41074379 -161253968 - AluSp SINE Alu -6 307 2 2073 113 13 17 chr4 41074379 41074515 -161253832 - AluSx SINE Alu -176 136 1 2365 43 4 7 chr4 41074537 41074817 -161253530 - AluY SINE Alu -7 304 26 234 0 0 0 chr4 41075023 41075049 -161253298 + (TG)n Simple_repeat Simple_repeat 2 27 0 275 80 0 100 chr4 41075064 41075114 -161253233 - AluY SINE Alu -256 46 2 2587 42 13 0 chr4 41075446 41075753 -161252594 + AluY SINE Alu 1 311 0 940 211 0 0 chr4 41075758 41075919 -161252428 + AluJb SINE Alu 129 289 -23 234 0 0 0 chr4 41075922 41075948 -161252399 + (CCAA)n Simple_repeat Simple_repeat 2 27 0 583 248 101 50 chr4 41075951 41075985 -161252362 - Charlie1 DNA MER1_type -2517 244 213 2288 81 27 3 chr4 41075985 41076282 -161252065 + AluY SINE Alu 1 304 -7 583 248 101 50 chr4 41076282 41076445 -161251902 - Charlie1 DNA MER1_type -2548 213 37 1813 138 41 14 chr4 41076615 41076934 -161251413 + AluSx SINE Alu 1 312 0 2491 74 3 0 chr4 41076945 41077244 -161251103 + AluSp SINE Alu 1 300 -13 183 42 0 0 chr4 41077247 41077271 -161251076 + (TTA)n Simple_repeat Simple_repeat 1 24 0 23 0 0 0 chr4 41077733 41077756 -161250591 + AT_rich Low_complexity Low_complexity 1 23 0 1973 123 21 0 chr4 41077884 41078169 -161250178 - AluSp SINE Alu -22 291 1 1409 141 0 35 chr4 41078320 41078547 -161249800 + AluJo SINE Alu 91 309 -3 2326 107 3 0 chr4 41078555 41078864 -161249483 + AluSq SINE Alu 1 310 -3 2256 122 0 0 chr4 41079009 41079304 -161249043 + AluSg SINE Alu 1 295 -15 909 251 67 110 chr4 41079605 41080014 -161248333 - MLT1H LTR MaLR -11 538 154 1929 147 0 0 chr4 41080014 41080300 -161248047 + AluJb SINE Alu 1 286 -26 909 251 67 110 chr4 41080300 41080399 -161247948 - MLT1H LTR MaLR -395 154 52 2700 20 0 0 chr4 41080902 41081196 -161247151 + AluY SINE Alu 1 294 -17 1611 118 0 0 chr4 41081296 41081507 -161246840 - AluSx SINE Alu -101 211 1 4417 185 23 26 chr4 41081513 41081605 -161246742 - L1MB8 LINE L1 -6 6172 6081 2296 106 3 13 chr4 41081605 41081917 -161246430 + AluSx SINE Alu 1 309 -3 4417 185 23 26 chr4 41081917 41082867 -161245480 - L1MB8 LINE L1 -97 6081 5136 266 353 119 22 chr4 41083029 41083517 -161244830 - L2 LINE L2 -476 2838 2304 1231 240 148 5 chr4 41083519 41083890 -161244457 - LTR16A LTR ERVL 0 450 27 764 275 57 13 chr4 41084096 41084325 -161244022 - MLT1L LTR MaLR -9 606 368 1449 188 107 61 chr4 41084415 41084808 -161243539 - MER21B LTR ERV1 -69 794 384 1002 169 28 0 chr4 41085910 41086087 -161242260 - MER105 DNA DNA -2 202 21 2037 188 59 14 chr4 41086180 41086276 -161242071 - MER74C LTR ERVL -16 444 354 2928 127 2 2 chr4 41086276 41086701 -161241646 + MER61B LTR ERV1 1 425 0 2037 188 59 14 chr4 41086701 41087025 -161241322 - MER74C LTR ERVL -106 354 5 1666 211 13 40 chr4 41087203 41087583 -161240764 - MLT1A2 LTR MaLR -4 370 1 227 167 56 111 chr4 41087648 41087670 -161240677 + L2 LINE L2 1910 1932 -1382 2353 71 0 83 chr4 41087670 41088009 -161240338 - AluY SINE Alu 0 311 1 227 167 56 111 chr4 41088009 41088058 -161240289 + L2 LINE L2 1932 1977 -1337 180 0 0 0 chr4 41088172 41088192 -161240155 + (TAA)n Simple_repeat Simple_repeat 2 21 0 2184 113 3 0 chr4 41088274 41088565 -161239782 - AluSg SINE Alu -5 305 14 1478 251 38 53 chr4 41088590 41089173 -161239174 + MER68 LTR ERV1 1 535 -27 1097 210 56 68 chr4 41089405 41089801 -161238546 - LTR37B LTR ERV1 -77 391 1 305 204 0 0 chr4 41090209 41090263 -161238084 + MLT1A1 LTR MaLR 5 58 -307 3505 94 41 8 chr4 41090271 41090779 -161237568 + MER11A LTR ERVK 1 525 -741 1697 171 0 52 chr4 41090968 41091278 -161237069 - AluJo SINE Alu -8 304 11 240 330 37 53 chr4 41091702 41092023 -161236324 - L2 LINE L2 -710 2604 2289 1664 139 52 8 chr4 41092404 41092671 -161235676 + AluSp SINE Alu 21 299 -14 2257 84 35 0 chr4 41093115 41093402 -161234945 - AluSp SINE Alu -16 297 1 203 183 49 24 chr4 41093879 41093961 -161234386 + T-rich Low_complexity Low_complexity 2 85 0 367 227 10 10 chr4 41094953 41095050 -161233297 + MIR SINE MIR 112 208 -54 318 308 10 19 chr4 41095448 41095552 -161232795 + CT-rich Low_complexity Low_complexity 4 106 0 1993 120 49 37 chr4 41095564 41095889 -161232458 + THE1B LTR MaLR 1 329 -35 186 43 0 0 chr4 41095902 41095925 -161232422 + (TTCC)n Simple_repeat Simple_repeat 3 25 0 203 0 37 0 chr4 41096086 41096113 -161232234 + (GA)n Simple_repeat Simple_repeat 1 28 0 262 265 0 12 chr4 41096639 41096722 -161231625 + GA-rich Low_complexity Low_complexity 1 82 0 458 75 0 0 chr4 41096726 41096793 -161231554 + Alu SINE Alu 244 310 0 949 240 14 5 chr4 41097734 41097951 -161230396 + MER20 DNA MER1_type 1 219 0 43409 36 23 2 chr4 41098433 41104459 -161223888 - L1PA2 LINE L1 -1 6154 1 6611 127 57 11 chr4 41105566 41106544 -161221803 + L1M1 LINE L1 1814 2852 -4713 2080 126 7 7 chr4 41106544 41106846 -161221501 + AluSg SINE Alu 1 302 -8 6611 127 57 11 chr4 41106846 41106984 -161221363 + L1M1 LINE L1 2852 2982 -4583 6296 166 38 20 chr4 41106981 41108242 -161220105 + L1M1 LINE L1 5418 6734 -990 * 1833 50 0 0 chr4 41108242 41108464 -161219883 - L1PA5 LINE L1 -2 6152 5931 6296 166 38 20 chr4 41108464 41108962 -161219385 + L1M1 LINE L1 6734 7221 -503 995 123 19 0 chr4 41109079 41109234 -161219113 - MER4B LTR ERV1 -452 158 1 213 205 0 0 chr4 41111283 41111322 -161217025 + (TTCA)n Simple_repeat Simple_repeat 1 39 0 1813 175 49 17 chr4 41112613 41113238 -161215109 + MER44D DNA MER2_type 2 705 0 341 267 77 62 chr4 41113280 41113475 -161214872 - HAL1 LINE L1 -4 2503 2306 512 117 0 68 chr4 41113630 41113645 -161214702 + L1P5 LINE L1 5693 5707 -449 962 206 0 0 chr4 41113645 41113829 -161214518 - L1PB4 LINE L1 0 6156 5973 512 117 0 68 chr4 41113829 41113916 -161214431 + L1P5 LINE L1 5707 5788 -368 223 289 26 26 chr4 41114626 41114702 -161213645 - L2 LINE L2 0 3313 3238 216 345 103 14 chr4 41115786 41115931 -161212416 - L2 LINE L2 -578 2736 2579 870 224 8 77 chr4 41116037 41116283 -161212064 + AluJo SINE Alu 1 229 -83 250 100 0 0 chr4 41116285 41116325 -161212022 + FLAM_A SINE Alu 20 59 -73 597 216 0 0 chr4 41116325 41116441 -161211906 + AluJb SINE Alu 158 273 -39 2025 132 27 0 chr4 41116761 41116935 -161211412 - AluSx SINE Alu -8 304 117 279 0 0 0 chr4 41116935 41116966 -161211381 + (TG)n Simple_repeat Simple_repeat 2 32 0 2025 132 27 0 chr4 41116966 41117086 -161211261 - AluSx SINE Alu -195 117 2 272 320 87 60 chr4 41117260 41117629 -161210718 + L2 LINE L2 2935 3313 0 3659 62 2 8 chr4 41117725 41118208 -161210139 + L1PA8 LINE L1 5693 6172 0 258 290 0 11 chr4 41118270 41118363 -161209984 - MIR SINE MIR -24 238 147 2239 121 0 0 chr4 41120484 41120782 -161207565 - AluSg SINE Alu -12 298 1 219 214 0 0 chr4 41120924 41120994 -161207353 + (TGAA)n Simple_repeat Simple_repeat 4 73 0 2156 121 7 0 chr4 41121105 41121412 -161206935 + AluY SINE Alu 3 311 0 6863 198 26 8 chr4 41121440 41122438 -161205909 - L1PA16 LINE L1 -10 6156 5177 2472 136 69 10 chr4 41122438 41122842 -161205505 - MSTA LTR MaLR 0 428 1 6863 198 26 8 chr4 41122842 41124471 -161203876 - L1PA16 LINE L1 -989 5177 3477 8325 175 13 8 chr4 41124487 41127163 -161201184 - L1PB1 LINE L1 -1 6853 4167 2871 221 20 1 chr4 41127162 41127923 -161200424 + L1 LINE L1 2698 3472 -2674 * 3116 271 26 14 chr4 41127920 41129359 -161198988 - L1PB1 LINE L1 -2662 4187 2731 3010 149 22 2 chr4 41129374 41129916 -161198431 + L1MB4 LINE L1 5628 6180 0 2356 103 0 0 chr4 41130297 41130597 -161197750 + AluSx SINE Alu 2 301 -11 4314 41 9 0 chr4 41130785 41131317 -161197030 + L1PA7 LINE L1 5618 6154 0 394 260 0 20 chr4 41131416 41131516 -161196831 - MLT1K LTR MaLR -329 259 162 1182 155 38 110 chr4 41132239 41132503 -161195844 + AluJo SINE Alu 1 245 -67 216 143 48 0 chr4 41132555 41132565 -161195782 + (TA)n Simple_repeat Simple_repeat 1 9 -57 2267 95 0 20 chr4 41132565 41132861 -161195486 + AluSc SINE Alu 1 290 -19 216 143 48 0 chr4 41132861 41132913 -161195434 + (TA)n Simple_repeat Simple_repeat 9 66 0 2581 52 0 0 chr4 41133138 41133448 -161194899 - AluY SINE Alu -1 310 1 283 285 46 69 chr4 41134045 41134141 -161194206 + L2 LINE L2 3146 3240 -32 2279 75 0 3 chr4 41134141 41134446 -161193901 - AluY SINE Alu -7 304 1 283 285 46 69 chr4 41134446 41134479 -161193868 + L2 LINE L2 3240 3272 0 1733 143 13 70 chr4 41134791 41135105 -161193242 + AluSx SINE Alu 1 296 -16 2307 108 0 0 chr4 41135530 41135835 -161192512 + AluSx SINE Alu 1 305 -7 2267 105 0 3 chr4 41136780 41137086 -161191261 - AluSx SINE Alu -7 305 1 484 101 51 0 chr4 41137086 41137165 -161191182 - L1M1 LINE L1 -5133 2432 2350 2821 41 8 0 chr4 41137169 41137533 -161190814 + L1P2 LINE L1 5374 5740 -414 212 352 0 0 chr4 41137633 41137687 -161190660 + (CGTG)n Simple_repeat Simple_repeat 2 55 0 227 246 79 35 chr4 41137687 41137801 -161190546 - L1ME LINE L1 -197 5924 5806 2263 59 41 31 chr4 41138037 41138357 -161189990 - L1PA12 LINE L1 0 6168 5846 1636 204 117 135 chr4 41138574 41139376 -161188971 + LTR28 LTR ERV1 1 972 -48 523 272 14 12 chr4 41139390 41139545 -161188802 + LTR28 LTR ERV1 666 1020 0 471 304 111 18 chr4 41140131 41140411 -161187936 + MLT1L LTR MaLR 308 613 -2 2230 124 48 22 chr4 41140493 41140848 -161187499 + THE1B LTR MaLR 1 364 0 11604 85 10 10 chr4 41140848 41142428 -161185919 + THE1B-int LTR MaLR 1 1580 0 1850 143 49 26 chr4 41142440 41142790 -161185557 + THE1B LTR MaLR 7 364 0 3674 136 12 71 chr4 41143263 41143997 -161184350 - LTR8 LTR ERV1 0 691 1 1627 160 225 13 chr4 41144135 41144517 -161183830 - LTR32 LTR ERVL 0 471 9 1495 180 107 42 chr4 41144815 41145142 -161183205 + LTR29 LTR ERV1 137 441 -154 2274 133 28 19 chr4 41145142 41145503 -161182844 + THE1B LTR MaLR 1 364 0 11390 94 14 6 chr4 41145503 41147071 -161181276 + THE1B-int LTR MaLR 1 1580 0 1924 128 7 126 chr4 41147071 41147484 -161180863 + THE1B LTR MaLR 1 364 0 1495 180 107 42 chr4 41147484 41147615 -161180732 + LTR29 LTR ERV1 440 591 -4 275 216 108 54 chr4 41147614 41147725 -161180622 - LTR8A LTR ERV1 -125 602 486 * 1074 134 13 71 chr4 41147846 41148070 -161180277 + MER20 DNA MER1_type 2 212 -7 1953 166 110 46 chr4 41148212 41148829 -161179518 - LTR8A LTR ERV1 0 691 34 214 318 101 16 chr4 41149456 41149585 -161178762 + L2 LINE L2 3133 3272 0 1031 217 55 38 chr4 41149924 41150376 -161177971 - LTR56 LTR ERV1 0 445 9 196 367 184 0 chr4 41151447 41151556 -161176791 - L2 LINE L2 0 3272 3144 795 240 47 47 chr4 41151573 41151873 -161176474 + LTR33 LTR ERVL 19 318 -203 674 174 94 7 chr4 41152541 41152679 -161175668 - MIR SINE MIR -105 157 8 716 252 69 12 chr4 41152707 41152953 -161175394 - MLT1J1 LTR MaLR 0 446 187 812 258 155 11 chr4 41153223 41153584 -161174763 - LTR33A LTR ERVL -4 519 107 528 186 145 8 chr4 41153585 41153709 -161174638 + MER49 LTR ERV1 1 141 -782 225 255 0 0 chr4 41153822 41153873 -161174474 + LTR67 LTR ERVL 146 196 -361 198 322 130 43 chr4 41154151 41154452 -161173895 + L2 LINE L2 1064 1390 -1924 227 30 0 30 chr4 41154684 41154717 -161173630 + (TG)n Simple_repeat Simple_repeat 1 32 0 269 291 9 18 chr4 41154822 41154932 -161173415 - L1ME LINE L1 -452 5669 5561 1892 172 3 0 chr4 41155343 41155646 -161172701 + AluJo SINE Alu 1 304 -8 355 331 24 0 chr4 41155734 41155861 -161172486 - L1ME LINE L1 -1131 5015 4886 332 245 21 43 chr4 41156027 41156121 -161172226 - MIR3 SINE MIR -12 196 105 511 287 52 0 chr4 41156643 41156779 -161171568 + MIR3 SINE MIR 60 202 -6 22 0 0 0 chr4 41157173 41157195 -161171152 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr4 41157926 41157948 -161170399 + AT_rich Low_complexity Low_complexity 1 22 0 216 0 0 0 chr4 41158135 41158159 -161170188 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1595 147 0 0 chr4 41158166 41158397 -161169950 - AluSx SINE Alu -57 255 25 229 36 0 0 chr4 41158413 41158441 -161169906 - AluSx SINE Alu -254 48 21 382 303 119 25 chr4 41158481 41158758 -161169589 - L1ME3A LINE L1 -219 5951 5649 970 217 13 17 chr4 41158759 41158989 -161169358 + MER58B DNA MER1_type 1 229 -112 22 0 0 0 chr4 41159272 41159294 -161169053 + AT_rich Low_complexity Low_complexity 1 22 0 2216 131 141 48 chr4 41160045 41160580 -161167767 + MER4B LTR ERV1 1 772 -7 2552 90 0 0 chr4 41160580 41160892 -161167455 - AluSx SINE Alu 0 312 1 1693 139 3 110 chr4 41161262 41161486 -161166861 - AluJb SINE Alu -11 301 123 2194 116 61 12 chr4 41161486 41161832 -161166515 + THE1B LTR MaLR 2 364 0 1693 139 3 110 chr4 41161832 41161944 -161166403 - AluJb SINE Alu -189 123 1 256 226 0 2 chr4 41161965 41162032 -161166315 - L1ME3A LINE L1 -607 5577 5512 2148 138 0 0 chr4 41162757 41163062 -161165285 + AluSq SINE Alu 1 305 -8 2290 234 44 14 chr4 41163104 41163737 -161164610 - MER97a DNA MER1_type? 0 894 243 661 233 0 14 chr4 41163809 41163955 -161164392 + MER33 DNA MER1_type 2 145 -179 373 191 0 0 chr4 41163947 41164015 -161164332 + MLT1F1 LTR MaLR 500 567 0 * 565 158 39 31 chr4 41164188 41164315 -161164032 + L1MB3 LINE L1 6054 6181 -2 441 0 0 0 chr4 41164987 41165036 -161163311 + (TG)n Simple_repeat Simple_repeat 1 49 0 188 125 25 50 chr4 41165092 41165132 -161163215 - MER5B DNA MER1_type -124 54 16 2337 113 0 0 chr4 41165218 41165527 -161162820 - AluSc SINE Alu 0 309 1 541 222 216 0 chr4 41165540 41165707 -161162640 + L2 LINE L2 1945 2147 -1167 1496 271 93 37 chr4 41165788 41165982 -161162365 - HAL1 LINE L1 0 2507 2325 225 0 0 0 chr4 41165982 41166007 -161162340 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1496 271 93 37 chr4 41166007 41166042 -161162305 - HAL1 LINE L1 -182 2325 2293 1540 156 46 49 chr4 41166042 41166224 -161162123 - AluJb SINE Alu -6 306 124 2104 111 38 0 chr4 41166224 41166512 -161161835 + AluSp SINE Alu 5 303 -10 1540 156 46 49 chr4 41166512 41166636 -161161711 - AluJb SINE Alu -188 124 1 1496 271 93 37 chr4 41166636 41167154 -161161193 - HAL1 LINE L1 -214 2293 1717 3043 257 95 63 chr4 41167160 41167372 -161160975 - HAL1 LINE L1 -1087 1420 1216 1769 168 7 10 chr4 41167372 41167664 -161160683 + AluJb SINE Alu 1 291 -21 3043 257 95 63 chr4 41167664 41168818 -161159529 - HAL1 LINE L1 -1291 1216 10 2125 137 73 9 chr4 41169112 41169455 -161158892 + MLT1A1 LTR MaLR 1 365 0 258 32 0 0 chr4 41169990 41170021 -161158326 + (GA)n Simple_repeat Simple_repeat 2 32 0 2017 149 129 48 chr4 41170130 41170526 -161157821 - MSTA LTR MaLR 0 428 1 198 0 0 0 chr4 41170893 41170915 -161157432 + (CAAAA)n Simple_repeat Simple_repeat 3 24 0 180 0 0 0 chr4 41170977 41170997 -161157350 + (A)n Simple_repeat Simple_repeat 1 20 0 2494 77 0 3 chr4 41171500 41171812 -161156535 + AluSx SINE Alu 1 311 -1 361 267 23 0 chr4 41172152 41172238 -161156109 - L2 LINE L2 0 3313 3226 2164 187 19 16 chr4 41172361 41172453 -161155894 - MER63B DNA MER1_type -626 436 346 2514 122 96 15 chr4 41172453 41172848 -161155499 + MSTA LTR MaLR 1 427 -1 2164 187 19 16 chr4 41172848 41173182 -161155165 - MER63B DNA MER1_type -716 346 9 344 299 229 0 chr4 41173190 41173334 -161155013 - L2 LINE L2 -261 3052 2876 243 263 62 25 chr4 41173341 41173421 -161154926 - L2 LINE L2 -74 3198 3116 694 189 74 74 chr4 41173431 41173481 -161154866 + L1MC5 LINE L1 7350 7399 -562 2343 107 0 19 chr4 41173481 41173799 -161154548 + AluSx SINE Alu 1 312 0 694 189 74 74 chr4 41173799 41173992 -161154355 + L1MC5 LINE L1 7398 7593 -368 7094 52 13 19 chr4 41174001 41175507 -161152840 + SVA Other Other 5 1386 0 21 0 0 0 chr4 41176042 41176063 -161152284 + AT_rich Low_complexity Low_complexity 1 21 0 964 181 50 50 chr4 41176099 41176381 -161151966 + L1MC5 LINE L1 7580 7861 -100 448 322 20 45 chr4 41176715 41176914 -161151433 + MIR3 SINE MIR 3 196 -12 2253 119 0 0 chr4 41177349 41177643 -161150704 + AluSg SINE Alu 1 294 -16 1899 130 0 38 chr4 41178330 41178645 -161149702 + AluSx SINE Alu 1 304 0 1202 114 0 0 chr4 41178645 41178812 -161149535 + AluSg/x SINE Alu 137 303 -9 693 194 161 0 chr4 41178820 41179006 -161149341 - L1ME3A LINE L1 -28 6142 5927 809 219 70 0 chr4 41179028 41179229 -161149118 - L1ME1 LINE L1 -11 6155 5941 857 69 25 119 chr4 41179242 41179402 -161148945 - AluJb SINE Alu -10 302 158 798 234 20 63 chr4 41179444 41179696 -161148651 - L1ME1 LINE L1 -277 5893 5653 1727 208 39 48 chr4 41179848 41180261 -161148086 + LTR2 LTR ERV1 41 449 0 408 260 40 44 chr4 41180262 41180554 -161147793 - L1ME1 LINE L1 -1123 5023 4650 190 227 45 0 chr4 41180586 41180630 -161147717 + L2 LINE L2 3202 3247 -25 764 178 52 35 chr4 41181942 41182116 -161146231 + MER45A DNA AcHobo 1 177 -1 187 163 122 20 chr4 41182155 41182204 -161146143 + L2 LINE L2 3259 3312 -1 184 288 88 12 chr4 41183483 41183563 -161144784 + MIR SINE MIR 91 176 -86 297 346 37 0 chr4 41183768 41183904 -161144443 - MIR SINE MIR -86 176 36 237 65 0 0 chr4 41184034 41184065 -161144282 + (TA)n Simple_repeat Simple_repeat 1 31 0 411 211 192 0 chr4 41184528 41184632 -161143715 - L2 LINE L2 0 3313 3190 2163 134 3 0 chr4 41185103 41185408 -161142939 + AluJb SINE Alu 1 306 -6 1874 240 118 36 chr4 41185556 41186106 -161142241 - MLT1G1 LTR MaLR 0 595 1 227 330 0 62 chr4 41186303 41186415 -161141932 - L3 LINE CR1 -36 1541 1437 566 347 38 8 chr4 41186868 41187130 -161141217 - L3 LINE CR1 -128 1449 1180 1705 179 7 17 chr4 41187469 41187760 -161140587 + AluJo SINE Alu 5 292 -20 705 266 116 13 chr4 41187903 41188136 -161140211 - MIR SINE MIR -3 259 3 286 236 112 11 chr4 41188149 41188238 -161140109 + MIR SINE MIR 47 144 -118 1813 170 10 17 chr4 41188244 41188544 -161139803 + AluJo SINE Alu 1 298 -14 308 208 158 30 chr4 41189339 41189440 -161138907 - MIR SINE MIR 0 262 149 724 256 12 0 chr4 41189504 41189676 -161138671 - MER58B DNA MER1_type 0 341 168 216 135 0 0 chr4 41191037 41191074 -161137273 + (TG)n Simple_repeat Simple_repeat 2 38 0 849 175 44 92 chr4 41191178 41191406 -161136941 - MER20 DNA MER1_type -2 217 1 385 358 30 6 chr4 41191408 41191573 -161136774 + MIR3 SINE MIR 28 196 -12 2172 116 0 0 chr4 41192079 41192372 -161135975 - AluSx SINE Alu -19 293 1 2305 92 20 7 chr4 41193303 41193606 -161134741 - AluSq SINE Alu -6 307 1 2006 147 3 7 chr4 41194566 41194872 -161133475 - AluSx SINE Alu -3 309 5 659 211 15 0 chr4 41194911 41195044 -161133303 - MER58B DNA MER1_type -6 335 201 189 171 0 0 chr4 41195142 41195177 -161133170 + (TATATG)n Simple_repeat Simple_repeat 4 38 0 260 222 86 0 chr4 41195246 41195327 -161133020 + L1MC4 LINE L1 6619 6706 -1336 270 0 0 0 chr4 41195348 41195378 -161132969 + (TG)n Simple_repeat Simple_repeat 1 30 0 524 267 107 48 chr4 41195698 41195904 -161132443 - Charlie8 DNA MER1_type -2162 255 38 232 291 0 0 chr4 41196000 41196055 -161132292 + (CGTG)n Simple_repeat Simple_repeat 4 58 0 280 328 129 13 chr4 41196055 41196287 -161132060 - L1MC/D LINE L1 -2145 5663 5405 301 91 18 18 chr4 41196344 41196399 -161131948 + (TA)n Simple_repeat Simple_repeat 1 55 0 682 226 65 57 chr4 41196781 41196849 -161131498 - MIR SINE MIR 0 262 196 1945 148 0 7 chr4 41196849 41197152 -161131195 - AluJb SINE Alu -11 301 1 682 226 65 57 chr4 41197152 41197331 -161131016 - MIR SINE MIR -66 196 13 427 242 53 8 chr4 41197369 41197501 -161130846 - L1 LINE L1 -1310 4836 4699 25 23 0 23 chr4 41197778 41197800 -161130547 + AT_rich Low_complexity Low_complexity 1 23 -19 1996 110 4 0 chr4 41197800 41198063 -161130284 - AluSp SINE Alu -14 299 36 25 23 0 23 chr4 41198063 41198083 -161130264 + AT_rich Low_complexity Low_complexity 23 42 0 2160 133 0 25 chr4 41198875 41199191 -161129156 + AluSx SINE Alu 1 308 -4 198 0 0 0 chr4 41199294 41199316 -161129031 + (TTTAA)n Simple_repeat Simple_repeat 3 24 0 261 208 0 0 chr4 41202521 41202569 -161125778 - L2 LINE L2 -9 3263 3216 2509 77 0 10 chr4 41202977 41203288 -161125059 + AluSq SINE Alu 1 308 -5 305 214 0 71 chr4 41203442 41203526 -161124821 - MER58B DNA MER1_type -68 273 196 2229 105 16 3 chr4 41203594 41203899 -161124448 - AluSx SINE Alu -3 309 1 1990 121 14 3 chr4 41203961 41204278 -161124069 - AluSq SINE Alu 0 320 1 22 35 0 0 chr4 41204609 41204638 -161123709 + AT_rich Low_complexity Low_complexity 1 29 0 1083 128 0 7 chr4 41204709 41204858 -161123489 + AluSq/x SINE Alu 1 148 -164 235 274 62 106 chr4 41204874 41204899 -161123448 - MIR3 SINE MIR -20 188 163 2352 109 0 0 chr4 41204899 41205201 -161123146 + AluSx SINE Alu 1 302 -10 235 274 62 106 chr4 41205201 41205354 -161122993 - MIR3 SINE MIR -45 163 18 841 203 68 0 chr4 41205355 41205532 -161122815 - MER5A DNA MER1_type 0 189 1 680 250 61 56 chr4 41205869 41206144 -161122203 - HAL1 LINE L1 -168 2339 2060 1272 181 55 65 chr4 41206144 41206454 -161121893 - AluJb SINE Alu -2 310 4 680 250 61 56 chr4 41206454 41206538 -161121809 - HAL1 LINE L1 -447 2060 1978 1034 230 142 93 chr4 41206555 41207304 -161121043 - HAL1 LINE L1 -622 1885 1101 1304 139 10 10 chr4 41207345 41207546 -161120801 - AluJo SINE Alu -28 284 84 474 218 105 65 chr4 41207547 41207795 -161120552 - HAL1 LINE L1 -1467 1040 783 536 273 145 67 chr4 41207874 41208453 -161119894 - HAL1 LINE L1 -1848 659 36 2247 98 3 22 chr4 41208531 41208849 -161119498 - AluSq SINE Alu -1 312 1 21 36 0 0 chr4 41208856 41208884 -161119463 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr4 41209064 41209092 -161119255 + AT_rich Low_complexity Low_complexity 1 28 0 3267 104 25 40 chr4 41209098 41209618 -161118729 - L1MA8 LINE L1 -8 6283 5772 2385 57 0 0 chr4 41210295 41210600 -161117747 + AluY SINE Alu 1 305 0 247 296 37 19 chr4 41210614 41210722 -161117625 - L2 LINE L2 -3 3310 3201 1828 158 36 26 chr4 41210945 41211332 -161117015 - Charlie5 DNA MER1_type 0 2624 2234 639 186 0 31 chr4 41211329 41211458 -161116889 - Charlie5 DNA MER1_type -2485 127 3 * 2021 130 9 40 chr4 41212519 41212841 -161115506 - AluSx SINE Alu 0 312 1 355 228 13 0 chr4 41213037 41213116 -161115231 - L1MC4 LINE L1 0 8042 7963 831 178 41 0 chr4 41213117 41213263 -161115084 - MER58B DNA MER1_type -10 331 180 282 202 84 146 chr4 41213289 41213467 -161114880 - L1MC4 LINE L1 -73 7969 7803 1370 211 41 57 chr4 41213492 41213881 -161114466 - MLT2C1 LTR ERVL -1 396 14 686 260 56 5 chr4 41214529 41214725 -161113622 - MIR SINE MIR 0 262 57 260 250 162 0 chr4 41217728 41217796 -161110551 + MIR SINE MIR 49 127 -81 900 191 38 11 chr4 41217804 41217987 -161110360 - L1MC1 LINE L1 -1 6332 6145 1315 102 91 0 chr4 41217987 41218184 -161110163 + L1MC1 LINE L1 5948 6162 -171 1963 146 7 0 chr4 41218205 41218492 -161109855 + AluJb SINE Alu 1 289 -23 1536 171 82 4 chr4 41218628 41218909 -161109438 - AluSq SINE Alu -10 303 1 2398 71 3 0 chr4 41220439 41220736 -161107611 - AluY SINE Alu -4 307 10 559 194 24 118 chr4 41221248 41221459 -161106888 - L1MC5 LINE L1 -78 7883 7693 1772 187 71 16 chr4 41221464 41221960 -161106387 + LTR27 LTR ERV1 3 501 0 1325 205 48 51 chr4 41221962 41222377 -161105970 - L1MC5 LINE L1 -271 7690 7277 2153 105 20 3 chr4 41223281 41223576 -161104771 - AluSc SINE Alu -9 300 1 1894 118 81 0 chr4 41223579 41223851 -161104496 - AluSp SINE Alu -19 294 1 342 161 103 58 chr4 41224202 41224289 -161104058 - L1MC5 LINE L1 -2045 5763 5673 5754 116 61 19 chr4 41224559 41224684 -161103663 + L1MA9 LINE L1 5223 5341 -971 3347 88 36 28 chr4 41224684 41225031 -161103316 - L1MA4A LINE L1 -5 6298 5944 2052 43 0 0 chr4 41225031 41225263 -161103084 - AluY SINE Alu -16 295 64 3347 88 36 28 chr4 41225263 41225416 -161102931 - L1MA4A LINE L1 -359 5944 5794 5754 116 61 19 chr4 41225416 41225878 -161102469 + L1MA4A LINE L1 5341 5782 -530 2662 46 0 0 chr4 41225878 41226185 -161102162 + AluY SINE Alu 1 307 -4 5754 116 61 19 chr4 41226185 41226657 -161101690 + L1MA9 LINE L1 5782 6312 0 286 317 29 29 chr4 41226708 41226812 -161101535 + MIR SINE MIR 46 149 -113 258 277 23 39 chr4 41227216 41227346 -161101001 + L1M LINE L1 5254 5381 -2427 552 286 17 6 chr4 41227921 41228099 -161100248 - L1MC4a LINE L1 -1955 5853 5674 1626 160 88 0 chr4 41228205 41228468 -161099879 - AluJb SINE Alu -26 286 1 310 301 112 36 chr4 41228478 41228728 -161099619 - L1MCa LINE L1 -853 1637 1182 891 200 54 42 chr4 41228738 41228978 -161099369 - L1ME3 LINE L1 -2 6160 5918 306 283 49 87 chr4 41229054 41229137 -161099210 - L1MCa LINE L1 -5046 1073 988 2197 94 7 10 chr4 41229137 41229436 -161098911 - AluSc SINE Alu -11 298 1 306 283 49 87 chr4 41229436 41229858 -161098489 - L1MCa LINE L1 -5131 988 587 25 0 0 0 chr4 41230045 41230070 -161098277 + AT_rich Low_complexity Low_complexity 1 25 0 338 304 80 47 chr4 41230100 41230171 -161098176 + L1M4 LINE L1 4633 4700 -1446 1793 242 79 30 chr4 41230171 41230662 -161097685 + LTR40a LTR ERVL 1 515 -4 338 304 80 47 chr4 41230662 41230942 -161097405 + L1M4 LINE L1 4700 4969 -1177 1754 156 13 20 chr4 41230942 41231243 -161097104 + AluJo SINE Alu 1 299 -13 338 304 80 47 chr4 41231243 41231489 -161096858 + L1M4 LINE L1 4969 5251 -895 2584 68 0 0 chr4 41231796 41232106 -161096241 + AluY SINE Alu 1 310 -1 2089 123 0 3 chr4 41232316 41232608 -161095739 - AluJb SINE Alu -21 291 1 2281 97 0 3 chr4 41232687 41232987 -161095360 + AluSx SINE Alu 1 299 -13 2199 93 0 48 chr4 41233333 41233645 -161094702 - AluSq SINE Alu -16 297 1 516 179 20 169 chr4 41233819 41233942 -161094405 - MIR SINE MIR -22 240 157 2474 47 7 0 chr4 41233942 41234238 -161094109 + AluY SINE Alu 1 298 -13 516 179 20 169 chr4 41234238 41234315 -161094032 - MIR SINE MIR -105 157 70 1368 214 39 29 chr4 41234485 41234869 -161093478 + Charlie4a DNA MER1_type 1 388 -120 278 179 71 36 chr4 41235021 41235105 -161093242 - Charlie4 DNA MER1_type -120 1841 1755 * 542 234 0 0 chr4 41235102 41235213 -161093134 + Charlie4 DNA MER1_type 1851 1961 0 1395 196 78 37 chr4 41235223 41235453 -161092894 + MER58B DNA MER1_type 4 252 -2168 2451 83 0 0 chr4 41235453 41235755 -161092592 - AluSg SINE Alu -8 302 1 1395 196 78 37 chr4 41235755 41235846 -161092501 + MER58B DNA MER1_type 252 338 -3 213 121 0 0 chr4 41236786 41236819 -161091528 + (TTCA)n Simple_repeat Simple_repeat 4 36 0 470 207 0 24 chr4 41238052 41238221 -161090126 + (CTATT)n Simple_repeat Simple_repeat 4 168 0 470 207 0 24 chr4 41238232 41238401 -161089946 + (CTATT)n Simple_repeat Simple_repeat 4 168 0 225 140 0 35 chr4 41238548 41238605 -161089742 + (CTATT)n Simple_repeat Simple_repeat 4 58 0 1545 249 59 27 chr4 41238810 41239024 -161089323 - L2 LINE L2 0 3313 3107 360 0 0 0 chr4 41239024 41239064 -161089283 + (TG)n Simple_repeat Simple_repeat 2 41 0 1545 249 59 27 chr4 41239064 41239547 -161088800 - L2 LINE L2 -206 3107 2601 1788 168 7 7 chr4 41240274 41240679 -161087668 + AluJo SINE Alu 3 407 0 1486 177 21 28 chr4 41240729 41241017 -161087330 - AluJb SINE Alu -26 286 1 365 310 13 19 chr4 41241058 41241216 -161087131 - MER117 DNA MER1_type 0 197 41 274 359 155 0 chr4 41243789 41243970 -161084377 - MIR SINE MIR -41 221 13 21 0 0 0 chr4 41244606 41244627 -161083720 + GC_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr4 41244841 41244865 -161083482 + GC_rich Low_complexity Low_complexity 1 24 0 357 82 0 0 chr4 41245234 41245283 -161083064 + (TCC)n Simple_repeat Simple_repeat 2 50 0 1016 154 0 12 chr4 41246608 41246770 -161081577 + FRAM SINE Alu 1 155 -21 1731 115 4 32 chr4 41247878 41248131 -161080216 + AluSx SINE Alu 1 246 -66 2284 92 3 0 chr4 41248333 41248628 -161079719 - AluSg SINE Alu -14 296 1 486 212 20 0 chr4 41248948 41249047 -161079300 + MIR SINE MIR 162 262 0 613 184 9 18 chr4 41249394 41249508 -161078839 + MIR SINE MIR 7 119 -143 1964 132 0 0 chr4 41249775 41250048 -161078299 + AluSx SINE Alu 13 285 -27 212 330 78 39 chr4 41250880 41250983 -161077364 - MIR3 SINE MIR -18 190 84 477 259 123 25 chr4 41251020 41251182 -161077165 + MIR3 SINE MIR 25 202 -6 496 145 0 36 chr4 41251544 41251627 -161076720 + MADE1 DNA Mariner 1 80 0 2002 171 83 43 chr4 41252717 41253161 -161075186 + LTR40b LTR ERVL 1 462 0 205 323 97 38 chr4 41253285 41253471 -161074876 - L2 LINE L2 -464 2850 2654 260 335 47 66 chr4 41253579 41253791 -161074556 - L2 LINE L2 -896 2418 2211 232 345 112 0 chr4 41253856 41253972 -161074375 + MIR SINE MIR 89 217 -45 247 341 158 31 chr4 41254084 41254180 -161074167 - L2 LINE L2 -1202 2112 2029 2511 42 0 3 chr4 41254180 41254487 -161073860 + AluY SINE Alu 1 306 -5 247 341 158 31 chr4 41254487 41254771 -161073576 - L2 LINE L2 -1285 2029 1684 461 288 25 0 chr4 41254810 41254928 -161073419 - L2 LINE L2 -2 3311 3191 2382 105 0 0 chr4 41255126 41255431 -161072916 + AluSx SINE Alu 1 305 -7 2230 133 0 0 chr4 41255484 41255792 -161072555 - AluSx SINE Alu -4 308 1 21 57 0 0 chr4 41256118 41256153 -161072194 + AT_rich Low_complexity Low_complexity 1 35 0 567 228 168 0 chr4 41257288 41257437 -161070910 - MER5A DNA MER1_type -7 182 9 642 297 70 31 chr4 41257513 41258124 -161070223 - Charlie7 DNA MER1_type -1930 682 7 467 293 122 0 chr4 41258482 41258629 -161069718 + MIR SINE MIR 35 199 -63 8884 106 25 29 chr4 41259664 41260632 -161067715 - HSMAR2 DNA Mariner -1 1301 338 2111 130 0 0 chr4 41260632 41260916 -161067431 - AluSx SINE Alu -28 284 1 8884 106 25 29 chr4 41260916 41261253 -161067094 - HSMAR2 DNA Mariner -964 338 1 2502 178 68 7 chr4 41261310 41261854 -161066493 - Charlie1 DNA MER1_type -7 2754 2178 1091 116 7 0 chr4 41261855 41262002 -161066345 - AluSg/x SINE Alu -17 293 146 1910 127 18 3 chr4 41262691 41262975 -161065372 - AluSx SINE Alu -24 288 1 22 0 0 0 chr4 41264644 41264666 -161063681 + AT_rich Low_complexity Low_complexity 1 22 0 1214 181 27 8 chr4 41264752 41265012 -161063335 + MER33 DNA MER1_type 6 270 -54 2734 101 32 10 chr4 41265012 41265417 -161062930 + L1MA3 LINE L1 5892 6305 0 28 0 0 0 chr4 41265423 41265451 -161062896 + AT_rich Low_complexity Low_complexity 1 28 0 285 189 0 0 chr4 41265451 41265504 -161062843 + MER33 DNA MER1_type 297 349 -14 180 0 0 0 chr4 41265600 41265620 -161062727 + (T)n Simple_repeat Simple_repeat 1 20 0 326 298 85 14 chr4 41266312 41266453 -161061894 + L3 LINE CR1 1214 1364 -213 283 381 25 5 chr4 41266540 41266737 -161061610 - L3 LINE CR1 -108 1469 1269 241 322 88 38 chr4 41266908 41267009 -161061338 - L2 LINE L2 -463 2851 2757 1654 219 16 30 chr4 41267009 41267379 -161060968 + MLT1A1 LTR MaLR 1 365 0 241 322 88 38 chr4 41267379 41267516 -161060831 - L2 LINE L2 -557 2757 2601 2369 105 0 0 chr4 41267782 41268087 -161060260 + AluSp SINE Alu 1 305 -8 366 332 123 23 chr4 41268176 41268396 -161059951 + L2 LINE L2 3031 3272 0 21 0 0 0 chr4 41268417 41268438 -161059909 + AT_rich Low_complexity Low_complexity 1 21 0 2939 66 0 43 chr4 41268876 41269077 -161059270 + L1PB1 LINE L1 5776 5953 -198 2211 126 0 0 chr4 41269077 41269378 -161058969 + AluSx SINE Alu 1 301 -11 2939 66 0 43 chr4 41269378 41269569 -161058778 + L1PB1 LINE L1 5953 6151 0 493 237 107 53 chr4 41269706 41269765 -161058582 - MER45A DNA AcHobo -1403 178 124 4757 44 9 2 chr4 41269765 41270316 -161058031 + L1PA5 LINE L1 5598 6152 -2 493 237 107 53 chr4 41270316 41270425 -161057922 - MER45A DNA AcHobo -1457 124 1 328 287 70 23 chr4 41270890 41271019 -161057328 + MLT1L LTR MaLR 47 181 -434 216 158 0 0 chr4 41271138 41271176 -161057171 + CT-rich Low_complexity Low_complexity 2 39 0 244 238 95 0 chr4 41271382 41271466 -161056881 + MLT1L LTR MaLR 524 615 0 207 69 0 0 chr4 41271798 41271827 -161056520 + (TG)n Simple_repeat Simple_repeat 2 30 0 1457 160 45 11 chr4 41272098 41272385 -161055962 - MER33 DNA MER1_type -22 302 6 375 202 65 40 chr4 41272540 41272664 -161055683 - MER103 DNA DNA -3 163 37 2494 11 0 0 chr4 41273062 41273334 -161055013 - AluYa5 SINE Alu -1 310 39 25 31 0 0 chr4 41274399 41274431 -161053916 + AT_rich Low_complexity Low_complexity 1 32 0 289 287 119 10 chr4 41275836 41275937 -161052410 - MIR3 SINE MIR -9 199 88 2333 113 3 0 chr4 41277679 41277990 -161050357 - AluSx SINE Alu 0 312 1 42980 59 4 3 chr4 41278245 41280379 -161047968 + L1P2 LINE L1 8 2139 -4016 2403 83 0 7 chr4 41280379 41280681 -161047666 + AluY SINE Alu 1 300 -11 42980 59 4 3 chr4 41280681 41284325 -161044022 + L1P2 LINE L1 2139 5787 -368 2112 134 7 0 chr4 41284520 41284819 -161043528 - AluSx SINE Alu -11 301 1 4624 152 35 29 chr4 41284868 41285709 -161042638 + L1MC1 LINE L1 5396 6241 -92 745 76 0 0 chr4 41285779 41285871 -161042476 + L1MC1 LINE L1 6240 6331 -2 2328 69 28 0 chr4 41285970 41286258 -161042089 + AluSc SINE Alu 4 299 -10 209 348 192 30 chr4 41287394 41287759 -161040588 + L2 LINE L2 2505 2928 -386 511 256 89 28 chr4 41287808 41287988 -161040359 + L2 LINE L2 3109 3299 -14 2143 122 0 0 chr4 41288135 41288429 -161039918 + AluSx SINE Alu 1 294 -18 2332 80 7 3 chr4 41289299 41289601 -161038746 + AluSp SINE Alu 1 303 -10 1883 153 0 3 chr4 41290201 41290489 -161037858 + AluSx SINE Alu 1 287 -25 13933 85 7 2 chr4 41291962 41293802 -161034545 - L1P LINE L1 -4290 1856 8 2333 113 3 0 chr4 41294057 41294368 -161033979 + AluSx SINE Alu 1 312 0 1546 145 8 0 chr4 41295045 41295294 -161033053 + L1MA5 LINE L1 6035 6285 -15 701 261 65 11 chr4 41295657 41295917 -161032430 + L1ME1 LINE L1 5619 5892 -272 2129 127 0 0 chr4 41295967 41296282 -161032065 - AluSx SINE Alu 0 315 1 997 159 48 48 chr4 41296290 41296497 -161031850 - AluJo SINE Alu -18 294 88 395 294 55 32 chr4 41296497 41296715 -161031632 + L1ME1 LINE L1 5901 6123 -43 239 200 0 0 chr4 41296753 41296798 -161031549 + MIR SINE MIR 213 257 -5 483 211 29 28 chr4 41296812 41296943 -161031404 - MIR SINE MIR -68 140 34 2380 151 28 47 chr4 41297137 41297169 -161031178 - L1MB7 LINE L1 -28 6156 6125 2087 117 3 7 chr4 41297169 41297467 -161030880 + AluSx SINE Alu 1 297 -15 2380 151 28 47 chr4 41297467 41297899 -161030448 - L1MB7 LINE L1 -59 6125 5701 509 310 124 44 chr4 41298347 41298505 -161029842 + LTR16C LTR ERVL 74 218 -273 1198 198 18 18 chr4 41298505 41298727 -161029620 - MER58A DNA MER1_type -1 223 2 509 310 124 44 chr4 41298727 41298955 -161029392 + LTR16C LTR ERVL 218 491 0 655 246 74 0 chr4 41299008 41299183 -161029164 + MIR SINE MIR 46 233 -29 1634 128 11 34 chr4 41299318 41299584 -161028763 - L1MC1 LINE L1 -9 6324 6065 2375 79 0 20 chr4 41299584 41299889 -161028458 - AluSq SINE Alu -14 299 1 622 236 55 6 chr4 41300042 41300224 -161028123 + L1MC5 LINE L1 7723 7913 -48 3453 78 2 2 chr4 41301195 41301620 -161026727 + L1PA10 LINE L1 5736 6160 -8 361 252 90 31 chr4 41302859 41303097 -161025250 - MLT1L LTR MaLR -78 537 205 269 250 60 24 chr4 41303292 41303376 -161024971 - MLT1L LTR MaLR -528 87 1 219 327 59 0 chr4 41303418 41303519 -161024828 - L2 LINE L2 -659 2655 2549 567 40 0 119 chr4 41303691 41303792 -161024555 - AluY SINE Alu 0 310 222 2169 157 6 23 chr4 41304147 41304497 -161023850 + MER2 DNA MER2_type 1 344 0 951 123 0 22 chr4 41304678 41304816 -161023531 + FLAM_C SINE Alu 1 135 -8 1499 146 70 35 chr4 41304856 41305143 -161023204 - AluSx SINE Alu -15 297 1 610 220 6 66 chr4 41305152 41305334 -161023013 + L2 LINE L2 3142 3312 -1 2094 118 27 0 chr4 41305489 41305785 -161022562 + AluSx SINE Alu 1 304 -8 1758 155 47 7 chr4 41306163 41306459 -161021888 + AluJo SINE Alu 2 309 -3 208 225 0 0 chr4 41306654 41306694 -161021653 + CT-rich Low_complexity Low_complexity 1 40 0 231 271 59 118 chr4 41307215 41307418 -161020929 + L2 LINE L2 2865 3055 -217 2431 158 47 26 chr4 41307965 41308390 -161019957 - Tigger2a DNA MER2_type 0 434 1 418 240 39 31 chr4 41308980 41309109 -161019238 - MIR SINE MIR -113 149 20 370 250 0 0 chr4 41310868 41310940 -161017407 + L2 LINE L2 3136 3207 -65 281 299 0 0 chr4 41311222 41311289 -161017058 + MIR SINE MIR 33 99 -163 211 175 0 0 chr4 41311410 41311450 -161016897 + L2 LINE L2 3274 3313 0 279 256 122 0 chr4 41311452 41311534 -161016813 + MIR3 SINE MIR 105 196 -12 1554 103 4 13 chr4 41311995 41312228 -161016119 - MSTA LTR MaLR -1 427 197 1751 123 0 16 chr4 41312236 41312489 -161015858 + AluSx SINE Alu 41 289 -23 22 56 0 0 chr4 41312571 41312607 -161015740 + AT_rich Low_complexity Low_complexity 1 36 0 402 266 112 43 chr4 41314229 41314533 -161013814 + L1ME4a LINE L1 5738 6062 -59 352 296 102 24 chr4 41314919 41315125 -161013222 - MIR SINE MIR -13 249 28 1251 94 16 11 chr4 41315809 41316000 -161012347 + L1PB2 LINE L1 5958 6149 -2 210 315 135 0 chr4 41318178 41318289 -161010058 + L2 LINE L2 3139 3264 -8 640 291 122 27 chr4 41318655 41319229 -161009118 + L2 LINE L2 2651 3290 -23 307 308 44 0 chr4 41320485 41320576 -161007771 + MIR SINE MIR 47 141 -121 241 222 37 0 chr4 41320680 41320734 -161007613 + MLT1I LTR MaLR 347 402 -7 236 286 87 24 chr4 41321072 41321198 -161007149 - MLT1K LTR MaLR -445 143 10 523 155 0 0 chr4 41321280 41321364 -161006983 - L1P LINE L1 -1390 4756 4673 247 298 67 10 chr4 41321366 41321470 -161006877 - MIR SINE MIR -66 142 33 8251 97 23 0 chr4 41322677 41323846 -161004501 + L1P LINE L1 3635 4830 -1316 1052 188 97 35 chr4 41323957 41324002 -161004345 - L1MCa LINE L1 -2967 3459 3418 351 0 0 0 chr4 41324002 41324041 -161004306 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1052 188 97 35 chr4 41324041 41324285 -161004062 - L1MCa LINE L1 -3008 3418 3144 2203 100 7 0 chr4 41324285 41324575 -161003772 + AluSp SINE Alu 1 292 -21 1052 188 97 35 chr4 41324575 41324624 -161003723 - L1MCa LINE L1 -3282 3144 3099 * 2048 184 29 40 chr4 41324620 41325214 -161003133 - L1MCa LINE L1 -3924 2683 2046 1498 177 21 6 chr4 41325430 41325855 -161002492 + L1 LINE L1 3429 3860 -3705 485 108 43 11 chr4 41325848 41325941 -161002406 - L1M1 LINE L1 -4007 3558 3463 * 6948 214 13 4 chr4 41325943 41327400 -161000947 + L1 LINE L1 5028 6497 -1068 325 278 27 32 chr4 41327524 41327711 -161000636 - AluY SINE Alu -28 273 88 329 214 71 0 chr4 41328553 41328637 -160999710 - MER58B DNA MER1_type -3 338 249 2389 87 0 13 chr4 41328644 41328953 -160999394 + AluSg SINE Alu 1 305 -5 294 214 0 71 chr4 41329107 41329191 -160999156 - MER58B DNA MER1_type -68 273 196 2196 112 16 3 chr4 41329259 41329563 -160998784 - AluSx SINE Alu -4 308 1 2010 121 14 3 chr4 41329625 41329942 -160998405 - AluSq SINE Alu 0 320 1 22 35 0 0 chr4 41330273 41330302 -160998045 + AT_rich Low_complexity Low_complexity 1 29 0 1092 128 0 7 chr4 41330373 41330522 -160997825 + AluSq/x SINE Alu 1 148 -165 184 274 62 106 chr4 41330537 41330562 -160997785 - MIR3 SINE MIR -20 188 163 2312 110 3 0 chr4 41330562 41330862 -160997485 + AluSx SINE Alu 1 301 -11 184 274 62 106 chr4 41330862 41331015 -160997332 - MIR3 SINE MIR -45 163 18 782 203 68 0 chr4 41331016 41331193 -160997154 - MER5A DNA MER1_type 0 189 1 1366 224 184 83 chr4 41331530 41331805 -160996542 - HAL1 LINE L1 -168 2339 2093 1282 177 55 65 chr4 41331805 41332115 -160996232 - AluJb SINE Alu -2 310 4 1366 224 184 83 chr4 41332115 41332965 -160995382 - HAL1 LINE L1 -414 2093 1101 1947 138 7 0 chr4 41333006 41333288 -160995059 - AluJb SINE Alu -28 284 1 456 212 20 0 chr4 41333608 41333707 -160994640 + MIR SINE MIR 162 262 0 572 184 9 18 chr4 41334054 41334168 -160994179 + MIR SINE MIR 7 119 -143 1986 132 0 0 chr4 41334435 41334708 -160993639 + AluSx SINE Alu 13 285 -27 182 330 78 39 chr4 41335539 41335642 -160992705 - MIR3 SINE MIR -18 190 84 385 261 130 25 chr4 41335679 41335840 -160992507 + MIR3 SINE MIR 25 202 -6 474 145 0 36 chr4 41336202 41336285 -160992062 + MADE1 DNA Mariner 1 80 0 1868 171 83 43 chr4 41337375 41337819 -160990528 + LTR40b LTR ERVL 1 462 0 196 322 55 71 chr4 41338266 41338449 -160989898 - L2 LINE L2 -924 2390 2211 207 336 125 0 chr4 41338519 41338623 -160989724 + MIR SINE MIR 94 210 -52 2449 48 0 10 chr4 41338836 41339145 -160989202 + AluY SINE Alu 1 306 -5 427 288 25 0 chr4 41339472 41339590 -160988757 - L2 LINE L2 -2 3311 3191 2181 96 7 7 chr4 41339788 41340080 -160988267 + AluSq SINE Alu 1 292 -21 1799 100 4 8 chr4 41340262 41340502 -160987845 + AluSg SINE Alu 49 287 -23 731 139 9 0 chr4 41340605 41340713 -160987634 - AluSg/x SINE Alu -11 298 190 1083 112 0 0 chr4 41340813 41340956 -160987391 + AluSg/x SINE Alu 160 302 -10 21 0 0 0 chr4 41341194 41341215 -160987132 + AT_rich Low_complexity Low_complexity 1 21 0 186 43 0 0 chr4 41341346 41341369 -160986978 + (TG)n Simple_repeat Simple_repeat 2 24 0 1771 159 11 25 chr4 41341401 41341684 -160986663 + AluJo SINE Alu 11 289 -23 2260 101 3 7 chr4 41341796 41342093 -160986254 - AluSc SINE Alu -13 296 1 430 282 73 40 chr4 41342093 41342341 -160986006 + L2 LINE L2 3051 3306 -7 420 211 88 119 chr4 41344492 41344641 -160983706 - MIR SINE MIR -2 260 121 655 139 0 111 chr4 41344641 41344785 -160983562 + FLAM_A SINE Alu 1 128 -5 420 211 88 119 chr4 41344785 41344895 -160983452 - MIR SINE MIR -141 121 9 200 281 49 24 chr4 41344960 41345042 -160983305 - L3b LINE CR1 -197 1386 1303 677 190 61 37 chr4 41345459 41345622 -160982725 - MER5A DNA MER1_type -8 181 15 231 61 0 0 chr4 41345944 41345977 -160982370 + (CCCTG)n Simple_repeat Simple_repeat 3 35 0 222 384 20 0 chr4 41346263 41346414 -160981933 + L2 LINE L2 2934 3087 -185 2059 109 7 20 chr4 41346874 41347176 -160981171 + AluSc SINE Alu 1 298 -11 317 143 129 14 chr4 41347352 41347422 -160980925 - MADE1 DNA Mariner -2 78 1 307 319 76 0 chr4 41348104 41348248 -160980099 - L2 LINE L2 -5 3308 3154 777 246 0 6 chr4 41348576 41348747 -160979600 + FRAM SINE Alu 1 164 -12 1029 148 7 0 chr4 41349018 41349173 -160979174 + AluJb SINE Alu 136 291 -21 514 213 33 0 chr4 41349537 41349659 -160978688 + MER5B DNA MER1_type 53 178 0 302 298 16 0 chr4 41349671 41349792 -160978555 + MER5B DNA MER1_type 3 125 -53 2847 71 5 14 chr4 41350599 41350966 -160977381 - THE1B LTR MaLR 0 364 1 751 115 0 0 chr4 41351709 41351813 -160976534 + MLT1C LTR MaLR 1 104 -363 1467 155 21 4 chr4 41351813 41352052 -160976295 - Tigger5 DNA MER2_type 0 2323 2081 365 241 0 13 chr4 41352046 41352125 -160976222 - Tigger5 DNA MER2_type -2245 78 1 * 1979 159 13 27 chr4 41352125 41352495 -160975852 + MLT1C LTR MaLR 103 467 0 1655 186 13 19 chr4 41353357 41353669 -160974678 - AluJb SINE Alu 0 312 3 237 259 207 46 chr4 41354162 41354336 -160974011 + MIR SINE MIR 47 248 -14 4254 143 106 1 chr4 41354922 41356276 -160972071 - pTR5 LTR ERV1 0 2606 1524 25 0 0 0 chr4 41356302 41356327 -160972020 + AT_rich Low_complexity Low_complexity 1 25 0 2301 116 0 3 chr4 41356369 41356680 -160971667 - AluSg SINE Alu 0 310 1 261 351 93 0 chr4 41357691 41357842 -160970505 + MIR SINE MIR 97 261 -1 562 311 52 4 chr4 41358267 41358515 -160969832 - MIR SINE MIR 0 262 3 705 224 23 0 chr4 41359113 41359287 -160969060 - MER96B DNA MER1_type? -239 178 1 281 359 39 0 chr4 41360478 41360581 -160967766 + L2 LINE L2 3121 3227 -45 183 200 0 0 chr4 41360746 41360781 -160967566 - MIR SINE MIR -55 153 119 2508 64 0 10 chr4 41361756 41362093 -160966254 - AluY SINE Alu 0 334 1 842 224 0 0 chr4 41362095 41362256 -160966091 - FRAM SINE Alu -5 161 1 24 0 0 0 chr4 41362623 41362647 -160965700 + AT_rich Low_complexity Low_complexity 1 24 0 1567 174 64 7 chr4 41362656 41362937 -160965410 + AluJb SINE Alu 1 297 -15 324 229 48 12 chr4 41362974 41363057 -160965290 - MIR SINE MIR -72 190 105 446 157 90 60 chr4 41363264 41363398 -160964949 - MER117 DNA MER1_type -27 170 33 342 0 0 0 chr4 41363487 41363525 -160964822 + (TGGA)n Simple_repeat Simple_repeat 3 40 0 459 286 141 5 chr4 41364613 41364812 -160963535 + MIR SINE MIR 27 252 -10 1401 244 48 11 chr4 41364884 41365319 -160963028 + L1 LINE L1 3223 3673 -2473 848 224 58 42 chr4 41365331 41365590 -160962757 + L2 LINE L2 3049 3311 -2 344 282 147 48 chr4 41365702 41365961 -160962386 - L2 LINE L2 -1262 2052 1735 2062 92 0 22 chr4 41365961 41366233 -160962114 + AluY SINE Alu 1 266 -45 344 282 147 48 chr4 41366233 41366388 -160961959 - L2 LINE L2 -1579 1735 1597 2079 87 80 0 chr4 41366928 41367215 -160961132 - AluSg SINE Alu 0 310 1 420 181 143 29 chr4 41368510 41368615 -160959732 - L2 LINE L2 0 3313 3197 252 154 0 0 chr4 41369032 41369084 -160959263 + (TG)n Simple_repeat Simple_repeat 2 53 0 190 317 129 10 chr4 41369170 41369271 -160959076 + MIR SINE MIR 20 132 -130 554 294 47 19 chr4 41369297 41369511 -160958836 - MIR SINE MIR -22 240 21 625 207 41 0 chr4 41369595 41369716 -160958631 - MLT1J LTR MaLR -133 378 253 22 0 0 0 chr4 41369926 41369948 -160958399 + AT_rich Low_complexity Low_complexity 1 22 0 689 243 102 35 chr4 41369963 41370189 -160958158 - MLT1J LTR MaLR -270 241 1 1969 183 46 3 chr4 41371065 41371415 -160956932 + MLT1A1 LTR MaLR 1 365 0 274 274 210 6 chr4 41372640 41372797 -160955550 - MIR3 SINE MIR 0 208 20 569 312 98 0 chr4 41373047 41373262 -160955085 + MIR SINE MIR 8 243 -19 22 35 0 0 chr4 41373431 41373460 -160954887 + AT_rich Low_complexity Low_complexity 1 29 0 2023 150 0 3 chr4 41373512 41373819 -160954528 + AluSx SINE Alu 1 306 -6 770 246 103 88 chr4 41373829 41374227 -160954120 - MLT1J2 LTR MaLR -15 431 28 464 243 0 0 chr4 41374333 41374436 -160953911 - L2 LINE L2 0 3313 3211 393 246 31 23 chr4 41374477 41374607 -160953740 + MER69 DNA AcHobo 2395 2525 -1 390 206 152 49 chr4 41374608 41374792 -160953555 - L2 LINE L2 -97 3216 3014 334 300 43 21 chr4 41374805 41374945 -160953402 - L1ME LINE L1 -381 5740 5598 2062 145 10 0 chr4 41375223 41375526 -160952821 + AluSg SINE Alu 1 306 -4 405 293 21 21 chr4 41375526 41375666 -160952681 - MIR3 SINE MIR -33 175 36 186 192 0 39 chr4 41375789 41375841 -160952506 + MIR SINE MIR 174 223 -39 895 58 69 0 chr4 41376648 41376922 -160951425 + (TAGA)n Simple_repeat Simple_repeat 3 294 0 257 328 8 47 chr4 41377336 41377464 -160950883 - L2 LINE L2 -1 3271 3149 731 281 13 91 chr4 41377694 41378045 -160950302 - MLT1I LTR MaLR -1 408 102 263 372 107 30 chr4 41378102 41378328 -160950019 - L2 LINE L2 -385 2929 2722 2420 100 0 0 chr4 41378328 41378637 -160949710 + AluSx SINE Alu 1 309 -3 263 372 107 30 chr4 41378637 41378970 -160949377 - L2 LINE L2 -592 2722 2319 1877 198 117 5 chr4 41378970 41379390 -160948957 + MLT1C LTR MaLR 1 467 0 263 372 107 30 chr4 41379390 41379428 -160948919 - L2 LINE L2 -995 2319 2285 510 312 89 61 chr4 41379678 41380139 -160948208 - L2 LINE L2 -8 3305 2832 234 0 0 0 chr4 41380139 41380165 -160948182 + (TG)n Simple_repeat Simple_repeat 2 27 0 328 281 70 9 chr4 41380179 41380293 -160948054 - L2 LINE L2 -638 2676 2556 2425 174 21 2 chr4 41380962 41381386 -160946961 + MSTB1 LTR MaLR 1 432 0 241 292 0 52 chr4 41382385 41382481 -160945866 + L1ME4a LINE L1 5955 6045 -76 189 0 0 0 chr4 41383086 41383107 -160945240 + (CCCCCA)n Simple_repeat Simple_repeat 2 22 0 1305 194 69 22 chr4 41384501 41384584 -160943763 - MER33 DNA MER1_type -2261 324 246 2260 116 0 0 chr4 41384584 41384886 -160943461 + AluSc SINE Alu 1 302 -7 1305 194 69 22 chr4 41384886 41384908 -160943439 - MER33 DNA MER1_type -2339 246 226 941 252 132 22 chr4 41384908 41385265 -160943082 + MSTD LTR MaLR 1 396 0 1305 194 69 22 chr4 41385265 41385480 -160942867 - MER33 DNA MER1_type -2359 226 1 2288 184 44 0 chr4 41385631 41386039 -160942308 + MSTB LTR MaLR 1 426 0 2145 124 24 37 chr4 41386896 41387276 -160941071 + THE1C LTR MaLR 1 375 0 384 285 175 26 chr4 41388699 41389138 -160939209 - L2 LINE L2 -1 3312 2799 339 311 56 67 chr4 41389141 41389208 -160939139 + MLT1J LTR MaLR 5 71 -379 2412 72 0 20 chr4 41389208 41389514 -160938833 - AluSx SINE Alu -12 300 1 339 311 56 67 chr4 41389514 41389659 -160938688 + MLT1J LTR MaLR 71 175 -275 851 170 79 0 chr4 41389794 41389959 -160938388 + MER5A DNA MER1_type 12 189 0 1137 159 18 49 chr4 41389967 41390193 -160938154 - MER20 DNA MER1_type 0 219 1 313 243 40 81 chr4 41390203 41390351 -160937996 + MLT1J LTR MaLR 330 471 -40 418 255 59 39 chr4 41390390 41390543 -160937804 - L2 LINE L2 -511 2803 2648 350 234 175 36 chr4 41390547 41390684 -160937663 - L2 LINE L2 -809 2505 2350 288 271 0 24 chr4 41390777 41390862 -160937485 + L1MC4a LINE L1 5736 5818 -1990 2041 104 73 3 chr4 41390869 41391157 -160937190 + AluSc SINE Alu 1 308 -1 358 252 206 37 chr4 41391197 41391411 -160936936 + MIR SINE MIR 13 262 0 259 260 100 10 chr4 41391420 41391520 -160936827 + L1MC4a LINE L1 5829 5937 -1871 234 229 0 33 chr4 41392530 41392591 -160935756 + MIR SINE MIR 183 241 -21 266 288 127 67 chr4 41392822 41392883 -160935464 - L3 LINE CR1 -685 892 836 795 211 50 6 chr4 41392883 41393063 -160935284 - MER5A DNA MER1_type -1 188 1 266 288 127 67 chr4 41393063 41393316 -160935031 - L3 LINE CR1 -741 836 559 481 299 23 11 chr4 41393316 41393490 -160934857 - MER5B DNA MER1_type 0 178 3 342 263 66 29 chr4 41393588 41393725 -160934622 - L3 LINE CR1 -1102 475 334 229 283 150 0 chr4 41393811 41393931 -160934416 - MIR SINE MIR 0 262 125 1185 188 207 39 chr4 41395012 41395321 -160933026 - MLT1A1 LTR MaLR -4 361 1 248 235 134 84 chr4 41395531 41395650 -160932697 + L2 LINE L2 3155 3279 -34 904 248 178 9 chr4 41396636 41397079 -160931268 + Charlie7 DNA MER1_type 1803 2320 -292 1148 257 96 20 chr4 41398368 41398883 -160929464 + MLT2E LTR ERVL 7 608 -20 21 36 0 0 chr4 41400612 41400640 -160927707 + AT_rich Low_complexity Low_complexity 1 28 0 249 275 43 0 chr4 41401923 41401992 -160926355 + MLT1I LTR MaLR 330 401 -8 624 156 0 0 chr4 41402715 41402824 -160925523 + (CA)n Simple_repeat Simple_repeat 2 110 0 33602 46 5 3 chr4 41404694 41405587 -160922760 + L1PA5 LINE L1 1251 2141 -4013 2439 80 0 7 chr4 41405587 41405889 -160922458 + AluY SINE Alu 1 300 -11 33602 46 5 3 chr4 41405889 41409890 -160918457 + L1PA5 LINE L1 2141 6149 -5 684 226 0 0 chr4 41410202 41410326 -160918021 - FLAM_A SINE Alu -8 125 2 231 214 233 48 chr4 41411418 41411521 -160916826 + LTR67 LTR ERVL 429 550 -7 418 264 33 8 chr4 41411554 41411675 -160916672 - L2 LINE L2 0 3313 3190 469 301 36 107 chr4 41411913 41412019 -160916328 - L2 LINE L2 -38 3234 3122 1468 134 157 23 chr4 41412019 41412318 -160916029 + MER44D DNA MER2_type 1 609 0 469 301 36 107 chr4 41412318 41412659 -160915688 - L2 LINE L2 -150 3122 2819 532 323 164 15 chr4 41412761 41413229 -160915118 - L2 LINE L2 -611 2703 2166 1446 235 10 35 chr4 41413274 41413642 -160914705 + MLT1I LTR MaLR 48 409 0 351 0 0 0 chr4 41414951 41414990 -160913357 + (TG)n Simple_repeat Simple_repeat 2 40 0 283 222 17 28 chr4 41415054 41415230 -160913117 + (TATATG)n Simple_repeat Simple_repeat 1 174 0 2082 122 30 7 chr4 41415343 41415647 -160912700 - AluSx SINE Alu -1 311 1 358 264 179 0 chr4 41415713 41415853 -160912494 + MIR3 SINE MIR 36 200 -8 2357 87 0 0 chr4 41416647 41416936 -160911411 + AluSg SINE Alu 1 289 -21 1900 136 21 14 chr4 41417026 41417343 -160911004 + AluSx SINE Alu 1 288 -24 1496 207 7 17 chr4 41417796 41418086 -160910261 + AluJo SINE Alu 1 287 -25 1019 262 119 12 chr4 41418137 41418473 -160909874 - L1ME3A LINE L1 -235 5935 5564 201 301 27 0 chr4 41418486 41418559 -160909788 + CT-rich Low_complexity Low_complexity 1 75 0 257 250 12 24 chr4 41418866 41418950 -160909397 + MER5A DNA MER1_type 1 83 -106 734 203 31 12 chr4 41420231 41420394 -160907953 - MIR SINE MIR -28 234 69 984 139 0 26 chr4 41420498 41420649 -160907698 - FAM SINE Alu -21 164 18 2116 139 0 7 chr4 41421272 41421582 -160906765 - AluSx SINE Alu -4 308 1 238 309 94 54 chr4 41421914 41422063 -160906284 + MER91A DNA MER1_type 25 179 -17 25 31 0 0 chr4 41422571 41422603 -160905744 + AT_rich Low_complexity Low_complexity 1 32 0 239 194 43 32 chr4 41422608 41422701 -160905646 + L1ME4a LINE L1 6006 6099 -22 687 92 4 5 chr4 41422707 41422968 -160905379 - AluSc SINE Alu -4 305 12 378 207 80 0 chr4 41423370 41423474 -160904873 + MIR SINE MIR 85 199 -63 1802 168 14 1 chr4 41423478 41423797 -160904550 + L1MB3 LINE L1 5593 5918 -265 7928 43 4 8 chr4 41423798 41424741 -160903606 + LTR13 LTR ERVK 69 1007 0 2227 103 0 3 chr4 41424825 41425116 -160903231 + AluSx SINE Alu 1 290 -22 1903 151 0 27 chr4 41425145 41425444 -160902903 + AluJb SINE Alu 1 291 -21 481 228 158 25 chr4 41425687 41425845 -160902502 + MER5A DNA MER1_type 10 188 -1 2478 73 13 0 chr4 41426755 41427058 -160901289 - AluSp SINE Alu -6 307 1 2183 123 7 0 chr4 41427181 41427481 -160900866 - AluSp SINE Alu -11 302 1 262 277 0 0 chr4 41427481 41427546 -160900801 + MER5B DNA MER1_type 114 178 0 2169 136 19 30 chr4 41428068 41428436 -160899911 + THE1B LTR MaLR 1 364 0 182 254 0 0 chr4 41429179 41429234 -160899113 - L2 LINE L2 -293 2979 2925 2586 177 36 10 chr4 41429437 41429933 -160898414 + L1MB7 LINE L1 5657 6165 -19 2009 132 7 16 chr4 41430034 41430337 -160898010 + AluSq SINE Alu 1 300 -13 183 129 0 0 chr4 41430390 41430421 -160897926 + (TAG)n Simple_repeat Simple_repeat 3 33 0 2473 93 0 0 chr4 41432156 41432467 -160895880 - AluSx SINE Alu -1 311 1 1233 73 101 11 chr4 41432869 41433048 -160895299 + L1PA6 LINE L1 5958 6152 -2 346 264 36 9 chr4 41433475 41433585 -160894762 + MIR3 SINE MIR 68 180 -28 2060 125 14 0 chr4 41433633 41433948 -160894399 + AluSx SINE Alu 1 319 0 298 215 76 13 chr4 41434544 41434623 -160893724 - MIR SINE MIR -102 160 77 220 208 19 0 chr4 41434889 41434942 -160893405 + GA-rich Low_complexity Low_complexity 3 56 0 271 136 0 30 chr4 41435801 41435867 -160892480 + (GGGGA)n Simple_repeat Simple_repeat 5 68 0 1653 234 79 16 chr4 41436639 41437139 -160891208 - MLT1F1 LTR MaLR -1 566 25 8280 44 11 4 chr4 41437141 41438141 -160890206 + LTR13 LTR ERVK 1 1007 0 2227 103 0 3 chr4 41438225 41438516 -160889831 + AluSx SINE Alu 1 290 -22 1903 151 0 27 chr4 41438545 41438844 -160889503 + AluJb SINE Alu 1 291 -21 499 207 120 45 chr4 41439081 41439247 -160889100 + MER5A DNA MER1_type 4 188 -1 723 200 91 78 chr4 41440110 41440430 -160887917 + L1M4 LINE L1 5045 5368 -778 330 264 194 8 chr4 41440661 41440790 -160887557 + L2 LINE L2 3107 3259 -13 183 260 20 0 chr4 41441166 41441216 -160887131 + MIR3 SINE MIR 149 199 -9 2581 63 0 0 chr4 41441260 41441562 -160886785 - AluSq SINE Alu -11 302 1 495 209 11 0 chr4 41441686 41441777 -160886570 + MLT1A1 LTR MaLR 274 365 0 450 231 0 0 chr4 41443808 41443925 -160884422 + (CA)n Simple_repeat Simple_repeat 1 117 0 467 221 133 65 chr4 41443934 41444005 -160884342 - MIR SINE MIR -10 252 187 2700 49 0 0 chr4 41444005 41444311 -160884036 - AluY SINE Alu -5 306 1 467 221 133 65 chr4 41444311 41444443 -160883904 - MIR SINE MIR -75 187 36 232 98 0 0 chr4 41444458 41444499 -160883848 + MADE1 DNA Mariner 40 80 0 210 233 17 50 chr4 41444752 41444812 -160883535 + L2 LINE L2 3246 3303 -10 439 298 21 0 chr4 41445555 41445746 -160882601 - L1ME LINE L1 -317 5804 5610 2149 112 6 13 chr4 41445792 41446104 -160882243 - AluSx SINE Alu -2 310 1 602 263 86 17 chr4 41446813 41447045 -160881302 + LTR33 LTR ERVL 21 268 -253 2205 181 29 84 chr4 41447111 41447697 -160880650 + MLT2B3 LTR ERVL 1 554 0 309 240 60 20 chr4 41447716 41447816 -160880531 + LTR33 LTR ERVL 410 513 -8 426 217 0 11 chr4 41448047 41448139 -160880208 - L2 LINE L2 0 3313 3223 1941 157 0 10 chr4 41448374 41448680 -160879667 - AluJo SINE Alu -9 303 1 2169 114 3 3 chr4 41449403 41449701 -160878646 + AluSg SINE Alu 1 298 -12 2125 141 0 0 chr4 41450704 41451010 -160877337 + AluSx SINE Alu 1 306 -6 480 237 69 91 chr4 41451010 41451182 -160877165 + Charlie8 DNA MER1_type 48 215 -115 2411 88 0 7 chr4 41451182 41451488 -160876859 + AluSg1 SINE Alu 1 304 -5 480 237 69 91 chr4 41451488 41451547 -160876800 + Charlie8 DNA MER1_type 215 274 -56 197 311 33 44 chr4 41451554 41451644 -160876703 - MIR SINE MIR -90 118 30 1512 145 4 0 chr4 41452531 41452765 -160875582 - AluSg/x SINE Alu -7 303 69 331 258 98 89 chr4 41453202 41453427 -160874920 - L1M4 LINE L1 -1978 4168 3942 1743 177 128 41 chr4 41453428 41453524 -160874823 - LOR1b LTR ERV1 0 461 375 2103 108 47 0 chr4 41453524 41453821 -160874526 - AluY SINE Alu 0 311 1 1743 177 128 41 chr4 41453821 41454137 -160874210 - LOR1b LTR ERV1 -86 375 13 2196 130 0 0 chr4 41454240 41454547 -160873800 - AluSx SINE Alu -5 307 1 399 253 41 36 chr4 41454552 41454746 -160873601 - L1M4 LINE L1 -2365 3781 3587 302 256 87 99 chr4 41454765 41455077 -160873270 - L1M4 LINE L1 -2629 3517 3210 829 183 16 52 chr4 41455077 41455268 -160873079 - AluJo SINE Alu -3 309 126 2525 63 0 7 chr4 41455351 41455653 -160872694 - AluY SINE Alu -11 300 1 397 279 26 19 chr4 41455887 41456041 -160872306 - L1MEd LINE L1 -5961 158 4 2159 115 7 10 chr4 41456798 41457103 -160871244 - AluSg SINE Alu -6 304 1 815 297 81 44 chr4 41457106 41457624 -160870723 - L1MC4a LINE L1 -303 5818 5352 23 54 0 0 chr4 41457730 41457767 -160870580 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr4 41457927 41457949 -160870398 + AT_rich Low_complexity Low_complexity 1 22 0 260 276 35 0 chr4 41458317 41458404 -160869943 + MIR SINE MIR 3 92 -170 787 142 12 31 chr4 41458441 41458603 -160869744 - THE1C LTR MaLR -21 354 196 243 0 0 0 chr4 41458724 41458751 -160869596 + (T)n Simple_repeat Simple_repeat 1 27 0 382 238 12 0 chr4 41458877 41458957 -160869390 + MER5A DNA MER1_type 9 89 -100 291 284 32 0 chr4 41459557 41459652 -160868695 - L2 LINE L2 -24 3289 3192 567 96 64 8 chr4 41460115 41460240 -160868107 + CT-rich Low_complexity Low_complexity 6 137 0 2078 133 0 27 chr4 41460397 41460698 -160867649 - AluSx SINE Alu -19 293 1 210 368 21 21 chr4 41460837 41460981 -160867366 + MIR3 SINE MIR 42 185 -23 377 295 168 6 chr4 41461318 41461491 -160866856 + MIR SINE MIR 48 248 -14 2145 111 3 7 chr4 41461502 41461829 -160866518 + AluSx SINE Alu 1 312 0 286 300 41 59 chr4 41462160 41462330 -160866017 - MIR SINE MIR -65 197 31 230 265 0 0 chr4 41462547 41462596 -160865751 + (TATATG)n Simple_repeat Simple_repeat 4 52 0 21 0 0 0 chr4 41462941 41462962 -160865385 + AT_rich Low_complexity Low_complexity 1 21 0 33 43 0 0 chr4 41464124 41464171 -160864176 + AT_rich Low_complexity Low_complexity 1 47 0 505 282 56 45 chr4 41464283 41464638 -160863709 - L1ME4a LINE L1 -91 6030 5672 914 124 8 0 chr4 41464871 41465000 -160863347 - FLAM_C SINE Alu -3 130 1 272 286 114 29 chr4 41466115 41466220 -160862127 - MIR3 SINE MIR -23 185 72 458 258 30 15 chr4 41467533 41467665 -160860682 - MER5A DNA MER1_type 0 189 56 25 0 0 0 chr4 41468976 41469001 -160859346 + AT_rich Low_complexity Low_complexity 1 25 0 1860 280 135 31 chr4 41469078 41469749 -160858598 + L2 LINE L2 1923 2523 -790 1853 69 53 4 chr4 41469749 41469996 -160858351 - AluY SINE Alu -15 296 38 1860 280 135 31 chr4 41469996 41470571 -160857776 + L2 LINE L2 2523 3301 -12 2099 212 54 17 chr4 41470633 41471152 -160857195 + MLT1F LTR MaLR 3 540 -2 238 125 214 0 chr4 41471169 41471225 -160857122 + MLT1F-int LTR MaLR 2 69 -1302 273 260 185 34 chr4 41472583 41472662 -160855685 + MER5A DNA MER1_type 22 88 -101 2703 45 0 3 chr4 41472662 41472971 -160855376 - AluY SINE Alu -3 308 1 273 260 185 34 chr4 41472971 41473037 -160855310 + MER5A DNA MER1_type 88 189 0 2386 156 68 29 chr4 41473260 41473746 -160854601 - MLT1D LTR MaLR 0 505 1 538 232 0 0 chr4 41473889 41474001 -160854346 - MER5A DNA MER1_type -77 112 1 1328 227 108 58 chr4 41474278 41474647 -160853700 + MLT1C LTR MaLR 1 397 -70 2561 71 0 3 chr4 41474647 41474955 -160853392 - AluSx SINE Alu -5 307 1 1328 227 108 58 chr4 41474955 41475030 -160853317 + MLT1C LTR MaLR 397 467 0 1095 218 4 27 chr4 41475349 41475574 -160852773 - MER58A DNA MER1_type 0 224 5 455 193 43 64 chr4 41476588 41476711 -160851636 - MIR SINE MIR -57 205 82 1982 143 167 19 chr4 41476711 41476897 -160851450 - MSTA LTR MaLR -2 426 269 180 0 0 0 chr4 41476897 41476917 -160851430 + (GA)n Simple_repeat Simple_repeat 1 20 0 1982 143 167 19 chr4 41476917 41477101 -160851246 - MSTA LTR MaLR -159 269 1 455 193 43 64 chr4 41477101 41477173 -160851174 - MIR SINE MIR -180 82 10 1617 188 0 14 chr4 41477607 41477921 -160850426 + AluJo SINE Alu 1 310 0 1880 225 118 6 chr4 41477982 41478458 -160849889 + MLT1H LTR MaLR 2 530 -19 281 253 50 66 chr4 41478491 41478673 -160849674 + L1MC1 LINE L1 5639 5817 -304 2050 121 74 6 chr4 41478829 41479152 -160849195 + L1MC1 LINE L1 5989 6333 0 2249 120 3 0 chr4 41479456 41479757 -160848590 - AluSx SINE Alu -10 302 1 2463 144 18 39 chr4 41479792 41479942 -160848405 - MSTA LTR MaLR 0 428 276 2399 54 0 10 chr4 41479942 41480236 -160848111 - AluY SINE Alu -19 292 2 2463 144 18 39 chr4 41480236 41480522 -160847825 - MSTA LTR MaLR -152 276 1 360 0 0 0 chr4 41480662 41480702 -160847645 + (TG)n Simple_repeat Simple_repeat 2 41 0 1282 194 53 106 chr4 41480762 41481359 -160846988 + L1MC5 LINE L1 6501 7065 -896 404 203 0 13 chr4 41481367 41481446 -160846901 - MLT1D LTR MaLR -421 84 7 322 315 138 7 chr4 41482812 41482961 -160845386 + MIR SINE MIR 17 182 -68 310 250 68 0 chr4 41483687 41483775 -160844572 - MER103 DNA DNA -51 115 22 516 260 67 0 chr4 41483877 41484027 -160844320 + LTR33 LTR ERVL 3 162 -359 542 236 76 0 chr4 41484084 41484228 -160844119 + LTR33 LTR ERVL 277 431 -90 205 273 45 11 chr4 41486718 41486806 -160841541 - MIR SINE MIR -70 192 102 281 297 49 22 chr4 41486811 41486996 -160841351 + MIR SINE MIR 53 242 -20 921 279 85 41 chr4 41488246 41488800 -160839547 - L1ME4a LINE L1 -216 5905 5320 649 220 45 34 chr4 41488932 41489109 -160839238 + MER97c DNA MER1_type? 1 179 -911 356 283 151 13 chr4 41489339 41489498 -160838849 - MER5A DNA MER1_type 0 189 9 626 246 31 66 chr4 41490412 41490640 -160837707 + MER58A DNA MER1_type 1 220 -4 216 157 214 14 chr4 41490737 41490807 -160837540 + MIR SINE MIR 93 176 -86 2173 133 3 0 chr4 41490818 41491120 -160837227 + AluSx SINE Alu 1 303 -9 1888 163 54 9 chr4 41492193 41492525 -160835822 + MER7A DNA MER2_type 1 345 -1 321 287 23 0 chr4 41495771 41495858 -160832489 - L2 LINE L2 -5 3308 3220 261 0 0 0 chr4 41496781 41496810 -160831537 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 231 237 34 0 chr4 41500621 41500680 -160827667 - L2 LINE L2 -4 3268 3208 343 309 120 42 chr4 41501843 41502202 -160826145 - L2 LINE L2 -5 3308 2922 505 208 71 56 chr4 41502217 41502429 -160825918 + MIR SINE MIR 10 234 -28 2229 114 0 3 chr4 41503110 41503418 -160824929 + AluSq SINE Alu 1 307 -6 204 97 0 0 chr4 41504431 41504462 -160823885 + (TG)n Simple_repeat Simple_repeat 2 32 0 1279 198 81 0 chr4 41504476 41504774 -160823573 - MER33 DNA MER1_type 0 324 3 909 222 6 0 chr4 41505220 41505387 -160822960 + MER45A DNA AcHobo 1 168 -10 336 203 14 54 chr4 41506738 41506812 -160821535 + Charlie1 DNA MER1_type 1 71 -2690 1111 173 112 46 chr4 41506812 41507206 -160821141 + Charlie1 DNA MER1_type 2342 2761 0 225 306 58 16 chr4 41508123 41508244 -160820103 + MER5A DNA MER1_type 37 162 -27 477 213 52 77 chr4 41508895 41509050 -160819297 - MER63 DNA MER1_type -59 777 1 207 0 0 0 chr4 41510904 41510927 -160817420 + (A)n Simple_repeat Simple_repeat 1 23 0 249 314 50 25 chr4 41512329 41512450 -160815897 - L2 LINE L2 -15 3298 3175 3397 156 7 4 chr4 41512518 41513071 -160815276 + L1PA16 LINE L1 5608 6162 -4 338 245 69 0 chr4 41513109 41513211 -160815136 + MIR SINE MIR 80 188 -74 2462 70 0 7 chr4 41513450 41513750 -160814597 + AluY SINE Alu 1 298 -13 451 214 0 2 chr4 41513850 41514019 -160814328 + MER2 DNA MER2_type 144 345 0 1816 175 3 7 chr4 41514795 41515103 -160813244 - AluJo SINE Alu -5 307 1 2314 40 0 0 chr4 41515452 41515725 -160812622 - L1PA4 LINE L1 -8 6147 5875 289 337 77 0 chr4 41516557 41516738 -160811609 - MIR SINE MIR -10 252 58 829 225 145 66 chr4 41517087 41517494 -160810853 + MLT1D LTR MaLR 5 390 0 540 206 38 23 chr4 41518154 41518285 -160810062 + MER94 DNA DNA 1 133 -1 450 324 140 8 chr4 41518879 41519129 -160809218 + L2 LINE L2 3028 3310 -3 2274 86 7 3 chr4 41522046 41522338 -160806009 + AluSg SINE Alu 1 293 -17 1640 176 33 3 chr4 41522564 41522866 -160805481 + AluJo SINE Alu 1 311 -1 2446 93 0 3 chr4 41523756 41524069 -160804278 - AluSp SINE Alu -1 312 1 235 354 55 40 chr4 41524284 41524682 -160803665 - L2 LINE L2 -667 2647 2244 304 283 52 58 chr4 41527043 41527216 -160801131 + MER5B DNA MER1_type 1 172 -6 2217 109 0 0 chr4 41527589 41527873 -160800474 + AluSx SINE Alu 5 288 -24 206 81 27 0 chr4 41527880 41527917 -160800430 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 2444 81 0 10 chr4 41528359 41528669 -160799678 + AluSc SINE Alu 1 307 -2 2619 47 3 0 chr4 41528671 41528970 -160799377 + AluY SINE Alu 1 300 -11 1258 127 122 0 chr4 41531033 41531238 -160797109 + MER30 DNA MER1_type 1 230 0 275 362 7 27 chr4 41531440 41531589 -160796758 - L3b LINE CR1 -68 1515 1370 4721 140 77 26 chr4 41531873 41532732 -160795615 - MER4D LTR ERV1 0 903 1 310 293 9 26 chr4 41532779 41532895 -160795452 + MIR3 SINE MIR 85 198 -10 227 318 55 39 chr4 41532965 41533104 -160795243 - MIR SINE MIR -38 170 28 299 309 41 0 chr4 41533172 41533269 -160795078 - MIR3 SINE MIR -21 187 87 228 243 105 116 chr4 41534095 41534276 -160794071 + MIR SINE MIR 73 251 -11 1944 115 59 0 chr4 41534731 41535019 -160793328 + AluSx SINE Alu 1 305 -7 331 195 12 61 chr4 41535159 41535241 -160793106 + MIR SINE MIR 64 141 -67 191 333 62 10 chr4 41535648 41535744 -160792603 + L2 LINE L2 3121 3221 -51 2058 117 7 0 chr4 41536208 41536522 -160791825 + AluSx SINE Alu 1 316 0 243 188 0 0 chr4 41536902 41536950 -160791397 + (TA)n Simple_repeat Simple_repeat 1 48 0 1955 196 138 19 chr4 41537576 41538039 -160790308 + MLT2B1 LTR ERVL 3 520 0 1783 289 122 40 chr4 41538116 41539590 -160788757 - L2 LINE L2 0 3313 1712 299 164 16 0 chr4 41539610 41539671 -160788676 + (TA)n Simple_repeat Simple_repeat 1 62 0 1491 233 10 0 chr4 41539671 41539959 -160788388 - AluSp SINE Alu -22 291 1 1537 219 16 30 chr4 41540363 41540733 -160787614 - MLT1A1 LTR MaLR 0 365 1 236 391 25 5 chr4 41541005 41541202 -160787145 + L3 LINE CR1 1269 1469 -108 316 297 59 0 chr4 41541289 41541407 -160786940 - L3 LINE CR1 -213 1364 1240 207 0 0 0 chr4 41542122 41542145 -160786202 + (A)n Simple_repeat Simple_repeat 1 23 0 281 189 0 0 chr4 41542240 41542293 -160786054 - MER33 DNA MER1_type -14 310 258 28 0 0 0 chr4 41542293 41542321 -160786026 + AT_rich Low_complexity Low_complexity 1 28 0 2619 101 32 10 chr4 41542327 41542732 -160785615 - L1MA3 LINE L1 0 6305 5892 1183 181 27 8 chr4 41542732 41542992 -160785355 - MER33 DNA MER1_type -54 270 6 22 0 0 0 chr4 41543078 41543100 -160785247 + AT_rich Low_complexity Low_complexity 1 22 0 1938 126 14 3 chr4 41544768 41545053 -160783294 + AluSx SINE Alu 1 288 -24 1099 116 7 0 chr4 41545743 41545890 -160782457 + AluSg/x SINE Alu 148 295 -17 2446 178 68 7 chr4 41545891 41546435 -160781912 + Charlie1 DNA MER1_type 2178 2754 -7 8417 108 25 29 chr4 41546492 41546829 -160781518 + HSMAR2 DNA Mariner 1 338 -964 2131 130 0 0 chr4 41546829 41547113 -160781234 + AluSx SINE Alu 1 284 -28 8417 108 25 29 chr4 41547113 41548081 -160780266 + HSMAR2 DNA Mariner 338 1301 -1 423 286 121 0 chr4 41549116 41549256 -160779091 - MIR SINE MIR -63 199 43 631 297 70 31 chr4 41549621 41550232 -160778115 + Charlie7 DNA MER1_type 7 682 -1930 496 235 168 0 chr4 41550308 41550457 -160777890 + MER5A DNA MER1_type 9 182 -7 2176 132 0 7 chr4 41551820 41552130 -160776217 + AluSx SINE Alu 1 308 -4 211 339 33 33 chr4 41552921 41553042 -160775305 - MIR3 SINE MIR -16 192 72 213 319 14 0 chr4 41553141 41553210 -160775137 + MIR SINE MIR 77 146 -116 2138 100 0 48 chr4 41553350 41553486 -160774861 + AluSq SINE Alu 1 142 -171 2508 70 0 10 chr4 41553486 41553787 -160774560 + AluY SINE Alu 1 298 -13 2138 100 0 48 chr4 41553787 41553960 -160774387 + AluSq SINE Alu 142 295 -18 942 177 135 15 chr4 41554200 41554460 -160773887 - MER5C DNA MER1_type -1 323 33 456 274 98 12 chr4 41554533 41554697 -160773650 - MIR SINE MIR -79 183 6 192 254 153 25 chr4 41555375 41555493 -160772854 + L2 LINE L2 2442 2574 -740 393 224 84 35 chr4 41555604 41555747 -160772600 - L3 LINE CR1 -195 1382 1233 24 0 0 0 chr4 41556189 41556213 -160772134 + AT_rich Low_complexity Low_complexity 1 24 0 288 143 0 41 chr4 41557277 41557326 -160771021 + AluSp SINE Alu 120 166 -137 2185 130 0 0 chr4 41557455 41557762 -160770585 + AluSx SINE Alu 1 307 -5 1883 148 0 11 chr4 41558458 41558742 -160769605 - AluJb SINE Alu -31 281 1 196 349 18 28 chr4 41558769 41558878 -160769469 - MIR SINE MIR -147 115 8 23 33 0 0 chr4 41558899 41558929 -160769418 + AT_rich Low_complexity Low_complexity 1 30 0 1894 219 87 15 chr4 41559156 41559676 -160768671 + L1MB8 LINE L1 5622 6178 0 2391 55 0 39 chr4 41559937 41560286 -160768061 - AluY SINE Alu 0 338 2 470 261 19 6 chr4 41561280 41561437 -160766910 - MIR SINE MIR -15 247 89 593 288 74 93 chr4 41562020 41562547 -160765800 - L3 LINE CR1 -816 761 245 252 77 0 0 chr4 41562996 41563035 -160765312 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 477 286 49 5 chr4 41563235 41563420 -160764927 + MIR SINE MIR 16 208 -54 556 274 61 74 chr4 41563489 41563868 -160764479 + MLT1H LTR MaLR 29 402 -147 232 259 99 25 chr4 41563836 41563917 -160764430 + MLT1I LTR MaLR 281 367 -42 * 479 340 57 39 chr4 41564240 41564522 -160763825 - L2 LINE L2 -1 3312 3026 2092 108 0 0 chr4 41565063 41565332 -160763015 + AluSg SINE Alu 1 269 -41 368 255 201 7 chr4 41565426 41565575 -160762772 - MER5A DNA MER1_type -1 188 11 2258 91 0 0 chr4 41566102 41566387 -160761960 + AluSx SINE Alu 12 296 -16 544 292 68 68 chr4 41566437 41566910 -160761437 - L2 LINE L2 0 3313 2841 522 310 50 25 chr4 41568375 41568617 -160759730 + MIR SINE MIR 12 259 -3 735 75 83 8 chr4 41570580 41570679 -160757668 + MER30 DNA MER1_type 1 112 -118 216 0 0 0 chr4 41570679 41570703 -160757644 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 735 75 83 8 chr4 41570703 41570723 -160757624 + MER30 DNA MER1_type 112 129 -101 234 270 36 102 chr4 41571341 41571478 -160756869 + MIR3 SINE MIR 35 162 -46 527 139 66 209 chr4 41571717 41571961 -160756386 + MER3 DNA MER1_type 1 209 0 2355 74 3 14 chr4 41573390 41573686 -160754661 + AluSc SINE Alu 1 293 -16 1779 161 7 16 chr4 41573932 41574236 -160754111 + AluJo SINE Alu 1 301 -11 182 365 28 9 chr4 41574485 41574592 -160753755 + MIR SINE MIR 14 122 -140 2229 102 0 13 chr4 41574616 41574919 -160753428 + AluSx SINE Alu 3 301 -11 304 237 53 61 chr4 41575181 41575295 -160753052 + MER5A DNA MER1_type 77 189 0 500 104 0 104 chr4 41575320 41575416 -160752931 + AluS SINE Alu 5 90 -222 581 313 30 30 chr4 41576304 41576537 -160751810 - MIR SINE MIR 0 262 30 1062 68 0 0 chr4 41576546 41576679 -160751668 - AluSp/q SINE Alu -5 308 176 236 191 0 0 chr4 41577160 41577207 -160751140 - L2 LINE L2 -2 3311 3265 597 258 46 94 chr4 41577340 41577669 -160750678 + MLT1I LTR MaLR 72 384 -25 206 195 0 0 chr4 41578176 41578217 -160750130 - L2 LINE L2 -9 3304 3264 515 236 42 35 chr4 41579347 41579491 -160748856 - MIR SINE MIR -53 209 65 246 241 0 0 chr4 41581409 41581463 -160746884 - MER91B DNA MER1_type -136 54 1 267 164 127 0 chr4 41581729 41581784 -160746563 - HAL1 LINE L1 -2004 503 442 262 194 16 32 chr4 41581784 41581846 -160746501 + LTR49 LTR ERV1 459 519 -76 761 264 139 11 chr4 41581911 41582191 -160746156 - HAL1 LINE L1 -2107 400 85 1894 122 4 0 chr4 41582202 41582457 -160745890 + AluSx SINE Alu 1 256 -56 22 0 0 0 chr4 41582457 41582479 -160745868 + AT_rich Low_complexity Low_complexity 1 22 0 2168 118 3 0 chr4 41583108 41583397 -160744950 - AluSx SINE Alu -22 290 1 1685 285 93 25 chr4 41583596 41583948 -160744399 - L2 LINE L2 -5 3308 2981 2329 99 0 3 chr4 41583948 41584260 -160744087 + AluSx SINE Alu 1 311 -1 1685 285 93 25 chr4 41584260 41584857 -160743490 - L2 LINE L2 -332 2981 2268 1911 146 9 44 chr4 41584860 41585181 -160743166 + AluSx SINE Alu 1 310 -2 2350 179 179 0 chr4 41585232 41585680 -160742667 + MLT1A1-int LTR MaLR 1208 1735 0 774 167 35 14 chr4 41585680 41585824 -160742523 + MLT1A1 LTR MaLR 1 147 -218 2109 138 0 13 chr4 41586637 41586948 -160741399 - AluSx SINE Alu -5 307 1 312 27 0 0 chr4 41587893 41587930 -160740417 + (CCA)n Simple_repeat Simple_repeat 2 38 0 2239 114 7 7 chr4 41587945 41588253 -160740094 - AluSg SINE Alu -2 308 1 2230 116 3 0 chr4 41588802 41589103 -160739244 + AluSg SINE Alu 1 302 -8 210 209 0 0 chr4 41589371 41589414 -160738933 - L2 LINE L2 -216 3056 3014 315 214 351 15 chr4 41589494 41589625 -160738722 - MER5A DNA MER1_type -6 183 9 2379 59 0 3 chr4 41589992 41590302 -160738045 + AluY SINE Alu 1 309 0 503 293 129 24 chr4 41591003 41591337 -160737010 - L2 LINE L2 -18 3295 2927 860 203 127 38 chr4 41591445 41591682 -160736665 + MIR SINE MIR 5 262 0 205 280 13 13 chr4 41591883 41591958 -160736389 + L2 LINE L2 2440 2514 -800 2200 102 0 3 chr4 41591984 41592297 -160736050 - AluSx SINE Alu 0 312 1 1479 216 90 29 chr4 41592520 41593007 -160735340 - LTR33A LTR ERVL 0 523 7 4324 85 2 0 chr4 41593022 41593575 -160734772 + MER41A LTR ERV1 1 554 0 23 0 0 0 chr4 41594388 41594411 -160733936 + AT_rich Low_complexity Low_complexity 1 23 0 783 292 16 20 chr4 41594657 41594962 -160733385 + L1ME4a LINE L1 5546 5849 -272 249 167 0 0 chr4 41595008 41595044 -160733303 + Alu SINE Alu 136 171 -131 1332 167 4 43 chr4 41595044 41595156 -160733191 + 7SLRNA srpRNA srpRNA 75 175 -145 2324 108 0 0 chr4 41595156 41595462 -160732885 + AluSg SINE Alu 1 306 -4 1332 167 4 43 chr4 41595462 41595582 -160732765 + 7SLRNA srpRNA srpRNA 175 298 -22 319 241 0 27 chr4 41595596 41595671 -160732676 + L1ME4a LINE L1 5985 6058 -63 751 158 47 8 chr4 41595671 41595798 -160732549 - FLAM_A SINE Alu -1 132 1 319 241 0 27 chr4 41595798 41595834 -160732513 + L1ME4a LINE L1 6058 6093 -28 309 179 150 29 chr4 41595900 41595916 -160732431 - L1MA10 LINE L1 0 6334 6319 2013 215 111 46 chr4 41595916 41596610 -160731737 - L1ME1 LINE L1 -5 6161 5423 2030 150 73 51 chr4 41596610 41596662 -160731685 + LOR1b LTR ERV1 1 50 -411 848 173 0 0 chr4 41596662 41596795 -160731552 - FLAM_C SINE Alu 0 133 1 2030 150 73 51 chr4 41596795 41597155 -160731192 + LOR1b LTR ERV1 50 422 -39 1443 189 44 19 chr4 41597157 41597551 -160730796 - L1ME1 LINE L1 -752 5394 5016 443 197 111 0 chr4 41597544 41597661 -160730686 - L1M4 LINE L1 -890 5256 5127 * 613 178 11 38 chr4 41597715 41597900 -160730447 + CT-rich Low_complexity Low_complexity 1 180 0 1137 121 17 6 chr4 41599141 41599314 -160729033 + AluSg/x SINE Alu 129 303 -9 2129 181 27 74 chr4 41599621 41600021 -160728326 + L1MB8 LINE L1 5674 6045 -133 2162 110 0 0 chr4 41600021 41600312 -160728035 + AluSx SINE Alu 14 304 -8 2129 181 27 74 chr4 41600312 41600435 -160727912 + L1MB8 LINE L1 6045 6172 -6 777 209 17 6 chr4 41600548 41600720 -160727627 + MER96 DNA MER1_type 2 175 0 181 271 0 68 chr4 41600966 41601025 -160727322 - MIR SINE MIR -179 83 29 180 211 90 115 chr4 41601788 41601944 -160726403 + MER5B DNA MER1_type 8 159 -19 297 239 261 0 chr4 41603060 41603190 -160725157 + MER5A DNA MER1_type 26 189 0 6310 84 8 0 chr4 41603392 41604220 -160724127 + L1PA10 LINE L1 5334 6168 0 475 306 73 13 chr4 41606044 41606276 -160722071 + MIR SINE MIR 17 262 0 213 245 71 52 chr4 41606598 41606753 -160721594 - L2 LINE L2 -308 3005 2848 218 339 142 0 chr4 41606906 41607033 -160721314 + L3 LINE CR1 618 762 -815 1793 167 4 0 chr4 41607129 41607410 -160720937 - AluJo SINE Alu -30 282 1 431 162 0 14 chr4 41607943 41608017 -160720330 + MER6 DNA MER2_type 793 865 0 260 310 9 18 chr4 41609213 41609326 -160719021 + MARNA DNA Mariner 284 395 -191 22 35 0 0 chr4 41610558 41610587 -160717760 + AT_rich Low_complexity Low_complexity 1 29 0 745 268 51 0 chr4 41610592 41610827 -160717520 - MIR SINE MIR -10 252 6 412 282 144 17 chr4 41610901 41611082 -160717265 - MIR SINE MIR -27 235 32 666 298 31 4 chr4 41611337 41611562 -160716785 + MIR SINE MIR 18 248 -14 234 331 24 39 chr4 41611629 41611756 -160716591 + L2 LINE L2 3188 3312 -1 2348 111 0 13 chr4 41612338 41612654 -160715693 - AluSx SINE Alu 0 312 1 597 260 83 0 chr4 41613080 41613261 -160715086 - MIR SINE MIR -14 248 54 239 298 262 0 chr4 41613307 41613448 -160714899 - MER5A DNA MER1_type -2 187 10 642 199 194 52 chr4 41613752 41613943 -160714404 - MER20 DNA MER1_type -1 218 1 2528 60 10 0 chr4 41615980 41616279 -160712068 + AluY SINE Alu 1 302 -9 684 306 55 4 chr4 41616458 41616693 -160711654 + MIR SINE MIR 16 262 0 307 238 0 38 chr4 41618056 41618136 -160710211 - MIR3 SINE MIR -24 184 108 303 264 101 8 chr4 41618144 41618273 -160710074 - MIR SINE MIR -11 251 111 484 237 48 38 chr4 41618375 41618561 -160709786 + MIR SINE MIR 58 245 -17 798 188 47 18 chr4 41620100 41620270 -160708077 + MER5A DNA MER1_type 6 180 -9 2027 125 3 14 chr4 41620474 41620771 -160707576 - AluSq SINE Alu -19 294 1 1703 171 35 49 chr4 41621412 41621780 -160706567 - MLT1A2 LTR MaLR -11 363 1 22 0 0 0 chr4 41622565 41622587 -160705760 + AT_rich Low_complexity Low_complexity 1 22 0 2628 85 33 3 chr4 41623804 41624168 -160704179 + THE1C LTR MaLR 1 375 0 2284 102 3 0 chr4 41625154 41625448 -160702899 + AluSg SINE Alu 1 295 -15 235 346 90 8 chr4 41626484 41626617 -160701730 - MIR SINE MIR -93 169 26 891 173 31 45 chr4 41626617 41626842 -160701505 + L1MB2 LINE L1 5286 5474 -706 3653 149 31 16 chr4 41626924 41627601 -160700746 + L1MB2 LINE L1 5483 6169 -2 3732 171 33 14 chr4 41629084 41629778 -160698569 + MER50 LTR ERV1 2 708 -26 253 95 0 0 chr4 41630594 41630636 -160697711 + Alu SINE Alu 259 300 -2 303 93 0 0 chr4 41630757 41630800 -160697547 + (CA)n Simple_repeat Simple_repeat 2 44 0 799 204 26 0 chr4 41631322 41631474 -160696873 - FRAM SINE Alu -9 157 2 196 277 252 8 chr4 41632518 41632637 -160695710 - MIR3 SINE MIR -7 201 54 182 231 110 55 chr4 41633862 41633953 -160694394 + MIR SINE MIR 65 160 -102 21 36 0 0 chr4 41634204 41634232 -160694115 + AT_rich Low_complexity Low_complexity 1 28 0 746 184 6 31 chr4 41635386 41635549 -160692798 + L1PA16 LINE L1 6008 6166 0 22 0 0 0 chr4 41635601 41635623 -160692724 + AT_rich Low_complexity Low_complexity 1 22 0 2236 80 0 27 chr4 41635637 41635937 -160692410 - AluY SINE Alu -19 292 1 21 0 0 0 chr4 41636364 41636385 -160691962 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 41636701 41636722 -160691625 + AT_rich Low_complexity Low_complexity 1 21 0 1063 203 48 0 chr4 41636934 41637141 -160691206 - MER58A DNA MER1_type -6 218 2 3618 187 81 14 chr4 41640669 41641438 -160686909 + L1MC1 LINE L1 5514 6333 0 232 234 50 106 chr4 41641920 41641945 -160686402 - MARNA DNA Mariner -211 375 350 2377 89 0 22 chr4 41641945 41642261 -160686086 - AluY SINE Alu -2 309 1 232 234 50 106 chr4 41642261 41642376 -160685971 - MARNA DNA Mariner -236 350 243 634 289 53 19 chr4 41642388 41642476 -160685871 + L1ME3A LINE L1 5943 6027 -143 2170 120 0 13 chr4 41642476 41642777 -160685570 - AluSx SINE Alu -15 297 1 634 289 53 19 chr4 41642777 41642896 -160685451 + L1ME3A LINE L1 6027 6157 -13 230 180 20 20 chr4 41643022 41643072 -160685275 + Alu SINE Alu 137 186 -115 938 210 0 0 chr4 41643195 41643362 -160684985 + FAM SINE Alu 1 167 -8 248 241 52 0 chr4 41643412 41643470 -160684877 + MARNA DNA Mariner 454 514 -72 2090 122 0 7 chr4 41645320 41645616 -160682731 + AluSg SINE Alu 1 294 -16 1249 85 50 50 chr4 41646449 41646523 -160681824 - MER30 DNA MER1_type -31 199 126 2212 101 10 0 chr4 41646523 41646819 -160681528 + AluSg SINE Alu 1 299 -11 1249 85 50 50 chr4 41646819 41646846 -160681501 - MER30 DNA MER1_type -104 126 100 213 65 0 0 chr4 41646846 41646877 -160681470 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1249 85 50 50 chr4 41646877 41646973 -160681374 - MER30 DNA MER1_type -129 101 1 1889 148 0 42 chr4 41647332 41647642 -160680705 - AluJb SINE Alu -14 298 2 407 272 75 14 chr4 41647683 41647830 -160680517 - MIR SINE MIR -9 253 98 246 262 0 0 chr4 41648535 41648596 -160679751 - MIR SINE MIR -61 147 87 256 286 85 45 chr4 41648799 41648998 -160679349 - MIR SINE MIR -6 256 50 3036 193 70 35 chr4 41650939 41651643 -160676704 + L1MB3 LINE L1 5440 6167 -16 1845 108 10 98 chr4 41651724 41652031 -160676316 - AluSx SINE Alu -14 298 19 282 269 62 21 chr4 41652562 41652707 -160675640 + MIR SINE MIR 107 257 -5 233 367 39 31 chr4 41652728 41652957 -160675390 + L2 LINE L2 1757 1987 -1327 192 333 0 0 chr4 41653069 41653123 -160675224 + L2 LINE L2 3194 3247 -25 2904 72 6 0 chr4 41653615 41653977 -160674370 + THE1B LTR MaLR 1 364 0 2146 123 30 0 chr4 41654479 41654779 -160673568 - AluSq SINE Alu -4 309 1 25 0 0 0 chr4 41655072 41655097 -160673250 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr4 41655227 41655249 -160673098 + AT_rich Low_complexity Low_complexity 1 22 0 248 339 151 0 chr4 41657979 41658197 -160670150 + L2 LINE L2 2563 2813 -501 334 309 120 50 chr4 41658303 41658604 -160669743 - L2 LINE L2 -50 3263 2942 * 527 313 167 19 chr4 41658603 41658974 -160669373 + L2 LINE L2 2885 3310 -3 2274 86 7 3 chr4 41661890 41662182 -160666165 + AluSg SINE Alu 1 293 -17 1675 176 33 0 chr4 41662408 41662709 -160665638 + AluJo SINE Alu 1 311 -1 2336 100 6 3 chr4 41663600 41663911 -160664436 - AluSp SINE Alu -1 312 1 235 354 55 40 chr4 41664126 41664524 -160663823 - L2 LINE L2 -667 2647 2244 304 283 52 58 chr4 41666885 41667058 -160661289 + MER5B DNA MER1_type 1 172 -6 2171 109 3 0 chr4 41667431 41667714 -160660633 + AluSx SINE Alu 5 288 -24 206 81 27 0 chr4 41667721 41667758 -160660589 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 2441 76 0 10 chr4 41668200 41668504 -160659843 + AluSc SINE Alu 1 301 -8 379 264 88 6 chr4 41670898 41671057 -160657290 + MIR SINE MIR 89 260 -2 1934 180 0 3 chr4 41671091 41671391 -160656956 - AluJb SINE Alu -13 299 1 1578 193 95 35 chr4 41671752 41672214 -160656133 - LTR54B LTR ERV1 -1 497 8 22 0 0 0 chr4 41672663 41672685 -160655662 + AT_rich Low_complexity Low_complexity 1 22 0 939 214 110 3 chr4 41672931 41673221 -160655126 - Charlie4a DNA MER1_type 0 508 188 227 204 0 23 chr4 41673254 41673298 -160655049 + MER21B LTR ERV1 41 83 -780 1820 214 90 84 chr4 41673377 41673739 -160654608 + MER21B LTR ERV1 98 457 -474 2320 75 0 0 chr4 41673739 41674046 -160654301 - AluY SINE Alu 0 307 1 1820 214 90 84 chr4 41674046 41674358 -160653989 + MER21B LTR ERV1 457 869 -62 602 145 16 32 chr4 41674372 41674410 -160653937 - Charlie4a DNA MER1_type -318 190 153 1296 133 87 5 chr4 41674410 41674628 -160653719 + MER46A DNA MER2_type 1 236 0 602 145 16 32 chr4 41674628 41674713 -160653634 - Charlie4a DNA MER1_type -355 153 69 2079 119 19 19 chr4 41675707 41676018 -160652329 - AluSq SINE Alu 0 313 3 293 229 110 18 chr4 41676177 41676286 -160652061 - MIR SINE MIR -12 250 132 21 0 0 0 chr4 41677399 41677420 -160650927 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr4 41677950 41677979 -160650368 + AT_rich Low_complexity Low_complexity 1 29 0 499 307 22 39 chr4 41678003 41678182 -160650165 - MER91A DNA MER1_type -18 178 3 440 358 25 37 chr4 41680077 41680320 -160648027 + L3 LINE CR1 878 1117 -460 580 168 11 0 chr4 41680442 41680537 -160647810 + AluJ/FLAM SINE Alu 2 97 -215 935 207 6 0 chr4 41680537 41680706 -160647641 + FRAM SINE Alu 1 40 0 2372 89 0 3 chr4 41681103 41681407 -160646940 + AluSx SINE Alu 1 303 -9 198 71 0 0 chr4 41681737 41681765 -160646582 + (TC)n Simple_repeat Simple_repeat 1 28 0 2458 91 3 0 chr4 41681882 41682191 -160646156 + AluSx SINE Alu 1 310 -2 2255 47 4 0 chr4 41682193 41682451 -160645896 + AluY SINE Alu 1 259 -52 238 111 0 0 chr4 41682757 41682793 -160645554 + MIR SINE MIR 198 233 -29 309 175 29 126 chr4 41683216 41683319 -160645028 + MLT1H LTR MaLR 457 549 0 2230 112 0 7 chr4 41683385 41683679 -160644668 + AluSx SINE Alu 1 292 -20 9355 218 61 43 chr4 41684422 41684733 -160643614 + L1ME1 LINE L1 2355 2659 -3507 2158 126 10 3 chr4 41684733 41685042 -160643305 - AluSq SINE Alu -2 311 1 9355 218 61 43 chr4 41685042 41686964 -160641383 + L1ME1 LINE L1 2659 4546 -1620 2241 96 20 0 chr4 41686964 41687267 -160641080 - AluY SINE Alu -2 309 1 1899 157 28 0 chr4 41687269 41687555 -160640792 - AluJb SINE Alu -18 294 1 9355 218 61 43 chr4 41687555 41688547 -160639800 + L1ME1 LINE L1 4546 5673 -493 2314 82 0 0 chr4 41688547 41688859 -160639488 - AluY SINE Alu 0 312 1 9355 218 61 43 chr4 41688859 41689307 -160639040 + L1ME1 LINE L1 5673 6112 -54 1846 146 7 4 chr4 41689314 41689594 -160638753 - AluJb SINE Alu -18 294 14 2151 151 43 3 chr4 41689720 41690072 -160638275 - MER47A DNA MER2_type 0 366 1 252 291 57 43 chr4 41690141 41690224 -160638123 + MIR3 SINE MIR 59 146 -62 1710 163 123 6 chr4 41690224 41690550 -160637797 - MLT1A1 LTR MaLR -1 364 1 252 291 57 43 chr4 41690550 41690607 -160637740 + MIR3 SINE MIR 146 201 -7 279 260 110 16 chr4 41690677 41690804 -160637543 - MIR SINE MIR -45 217 79 332 282 43 0 chr4 41691119 41691236 -160637111 - MIR SINE MIR -35 227 106 235 290 0 0 chr4 41691323 41691351 -160636996 + GA-rich Low_complexity Low_complexity 3 30 -41 2354 92 0 7 chr4 41691351 41691657 -160636690 + AluSg SINE Alu 1 304 -6 235 290 0 0 chr4 41691657 41691697 -160636650 + GA-rich Low_complexity Low_complexity 29 71 0 701 101 44 8 chr4 41691875 41692123 -160636224 + (CA)n Simple_repeat Simple_repeat 1 257 0 830 67 34 22 chr4 41692143 41692321 -160636026 + (CA)n Simple_repeat Simple_repeat 1 180 0 249 109 0 0 chr4 41692601 41692647 -160635700 + (TC)n Simple_repeat Simple_repeat 2 47 0 203 292 130 11 chr4 41692827 41692990 -160635357 + MIR SINE MIR 40 226 -36 350 258 21 75 chr4 41693673 41693859 -160634488 - L2 LINE L2 -598 2716 2541 2014 123 27 20 chr4 41693906 41694207 -160634140 - AluSq SINE Alu -9 304 2 447 222 17 8 chr4 41694260 41694377 -160633970 + L1M4 LINE L1 4132 4249 -1897 960 165 69 58 chr4 41744414 41744675 -160583672 - pTR5 LTR ERV1 -1432 1006 743 1642 86 108 4 chr4 41744675 41744907 -160583440 - LTR12 LTR ERV1 -406 308 53 248 269 0 0 chr4 41744907 41744959 -160583388 - LTR30 LTR ERV1 -670 52 1 3085 111 221 132 chr4 41746030 41747331 -160581016 + pTR5 LTR ERV1 1167 2438 0 1345 245 80 47 chr4 41748393 41748883 -160579464 - MLT1J LTR MaLR -5 506 1 546 214 54 36 chr4 41748884 41749052 -160579295 - MIR SINE MIR -61 201 31 430 115 29 29 chr4 41749917 41750021 -160578326 + CT-rich Low_complexity Low_complexity 3 106 0 432 67 0 0 chr4 41750068 41750128 -160578219 + (TG)n Simple_repeat Simple_repeat 2 61 0 263 65 0 0 chr4 41750130 41750161 -160578186 - U2 snRNA snRNA -152 36 6 183 80 0 0 chr4 41750785 41750810 -160577537 + (TCC)n Simple_repeat Simple_repeat 3 27 0 820 245 158 41 chr4 41751882 41752224 -160576123 + MLT1J1 LTR MaLR 17 431 -15 3463 139 22 17 chr4 41752357 41752812 -160575535 - L1MB3 LINE L1 -7 6176 5716 2391 155 46 10 chr4 41752812 41753225 -160575122 + MSTA LTR MaLR 1 428 0 3463 139 22 17 chr4 41753225 41753358 -160574989 - L1MB3 LINE L1 -467 5716 5585 2048 110 11 0 chr4 41753765 41754038 -160574309 + AluSx SINE Alu 10 285 -27 444 19 0 0 chr4 41754038 41754091 -160574256 + (CA)n Simple_repeat Simple_repeat 2 54 0 692 169 22 0 chr4 41755126 41755279 -160573068 + L1PA12 LINE L1 5918 6073 -95 363 208 14 0 chr4 41755387 41755459 -160572888 - MER5A DNA MER1_type -2 187 115 201 121 0 0 chr4 41755546 41755579 -160572768 + (CACCAT)n Simple_repeat Simple_repeat 1 33 0 516 262 13 13 chr4 41755643 41755792 -160572555 - MIR SINE MIR -101 161 13 189 0 0 0 chr4 41755920 41755941 -160572406 + (TTTC)n Simple_repeat Simple_repeat 2 22 0 1906 119 3 35 chr4 41755945 41756230 -160572117 - AluSx SINE Alu -36 276 1 377 294 12 25 chr4 41758017 41758180 -160570167 + MIR SINE MIR 31 191 -71 3904 91 16 44 chr4 41759511 41759635 -160568712 - MER41A LTR ERV1 0 554 428 1792 87 14 79 chr4 41759635 41759912 -160568435 + AluSx SINE Alu 35 293 -19 3904 91 16 44 chr4 41759912 41760357 -160567990 - MER41A LTR ERV1 -126 428 1 209 290 14 0 chr4 41760485 41760554 -160567793 - MIR SINE MIR -63 145 76 233 258 113 57 chr4 41760809 41761057 -160567290 - L1MC4a LINE L1 -1639 6169 5908 1740 166 17 84 chr4 41761552 41761942 -160566405 - MLT1B LTR MaLR -1 389 27 2162 104 10 0 chr4 41761942 41762231 -160566116 - AluSq SINE Alu -1 312 21 1740 166 17 84 chr4 41762231 41762257 -160566090 - MLT1B LTR MaLR -363 27 1 507 327 98 9 chr4 41765634 41765848 -160562499 - MIR SINE MIR 0 262 30 222 304 54 11 chr4 41765944 41766036 -160562311 - L2 LINE L2 -13 3300 3205 419 282 0 24 chr4 41766299 41766423 -160561924 + MIR SINE MIR 20 140 -122 1029 228 24 5 chr4 41766462 41766673 -160561674 - MER58A DNA MER1_type 0 224 10 198 200 0 0 chr4 41767219 41767259 -160561088 + L2 LINE L2 3273 3312 -1 181 387 32 26 chr4 41767429 41767481 -160560866 - L2 LINE L2 -852 2462 2412 1247 216 95 43 chr4 41767481 41767828 -160560519 - MLT1A1 LTR MaLR 0 365 1 181 387 32 26 chr4 41767828 41767930 -160560417 - L2 LINE L2 -902 2412 2307 235 292 84 4 chr4 41768976 41769091 -160559256 - MIR SINE MIR -77 131 26 216 0 0 0 chr4 41769334 41769358 -160558989 + (T)n Simple_repeat Simple_repeat 1 24 0 7502 193 10 22 chr4 41770559 41772400 -160555947 - L1P LINE L1 -1022 5124 3305 4413 212 7 1 chr4 41772395 41773400 -160554947 - L1PA15-16 LINE L1 -4040 2809 1799 * 1657 312 12 14 chr4 41773409 41773967 -160554380 - L1PA15-16 LINE L1 -6230 609 53 284 192 0 68 chr4 41773979 41774052 -160554295 - MLT1C LTR MaLR -346 121 54 387 338 82 28 chr4 41774657 41775045 -160553302 - LTR16C LTR ERVL -2 489 81 1943 158 20 0 chr4 41775079 41775376 -160552971 - AluJb SINE Alu -9 303 1 2184 80 19 15 chr4 41776542 41776866 -160551481 + THE1B LTR MaLR 40 364 0 670 286 72 10 chr4 41776909 41777213 -160551134 - MLT1L LTR MaLR -77 538 216 757 276 113 43 chr4 41777415 41777741 -160550606 + L1MC5 LINE L1 7272 7574 -387 2108 126 0 10 chr4 41777741 41778042 -160550305 + AluSx SINE Alu 1 298 -14 757 276 113 43 chr4 41778042 41778319 -160550028 + L1MC5 LINE L1 7574 7917 -44 2076 125 35 37 chr4 41778374 41778750 -160549597 - THE1C LTR MaLR 0 375 1 295 280 10 10 chr4 41779273 41779373 -160548974 - MLT1L LTR MaLR -483 132 33 623 177 24 6 chr4 41779574 41779738 -160548609 + CT-rich Low_complexity Low_complexity 2 168 0 1816 111 64 77 chr4 41781445 41781822 -160546525 - Tigger2 DNA MER2_type 0 2718 2347 611 211 0 0 chr4 41781821 41781949 -160546398 - Tigger2 DNA MER2_type -2590 128 1 * 4484 138 30 6 chr4 41782199 41782993 -160545354 + L1PA16 LINE L1 5259 6071 -95 912 235 154 10 chr4 41782996 41783307 -160545040 + MLT1C LTR MaLR 112 467 0 189 147 0 0 chr4 41783491 41783525 -160544822 + (TAATG)n Simple_repeat Simple_repeat 5 38 0 661 180 189 69 chr4 41783586 41783662 -160544685 - MIR SINE MIR -14 248 182 1983 107 11 4 chr4 41783662 41783969 -160544378 - AluSx SINE Alu 0 309 1 661 180 189 69 chr4 41783969 41784107 -160544240 - MIR SINE MIR -80 182 6 228 237 0 70 chr4 41784383 41784497 -160543850 + L1M4 LINE L1 4945 5050 -1096 203 184 0 0 chr4 41784513 41784551 -160543796 + T-rich Low_complexity Low_complexity 1 38 0 829 174 28 142 chr4 41784944 41785050 -160543297 - MER58A DNA MER1_type -2196 224 162 2269 103 3 3 chr4 41785050 41785350 -160542997 + AluSx SINE Alu 1 300 -12 829 174 28 142 chr4 41785350 41785496 -160542851 - MER58A DNA MER1_type -2258 162 1 820 223 27 5 chr4 41786298 41786522 -160541825 - MER97a DNA MER1_type? -607 287 59 258 32 0 0 chr4 41786561 41786592 -160541755 + (CA)n Simple_repeat Simple_repeat 1 31 0 2050 131 0 0 chr4 41788898 41789206 -160539141 + AluSx SINE Alu 1 308 0 2504 162 0 36 chr4 41789243 41789682 -160538665 + MSTC LTR MaLR 2 424 -4 976 168 6 28 chr4 41790027 41790206 -160538141 + FAM SINE Alu 1 175 0 345 263 115 32 chr4 41790522 41790678 -160537669 - MIR SINE MIR -42 220 52 639 248 132 15 chr4 41790678 41791044 -160537303 + LTR48 LTR ERV1 1 485 -302 417 182 104 6 chr4 41791077 41791216 -160537131 + LTR48 LTR ERV1 354 721 -36 383 241 102 24 chr4 41791284 41791450 -160536897 + LTR48 LTR ERV1 609 787 0 2246 128 0 3 chr4 41791702 41792061 -160536286 + AluSx SINE Alu 1 358 0 6279 228 58 25 chr4 41792297 41793000 -160535347 - L1P LINE L1 -1603 4543 3865 2064 92 28 0 chr4 41793000 41793283 -160535064 - AluY SINE Alu -20 291 1 6279 228 58 25 chr4 41793283 41794604 -160533743 - L1P LINE L1 -2281 3865 2452 669 250 65 13 chr4 41794602 41794944 -160533403 - L1ME LINE L1 -686 5476 5119 * 387 105 0 0 chr4 41794994 41795051 -160533296 + (TG)n Simple_repeat Simple_repeat 2 58 0 949 170 97 92 chr4 41795057 41795441 -160532906 - MLT2B1 LTR ERVL -42 478 1 755 224 10 15 chr4 41795506 41795702 -160532645 - L1ME LINE L1 -1217 4929 4735 1670 216 45 93 chr4 41795726 41796286 -160532061 - MLT1F LTR MaLR -9 533 1 268 270 0 0 chr4 41796286 41796360 -160531987 - L1ME LINE L1 -1407 4739 4666 934 209 16 0 chr4 41796372 41796704 -160531643 - AluJo SINE Alu 0 456 122 1041 254 82 11 chr4 41796704 41797169 -160531178 - L1ME LINE L1 -1491 4655 4158 914 196 38 5 chr4 41797169 41797353 -160530994 - MER58A DNA MER1_type -8 216 27 889 273 60 24 chr4 41797363 41797696 -160530651 + L1MC4 LINE L1 7557 7901 -141 252 281 0 31 chr4 41798231 41798295 -160530052 - L3 LINE CR1 -2 1575 1514 732 151 17 0 chr4 41798325 41798444 -160529903 - AluJo SINE Alu -181 121 1 595 127 37 124 chr4 41798452 41798630 -160529717 - L1M3 LINE L1 -571 5600 5428 1839 208 30 40 chr4 41798641 41799113 -160529234 + MLT1C LTR MaLR 1 467 0 325 282 0 0 chr4 41799250 41799321 -160529026 - L2 LINE L2 -4 3309 3239 2230 101 3 0 chr4 41800128 41800425 -160527922 + AluSg SINE Alu 12 309 -1 332 218 11 0 chr4 41800599 41800686 -160527661 + GA-rich Low_complexity Low_complexity 4 91 0 319 284 116 7 chr4 41801406 41801561 -160526786 + MIR SINE MIR 70 241 -21 262 355 40 24 chr4 41801674 41801798 -160526549 - MIR SINE MIR -133 129 4 1387 224 176 10 chr4 41801824 41802386 -160525961 - LTR50 LTR ERVL -2 793 87 222 348 96 15 chr4 41802548 41802683 -160525664 + L2 LINE L2 3127 3272 0 321 279 23 23 chr4 41803195 41803281 -160525066 - MIR3 SINE MIR -19 189 104 2244 115 0 0 chr4 41803383 41803678 -160524669 - AluSx SINE Alu -17 295 1 22 0 0 0 chr4 41803771 41803793 -160524554 + AT_rich Low_complexity Low_complexity 1 22 0 459 276 84 37 chr4 41804620 41804943 -160523404 - L1ME LINE L1 -399 5722 5385 255 276 184 20 chr4 41804948 41805046 -160523301 + L2 LINE L2 3195 3308 -5 197 378 0 0 chr4 41805277 41805351 -160522996 + MIR SINE MIR 49 122 -140 219 228 18 0 chr4 41807045 41807095 -160521252 + (CA)n Simple_repeat Simple_repeat 1 54 -4 2402 152 21 39 chr4 41807095 41807148 -160521199 + MSTC LTR MaLR 3 55 -373 2310 89 3 13 chr4 41807148 41807462 -160520885 + AluY SINE Alu 1 311 0 2402 152 21 39 chr4 41807462 41807842 -160520505 + MSTC LTR MaLR 55 428 0 219 228 18 0 chr4 41807842 41807848 -160520499 + (CA)n Simple_repeat Simple_repeat 54 58 0 197 307 32 75 chr4 41807914 41808064 -160520283 - MIR SINE MIR 0 262 74 1681 145 0 0 chr4 41808064 41808306 -160520041 - AluJb SINE Alu -22 290 49 197 307 32 75 chr4 41808306 41808376 -160519971 - MIR SINE MIR -188 74 3 1303 239 77 78 chr4 41808658 41809090 -160519257 + L1ME2 LINE L1 3226 3658 -2488 1834 151 7 26 chr4 41809090 41809395 -160518952 + AluJb SINE Alu 1 299 -13 1303 239 77 78 chr4 41809395 41809825 -160518522 + L1ME2 LINE L1 3658 4087 -2059 702 142 49 120 chr4 41809828 41809975 -160518372 - AluSg/x SINE Alu -22 288 155 4357 157 64 60 chr4 41809975 41811042 -160517305 - MER11C LTR ERVK 0 1071 1 702 142 49 120 chr4 41811042 41811077 -160517270 - AluSg/x SINE Alu -155 155 119 794 141 7 30 chr4 41811078 41811213 -160517134 - FLAM_C SINE Alu 0 133 2 1929 242 46 36 chr4 41811233 41812042 -160516305 + L1ME2 LINE L1 4112 4928 -1218 347 217 72 105 chr4 41812059 41812211 -160516136 + L1ME2 LINE L1 5160 5306 -840 1845 67 0 52 chr4 41812211 41812481 -160515866 + MER1A DNA MER1_type 136 391 -138 276 50 0 0 chr4 41812478 41812518 -160515829 - Charlie3 DNA MER1_type -92 2618 2579 * 252 105 26 0 chr4 41812528 41812566 -160515781 + Charlie3 DNA MER1_type 2668 2706 -4 1624 196 36 60 chr4 41812576 41813080 -160515267 + L1ME2 LINE L1 5650 6141 -23 1580 116 0 0 chr4 41813530 41813737 -160514610 - AluSg/x SINE Alu -12 300 94 1373 183 95 9 chr4 41813954 41814271 -160514076 + MLT1B LTR MaLR 47 390 0 265 261 102 64 chr4 41814438 41814595 -160513752 - MIR SINE MIR -72 190 28 531 251 29 82 chr4 41814738 41814908 -160513439 + MIR SINE MIR 57 216 -46 1585 175 11 118 chr4 41814908 41815372 -160512975 - MLT2D LTR ERVL 0 414 1 531 251 29 82 chr4 41815372 41815408 -160512939 + MIR SINE MIR 216 252 -10 28341 124 9 55 chr4 41815457 41821932 -160506415 - L1PA8 LINE L1 -1 6171 2 8149 28 1 0 chr4 41821965 41823079 -160505268 + L1PA3 LINE L1 5041 6155 0 393 329 79 30 chr4 41823744 41823908 -160504439 - L3 LINE CR1 -44 1533 1362 201 307 0 34 chr4 41823968 41824056 -160504291 + GA-rich Low_complexity Low_complexity 3 87 0 3136 219 29 38 chr4 41824139 41824946 -160503401 - L1ME1 LINE L1 -5 6230 5432 1118 238 44 47 chr4 41825054 41825437 -160502910 - L1ME1 LINE L1 -866 5349 4968 1104 301 48 15 chr4 41825457 41825918 -160502429 - L1ME1 LINE L1 -5885 511 36 43919 46 5 2 chr4 41826093 41832228 -160496119 - L1PA4 LINE L1 0 6155 1 668 75 25 108 chr4 41832359 41832436 -160495911 - L1PA13 LINE L1 -11 6152 6087 2276 105 3 7 chr4 41832436 41832742 -160495605 - AluSx SINE Alu -7 305 1 668 75 25 108 chr4 41832742 41832784 -160495563 - L1PA13 LINE L1 -76 6087 6043 198 267 100 0 chr4 41832962 41833022 -160495325 - L2 LINE L2 -228 3044 2979 543 240 8 0 chr4 41833429 41833550 -160494797 + Charlie8 DNA MER1_type 103 224 -2193 783 243 85 0 chr4 41833565 41833754 -160494593 - MER3 DNA MER1_type -4 205 1 237 33 0 0 chr4 41833950 41833980 -160494367 + (TG)n Simple_repeat Simple_repeat 2 31 0 327 78 0 0 chr4 41834425 41834476 -160493871 + (CA)n Simple_repeat Simple_repeat 2 52 0 214 280 93 5 chr4 41835125 41835248 -160493099 + MIR SINE MIR 19 160 -48 533 151 0 0 chr4 41835357 41835430 -160492917 + AluJ/FLAM SINE Alu 2 74 -238 261 0 0 0 chr4 41835453 41835482 -160492865 + (GAA)n Simple_repeat Simple_repeat 2 30 0 264 59 0 0 chr4 41835558 41835592 -160492755 + (A)n Simple_repeat Simple_repeat 1 34 0 264 256 12 37 chr4 41835601 41835683 -160492664 - MER5A DNA MER1_type 0 189 110 594 275 82 37 chr4 41835977 41836221 -160492126 + MER112 DNA MER1_type 2 256 0 675 278 9 54 chr4 41836976 41837199 -160491148 + MIR SINE MIR 28 240 -22 197 328 0 17 chr4 41837165 41837223 -160491124 + L2 LINE L2 3212 3268 -4 * 241 324 19 9 chr4 41837914 41838022 -160490325 + (TATG)n Simple_repeat Simple_repeat 4 112 0 1975 72 68 8 chr4 41838689 41838953 -160489394 + AluSp SINE Alu 6 285 -28 792 277 50 4 chr4 41839167 41839409 -160488938 + MIR SINE MIR 10 262 0 2375 145 45 5 chr4 41839440 41839840 -160488507 - MSTA LTR MaLR -1 427 12 224 170 21 0 chr4 41839841 41839888 -160488459 + (TTA)n Simple_repeat Simple_repeat 3 50 0 1127 191 30 0 chr4 41840189 41840388 -160487959 - MER3 DNA MER1_type -4 205 1 634 272 6 12 chr4 41840702 41840875 -160487472 + MER112 DNA MER1_type 4 175 -85 2317 136 19 32 chr4 41840914 41841283 -160487064 - THE1B LTR MaLR 0 364 1 12574 88 11 1 chr4 41841283 41842848 -160485499 - THE1B-int LTR MaLR 0 1580 1 2547 106 19 32 chr4 41842848 41843217 -160485130 - THE1B LTR MaLR 0 364 1 298 176 81 27 chr4 41843217 41843291 -160485056 + MER112 DNA MER1_type 183 260 0 879 264 63 21 chr4 41843295 41843579 -160484768 - MER102a DNA MER1_type -2 328 33 519 169 8 85 chr4 41844192 41844322 -160484025 - L1MD3 LINE L1 0 7995 7876 1041 218 0 36 chr4 41844324 41844544 -160483803 - MSTD LTR MaLR -1 395 184 2176 126 0 0 chr4 41844544 41844854 -160483493 - AluY SINE Alu -1 310 1 865 166 0 21 chr4 41844857 41845002 -160483345 - AluJo SINE Alu -170 142 1 1118 152 27 0 chr4 41845003 41845187 -160483160 - MSTD LTR MaLR -205 191 3 657 192 26 51 chr4 41845189 41845345 -160483002 - L1MD3 LINE L1 -116 7879 7728 192 308 0 0 chr4 41845568 41845620 -160482727 + L2 LINE L2 3254 3305 -8 2117 184 26 3 chr4 41845760 41846141 -160482206 - MLT1B LTR MaLR 0 390 1 658 314 31 23 chr4 41846574 41846924 -160481423 + MLT1F-int LTR MaLR 248 600 -771 682 290 59 108 chr4 41847131 41847838 -160480509 + MLT1F-int LTR MaLR 699 1371 0 511 291 29 23 chr4 41847839 41848011 -160480336 + MLT1F LTR MaLR 2 174 -368 10629 42 2 13 chr4 41848011 41849508 -160478839 + L1P2 LINE L1 4085 5565 -590 3388 243 38 30 chr4 41849813 41850348 -160477999 - MER21B LTR ERV1 -4 859 313 2255 88 3 36 chr4 41850348 41850653 -160477694 - AluY SINE Alu -16 295 1 3388 243 38 30 chr4 41850653 41850927 -160477420 - MER21B LTR ERV1 -550 313 43 345 291 0 0 chr4 41850925 41851004 -160477343 - MER21B LTR ERV1 -769 94 16 * 261 278 78 33 chr4 41851001 41851091 -160477256 - MER21B LTR ERV1 -758 105 12 * 5489 229 83 51 chr4 41851383 41853044 -160475303 + L1M3e LINE L1 7 1612 -5494 201 39 0 0 chr4 41853044 41853070 -160475277 + (CAA)n Simple_repeat Simple_repeat 1 26 0 5489 229 83 51 chr4 41853070 41855255 -160473092 + L1M3e LINE L1 1612 4783 -2323 1216 243 44 53 chr4 41855255 41855804 -160472543 - MER39 LTR ERV1 0 648 1 2294 181 38 15 chr4 41855804 41856280 -160472067 + L1M3e LINE L1 4780 5266 -1840 410 177 156 10 chr4 41856325 41856421 -160471926 - MER52A LTR ERV1 -743 1012 903 3062 220 173 42 chr4 41856423 41857400 -160470947 - MER52A LTR ERV1 -650 1105 1 2424 120 18 23 chr4 41857400 41857792 -160470555 + L1MA9 LINE L1 5914 6303 -9 5049 109 86 47 chr4 41858121 41858912 -160469435 + LTR12 LTR ERV1 5 826 0 2368 83 0 13 chr4 41858996 41859297 -160469050 - AluY SINE Alu -14 297 1 2155 110 0 38 chr4 41859504 41859821 -160468526 + AluSx SINE Alu 1 305 -7 1364 145 8 2 chr4 41860651 41860907 -160467440 + AluJo SINE Alu 1 300 -12 722 260 12 85 chr4 41861663 41861921 -160466426 - MIR SINE MIR -21 241 3 1853 213 83 120 chr4 41862021 41862230 -160466117 - L1MC5 LINE L1 -61 7900 7685 296 105 0 0 chr4 41862230 41862268 -160466079 - U2 snRNA snRNA -150 38 1 1853 213 83 120 chr4 41862268 41863078 -160465269 - L1MC5 LINE L1 -276 7685 6883 777 253 23 32 chr4 41863247 41863468 -160464879 + MIR SINE MIR 41 259 -3 345 275 57 82 chr4 41863529 41863845 -160464502 - L1ME4a LINE L1 -193 5928 5621 186 133 0 0 chr4 41864122 41864152 -160464195 + (A)n Simple_repeat Simple_repeat 1 30 0 219 300 67 33 chr4 41864335 41864425 -160463922 + MER91A DNA MER1_type 48 140 -56 201 213 49 98 chr4 41864455 41864516 -160463831 + MER91A DNA MER1_type 126 183 -13 314 279 163 58 chr4 41864794 41864984 -160463363 + MIR SINE MIR 5 214 -48 1353 225 64 89 chr4 41865811 41866482 -160461865 + L1MC5 LINE L1 7277 7930 -31 343 296 178 0 chr4 41866544 41866679 -160461668 + MIR SINE MIR 104 262 0 265 267 178 0 chr4 41867134 41867235 -160461112 + MIR SINE MIR 36 154 -108 647 271 168 19 chr4 41867257 41867471 -160460876 + MIR SINE MIR 17 262 0 1467 106 101 5 chr4 41869990 41870197 -160458150 + MER30 DNA MER1_type 4 230 0 198 306 32 0 chr4 41870217 41870279 -160458068 + MIR3 SINE MIR 111 174 -34 712 311 65 34 chr4 41870310 41870693 -160457654 + LTR16A LTR ERVL 56 450 0 500 213 55 24 chr4 41870693 41870808 -160457539 - LTR67 LTR ERVL -43 514 396 281 253 0 55 chr4 41870840 41870931 -160457416 - LTR67 LTR ERVL -467 90 5 1094 283 164 36 chr4 41871173 41872207 -160456140 + L2 LINE L2 2127 3312 -1 1301 201 88 64 chr4 41872281 41872688 -160455659 + Charlie4a DNA MER1_type 22 438 -70 1677 176 15 4 chr4 41872688 41872960 -160455387 + AluJb SINE Alu 1 275 -37 195 42 0 0 chr4 41872972 41872996 -160455351 + (TAA)n Simple_repeat Simple_repeat 2 25 0 244 133 44 0 chr4 41873079 41873124 -160455223 - MER3 DNA MER1_type 0 209 163 1501 167 0 44 chr4 41873208 41873483 -160454864 - AluJo SINE Alu -49 263 1 788 195 0 38 chr4 41873483 41873642 -160454705 - MER3 DNA MER1_type -29 180 28 1565 175 113 64 chr4 41875228 41875663 -160452684 + MLT1C LTR MaLR 6 461 -6 960 217 74 57 chr4 41877164 41877220 -160451127 + MLT1E LTR MaLR 1 55 -538 2342 64 0 3 chr4 41877220 41877538 -160450809 - AluY SINE Alu 0 317 1 960 217 74 57 chr4 41877538 41877951 -160450396 + MLT1E LTR MaLR 55 576 -17 667 261 16 96 chr4 41878280 41878471 -160449876 + L1ME4a LINE L1 5531 5687 -434 4944 131 7 4 chr4 41878471 41879206 -160449141 - L1PB4 LINE L1 -5 6151 5415 667 261 16 96 chr4 41879206 41879336 -160449011 + L1ME4a LINE L1 5687 5826 -295 899 161 19 37 chr4 41879346 41879508 -160448839 + FRAM SINE Alu 4 162 -14 304 285 139 30 chr4 41879665 41879830 -160448517 + L1ME4a LINE L1 5935 6117 -4 195 250 21 0 chr4 41880535 41880583 -160447764 - L2 LINE L2 -23 3249 3201 1448 226 33 9 chr4 41881037 41881374 -160446973 - LTR40b LTR ERVL -117 345 1 480 242 17 0 chr4 41881695 41881815 -160446532 - MIR SINE MIR -36 226 105 1987 123 0 46 chr4 41881911 41882235 -160446112 - AluSx SINE Alu -3 309 1 3811 135 25 22 chr4 41882301 41882900 -160445447 - MER7C DNA MER2_type -1 601 1 231 268 49 12 chr4 41883081 41883163 -160445184 + L2 LINE L2 3227 3311 -2 799 267 44 24 chr4 41883581 41883832 -160444515 - MIR SINE MIR -1 261 6 732 246 116 54 chr4 41884141 41884564 -160443783 + L1MC4 LINE L1 7594 8042 0 626 301 92 19 chr4 41884902 41885108 -160443239 + MIR SINE MIR 33 253 -9 186 133 0 0 chr4 41885838 41885868 -160442479 + (A)n Simple_repeat Simple_repeat 1 30 0 274 343 29 9 chr4 41886174 41886279 -160442068 - MIR SINE MIR -65 143 37 732 176 6 16 chr4 41889217 41889399 -160438948 + GA-rich Low_complexity Low_complexity 1 180 0 659 242 82 10 chr4 41889716 41889910 -160438437 + MIR SINE MIR 30 237 -25 188 301 41 14 chr4 41890160 41890233 -160438114 - MIR SINE MIR -154 108 34 957 81 16 0 chr4 41890694 41890817 -160437530 - AluSg/x SINE Alu -12 300 176 375 281 125 27 chr4 41891177 41891401 -160436946 - L1ME4a LINE L1 -29 6092 5847 904 254 61 20 chr4 41891422 41891717 -160436630 - L1ME4a LINE L1 -325 5796 5490 22 35 0 0 chr4 41891756 41891785 -160436562 + AT_rich Low_complexity Low_complexity 1 29 0 2363 111 60 20 chr4 41891794 41892144 -160436203 - THE1B LTR MaLR 0 364 1 440 256 130 72 chr4 41892179 41892386 -160435961 - MIR SINE MIR -14 248 30 505 302 31 9 chr4 41892461 41892686 -160435661 - LTR33 LTR ERVL 0 521 292 621 288 7 0 chr4 41892761 41892900 -160435447 - LTR33 LTR ERVL -356 165 26 248 315 33 0 chr4 41892991 41893083 -160435264 + MIR SINE MIR 168 262 0 483 275 67 96 chr4 41893251 41893470 -160434877 + MLT1J1 LTR MaLR 41 244 -202 2204 145 85 18 chr4 41893470 41893871 -160434476 + MSTA LTR MaLR 1 428 0 483 275 67 96 chr4 41893871 41894069 -160434278 + MLT1J1 LTR MaLR 244 446 0 2657 150 41 5 chr4 41894178 41894591 -160433756 + MSTA LTR MaLR 1 428 0 9707 165 43 11 chr4 41894591 41896003 -160432344 + MSTA-int LTR MaLR 1 1471 -180 2151 122 0 13 chr4 41896003 41896307 -160432040 - AluSg SINE Alu -10 300 1 9707 165 43 11 chr4 41896307 41896494 -160431853 + MSTA-int LTR MaLR 1471 1651 0 2584 138 59 5 chr4 41896494 41896900 -160431447 + MSTA LTR MaLR 1 428 0 318 252 34 5 chr4 41897077 41897222 -160431125 + MIR SINE MIR 21 245 -17 230 182 18 55 chr4 41897492 41897547 -160430800 + MIR SINE MIR 21 73 -189 552 42 0 0 chr4 41897816 41897887 -160430460 + (TGGA)n Simple_repeat Simple_repeat 4 74 0 2345 71 10 3 chr4 41898140 41898437 -160429910 + AluY SINE Alu 1 299 -12 189 229 229 0 chr4 41898611 41898672 -160429675 - MIR SINE MIR -23 239 165 321 297 7 11 chr4 41898711 41898851 -160429496 + MIR SINE MIR 19 214 -48 856 149 0 154 chr4 41898907 41899115 -160429232 - MER5B DNA MER1_type -1 177 2 266 236 42 29 chr4 41899499 41899604 -160428743 + MIR SINE MIR 43 148 -71 1922 118 14 0 chr4 41900166 41900445 -160427902 - AluSx SINE Alu -29 283 1 2111 151 106 22 chr4 41900482 41900679 -160427668 - L1MA9 LINE L1 -444 5868 5689 245 27 54 0 chr4 41900679 41900716 -160427631 + (TTCA)n Simple_repeat Simple_repeat 3 41 0 2111 151 106 22 chr4 41900716 41900922 -160427425 - L1MA9 LINE L1 -623 5689 5431 1408 240 10 30 chr4 41900924 41901359 -160426988 - L1MB2 LINE L1 -259 5912 5511 35 54 0 0 chr4 41955084 41955140 -160373207 + AT_rich Low_complexity Low_complexity 1 56 0 620 261 63 4 chr4 41955196 41955449 -160372898 + Charlie2 DNA MER1_type 2222 2489 -373 1069 131 0 12 chr4 41955450 41955610 -160372737 + AluSx SINE Alu 1 158 -154 498 114 0 0 chr4 41955611 41955690 -160372657 + AluSc SINE Alu 231 309 0 1302 246 16 8 chr4 41955704 41956078 -160372269 + Charlie2 DNA MER1_type 2486 2862 0 211 256 39 39 chr4 41956100 41956178 -160372169 - MER5B DNA MER1_type -96 82 5 2299 131 56 8 chr4 41956391 41956749 -160371598 + THE1C LTR MaLR 1 375 0 2628 186 15 6 chr4 41957004 41957531 -160370816 + L1 LINE L1 4858 5389 -757 476 271 101 29 chr4 41958095 41958302 -160370045 + MIR SINE MIR 31 252 -10 290 257 0 14 chr4 41958505 41958575 -160369772 + Tigger6a DNA MER2_type 5 73 -1010 5056 173 31 40 chr4 41958732 41959091 -160369256 + Tigger6a DNA MER2_type 85 446 -1151 1173 199 82 69 chr4 41959091 41959382 -160368965 - AluJo SINE Alu -6 296 2 5056 173 31 40 chr4 41959382 41959897 -160368450 + Tigger6a DNA MER2_type 446 951 -646 1627 179 42 3 chr4 41959897 41960182 -160368165 - AluJo SINE Alu -16 296 1 5056 173 31 40 chr4 41960182 41960313 -160368034 + Tigger6a DNA MER2_type 951 1082 -1 926 174 64 55 chr4 41960768 41960987 -160367360 - AluSg/x SINE Alu -1 309 89 819 86 0 0 chr4 41961087 41961192 -160367155 - AluSp SINE Alu -208 105 1 1966 136 3 23 chr4 41962438 41962747 -160365600 - AluSq SINE Alu -10 303 1 957 171 34 49 chr4 41963135 41963340 -160365007 + MER20 DNA MER1_type 18 219 0 294 247 69 81 chr4 41963340 41963514 -160364833 + HAL1 LINE L1 22 193 -2314 1984 256 166 50 chr4 41963781 41964928 -160363419 + HAL1 LINE L1 202 1481 -1026 425 321 67 35 chr4 41964945 41965140 -160363207 + L1MCc LINE L1 17 204 -6219 1586 192 97 32 chr4 41965140 41965479 -160362868 - MLT1A1 LTR MaLR 0 365 5 425 321 67 35 chr4 41965479 41965734 -160362613 + L1MCc LINE L1 204 481 -5942 342 0 0 0 chr4 41966217 41966255 -160362092 + (CA)n Simple_repeat Simple_repeat 2 39 0 1432 234 63 52 chr4 41966461 41967013 -160361334 + L1M4 LINE L1 2132 2689 -3457 2122 128 80 80 chr4 41968667 41968955 -160359392 - MLT1B LTR MaLR 0 390 100 2223 122 0 0 chr4 41968955 41969251 -160359096 - AluSc SINE Alu -13 296 1 2122 128 80 80 chr4 41969251 41969352 -160358995 - MLT1B LTR MaLR -289 101 1 2494 87 3 0 chr4 41969855 41970167 -160358180 + AluSp SINE Alu 1 313 0 614 265 148 22 chr4 41970687 41970910 -160357437 - MIR SINE MIR 0 262 12 454 274 95 12 chr4 41970910 41971078 -160357269 + MIR SINE MIR 40 221 -41 279 296 41 20 chr4 41971116 41971214 -160357133 + L2 LINE L2 3181 3280 -33 197 309 181 0 chr4 41971237 41971331 -160357016 + L3b LINE CR1 1436 1546 -37 1809 124 35 0 chr4 41971343 41971600 -160356747 - AluSg1 SINE Alu -9 300 35 500 254 146 18 chr4 41971713 41971993 -160356354 + L1ME4a LINE L1 5767 6082 -39 184 289 168 54 chr4 41972316 41972465 -160355882 - L2 LINE L2 -99 3173 3008 1665 178 43 65 chr4 41972926 41973324 -160355023 + MLT1C LTR MaLR 66 454 -13 26 0 0 0 chr4 41973802 41973828 -160354519 + AT_rich Low_complexity Low_complexity 1 26 0 2233 160 9 98 chr4 41973855 41974306 -160354041 - MLT2D LTR ERVL -1 413 3 3777 138 8 7 chr4 41974332 41974921 -160353426 - L1MB3 LINE L1 -1 6182 5593 544 127 0 0 chr4 41974966 41975278 -160353069 + AluSx SINE Alu 2 313 0 709 281 115 66 chr4 41975400 41975912 -160352435 + MLT1L LTR MaLR 8 544 -71 399 256 41 16 chr4 41976026 41976147 -160352200 - LTR67 LTR ERVL 0 557 434 689 163 22 114 chr4 41976361 41976416 -160351931 - MER96 DNA MER1_type? -8 167 109 2508 81 0 3 chr4 41976416 41976726 -160351621 + AluY SINE Alu 1 309 -2 689 163 22 114 chr4 41976726 41976854 -160351493 - MER96 DNA MER1_type? -66 109 1 563 299 104 43 chr4 41979711 41980056 -160348291 + MLT1L LTR MaLR 246 611 -4 926 215 62 5 chr4 41980066 41980275 -160348072 + MLT1H LTR MaLR 14 234 -315 692 207 0 90 chr4 41980778 41980903 -160347444 - MER5B DNA MER1_type -5 173 69 2034 130 10 3 chr4 41980903 41981195 -160347152 - AluSx SINE Alu -18 294 1 692 207 0 90 chr4 41981195 41981257 -160347090 - MER5B DNA MER1_type -109 69 3 451 294 114 35 chr4 41982197 41982425 -160345922 - MIR SINE MIR 0 262 17 4843 180 24 33 chr4 41983046 41983502 -160344845 + L1MC3 LINE L1 6804 7263 -522 2336 115 72 26 chr4 41983502 41983849 -160344498 + THE1B LTR MaLR 1 363 -1 4843 180 24 33 chr4 41983849 41984383 -160343964 + L1MC3 LINE L1 7263 7785 0 1854 154 76 60 chr4 41984436 41984818 -160343529 + MLT1B LTR MaLR 1 388 -2 2388 77 3 3 chr4 41985175 41985473 -160342874 + AluY SINE Alu 1 298 -13 897 173 0 0 chr4 41985632 41985765 -160342582 - FLAM_C SINE Alu 0 133 1 226 360 0 0 chr4 41986728 41986803 -160341544 + CT-rich Low_complexity Low_complexity 3 77 0 2092 126 10 0 chr4 41987462 41987756 -160340591 + AluSx SINE Alu 1 297 -15 387 261 227 30 chr4 41987841 41988044 -160340303 + MIR SINE MIR 17 259 -3 356 255 74 40 chr4 41988678 41988840 -160339507 + MIR SINE MIR 22 186 -37 336 340 61 14 chr4 41988979 41989126 -160339221 + L2 LINE L2 3117 3270 -2 340 247 75 172 chr4 41989539 41989911 -160338436 - L2 LINE L2 -1 3271 2936 2215 80 0 14 chr4 41989929 41990241 -160338106 + AluY SINE Alu 1 308 0 1921 96 4 15 chr4 41990772 41991068 -160337279 + AluY SINE Alu 16 308 0 2047 166 32 56 chr4 41991540 41991914 -160336433 + MLT1A1 LTR MaLR 1 365 0 713 194 26 99 chr4 41992542 41992627 -160335720 - MER45A DNA AcHobo -1404 177 112 2244 115 0 3 chr4 41992627 41992940 -160335407 + AluSx SINE Alu 1 312 0 713 194 26 99 chr4 41992940 41993045 -160335302 - MER45A DNA AcHobo -1469 112 1 429 350 75 31 chr4 41993065 41993451 -160334896 - L2 LINE L2 -57 3215 2813 1831 142 10 23 chr4 41994583 41994893 -160333454 + AluJo SINE Alu 1 306 -6 856 202 21 21 chr4 41995448 41995636 -160332711 - MSTB LTR MaLR -48 378 191 1801 65 0 0 chr4 41995639 41995856 -160332491 - L1PA8 LINE L1 0 6172 5956 235 234 252 19 chr4 41995893 41996000 -160332347 - MIR3 SINE MIR -28 180 49 687 209 105 0 chr4 41996330 41996483 -160331864 + MER3 DNA MER1_type 1 122 -87 1972 158 54 36 chr4 41997399 41997944 -160330403 + MLT2A2 LTR ERVL 1 554 0 232 296 157 17 chr4 41998589 41998704 -160329643 + MIR3 SINE MIR 30 160 -48 2426 110 27 0 chr4 41998807 41999144 -160329203 - THE1B LTR MaLR 0 364 19 2147 154 26 6 chr4 42000454 42000805 -160327542 + MLT1A1 LTR MaLR 1 358 -7 192 292 135 0 chr4 42001003 42001092 -160327255 + L2 LINE L2 3208 3308 -5 280 264 109 45 chr4 42001733 42001843 -160326504 + MLT1J LTR MaLR 382 498 -13 492 302 80 31 chr4 42001881 42002106 -160326241 + MIR SINE MIR 25 260 -2 2144 121 0 3 chr4 42002826 42003111 -160325236 + AluSx SINE Alu 1 286 -26 243 0 0 0 chr4 42003111 42003138 -160325209 + (TTAA)n Simple_repeat Simple_repeat 3 29 0 2144 121 0 3 chr4 42003138 42003157 -160325190 + AluSx SINE Alu 286 304 -8 881 296 46 72 chr4 42003634 42003824 -160324523 - MLT1K LTR MaLR -23 565 372 2192 115 0 3 chr4 42003824 42004129 -160324218 + AluSx SINE Alu 9 312 0 881 296 46 72 chr4 42004129 42004481 -160323866 - MLT1K LTR MaLR -216 372 37 409 276 20 53 chr4 42004816 42004916 -160323431 + MIR SINE MIR 3 98 -164 16439 119 33 7 chr4 42004916 42006037 -160322310 - Tigger1 DNA MER2_type -1 2417 1327 2092 103 7 7 chr4 42006037 42006329 -160322018 + AluSq SINE Alu 22 313 0 16439 119 33 7 chr4 42006329 42007563 -160320784 - Tigger1 DNA MER2_type -1091 1327 1 409 276 20 53 chr4 42007563 42007614 -160320733 + MIR SINE MIR 98 149 -113 2422 43 0 3 chr4 42007810 42008092 -160320255 - AluY SINE Alu -14 297 17 21 0 0 0 chr4 42008692 42008713 -160319634 + AT_rich Low_complexity Low_complexity 1 21 0 6273 91 9 11 chr4 42008731 42009597 -160318750 - L1MA2 LINE L1 0 6304 5441 430 71 0 0 chr4 42009693 42009749 -160318598 - L1MA2 LINE L1 -871 5431 5376 260 316 205 0 chr4 42009852 42010023 -160318324 - Charlie2 DNA MER1_type -2611 251 46 223 254 30 15 chr4 42010046 42010113 -160318234 - MER5B DNA MER1_type -110 68 1 514 304 46 59 chr4 42010584 42011147 -160317200 + L1MEd LINE L1 564 1119 -5000 222 270 7 124 chr4 42011424 42011525 -160316822 + L2 LINE L2 3152 3235 -78 2359 113 33 33 chr4 42011525 42011888 -160316459 + THE1B LTR MaLR 1 363 -1 222 270 7 124 chr4 42011888 42011923 -160316424 + L2 LINE L2 3235 3272 -41 528 297 67 33 chr4 42012009 42012309 -160316038 + HAL1 LINE L1 1416 1725 -782 228 178 22 0 chr4 42012928 42012973 -160315374 + CT-rich Low_complexity Low_complexity 2 47 0 375 322 70 72 chr4 42013048 42013082 -160315265 + L1ME4a LINE L1 5454 5487 -634 2069 116 19 26 chr4 42013082 42013393 -160314954 + AluSx SINE Alu 1 309 -3 375 322 70 72 chr4 42013393 42013814 -160314533 + L1ME4a LINE L1 5487 5908 -213 2008 129 51 46 chr4 42013942 42014109 -160314238 - THE1C LTR MaLR 0 375 210 210 37 0 0 chr4 42014109 42014136 -160314211 + (GA)n Simple_repeat Simple_repeat 1 27 0 2008 151 0 3 chr4 42014144 42014442 -160313905 + AluSx SINE Alu 3 299 -13 2008 129 51 46 chr4 42014442 42014638 -160313709 - THE1C LTR MaLR -171 204 1 319 228 68 74 chr4 42015172 42015334 -160313013 - L1MC5 LINE L1 -30 7931 7771 8766 151 12 18 chr4 42015367 42017130 -160311217 - L1PB1 LINE L1 -5 6146 4399 234 0 0 0 chr4 42017130 42017156 -160311191 + (TTTTG)n Simple_repeat Simple_repeat 1 26 0 8766 151 12 18 chr4 42017156 42017974 -160310373 - L1PB1 LINE L1 -1752 4399 3577 685 223 89 70 chr4 42018239 42018734 -160309613 + MLT1G1 LTR MaLR 1 571 -19 279 272 43 75 chr4 42018749 42019054 -160309293 - L1MC5 LINE L1 -332 7629 7335 740 190 212 11 chr4 42019054 42019238 -160309109 - MER58A DNA MER1_type 0 224 4 321 265 54 121 chr4 42019261 42019800 -160308547 + HAL1 LINE L1 818 1320 -1187 1634 152 0 73 chr4 42019823 42020125 -160308222 - AluJo SINE Alu -20 292 13 187 301 151 0 chr4 42020780 42020873 -160307474 - L2 LINE L2 -33 3239 3133 292 310 82 29 chr4 42020920 42021091 -160307256 + MER5A DNA MER1_type 7 186 -3 513 217 7 63 chr4 42022300 42022408 -160305939 - MIR SINE MIR -60 202 102 2160 134 67 92 chr4 42022408 42022842 -160305505 + MSTA LTR MaLR 2 424 -4 513 217 7 63 chr4 42022842 42022876 -160305471 - MIR SINE MIR -160 102 68 419 259 110 53 chr4 42022886 42023114 -160305233 - MLT1K LTR MaLR -19 569 329 1576 228 97 14 chr4 42023697 42024168 -160304179 - LTR33A LTR ERVL -7 516 38 258 240 40 0 chr4 42024204 42024279 -160304068 - L1ME4a LINE L1 -11 6110 6033 2556 56 0 0 chr4 42025497 42025801 -160302546 - AluY SINE Alu -7 304 1 240 143 0 0 chr4 42026269 42026311 -160302036 + (TG)n Simple_repeat Simple_repeat 2 43 0 201 39 0 0 chr4 42027064 42027090 -160301257 + (TTTTG)n Simple_repeat Simple_repeat 3 28 0 183 42 0 0 chr4 42027469 42027493 -160300854 + (GA)n Simple_repeat Simple_repeat 1 24 0 259 257 59 40 chr4 42028048 42028149 -160300198 - L2 LINE L2 -1 3312 3210 243 341 16 40 chr4 42028212 42028338 -160300009 + MIR3 SINE MIR 75 197 -11 233 224 0 0 chr4 42029344 42029393 -160298954 - MIR SINE MIR -48 214 166 22 0 0 0 chr4 42029790 42029812 -160298535 + AT_rich Low_complexity Low_complexity 1 22 0 2293 105 0 16 chr4 42030397 42030703 -160297644 + AluSx SINE Alu 1 301 -11 357 305 133 59 chr4 42032335 42032741 -160295606 - L2 LINE L2 -5 3267 2832 26 30 0 0 chr4 42032817 42032850 -160295497 + AT_rich Low_complexity Low_complexity 1 33 0 380 272 129 90 chr4 42033019 42033398 -160294949 - MLT1K LTR MaLR -3 585 192 2341 67 3 3 chr4 42034317 42034616 -160293731 - AluY SINE Alu -12 299 1 189 339 107 33 chr4 42034779 42034900 -160293447 + L2 LINE L2 3139 3268 -4 243 0 0 0 chr4 42034900 42034927 -160293420 + (TATG)n Simple_repeat Simple_repeat 2 28 0 1996 105 84 7 chr4 42034995 42035281 -160293066 - AluSg SINE Alu -2 308 1 326 282 81 32 chr4 42035414 42035538 -160292809 - L2 LINE L2 -2 3270 3141 1813 139 0 8 chr4 42036453 42036719 -160291628 + AluSx SINE Alu 35 298 -14 2260 100 23 0 chr4 42036827 42037127 -160291220 - AluSg SINE Alu -3 307 1 180 27 81 0 chr4 42037254 42037291 -160291056 + A-rich Low_complexity Low_complexity 2 41 0 1063 32 0 8 chr4 42037948 42038073 -160290274 + L1PA5 LINE L1 6028 6151 -3 31 0 0 0 chr4 42038073 42038104 -160290243 + AT_rich Low_complexity Low_complexity 1 31 0 2140 117 3 0 chr4 42038302 42038602 -160289745 - AluY SINE Alu -10 301 1 1736 103 9 0 chr4 42039612 42039845 -160288502 - AluSg SINE Alu -75 235 1 2174 130 0 3 chr4 42039910 42040218 -160288129 - AluSx SINE Alu -5 307 1 216 324 171 41 chr4 42041345 42041515 -160286832 - MIR SINE MIR -6 256 65 834 182 8 0 chr4 42041620 42041752 -160286595 - FLAM_A SINE Alu 0 133 1 1257 271 67 23 chr4 42041890 42042325 -160286022 - MER69 DNA AcHobo -1933 593 140 2509 183 21 30 chr4 42042328 42042698 -160285649 + MER6A DNA MER2_type 1 366 -499 2372 66 7 3 chr4 42042698 42043001 -160285346 - AluY SINE Alu -7 304 1 2509 183 21 30 chr4 42043001 42043156 -160285191 + MER6A DNA MER2_type 366 521 -84 1845 147 25 0 chr4 42043256 42043541 -160284806 - AluSx SINE Alu -20 292 1 186 313 127 81 chr4 42043823 42043924 -160284423 + L3 LINE CR1 919 1014 -563 2174 132 0 0 chr4 42043924 42044234 -160284113 - AluSx SINE Alu -2 310 1 186 313 127 81 chr4 42044234 42044448 -160283899 + L3 LINE CR1 1014 1256 -321 1015 180 193 30 chr4 42044448 42044743 -160283604 - MER2 DNA MER2_type 0 344 2 186 313 127 81 chr4 42044743 42044797 -160283550 + L3 LINE CR1 1256 1306 -271 661 189 84 29 chr4 42044858 42045174 -160283173 - MER93b LTR ERV1 0 402 8 4985 142 10 16 chr4 42045931 42046701 -160281646 - LTR39 LTR ERV1 0 783 18 1123 114 0 0 chr4 42046810 42046959 -160281388 - AluSg SINE Alu -161 149 1 357 221 103 81 chr4 42047586 42047722 -160280625 - L2 LINE L2 0 3313 3175 23 33 0 0 chr4 42047973 42048003 -160280344 + AT_rich Low_complexity Low_complexity 1 30 0 1481 214 169 38 chr4 42048765 42049261 -160279086 + MER34B LTR ERV1 5 565 0 2239 129 3 0 chr4 42049286 42049597 -160278750 + AluSx SINE Alu 1 312 0 543 345 73 0 chr4 42050219 42050451 -160277896 - MIR SINE MIR 0 262 14 1709 112 50 8 chr4 42050495 42050755 -160277592 + AluSx SINE Alu 23 293 -19 258 32 0 0 chr4 42051128 42051159 -160277188 + (TG)n Simple_repeat Simple_repeat 1 31 0 2188 91 0 21 chr4 42051200 42051485 -160276862 + AluSg SINE Alu 1 279 -31 2342 101 0 0 chr4 42051511 42051817 -160276530 + AluSg1 SINE Alu 1 306 -3 1563 101 55 0 chr4 42051940 42052158 -160276189 + MER30 DNA MER1_type 1 230 0 2275 97 7 10 chr4 42052177 42052485 -160275862 + AluSx SINE Alu 1 307 -5 236 296 0 39 chr4 42052636 42052726 -160275621 + MER5A DNA MER1_type 84 168 -10 251 229 0 57 chr4 42052740 42052810 -160275537 + MER69 DNA AcHobo 1 66 -1160 254 94 0 0 chr4 42052857 42052889 -160275458 - MER6 DNA MER2_type 0 865 834 1022 159 0 6 chr4 42052991 42053520 -160274827 + (TGG)n Simple_repeat Simple_repeat 1 526 0 451 327 32 36 chr4 42053659 42053879 -160274468 + L2 LINE L2 3054 3272 0 192 200 0 0 chr4 42053901 42053946 -160274401 + (TGAA)n Simple_repeat Simple_repeat 4 48 0 241 299 231 0 chr4 42054304 42054421 -160273926 - MIR SINE MIR -91 171 28 829 264 98 65 chr4 42054471 42054899 -160273448 - MLT1J1 LTR MaLR -4 442 1 421 285 143 72 chr4 42055123 42055443 -160272904 + MLT1K LTR MaLR 131 490 -98 2154 120 10 0 chr4 42055443 42055742 -160272605 - AluSx SINE Alu -10 302 1 421 285 143 72 chr4 42055742 42055849 -160272498 + MLT1K LTR MaLR 490 588 0 234 62 0 0 chr4 42055958 42055990 -160272357 + (TC)n Simple_repeat Simple_repeat 1 32 0 785 183 58 62 chr4 42056019 42056227 -160272120 + MLT1B LTR MaLR 19 225 -165 198 191 0 0 chr4 42056338 42056380 -160271967 + (TATATG)n Simple_repeat Simple_repeat 3 44 0 195 42 0 0 chr4 42056437 42056461 -160271886 + (TG)n Simple_repeat Simple_repeat 2 25 0 2222 60 13 57 chr4 42056680 42056995 -160271352 + AluSc SINE Alu 1 301 -8 341 277 125 9 chr4 42057004 42057116 -160271231 + MIR SINE MIR 45 169 -93 1507 55 0 4 chr4 42057117 42057328 -160271019 + L1PA5 LINE L1 5701 5906 -225 2182 91 19 60 chr4 42063093 42063411 -160264936 - AluSg SINE Alu -5 305 1 581 248 52 7 chr4 42063651 42063804 -160264543 - MIR SINE MIR -2 260 101 226 138 52 52 chr4 42063804 42063862 -160264485 - LTR31 LTR ERV1 -82 537 480 242 311 0 19 chr4 42064145 42064248 -160264099 - L1MC4 LINE L1 -1328 6714 6614 308 275 0 22 chr4 42064326 42064417 -160263930 + L1MC4 LINE L1 6614 6702 -1340 1859 166 0 0 chr4 42064425 42064715 -160263632 - AluJb SINE Alu -22 290 1 3811 221 75 20 chr4 42064775 42066371 -160261976 - L1ME1 LINE L1 -78 6088 4398 249 315 33 11 chr4 42066376 42066468 -160261879 + L1MDb LINE L1 240 333 -5786 398 289 147 0 chr4 42066476 42066701 -160261646 + L1MEd LINE L1 601 858 -5261 291 156 0 0 chr4 42066793 42066838 -160261509 - Alu SINE Alu -257 46 2 2278 105 0 0 chr4 42066959 42067263 -160261084 - AluSg SINE Alu -6 304 1 774 121 0 48 chr4 42067280 42067404 -160260943 - FLAM_C SINE Alu -17 126 9 2338 236 49 9 chr4 42067613 42068304 -160260043 + L1MDb LINE L1 497 1226 -4893 418 223 22 58 chr4 42068445 42068584 -160259763 + LTR16A1 LTR ERVL 324 457 0 27 0 0 0 chr4 42068708 42068735 -160259612 + AT_rich Low_complexity Low_complexity 1 27 0 312 225 79 34 chr4 42068737 42068826 -160259521 + Zaphod DNA AcHobo 3939 4031 0 946 285 51 60 chr4 42068833 42069503 -160258844 - L1ME1 LINE L1 -1773 4373 3710 2792 173 29 35 chr4 42069558 42069857 -160258490 - MER89 LTR ERV1 0 559 263 2281 101 3 0 chr4 42069857 42070153 -160258194 + AluSx SINE Alu 1 297 -15 2792 173 29 35 chr4 42070153 42070403 -160257944 - MER89 LTR ERV1 -296 263 13 501 330 62 12 chr4 42070412 42070909 -160257438 - L1ME1 LINE L1 -2510 3636 3115 21 0 0 0 chr4 42070987 42071008 -160257339 + AT_rich Low_complexity Low_complexity 1 21 0 739 40 10 30 chr4 42071055 42071155 -160257192 - L1PA5 LINE L1 0 6154 6057 2480 123 22 8 chr4 42071173 42071532 -160256815 - THE1B LTR MaLR 0 364 1 276 321 86 0 chr4 42071728 42071809 -160256538 + MER91A DNA MER1_type 109 196 0 239 328 112 34 chr4 42071932 42072368 -160255979 + L1M4 LINE L1 4786 5255 -891 1451 188 43 8 chr4 42072440 42072695 -160255652 + Tigger7 DNA MER2_type 1 264 -2223 186 118 0 0 chr4 42072695 42072729 -160255618 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 571 185 0 0 chr4 42072730 42072822 -160255525 + Tigger7 DNA MER2_type 2400 2491 0 209 226 0 19 chr4 42072951 42073004 -160255343 + GA-rich Low_complexity Low_complexity 3 54 0 2524 25 0 3 chr4 42073218 42073526 -160254821 - AluYa5 SINE Alu 0 307 1 1129 218 54 51 chr4 42073976 42074348 -160253999 - MER69B DNA AcHobo -1 1225 853 2137 123 7 0 chr4 42074348 42074650 -160253697 - AluSx SINE Alu -4 308 5 684 141 0 0 chr4 42074685 42074777 -160253570 - FLAM SINE Alu -14 129 38 229 266 16 0 chr4 42074841 42074905 -160253442 - MER69B DNA AcHobo -378 848 784 965 140 6 0 chr4 42075036 42075214 -160253133 + (CCA)n Simple_repeat Simple_repeat 2 180 0 1920 144 7 7 chr4 42075393 42075678 -160252669 - AluSx SINE Alu -17 295 11 208 296 26 26 chr4 42075711 42075826 -160252521 + (TATATG)n Simple_repeat Simple_repeat 3 117 0 * 215 337 0 12 chr4 42075762 42075848 -160252499 + (CATATA)n Simple_repeat Simple_repeat 2 86 0 1511 194 52 3 chr4 42076021 42076040 -160252307 - AluJo SINE Alu -10 302 285 305 24 24 0 chr4 42076040 42076082 -160252265 + (TTAA)n Simple_repeat Simple_repeat 2 44 0 1511 194 52 3 chr4 42076082 42076350 -160251997 - AluJo SINE Alu -27 285 1 234 217 0 0 chr4 42076420 42076466 -160251881 + Alu SINE Alu 126 171 -132 872 176 35 129 chr4 42076596 42076851 -160251496 - MIR SINE MIR 0 262 32 1739 144 28 11 chr4 42077676 42077961 -160250386 + AluJb SINE Alu 14 303 -9 1945 170 11 40 chr4 42078118 42078443 -160249904 + MLT1A1 LTR MaLR 1 315 -50 2420 45 6 22 chr4 42078443 42078757 -160249590 + AluY SINE Alu 1 309 -2 1945 170 11 40 chr4 42078757 42078807 -160249540 + MLT1A1 LTR MaLR 315 365 0 601 323 23 18 chr4 42078926 42079146 -160249201 + MIR SINE MIR 41 261 -1 379 291 93 13 chr4 42079923 42080074 -160248273 + MIR SINE MIR 73 235 -27 188 317 117 78 chr4 42080075 42080255 -160248092 - MIR SINE MIR -27 235 49 2481 59 0 0 chr4 42080669 42080973 -160247374 + AluY SINE Alu 1 304 -7 1674 180 0 0 chr4 42080980 42081287 -160247060 + AluJb SINE Alu 1 307 0 2209 84 37 0 chr4 42081363 42081660 -160246687 + AluSp SINE Alu 1 308 -5 233 160 0 100 chr4 42081969 42082019 -160246328 - MLT2D LTR ERVL 0 414 370 570 256 117 36 chr4 42082133 42082356 -160245991 + MIR SINE MIR 7 247 -15 2111 135 25 25 chr4 42082411 42082766 -160245581 + THE1A LTR MaLR 1 355 0 198 0 0 0 chr4 42083505 42083527 -160244820 + (T)n Simple_repeat Simple_repeat 1 22 0 770 172 0 0 chr4 42084001 42084123 -160244224 - FLAM_A SINE Alu -11 122 1 711 212 41 0 chr4 42085129 42085275 -160243072 - L2 LINE L2 -4 3268 3117 25 31 0 0 chr4 42086352 42086384 -160241963 + AT_rich Low_complexity Low_complexity 1 32 0 304 243 54 14 chr4 42086534 42086608 -160241739 + L1MCa LINE L1 1991 2067 -4359 * 417 211 0 42 chr4 42086546 42086641 -160241706 - L1MC4 LINE L1 -1337 6705 6615 519 192 30 63 chr4 42087041 42087172 -160241175 + MIR SINE MIR 50 175 -62 239 320 126 0 chr4 42089125 42089228 -160239119 - MIR SINE MIR -135 127 12 264 305 176 21 chr4 42091415 42091602 -160236745 + L3 LINE CR1 234 449 -1128 431 250 9 26 chr4 42091745 42091861 -160236486 - MER81 DNA DNA 0 114 1 358 353 43 0 chr4 42091901 42092017 -160236330 + L3 LINE CR1 620 740 -837 2121 101 0 0 chr4 42092421 42092708 -160235639 + AluSx SINE Alu 1 287 -25 2321 55 3 29 chr4 42093704 42094011 -160234336 - AluSp SINE Alu -14 299 1 2113 118 0 0 chr4 42094268 42094572 -160233775 + AluSx SINE Alu 3 306 -6 344 299 91 49 chr4 42095103 42095540 -160232807 - L1ME LINE L1 -324 5797 5330 396 0 0 0 chr4 42096863 42096907 -160231440 + (CA)n Simple_repeat Simple_repeat 2 45 0 191 333 56 14 chr4 42097238 42097310 -160231037 + MIR SINE MIR 2 76 -186 2007 109 7 7 chr4 42097525 42097827 -160230520 + AluSq SINE Alu 1 302 -11 443 212 23 30 chr4 42097898 42098030 -160230317 + L1MC5 LINE L1 7071 7201 -760 2135 110 0 0 chr4 42098333 42098625 -160229722 - AluSx SINE Alu -20 292 1 606 233 44 7 chr4 42103032 42103191 -160225156 - MIR SINE MIR -58 150 2 406 274 49 37 chr4 42103493 42103657 -160224690 - MIR SINE MIR -77 185 20 205 98 0 98 chr4 42103909 42103950 -160224397 + L2 LINE L2 3277 3313 0 2417 81 0 0 chr4 42104863 42105170 -160223177 - AluSq SINE Alu -6 307 1 22 35 0 0 chr4 42106603 42106632 -160221715 + AT_rich Low_complexity Low_complexity 1 29 0 207 100 0 0 chr4 42108381 42108411 -160219936 + (A)n Simple_repeat Simple_repeat 1 30 0 258 321 0 0 chr4 42109764 42109870 -160218477 + G-rich Low_complexity Low_complexity 1 106 0 21 36 0 0 chr4 42110658 42110686 -160217661 + GC_rich Low_complexity Low_complexity 1 28 0 242 123 46 46 chr4 42110749 42110814 -160217533 + (CCCCG)n Simple_repeat Simple_repeat 4 68 0 23 0 0 0 chr4 42110857 42110880 -160217467 + GC_rich Low_complexity Low_complexity 1 23 0 294 198 9 43 chr4 42110932 42111048 -160217299 + C-rich Low_complexity Low_complexity 4 115 0 22 0 0 0 chr4 42111198 42111220 -160217127 + GC_rich Low_complexity Low_complexity 1 22 0 185 0 40 0 chr4 42111233 42111258 -160217089 + (CGCGG)n Simple_repeat Simple_repeat 5 30 0 1162 160 0 62 chr4 42111974 42112199 -160216148 - AluJo SINE Alu -17 295 85 481 309 72 7 chr4 42113103 42113255 -160215092 - MIR SINE MIR -4 258 97 223 307 9 97 chr4 42113641 42113755 -160214592 - L2 LINE L2 0 3272 3169 227 303 40 0 chr4 42113766 42113842 -160214505 + LTR33 LTR ERVL 273 351 -170 209 298 191 36 chr4 42114042 42114210 -160214137 - MIR SINE MIR -12 250 57 732 219 7 7 chr4 42114516 42114653 -160213694 - MLT1J LTR MaLR -328 183 47 1095 271 64 34 chr4 42115078 42115517 -160212830 - MLT1J LTR MaLR -7 504 53 540 189 53 15 chr4 42115528 42115660 -160212687 + MIR SINE MIR 82 218 -44 1552 96 55 0 chr4 42115793 42116011 -160212336 + MER30 DNA MER1_type 1 230 0 188 194 0 28 chr4 42116714 42116750 -160211597 - L2 LINE L2 -15 3298 3264 435 119 0 0 chr4 42117104 42117171 -160211176 + (TCCC)n Simple_repeat Simple_repeat 4 70 0 4290 126 20 88 chr4 42117540 42117640 -160210707 - LTR1 LTR ERV1 0 785 680 1970 131 10 3 chr4 42117640 42117945 -160210402 + AluSx SINE Alu 1 307 -5 4290 126 20 88 chr4 42117945 42118222 -160210125 - LTR1 LTR ERV1 -105 680 386 2060 130 3 0 chr4 42118222 42118521 -160209826 - AluSx SINE Alu -12 300 1 4290 126 20 88 chr4 42118521 42118984 -160209363 - LTR1 LTR ERV1 -399 386 1 1509 124 120 8 chr4 42119257 42119524 -160208823 - AluJb SINE Alu -15 297 1 1892 148 0 3 chr4 42119762 42120065 -160208282 + AluJb SINE Alu 1 302 -10 223 322 109 25 chr4 42120438 42120640 -160207707 - L2 LINE L2 -90 3223 3005 24 0 0 0 chr4 42120898 42120922 -160207425 + AT_rich Low_complexity Low_complexity 1 24 0 584 202 18 0 chr4 42121047 42121161 -160207186 - L2 LINE L2 -10 3303 3188 1564 123 72 93 chr4 42121161 42121493 -160206854 - MLT1B LTR MaLR 0 390 66 945 133 0 0 chr4 42121494 42121629 -160206718 + AluJo SINE Alu 1 135 -177 1532 206 27 0 chr4 42121629 42121921 -160206426 + AluJb SINE Alu 1 300 -12 417 183 24 24 chr4 42121927 42122009 -160206338 - MLT1B LTR MaLR -308 82 1 493 250 40 8 chr4 42122058 42122182 -160206165 - MIR SINE MIR -23 239 112 2074 118 0 13 chr4 42122412 42122717 -160205630 - AluSx SINE Alu 0 312 12 41 66 0 0 chr4 42122778 42122854 -160205493 + AT_rich Low_complexity Low_complexity 1 76 0 1060 158 0 0 chr4 42123459 42123636 -160204711 - FRAM SINE Alu 0 176 1 355 295 95 24 chr4 42123644 42123821 -160204526 - MIR SINE MIR -62 146 7 426 330 84 28 chr4 42123928 42124213 -160204134 - L2 LINE L2 -5 3308 3008 441 0 0 0 chr4 42124393 42124442 -160203905 + (TCCA)n Simple_repeat Simple_repeat 4 52 0 191 267 0 0 chr4 42124447 42124492 -160203855 - L2 LINE L2 -8 3305 3261 212 208 0 38 chr4 42124503 42124556 -160203791 + T-rich Low_complexity Low_complexity 3 53 0 1914 88 4 0 chr4 42125020 42125269 -160203078 + AluSp SINE Alu 1 250 -63 2253 269 82 48 chr4 42125663 42126193 -160202154 + L1MEc LINE L1 122 632 -5764 823 215 115 5 chr4 42126193 42126395 -160201952 - MER58A DNA MER1_type 0 224 1 1447 148 170 0 chr4 42126403 42126680 -160201667 - MER33 DNA MER1_type 0 324 1 2253 269 82 48 chr4 42126680 42127000 -160201347 + L1MEc LINE L1 638 945 -5451 1458 203 37 11 chr4 42127000 42127271 -160201076 + AluJb SINE Alu 5 282 -30 958 211 0 16 chr4 42127271 42127305 -160201042 + AluJo SINE Alu 5 306 0 2253 269 82 48 chr4 42127305 42127691 -160200656 + L1MEc LINE L1 945 1316 -5080 635 211 8 16 chr4 42127691 42127819 -160200528 + FLAM_A SINE Alu 5 131 -2 2253 269 82 48 chr4 42127819 42128376 -160199971 + L1MEc LINE L1 1316 1971 -4425 1669 182 133 6 chr4 42128378 42128724 -160199623 - MER47B DNA MER2_type -1 417 28 5563 236 72 15 chr4 42128728 42130602 -160197745 + L1MEc LINE L1 1973 3890 -2325 577 333 61 4 chr4 42130720 42130951 -160197396 - MIR SINE MIR -9 253 10 238 259 122 38 chr4 42131279 42131410 -160196937 + MIR SINE MIR 47 188 -74 261 244 0 49 chr4 42131581 42131663 -160196684 + MER112 DNA MER1_type 8 85 -175 253 250 107 9 chr4 42131795 42131907 -160196440 + MER112 DNA MER1_type 113 235 -25 207 288 136 64 chr4 42132098 42132223 -160196124 - L2 LINE L2 0 3272 3139 2377 74 24 0 chr4 42132587 42132884 -160195463 - AluSq SINE Alu -9 304 1 388 284 30 56 chr4 42132952 42133149 -160195198 + L2 LINE L2 3103 3294 -19 318 80 0 0 chr4 42134374 42134424 -160193923 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 1000 303 98 34 chr4 42134578 42135140 -160193207 + L1MC4a LINE L1 5333 5930 -1878 2389 79 3 0 chr4 42135175 42135478 -160192869 - AluY SINE Alu -7 304 1 1915 103 31 0 chr4 42135969 42136230 -160192117 - AluSx SINE Alu -43 269 1 2483 73 0 0 chr4 42136657 42136957 -160191390 + AluY SINE Alu 1 300 -11 503 266 70 25 chr4 42137872 42138071 -160190276 + L1ME LINE L1 5611 5818 -303 737 193 0 47 chr4 42138079 42138229 -160190118 + Tigger2a DNA MER2_type 1 143 -291 461 134 12 24 chr4 42138230 42138312 -160190035 - AluSg SINE Alu -12 297 217 1477 103 0 0 chr4 42138312 42138497 -160189850 - AluSg SINE Alu -125 185 1 1819 159 0 23 chr4 42138498 42138806 -160189541 + Tigger2a DNA MER2_type 144 444 0 2367 112 0 0 chr4 42139250 42139554 -160188793 - AluSx SINE Alu -8 304 1 4303 126 104 99 chr4 42139886 42141259 -160187088 - pTR5 LTR ERV1 0 2438 743 2199 130 0 0 chr4 42141292 42141593 -160186754 + AluSx SINE Alu 1 301 -11 232 353 110 15 chr4 42141596 42141732 -160186615 + L2 LINE L2 3121 3269 -3 216 0 0 0 chr4 42142599 42142623 -160185724 + (TC)n Simple_repeat Simple_repeat 2 25 0 * 240 35 0 0 chr4 42142622 42142651 -160185696 + (TA)n Simple_repeat Simple_repeat 1 29 0 2216 107 7 3 chr4 42142655 42142954 -160185393 - AluSx SINE Alu -12 300 1 378 192 46 83 chr4 42143469 42143689 -160184658 + MIR SINE MIR 16 222 -40 820 61 0 0 chr4 42143701 42143799 -160184548 - AluSg/x SINE Alu -11 298 201 21 36 0 0 chr4 42143979 42144007 -160184340 + GC_rich Low_complexity Low_complexity 1 28 0 21 100 0 0 chr4 42144069 42144139 -160184208 + GC_rich Low_complexity Low_complexity 1 70 0 23 0 0 0 chr4 42144153 42144176 -160184171 + GC_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr4 42144347 42144375 -160183972 + GC_rich Low_complexity Low_complexity 1 28 0 24 53 0 0 chr4 42145002 42145040 -160183307 + GC_rich Low_complexity Low_complexity 1 38 0 1801 125 4 0 chr4 42145313 42145569 -160182778 + AluSx SINE Alu 54 310 -2 2306 103 7 0 chr4 42145701 42146002 -160182345 - AluSp SINE Alu -10 303 1 337 290 39 7 chr4 42146268 42146425 -160181922 + L1ME2 LINE L1 5721 5886 -278 559 202 53 0 chr4 42148792 42148906 -160179441 + MIR SINE MIR 51 170 -92 2125 97 0 7 chr4 42148906 42149245 -160179102 + AluSg SINE Alu 4 340 0 1558 168 7 50 chr4 42150663 42150960 -160177387 - AluJb SINE Alu -28 284 1 590 244 118 39 chr4 42151510 42151739 -160176608 - MIR SINE MIR 0 262 16 1841 5 5 0 chr4 42152211 42152409 -160175938 - AluYa5 SINE Alu -2 309 111 539 282 51 0 chr4 42152418 42152574 -160175773 - MIR SINE MIR -70 192 29 2205 123 0 3 chr4 42152574 42152875 -160175472 - AluSx SINE Alu -12 300 1 385 294 14 14 chr4 42153581 42153727 -160174620 + MIR3 SINE MIR 17 162 -46 4005 168 16 48 chr4 42153796 42154607 -160173740 + LTR1 LTR ERV1 1 785 0 2746 265 127 25 chr4 42155778 42157149 -160171198 - L2 LINE L2 0 3313 1724 1330 266 53 36 chr4 42157151 42157552 -160170795 - HERV16 LTR ERVL -2318 3336 2924 2085 103 0 43 chr4 42157552 42157876 -160170471 - AluSg SINE Alu 0 310 1 1330 266 53 36 chr4 42157876 42157948 -160170399 - HERV16 LTR ERVL -2730 2924 2855 330 306 46 56 chr4 42158294 42158560 -160169787 - HERV16 LTR ERVL -3798 1198 1056 1924 146 3 3 chr4 42158863 42159157 -160169190 + AluJb SINE Alu 1 294 -18 261 323 57 16 chr4 42159476 42159600 -160168747 - L2 LINE L2 0 3272 3144 271 305 29 9 chr4 42160132 42160237 -160168110 - MIR SINE MIR -137 125 19 1795 155 41 33 chr4 42160260 42160622 -160167725 + MLT1A1 LTR MaLR 1 365 0 930 204 70 12 chr4 42160911 42161167 -160167180 - L1ME LINE L1 -553 5678 5410 1245 213 72 35 chr4 42161183 42161616 -160166731 - L1ME LINE L1 -3130 3085 2637 289 306 45 8 chr4 42161638 42161772 -160166575 - L1ME LINE L1 -3669 2546 2408 481 243 57 29 chr4 42161808 42162018 -160166329 - L1ME LINE L1 -4047 2349 2134 563 281 29 25 chr4 42162347 42162628 -160165719 - L1ME LINE L1 -4700 1696 1415 559 163 143 41 chr4 42162779 42162975 -160165372 + MER5C DNA MER1_type 55 270 -54 239 275 101 0 chr4 42163449 42163518 -160164829 - L1ME LINE L1 -5491 714 639 2204 122 13 3 chr4 42163753 42164057 -160164290 + AluSx SINE Alu 6 312 0 438 275 99 30 chr4 42164293 42164526 -160163821 + Charlie7 DNA MER1_type 346 594 -2018 * 1642 227 130 53 chr4 42164523 42164961 -160163386 + Charlie7 DNA MER1_type 1744 2147 -465 2291 96 13 0 chr4 42164961 42165263 -160163084 + AluSc SINE Alu 1 306 -3 1642 227 130 53 chr4 42165263 42165630 -160162717 + Charlie7 DNA MER1_type 2147 2611 -1 382 225 84 58 chr4 42165691 42165831 -160162516 + L2 LINE L2 3076 3224 -89 2429 72 0 10 chr4 42165831 42166137 -160162210 - AluY SINE Alu -8 303 1 382 225 84 58 chr4 42166137 42166187 -160162160 + L2 LINE L2 3224 3271 -42 1565 229 131 25 chr4 42166261 42166751 -160161596 + MLT1F LTR MaLR 1 542 0 970 206 16 16 chr4 42167257 42167446 -160160901 - MER5A DNA MER1_type 0 189 1 2361 96 3 6 chr4 42167508 42167821 -160160526 + AluSx SINE Alu 1 312 0 267 315 219 14 chr4 42167857 42168290 -160160057 + L2 LINE L2 2767 3302 -11 327 175 105 88 chr4 42169539 42169653 -160158694 - L2 LINE L2 -5 3308 3193 1190 247 97 43 chr4 42169707 42170172 -160158175 + MLT1H1 LTR MaLR 66 555 0 696 235 71 20 chr4 42170502 42170698 -160157649 - MIR SINE MIR -12 250 45 188 410 10 0 chr4 42170698 42170798 -160157549 - L2 LINE L2 -499 2815 2715 291 286 24 32 chr4 42171529 42171655 -160156692 + MIR3 SINE MIR 30 154 -54 1531 208 77 51 chr4 42171829 42172257 -160156090 - MLT1F LTR MaLR 0 542 104 582 226 17 0 chr4 42172422 42172537 -160155810 - MLT1F LTR MaLR -425 117 1 392 269 56 0 chr4 42172620 42172728 -160155619 + L2 LINE L2 3178 3291 -22 375 263 79 0 chr4 42172734 42172848 -160155499 - MIR SINE MIR -95 167 45 314 107 18 0 chr4 42173067 42173123 -160155224 + (GA)n Simple_repeat Simple_repeat 2 58 0 904 241 5 5 chr4 42174144 42174360 -160153987 + MIR SINE MIR 5 220 -42 873 296 84 74 chr4 42174415 42174490 -160153857 - L2 LINE L2 -50 3263 3190 1878 169 42 89 chr4 42174490 42174821 -160153526 + MLT1D LTR MaLR 2 300 -205 2060 154 0 7 chr4 42174821 42175127 -160153220 + AluSx SINE Alu 1 304 -8 1878 169 42 89 chr4 42175127 42175323 -160153024 + MLT1D LTR MaLR 300 504 -1 873 296 84 74 chr4 42175323 42176072 -160152275 - L2 LINE L2 -123 3190 2422 2163 129 0 0 chr4 42176072 42176367 -160151980 - AluSc SINE Alu -14 295 1 873 296 84 74 chr4 42176367 42176434 -160151913 - L2 LINE L2 -891 2422 2357 1474 174 4 0 chr4 42176587 42176822 -160151525 - AluSx SINE Alu -76 236 1 1640 156 54 10 chr4 42178807 42179102 -160149245 + AluSx SINE Alu 5 312 0 266 303 77 64 chr4 42179300 42179683 -160148664 + L2 LINE L2 2676 3078 -194 245 119 0 0 chr4 42179694 42179736 -160148611 + MSTB1 LTR MaLR 65 106 -326 319 228 238 0 chr4 42179800 42179901 -160148446 + L2 LINE L2 3189 3313 0 263 160 20 20 chr4 42180106 42180156 -160148191 + L2 LINE L2 3204 3253 -19 754 266 178 0 chr4 42180202 42180506 -160147841 + MLT1L LTR MaLR 43 400 -215 630 279 40 53 chr4 42180539 42180631 -160147716 + L2 LINE L2 2996 3088 -225 2017 162 105 37 chr4 42180631 42180831 -160147516 + MSTB1 LTR MaLR 1 186 -246 2140 117 0 20 chr4 42180831 42181130 -160147217 + AluSq SINE Alu 1 293 -20 2017 162 105 37 chr4 42181130 42181330 -160147017 + MSTB1 LTR MaLR 186 428 -4 630 279 40 53 chr4 42181330 42181559 -160146788 + L2 LINE L2 3088 3313 0 397 338 20 26 chr4 42182259 42182561 -160145786 - L2 LINE L2 -2353 961 662 2349 106 0 0 chr4 42182727 42183028 -160145319 + AluSx SINE Alu 1 301 -11 2056 120 11 11 chr4 42183629 42183960 -160144387 - AluSx SINE Alu 0 331 1 206 188 0 21 chr4 42184315 42184363 -160143984 - L2 LINE L2 -552 2762 2716 359 248 70 0 chr4 42184901 42185030 -160143317 + L1ME4a LINE L1 5982 6119 -2 2265 95 20 0 chr4 42185055 42185350 -160142997 + AluSx SINE Alu 2 302 -10 1026 104 8 0 chr4 42185731 42185865 -160142482 + AluSq/x SINE Alu 1 135 -178 1788 114 89 11 chr4 42185865 42186146 -160142201 + AluSx SINE Alu 1 303 -9 2149 123 13 0 chr4 42186320 42186622 -160141725 - AluSg SINE Alu -2 308 3 59 27 0 0 chr4 42186814 42186887 -160141460 + AT_rich Low_complexity Low_complexity 1 73 0 518 131 10 71 chr4 42186937 42187036 -160141311 - LTR1 LTR ERV1 0 785 693 2122 125 10 0 chr4 42187037 42187342 -160141005 + AluSx SINE Alu 1 308 -4 312 260 153 68 chr4 42187556 42187791 -160140556 + Charlie8 DNA MER1_type 3 257 -2160 182 289 0 0 chr4 42187881 42187919 -160140428 - MIR SINE MIR -21 241 204 638 168 7 0 chr4 42187925 42188062 -160140285 + (TCTA)n Simple_repeat Simple_repeat 2 139 0 1641 184 14 3 chr4 42188075 42188368 -160139979 + AluJo SINE Alu 1 296 -16 2018 141 0 7 chr4 42188370 42188676 -160139671 + AluSx SINE Alu 1 304 0 298 210 25 25 chr4 42188698 42188779 -160139568 - MIR SINE MIR -177 85 5 2175 113 0 10 chr4 42188921 42189222 -160139125 - AluSx SINE Alu -14 298 1 350 260 8 0 chr4 42189879 42190006 -160138341 + (TA)n Simple_repeat Simple_repeat 2 129 0 1507 116 27 4 chr4 42190929 42191154 -160137193 + MER30 DNA MER1_type 1 230 0 313 293 0 0 chr4 42191394 42191469 -160136878 + MIR3 SINE MIR 118 192 -16 258 285 33 98 chr4 42191599 42191683 -160136664 + MIR SINE MIR 51 139 -123 2054 130 0 3 chr4 42191683 42191983 -160136364 - AluSx SINE Alu -13 299 1 258 285 33 98 chr4 42191983 42192112 -160136235 + MIR SINE MIR 139 250 -12 2360 98 3 0 chr4 42192323 42192620 -160135727 + AluSx SINE Alu 3 300 -12 1586 142 37 15 chr4 42192787 42193055 -160135292 + AluJo SINE Alu 1 274 -38 237 173 77 0 chr4 42193108 42193160 -160135187 - MSTB1 LTR MaLR 0 457 402 315 65 0 0 chr4 42193171 42193217 -160135130 + (GA)n Simple_repeat Simple_repeat 2 47 0 2010 159 35 16 chr4 42193217 42193587 -160134760 - MSTB1 LTR MaLR -55 377 1 2351 94 3 10 chr4 42194307 42194614 -160133733 + AluSc SINE Alu 1 305 -4 25 0 0 0 chr4 42195113 42195138 -160133209 + AT_rich Low_complexity Low_complexity 1 25 0 277 273 0 0 chr4 42195517 42195583 -160132764 + MER5B DNA MER1_type 17 82 -96 201 238 16 32 chr4 42195797 42195860 -160132487 - MER5A DNA MER1_type 0 189 128 1981 161 6 3 chr4 42195977 42196288 -160132059 - AluJb SINE Alu 0 312 1 22 35 0 0 chr4 42196474 42196503 -160131844 + AT_rich Low_complexity Low_complexity 1 29 0 1809 147 22 26 chr4 42197595 42197908 -160130439 + AluJo SINE Alu 1 312 0 23 33 0 0 chr4 42198854 42198884 -160129463 + AT_rich Low_complexity Low_complexity 1 30 0 4993 119 39 11 chr4 42299886 42300651 -160027696 + MER11C LTR ERVK 271 1057 -14 192 77 0 0 chr4 42300823 42300849 -160027498 + (TCCC)n Simple_repeat Simple_repeat 3 28 0 691 133 0 0 chr4 42300863 42300968 -160027379 - L1 LINE L1 -1314 4832 4728 2719 183 118 15 chr4 42301068 42301669 -160026678 + MER63C DNA MER1_type 268 930 0 294 304 80 0 chr4 42302688 42302826 -160025521 + MIR3 SINE MIR 47 195 -13 455 332 70 29 chr4 42303191 42303435 -160024912 + MIR SINE MIR 8 261 -1 323 303 90 0 chr4 42303870 42303992 -160024355 + L2 LINE L2 3180 3312 -1 402 176 0 0 chr4 42303995 42304063 -160024284 + AluS SINE Alu 2 69 -244 468 135 156 31 chr4 42304702 42304798 -160023549 + Ricksha DNA DNA 8 115 -1066 * 5874 131 20 44 chr4 42304781 42305128 -160023219 + Ricksha DNA DNA 1707 2061 -1185 2303 95 0 7 chr4 42305128 42305424 -160022923 + AluSg SINE Alu 6 299 -11 5874 131 20 44 chr4 42305424 42306080 -160022267 + Ricksha DNA DNA 2061 2686 -560 1295 173 4 13 chr4 42306081 42306312 -160022035 + AluJo SINE Alu 2 230 -82 2764 147 113 10 chr4 42306349 42306872 -160021475 + Ricksha DNA DNA 2678 3254 0 720 142 9 9 chr4 42307493 42307606 -160020741 - MLT1A1 LTR MaLR -252 113 1 375 292 112 52 chr4 42309148 42309543 -160018804 + L1M4 LINE L1 2429 2852 -3294 1910 128 0 18 chr4 42309543 42309817 -160018530 + AluSx SINE Alu 1 269 -43 375 292 112 52 chr4 42309817 42309842 -160018505 + L1M4 LINE L1 2852 2874 -3272 2206 191 34 46 chr4 42310071 42310573 -160017774 + MLT1D LTR MaLR 8 503 -2 2227 127 10 0 chr4 42310581 42310889 -160017458 + AluSx SINE Alu 1 311 -1 355 343 62 16 chr4 42311093 42311335 -160017012 + L1MEd LINE L1 849 1101 -5018 21 57 0 0 chr4 42311631 42311666 -160016681 + AT_rich Low_complexity Low_complexity 1 35 0 36992 60 14 1 chr4 42312070 42316722 -160011625 + L1P LINE L1 1 4711 -1435 22 35 0 0 chr4 42316886 42316915 -160011432 + GC_rich Low_complexity Low_complexity 1 29 0 30 109 0 0 chr4 42317010 42317138 -160011209 + GC_rich Low_complexity Low_complexity 1 128 0 491 328 65 4 chr4 42317425 42317672 -160010675 + L1ME LINE L1 5561 5822 -299 58 24 0 12 chr4 42318256 42318285 -160010062 + AT_rich Low_complexity Low_complexity 1 29 -53 2258 82 7 14 chr4 42318285 42318576 -160009771 - AluSx SINE Alu -23 289 1 58 24 0 12 chr4 42318576 42318629 -160009718 + AT_rich Low_complexity Low_complexity 29 82 0 1950 125 55 3 chr4 42318640 42318929 -160009418 - AluSx SINE Alu -8 304 1 1702 191 10 3 chr4 42319757 42320056 -160008291 - AluJo SINE Alu -11 301 1 245 301 98 22 chr4 42320170 42320353 -160007994 - L1ME LINE L1 -299 5871 5675 2658 262 137 78 chr4 42320426 42321891 -160006456 - L2 LINE L2 -3 3310 1932 2422 99 0 0 chr4 42321891 42322195 -160006152 + AluY SINE Alu 1 304 -7 1926 155 0 7 chr4 42322205 42322502 -160005845 + AluSx SINE Alu 1 295 -17 2658 262 137 78 chr4 42322502 42323766 -160004581 - L2 LINE L2 -1389 1924 394 629 252 26 41 chr4 42323876 42324247 -160004100 - L1ME LINE L1 -615 5549 5188 2319 99 0 0 chr4 42324303 42324596 -160003751 - AluSx SINE Alu -19 293 1 183 42 0 0 chr4 42324686 42324710 -160003637 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 236 227 0 0 chr4 42324981 42325025 -160003322 + MLT1J1 LTR MaLR 109 152 -294 247 259 74 25 chr4 42325026 42325107 -160003240 + MLT1J1 LTR MaLR 126 210 -236 476 346 91 5 chr4 42325254 42325462 -160002885 + MER115 DNA AcHobo 201 426 -267 600 185 9 0 chr4 42325492 42325600 -160002747 + MER115 DNA AcHobo 489 597 -96 2114 128 0 3 chr4 42325623 42325920 -160002427 - AluSx SINE Alu -16 296 1 1137 123 6 12 chr4 42325951 42326113 -160002234 - AluSx SINE Alu -151 161 1 983 147 21 32 chr4 42326150 42326340 -160002007 - MER53 DNA DNA 0 189 2 380 271 41 25 chr4 42326397 42326519 -160001828 + MLT1J2 LTR MaLR 268 391 -59 2287 93 3 26 chr4 42326542 42326855 -160001492 - AluSp SINE Alu -7 306 1 500 196 131 26 chr4 42327243 42327396 -160000951 - MIR SINE MIR -15 247 79 2179 101 17 0 chr4 42327441 42327601 -160000746 - AluSx SINE Alu -19 293 124 351 0 0 0 chr4 42327601 42327640 -160000707 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2179 101 17 0 chr4 42327640 42327767 -160000580 - AluSx SINE Alu -188 124 1 1356 229 70 11 chr4 42327773 42327972 -160000375 + LTR37A LTR ERV1 34 220 -206 2896 51 19 3 chr4 42327972 42328342 -160000005 - L1PA7 LINE L1 -3 6151 5776 1356 229 70 11 chr4 42328342 42328513 -159999834 + LTR37A LTR ERV1 220 426 0 450 0 0 0 chr4 42328995 42329045 -159999302 + (CA)n Simple_repeat Simple_repeat 2 51 0 1586 132 0 0 chr4 42329596 42329815 -159998532 - AluSq SINE Alu -94 219 1 320 249 294 11 chr4 42329921 42330098 -159998249 - MIR SINE MIR -30 232 6 313 371 7 53 chr4 42331929 42332080 -159996267 + L2 LINE L2 3128 3271 -1 628 270 86 35 chr4 42332811 42333024 -159995323 - L1ME4a LINE L1 -3 6118 5917 2540 26 7 17 chr4 42333024 42333326 -159995021 - AluY SINE Alu -12 299 1 628 270 86 35 chr4 42333326 42333722 -159994625 - L1ME4a LINE L1 -204 5917 5445 202 179 26 0 chr4 42333743 42333782 -159994565 + L2 LINE L2 1695 1734 -1580 259 253 38 13 chr4 42333974 42334053 -159994294 - L1MC4 LINE L1 -339 7703 7623 722 212 75 14 chr4 42334486 42334632 -159993715 + FRAM SINE Alu 1 155 -11 246 304 37 25 chr4 42334692 42334853 -159993494 - L1ME4a LINE L1 -1869 4277 4115 41610 53 11 1 chr4 42334861 42340827 -159987520 - L1PA5 LINE L1 0 6154 131 441 324 0 0 chr4 42343727 42343897 -159984450 + G-rich Low_complexity Low_complexity 1 170 0 526 188 8 8 chr4 42343897 42344014 -159984333 - AluSg1 SINE Alu -191 118 2 2444 96 10 23 chr4 42344016 42344054 -159984293 - L1PB1 LINE L1 -178 5973 5936 1783 220 12 99 chr4 42344054 42344649 -159983698 - L1PA11 LINE L1 -239 5935 5393 2322 91 0 7 chr4 42344652 42344949 -159983398 - AluSg SINE Alu -15 295 1 394 301 130 2 chr4 42346114 42346469 -159981878 - L1ME4a LINE L1 -2799 3347 3073 2566 115 8 11 chr4 42346501 42346866 -159981481 - THE1B LTR MaLR 0 364 1 393 200 9 36 chr4 42346868 42346978 -159981369 + LTR67 LTR ERVL 428 534 -23 623 225 47 35 chr4 42347004 42347173 -159981174 - MIR3 SINE MIR -3 205 35 1040 233 12 33 chr4 42347713 42347958 -159980389 - MIR SINE MIR -21 241 2 523 207 0 0 chr4 42348003 42348085 -159980262 - AluS SINE Alu -231 82 1 21 0 0 0 chr4 42348429 42348450 -159979897 + AT_rich Low_complexity Low_complexity 1 21 0 470 237 26 0 chr4 42348776 42348890 -159979457 + AluSq/x SINE Alu 1 117 -195 226 213 148 57 chr4 42349582 42349704 -159978643 - L1ME3A LINE L1 0 6170 6038 519 247 114 20 chr4 42349717 42349972 -159978375 - L1ME3A LINE L1 -194 5972 5694 * 2829 199 68 6 chr4 42349969 42350431 -159977916 + L1ME1 LINE L1 5514 6184 -150 2162 148 36 14 chr4 42350431 42350795 -159977552 + THE1C LTR MaLR 4 375 0 2829 199 68 6 chr4 42350795 42350957 -159977390 + L1ME1 LINE L1 6184 6334 0 553 260 156 22 chr4 42350952 42351109 -159977238 - L1ME3A LINE L1 -456 5714 5579 * 2051 122 7 3 chr4 42351109 42351397 -159976950 - AluSx SINE Alu -15 297 9 553 260 156 22 chr4 42351397 42351508 -159976839 - L1ME3A LINE L1 -591 5579 5410 463 243 127 51 chr4 42351532 42351824 -159976523 - L1ME3A LINE L1 -823 5323 5010 651 216 0 16 chr4 42351846 42351971 -159976376 + AluJ SINE Alu 3 125 -187 270 0 0 0 chr4 42351976 42352006 -159976341 + (TAA)n Simple_repeat Simple_repeat 2 31 0 1571 138 3 42 chr4 42357935 42358224 -159970123 + AluSx SINE Alu 4 281 -31 1554 78 0 0 chr4 42358239 42358431 -159969916 + L1PB1 LINE L1 5959 6150 -1 1103 302 68 20 chr4 42358630 42359102 -159969245 + L2 LINE L2 2534 3027 -286 294 95 0 0 chr4 42359227 42359269 -159969078 + (A)n Simple_repeat Simple_repeat 1 42 0 2068 118 3 10 chr4 42359657 42359953 -159968394 + AluSq SINE Alu 4 297 -16 21 71 0 0 chr4 42359957 42359999 -159968348 + AT_rich Low_complexity Low_complexity 1 42 0 932 208 0 6 chr4 42360255 42360438 -159967909 + AluJ SINE Alu 131 312 0 344 165 113 31 chr4 42360466 42360532 -159967815 + L1P LINE L1 3711 3789 -2357 354 45 0 0 chr4 42360532 42360576 -159967771 + (CA)n Simple_repeat Simple_repeat 2 45 0 344 165 113 31 chr4 42360576 42360606 -159967741 + L1P LINE L1 3789 3815 -2331 2120 201 55 79 chr4 42361082 42361445 -159966902 - MLT1E1 LTR MaLR -2 652 311 2143 98 3 20 chr4 42361445 42361741 -159966606 - AluSc SINE Alu -18 291 1 2120 201 55 79 chr4 42361741 42362032 -159966315 - MLT1E1 LTR MaLR -343 311 14 1871 132 29 0 chr4 42362069 42362349 -159965998 + AluSg SINE Alu 1 288 -22 586 184 54 134 chr4 42362583 42362699 -159965648 + L1ME2 LINE L1 5771 5895 -269 1203 197 30 57 chr4 42362699 42362999 -159965348 + AluSx SINE Alu 2 293 -9 586 184 54 134 chr4 42362999 42363159 -159965188 + L1ME2 LINE L1 5895 6025 -139 2037 113 3 7 chr4 42363159 42363470 -159964877 - AluSg SINE Alu 0 310 1 1296 148 10 5 chr4 42363470 42363672 -159964675 - L1PA16 LINE L1 -11 6155 5953 208 267 0 0 chr4 42363787 42363832 -159964515 + MIR3 SINE MIR 148 192 -16 2597 134 10 10 chr4 42364002 42364405 -159963942 - MER9 LTR ERVK 0 511 109 184 430 18 0 chr4 42364580 42364694 -159963653 + MIR SINE MIR 37 152 -110 2219 91 10 0 chr4 42364842 42365140 -159963207 + AluY SINE Alu 1 301 -10 277 314 9 9 chr4 42365613 42365718 -159962629 + CT-rich Low_complexity Low_complexity 1 105 0 3146 123 119 4 chr4 42366779 42367275 -159961072 - MER41C LTR ERV1 -1 553 1 1053 150 52 16 chr4 42367318 42367511 -159960836 + L1MC1 LINE L1 453 652 -5774 1140 59 13 0 chr4 42367512 42367665 -159960682 + AluY SINE Alu 147 301 -10 2158 91 10 19 chr4 42367673 42367982 -159960365 + AluSx SINE Alu 1 306 -6 1207 108 0 0 chr4 42367982 42368140 -159960207 + AluSc SINE Alu 132 289 -20 2242 178 45 25 chr4 42368141 42368293 -159960054 + L1MC1 LINE L1 647 794 -5632 2635 140 35 37 chr4 42368293 42368722 -159959625 - MSTC LTR MaLR 0 428 1 2242 178 45 25 chr4 42368722 42369337 -159959010 + L1MC1 LINE L1 794 1663 -4763 1649 158 0 52 chr4 42369767 42370077 -159958270 + AluJo SINE Alu 1 294 -18 2665 118 101 49 chr4 42370577 42371170 -159957177 + L1MC1 LINE L1 1738 2361 -4065 1889 171 36 86 chr4 42371177 42371440 -159956907 + L1MC1 LINE L1 3049 3273 -3153 831 211 0 35 chr4 42371440 42371611 -159956736 - FRAM SINE Alu 0 166 2 1889 171 36 86 chr4 42371611 42371896 -159956451 + L1MC1 LINE L1 3273 3570 -2856 7223 187 39 49 chr4 42371916 42371968 -159956379 + L1MC1 LINE L1 3735 3786 -2827 2187 115 0 3 chr4 42371968 42372273 -159956074 + AluSq SINE Alu 1 304 -9 7223 187 39 49 chr4 42372273 42373595 -159954752 + L1MC1 LINE L1 3786 5119 -1494 2271 111 0 0 chr4 42373595 42373893 -159954454 - AluSx SINE Alu -14 298 1 7223 187 39 49 chr4 42373893 42375305 -159953042 + L1MC1 LINE L1 5119 6485 -128 4038 172 84 12 chr4 42375310 42376726 -159951621 + L1MB7 LINE L1 4654 6173 -11 2341 59 0 7 chr4 42376974 42377290 -159951057 + AluSc SINE Alu 5 318 0 2013 121 3 3 chr4 42378109 42378391 -159949956 + AluSg SINE Alu 1 282 -28 324 0 0 0 chr4 42378391 42378427 -159949920 + (CAAT)n Simple_repeat Simple_repeat 2 37 0 876 274 102 64 chr4 42378427 42378946 -159949401 - MLT1G1 LTR MaLR -13 582 1 1601 103 0 0 chr4 42379592 42379795 -159948552 + AluSg/x SINE Alu 95 297 -15 4457 124 22 6 chr4 42379835 42380505 -159947842 - HSMAR2 DNA Mariner 0 1302 622 1937 153 0 20 chr4 42380516 42380811 -159947536 - AluSg SINE Alu -13 297 9 2306 157 16 0 chr4 42380824 42381194 -159947153 - HSMAR2 DNA Mariner -896 406 31 1591 191 3 10 chr4 42381194 42381492 -159946855 - AluJo SINE Alu -16 296 1 238 189 0 0 chr4 42381540 42381577 -159946770 - Alu SINE Alu -265 37 1 242 308 200 25 chr4 42381698 42381938 -159946409 - L2 LINE L2 -845 2469 2188 229 209 128 35 chr4 42382481 42382567 -159945780 + L2 LINE L2 3216 3309 -4 229 214 60 95 chr4 42383082 42383166 -159945181 - L1MC/D LINE L1 -1886 5922 5842 792 293 44 40 chr4 42383212 42383611 -159944736 - L1MC/D LINE L1 -456 5708 5312 2544 93 30 38 chr4 42383954 42384321 -159944026 - THE1B LTR MaLR 0 364 1 278 206 21 72 chr4 42384349 42384446 -159943901 + HERVE LTR ERV1 4170 4261 -3552 22 0 0 0 chr4 42384691 42384713 -159943634 + AT_rich Low_complexity Low_complexity 1 22 0 28 48 0 0 chr4 42384762 42384804 -159943543 + AT_rich Low_complexity Low_complexity 1 42 0 277 289 73 10 chr4 42385098 42385208 -159943139 + MIR SINE MIR 39 153 -63 354 178 14 27 chr4 42385502 42385575 -159942772 - MER5A DNA MER1_type -117 72 1 29 60 0 0 chr4 42385748 42385798 -159942549 + AT_rich Low_complexity Low_complexity 1 50 0 338 308 100 15 chr4 42385992 42386122 -159942225 + MIR SINE MIR 109 249 -13 338 244 24 41 chr4 42386357 42386480 -159941867 + L1MC5 LINE L1 7805 7925 -36 1240 165 4 48 chr4 42386486 42386716 -159941631 + AluJo SINE Alu 1 220 -92 305 125 0 0 chr4 42386716 42386764 -159941583 + AluJb SINE Alu 86 133 -169 186 43 0 0 chr4 42386780 42386803 -159941544 + (GGAA)n Simple_repeat Simple_repeat 2 24 0 1131 147 0 6 chr4 42386807 42386977 -159941370 + AluSg/x SINE Alu 129 297 -15 195 237 0 0 chr4 42387007 42387045 -159941302 - L2 LINE L2 -6 3266 3229 286 300 93 47 chr4 42387146 42387296 -159941051 - L2 LINE L2 -212 3060 2904 714 106 106 0 chr4 42387461 42387574 -159940773 - L1MA10 LINE L1 -7 6327 6203 2321 109 0 0 chr4 42388217 42388511 -159939836 - AluSx SINE Alu -16 296 3 1551 190 30 73 chr4 42389233 42389479 -159938868 + L1MC4 LINE L1 7459 7714 -328 2493 82 0 0 chr4 42389479 42389782 -159938565 + AluSg SINE Alu 1 303 -7 1551 190 30 73 chr4 42389782 42389839 -159938508 + L1MC4 LINE L1 7714 7772 -270 1955 143 0 3 chr4 42389839 42390126 -159938221 + AluSx SINE Alu 1 286 -26 1551 190 30 73 chr4 42390126 42390248 -159938099 + L1MC4 LINE L1 7772 7867 -175 1650 213 55 91 chr4 42390571 42391140 -159937207 + MER90 LTR ERV1 1 548 -27 865 124 90 0 chr4 42391509 42391654 -159936693 - AluJ SINE Alu -18 294 137 3559 194 68 9 chr4 42391656 42392385 -159935962 - L1MB8 LINE L1 -296 5882 5036 2247 107 0 7 chr4 42392385 42392683 -159935664 + AluSq SINE Alu 1 296 -17 3559 194 68 9 chr4 42392683 42393151 -159935196 - L1MB8 LINE L1 -1142 5036 4597 710 190 183 0 chr4 42393762 42393899 -159934448 - AluJo SINE Alu -4 298 137 728 190 0 49 chr4 42393899 42394015 -159934332 - AluJo SINE Alu -176 136 27 1601 157 240 17 chr4 42394015 42394365 -159933982 - MSTA LTR MaLR 0 428 1 728 190 0 49 chr4 42394365 42394390 -159933957 - AluJo SINE Alu -285 27 2 22 35 0 0 chr4 42394514 42394543 -159933804 + AT_rich Low_complexity Low_complexity 1 29 0 2043 128 3 53 chr4 42394545 42394865 -159933482 + AluSx SINE Alu 1 304 -8 334 100 0 0 chr4 42394870 42394920 -159933427 - L1MB5 LINE L1 -8 6166 6117 232 297 9 18 chr4 42394929 42395040 -159933307 - L1MC4 LINE L1 -1 8041 7932 2320 75 3 10 chr4 42395056 42395351 -159932996 - AluSq SINE Alu -20 293 1 931 183 0 0 chr4 42395632 42395785 -159932562 - FRAM SINE Alu -23 153 1 392 213 145 45 chr4 42395801 42395969 -159932378 - L1MC3 LINE L1 -298 5866 5696 2031 115 20 10 chr4 42395969 42396274 -159932073 - AluSx SINE Alu -4 308 1 2315 95 7 0 chr4 42396291 42396595 -159931752 - AluSc SINE Alu -3 306 1 219 248 23 105 chr4 42396616 42396749 -159931598 + MIR SINE MIR 4 147 -61 2289 84 3 13 chr4 42397505 42397803 -159930544 - AluSx SINE Alu -17 295 1 232 224 118 0 chr4 42398207 42398292 -159930055 + MLT1J LTR MaLR 416 510 -1 217 222 74 0 chr4 42398297 42398351 -159929996 + L3b LINE CR1 1526 1583 0 2530 47 56 19 chr4 42398658 42398979 -159929368 - L1PA8 LINE L1 0 6172 5840 2107 128 6 16 chr4 42399652 42399965 -159928382 - AluJb SINE Alu -2 310 1 342 0 0 0 chr4 42400297 42400335 -159928012 + (TG)n Simple_repeat Simple_repeat 1 38 0 28 0 0 0 chr4 42400724 42400752 -159927595 + AT_rich Low_complexity Low_complexity 1 28 0 2310 105 10 0 chr4 42400868 42401174 -159927173 + AluSx SINE Alu 1 309 -3 183 317 110 0 chr4 42401408 42401490 -159926857 - L2 LINE L2 -3 3310 3220 344 249 127 55 chr4 42401592 42401757 -159926590 + MER5B DNA MER1_type 2 178 0 3331 162 53 12 chr4 42401852 42402458 -159925889 + L1MB5 LINE L1 5544 6174 0 2227 105 3 7 chr4 42402522 42402828 -159925519 + AluSg SINE Alu 1 305 -5 3027 103 32 75 chr4 42403202 42403333 -159925014 + L1PB3 LINE L1 5654 5789 -365 824 145 8 0 chr4 42403333 42403450 -159924897 + FLAM_C SINE Alu 1 118 -15 3027 103 32 75 chr4 42403450 42403681 -159924666 + L1PB3 LINE L1 5789 5990 -164 2208 123 0 7 chr4 42403681 42403989 -159924358 + AluSx SINE Alu 1 306 -6 3027 103 32 75 chr4 42403989 42404148 -159924199 + L1PB3 LINE L1 5990 6154 0 2373 64 0 0 chr4 42404308 42404618 -159923729 + AluY SINE Alu 1 310 0 2719 244 61 26 chr4 42405147 42405913 -159922434 - L1MD2 LINE L1 -17 6342 5550 1411 75 6 0 chr4 42405982 42406155 -159922192 - AluSq SINE Alu -15 298 125 767 113 0 140 chr4 42406600 42406750 -159921597 - FLAM_C SINE Alu 0 133 5 2630 44 0 16 chr4 42406781 42407096 -159921251 + AluY SINE Alu 1 310 -1 2494 195 58 54 chr4 42407899 42408143 -159920204 - L1MC4 LINE L1 -142 7900 7658 2028 135 0 7 chr4 42408143 42408446 -159919901 - AluJb SINE Alu -11 301 1 2494 195 58 54 chr4 42408446 42408682 -159919665 - L1MC4 LINE L1 -384 7658 7424 2365 137 52 3 chr4 42408682 42409048 -159919299 - L1MC1 LINE L1 -5 6328 5945 2494 195 58 54 chr4 42409048 42409086 -159919261 - L1MC4 LINE L1 -618 7424 7388 2465 85 0 0 chr4 42409086 42409391 -159918956 - AluSq SINE Alu -8 305 1 2494 195 58 54 chr4 42409391 42409623 -159918724 - L1MC4 LINE L1 -654 7388 6997 5648 62 16 62 chr4 42409623 42410414 -159917933 - L1PA13 LINE L1 -4 6159 5405 370 46 0 0 chr4 42411211 42411271 -159917076 - MLT2A2 LTR ERVL 0 453 395 2892 110 5 2 chr4 42411619 42412019 -159916328 - MLT2A2 LTR ERVL -51 402 2 450 336 8 16 chr4 42412030 42412155 -159916192 - L2 LINE L2 -8 3264 3141 317 270 101 2 chr4 42412254 42412374 -159915973 - MIR SINE MIR -57 151 19 203 257 68 40 chr4 42413011 42413085 -159915262 - L2 LINE L2 -4 3268 3193 434 284 0 98 chr4 42413311 42413526 -159914821 + L2 LINE L2 3116 3309 -4 180 0 0 0 chr4 42413757 42413777 -159914570 + (T)n Simple_repeat Simple_repeat 1 20 0 937 176 6 0 chr4 42415018 42415177 -159913170 + AluJb SINE Alu 138 297 -15 268 240 125 31 chr4 42415479 42415575 -159912772 - L2 LINE L2 -6 3307 3203 2087 121 3 0 chr4 42416759 42417073 -159911274 + AluSx SINE Alu 1 315 0 260 296 10 31 chr4 42417137 42417235 -159911112 - MER5A DNA MER1_type -6 183 88 1607 185 67 34 chr4 42417300 42417657 -159910690 - MLT1E LTR MaLR -2 591 223 1022 185 83 11 chr4 42418144 42418409 -159909938 - L1P4 LINE L1 -626 5537 5254 1611 217 55 81 chr4 42418412 42418592 -159909755 - L1MC4 LINE L1 -1033 7009 6826 1699 148 14 14 chr4 42418592 42418869 -159909478 - AluJb SINE Alu -1 311 35 1611 217 55 81 chr4 42418869 42419255 -159909092 - L1MC4 LINE L1 -1216 6826 6458 2137 104 10 0 chr4 42419781 42420070 -159908277 + AluSx SINE Alu 1 292 -20 23 33 0 0 chr4 42420095 42420125 -159908222 + AT_rich Low_complexity Low_complexity 1 30 0 261 0 0 0 chr4 42420200 42420229 -159908118 + (CA)n Simple_repeat Simple_repeat 1 29 0 2345 94 0 0 chr4 42420316 42420613 -159907734 - AluSq SINE Alu -16 297 1 586 223 74 7 chr4 42420617 42420765 -159907582 + LTR41 LTR ERVL 5 162 -611 851 204 104 16 chr4 42420802 42421124 -159907223 + LTR40b LTR ERVL 77 447 -15 323 218 42 11 chr4 42421151 42421246 -159907101 + LTR41 LTR ERVL 684 795 0 414 222 23 55 chr4 42421752 42421923 -159906424 + MIR SINE MIR 40 244 -18 786 238 40 0 chr4 42422334 42422485 -159905862 - MER58A DNA MER1_type 0 162 6 26 0 0 0 chr4 42422623 42422649 -159905698 + AT_rich Low_complexity Low_complexity 1 26 0 834 131 0 8 chr4 42422650 42422772 -159905575 - FLAM_C SINE Alu -10 133 13 36 53 0 0 chr4 42423125 42423182 -159905165 + AT_rich Low_complexity Low_complexity 1 57 0 1845 181 3 0 chr4 42423597 42423906 -159904441 - AluSx SINE Alu 0 312 3 236 281 65 98 chr4 42424092 42424323 -159904024 - L1MEd LINE L1 -5733 386 172 2066 133 13 3 chr4 42424323 42424624 -159903723 - AluJb SINE Alu -6 306 3 236 281 65 98 chr4 42424624 42424791 -159903556 - L1MEd LINE L1 -5947 172 1 1865 155 0 29 chr4 42425082 42425392 -159902955 + AluJb SINE Alu 1 301 -11 274 306 174 49 chr4 42425578 42425682 -159902665 + MER5B DNA MER1_type 17 145 -33 3876 112 4 4 chr4 42425682 42426193 -159902154 + MER9 LTR ERVK 1 511 0 274 306 174 49 chr4 42426193 42426232 -159902115 + MER5B DNA MER1_type 145 178 0 208 267 0 0 chr4 42426364 42426409 -159901938 - MIR3 SINE MIR -16 192 148 1296 148 10 5 chr4 42426524 42426726 -159901621 + L1PA16 LINE L1 5953 6155 -11 2154 84 0 84 chr4 42426726 42427047 -159901300 + AluSg SINE Alu 1 294 -16 1744 130 65 24 chr4 42427260 42427552 -159900795 - AluJo SINE Alu -7 305 2 21 36 0 0 chr4 42427704 42427732 -159900615 + AT_rich Low_complexity Low_complexity 1 28 0 1571 155 7 63 chr4 42428474 42428777 -159899570 + AluJo SINE Alu 6 291 -21 1548 141 72 4 chr4 42428903 42429165 -159899182 - AluJo SINE Alu -17 295 16 2184 118 0 19 chr4 42429200 42429523 -159898824 - MER84 LTR ERVI -190 317 1 189 282 0 0 chr4 42430104 42430143 -159898204 - L2 LINE L2 -9 3263 3225 7824 189 43 25 chr4 42430412 42433126 -159895221 - L1MB5 LINE L1 -46 6128 3366 2265 76 6 28 chr4 42433395 42433712 -159894635 - AluY SINE Alu -1 310 1 731 265 85 18 chr4 42433747 42433970 -159894377 + MIR SINE MIR 19 256 -6 1944 137 10 3 chr4 42436624 42436930 -159891417 - AluSx SINE Alu -4 308 1 2280 102 0 0 chr4 42437467 42437761 -159890586 - AluSq SINE Alu -19 294 1 682 243 85 11 chr4 42437898 42438087 -159890260 + MIR SINE MIR 47 249 -13 1887 130 53 3 chr4 42438158 42438442 -159889905 - AluSx SINE Alu -14 298 1 1365 147 8 66 chr4 42438936 42439100 -159889247 - AluJo SINE Alu -30 282 137 2181 118 0 3 chr4 42439100 42439405 -159888942 + AluSg SINE Alu 1 304 -6 1365 147 8 66 chr4 42439405 42439498 -159888849 - AluJo SINE Alu -175 137 40 2344 99 0 7 chr4 42439880 42440184 -159888163 - AluSg SINE Alu -8 302 1 1475 183 183 35 chr4 42441727 42442125 -159886222 + MSTB2 LTR MaLR 1 457 0 245 285 44 38 chr4 42442284 42442442 -159885905 + L2 LINE L2 2745 2903 -411 228 234 160 21 chr4 42442835 42442929 -159885418 + MSTB2 LTR MaLR 202 308 -149 296 284 0 0 chr4 42443292 42443359 -159884988 - HsTC2 DNA Tc2 -3 1895 1829 235 81 27 0 chr4 42443388 42443425 -159884922 - HsTC2 DNA Tc2 -177 1721 1684 386 244 185 0 chr4 42443432 42443551 -159884796 - HsTC2 DNA Tc2 -1757 141 1 429 256 169 17 chr4 42443609 42443781 -159884566 - MIR SINE MIR -6 256 59 649 225 54 0 chr4 42444811 42444940 -159883407 + MIR SINE MIR 4 139 -123 28 29 0 0 chr4 42445249 42445284 -159883063 + AT_rich Low_complexity Low_complexity 1 35 0 1886 149 0 30 chr4 42445467 42445768 -159882579 + AluJb SINE Alu 1 292 -20 1289 125 0 11 chr4 42446285 42446469 -159881878 + AluSq SINE Alu 38 219 -94 586 124 7 109 chr4 42446469 42446606 -159881741 + AluSg/x SINE Alu 186 308 -2 2216 103 0 10 chr4 42446635 42446936 -159881411 + AluSx SINE Alu 1 298 -14 282 238 69 39 chr4 42446969 42447050 -159881297 - MIR3 SINE MIR -52 156 73 31 68 0 0 chr4 42448159 42448218 -159880129 + AT_rich Low_complexity Low_complexity 1 59 0 180 77 0 0 chr4 42448819 42448845 -159879502 + (TGGG)n Simple_repeat Simple_repeat 4 29 0 2203 130 0 0 chr4 42448886 42449194 -159879153 + AluSx SINE Alu 1 308 -4 996 212 125 23 chr4 42449202 42449466 -159878881 + AluJo SINE Alu 1 291 -11 1023 242 147 58 chr4 42449711 42450226 -159878121 - L2 LINE L2 -1 3312 2733 261 0 0 0 chr4 42450461 42450490 -159877857 + (TG)n Simple_repeat Simple_repeat 2 30 0 451 217 17 11 chr4 42450490 42450665 -159877682 + (TA)n Simple_repeat Simple_repeat 2 177 0 1770 193 0 0 chr4 42450781 42451077 -159877270 + AluJb SINE Alu 1 296 -16 2289 92 3 0 chr4 42451165 42451457 -159876890 + AluSc SINE Alu 1 293 -16 500 323 54 79 chr4 42451582 42451951 -159876396 - L3 LINE CR1 -431 1146 787 1656 142 32 79 chr4 42452233 42452549 -159875798 - AluJb SINE Alu -11 301 1 21 0 0 0 chr4 42453041 42453062 -159875285 + AT_rich Low_complexity Low_complexity 1 21 0 270 220 0 0 chr4 42453066 42453125 -159875222 + L2 LINE L2 2799 2857 -457 901 296 104 50 chr4 42453163 42453825 -159874522 - L2 LINE L2 -1213 2101 1404 342 256 49 0 chr4 42454233 42454315 -159874032 + L1MC4 LINE L1 6618 6703 -1339 309 51 0 0 chr4 42454316 42454355 -159873992 + (TG)n Simple_repeat Simple_repeat 2 40 0 1980 149 10 3 chr4 42454372 42454667 -159873680 - AluSx SINE Alu -15 297 1 384 22 0 0 chr4 42455086 42455131 -159873216 + (TA)n Simple_repeat Simple_repeat 2 46 0 330 353 16 1 chr4 42455618 42455806 -159872541 + MIR SINE MIR 38 252 -10 482 306 75 57 chr4 42456537 42456802 -159871545 - L2 LINE L2 -232 3081 2812 973 146 0 19 chr4 42456961 42457119 -159871228 - AluSg/x SINE Alu -23 289 135 3316 208 82 6 chr4 42457676 42458497 -159869850 - L1MC4 LINE L1 -344 7698 6816 354 201 7 50 chr4 42458961 42459100 -159869247 + L1ME4a LINE L1 5984 6116 -5 208 158 0 53 chr4 42459358 42459415 -159868932 + A-rich Low_complexity Low_complexity 2 55 0 21 71 0 0 chr4 42459551 42459593 -159868754 + AT_rich Low_complexity Low_complexity 1 42 0 266 311 23 40 chr4 42459621 42459798 -159868549 - L1MC4 LINE L1 -1904 5904 5731 294 179 0 0 chr4 42459800 42459856 -159868491 + (TA)n Simple_repeat Simple_repeat 1 56 0 236 209 0 15 chr4 42459969 42460036 -159868311 + (TATG)n Simple_repeat Simple_repeat 4 69 0 898 299 160 39 chr4 42460103 42461474 -159866873 - L1MC4 LINE L1 -608 5554 4020 2128 112 7 7 chr4 42461530 42461824 -159866523 - AluSx SINE Alu -18 294 1 3121 208 64 13 chr4 42461933 42462697 -159865650 - L1MB7 LINE L1 -11 6173 5371 1805 126 7 48 chr4 42463462 42463771 -159864576 + AluJo SINE Alu 1 296 -16 617 162 0 0 chr4 42464047 42464146 -159864201 + AluJb SINE Alu 27 125 -187 2145 139 0 3 chr4 42464158 42464468 -159863879 + AluSx SINE Alu 1 309 -3 2531 131 0 1 chr4 42464468 42464838 -159863509 + L1PA16 LINE L1 5776 6146 -20 1134 60 0 0 chr4 42465192 42465326 -159863021 + AluSq/x SINE Alu 1 134 -179 2197 107 7 3 chr4 42465329 42465638 -159862709 + AluSx SINE Alu 3 312 0 1824 165 0 28 chr4 42465685 42466006 -159862341 + AluJb SINE Alu 1 312 0 365 211 51 64 chr4 42466042 42466245 -159862102 - AluSc SINE Alu 0 325 125 594 181 9 0 chr4 42466364 42466469 -159861878 - AluSq/x SINE Alu -207 106 1 3713 208 75 6 chr4 42466470 42467366 -159860981 - L1MC4 LINE L1 -269 7773 6816 354 201 7 50 chr4 42467830 42467969 -159860378 + L1ME4a LINE L1 5984 6116 -5 208 158 0 53 chr4 42468227 42468284 -159860063 + A-rich Low_complexity Low_complexity 2 55 0 21 71 0 0 chr4 42468421 42468463 -159859884 + AT_rich Low_complexity Low_complexity 1 42 0 294 305 23 40 chr4 42468491 42468668 -159859679 - L1MC4 LINE L1 -1904 5904 5731 273 196 0 0 chr4 42468670 42468726 -159859621 + (TA)n Simple_repeat Simple_repeat 1 56 0 236 209 0 15 chr4 42468839 42468906 -159859441 + (TATG)n Simple_repeat Simple_repeat 4 69 0 898 299 160 39 chr4 42468973 42470344 -159858003 - L1MC4 LINE L1 -608 5554 4020 2128 112 7 7 chr4 42470400 42470694 -159857653 - AluSx SINE Alu -18 294 1 3135 208 63 12 chr4 42470803 42471567 -159856780 - L1MB7 LINE L1 -11 6173 5371 1777 129 7 52 chr4 42472333 42472643 -159855704 + AluJo SINE Alu 1 296 -16 1462 167 0 72 chr4 42472920 42473031 -159855316 + AluJb SINE Alu 27 144 -168 2269 116 0 3 chr4 42473031 42473333 -159855014 + AluSx SINE Alu 1 301 -11 1462 167 0 72 chr4 42473333 42473514 -159854833 + AluJb SINE Alu 144 298 -14 2239 100 3 3 chr4 42473570 42473869 -159854478 + AluSq SINE Alu 1 299 -14 922 198 33 0 chr4 42474454 42474636 -159853711 - MER5A DNA MER1_type -1 188 1 703 341 90 34 chr4 42474956 42475492 -159852855 + L2 LINE L2 2366 2931 -383 294 278 111 11 chr4 42475778 42475868 -159852479 + MIR3 SINE MIR 3 101 -107 286 345 60 0 chr4 42475923 42476039 -159852308 + MIR3 SINE MIR 85 207 -1 286 250 112 35 chr4 42476769 42476885 -159851462 - MIR SINE MIR -74 188 64 2279 120 0 0 chr4 42477108 42477417 -159850930 + AluSx SINE Alu 1 309 -3 351 274 40 50 chr4 42479213 42479414 -159848933 + L1ME LINE L1 5576 5774 -347 220 261 116 0 chr4 42479955 42480024 -159848323 - MIR SINE MIR -95 113 37 293 286 0 0 chr4 42481010 42481087 -159847260 - MIR SINE MIR -27 235 159 597 68 57 0 chr4 42481528 42481616 -159846731 - L1PA13 LINE L1 -5 6158 6066 949 181 0 33 chr4 42482634 42482816 -159845531 - AluJo SINE Alu -15 297 122 23 0 0 0 chr4 42483552 42483575 -159844772 + AT_rich Low_complexity Low_complexity 1 23 0 30 27 0 0 chr4 42483695 42483732 -159844615 + AT_rich Low_complexity Low_complexity 1 37 0 1938 154 10 0 chr4 42483782 42484074 -159844273 - AluSx SINE Alu -17 295 1 23 78 0 0 chr4 42484138 42484189 -159844158 + AT_rich Low_complexity Low_complexity 1 51 0 437 227 169 5 chr4 42484264 42484467 -159843880 - L1ME LINE L1 -586 5576 5342 216 0 0 0 chr4 42484467 42484491 -159843856 + (TTCA)n Simple_repeat Simple_repeat 3 26 0 1194 281 78 17 chr4 42484496 42485215 -159843132 - L2 LINE L2 -12 3301 2534 1838 135 0 24 chr4 42485396 42485906 -159842441 - AluSx SINE Alu 0 503 1 3727 77 7 75 chr4 42485411 42485916 -159842431 - L1PB1 LINE L1 -1 6150 5997 2168 119 3 0 chr4 42485916 42486209 -159842138 - AluSg SINE Alu -16 294 1 3727 77 7 75 chr4 42486209 42486589 -159841758 - L1PB1 LINE L1 -154 5997 5593 2095 145 13 26 chr4 42486617 42486838 -159841509 - L1PB1 LINE L1 -542 5609 5387 2450 67 0 13 chr4 42486838 42487138 -159841209 - AluY SINE Alu -15 296 1 2095 145 13 26 chr4 42487138 42487508 -159840839 - L1PB1 LINE L1 -764 5387 5030 2298 109 3 0 chr4 42488957 42489260 -159839087 - AluSp SINE Alu -5 308 5 411 283 70 108 chr4 42489272 42489587 -159838760 - L3 LINE CR1 -905 672 370 241 296 49 0 chr4 42489606 42489687 -159838660 - MIR SINE MIR -67 141 57 478 185 33 0 chr4 42489690 42489782 -159838565 + MLT1J2 LTR MaLR 6 100 -350 1933 102 0 79 chr4 42490370 42490674 -159837673 + AluSc SINE Alu 23 302 -7 208 331 42 0 chr4 42491107 42491210 -159837137 - MER5B DNA MER1_type -26 163 46 1213 208 47 15 chr4 42491226 42491584 -159836763 - L1MA6 LINE L1 -11 6289 5933 1059 164 72 0 chr4 42491653 42491848 -159836499 - MER3 DNA MER1_type 0 209 1 485 296 34 48 chr4 42491849 42492055 -159836292 + MIR SINE MIR 32 234 -28 404 279 53 10 chr4 42493779 42493987 -159834360 + L1ME4a LINE L1 5641 5857 -264 1571 271 27 7 chr4 42494116 42494530 -159833817 + MLT1K LTR MaLR 161 582 -6 370 229 112 22 chr4 42494551 42494730 -159833617 + L1ME4a LINE L1 5879 6073 -48 309 51 0 0 chr4 42494747 42494790 -159833557 + (TG)n Simple_repeat Simple_repeat 1 82 0 309 51 0 0 chr4 42494790 42494829 -159833518 + (TG)n Simple_repeat Simple_repeat 2 40 0 859 263 134 37 chr4 42494931 42495387 -159832960 + MLT1J LTR MaLR 12 511 0 401 237 53 9 chr4 42495638 42495752 -159832595 + LTR67 LTR ERVL 439 557 0 324 0 0 0 chr4 42495809 42495845 -159832502 + (CA)n Simple_repeat Simple_repeat 1 36 0 2126 127 0 23 chr4 42496300 42496607 -159831740 + AluSx SINE Alu 1 300 -12 2938 155 19 8 chr4 42496846 42497380 -159830967 + L1MC3 LINE L1 7246 7785 0 682 198 73 57 chr4 42497383 42497560 -159830787 + MIR SINE MIR 62 241 -21 322 200 0 0 chr4 42497591 42497651 -159830696 - Tigger5 DNA MER2_type 0 2323 2264 * 354 171 13 26 chr4 42497647 42497723 -159830624 + Tigger5 DNA MER2_type 2242 2316 -7 278 192 0 0 chr4 42497726 42497778 -159830569 - Tigger5 DNA MER2_type -2244 79 28 2324 88 7 0 chr4 42498629 42498926 -159829421 + AluSx SINE Alu 1 299 -13 26 0 0 0 chr4 42499993 42500019 -159828328 + AT_rich Low_complexity Low_complexity 1 26 0 26 30 0 0 chr4 42501159 42501192 -159827155 + AT_rich Low_complexity Low_complexity 1 33 0 282 278 90 38 chr4 42503764 42503816 -159824531 + MER20B DNA MER1_type 4 52 -731 351 0 0 0 chr4 42503816 42503855 -159824492 + (TGG)n Simple_repeat Simple_repeat 2 40 0 282 278 90 38 chr4 42503855 42503935 -159824412 + MER20B DNA MER1_type 52 143 -640 353 267 164 45 chr4 42504087 42504379 -159823968 - L1MC4a LINE L1 -1879 5929 5603 1259 182 0 0 chr4 42504379 42504577 -159823770 - AluY SINE Alu -11 300 103 1902 110 0 4 chr4 42504577 42504832 -159823515 - AluSx SINE Alu -58 254 1 500 226 77 10 chr4 42504837 42505045 -159823302 - L1MC4a LINE L1 -681 5483 5262 791 248 128 16 chr4 42505270 42505520 -159822827 + L2 LINE L2 3036 3313 0 31 76 0 0 chr4 42505572 42505638 -159822709 + AT_rich Low_complexity Low_complexity 1 66 0 1546 173 59 0 chr4 42505674 42505946 -159822401 - AluJb SINE Alu -24 288 1 224 308 77 0 chr4 42506599 42506677 -159821670 + MIR3 SINE MIR 106 189 -19 22 35 0 0 chr4 42507086 42507115 -159821232 + AT_rich Low_complexity Low_complexity 1 29 0 234 341 186 21 chr4 42507223 42507595 -159820752 - L2 LINE L2 -570 2744 2312 1461 174 87 0 chr4 42507896 42508149 -159820198 + AluSx SINE Alu 1 275 -37 22 0 0 0 chr4 42508479 42508501 -159819846 + AT_rich Low_complexity Low_complexity 1 22 0 342 220 211 0 chr4 42509619 42509728 -159818619 + MIR3 SINE MIR 8 139 -69 270 329 48 72 chr4 42509828 42509995 -159818352 - MIR SINE MIR -50 212 50 227 274 121 24 chr4 42510050 42510174 -159818173 - MIR SINE MIR -63 199 64 203 354 52 66 chr4 42511646 42511858 -159816489 + L2 LINE L2 2669 2877 -437 1892 127 7 11 chr4 42511877 42512184 -159816163 + AluSg SINE Alu 1 306 0 180 0 0 0 chr4 42512562 42512582 -159815765 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 2155 116 0 10 chr4 42514200 42514502 -159813845 - AluSx SINE Alu -13 299 1 238 291 0 81 chr4 42514502 42514551 -159813796 + L2 LINE L2 3189 3231 -41 1317 192 10 54 chr4 42514551 42514883 -159813464 - AluJb SINE Alu 0 319 1 238 291 0 81 chr4 42514883 42514918 -159813429 + L2 LINE L2 3231 3267 -5 943 236 80 58 chr4 42515168 42515345 -159813002 + MLT1I LTR MaLR 3 175 -234 2314 105 7 0 chr4 42515345 42515650 -159812697 + AluSq SINE Alu 3 309 -4 943 236 80 58 chr4 42515650 42515870 -159812477 + MLT1I LTR MaLR 175 409 0 290 326 95 0 chr4 42516284 42516431 -159811916 - MIR SINE MIR -101 161 1 2246 112 0 0 chr4 42516857 42517153 -159811194 - AluSx SINE Alu -16 296 1 282 220 121 21 chr4 42517193 42517334 -159811013 - MER103 DNA DNA -1 165 11 794 160 0 0 chr4 42517689 42517820 -159810527 - FLAM_C SINE Alu 0 133 3 407 322 132 58 chr4 42518920 42519504 -159808843 - L1M2 LINE L1 -5450 1399 773 206 267 0 0 chr4 42519620 42519680 -159808667 + G-rich Low_complexity Low_complexity 2 61 0 200 333 14 14 chr4 42520163 42520232 -159808115 - L2 LINE L2 -76 3196 3128 2125 126 0 3 chr4 42521104 42521420 -159806927 + AluSc SINE Alu 1 309 0 719 229 254 22 chr4 42521588 42521954 -159806393 + L2 LINE L2 2863 3313 0 2015 142 0 0 chr4 42522102 42522397 -159805950 + AluSx SINE Alu 1 295 -17 2227 112 3 3 chr4 42523207 42523511 -159804836 - AluSc SINE Alu -5 304 1 1344 144 194 11 chr4 42523776 42524039 -159804308 - AluJo SINE Alu -1 311 1 366 337 67 70 chr4 42524461 42524919 -159803428 + L2 LINE L2 2692 3180 -92 303 28 0 0 chr4 42524931 42524967 -159803380 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 2231 62 0 78 chr4 42525323 42525644 -159802703 + AluY SINE Alu 1 296 -15 2131 92 43 13 chr4 42526882 42527185 -159801162 + AluSq SINE Alu 1 312 -1 1116 192 25 16 chr4 42527541 42527786 -159800561 - L1ME1 LINE L1 -5 6161 5915 425 316 55 73 chr4 42527789 42528061 -159800286 + L2 LINE L2 3042 3308 -5 1859 120 15 99 chr4 42528227 42528560 -159799787 + AluJb SINE Alu 1 305 -7 283 238 0 159 chr4 42528654 42528710 -159799637 + MIR SINE MIR 136 199 -63 712 111 86 0 chr4 42528710 42528827 -159799520 + L1PB1 LINE L1 6025 6151 0 283 238 0 159 chr4 42528827 42528866 -159799481 + MIR SINE MIR 199 201 -61 704 172 16 160 chr4 42528866 42528964 -159799383 + MER20 DNA MER1_type 1 41 -178 1554 197 25 0 chr4 42528964 42529238 -159799109 + AluJo SINE Alu 1 281 -31 704 172 16 160 chr4 42529238 42529395 -159798952 + MER20 DNA MER1_type 41 219 0 283 238 0 159 chr4 42529395 42529449 -159798898 + MIR SINE MIR 201 262 0 591 318 35 10 chr4 42529530 42529728 -159798619 + MIR SINE MIR 48 250 -12 2289 111 0 3 chr4 42530488 42530795 -159797552 + AluSc SINE Alu 1 306 -3 250 294 42 7 chr4 42530930 42531073 -159797274 + L1ME LINE L1 5181 5328 -818 306 278 122 0 chr4 42531080 42531195 -159797152 + L1ME LINE L1 5352 5480 -641 1673 177 31 7 chr4 42531334 42531628 -159796719 - AluJo SINE Alu -11 301 1 2269 98 16 7 chr4 42532372 42532679 -159795668 - AluSg SINE Alu 0 310 1 207 133 0 0 chr4 42533515 42533560 -159794787 + (TCTA)n Simple_repeat Simple_repeat 4 48 0 803 148 66 0 chr4 42534091 42534213 -159794134 - FLAM_A SINE Alu -2 131 2 206 170 0 21 chr4 42534797 42534844 -159793503 + CT-rich Low_complexity Low_complexity 1 46 0 6284 145 23 17 chr4 42534850 42536752 -159791595 - L1MA4 LINE L1 -21 6921 5009 2218 126 0 3 chr4 42536752 42537061 -159791286 - AluSx SINE Alu -4 308 1 9049 202 40 36 chr4 42537062 42539469 -159788878 - L1MA4 LINE L1 -2472 4316 1764 2071 118 0 36 chr4 42539469 42539773 -159788574 - AluSq SINE Alu -20 293 1 9049 202 40 36 chr4 42539773 42541528 -159786819 - L1MA4 LINE L1 -5024 1764 17 2951 199 22 17 chr4 42541540 42542669 -159785678 - L1MC2 LINE L1 -517 5827 4697 301 134 104 0 chr4 42542669 42542736 -159785611 - L1M4c LINE L1 -5507 1139 1066 1980 227 41 98 chr4 42542888 42542979 -159785368 - L1M4c LINE L1 -5475 1067 972 207 0 0 0 chr4 42542979 42543002 -159785345 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1761 164 4 4 chr4 42543005 42543285 -159785062 - AluJb SINE Alu -32 280 1 1980 227 41 98 chr4 42543285 42543997 -159784350 - L1M4c LINE L1 -5572 970 322 227 231 19 0 chr4 42547735 42547787 -159780560 + L2 LINE L2 3261 3313 0 2165 125 0 10 chr4 42548621 42548925 -159779422 + AluSx SINE Alu 1 301 -11 239 173 0 19 chr4 42549112 42549164 -159779183 + (CAA)n Simple_repeat Simple_repeat 2 52 0 422 300 68 46 chr4 42549274 42549554 -159778793 + L2 LINE L2 3028 3313 0 23 0 0 0 chr4 42549621 42549644 -159778703 + GC_rich Low_complexity Low_complexity 1 23 0 225 164 73 0 chr4 42550003 42550058 -159778289 + A-rich Low_complexity Low_complexity 2 60 0 5747 118 101 72 chr4 42550285 42550521 -159777826 - Tigger3b DNA MER2_type -1824 1204 976 2290 131 48 14 chr4 42550521 42550873 -159777474 + THE1B LTR MaLR 1 364 0 5747 118 101 72 chr4 42550873 42551325 -159777022 - Tigger3b DNA MER2_type -2052 976 539 183 42 0 0 chr4 42551325 42551349 -159776998 + (CA)n Simple_repeat Simple_repeat 2 25 0 5747 118 101 72 chr4 42551349 42551829 -159776518 - Tigger3b DNA MER2_type -2489 539 1 1159 197 150 8 chr4 42551829 42552062 -159776285 - MLT1A1 LTR MaLR -32 333 68 497 234 11 0 chr4 42552062 42552156 -159776191 + MER2 DNA MER2_type 1 95 -250 1121 185 45 0 chr4 42552159 42552359 -159775988 + AluJo SINE Alu 85 293 -19 881 169 97 68 chr4 42552359 42552607 -159775740 + MER2 DNA MER2_type 91 345 0 415 127 0 28 chr4 42552607 42552678 -159775669 - MLT1A1 LTR MaLR -296 69 1 1234 167 23 5 chr4 42552894 42553115 -159775232 - MLT1C LTR MaLR 0 467 243 498 221 44 108 chr4 42553365 42553614 -159774733 - MLT1C LTR MaLR -229 238 6 347 246 36 96 chr4 42554391 42554558 -159773789 - MLT1J LTR MaLR 0 511 355 199 204 0 23 chr4 42555415 42555459 -159772888 - L2 LINE L2 -1792 1522 1480 22 0 0 0 chr4 42555501 42555523 -159772824 + AT_rich Low_complexity Low_complexity 1 22 0 2304 107 3 0 chr4 42555527 42555836 -159772511 + AluSp SINE Alu 1 310 -3 482 235 25 101 chr4 42555870 42556108 -159772239 + L1ME4a LINE L1 5696 5915 -206 26 0 0 0 chr4 42556291 42556317 -159772030 + AT_rich Low_complexity Low_complexity 1 26 0 2098 137 3 0 chr4 42556520 42556813 -159771534 + AluSq SINE Alu 1 294 -19 31 26 0 0 chr4 42556813 42556851 -159771496 + AT_rich Low_complexity Low_complexity 1 38 0 353 250 12 0 chr4 42556873 42556953 -159771394 - MER63 DNA MER1_type -311 751 671 2141 168 28 14 chr4 42557028 42557391 -159770956 + MSTA LTR MaLR 61 428 0 10304 156 35 2 chr4 42557391 42558989 -159769358 + MSTA-int LTR MaLR 1 1651 0 2362 162 43 24 chr4 42558989 42559409 -159768938 + MSTA LTR MaLR 1 428 0 520 299 78 0 chr4 42559410 42559767 -159768580 + L1ME LINE L1 5285 5701 -420 1965 194 80 48 chr4 42560182 42560352 -159767995 + L1MB8 LINE L1 3943 4106 -2040 1570 183 3 40 chr4 42560352 42560652 -159767695 - AluJo SINE Alu -23 289 1 1965 194 80 48 chr4 42560652 42560801 -159767546 + L1MB8 LINE L1 4106 4249 -1897 1607 205 57 17 chr4 42560801 42561152 -159767195 - MLT1A1 LTR MaLR 0 365 1 1965 194 80 48 chr4 42561152 42561408 -159766939 + L1MB8 LINE L1 4249 4537 -1609 1033 119 0 7 chr4 42561408 42561551 -159766796 - AluSg/x SINE Alu -8 304 163 274 204 0 0 chr4 42561551 42561600 -159766747 + L1MB8 LINE L1 5510 5558 -622 541 222 9 0 chr4 42561604 42561712 -159766635 + LTR47A LTR ERVL 6 114 -338 293 234 0 0 chr4 42561785 42561849 -159766498 - HERVL18 LTR ERVL -4723 1324 1261 2180 150 62 36 chr4 42561915 42562336 -159766011 - MER66B LTR ERV1 -54 432 1 319 197 53 0 chr4 42563120 42563196 -159765151 + MER4B-int LTR ERV1 5996 6075 -683 1882 211 6 64 chr4 42563197 42563667 -159764680 + LTR47B LTR ERVL 1 443 0 3002 154 76 36 chr4 42563667 42564269 -159764078 + L1MB8 LINE L1 5553 6178 0 904 175 118 5 chr4 42564487 42564705 -159763642 + MER33 DNA MER1_type 1 219 -105 249 241 19 0 chr4 42564844 42564898 -159763449 - MIR SINE MIR -195 67 13 360 202 18 9 chr4 42564900 42565015 -159763332 - L1ME LINE L1 -5182 888 782 6685 75 13 46 chr4 42565027 42566912 -159761435 - SVA Other Other -518 1379 1 2047 133 0 3 chr4 42567066 42567399 -159760948 - AluSx SINE Alu 0 332 1 2036 112 4 0 chr4 42569202 42569479 -159758868 + AluSp SINE Alu 28 305 -8 8091 21 0 0 chr4 42569765 42571233 -159757114 - L1PA3 LINE L1 -3 6152 4680 2088 78 0 58 chr4 42571388 42571682 -159756665 - AluY SINE Alu 0 311 35 2218 104 3 0 chr4 42571911 42572199 -159756148 - AluSx SINE Alu -23 289 1 287 338 42 7 chr4 42572241 42572383 -159755964 - MIR SINE MIR -50 212 66 1880 170 7 0 chr4 42572398 42572692 -159755655 - AluJb SINE Alu -16 296 1 1006 221 154 78 chr4 42572821 42573255 -159755092 + MLT1D LTR MaLR 1 505 0 1261 159 18 14 chr4 42573476 42573696 -159754651 + AluJo SINE Alu 90 310 -2 2252 98 3 7 chr4 42574243 42574540 -159753807 - AluSg SINE Alu -14 296 1 463 236 63 81 chr4 42574847 42575021 -159753326 + L2 LINE L2 3097 3267 -5 22 35 0 0 chr4 42575097 42575126 -159753221 + AT_rich Low_complexity Low_complexity 1 29 0 230 143 0 41 chr4 42575323 42575372 -159752975 - L1M LINE L1 -791 5389 5343 839 182 0 14 chr4 42575376 42575519 -159752828 - L1PB4 LINE L1 -11 6145 6005 344 227 13 0 chr4 42575712 42575787 -159752560 - MLT1G LTR MaLR 0 555 480 258 130 43 0 chr4 42575816 42575862 -159752485 - L1M3 LINE L1 -377 5791 5744 258 143 0 0 chr4 42575863 42575912 -159752435 + (TCTA)n Simple_repeat Simple_repeat 1 49 0 2688 165 25 34 chr4 42575916 42576205 -159752142 - L1M3 LINE L1 -389 5779 5489 1927 107 10 45 chr4 42576205 42576520 -159751827 - AluSq SINE Alu 0 308 4 2688 165 25 34 chr4 42576520 42576834 -159751513 - L1M3 LINE L1 -679 5489 5180 719 276 53 31 chr4 42576834 42577059 -159751288 - MLT1G LTR MaLR -293 297 68 2238 106 3 0 chr4 42577074 42577366 -159750981 - AluSx SINE Alu -19 293 1 295 284 46 0 chr4 42577417 42577526 -159750821 + HAL1 LINE L1 1475 1588 -919 448 262 107 40 chr4 42577902 42578608 -159749739 + L1MEc LINE L1 2037 2765 -3450 2384 83 0 16 chr4 42578627 42578941 -159749406 + AluY SINE Alu 1 309 -2 1479 127 38 8 chr4 42578949 42579186 -159749161 + THE1B LTR MaLR 1 244 -120 1628 146 18 7 chr4 42579529 42579803 -159748544 - AluSc SINE Alu -32 277 1 236 241 37 0 chr4 42579813 42579867 -159748480 - MLT1E1 LTR MaLR -455 112 57 * 273 284 47 39 chr4 42579837 42579905 -159748442 - MLT1G1 LTR MaLR -467 128 57 2639 137 74 29 chr4 42579905 42580281 -159748066 + MLT1C LTR MaLR 1 402 -65 1809 162 38 0 chr4 42580281 42580571 -159747776 - AluSx SINE Alu -11 301 1 2639 137 74 29 chr4 42580571 42580641 -159747706 + MLT1C LTR MaLR 402 467 0 273 284 47 39 chr4 42580641 42580699 -159747648 - MLT1G1 LTR MaLR -538 57 1 1762 166 0 7 chr4 42580814 42581103 -159747244 + AluJo SINE Alu 1 287 -25 1957 125 0 11 chr4 42581806 42582086 -159746261 - AluJb SINE Alu -27 285 9 2237 111 0 0 chr4 42582181 42582479 -159745868 + AluY SINE Alu 1 298 -13 380 40 100 0 chr4 42582479 42582579 -159745768 + (TA)n Simple_repeat Simple_repeat 1 110 0 278 222 0 0 chr4 42582892 42582946 -159745401 - L2 LINE L2 -13 3259 3206 21 57 0 0 chr4 42583491 42583526 -159744821 + AT_rich Low_complexity Low_complexity 1 35 0 1837 164 10 10 chr4 42583718 42584022 -159744325 + AluJb SINE Alu 1 304 -8 2111 76 29 4 chr4 42584794 42585118 -159743229 + AluSq SINE Alu 1 331 0 2017 110 3 30 chr4 42586356 42586657 -159741690 + AluSx SINE Alu 1 293 -19 549 302 36 5 chr4 42587021 42587241 -159741106 + MIR SINE MIR 23 248 -14 315 258 32 54 chr4 42587558 42587651 -159740696 - MIR SINE MIR -114 148 58 2024 102 10 10 chr4 42588050 42588344 -159740003 - AluSg SINE Alu 0 310 17 294 177 0 32 chr4 42588653 42588715 -159739632 - MLT1E1 LTR MaLR -581 73 14 2140 135 13 0 chr4 42588752 42589056 -159739291 + AluSg SINE Alu 1 308 -2 2230 102 3 7 chr4 42589459 42589754 -159738593 + AluSq SINE Alu 4 297 -16 962 202 0 6 chr4 42590053 42590236 -159738111 + FRAM SINE Alu 1 176 0 905 281 88 48 chr4 42590257 42590330 -159738017 + L1M4 LINE L1 3705 3774 -2372 354 45 0 0 chr4 42590330 42590374 -159737973 + (CA)n Simple_repeat Simple_repeat 2 45 0 905 281 88 48 chr4 42590374 42591133 -159737214 + L1M4 LINE L1 3774 4570 -1576 404 306 102 46 chr4 42591279 42591739 -159736608 + L1MA4A LINE L1 4912 5397 -749 2326 107 10 0 chr4 42591878 42592186 -159736161 + AluSx SINE Alu 1 311 -1 2355 85 3 0 chr4 42592340 42592633 -159735714 + AluSp SINE Alu 1 294 -19 613 253 141 24 chr4 42594045 42594225 -159734122 - LTR33 LTR ERVL -4 517 359 189 0 0 0 chr4 42594225 42594246 -159734101 + (CAGAGA)n Simple_repeat Simple_repeat 2 22 0 613 253 141 24 chr4 42594246 42594261 -159734086 - LTR33 LTR ERVL -162 359 347 282 29 0 0 chr4 42594261 42594296 -159734051 + (CA)n Simple_repeat Simple_repeat 2 36 0 613 253 141 24 chr4 42594296 42594348 -159733999 - LTR33 LTR ERVL -174 347 240 3188 138 113 63 chr4 42594395 42594540 -159733807 + L1MA4A LINE L1 5520 5656 -647 2001 147 0 16 chr4 42594540 42594853 -159733494 + AluJb SINE Alu 5 312 0 3188 138 113 63 chr4 42594853 42595432 -159732915 + L1MA4A LINE L1 5656 6280 -23 603 262 33 11 chr4 42595433 42595616 -159732731 - LTR33 LTR ERVL -331 190 4 185 333 40 13 chr4 42595874 42595949 -159732398 - L2 LINE L2 -1 3312 3236 189 239 65 0 chr4 42596081 42596127 -159732220 + L2 LINE L2 3265 3313 0 1097 107 0 0 chr4 42596408 42596557 -159731790 + L1P5 LINE L1 5520 5668 -488 411 109 0 0 chr4 42596561 42596616 -159731731 + Alu SINE Alu 5 59 -250 2308 100 3 0 chr4 42597329 42597628 -159730719 + AluSc SINE Alu 1 300 -9 1086 252 55 77 chr4 42597929 42598490 -159729857 + MER39 LTR ERV1 1 707 0 189 282 0 0 chr4 42598961 42599000 -159729347 - L2 LINE L2 -95 3218 3180 595 303 0 56 chr4 42599201 42599399 -159728948 + L2 LINE L2 3081 3267 -5 899 170 7 7 chr4 42599406 42599559 -159728788 + FRAM SINE Alu 1 153 -23 236 288 220 0 chr4 42599571 42599689 -159728658 - MIR SINE MIR -13 249 106 5245 154 42 22 chr4 42601613 42602071 -159726276 + L1MA5 LINE L1 5325 5772 -528 2299 117 66 26 chr4 42602071 42602421 -159725926 - THE1B LTR MaLR 0 364 1 5245 154 42 22 chr4 42602421 42602914 -159725433 + L1MA5 LINE L1 5772 6295 -5 777 269 43 5 chr4 42602926 42603134 -159725213 - MLT1L LTR MaLR -23 592 377 2377 88 0 0 chr4 42603183 42603478 -159724869 - AluSg SINE Alu -15 295 1 584 194 0 0 chr4 42603516 42603609 -159724738 - FLAM_A SINE Alu -45 97 5 504 282 112 50 chr4 42603633 42603874 -159724473 - MLT1L LTR MaLR -335 280 25 2234 98 0 3 chr4 42603928 42604223 -159724124 - AluSg SINE Alu -16 294 1 2878 96 3 3 chr4 42604807 42605170 -159723177 - THE1B LTR MaLR -1 363 1 393 200 9 36 chr4 42605172 42605282 -159723065 + LTR67 LTR ERVL 428 534 -23 628 234 35 35 chr4 42605308 42605479 -159722868 - MIR3 SINE MIR -3 205 35 1060 229 12 33 chr4 42606019 42606264 -159722083 - MIR SINE MIR -21 241 2 523 207 0 0 chr4 42606308 42606390 -159721957 - AluS SINE Alu -231 82 1 21 0 0 0 chr4 42606734 42606755 -159721592 + AT_rich Low_complexity Low_complexity 1 21 0 2145 111 4 0 chr4 42607083 42607393 -159720954 + AluSx SINE Alu 1 311 0 2746 129 65 0 chr4 42607638 42608040 -159720307 - MSTA LTR MaLR 0 428 1 1593 217 20 14 chr4 42608065 42608415 -159719932 - LTR10D LTR ERV1 0 513 162 251 308 88 11 chr4 42608855 42608946 -159719401 + L2 LINE L2 3174 3271 -1 * 274 180 0 101 chr4 42608945 42609034 -159719313 - L2 LINE L2 -173 3099 3020 1853 134 40 3 chr4 42609790 42610089 -159718258 - AluSg SINE Alu 0 310 1 189 350 152 41 chr4 42610396 42610981 -159717366 - L2 LINE L2 -465 2849 2200 971 172 6 18 chr4 42611290 42611453 -159716894 - FRAM SINE Alu -5 161 1 252 0 0 0 chr4 42612972 42613000 -159715347 + (TG)n Simple_repeat Simple_repeat 2 29 0 257 227 55 45 chr4 42613039 42613149 -159715198 - L1MC/D LINE L1 -1921 5887 5777 725 289 179 7 chr4 42613479 42613780 -159714567 - L2 LINE L2 0 3313 2961 707 274 14 28 chr4 42614255 42614470 -159713877 + MIR SINE MIR 40 251 -11 194 91 30 0 chr4 42614471 42614504 -159713843 + (CACCAT)n Simple_repeat Simple_repeat 3 36 0 734 266 51 74 chr4 42615074 42615330 -159713017 + MIR SINE MIR 12 261 -1 404 52 39 26 chr4 42616054 42616068 -159712279 + (GAAA)n Simple_repeat Simple_repeat 3 15 -65 2106 119 13 7 chr4 42616068 42616378 -159711969 + AluSx SINE Alu 1 312 0 404 52 39 26 chr4 42616378 42616440 -159711907 + (GAAA)n Simple_repeat Simple_repeat 15 80 0 234 0 0 0 chr4 42616912 42616938 -159711409 + (CA)n Simple_repeat Simple_repeat 2 27 0 2111 115 3 13 chr4 42618158 42618470 -159709877 - AluSx SINE Alu -3 309 1 2043 86 2 176 chr4 42619528 42619936 -159708411 - MER1B DNA MER1_type 0 337 1 270 139 0 0 chr4 42620012 42620055 -159708292 + L2 LINE L2 3271 3313 0 2472 66 0 10 chr4 42620059 42620363 -159707984 + AluSc SINE Alu 1 301 -8 2235 87 7 7 chr4 42621217 42621506 -159706841 - AluSc SINE Alu -9 300 12 2576 125 28 14 chr4 42622196 42622555 -159705792 + THE1B LTR MaLR 1 364 0 506 262 44 38 chr4 42623582 42623765 -159704582 - MIR SINE MIR -20 242 59 609 172 48 86 chr4 42623843 42624029 -159704318 - MER96B DNA MER1_type? -238 179 1 213 184 0 0 chr4 42624194 42624232 -159704115 + L2 LINE L2 3217 3254 -18 2148 135 0 6 chr4 42624239 42624551 -159703796 + AluSx SINE Alu 1 310 -2 543 248 163 0 chr4 42625302 42625455 -159702892 + MER5A DNA MER1_type 12 189 0 310 172 0 62 chr4 42625669 42625733 -159702614 + MIR SINE MIR 91 150 -58 2276 91 0 7 chr4 42626394 42626692 -159701655 + AluSx SINE Alu 1 296 -16 1656 178 107 67 chr4 42626803 42627252 -159701095 + MLT1C LTR MaLR 1 467 0 244 301 12 12 chr4 42627410 42627493 -159700854 - MARNA DNA Mariner -27 559 477 2336 92 3 0 chr4 42627582 42627888 -159700459 + AluSg SINE Alu 2 308 -2 204 43 43 43 chr4 42628024 42628037 -159700310 + (CAAA)n Simple_repeat Simple_repeat 2 14 -34 2492 70 0 6 chr4 42628037 42628350 -159699997 + AluY SINE Alu 1 311 0 204 43 43 43 chr4 42628350 42628383 -159699964 + (CAAA)n Simple_repeat Simple_repeat 13 48 0 387 242 142 74 chr4 42629081 42629215 -159699132 - MIR SINE MIR -19 243 91 2241 98 7 10 chr4 42629215 42629520 -159698827 + AluSq SINE Alu 1 304 -9 387 242 142 74 chr4 42629520 42629575 -159698772 - MIR SINE MIR -171 91 41 295 307 31 24 chr4 42629682 42629809 -159698538 + L1ME LINE L1 5629 5756 -365 249 108 0 0 chr4 42629998 42630035 -159698312 + (TCCA)n Simple_repeat Simple_repeat 1 37 0 2425 82 0 0 chr4 42631279 42631573 -159696774 + AluSc SINE Alu 1 294 -15 1875 179 0 0 chr4 42631634 42631946 -159696401 + AluJo SINE Alu 1 312 0 249 278 0 0 chr4 42632400 42632454 -159695893 + L2 LINE L2 3230 3283 -30 1062 96 0 84 chr4 42632530 42632697 -159695650 - AluSg/x SINE Alu -84 226 74 209 211 0 0 chr4 42634124 42634162 -159694185 + GA-rich Low_complexity Low_complexity 2 39 0 269 275 44 33 chr4 42634500 42634591 -159693756 - MIR SINE MIR -95 113 22 2214 110 7 13 chr4 42634626 42634934 -159693413 - AluSx SINE Alu -6 306 1 304 313 30 38 chr4 42635757 42635888 -159692459 + L2 LINE L2 3137 3266 -6 25 31 0 0 chr4 42635905 42635937 -159692410 + AT_rich Low_complexity Low_complexity 1 32 0 22 56 0 0 chr4 42635950 42635986 -159692361 + AT_rich Low_complexity Low_complexity 1 36 0 2307 82 0 0 chr4 42636451 42636757 -159691590 + AluSg SINE Alu 3 308 0 383 265 134 26 chr4 42636758 42636846 -159691501 - L2 LINE L2 -146 3167 3090 1953 190 3 11 chr4 42636846 42637214 -159691133 + MLT1A1 LTR MaLR 1 365 0 383 265 134 26 chr4 42637214 42637431 -159690916 - L2 LINE L2 -223 3090 2829 202 303 0 64 chr4 42637546 42637655 -159690692 - L2 LINE L2 -226 3046 2945 222 149 0 21 chr4 42637659 42637675 -159690672 + (GA)n Simple_repeat Simple_repeat 2 17 -30 2138 128 0 3 chr4 42637675 42637973 -159690374 + AluSx SINE Alu 1 297 -15 222 149 0 21 chr4 42637973 42638003 -159690344 + (GA)n Simple_repeat Simple_repeat 17 47 0 330 285 27 37 chr4 42638155 42638370 -159689977 + MIR3 SINE MIR 3 212 -50 504 278 21 31 chr4 42640159 42640350 -159687997 - MIR SINE MIR -4 258 70 2477 68 3 0 chr4 42640910 42641206 -159687141 + AluSc SINE Alu 1 297 -12 219 300 0 0 chr4 42641281 42641331 -159687016 - L2 LINE L2 -17 3255 3206 398 246 189 0 chr4 42641777 42641952 -159686395 + MIR SINE MIR 48 255 -7 666 289 71 0 chr4 42641963 42642174 -159686173 + MIR SINE MIR 7 232 -30 2237 92 0 0 chr4 42642191 42642504 -159685843 + AluSc SINE Alu 1 313 0 1695 150 57 21 chr4 42642869 42643149 -159685198 + AluJo SINE Alu 1 290 -22 218 288 0 45 chr4 42644022 42644088 -159684259 - L2 LINE L2 -10 3303 3241 2115 105 11 0 chr4 42644202 42644487 -159683860 - AluSx SINE Alu -7 305 18 1884 114 43 11 chr4 42644589 42644870 -159683477 + AluSx SINE Alu 15 304 -8 2224 103 7 3 chr4 42645583 42645883 -159682464 + AluSg SINE Alu 1 301 -9 2394 96 3 3 chr4 42646104 42646453 -159681894 + AluSx SINE Alu 1 349 0 669 251 46 0 chr4 42646569 42646764 -159681583 + L2 LINE L2 2418 2621 -693 845 243 52 24 chr4 42646866 42647195 -159681152 + LTR16B LTR ERVL 114 451 -13 927 271 41 30 chr4 42647199 42647748 -159680599 + L2 LINE L2 2614 3156 -157 246 172 54 86 chr4 42647899 42647992 -159680355 + MLT1I LTR MaLR 319 408 -1 2247 114 0 19 chr4 42647999 42648314 -159680033 - AluSx SINE Alu -3 309 1 257 247 14 0 chr4 42648837 42648910 -159679437 + L1MC4a LINE L1 5393 5466 -2342 765 204 105 0 chr4 42648926 42649117 -159679230 - MIR SINE MIR -1 261 51 271 203 43 0 chr4 42649126 42649195 -159679152 + L1MC4a LINE L1 5845 5916 -1892 267 270 20 20 chr4 42649209 42649309 -159679038 + (TATATG)n Simple_repeat Simple_repeat 2 101 0 22 0 0 0 chr4 42650338 42650360 -159677987 + AT_rich Low_complexity Low_complexity 1 22 0 23 68 0 0 chr4 42650490 42650534 -159677813 + AT_rich Low_complexity Low_complexity 1 44 0 200 316 38 0 chr4 42651261 42651340 -159677007 + L2 LINE L2 3178 3259 -13 243 61 0 0 chr4 42651357 42651390 -159676957 + (TGAA)n Simple_repeat Simple_repeat 3 35 0 2196 115 0 0 chr4 42651446 42651741 -159676606 + AluSq SINE Alu 17 311 -2 2215 112 0 13 chr4 42652845 42653150 -159675197 - AluSx SINE Alu -11 301 1 344 214 0 56 chr4 42653202 42653291 -159675056 + MIR SINE MIR 49 132 -130 216 293 95 43 chr4 42655760 42655958 -159672389 + MIR SINE MIR 34 246 -16 * 971 265 4 19 chr4 42655930 42656187 -159672160 - MIR SINE MIR -4 258 6 2020 109 3 42 chr4 42656674 42656986 -159671361 + AluSx SINE Alu 1 300 -12 3997 158 7 40 chr4 42657309 42658057 -159670290 - L1MB3 LINE L1 0 6183 5461 612 129 2 0 chr4 42658084 42658184 -159670163 - L1P2 LINE L1 -674 5480 5379 22 35 0 0 chr4 42658186 42658215 -159670132 + AT_rich Low_complexity Low_complexity 1 29 0 712 282 97 63 chr4 42658772 42659152 -159669195 + LTR16A LTR ERVL 52 444 -6 260 188 0 0 chr4 42659160 42659208 -159669139 - L1MC/D LINE L1 -1977 5831 5784 411 127 64 13 chr4 42659209 42659366 -159668981 + (TA)n Simple_repeat Simple_repeat 2 166 0 1765 140 4 29 chr4 42660291 42660569 -159667778 - AluSx SINE Alu -1 311 41 197 264 52 132 chr4 42660978 42661152 -159667195 - MIR3 SINE MIR -25 183 24 1853 153 72 3 chr4 42662301 42662622 -159665725 + MER7A DNA MER2_type 6 346 0 1515 236 58 28 chr4 42662629 42663061 -159665286 + MLT1E1 LTR MaLR 20 464 -190 713 187 59 53 chr4 42663300 42663487 -159664860 + MLT1E1 LTR MaLR 467 654 0 2323 117 0 0 chr4 42664077 42664385 -159663962 - AluSx SINE Alu -4 308 1 29 0 0 0 chr4 42665810 42665839 -159662508 + AT_rich Low_complexity Low_complexity 1 29 0 434 253 141 30 chr4 42666113 42666311 -159662036 + MIR SINE MIR 1 220 -42 398 238 0 0 chr4 42667432 42667516 -159660831 + L2 LINE L2 3227 3310 -3 204 40 0 0 chr4 42667703 42667728 -159660619 + (GGAA)n Simple_repeat Simple_repeat 2 26 0 2260 97 10 0 chr4 42667843 42668142 -159660205 - AluY SINE Alu -9 302 1 419 309 141 49 chr4 42668151 42668520 -159659827 + MLT1J LTR MaLR 109 511 0 395 270 72 99 chr4 42668532 42668795 -159659552 + MIR SINE MIR 2 257 -5 1740 175 24 17 chr4 42669728 42670025 -159658322 - AluJo SINE Alu -13 299 1 2282 103 0 0 chr4 42671321 42671621 -159656726 - AluSx SINE Alu -12 300 1 2389 84 3 0 chr4 42671949 42672247 -159656100 + AluSx SINE Alu 1 299 -13 297 255 47 38 chr4 42672308 42672414 -159655933 + L2 LINE L2 1862 1968 -1346 1719 158 0 4 chr4 42672852 42673117 -159655230 + AluJo SINE Alu 10 273 -39 2077 143 3 0 chr4 42673145 42673453 -159654894 + AluSx SINE Alu 1 309 -3 245 302 148 16 chr4 42673940 42674129 -159654218 + L2 LINE L2 2129 2342 -972 815 145 15 0 chr4 42674132 42674263 -159654084 + FLAM_C SINE Alu 1 133 -10 508 309 16 16 chr4 42674331 42674519 -159653828 + MER5A DNA MER1_type 2 189 0 202 250 62 0 chr4 42674520 42674584 -159653763 + L2 LINE L2 2398 2465 -849 200 372 0 81 chr4 42675096 42675244 -159653103 + L2 LINE L2 3040 3175 -97 180 133 44 44 chr4 42675278 42675323 -159653024 - MIR3 SINE MIR -19 189 145 209 286 57 0 chr4 42675329 42675399 -159652948 + L3 LINE CR1 1470 1543 -34 2419 79 3 0 chr4 42675780 42676072 -159652275 - AluSp SINE Alu -20 293 1 2938 10 0 0 chr4 42676078 42676389 -159651958 - AluYb8 SINE Alu -7 311 1 264 365 10 0 chr4 42676708 42676804 -159651543 + L3b LINE CR1 1402 1498 -85 2198 83 6 61 chr4 42677203 42677516 -159650831 - AluSx SINE Alu -16 296 1 211 303 26 13 chr4 42677758 42677834 -159650513 + MIR SINE MIR 21 97 -165 497 221 71 9 chr4 42678128 42678241 -159650106 + MER5B DNA MER1_type 7 126 -52 792 59 0 0 chr4 42678241 42678343 -159650004 + (CTATT)n Simple_repeat Simple_repeat 4 105 0 1218 159 20 10 chr4 42678345 42678546 -159649801 - AluJb SINE Alu -23 289 87 210 279 0 16 chr4 42678546 42678607 -159649740 + MER5B DNA MER1_type 119 178 0 290 292 80 29 chr4 42678706 42678843 -159649504 - L3 LINE CR1 -44 1533 1390 189 333 54 36 chr4 42678951 42679062 -159649285 - MIR SINE MIR -64 144 32 271 328 87 11 chr4 42679603 42679786 -159648561 + MIR SINE MIR 66 262 0 2511 64 3 0 chr4 42680439 42680736 -159647611 - AluSp SINE Alu -15 298 1 3524 113 25 25 chr4 42680777 42681301 -159647046 + MER1A DNA MER1_type 4 527 0 2173 196 33 25 chr4 42681309 42681793 -159646554 + MLT1D LTR MaLR 16 503 -2 2224 122 6 3 chr4 42681948 42682259 -159646088 + AluSx SINE Alu 1 312 0 267 229 0 0 chr4 42682522 42682570 -159645777 + MER3 DNA MER1_type 1 48 -161 6932 194 17 9 chr4 42682570 42684053 -159644294 + L1P4 LINE L1 3961 5455 -710 353 245 368 0 chr4 42684121 42684284 -159644063 - MIR SINE MIR -3 259 37 292 315 27 45 chr4 42684906 42685017 -159643330 + L2 LINE L2 3197 3305 -8 858 205 17 60 chr4 42685478 42685712 -159642635 + MER58A DNA MER1_type 1 224 0 42 71 0 0 chr4 42686913 42686997 -159641350 + AT_rich Low_complexity Low_complexity 1 84 0 2014 150 23 7 chr4 42687035 42687342 -159641005 + AluSx SINE Alu 1 312 0 763 149 66 0 chr4 42690902 42691023 -159637324 - FLAM_A SINE Alu -3 130 2 194 0 39 0 chr4 42691197 42691223 -159637124 + (TAA)n Simple_repeat Simple_repeat 1 27 0 2523 7 0 0 chr4 42691351 42691625 -159636722 - AluY SINE Alu 0 311 38 30 27 0 0 chr4 42691846 42691883 -159636464 + AT_rich Low_complexity Low_complexity 1 37 0 184 280 140 10 chr4 42692488 42692588 -159635759 - L2 LINE L2 -49 3264 3152 2039 95 0 101 chr4 42692907 42693049 -159635298 + AluY SINE Alu 1 91 -220 2017 139 36 0 chr4 42693049 42693350 -159634997 + AluSx SINE Alu 1 312 0 2039 95 0 101 chr4 42693350 42693543 -159634804 + AluY SINE Alu 91 302 -9 2116 148 0 0 chr4 42694145 42694450 -159633897 - AluSx SINE Alu -7 305 1 573 129 0 32 chr4 42694738 42694831 -159633516 - FLAM_A SINE Alu -20 122 33 613 244 22 62 chr4 42694891 42695116 -159633231 + L2 LINE L2 3097 3312 -1 2203 110 10 0 chr4 42695728 42696029 -159632318 - AluSx SINE Alu -8 304 1 1412 211 73 76 chr4 42696216 42696268 -159632079 - L1ME2 LINE L1 -1 6161 6110 2649 90 21 3 chr4 42696268 42696647 -159631700 - L1PA13 LINE L1 -11 6152 5767 1412 211 73 76 chr4 42696647 42696761 -159631586 - L1ME2 LINE L1 -52 6110 5997 1987 127 3 0 chr4 42696761 42697072 -159631275 + AluSx SINE Alu 1 312 0 1412 211 73 76 chr4 42697072 42697213 -159631134 - L1ME2 LINE L1 -165 5997 5857 2080 118 3 37 chr4 42697213 42697535 -159630812 - AluSx SINE Alu -1 311 1 1412 211 73 76 chr4 42697535 42697782 -159630565 - L1ME2 LINE L1 -305 5857 5615 1212 215 120 9 chr4 42697782 42698107 -159630240 - MLT1A1 LTR MaLR 0 365 5 1412 211 73 76 chr4 42698107 42698188 -159630159 - L1ME2 LINE L1 -547 5615 5535 851 297 53 18 chr4 42698807 42699201 -159629146 + L1ME2 LINE L1 502 909 -5296 3759 155 33 102 chr4 42699252 42699673 -159628674 + L1MA6 LINE L1 4941 5390 -910 1754 175 33 7 chr4 42699673 42699976 -159628371 - AluJo SINE Alu -1 311 1 3759 155 33 102 chr4 42699976 42700249 -159628098 + L1MA6 LINE L1 5390 5680 -620 2286 99 7 0 chr4 42700249 42700543 -159627804 + AluSc SINE Alu 1 296 -13 3759 155 33 102 chr4 42700543 42700566 -159627781 + L1MA6 LINE L1 5680 5703 -597 735 172 0 16 chr4 42700566 42700688 -159627659 + FLAM_A SINE Alu 5 124 -9 3759 155 33 102 chr4 42700688 42701418 -159626929 + L1MA6 LINE L1 5703 6292 -8 666 231 168 25 chr4 42701692 42702008 -159626339 + L1ME2 LINE L1 983 1343 -4862 2518 85 0 0 chr4 42702048 42702354 -159625993 - AluSx SINE Alu -6 306 1 261 281 12 0 chr4 42702432 42702514 -159625833 + HAL1 LINE L1 1506 1588 -919 917 264 133 42 chr4 42702890 42703614 -159624733 + L1ME2 LINE L1 2037 2694 -3521 2388 85 0 16 chr4 42703614 42703930 -159624417 + AluY SINE Alu 1 311 0 2414 104 28 3 chr4 42703939 42704294 -159624053 + THE1B LTR MaLR 1 364 0 917 264 133 42 chr4 42704294 42704693 -159623654 + L1ME2 LINE L1 2701 3062 -3153 2120 129 7 3 chr4 42704693 42705002 -159623345 - AluSg SINE Alu 0 310 1 917 264 133 42 chr4 42705002 42705063 -159623284 + L1ME2 LINE L1 3062 3116 -3099 1879 130 84 35 chr4 42705063 42705410 -159622937 - THE1B LTR MaLR 0 364 1 1802 212 75 37 chr4 42705411 42705892 -159622455 - MLT1D LTR MaLR -4 501 3 917 264 133 42 chr4 42705892 42706030 -159622317 + L1ME2 LINE L1 3115 3451 -2764 22 70 0 0 chr4 42706259 42706302 -159622045 + AT_rich Low_complexity Low_complexity 1 43 0 2191 121 3 0 chr4 42706320 42706618 -159621729 - AluSx SINE Alu -13 299 1 983 203 14 9 chr4 42706975 42707192 -159621155 + MER58B DNA MER1_type 120 337 -4 2074 82 7 11 chr4 42707395 42707705 -159620642 + AluSc SINE Alu 1 309 0 1852 165 0 28 chr4 42707740 42708061 -159620286 - AluJb SINE Alu 0 312 1 2209 109 6 3 chr4 42708108 42708419 -159619928 - AluSx SINE Alu 0 312 1 1143 60 0 0 chr4 42708420 42708554 -159619793 - AluSq/x SINE Alu -179 134 1 9884 188 37 10 chr4 42708908 42709278 -159619069 - L1PA16 LINE L1 -20 6146 5787 2214 121 0 0 chr4 42709278 42709576 -159618771 - AluSg1 SINE Alu -3 306 9 9884 188 37 10 chr4 42709576 42712450 -159615897 - L1PA16 LINE L1 -379 5787 2821 1865 285 82 32 chr4 42712450 42713321 -159615026 + L1ME2 LINE L1 3696 4522 -1693 1974 119 16 39 chr4 42713321 42713684 -159614663 + AluSc SINE Alu 1 309 0 1865 285 82 32 chr4 42713684 42714116 -159614231 + L1ME2 LINE L1 4522 5090 -1125 1712 170 11 0 chr4 42714116 42714291 -159614056 - AluJb SINE Alu 0 309 128 249 33 0 0 chr4 42714291 42714321 -159614026 + (TTA)n Simple_repeat Simple_repeat 2 31 0 1712 170 11 0 chr4 42714321 42714449 -159613898 - AluJb SINE Alu -181 128 3 1865 285 82 32 chr4 42714449 42714667 -159613680 + L1ME2 LINE L1 5090 5296 -919 427 303 165 42 chr4 42714793 42715199 -159613148 + L2 LINE L2 2804 3259 -54 214 304 54 11 chr4 42716129 42716221 -159612126 - MER5A DNA MER1_type -26 163 68 881 113 0 15 chr4 42716382 42716515 -159611832 + AluY SINE Alu 1 131 -180 1496 96 5 10 chr4 42716674 42716882 -159611465 - AluSx SINE Alu -18 292 86 1134 210 56 0 chr4 42717057 42717362 -159610985 - MER33 DNA MER1_type 0 324 3 731 152 8 0 chr4 42718089 42718214 -159610133 - AluSg/x SINE Alu -4 305 180 1086 209 35 26 chr4 42718427 42719046 -159609301 + L1ME2 LINE L1 5395 6116 -117 535 146 0 0 chr4 42719057 42719139 -159609208 - AluSx SINE Alu -227 85 4 305 147 15 0 chr4 42719141 42719209 -159609138 + L1MA10 LINE L1 6264 6332 -2 209 338 39 0 chr4 42719289 42719366 -159608981 + MIR3 SINE MIR 4 83 -125 26 0 0 27 chr4 42719629 42719648 -159608699 + AT_rich Low_complexity Low_complexity 1 20 -16 704 162 0 63 chr4 42719648 42719790 -159608557 + AluJo SINE Alu 1 133 -169 26 0 0 27 chr4 42719790 42719807 -159608540 + AT_rich Low_complexity Low_complexity 20 36 0 207 0 0 0 chr4 42719818 42719841 -159608506 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1504 107 0 0 chr4 42719863 42720059 -159608288 + AluSg1 SINE Alu 1 196 -113 225 0 0 0 chr4 42720086 42720111 -159608236 + (A)n Simple_repeat Simple_repeat 1 25 0 222 171 0 0 chr4 42720129 42720170 -159608177 + A-rich Low_complexity Low_complexity 1 41 0 968 187 24 0 chr4 42720176 42720342 -159608005 + AluJo SINE Alu 120 289 -23 1750 150 13 19 chr4 42720420 42720734 -159607613 - AluJo SINE Alu 0 312 1 28131 35 5 3 chr4 42720983 42725402 -159602945 + L1PA4 LINE L1 1730 6151 -4 30 0 0 0 chr4 42725402 42725432 -159602915 + AT_rich Low_complexity Low_complexity 1 30 0 2285 122 3 0 chr4 42726053 42726365 -159601982 + AluSq SINE Alu 1 313 0 2348 97 0 0 chr4 42726994 42727294 -159601053 + AluY SINE Alu 1 300 -11 706 148 19 143 chr4 42728290 42728500 -159599847 + FAM SINE Alu 1 49 0 936 177 13 6 chr4 42728612 42728770 -159599577 - AluJb SINE Alu -18 294 136 2308 108 0 3 chr4 42728772 42729079 -159599268 - AluSx SINE Alu -6 306 1 437 293 30 15 chr4 42729888 42730021 -159598326 - MLT1K LTR MaLR -91 497 363 181 196 0 78 chr4 42730025 42730076 -159598271 + L3 LINE CR1 314 360 -1217 325 173 123 49 chr4 42730313 42730394 -159597953 + MIR SINE MIR 65 151 -111 1010 247 43 79 chr4 42732118 42732314 -159596033 - LTR16B LTR ERVL -8 456 254 230 0 33 0 chr4 42732314 42732344 -159596003 + (TTTG)n Simple_repeat Simple_repeat 1 31 0 1932 103 33 0 chr4 42732346 42732617 -159595730 - AluSq SINE Alu -33 280 1 1010 247 43 79 chr4 42732617 42732886 -159595461 - LTR16B LTR ERVL -211 253 5 2368 98 7 0 chr4 42733007 42733313 -159595034 - AluSg SINE Alu -2 308 1 435 269 28 46 chr4 42733464 42733592 -159594755 - L1MC4 LINE L1 -1040 7002 6878 868 203 39 0 chr4 42733592 42733774 -159594573 - MER5A DNA MER1_type 0 189 1 435 269 28 46 chr4 42733774 42733861 -159594486 - L1MC4 LINE L1 -1164 6878 6791 2271 99 0 3 chr4 42734953 42735255 -159593092 + AluSg SINE Alu 8 308 -2 2051 263 132 6 chr4 42736062 42736766 -159591581 + L2 LINE L2 2153 2945 -369 263 343 50 30 chr4 42736758 42736857 -159591490 - L2 LINE L2 -4 3268 3168 * 733 244 83 65 chr4 42736887 42737007 -159591340 - MIR SINE MIR -21 241 125 2149 123 16 7 chr4 42737007 42737316 -159591031 + AluSx SINE Alu 1 312 0 733 244 83 65 chr4 42737316 42737425 -159590922 - MIR SINE MIR -137 125 8 1863 159 3 17 chr4 42737702 42738003 -159590344 - AluJb SINE Alu -15 297 1 2395 58 0 10 chr4 42738138 42738431 -159589916 + AluY SINE Alu 1 290 -21 1845 162 3 7 chr4 42738445 42738579 -159589768 + AluJb SINE Alu 1 134 -178 2329 100 7 0 chr4 42738579 42738879 -159589468 + AluSx SINE Alu 1 302 -10 1845 162 3 7 chr4 42738879 42739041 -159589306 + AluJb SINE Alu 134 296 -16 186 353 0 0 chr4 42740050 42740101 -159588246 - L2 LINE L2 -17 3255 3205 1750 229 91 47 chr4 42740121 42740680 -159587667 - MLT1E LTR MaLR 0 593 10 573 284 62 46 chr4 42741000 42741306 -159587041 - MLT1J LTR MaLR -130 381 71 494 316 31 31 chr4 42741513 42741706 -159586641 - MER117 DNA MER1_type -3 194 2 854 248 81 22 chr4 42741800 42742174 -159586173 - L1MEd LINE L1 -4814 1315 935 1260 227 106 12 chr4 42742221 42742551 -159585796 + L1MC/D LINE L1 5328 5688 -2120 27 0 0 0 chr4 42742621 42742648 -159585699 + AT_rich Low_complexity Low_complexity 1 27 0 683 307 89 22 chr4 42742658 42742928 -159585419 - L1MEd LINE L1 -5348 771 484 936 126 86 7 chr4 42742971 42743122 -159585225 - FRAM SINE Alu 0 166 4 505 310 39 0 chr4 42743219 42743422 -159584925 - L1MEd LINE L1 -5903 216 6 25 31 0 0 chr4 42743864 42743896 -159584451 + AT_rich Low_complexity Low_complexity 1 32 0 2369 92 3 0 chr4 42743940 42744246 -159584101 - AluSp SINE Alu -6 307 1 272 286 41 35 chr4 42744258 42744429 -159583918 + MER104 DNA Tc2 6 177 -3 198 250 0 0 chr4 42745282 42745322 -159583025 + L2 LINE L2 3255 3294 -19 366 339 76 35 chr4 42745783 42746099 -159582248 + L1MD2 LINE L1 1 329 -6211 3636 237 144 11 chr4 42746648 42748165 -159580182 + L1MD2 LINE L1 917 2615 -3925 2341 94 13 0 chr4 42748165 42748464 -159579883 - AluSx SINE Alu -9 303 1 3636 237 144 11 chr4 42748464 42748584 -159579763 + L1MD2 LINE L1 2615 2718 -3822 1109 145 5 16 chr4 42748623 42748809 -159579538 - MER2 DNA MER2_type -161 184 1 4373 231 57 21 chr4 42748809 42749375 -159578972 + L1MD2 LINE L1 2958 3503 -3037 1648 97 5 0 chr4 42749375 42749591 -159578756 + AluSg/x SINE Alu 82 298 -12 4373 231 57 21 chr4 42749591 42750260 -159578087 + L1MD2 LINE L1 3503 4250 -2290 1716 167 31 10 chr4 42750260 42750554 -159577793 + AluJo SINE Alu 2 301 -11 4373 231 57 21 chr4 42750554 42750711 -159577636 + L1MD2 LINE L1 4250 4400 -2140 1033 160 151 10 chr4 42750716 42750922 -159577425 + AluSg SINE Alu 1 235 -75 1059 108 0 0 chr4 42750926 42751065 -159577282 + AluJb SINE Alu 157 295 -17 3096 279 68 67 chr4 42751065 42751747 -159576600 + L1MD2 LINE L1 4399 5084 -1456 525 55 0 0 chr4 42751747 42751820 -159576527 + (GA)n Simple_repeat Simple_repeat 2 74 0 3096 279 68 67 chr4 42751820 42752334 -159576013 + L1MD2 LINE L1 5084 5596 -944 754 154 0 0 chr4 42752335 42752452 -159575895 + AluSq/x SINE Alu 1 117 -195 470 218 18 0 chr4 42752468 42752578 -159575769 + L1MD2 LINE L1 5579 5690 -850 340 257 66 37 chr4 42752578 42752714 -159575633 - L1MEc LINE L1 -4466 1930 1791 5412 163 52 21 chr4 42752719 42753756 -159574591 + L1MD2 LINE L1 5677 6745 -8 2322 100 0 0 chr4 42754599 42754898 -159573449 - AluSx SINE Alu -13 299 1 231 180 0 0 chr4 42755140 42755190 -159573157 - Alu SINE Alu 0 302 253 * 1767 148 0 0 chr4 42755189 42755453 -159572894 + Tigger3(Golem) DNA MER2_type 2765 3028 -1 23 33 0 0 chr4 42755853 42755883 -159572464 + AT_rich Low_complexity Low_complexity 1 30 0 500 274 86 86 chr4 42756238 42756493 -159571854 + MIR SINE MIR 2 256 -6 22 99 0 0 chr4 42756783 42756854 -159571493 + AT_rich Low_complexity Low_complexity 1 71 0 2025 179 65 4 chr4 42758071 42758529 -159569818 - L1M4 LINE L1 -789 5357 4872 1395 133 61 14 chr4 42758561 42758989 -159569358 - L1MD1 LINE L1 -2 6240 5737 769 155 46 11 chr4 42758989 42759149 -159569198 + L1MB8 LINE L1 5998 6177 -1 2261 90 0 40 chr4 42759175 42759498 -159568849 - AluSg SINE Alu 0 310 1 1316 225 111 20 chr4 42759525 42760022 -159568325 - L1M4 LINE L1 -1286 4860 4319 21 36 0 0 chr4 42760044 42760072 -159568275 + AT_rich Low_complexity Low_complexity 1 28 0 2181 102 0 52 chr4 42760228 42760552 -159567795 - AluSg SINE Alu -3 307 1 418 133 0 24 chr4 42761652 42761735 -159566612 + (TTTCC)n Simple_repeat Simple_repeat 4 84 0 462 266 8 31 chr4 42762197 42762325 -159566022 + MIR SINE MIR 121 245 -17 1043 169 48 11 chr4 42762392 42762581 -159565766 + MIR SINE MIR 2 197 -65 547 131 25 16 chr4 42762601 42762723 -159565624 - MER33 DNA MER1_type -1 323 201 1104 92 20 0 chr4 42762723 42762876 -159565471 - L1P4 LINE L1 -574 5594 5439 740 125 86 7 chr4 42762876 42763028 -159565319 - MER33 DNA MER1_type -135 189 26 958 170 35 0 chr4 42763245 42763416 -159564931 - MER2 DNA MER2_type 0 345 169 2860 116 29 26 chr4 42763738 42764228 -159564119 - L1PB4 LINE L1 0 6156 5666 321 302 133 43 chr4 42764494 42764795 -159563552 + L2 LINE L2 2043 2370 -944 216 322 70 61 chr4 42764854 42765335 -159563012 + L2 LINE L2 2549 3096 -176 509 277 60 0 chr4 42765386 42765552 -159562795 + MIR SINE MIR 70 245 -17 285 331 153 37 chr4 42765546 42765709 -159562638 + L2 LINE L2 3091 3272 0 * 195 222 0 0 chr4 42765709 42765754 -159562593 + (TGGA)n Simple_repeat Simple_repeat 2 46 0 947 193 13 75 chr4 42765820 42765962 -159562385 - MER58A DNA MER1_type -2196 224 101 2209 98 0 16 chr4 42765962 42766269 -159562078 + AluY SINE Alu 1 302 -9 947 193 13 75 chr4 42766269 42766365 -159561982 - MER58A DNA MER1_type -2319 101 1 1673 142 0 15 chr4 42767274 42767534 -159560813 + AluSx SINE Alu 1 256 -56 883 110 0 0 chr4 42767537 42767655 -159560692 + AluSg/x SINE Alu 187 304 -8 712 200 14 0 chr4 42767935 42768075 -159560272 - MIR SINE MIR -7 255 114 654 274 112 19 chr4 42768231 42768446 -159559901 + MIR SINE MIR 2 236 -26 603 257 73 30 chr4 42768847 42769065 -159559282 + MIR SINE MIR 37 262 0 27 62 0 0 chr4 42769285 42769333 -159559014 + AT_rich Low_complexity Low_complexity 1 48 0 872 166 0 20 chr4 42769349 42769500 -159558847 - MER106B DNA MER1_type -910 149 2 1733 145 20 44 chr4 42770016 42770313 -159558034 - AluJo SINE Alu -22 290 1 662 242 50 6 chr4 42770336 42770497 -159557850 - HsTC2 DNA Tc2 -1012 886 719 5184 112 66 2 chr4 42770504 42771160 -159557187 + L1PB4 LINE L1 5126 5864 -292 237 33 0 0 chr4 42771160 42771190 -159557157 + (CA)n Simple_repeat Simple_repeat 2 31 0 5184 112 66 2 chr4 42771190 42771491 -159556856 + L1PB4 LINE L1 5864 6144 -12 410 309 48 19 chr4 42771518 42771725 -159556622 - HsTC2 DNA Tc2 -1171 727 515 1598 192 0 24 chr4 42772162 42772459 -159555888 + AluJo SINE Alu 3 292 -20 244 179 13 64 chr4 42773587 42773665 -159554682 - MIR SINE MIR -123 139 66 2240 92 0 3 chr4 42773855 42774159 -159554188 - AluSg SINE Alu 0 303 1 1080 77 7 0 chr4 42774424 42774567 -159553780 + L1PA10 LINE L1 6019 6162 -6 1984 138 3 16 chr4 42774783 42775087 -159553260 + AluJb SINE Alu 9 308 -4 33 25 0 0 chr4 42775101 42775141 -159553206 + AT_rich Low_complexity Low_complexity 1 40 0 2179 112 0 20 chr4 42775554 42775857 -159552490 + AluSg SINE Alu 1 297 -13 1547 129 4 4 chr4 42776170 42776395 -159551952 + AluSg/x SINE Alu 75 299 -13 2061 125 26 0 chr4 42776405 42776710 -159551637 + AluSq SINE Alu 1 313 0 1195 149 9 167 chr4 42776958 42777306 -159551041 - AluJo SINE Alu -9 293 1 265 203 39 12 chr4 42777314 42777423 -159550924 - L1MC/D LINE L1 -303 5818 5704 669 154 12 118 chr4 42777424 42777547 -159550800 + AluJo SINE Alu 1 103 -209 1966 144 7 7 chr4 42777547 42777852 -159550495 - AluSx SINE Alu -7 305 1 669 154 12 118 chr4 42777852 42777897 -159550450 + AluJo SINE Alu 103 151 -161 326 155 0 52 chr4 42777897 42777955 -159550392 + Alu SINE Alu 235 289 -13 37 39 0 0 chr4 42777962 42778013 -159550334 + AT_rich Low_complexity Low_complexity 1 51 0 425 284 84 55 chr4 42778097 42778407 -159549940 - L1MC/D LINE L1 -2199 5609 5291 904 173 130 0 chr4 42778440 42778625 -159549722 - MER3 DNA MER1_type 0 209 1 21 36 0 0 chr4 42778836 42778864 -159549483 + AT_rich Low_complexity Low_complexity 1 28 0 2133 95 19 35 chr4 42779810 42780125 -159548222 - AluSx SINE Alu -2 310 1 234 236 24 79 chr4 42780839 42781004 -159547343 + L1M LINE L1 5255 5410 -2398 830 164 0 0 chr4 42781108 42781242 -159547105 + AluJo SINE Alu 1 134 -178 19307 51 2 1 chr4 42781252 42783642 -159544705 + L1P LINE L1 1 2391 -3755 2308 104 0 3 chr4 42783760 42784059 -159544288 + AluSx SINE Alu 2 299 -13 1390 149 65 7 chr4 42784884 42785159 -159543188 - L1MB4 LINE L1 0 6180 5890 472 221 98 8 chr4 42786680 42786802 -159541545 - Charlie8 DNA MER1_type -2141 276 144 240 348 22 44 chr4 42787335 42787470 -159540877 + L2 LINE L2 3141 3272 0 576 298 34 10 chr4 42787874 42788082 -159540265 - L1MC5 LINE L1 -47 7914 7702 2229 222 27 35 chr4 42788089 42788421 -159539926 - L1ME3 LINE L1 -2 6160 5832 2289 85 10 0 chr4 42788421 42788714 -159539633 - AluSq SINE Alu -17 296 1 2229 222 27 35 chr4 42788714 42788930 -159539417 - L1ME3 LINE L1 -330 5832 5616 1570 216 69 44 chr4 42788930 42789104 -159539243 - L1MC/D LINE L1 -878 5268 5100 1864 122 0 0 chr4 42789104 42789358 -159538989 + AluSq SINE Alu 56 309 -4 1570 216 69 44 chr4 42789358 42789687 -159538660 - L1MC/D LINE L1 -1046 5100 4752 2412 156 71 4 chr4 42789705 42790155 -159538192 - L1MB7 LINE L1 -220 5964 5485 462 259 25 25 chr4 42790131 42790289 -159538058 - L1MC5 LINE L1 -302 7659 7502 * 183 80 0 0 chr4 42790306 42790331 -159538016 + (TC)n Simple_repeat Simple_repeat 2 26 0 549 222 151 16 chr4 42790376 42790561 -159537786 - L1MC5 LINE L1 -492 7469 7260 2260 118 0 10 chr4 42790590 42790903 -159537444 - AluSx SINE Alu -2 310 1 1031 191 206 65 chr4 42790914 42791239 -159537108 - MLT1A2 LTR MaLR 0 374 4 1617 105 56 49 chr4 42791288 42791554 -159536793 - AluSq SINE Alu -45 268 1 234 276 0 0 chr4 42791628 42791686 -159536661 - L1MC4 LINE L1 -787 7255 7198 433 41 0 0 chr4 42791687 42791736 -159536611 + MER30 DNA MER1_type 3 51 -179 250 292 11 22 chr4 42791786 42791875 -159536472 - MLT1K LTR MaLR -362 226 139 483 276 64 13 chr4 42792298 42792454 -159535893 - MIR3 SINE MIR -3 205 42 1667 144 59 0 chr4 42792533 42792803 -159535544 - AluJo SINE Alu -26 286 1 218 154 103 0 chr4 42793063 42793102 -159535245 + L2 LINE L2 3222 3264 -8 307 335 74 4 chr4 42793477 42793734 -159534613 + L2 LINE L2 1830 2104 -1210 2422 81 3 0 chr4 42793906 42794203 -159534144 + AluSp SINE Alu 1 298 -15 381 211 0 0 chr4 42794267 42794343 -159534004 - MER53 DNA DNA -113 76 1 613 276 133 0 chr4 42794352 42794548 -159533799 - MIR SINE MIR -39 223 2 2198 118 0 3 chr4 42795185 42795482 -159532865 - AluSx SINE Alu -16 296 1 202 333 42 0 chr4 42795486 42795558 -159532789 + L2 LINE L2 2226 2300 -1014 2425 93 0 0 chr4 42795755 42796056 -159532291 + AluSc SINE Alu 1 301 -8 1727 103 22 0 chr4 42796539 42796762 -159531585 + MER30 DNA MER1_type 1 228 -2 2285 109 3 0 chr4 42797066 42797370 -159530977 + AluSx SINE Alu 1 305 -7 420 266 18 9 chr4 42797557 42797670 -159530677 - MIR3 SINE MIR -13 195 82 589 215 21 14 chr4 42797961 42798105 -159530242 + MIR SINE MIR 108 252 -10 284 304 72 24 chr4 42798952 42799077 -159529270 - L2 LINE L2 -5 3267 3137 187 320 112 50 chr4 42799388 42799825 -159528522 - L2 LINE L2 -454 2860 2397 1115 171 180 13 chr4 42799828 42800067 -159528280 + AluSg1 SINE Alu 1 279 -30 251 235 25 49 chr4 42800451 42800532 -159527815 + L1MC4a LINE L1 5848 5926 -1882 2191 114 3 7 chr4 42800643 42800941 -159527406 - AluSx SINE Alu -15 297 1 2298 96 0 7 chr4 42801159 42801460 -159526887 - AluSx SINE Alu -13 299 1 944 163 6 12 chr4 42801674 42801840 -159526507 + AluJo SINE Alu 126 290 -22 1028 219 40 0 chr4 42802059 42802260 -159526087 + MER3 DNA MER1_type 1 209 0 2161 198 59 28 chr4 42803453 42803998 -159524349 - MER68 LTR ERV1 0 562 1 1723 191 60 0 chr4 42804167 42804486 -159523861 - MER58B DNA MER1_type 0 341 4 448 235 56 29 chr4 42804527 42804728 -159523619 + L1ME LINE L1 5490 5694 -427 2317 117 0 0 chr4 42805320 42805619 -159522728 + AluSx SINE Alu 1 299 -13 593 280 96 8 chr4 42805627 42805888 -159522459 - MLT1J LTR MaLR -2 509 226 994 182 88 0 chr4 42806717 42806909 -159521438 - MER3 DNA MER1_type 0 209 1 2035 135 7 0 chr4 42808033 42808329 -159520018 + AluSx SINE Alu 1 298 -14 520 240 39 13 chr4 42809339 42809493 -159518854 - MLT1J LTR MaLR -315 196 39 276 309 73 6 chr4 42809502 42809667 -159518680 + L2 LINE L2 2316 2491 -823 373 226 0 29 chr4 42809852 42809954 -159518393 - L1P5 LINE L1 -571 5585 5487 2179 116 7 3 chr4 42809961 42810263 -159518084 - AluSx SINE Alu -9 303 1 787 193 25 54 chr4 42810263 42810387 -159517960 - L1M4 LINE L1 -835 5311 5196 943 148 0 15 chr4 42810387 42810522 -159517825 - FLAM_C SINE Alu 0 133 1 787 193 25 54 chr4 42810522 42810636 -159517711 - L1M4 LINE L1 -950 5196 5080 1658 176 15 0 chr4 42810637 42810899 -159517448 + AluJb SINE Alu 1 266 -46 850 136 25 0 chr4 42810940 42811058 -159517289 + FLAM_A SINE Alu 5 125 -8 901 201 46 0 chr4 42811061 42811255 -159517092 - L1M4 LINE L1 -1063 5083 4881 584 178 109 25 chr4 42811256 42811458 -159516889 - L1M4 LINE L1 -831 5315 5097 237 132 0 0 chr4 42811459 42811497 -159516850 + (TA)n Simple_repeat Simple_repeat 2 39 0 249 33 0 0 chr4 42811497 42811527 -159516820 + (GA)n Simple_repeat Simple_repeat 2 31 0 1426 210 95 9 chr4 42811746 42812093 -159516254 - MLT1E1 LTR MaLR -277 377 1 2294 212 139 31 chr4 42812102 42812223 -159516124 - L1M4 LINE L1 -1559 4587 4480 2325 97 3 0 chr4 42812223 42812521 -159515826 - AluSq SINE Alu -14 299 1 2294 212 139 31 chr4 42812521 42813242 -159515105 - L1M4 LINE L1 -1666 4480 3654 327 280 40 0 chr4 42813231 42813381 -159514966 - L1MDa LINE L1 -4147 2416 2261 * 809 235 176 20 chr4 42813443 42814139 -159514208 - L1MDa LINE L1 -4482 2081 1178 1972 155 0 10 chr4 42814155 42814465 -159513882 - AluJo SINE Alu -5 307 1 198 0 0 0 chr4 42814469 42814491 -159513856 + (A)n Simple_repeat Simple_repeat 1 22 0 914 217 6 17 chr4 42814727 42814902 -159513445 + FAM SINE Alu 1 173 -2 785 113 19 0 chr4 42820103 42820209 -159508138 + AluSg/x SINE Alu 186 293 -17 2230 102 7 0 chr4 42820356 42820651 -159507696 + AluSx SINE Alu 1 297 -15 2027 102 11 21 chr4 42822439 42822768 -159505579 - AluSq SINE Alu 0 326 1 633 185 196 0 chr4 42823730 42823903 -159504444 - MLT1D LTR MaLR -186 319 113 471 113 0 38 chr4 42823925 42824005 -159504342 + MLT1D LTR MaLR 429 505 0 2144 117 13 3 chr4 42824214 42824523 -159503824 + AluSx SINE Alu 1 312 0 1909 156 7 3 chr4 42824544 42824846 -159503501 + AluSx SINE Alu 1 303 -9 298 359 0 0 chr4 42825259 42825365 -159502982 - MIR SINE MIR -69 139 34 8459 12 0 0 chr4 42826073 42827426 -159500921 - L1PA2 LINE L1 0 6155 4803 1041 9 0 0 chr4 42827426 42827533 -159500814 - U6 snRNA snRNA 0 107 1 417 311 107 4 chr4 42827545 42827770 -159500577 - L1ME4a LINE L1 -197 5924 5677 1871 156 23 0 chr4 42827854 42828155 -159500192 + AluJb SINE Alu 1 308 -4 820 79 0 0 chr4 42828658 42828759 -159499588 + AluY SINE Alu 1 101 -210 3493 94 0 6 chr4 42828771 42829238 -159499109 + MER9 LTR ERVK 40 503 -8 1524 116 9 0 chr4 42829238 42829462 -159498885 + AluY SINE Alu 86 311 0 1081 126 0 0 chr4 42829586 42829768 -159498579 + AluSg/x SINE Alu 133 314 0 4948 123 41 39 chr4 42830252 42830633 -159497714 + L1MC1 LINE L1 5450 5829 -504 2069 123 16 7 chr4 42830633 42830942 -159497405 + AluSx SINE Alu 1 312 0 4948 123 41 39 chr4 42830942 42831398 -159496949 + L1MC1 LINE L1 5829 6288 -45 326 100 0 20 chr4 42831420 42831470 -159496877 - AluSq/x SINE Alu -198 105 57 809 161 8 0 chr4 42831487 42831611 -159496736 + FLAM_C SINE Alu 2 126 -17 21 0 0 0 chr4 42832718 42832739 -159495608 + AT_rich Low_complexity Low_complexity 1 21 0 2392 85 7 0 chr4 42833281 42833575 -159494772 - AluSq SINE Alu -17 296 1 545 266 102 51 chr4 42833577 42833931 -159494416 - L1MC4a LINE L1 -1926 5882 5511 214 270 34 56 chr4 42834499 42834588 -159493759 + L2 LINE L2 3185 3271 -1 1936 156 0 7 chr4 42835145 42835446 -159492901 + AluSx SINE Alu 1 299 -13 23 0 0 0 chr4 42835719 42835742 -159492605 + AT_rich Low_complexity Low_complexity 1 23 0 421 219 39 101 chr4 42836801 42836979 -159491368 + MIR SINE MIR 24 190 -72 2019 129 0 4 chr4 42837256 42837566 -159490781 + AluSg SINE Alu 1 309 0 23 0 0 0 chr4 42837675 42837698 -159490649 + AT_rich Low_complexity Low_complexity 1 23 0 484 313 51 63 chr4 42838022 42838373 -159489974 + L2 LINE L2 2926 3272 0 2221 166 58 7 chr4 42839188 42839651 -159488696 + L1MB7 LINE L1 5677 6163 -21 1899 195 67 50 chr4 42839682 42840246 -159488101 + L1MC4a LINE L1 7138 7711 -97 2080 132 3 7 chr4 42840681 42840976 -159487371 + AluSx SINE Alu 1 294 -18 252 167 37 0 chr4 42841823 42841877 -159486470 + MLT1J LTR MaLR 111 166 -345 289 246 329 6 chr4 42841957 42842124 -159486223 + MLT1L LTR MaLR 306 526 -89 557 306 68 42 chr4 42844174 42844481 -159483866 + L2 LINE L2 158 472 -2842 1770 292 126 47 chr4 42844641 42845772 -159482575 + L2 LINE L2 1553 2852 -461 2249 93 3 3 chr4 42845772 42846073 -159482274 + AluSp SINE Alu 1 301 -12 1770 292 126 47 chr4 42846073 42846516 -159481831 + L2 LINE L2 2852 3259 -54 214 304 54 11 chr4 42847445 42847537 -159480810 - MER5A DNA MER1_type -26 163 68 2342 68 0 3 chr4 42847698 42847992 -159480355 + AluY SINE Alu 1 293 -18 264 372 0 0 chr4 42848087 42848165 -159480182 - MER5A DNA MER1_type 0 189 112 490 243 292 0 chr4 42848947 42849149 -159479198 - MIR SINE MIR 0 262 2 785 240 64 0 chr4 42849152 42849356 -159478991 + MIR SINE MIR 40 256 -6 554 134 0 80 chr4 42849492 42849604 -159478743 - Tigger7 DNA MER2_type 0 2487 2385 * 1473 194 4 8 chr4 42849599 42849867 -159478480 - Tigger7 DNA MER2_type -2220 267 1 2459 85 3 0 chr4 42849891 42850198 -159478149 + AluSp SINE Alu 1 308 -5 40 0 0 0 chr4 42851920 42851960 -159476387 + AT_rich Low_complexity Low_complexity 1 40 0 1516 179 12 8 chr4 42851990 42852247 -159476100 + AluJb SINE Alu 44 301 -11 941 191 0 0 chr4 42852457 42852619 -159475728 + FRAM SINE Alu 2 163 -3 1759 167 43 3 chr4 42852625 42852925 -159475422 + AluJb SINE Alu 1 312 0 23 0 0 0 chr4 42853034 42853057 -159475290 + AT_rich Low_complexity Low_complexity 1 23 0 232 363 0 12 chr4 42854452 42854532 -159473815 - L2 LINE L2 -16 3256 3178 2145 262 85 33 chr4 42854750 42855224 -159473123 + L2 LINE L2 1964 2412 -902 1966 149 0 0 chr4 42855224 42855506 -159472841 - AluJb SINE Alu -30 282 1 2145 262 85 33 chr4 42855506 42855767 -159472580 + L2 LINE L2 2412 2745 -569 1776 127 91 4 chr4 42855767 42856042 -159472305 + AluSg SINE Alu 1 299 -11 2145 262 85 33 chr4 42856042 42856092 -159472255 + L2 LINE L2 2745 2791 -523 22 0 0 0 chr4 42857231 42857253 -159471094 + AT_rich Low_complexity Low_complexity 1 22 0 1784 164 24 14 chr4 42857673 42857966 -159470381 + AluJb SINE Alu 1 296 -16 1115 262 196 12 chr4 42858089 42858771 -159469576 - L2 LINE L2 -13 3300 2502 234 0 0 0 chr4 42858951 42858977 -159469370 + (A)n Simple_repeat Simple_repeat 1 26 0 1500 143 23 53 chr4 42859043 42859179 -159469168 + AluJo SINE Alu 1 127 -185 1527 116 112 0 chr4 42859179 42859411 -159468936 + AluSx SINE Alu 49 306 -6 1500 143 23 53 chr4 42859411 42859540 -159468807 + AluJo SINE Alu 127 258 -54 2124 124 3 0 chr4 42859576 42859867 -159468480 + AluSx SINE Alu 1 292 -20 237 154 39 58 chr4 42859991 42860043 -159468304 - L2 LINE L2 -6 3266 3216 25 51 0 0 chr4 42860119 42860158 -159468189 + AT_rich Low_complexity Low_complexity 1 39 0 192 200 0 0 chr4 42860718 42860758 -159467589 + (TA)n Simple_repeat Simple_repeat 2 41 0 416 276 113 23 chr4 42861378 42861683 -159466664 + L1ME4a LINE L1 5704 6050 -71 2050 126 85 18 chr4 42861692 42862033 -159466314 + THE1B LTR MaLR 1 364 0 422 303 107 32 chr4 42862288 42862598 -159465749 - L3 LINE CR1 -41 1536 1204 910 110 24 0 chr4 42862659 42862786 -159465561 + FLAM_C SINE Alu 1 130 -13 222 309 95 0 chr4 42862947 42863031 -159465316 + MIR3 SINE MIR 113 204 -4 473 278 115 26 chr4 42863102 42863372 -159464975 + L1ME LINE L1 5529 5822 -299 23 0 0 0 chr4 42864040 42864063 -159464284 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr4 42865683 42865707 -159462640 + AT_rich Low_complexity Low_complexity 1 24 0 355 315 143 60 chr4 42866031 42866379 -159461968 + L3 LINE CR1 83 400 -1177 973 182 106 0 chr4 42866379 42866577 -159461770 - MER20 DNA MER1_type 0 219 1 355 315 143 60 chr4 42866577 42866850 -159461497 + L3 LINE CR1 400 756 -821 2460 73 3 0 chr4 42866916 42867218 -159461129 + AluSp SINE Alu 1 303 -10 342 0 0 0 chr4 42867259 42867297 -159461050 + (TG)n Simple_repeat Simple_repeat 2 39 0 24 0 0 0 chr4 42867311 42867335 -159461012 + AT_rich Low_complexity Low_complexity 1 24 0 979 163 27 5 chr4 42868232 42868453 -159459894 - Charlie5 DNA MER1_type 0 2623 2398 4451 185 34 8 chr4 42868469 42869547 -159458800 - L1MA9 LINE L1 -38 6274 5169 414 230 17 17 chr4 42869549 42869668 -159458679 - MER33 DNA MER1_type -265 59 1 578 259 32 60 chr4 42869798 42869983 -159458364 - MIR SINE MIR 0 262 83 333 67 0 0 chr4 42870231 42870276 -159458071 + LTR54 LTR ERV1 402 446 -64 1849 143 38 126 chr4 42872449 42872855 -159455492 - MLT1D LTR MaLR 0 505 159 2280 89 24 0 chr4 42872855 42873146 -159455201 - AluSx SINE Alu -14 298 1 1849 143 38 126 chr4 42873146 42873293 -159455054 - MLT1D LTR MaLR -346 159 1 223 279 0 0 chr4 42873338 42873381 -159454966 + L2 LINE L2 3251 3293 -20 2248 107 0 7 chr4 42873653 42873952 -159454395 + AluSx SINE Alu 1 297 -15 27 0 0 26 chr4 42874291 42874308 -159454039 + AT_rich Low_complexity Low_complexity 1 17 -20 1460 163 16 82 chr4 42874308 42874614 -159453733 + AluSx SINE Alu 5 290 -22 27 0 0 26 chr4 42874614 42874634 -159453713 + AT_rich Low_complexity Low_complexity 17 37 0 2032 112 24 20 chr4 42874846 42875140 -159453207 - AluSx SINE Alu -13 299 5 1553 80 0 0 chr4 42875350 42875538 -159452809 - AluY SINE Alu -18 293 106 963 172 20 44 chr4 42875567 42875771 -159452576 + MER20 DNA MER1_type 1 199 -20 2389 88 3 0 chr4 42876018 42876315 -159452032 + AluSp SINE Alu 1 298 -15 1090 240 35 35 chr4 42876566 42876908 -159451439 + L1ME LINE L1 292 633 -5437 1015 224 101 58 chr4 42876939 42877336 -159451011 + MLT2D LTR ERVL 1 414 0 2637 204 21 38 chr4 42877336 42877967 -159450380 + MLT1-int LTR MaLR 1 620 -751 342 167 97 0 chr4 42877968 42878040 -159450307 + AluS SINE Alu 1 79 -223 1153 105 6 12 chr4 42878141 42878362 -159449985 + AluSg/x SINE Alu 124 343 0 292 220 0 0 chr4 42878362 42878421 -159449926 + MLT1-int LTR MaLR 611 669 -702 287 261 0 0 chr4 42878426 42878495 -159449852 + MLT1-int LTR MaLR 819 887 -484 293 197 0 56 chr4 42878530 42878601 -159449746 + MLT-int LTR MaLR 678 744 -991 2131 226 19 11 chr4 42878665 42879133 -159449214 + MLT1A2-int LTR MaLR 1264 1735 0 598 256 17 23 chr4 42879133 42879309 -159449038 + MLT1A2 LTR MaLR 1 175 -199 312 222 0 12 chr4 42879378 42879459 -159448888 + MLT1A2 LTR MaLR 178 257 -108 1761 271 76 18 chr4 42879502 42879600 -159448747 + L1M4b LINE L1 1413 1504 -5634 2211 106 3 0 chr4 42879600 42879892 -159448455 + AluSp SINE Alu 1 293 -20 1761 271 76 18 chr4 42879892 42880835 -159447512 + L1M4b LINE L1 1504 2686 -4452 2522 62 0 3 chr4 42880851 42881158 -159447189 + AluY SINE Alu 6 311 0 810 236 7 17 chr4 42881982 42882275 -159446072 + AluY SINE Alu 22 311 0 2311 94 0 16 chr4 42882670 42882978 -159445369 + AluSx SINE Alu 1 303 -9 448 286 105 0 chr4 42883473 42883606 -159444741 + MIR SINE MIR 5 151 -111 189 0 0 0 chr4 42884018 42884039 -159444308 + (CA)n Simple_repeat Simple_repeat 2 22 0 1992 158 10 6 chr4 42884109 42884420 -159443927 + AluSx SINE Alu 1 312 0 662 208 23 0 chr4 42885627 42885757 -159442590 + FLAM_A SINE Alu 1 133 0 1910 162 7 0 chr4 42885790 42886087 -159442260 + AluSx SINE Alu 1 299 -13 351 0 0 0 chr4 42886088 42886127 -159442220 + (CA)n Simple_repeat Simple_repeat 2 40 0 1587 152 20 54 chr4 42886130 42886426 -159441921 + AluJo SINE Alu 1 286 -26 457 243 102 52 chr4 42886457 42886711 -159441636 + L1ME LINE L1 5280 5558 -563 2360 94 0 0 chr4 42886711 42887008 -159441339 + AluSc SINE Alu 1 297 -12 457 243 102 52 chr4 42887008 42887099 -159441248 + L1ME LINE L1 5558 5643 -478 2091 116 3 7 chr4 42887108 42887402 -159440945 + AluSg SINE Alu 1 293 -17 473 254 70 0 chr4 42887969 42888083 -159440264 - L2 LINE L2 0 3313 3192 2034 117 34 7 chr4 42888606 42888897 -159439450 - AluSg SINE Alu -11 299 1 2244 92 14 3 chr4 42888983 42889276 -159439071 + AluSp SINE Alu 1 296 -17 232 171 0 0 chr4 42889544 42889579 -159438768 - L2 LINE L2 -95 3218 3184 244 296 131 48 chr4 42889862 42890214 -159438133 + L2 LINE L2 2209 2589 -725 2832 98 18 48 chr4 42890285 42890538 -159437809 + L1PB1 LINE L1 5725 5961 -190 2485 61 0 0 chr4 42890538 42890831 -159437516 + AluY SINE Alu 8 300 -11 2832 98 18 48 chr4 42890831 42891016 -159437331 + L1PB1 LINE L1 5961 6150 -1 29 0 0 0 chr4 42891016 42891045 -159437302 + AT_rich Low_complexity Low_complexity 1 29 0 1957 131 3 48 chr4 42891075 42891209 -159437138 + AluSx SINE Alu 1 139 -173 1992 123 0 11 chr4 42891209 42891494 -159436853 + AluSx SINE Alu 1 282 -30 517 14 14 14 chr4 42891499 42891570 -159436777 + (TAAAA)n Simple_repeat Simple_repeat 2 72 0 1957 131 3 48 chr4 42891570 42891743 -159436604 + AluSx SINE Alu 143 300 -12 1976 126 0 0 chr4 42892097 42892368 -159435979 + AluSx SINE Alu 1 271 -41 225 0 0 0 chr4 42892375 42892400 -159435947 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 3934 195 78 19 chr4 42892457 42892757 -159435590 + L1M4 LINE L1 4053 4334 -1812 1937 71 61 11 chr4 42892757 42893037 -159435310 + AluY SINE Alu 1 294 -17 3934 195 78 19 chr4 42893037 42893706 -159434641 + L1M4 LINE L1 4334 5080 -1066 278 254 114 0 chr4 42894813 42894927 -159433420 - L1MC/D LINE L1 -1942 5866 5740 1889 148 16 16 chr4 42895002 42895312 -159433035 + AluSx SINE Alu 1 310 -2 971 193 12 12 chr4 42895331 42895497 -159432850 + FRAM SINE Alu 1 166 0 445 184 43 85 chr4 42896116 42896257 -159432090 - MIR SINE MIR -54 208 74 206 288 303 0 chr4 42896418 42896484 -159431863 + MIR SINE MIR 3 89 -119 207 0 0 0 chr4 42896551 42896574 -159431773 + (A)n Simple_repeat Simple_repeat 1 23 0 2153 92 7 7 chr4 42898116 42898411 -159429936 + AluSx SINE Alu 1 295 -17 284 238 191 0 chr4 42898825 42898909 -159429438 + MIR SINE MIR 31 130 -132 1152 214 231 30 chr4 42899224 42899630 -159428717 + MLT1H1 LTR MaLR 66 553 -2 314 182 36 36 chr4 42899650 42899706 -159428641 + Alu SINE Alu 1 48 -253 5607 125 8 43 chr4 42899741 42900345 -159428002 - Tigger4(Zombi) DNA MER2_type -1489 1242 679 2089 97 0 0 chr4 42900345 42900614 -159427733 - AluSg SINE Alu -13 297 29 5607 125 8 43 chr4 42900614 42900921 -159427426 - Tigger4(Zombi) DNA MER2_type -2052 679 363 732 153 0 93 chr4 42900929 42901079 -159427268 + FLAM_C SINE Alu 2 137 -6 2202 136 0 0 chr4 42901205 42901507 -159426840 - AluSx SINE Alu -10 302 1 2401 119 22 38 chr4 42901520 42901890 -159426457 + THE1B LTR MaLR 1 364 0 13030 73 10 0 chr4 42901890 42903454 -159424893 + THE1B-int LTR MaLR 1 1580 0 2417 123 22 30 chr4 42903454 42903821 -159424526 + THE1B LTR MaLR 1 364 0 224 29 86 0 chr4 42904180 42904215 -159424132 + T-rich Low_complexity Low_complexity 2 39 0 829 125 0 0 chr4 42904215 42904335 -159424012 - FLAM_C SINE Alu -23 120 1 277 89 0 0 chr4 42904666 42904711 -159423636 - Alu SINE Alu 0 308 264 861 119 0 0 chr4 42904721 42904839 -159423508 - AluSq/x SINE Alu -194 119 2 2360 86 3 0 chr4 42904885 42905176 -159423171 + AluSp SINE Alu 1 292 -21 1708 156 7 30 chr4 42905574 42905869 -159422478 - AluSx SINE Alu -19 293 6 1152 65 179 6 chr4 42905998 42906166 -159422181 - AluYa8 SINE Alu -8 302 106 16110 141 18 20 chr4 42907569 42907635 -159420712 - L1MA2 LINE L1 -108 7615 7550 2072 71 93 0 chr4 42907635 42907904 -159420443 - AluSp SINE Alu -19 294 1 16110 141 18 20 chr4 42907904 42908147 -159420200 - L1MA2 LINE L1 -173 7550 7308 2376 100 0 0 chr4 42908147 42908448 -159419899 - AluSg SINE Alu -1 309 9 16110 141 18 20 chr4 42908448 42909972 -159418375 - L1MA2 LINE L1 -415 7308 5782 1695 106 80 4 chr4 42909972 42910274 -159418073 - AluSx SINE Alu 0 322 1 16110 141 18 20 chr4 42910274 42912319 -159416028 - L1MA2 LINE L1 -1941 5782 3741 1162 67 0 0 chr4 42912324 42912474 -159415873 - L1PA8 LINE L1 -104 6068 5919 * 18549 135 27 62 chr4 42912471 42912709 -159415638 - L1MA2 LINE L1 -4338 3227 2982 2150 117 0 17 chr4 42912709 42913009 -159415338 - AluSx SINE Alu -17 295 1 18549 135 27 62 chr4 42913009 42913660 -159414687 - L1MA2 LINE L1 -4583 2982 2310 2199 109 3 3 chr4 42913660 42913964 -159414383 + AluSp SINE Alu 1 304 -9 18549 135 27 62 chr4 42913964 42914053 -159414294 - L1MA2 LINE L1 -5255 2310 2219 1674 124 4 8 chr4 42914053 42914302 -159414045 - AluSp SINE Alu -60 253 6 18549 135 27 62 chr4 42914302 42916649 -159411698 - L1MA2 LINE L1 -5346 2219 17 1612 138 16 81 chr4 42916649 42916824 -159411523 - AluJo SINE Alu -13 299 153 2319 103 0 3 chr4 42916824 42917126 -159411221 - AluSg SINE Alu -9 301 1 1612 138 16 81 chr4 42917126 42917270 -159411077 - AluJo SINE Alu -159 153 1 1573 173 38 0 chr4 42917282 42917571 -159410776 - AluJo SINE Alu -2 310 11 27 29 0 0 chr4 42917727 42917761 -159410586 + AT_rich Low_complexity Low_complexity 1 34 0 2223 108 0 0 chr4 42917809 42918105 -159410242 - AluSq SINE Alu -17 296 1 3717 209 44 92 chr4 42918118 42918784 -159409563 + L1MC4a LINE L1 6568 7265 -543 2289 94 0 10 chr4 42918784 42919110 -159409237 + AluSc SINE Alu 1 323 0 3717 209 44 92 chr4 42919110 42919165 -159409182 + L1MC4a LINE L1 7265 7321 -487 2254 92 0 3 chr4 42919165 42919459 -159408888 + AluSg SINE Alu 1 293 -17 3717 209 44 92 chr4 42919459 42920073 -159408274 + L1MC4a LINE L1 7321 7808 0 835 138 9 0 chr4 42920158 42920274 -159408073 + FLAM_C SINE Alu 2 118 -15 2293 108 0 0 chr4 42920299 42920596 -159407751 + AluSg SINE Alu 1 297 -13 1860 147 0 13 chr4 42920710 42921010 -159407337 + AluJb SINE Alu 1 296 -16 878 221 0 17 chr4 42921076 42921248 -159407099 - FRAM SINE Alu -7 169 1 2555 257 93 33 chr4 42921266 42922164 -159406183 + L2 LINE L2 1997 2948 -366 194 0 0 37 chr4 42922432 42922459 -159405888 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 748 265 53 8 chr4 42922728 42922811 -159405536 + HAL1 LINE L1 1548 1626 -881 2134 108 11 0 chr4 42922811 42923141 -159405206 - AluSg SINE Alu 0 333 1 748 265 53 8 chr4 42923141 42923301 -159405046 + HAL1 LINE L1 1626 1803 -704 538 247 171 65 chr4 42923406 42923726 -159404621 + HAL1 LINE L1 1691 1976 -531 2329 110 0 7 chr4 42923726 42924036 -159404311 + AluSx SINE Alu 1 308 -4 538 247 171 65 chr4 42924036 42924266 -159404081 + HAL1 LINE L1 1976 2299 -208 2094 130 3 7 chr4 42924274 42924582 -159403765 + AluSx SINE Alu 1 307 -5 705 142 16 8 chr4 42924694 42924821 -159403526 + L1MB8 LINE L1 6051 6178 0 3974 111 5 12 chr4 42924898 42925474 -159402873 + L1MA5 LINE L1 5723 6294 -6 707 213 0 0 chr4 42925498 42925620 -159402727 + FLAM_A SINE Alu 6 127 -15 279 216 0 0 chr4 42925662 42925713 -159402634 + L3 LINE CR1 1525 1575 -2 2095 142 0 0 chr4 42925861 42926157 -159402190 + AluSx SINE Alu 3 298 -14 1642 185 29 77 chr4 42926216 42926412 -159401935 - MLT1A1 LTR MaLR 0 365 161 1255 158 224 8 chr4 42926412 42926666 -159401681 + AluSg SINE Alu 1 309 -1 1642 185 29 77 chr4 42926666 42926694 -159401653 - MLT1A1 LTR MaLR -204 161 133 2217 91 31 0 chr4 42926694 42926981 -159401366 - AluSg SINE Alu -14 296 1 1642 185 29 77 chr4 42926981 42927134 -159401213 - MLT1A1 LTR MaLR -232 133 5 1873 150 6 31 chr4 42927286 42927606 -159400741 - AluJb SINE Alu 0 312 1 1018 96 22 0 chr4 42927607 42927743 -159400604 - AluJb SINE Alu -171 141 3 1277 171 3 108 chr4 42927817 42927989 -159400358 - AluSp SINE Alu -28 285 97 3002 140 17 42 chr4 42927989 42928020 -159400327 - L1MB3 LINE L1 -2 6181 6151 2198 99 17 14 chr4 42928020 42928149 -159400198 + AluSg SINE Alu 1 128 -182 2674 42 0 0 chr4 42928149 42928460 -159399887 + AluY SINE Alu 1 311 0 2198 99 17 14 chr4 42928460 42928624 -159399723 + AluSg SINE Alu 128 295 -15 3002 140 17 42 chr4 42928624 42929119 -159399228 - L1MB3 LINE L1 -32 6151 5668 1760 137 54 7 chr4 42929119 42929418 -159398929 - AluSg SINE Alu 0 310 5 1277 171 3 108 chr4 42929418 42929531 -159398816 - AluSp SINE Alu -214 99 29 1186 194 16 25 chr4 42929545 42929787 -159398560 - L1MB3 LINE L1 -510 5673 5434 2365 107 3 0 chr4 42929978 42930286 -159398061 - AluSg SINE Alu -1 309 1 1212 187 9 23 chr4 42930324 42930543 -159397804 - AluJb SINE Alu -12 300 85 356 217 12 12 chr4 42930546 42930629 -159397718 - L1MB3 LINE L1 -1768 4378 4296 570 167 73 0 chr4 42930629 42930725 -159397622 + U6 snRNA snRNA 1 103 -4 231 174 43 0 chr4 42930732 42930778 -159397569 + Alu SINE Alu 86 133 0 244 254 0 0 chr4 42930835 42930890 -159397457 + A-rich Low_complexity Low_complexity 1 55 0 2093 123 10 23 chr4 42930900 42931210 -159397137 + AluSx SINE Alu 1 306 -6 2232 101 0 0 chr4 42931210 42931497 -159396850 + AluY SINE Alu 1 287 -24 321 243 156 10 chr4 42931497 42931631 -159396716 + MLT1C LTR MaLR 212 388 -117 1025 241 15 23 chr4 42931822 42932087 -159396260 - L1MB3 LINE L1 -1839 4307 4045 963 217 6 0 chr4 42932095 42932261 -159396086 - FAM SINE Alu -7 168 2 2192 118 3 10 chr4 42932323 42932628 -159395719 - AluSx SINE Alu -9 303 1 679 301 91 72 chr4 42932778 42933058 -159395289 - L1ME4a LINE L1 -260 5861 5588 1659 124 167 8 chr4 42933058 42933316 -159395031 + AluSg SINE Alu 1 299 -1 956 220 0 12 chr4 42933318 42933486 -159394861 + AluJo/FRAM SINE Alu 137 302 0 282 116 0 0 chr4 42933494 42933537 -159394810 + (TA)n Simple_repeat Simple_repeat 2 44 0 679 301 91 72 chr4 42933537 42933644 -159394703 - L1ME4a LINE L1 -539 5582 5479 2399 77 3 3 chr4 42933644 42933944 -159394403 + AluSx SINE Alu 1 300 -12 679 301 91 72 chr4 42933944 42934124 -159394223 - L1ME4a LINE L1 -642 5479 5270 48 53 0 0 chr4 42934194 42934270 -159394077 + AT_rich Low_complexity Low_complexity 1 76 0 283 186 47 23 chr4 42934328 42934414 -159393933 - L1MB2 LINE L1 0 6171 6084 880 174 0 0 chr4 42934631 42934763 -159393584 - FLAM_C SINE Alu -1 132 1 287 284 95 21 chr4 42934777 42934872 -159393475 - L2 LINE L2 -2 3270 3169 261 57 0 0 chr4 42934884 42934919 -159393428 + (GA)n Simple_repeat Simple_repeat 2 36 0 1977 87 33 4 chr4 42935075 42935351 -159392996 + L1PA13 LINE L1 5880 6163 0 2556 47 0 0 chr4 42935366 42935666 -159392681 + AluY SINE Alu 1 300 -11 288 176 0 0 chr4 42935889 42935940 -159392407 - MIR SINE MIR -25 237 187 427 183 349 0 chr4 42935975 42936101 -159392246 - MIR SINE MIR -62 200 31 2435 93 3 0 chr4 42936122 42936434 -159391913 - AluSq SINE Alu 0 313 1 732 180 0 39 chr4 42936443 42936571 -159391776 - FLAM_A SINE Alu -10 123 1 1201 185 0 10 chr4 42936635 42936864 -159391483 - AluJo SINE Alu 0 312 86 2175 130 10 0 chr4 42937074 42937382 -159390965 - AluSx SINE Alu -1 311 1 1672 168 11 7 chr4 42937419 42937705 -159390642 + AluJo SINE Alu 1 287 -25 40 73 0 0 chr4 42937698 42937780 -159390567 + AT_rich Low_complexity Low_complexity 1 82 0 201 122 0 49 chr4 42939666 42939707 -159388640 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 652 290 6 0 chr4 42939945 42940121 -159388226 - MIR SINE MIR 0 262 86 1300 132 6 0 chr4 42940769 42940951 -159387396 - AluSg/x SINE Alu -10 300 118 2213 109 13 0 chr4 42941093 42941396 -159386951 + AluSg SINE Alu 1 307 -3 21 0 0 0 chr4 42941811 42941832 -159386515 + AT_rich Low_complexity Low_complexity 1 21 0 1513 71 33 19 chr4 42942492 42942729 -159385618 - AluSp SINE Alu 0 308 69 861 64 0 0 chr4 42942754 42942913 -159385434 - AluSg/x SINE Alu 0 333 175 1209 101 0 0 chr4 42942972 42943131 -159385216 - AluSg/x SINE Alu -17 295 137 476 126 320 39 chr4 42943184 42943287 -159385060 + FLAM_C SINE Alu 1 132 -1 524 134 12 0 chr4 42943298 42943380 -159384967 + L1PB3 LINE L1 5868 5950 -204 302 87 12 22 chr4 42943388 42943443 -159384904 - L1PB3 LINE L1 -192 5959 5905 1252 136 10 20 chr4 42943472 42943671 -159384676 + L1PB3 LINE L1 5956 6152 -2 182 229 125 0 chr4 42943740 42943788 -159384559 - MIR SINE MIR -76 186 133 394 306 106 68 chr4 42944058 42944293 -159384054 + L2 LINE L2 3026 3269 -3 532 207 26 9 chr4 42944405 42944521 -159383826 - MLT1K LTR MaLR 0 588 471 1644 172 3 50 chr4 42944875 42945215 -159383132 + AluJb SINE Alu 1 326 0 1186 145 18 61 chr4 42945341 42945569 -159382778 - MER20 DNA MER1_type -1 218 1 2434 97 0 0 chr4 42946036 42946344 -159382003 + AluSg SINE Alu 1 308 -2 1435 116 5 0 chr4 42946460 42946659 -159381688 - AluSx SINE Alu -112 200 1 949 218 0 0 chr4 42946794 42946959 -159381388 + FRAM SINE Alu 1 165 -1 26 50 0 0 chr4 42947083 42947123 -159381224 + AT_rich Low_complexity Low_complexity 1 40 0 279 0 0 0 chr4 42947555 42947586 -159380761 + (CA)n Simple_repeat Simple_repeat 2 32 0 236 242 74 21 chr4 42947684 42947779 -159380568 + L1MC5 LINE L1 7832 7931 -30 1658 189 13 17 chr4 42947945 42948246 -159380101 + AluJo SINE Alu 1 300 -12 1826 122 76 0 chr4 42948751 42949041 -159379306 - AluSp SINE Alu 0 310 1 477 303 72 10 chr4 42949170 42949367 -159378980 - MIR SINE MIR -10 252 45 2074 109 20 10 chr4 42949690 42949984 -159378363 - AluSx SINE Alu -15 297 1 2084 143 13 0 chr4 42950112 42950419 -159377928 + AluSx SINE Alu 1 311 -1 2259 99 10 10 chr4 42950938 42951241 -159377106 + AluSx SINE Alu 1 303 -9 1296 118 0 0 chr4 42951241 42951410 -159376937 + AluSq SINE Alu 134 302 -11 1889 151 35 3 chr4 42951977 42952262 -159376085 - AluJb SINE Alu -18 294 1 256 240 50 84 chr4 42952266 42952445 -159375902 - L1ME4a LINE L1 -3 6118 5946 1976 144 7 17 chr4 42952914 42953213 -159375134 + AluSx SINE Alu 1 296 -16 1989 121 7 4 chr4 42953213 42953492 -159374855 - AluSx SINE Alu -31 281 1 341 277 66 108 chr4 42953665 42953831 -159374516 + MIR3 SINE MIR 30 188 -20 633 296 17 0 chr4 42953875 42954047 -159374300 + MIR SINE MIR 88 262 0 2276 100 0 17 chr4 42954212 42954513 -159373834 - AluSx SINE Alu -16 296 1 187 115 0 0 chr4 42954990 42955016 -159373331 + MIR SINE MIR 49 74 -188 281 252 126 39 chr4 42955126 42955253 -159373094 - L2 LINE L2 -3 3269 3132 28 0 0 0 chr4 42955289 42955317 -159373030 + AT_rich Low_complexity Low_complexity 1 28 0 661 139 191 0 chr4 42955351 42955466 -159372881 + AluJo SINE Alu 2 138 -174 2176 128 3 3 chr4 42955511 42955816 -159372531 - AluJb SINE Alu -6 306 2 372 247 0 0 chr4 42955923 42956008 -159372339 - MER69 DNA AcHobo -2441 85 1 21 0 0 0 chr4 42956036 42956057 -159372290 + AT_rich Low_complexity Low_complexity 1 21 0 2229 109 10 0 chr4 42956073 42956375 -159371972 - AluSx SINE Alu -7 305 1 1897 148 0 40 chr4 42956885 42957188 -159371159 - AluJb SINE Alu -21 291 1 2204 110 3 16 chr4 42957282 42957418 -159370929 + AluSx SINE Alu 1 137 -175 2262 88 3 0 chr4 42957418 42957712 -159370635 + AluY SINE Alu 1 295 -16 2204 110 3 16 chr4 42957712 42957885 -159370462 + AluSx SINE Alu 137 306 -6 1777 153 7 17 chr4 42958137 42958431 -159369916 - AluJo SINE Alu -17 295 5 523 191 0 0 chr4 42958541 42958630 -159369717 + FLAM SINE Alu 43 131 -12 2329 103 0 0 chr4 42958647 42958948 -159369399 + AluSx SINE Alu 1 301 -11 353 340 16 24 chr4 42959231 42959420 -159368927 - MIR SINE MIR -55 207 20 2357 106 0 3 chr4 42959593 42959905 -159368442 + AluSq SINE Alu 3 313 0 27 49 0 0 chr4 42960125 42960166 -159368181 + AT_rich Low_complexity Low_complexity 1 41 0 2199 93 0 7 chr4 42960166 42960455 -159367892 - AluSq SINE Alu -26 287 1 2201 112 0 29 chr4 42962040 42962354 -159365993 - AluSx SINE Alu -5 307 3 1826 153 3 42 chr4 42962362 42962675 -159365672 - AluJb SINE Alu -11 301 1 2351 67 3 27 chr4 42962698 42962997 -159365350 - AluSp SINE Alu -21 292 1 2177 119 3 0 chr4 42963451 42963746 -159364601 + AluSx SINE Alu 1 296 -16 23 0 0 0 chr4 42963964 42963987 -159364360 + AT_rich Low_complexity Low_complexity 1 23 0 659 275 66 41 chr4 42964224 42964328 -159364019 - MIR SINE MIR 0 262 162 2240 105 0 3 chr4 42964328 42964624 -159363723 - AluSq SINE Alu -16 297 3 659 275 66 41 chr4 42964624 42964779 -159363568 - MIR SINE MIR -100 162 4 540 226 16 8 chr4 42964815 42964939 -159363408 - MIR SINE MIR 0 262 138 2378 109 0 0 chr4 42965024 42965335 -159363012 + AluSx SINE Alu 1 311 -1 2359 92 0 0 chr4 42966259 42966553 -159361794 - AluSx SINE Alu -18 294 1 2045 125 10 3 chr4 42966575 42966864 -159361483 - AluSx SINE Alu -21 291 1 2351 109 0 0 chr4 42966869 42967172 -159361175 - AluSq SINE Alu -10 303 1 2373 102 0 9 chr4 42968141 42968456 -159359891 - AluSq SINE Alu -1 312 1 359 261 23 0 chr4 42968501 42968589 -159359758 - MIR3 SINE MIR -8 200 111 216 272 152 11 chr4 42969611 42969703 -159358644 - L2 LINE L2 -22 3250 3146 608 256 103 51 chr4 42969890 42970202 -159358145 + L2 LINE L2 2984 3311 -2 21 0 0 0 chr4 42970218 42970239 -159358108 + AT_rich Low_complexity Low_complexity 1 21 0 304 270 0 14 chr4 42970270 42970344 -159358003 - MIR3 SINE MIR -21 187 115 1653 193 17 3 chr4 42970450 42970745 -159357602 - AluJo SINE Alu -13 299 1 277 276 0 0 chr4 42970759 42970817 -159357530 - MIR SINE MIR -115 147 90 2109 95 0 89 chr4 42970901 42971105 -159357242 - AluSx SINE Alu -1 311 147 2161 120 0 23 chr4 42971105 42971414 -159356933 - AluSq SINE Alu -11 302 1 2109 95 0 89 chr4 42971414 42971547 -159356800 - AluSx SINE Alu -165 147 4 2186 129 3 3 chr4 42971580 42971890 -159356457 - AluSx SINE Alu 0 312 3 1646 121 106 4 chr4 42972039 42972304 -159356043 - AluSq SINE Alu -21 292 1 1967 155 7 0 chr4 42972311 42972602 -159355745 - AluSx SINE Alu -19 293 1 383 337 12 66 chr4 42972990 42973113 -159355234 - MLT1K LTR MaLR -378 210 82 671 125 21 0 chr4 42973113 42973209 -159355138 + HY3 scRNA scRNA 1 98 -3 405 0 0 0 chr4 42973214 42973259 -159355088 + (TAAA)n Simple_repeat Simple_repeat 4 48 0 383 337 12 66 chr4 42973259 42973295 -159355052 - MLT1K LTR MaLR -510 78 54 1834 128 40 40 chr4 42973408 42973704 -159354643 + AluJb SINE Alu 1 296 -16 2095 210 184 84 chr4 42973775 42973884 -159354463 - L1MC4 LINE L1 -1 8041 7944 2285 98 0 3 chr4 42973884 42974180 -159354167 - AluSg SINE Alu -15 295 1 2095 210 184 84 chr4 42974180 42974688 -159353659 - L1MC4 LINE L1 -98 7944 7489 568 210 0 57 chr4 42974688 42974812 -159353535 + FLAM_C SINE Alu 1 117 -16 2095 210 184 84 chr4 42974812 42974910 -159353437 - L1MC4 LINE L1 -553 7489 7402 1916 132 6 49 chr4 42974910 42975236 -159353111 + AluSx SINE Alu 1 312 0 2095 210 184 84 chr4 42975236 42975321 -159353026 - L1MC4 LINE L1 -640 7402 7327 2260 79 7 0 chr4 42975321 42975629 -159352718 + AluSq SINE Alu 1 310 0 2095 210 184 84 chr4 42975629 42975984 -159352363 - L1MC4 LINE L1 -715 7327 6765 209 337 12 0 chr4 42976638 42976721 -159351626 - MIR SINE MIR -71 191 108 2271 82 0 58 chr4 42976939 42977267 -159351080 - AluSp SINE Alu -4 309 1 420 109 94 0 chr4 42977666 42977730 -159350617 + AluJ/FLAM SINE Alu 2 71 -241 579 108 36 0 chr4 42979243 42979326 -159349021 - L1MA1 LINE L1 -9 6293 6208 205 330 43 32 chr4 42979326 42979413 -159348934 - L2 LINE L2 -1999 1315 1225 1974 124 26 10 chr4 42980488 42980794 -159347553 + AluSq SINE Alu 1 311 -2 2273 110 3 0 chr4 42981089 42981399 -159346948 + AluSx SINE Alu 1 311 -1 1578 170 52 0 chr4 42983135 42983405 -159344942 + AluJb SINE Alu 4 287 -25 502 289 168 36 chr4 42983815 42984179 -159344168 - L2 LINE L2 -35 3278 2867 248 288 280 0 chr4 42984254 42984372 -159343975 - L2 LINE L2 -561 2753 2603 1086 218 41 26 chr4 42984633 42984904 -159343443 + AluJo SINE Alu 5 279 -33 331 191 133 29 chr4 42985154 42985259 -159343088 - L2 LINE L2 -2447 867 752 1611 105 5 5 chr4 42986517 42986736 -159341611 + AluSc SINE Alu 1 219 -90 681 191 0 0 chr4 42986894 42986999 -159341348 + AluJo SINE Alu 38 142 -170 1115 177 19 0 chr4 42987019 42987228 -159341119 + AluJb SINE Alu 79 291 -21 735 174 45 39 chr4 42987423 42987578 -159340769 + L1MA7 LINE L1 6132 6287 -4 692 132 116 33 chr4 42988698 42988819 -159339528 + FLAM_C SINE Alu 2 132 -1 271 224 37 65 chr4 42990683 42990790 -159337557 - MIR SINE MIR 0 262 159 1820 66 0 4 chr4 42991214 42991441 -159336906 + AluSc SINE Alu 84 309 0 2632 40 0 10 chr4 42991702 42992005 -159336342 + AluY SINE Alu 1 300 -11 2293 106 7 0 chr4 42993143 42993445 -159334902 - AluSg SINE Alu -6 304 1 34 24 0 0 chr4 42993795 42993836 -159334511 + AT_rich Low_complexity Low_complexity 1 41 0 2011 119 14 10 chr4 42994155 42994448 -159333899 + AluSx SINE Alu 1 294 -18 562 220 113 12 chr4 42994551 42994719 -159333628 - AluJb SINE Alu -14 298 114 308 180 20 0 chr4 42996081 42996131 -159332216 - Alu SINE Alu -249 51 1 1838 168 3 20 chr4 42996800 42997104 -159331243 + AluJb SINE Alu 1 299 -13 1472 174 71 18 chr4 42997248 42997530 -159330817 - AluJo SINE Alu -15 297 1 344 250 20 0 chr4 42997660 42997760 -159330587 - L1ME3 LINE L1 -211 5951 5850 1989 114 28 0 chr4 42998420 42998709 -159329638 - AluSx SINE Alu -15 297 1 1728 144 7 31 chr4 42998711 42999002 -159329345 - AluJo SINE Alu -3 309 26 320 250 36 36 chr4 42999069 42999181 -159329166 + MER112 DNA MER1_type 138 249 -11 1479 165 55 52 chr4 42999190 42999481 -159328866 + AluJo SINE Alu 3 294 -18 32 81 0 0 chr4 43000646 43000720 -159327627 + AT_rich Low_complexity Low_complexity 1 74 0 2243 105 7 10 chr4 43000950 43001255 -159327092 + AluSp SINE Alu 1 304 -9 341 95 16 0 chr4 43001255 43001318 -159327029 + (TA)n Simple_repeat Simple_repeat 2 65 0 2032 112 35 11 chr4 43001360 43001647 -159326700 + AluSx SINE Alu 12 305 -7 266 151 0 0 chr4 43003043 43003096 -159325251 + L1PA15 LINE L1 6112 6164 -1 186 304 36 0 chr4 43003780 43003836 -159324511 + L2 LINE L2 3182 3239 -33 2035 131 0 64 chr4 43004079 43004270 -159324077 - AluSq SINE Alu -6 307 144 2280 103 10 13 chr4 43004270 43004580 -159323767 - AluSx SINE Alu -3 309 1 2035 131 0 64 chr4 43004580 43004716 -159323631 - AluSq SINE Alu -169 144 1 1989 113 33 95 chr4 43004716 43004863 -159323484 - Tigger2a DNA MER2_type -2334 374 219 318 106 0 0 chr4 43004863 43004910 -159323437 + (CA)n Simple_repeat Simple_repeat 2 48 0 1989 113 33 95 chr4 43004910 43005161 -159323186 - Tigger2a DNA MER2_type -2489 219 1 300 271 35 0 chr4 43005407 43005492 -159322855 - L2 LINE L2 0 3272 3185 2449 72 7 3 chr4 43006735 43007041 -159321306 + AluY SINE Alu 1 307 -4 911 151 36 18 chr4 43007044 43007210 -159321137 + AluJo/FRAM SINE Alu 137 305 -7 657 216 0 0 chr4 43007217 43007333 -159321014 + FLAM_A SINE Alu 1 116 -17 1959 127 7 0 chr4 43007338 43007622 -159320725 - AluSx SINE Alu -2 310 25 1115 150 0 27 chr4 43007723 43007910 -159320437 - AluJo SINE Alu -47 265 84 320 0 25 0 chr4 43007930 43007970 -159320377 + (TTA)n Simple_repeat Simple_repeat 2 42 0 2195 87 0 7 chr4 43007971 43008246 -159320101 - AluSq SINE Alu -37 276 4 21 0 0 0 chr4 43008397 43008418 -159319929 + AT_rich Low_complexity Low_complexity 1 21 0 314 242 163 22 chr4 43008601 43008779 -159319568 + L1MC4a LINE L1 5972 6174 -1634 1013 78 0 28 chr4 43009089 43009230 -159319117 - AluSg/x SINE Alu 0 312 176 27 49 0 0 chr4 43009340 43009381 -159318966 + AT_rich Low_complexity Low_complexity 1 41 0 2380 105 0 0 chr4 43010710 43011016 -159317331 + AluSq SINE Alu 1 306 -7 1626 163 39 25 chr4 43011169 43011452 -159316895 + AluJb SINE Alu 6 292 -20 1966 149 7 0 chr4 43011685 43011974 -159316373 + AluSx SINE Alu 1 291 -21 1869 153 14 7 chr4 43012390 43012677 -159315670 + AluSx SINE Alu 2 290 -22 1786 142 24 27 chr4 43012696 43012991 -159315356 + AluSx SINE Alu 1 294 -18 34 0 0 0 chr4 43014400 43014434 -159313913 + AT_rich Low_complexity Low_complexity 1 34 0 22 56 0 0 chr4 43014697 43014733 -159313614 + AT_rich Low_complexity Low_complexity 1 36 0 1774 149 29 0 chr4 43014817 43015121 -159313226 - AluSx SINE Alu 0 312 1 1057 98 0 0 chr4 43015124 43015257 -159313090 - AluSq/x SINE Alu -179 133 1 857 236 110 16 chr4 43015277 43015523 -159312824 + MLT1J LTR MaLR 203 471 -40 803 106 0 0 chr4 43015919 43016023 -159312324 - AluY SINE Alu -16 295 192 329 316 96 3 chr4 43016181 43016373 -159311974 - MIR SINE MIR -10 252 45 2096 109 20 10 chr4 43016696 43016990 -159311357 - AluSx SINE Alu -15 297 1 2094 143 13 0 chr4 43017118 43017425 -159310922 + AluSx SINE Alu 1 311 -1 1848 109 18 21 chr4 43017944 43018260 -159310087 + AluSx SINE Alu 1 315 0 2116 112 3 45 chr4 43018428 43018742 -159309605 + AluJb SINE Alu 1 301 -11 2380 105 0 0 chr4 43020093 43020399 -159307948 + AluSq SINE Alu 1 306 -7 1649 159 39 25 chr4 43020552 43020835 -159307512 + AluJb SINE Alu 6 292 -20 1988 145 7 0 chr4 43021068 43021357 -159306990 + AluSx SINE Alu 1 291 -21 1772 164 18 7 chr4 43021777 43022063 -159306284 + AluSx SINE Alu 2 290 -22 2142 117 17 3 chr4 43022082 43022380 -159305967 + AluSx SINE Alu 1 302 -10 1896 124 44 0 chr4 43022439 43022714 -159305633 - AluSx SINE Alu -17 295 9 1807 136 31 7 chr4 43022913 43023200 -159305147 + AluSx SINE Alu 1 294 -18 30 0 0 0 chr4 43024612 43024642 -159303705 + AT_rich Low_complexity Low_complexity 1 30 0 22 56 0 0 chr4 43024905 43024941 -159303406 + AT_rich Low_complexity Low_complexity 1 36 0 1774 149 29 0 chr4 43025025 43025329 -159303018 - AluSx SINE Alu 0 312 1 1057 98 0 0 chr4 43025332 43025465 -159302882 - AluSq/x SINE Alu -180 133 1 835 235 109 20 chr4 43025485 43025732 -159302615 + MLT1J LTR MaLR 203 471 -40 2201 115 0 3 chr4 43026128 43026424 -159301923 - AluY SINE Alu -16 295 1 1769 165 7 29 chr4 43026424 43026733 -159301614 - AluJb SINE Alu -10 302 1 378 179 60 0 chr4 43026764 43026831 -159301516 + AluJ/FRAM SINE Alu 228 298 -4 2058 130 10 7 chr4 43026833 43027119 -159301228 + AluSq SINE Alu 1 290 -23 315 0 0 0 chr4 43027119 43027154 -159301193 + (CA)n Simple_repeat Simple_repeat 2 36 0 2058 130 10 7 chr4 43027154 43027168 -159301179 + AluSq SINE Alu 290 302 -11 1579 150 24 12 chr4 43027237 43027490 -159300857 - AluJb SINE Alu -22 290 35 1323 218 127 19 chr4 43027512 43027991 -159300356 + LTR61 LTR ERV1 16 595 0 2145 153 30 14 chr4 43027991 43028358 -159299989 + HERV3 LTR ERV1 2 374 -8052 587 176 0 0 chr4 43028377 43028468 -159299879 + HERV3 LTR ERV1 894 984 -7442 * 10662 167 2 2 chr4 43028456 43030081 -159298266 + HERV3 LTR ERV1 1332 2957 -5469 * 11972 154 6 16 chr4 43030071 43030355 -159297992 + HERV3 LTR ERV1 4258 4543 -3883 2447 58 3 0 chr4 43030355 43030648 -159297699 + AluY SINE Alu 1 294 -17 11972 154 6 16 chr4 43030648 43032283 -159296064 + HERV3 LTR ERV1 4543 6221 -2205 2440 71 0 0 chr4 43032283 43032578 -159295769 + AluY SINE Alu 1 295 -16 1010 251 5 0 chr4 43032581 43032780 -159295567 + HERV3 LTR ERV1 6381 6580 -1846 * 1534 222 46 10 chr4 43032779 43033085 -159295262 + HERV3 LTR ERV1 8110 8426 0 334 302 0 54 chr4 43033109 43033238 -159295109 + LTR4 LTR ERV1 16 137 -459 485 120 0 6 chr4 43033273 43033354 -159294993 - L1MB4 LINE L1 -36 6138 6066 2301 90 10 0 chr4 43033835 43034124 -159294223 - AluSq SINE Alu -21 292 1 1913 128 7 20 chr4 43034377 43034540 -159293807 - AluSx SINE Alu -16 296 137 2095 113 20 0 chr4 43034540 43034833 -159293514 - AluSq SINE Alu -14 299 1 1913 128 7 20 chr4 43034833 43034967 -159293380 - AluSx SINE Alu -175 137 3 1211 124 11 0 chr4 43035040 43035217 -159293130 - AluSg/x SINE Alu 0 312 134 2238 121 0 0 chr4 43035217 43035522 -159292825 - AluSq SINE Alu -8 305 1 879 261 128 47 chr4 43035608 43036114 -159292233 - MLT1L LTR MaLR -61 554 8 614 276 25 5 chr4 43036117 43036316 -159292031 - MIR SINE MIR -8 254 52 460 179 0 12 chr4 43036333 43036417 -159291930 + L1MC4 LINE L1 7176 7258 -784 2174 92 3 7 chr4 43036420 43036736 -159291611 - AluSx SINE Alu 0 315 1 1422 181 127 0 chr4 43036738 43036997 -159291350 - AluJb SINE Alu -20 292 1 2269 220 46 15 chr4 43037030 43037484 -159290863 + MLT1F LTR MaLR 6 473 -69 649 114 57 171 chr4 43037486 43037532 -159290815 + L1MC4 LINE L1 7836 7886 -156 2076 119 61 3 chr4 43037532 43037825 -159290522 - AluSx SINE Alu -2 310 1 649 114 57 171 chr4 43037825 43038006 -159290341 + L1MC4 LINE L1 7886 8037 -5 301 262 87 56 chr4 43038026 43038152 -159290195 + Charlie8 DNA MER1_type 11 140 -2277 1237 108 30 0 chr4 43038153 43038319 -159290028 + AluSq SINE Alu 126 296 -17 277 222 32 0 chr4 43038557 43038620 -159289727 + MIR SINE MIR 56 120 -142 289 304 74 40 chr4 43038869 43039017 -159289330 - MIR SINE MIR -20 242 90 2492 80 3 0 chr4 43039123 43039425 -159288922 - AluSp SINE Alu -10 303 1 32 0 0 0 chr4 43039536 43039568 -159288779 + AT_rich Low_complexity Low_complexity 1 32 0 1991 141 7 3 chr4 43039785 43040082 -159288265 - AluJb SINE Alu -14 298 1 2079 70 48 7 chr4 43040164 43040464 -159287883 - AluSq SINE Alu 0 312 2 687 146 23 8 chr4 43040633 43040763 -159287584 + AluSg/x SINE Alu 177 308 -1 581 160 30 0 chr4 43041098 43041198 -159287149 - MER58 DNA MER1_type 0 2420 2318 643 129 29 107 chr4 43041216 43041356 -159286991 - FLAM_C SINE Alu -12 131 3 368 148 171 45 chr4 43041364 43041452 -159286895 - MER58 DNA MER1_type -110 105 7 2385 90 7 0 chr4 43042595 43042894 -159285453 + AluY SINE Alu 1 301 -10 2266 109 10 0 chr4 43043495 43043797 -159284550 - AluSx SINE Alu -4 308 4 2252 95 0 10 chr4 43043816 43044112 -159284235 - AluSg SINE Alu -17 293 1 2531 51 3 0 chr4 43044123 43044419 -159283928 - AluY SINE Alu -14 297 1 331 287 208 5 chr4 43044419 43044621 -159283726 + MIR SINE MIR 8 250 -12 1815 168 3 13 chr4 43045598 43045760 -159282587 - AluSx SINE Alu -17 295 136 2360 103 0 0 chr4 43045760 43046060 -159282287 - AluSg SINE Alu -9 301 2 1815 168 3 13 chr4 43046060 43046195 -159282152 - AluSx SINE Alu -176 136 1 357 156 47 0 chr4 43046614 43046678 -159281669 + MLT2C1 LTR ERVL 1 67 -330 2538 75 0 0 chr4 43046873 43047181 -159281166 + AluY SINE Alu 1 308 -3 1047 193 176 35 chr4 43047411 43047741 -159280606 - Tigger7 DNA MER2_type 0 2491 2 28 29 0 0 chr4 43048336 43048371 -159279976 + AT_rich Low_complexity Low_complexity 1 35 0 1906 137 13 10 chr4 43048796 43049095 -159279252 + AluJb SINE Alu 1 300 -12 721 184 16 0 chr4 43049725 43049850 -159278497 + FLAM_A SINE Alu 1 127 -6 447 246 164 0 chr4 43049970 43050104 -159278243 + MIR SINE MIR 93 248 -14 841 125 0 0 chr4 43050243 43050355 -159277992 - AluSx SINE Alu -23 287 176 523 191 0 11 chr4 43050355 43050449 -159277898 - AluSx SINE Alu -218 94 2 1463 181 56 36 chr4 43050513 43050816 -159277531 + AluJo SINE Alu 1 309 -3 1819 164 0 14 chr4 43051094 43051380 -159276967 - AluJo SINE Alu -30 282 1 1783 161 0 33 chr4 43051826 43052131 -159276216 - AluJb SINE Alu -17 295 1 1196 193 14 0 chr4 43052132 43052350 -159275997 - MER58A DNA MER1_type -3 221 1 406 252 145 13 chr4 43052406 43052565 -159275782 + MIR SINE MIR 70 249 -13 21 36 0 0 chr4 43053840 43053868 -159274479 + AT_rich Low_complexity Low_complexity 1 28 0 2244 108 3 7 chr4 43054110 43054407 -159273940 - AluSx SINE Alu -16 296 1 2288 92 24 0 chr4 43054555 43054847 -159273500 - AluSx SINE Alu -13 299 1 188 234 78 0 chr4 43054925 43054989 -159273358 + MIR SINE MIR 84 152 -110 1816 163 52 0 chr4 43055664 43055952 -159272395 - AluJb SINE Alu -9 303 1 2493 85 0 0 chr4 43056373 43056679 -159271668 - AluSc SINE Alu -3 306 1 1684 155 14 41 chr4 43057225 43057515 -159270832 - AluJb SINE Alu -30 282 1 219 36 0 0 chr4 43057517 43057545 -159270802 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 2058 132 4 0 chr4 43057545 43057826 -159270521 - AluSx SINE Alu -30 282 1 729 221 19 0 chr4 43057828 43057982 -159270365 - AluJb SINE Alu -19 293 137 27 62 0 0 chr4 43058265 43058313 -159270034 + AT_rich Low_complexity Low_complexity 1 48 0 472 217 89 38 chr4 43058390 43058547 -159269800 + L1MC5 LINE L1 7258 7422 -539 2082 127 7 0 chr4 43058552 43058844 -159269503 - AluSx SINE Alu -18 294 1 1395 134 0 14 chr4 43058926 43059142 -159269205 + AluJb SINE Alu 84 296 -16 373 251 246 0 chr4 43059142 43059309 -159269038 + L1MC5 LINE L1 7706 7913 -48 2389 72 3 23 chr4 43060048 43060353 -159267994 - AluSx SINE Alu -13 299 1 950 241 60 44 chr4 43060487 43060763 -159267584 - L1ME3A LINE L1 -114 6056 5773 2160 132 0 6 chr4 43060763 43061074 -159267273 - AluSx SINE Alu -3 309 1 950 241 60 44 chr4 43061074 43061116 -159267231 - L1ME3A LINE L1 -397 5773 5733 356 172 94 0 chr4 43061119 43061183 -159267164 - L1ME3A LINE L1 -485 5685 5616 1510 160 119 11 chr4 43061191 43061460 -159266887 - AluJb SINE Alu -14 298 1 186 43 0 0 chr4 43061463 43061486 -159266861 + (A)n Simple_repeat Simple_repeat 1 23 0 727 128 9 0 chr4 43061492 43061601 -159266746 - FLAM_C SINE Alu -32 111 2 488 245 98 7 chr4 43061604 43061747 -159266600 - L1ME3A LINE L1 -563 5607 5452 2131 142 0 0 chr4 43061758 43062060 -159266287 - AluSx SINE Alu -10 302 1 738 185 0 22 chr4 43062063 43062198 -159266149 - FLAM_A SINE Alu -1 132 1 2244 96 0 3 chr4 43062396 43062678 -159265669 - AluSx SINE Alu -26 286 6 1560 180 24 3 chr4 43062900 43063194 -159265153 + AluSq SINE Alu 1 300 -13 42 36 0 0 chr4 43063500 43063556 -159264791 + AT_rich Low_complexity Low_complexity 1 56 0 21 0 0 0 chr4 43063567 43063588 -159264759 + AT_rich Low_complexity Low_complexity 1 21 0 2302 99 13 0 chr4 43063629 43063933 -159264414 + AluSx SINE Alu 1 308 -4 214 257 0 54 chr4 43065194 43065268 -159263079 - MIR3 SINE MIR -35 173 104 2231 97 10 7 chr4 43065602 43065891 -159262456 - AluSc SINE Alu -12 297 8 1794 150 17 17 chr4 43065894 43066188 -159262159 - AluSx SINE Alu -18 294 1 254 237 195 38 chr4 43066348 43066359 -159261988 - L1MC4a LINE L1 -1636 6172 6164 2243 97 7 7 chr4 43066359 43066659 -159261688 + AluSp SINE Alu 1 300 -13 254 237 195 38 chr4 43066659 43066909 -159261438 - L1MC4a LINE L1 -1644 6164 5870 216 253 177 13 chr4 43067150 43067229 -159261118 + L2 LINE L2 3222 3313 0 1870 154 3 23 chr4 43067339 43067644 -159260703 - AluSx SINE Alu -13 299 1 2374 92 7 0 chr4 43068026 43068329 -159260018 - AluSx SINE Alu -7 305 1 2618 55 0 10 chr4 43068332 43068644 -159259703 - AluY SINE Alu -2 309 1 2262 98 0 0 chr4 43071551 43071838 -159256509 - AluSq SINE Alu -26 287 1 346 292 70 76 chr4 43071874 43071966 -159256381 - L2 LINE L2 -1 3271 3179 1607 120 113 11 chr4 43071966 43072240 -159256107 + AluSg SINE Alu 1 302 -8 346 292 70 76 chr4 43072240 43072318 -159256029 - L2 LINE L2 -93 3179 3102 1831 193 134 7 chr4 43072547 43073009 -159255338 + Charlie1b DNA MER1_type 1 521 -2 2233 134 0 6 chr4 43073182 43073496 -159254851 - AluSx SINE Alu 0 312 1 6327 105 14 2 chr4 43073520 43074384 -159253963 - THE1B-int LTR MaLR -706 874 1 2308 122 44 20 chr4 43074384 43074727 -159253620 - THE1B LTR MaLR 0 364 14 736 183 28 0 chr4 43074768 43074910 -159253437 - AluJb SINE Alu -3 309 164 770 96 128 4 chr4 43074910 43075050 -159253297 + THE1B LTR MaLR 4 182 -182 1037 124 19 12 chr4 43075052 43075213 -159253134 + AluSq SINE Alu 137 298 -15 1026 120 47 58 chr4 43075213 43075404 -159252943 + THE1B LTR MaLR 176 364 0 11138 75 1 119 chr4 43075404 43075774 -159252573 + THE1B-int LTR MaLR 1 413 -1167 839 164 127 11 chr4 43075774 43075963 -159252384 - AluSq SINE Alu -13 300 90 11138 75 1 119 chr4 43075963 43076030 -159252317 + THE1B-int LTR MaLR 413 486 -1094 2210 117 3 0 chr4 43076030 43076330 -159252017 + AluSg SINE Alu 1 301 -9 11138 75 1 119 chr4 43076330 43077495 -159250852 + THE1B-int LTR MaLR 486 1580 0 1743 118 103 63 chr4 43077496 43077589 -159250758 + THE1B LTR MaLR 2 90 -274 2226 106 13 0 chr4 43077589 43077891 -159250456 + AluSq SINE Alu 1 306 -7 1743 118 103 63 chr4 43077891 43078076 -159250271 + THE1B LTR MaLR 90 299 -65 2462 73 0 13 chr4 43078076 43078390 -159249957 - AluY SINE Alu 0 311 2 1743 118 103 63 chr4 43078390 43078459 -159249888 + THE1B LTR MaLR 299 364 0 570 248 116 10 chr4 43078459 43078657 -159249690 + Charlie2 DNA MER1_type 253 471 -2391 330 234 117 29 chr4 43079132 43079269 -159249078 + MLT1J LTR MaLR 312 460 -51 866 299 148 28 chr4 43079313 43079932 -159248415 + L2 LINE L2 2357 3050 -263 733 233 25 117 chr4 43079936 43080262 -159248085 + AluJo SINE Alu 3 298 -4 2174 91 4 0 chr4 43080274 43080548 -159247799 - AluSg SINE Alu -25 285 11 1796 172 3 7 chr4 43080648 43080945 -159247402 - AluJb SINE Alu -16 296 1 1940 130 11 28 chr4 43080948 43081262 -159247085 - AluSx SINE Alu 0 313 5 21 0 0 0 chr4 43081269 43081290 -159247057 + AT_rich Low_complexity Low_complexity 1 21 0 869 142 0 0 chr4 43081507 43081634 -159246713 - FLAM_C SINE Alu -6 127 1 2826 129 0 14 chr4 43082074 43082509 -159245838 - LTR3 LTR ERVK 0 429 1 9167 229 10 3 chr4 43082512 43084356 -159243991 - HERVK3 LTR ERVK -2 7241 5384 7890 146 5 2 chr4 43084357 43085593 -159242754 - HERVK3 LTR ERVK -2054 5189 3950 6366 138 21 4 chr4 43085591 43086590 -159241757 - HERVK3 LTR ERVK -5757 1486 471 * 721 111 238 47 chr4 43086578 43086750 -159241597 - HERVK3 LTR ERVK -6971 272 68 * 2737 133 12 12 chr4 43086767 43087196 -159241151 - LTR3 LTR ERVK 0 429 1 1725 145 41 0 chr4 43087197 43087466 -159240881 + AluJb SINE Alu 14 293 -19 1252 175 16 29 chr4 43088039 43088285 -159240062 - AluJo SINE Alu -21 291 49 2434 78 3 7 chr4 43088305 43088614 -159239733 + AluSc SINE Alu 1 308 -1 2371 97 0 3 chr4 43088657 43088966 -159239381 + AluSg SINE Alu 1 308 -2 2333 100 3 0 chr4 43090733 43091032 -159237315 - AluSp SINE Alu -13 300 1 231 36 0 0 chr4 43091084 43091112 -159237235 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 903 131 15 0 chr4 43091189 43091319 -159237028 - FLAM_C SINE Alu -11 132 1 2107 126 7 0 chr4 43091740 43092041 -159236306 + AluSq SINE Alu 1 303 -10 1918 125 39 0 chr4 43092120 43092401 -159235946 - AluSx SINE Alu -20 292 1 2233 116 3 0 chr4 43093106 43093409 -159234938 - AluSx SINE Alu -8 304 1 22 0 0 0 chr4 43093621 43093643 -159234704 + AT_rich Low_complexity Low_complexity 1 22 0 2254 106 7 7 chr4 43093734 43094037 -159234310 - AluSx SINE Alu -9 303 1 40 59 0 0 chr4 43095000 43095068 -159233279 + AT_rich Low_complexity Low_complexity 1 68 0 263 255 128 28 chr4 43095508 43095649 -159232698 + MLT1K LTR MaLR 418 572 -16 2314 99 3 7 chr4 43095885 43096187 -159232160 - AluSx SINE Alu -11 301 1 2355 97 0 0 chr4 43096420 43096718 -159231629 - AluSq SINE Alu -15 298 1 878 128 15 0 chr4 43097015 43097148 -159231199 + AluSq/x SINE Alu 1 135 -178 2095 142 0 0 chr4 43097148 43097450 -159230897 + AluSx SINE Alu 1 302 -10 201 74 0 0 chr4 43097471 43097498 -159230849 + (T)n Simple_repeat Simple_repeat 1 27 0 21 0 0 0 chr4 43097518 43097539 -159230808 + AT_rich Low_complexity Low_complexity 1 21 0 543 148 28 9 chr4 43097541 43097649 -159230698 - L1MA8 LINE L1 -2 6289 6180 2473 88 0 0 chr4 43097653 43097958 -159230389 - AluSq SINE Alu -8 305 1 2019 132 3 3 chr4 43098059 43098355 -159229992 - AluSx SINE Alu -16 296 1 1133 149 55 10 chr4 43098798 43098999 -159229348 + AluJo SINE Alu 87 296 -16 1164 166 35 44 chr4 43099607 43099836 -159228511 - AluJo SINE Alu -9 303 77 2255 105 10 0 chr4 43099838 43100134 -159228213 - AluSx SINE Alu -13 299 1 325 164 27 55 chr4 43100134 43100207 -159228140 - AluJo SINE Alu -155 147 77 250 276 0 0 chr4 43100916 43100974 -159227373 + L2 LINE L2 3251 3308 -5 846 137 0 0 chr4 43101028 43101145 -159227202 + AluJb SINE Alu 1 117 -195 226 277 20 50 chr4 43101145 43101246 -159227101 + MER61E LTR ERV1 2 99 -470 505 138 25 0 chr4 43101284 43101364 -159226983 + LTR25 LTR ERV1 282 363 -431 2239 106 10 3 chr4 43101528 43101830 -159226517 - AluSg SINE Alu -6 304 1 1072 160 73 18 chr4 43101831 43102050 -159226297 + MER61E LTR ERV1 339 569 0 1112 171 0 0 chr4 43102054 43102241 -159226106 + AluSg/x SINE Alu 124 310 0 1954 142 0 16 chr4 43102657 43102960 -159225387 + AluJb SINE Alu 1 298 -14 628 305 93 21 chr4 43103004 43103338 -159225009 + L2 LINE L2 2344 2701 -613 1443 150 35 0 chr4 43103361 43103588 -159224759 - MER46A DNA MER2_type 0 236 2 23 0 0 0 chr4 43103592 43103615 -159224732 + AT_rich Low_complexity Low_complexity 1 23 0 698 136 0 19 chr4 43103621 43103724 -159224623 + AluJ/FLAM SINE Alu 2 102 -210 470 215 0 43 chr4 43103722 43103815 -159224532 - AluJ/FLAM SINE Alu -222 90 2 * 1824 135 7 51 chr4 43103940 43104236 -159224111 + AluSx SINE Alu 2 284 -28 1782 157 0 11 chr4 43104393 43104680 -159223667 + AluJo SINE Alu 1 284 -28 252 0 0 0 chr4 43104684 43104712 -159223635 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 1708 171 0 57 chr4 43104792 43105108 -159223239 - AluJb SINE Alu -14 298 1 825 184 0 0 chr4 43105108 43105244 -159223103 - AluJo SINE Alu -175 137 2 2354 92 0 3 chr4 43105359 43105663 -159222684 - AluSq SINE Alu -10 303 1 376 279 19 65 chr4 43105687 43105841 -159222506 + MER5A DNA MER1_type 21 167 -22 233 163 20 0 chr4 43106169 43106218 -159222129 + CT-rich Low_complexity Low_complexity 2 51 0 823 139 0 0 chr4 43106218 43106347 -159222000 - AluSc SINE Alu 0 309 181 1104 152 157 5 chr4 43106661 43106865 -159221482 + MER46A DNA MER2_type 1 235 -1 1591 241 194 74 chr4 43106999 43107231 -159221116 - L2 LINE L2 -244 3069 2866 1864 170 0 20 chr4 43107231 43107537 -159220810 + AluJb SINE Alu 1 300 -12 1591 241 194 74 chr4 43107537 43107634 -159220713 - L2 LINE L2 -447 2866 2782 1773 157 25 0 chr4 43107634 43107920 -159220427 - AluJb SINE Alu -17 295 3 1591 241 194 74 chr4 43107920 43108024 -159220323 - L2 LINE L2 -531 2782 2692 2474 125 28 19 chr4 43108024 43108385 -159219962 + THE1B LTR MaLR 1 364 0 1591 241 194 74 chr4 43108385 43108834 -159219513 - L2 LINE L2 -621 2692 2076 2264 120 0 13 chr4 43108852 43108988 -159219359 + AluSx SINE Alu 1 137 -175 2407 93 0 0 chr4 43108988 43109288 -159219059 + AluSc SINE Alu 1 300 -9 2264 120 0 13 chr4 43109288 43109467 -159218880 + AluSx SINE Alu 137 312 0 1914 149 10 13 chr4 43109623 43109758 -159218589 + AluJb SINE Alu 1 135 -177 2457 80 7 0 chr4 43109758 43110059 -159218288 + AluSq SINE Alu 1 303 -10 1914 149 10 13 chr4 43110059 43110232 -159218115 + AluJb SINE Alu 135 308 -4 2298 107 0 3 chr4 43110297 43110597 -159217750 + AluSx SINE Alu 1 299 -13 23 0 0 0 chr4 43110931 43110954 -159217393 + AT_rich Low_complexity Low_complexity 1 23 0 370 225 28 0 chr4 43111816 43111887 -159216460 + MER34C LTR ERV1 23 95 -490 1224 136 0 0 chr4 43111891 43112068 -159216279 + AluSg/x SINE Alu 134 310 0 1156 239 54 36 chr4 43112070 43112456 -159215891 + MER34B LTR ERV1 39 493 -72 2152 116 13 0 chr4 43112456 43112759 -159215588 - AluSx SINE Alu -4 308 2 1156 239 54 36 chr4 43112759 43112834 -159215513 + MER34B LTR ERV1 493 565 0 327 261 35 17 chr4 43112841 43112956 -159215391 + L1ME LINE L1 5689 5805 -316 1113 141 0 0 chr4 43112967 43113123 -159215224 - FRAM SINE Alu -21 155 1 1768 152 3 40 chr4 43113597 43113919 -159214428 + AluJb SINE Alu 1 310 -2 1917 151 0 10 chr4 43114101 43114406 -159213941 - AluJb SINE Alu -10 302 1 287 75 25 0 chr4 43114534 43114574 -159213773 - Alu SINE Alu -262 41 1 2336 96 3 0 chr4 43114786 43115088 -159213259 + AluSp SINE Alu 1 303 -10 1699 107 3 136 chr4 43115095 43115449 -159212898 + AluJb SINE Alu 2 308 -4 31 0 0 0 chr4 43116011 43116042 -159212305 + AT_rich Low_complexity Low_complexity 1 31 0 2329 101 0 16 chr4 43116132 43116439 -159211908 + AluSg SINE Alu 1 302 -8 1472 192 23 20 chr4 43116477 43116779 -159211568 + AluJb SINE Alu 1 303 -9 2248 114 3 3 chr4 43117090 43117397 -159210950 - AluSx SINE Alu -5 307 1 1925 170 0 3 chr4 43117519 43117831 -159210516 - AluJo SINE Alu -1 311 1 2204 98 14 3 chr4 43117949 43118244 -159210103 - AluSx SINE Alu -14 298 1 868 196 6 12 chr4 43118645 43118808 -159209539 + AluJb SINE Alu 136 297 -15 2170 125 3 0 chr4 43119231 43119526 -159208821 + AluSx SINE Alu 1 296 -16 2394 85 3 16 chr4 43119946 43120262 -159208085 + AluSx SINE Alu 1 312 0 372 119 0 0 chr4 43120262 43120321 -159208026 + (TA)n Simple_repeat Simple_repeat 1 59 0 192 319 59 76 chr4 43120465 43120584 -159207763 + L2 LINE L2 2870 2986 -327 2194 128 0 3 chr4 43120769 43121067 -159207280 + AluSx SINE Alu 1 297 -15 1883 144 7 33 chr4 43121070 43121376 -159206971 + AluJo SINE Alu 1 298 -14 765 120 34 34 chr4 43121464 43121581 -159206766 + FLAM_C SINE Alu 2 118 -25 25 0 0 0 chr4 43121585 43121610 -159206737 + AT_rich Low_complexity Low_complexity 1 25 0 1537 126 157 8 chr4 43121622 43121883 -159206464 + AluJb SINE Alu 3 302 -10 185 0 0 39 chr4 43121918 43121944 -159206403 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 978 138 0 13 chr4 43121959 43122111 -159206236 - AluJb SINE Alu -162 150 1 305 322 120 11 chr4 43122243 43122426 -159205921 - MIR SINE MIR 0 262 60 184 326 0 0 chr4 43122632 43122678 -159205669 + L2 LINE L2 3005 3050 -263 908 217 31 125 chr4 43122682 43123009 -159205338 + AluSq SINE Alu 3 298 -5 1953 150 10 0 chr4 43123115 43123421 -159204926 - AluSq SINE Alu -4 309 1 1798 152 3 40 chr4 43123422 43123725 -159204622 - AluJb SINE Alu -18 294 3 276 220 0 0 chr4 43123927 43123977 -159204370 - L2 LINE L2 -48 3265 3216 2356 119 0 0 chr4 43124529 43124863 -159203484 + AluSx SINE Alu 1 334 0 527 295 33 37 chr4 43124945 43125189 -159203158 + AluJb SINE Alu 70 312 0 21 0 0 0 chr4 43125229 43125250 -159203097 + AT_rich Low_complexity Low_complexity 1 21 0 441 0 0 0 chr4 43125515 43125564 -159202783 + (A)n Simple_repeat Simple_repeat 1 49 0 1900 183 0 0 chr4 43125572 43125884 -159202463 + AluJo SINE Alu 1 312 0 2354 78 0 0 chr4 43126340 43126655 -159201692 - AluSp SINE Alu 0 315 1 311 238 0 0 chr4 43126911 43126974 -159201373 - MLT-int LTR MaLR -993 742 680 3151 189 38 31 chr4 43127116 43127821 -159200526 - MLT1A2-int LTR MaLR -656 715 6 1616 214 55 28 chr4 43127826 43128190 -159200157 - MLT1A2 LTR MaLR 0 374 1 2477 62 3 3 chr4 43128273 43128578 -159199769 + AluY SINE Alu 1 305 -6 235 221 156 0 chr4 43128597 43128674 -159199673 + MLT1G3 LTR MaLR 11 99 -496 629 241 130 6 chr4 43128674 43128836 -159199511 + FRAM SINE Alu 1 176 0 925 273 106 16 chr4 43128855 43129299 -159199048 + MLT1G3 LTR MaLR 25 595 0 862 139 0 29 chr4 43129316 43129453 -159198894 + FLAM_C SINE Alu 1 133 0 40 37 0 0 chr4 43129860 43129914 -159198433 + AT_rich Low_complexity Low_complexity 1 54 0 2094 146 0 0 chr4 43130148 43130443 -159197904 - AluSx SINE Alu -17 295 1 1351 87 12 6 chr4 43130817 43130989 -159197358 + AluSg SINE Alu 1 173 -137 2278 116 0 0 chr4 43131223 43131526 -159196821 + AluSx SINE Alu 1 303 -9 2038 110 3 13 chr4 43131751 43132052 -159196295 + AluY SINE Alu 1 298 -13 1213 142 0 0 chr4 43132292 43132461 -159195886 - AluSx SINE Alu -143 169 1 335 236 0 45 chr4 43133197 43133286 -159195061 + L1MEc LINE L1 374 458 -6263 296 104 0 0 chr4 43133292 43133340 -159195007 - Alu SINE Alu -3 297 250 384 200 42 152 chr4 43133472 43133557 -159194790 - Charlie1a DNA MER1_type -2606 155 95 2214 116 0 0 chr4 43133557 43133858 -159194489 + AluY SINE Alu 1 301 -10 384 200 42 152 chr4 43133858 43133937 -159194410 - Charlie1a DNA MER1_type -2666 95 9 421 205 115 33 chr4 43133937 43134059 -159194288 + L2 LINE L2 3174 3305 -8 250 225 92 50 chr4 43134233 43134353 -159193994 - L1MC4a LINE L1 -1785 6023 5899 1035 192 10 10 chr4 43134416 43134614 -159193733 - AluJo SINE Alu -7 305 108 1305 91 0 34 chr4 43134622 43134797 -159193550 + AluSc SINE Alu 1 169 -140 1884 184 7 0 chr4 43134994 43135299 -159193048 + AluJo SINE Alu 1 307 -5 1584 136 78 61 chr4 43135315 43135609 -159192738 + AluJo SINE Alu 1 299 -13 518 209 28 11 chr4 43135770 43135947 -159192400 + (TA)n Simple_repeat Simple_repeat 1 180 0 745 152 29 0 chr4 43135982 43136153 -159192194 + (TA)n Simple_repeat Simple_repeat 1 176 0 1025 85 0 0 chr4 43136153 43136283 -159192064 - AluSg/x SINE Alu -20 292 163 4967 153 64 73 chr4 43136426 43136717 -159191630 + L1MEc LINE L1 1040 1332 -5208 1923 132 21 7 chr4 43136717 43137035 -159191312 + AluSx SINE Alu 1 312 0 4967 153 64 73 chr4 43137035 43137661 -159190686 + L1MEc LINE L1 1332 2013 -4527 531 43 0 14 chr4 43137661 43137730 -159190617 + AluSp/q SINE Alu 229 296 -17 4967 153 64 73 chr4 43137730 43137983 -159190364 + L1MEc LINE L1 2013 2267 -4273 628 189 78 5 chr4 43138002 43138205 -159190142 + L1MD2 LINE L1 6077 6347 -12 1856 140 8 0 chr4 43138205 43138470 -159189877 + AluSx SINE Alu 24 290 -22 628 189 78 5 chr4 43138470 43138482 -159189865 + L1MD2 LINE L1 6347 6357 -2 1673 95 14 5 chr4 43138495 43138716 -159189631 + AluSg SINE Alu 1 223 -87 222 118 0 0 chr4 43138826 43138860 -159189487 + (A)n Simple_repeat Simple_repeat 1 34 0 2102 111 38 0 chr4 43139050 43139338 -159189009 - AluSx SINE Alu -13 299 1 1899 124 48 96 chr4 43139542 43139896 -159188451 + MER1B DNA MER1_type 1 337 0 272 198 148 15 chr4 43140021 43140106 -159188241 - MIR SINE MIR -73 135 42 2264 136 19 11 chr4 43140538 43140898 -159187449 - MLT1A1 LTR MaLR 0 365 3 223 303 76 50 chr4 43141063 43141182 -159187165 + MIR SINE MIR 92 213 -49 869 134 0 8 chr4 43141317 43141444 -159186903 + MER30 DNA MER1_type 105 230 0 398 111 0 97 chr4 43141445 43141517 -159186830 - L1MDa LINE L1 -6182 358 294 2049 107 42 3 chr4 43141517 43141806 -159186541 + AluJo SINE Alu 1 300 -12 1421 211 3 17 chr4 43141828 43142117 -159186230 - L1MDa LINE L1 -6239 301 17 2154 104 47 0 chr4 43142137 43142435 -159185912 - AluSq SINE Alu -1 312 1 763 268 33 0 chr4 43142435 43142618 -159185729 - MIR SINE MIR -62 200 12 270 279 93 39 chr4 43142710 43142839 -159185508 - L2 LINE L2 -14 3299 3164 1172 183 0 23 chr4 43142948 43143167 -159185180 - AluJo SINE Alu -12 300 87 287 326 28 42 chr4 43143169 43143313 -159185034 - L2 LINE L2 -240 3032 2891 2218 104 6 31 chr4 43143504 43143822 -159184525 - AluSx SINE Alu -2 310 1 191 88 29 0 chr4 43144013 43144047 -159184300 + (GAAAA)n Simple_repeat Simple_repeat 4 38 0 350 293 140 39 chr4 43144084 43144313 -159184034 + MIR SINE MIR 8 259 -3 502 286 83 46 chr4 43144466 43144707 -159183640 - MLT1L LTR MaLR -361 254 5 299 337 151 29 chr4 43144717 43144968 -159183379 + L2 LINE L2 2335 2619 -695 634 240 89 0 chr4 43144968 43145114 -159183233 - MER5A DNA MER1_type 0 189 31 288 130 0 37 chr4 43145355 43145409 -159182938 - L1MB7 LINE L1 -10 6174 6123 2762 127 51 45 chr4 43145443 43145514 -159182833 - L1MB8 LINE L1 -1 6177 6108 2231 123 0 0 chr4 43145514 43145816 -159182531 + AluSx SINE Alu 1 302 -10 2762 127 51 45 chr4 43145816 43146233 -159182114 - L1MB8 LINE L1 -70 6108 5686 1061 179 24 63 chr4 43146268 43146520 -159181827 - AluJo SINE Alu -70 242 1 245 178 0 22 chr4 43146532 43146577 -159181770 + Alu SINE Alu 124 167 -135 2118 81 0 15 chr4 43147552 43147825 -159180522 + AluSg1 SINE Alu 39 307 -2 322 113 42 69 chr4 43148295 43148879 -159179468 + (TATAA)n Simple_repeat Simple_repeat 1 568 0 410 179 24 0 chr4 43148882 43149050 -159179297 + (TA)n Simple_repeat Simple_repeat 1 172 0 858 151 18 48 chr4 43149050 43149216 -159179131 - FRAM SINE Alu -17 159 1 881 152 15 15 chr4 43149233 43149365 -159178982 + FLAM_C SINE Alu 2 133 0 2324 53 7 23 chr4 43149375 43149678 -159178669 + AluY SINE Alu 5 302 -9 1354 40 0 0 chr4 43149793 43149945 -159178402 - AluY SINE Alu -159 152 1 1650 192 21 14 chr4 43149945 43150236 -159178111 - AluJo SINE Alu -13 299 7 824 170 69 0 chr4 43150288 43150447 -159177900 + FRAM SINE Alu 1 166 -10 1467 207 135 34 chr4 43150461 43150906 -159177441 + MLT1F LTR MaLR 3 492 -50 2248 97 13 3 chr4 43150931 43151241 -159177106 - AluSp SINE Alu 0 313 1 2256 87 24 0 chr4 43151242 43151531 -159176816 - AluSx SINE Alu -16 296 1 207 296 0 0 chr4 43151611 43151665 -159176682 + L2 LINE L2 3255 3308 -5 345 247 59 41 chr4 43151728 43151898 -159176449 + L1ME4a LINE L1 5256 5428 -2380 21 36 0 0 chr4 43151928 43151956 -159176391 + AT_rich Low_complexity Low_complexity 1 28 0 186 43 0 0 chr4 43152092 43152115 -159176232 + (A)n Simple_repeat Simple_repeat 1 23 0 413 250 8 45 chr4 43152115 43152232 -159176115 + L1MC5 LINE L1 7769 7882 -79 2226 108 3 3 chr4 43152232 43152528 -159175819 - AluSq SINE Alu -17 296 1 413 250 8 45 chr4 43152528 43152542 -159175805 + L1MC5 LINE L1 7882 7895 -66 960 118 0 15 chr4 43153006 43153141 -159175206 - FLAM_C SINE Alu 0 133 1 671 145 17 8 chr4 43153144 43153261 -159175086 + L1MD3 LINE L1 7878 7995 0 1895 123 31 14 chr4 43153304 43153596 -159174751 + L1MC1 LINE L1 6020 6316 -17 272 264 151 0 chr4 43153639 43153745 -159174602 + L1MC5 LINE L1 7810 7931 -30 2105 131 3 0 chr4 43154035 43154341 -159174006 - AluSx SINE Alu -5 307 1 258 105 0 0 chr4 43154548 43154586 -159173761 + (A)n Simple_repeat Simple_repeat 1 38 0 680 163 32 16 chr4 43155349 43155472 -159172875 - FLAM_C SINE Alu -6 127 3 461 83 17 0 chr4 43155852 43155912 -159172435 + U7 snRNA snRNA 2 62 -1 777 263 145 34 chr4 43156265 43156522 -159171825 + L1ME4a LINE L1 5525 5752 -369 1694 167 43 7 chr4 43156522 43156821 -159171526 - AluJb SINE Alu -2 310 1 777 263 145 34 chr4 43156821 43156913 -159171434 + L1ME4a LINE L1 5752 5832 -289 2536 62 3 0 chr4 43156913 43157221 -159171126 - AluY SINE Alu -2 309 1 777 263 145 34 chr4 43157221 43157232 -159171115 + L1ME4a LINE L1 5832 5840 -281 2249 111 3 0 chr4 43157232 43157539 -159170808 - AluSx SINE Alu -4 308 1 777 263 145 34 chr4 43157539 43157713 -159170634 + L1ME4a LINE L1 5840 6121 0 629 244 202 50 chr4 43157753 43158130 -159170217 + L1MC5 LINE L1 7452 7885 -76 2188 118 0 7 chr4 43158417 43158721 -159169626 + AluSx SINE Alu 1 302 -10 191 250 56 14 chr4 43159151 43159223 -159169124 - MIR SINE MIR -122 140 66 2263 99 27 0 chr4 43159381 43159674 -159168673 + AluSx SINE Alu 1 301 -11 2165 124 0 40 chr4 43159764 43160087 -159168260 + AluSg SINE Alu 1 310 0 2184 89 17 14 chr4 43160234 43160526 -159167821 + AluSp SINE Alu 6 298 -15 2309 97 0 0 chr4 43160617 43160917 -159167430 + AluSx SINE Alu 1 300 -12 1153 193 36 5 chr4 43161084 43161377 -159166970 + MER2 DNA MER2_type 1 345 0 2037 114 7 33 chr4 43161664 43161963 -159166384 - AluSx SINE Alu -21 291 1 1552 180 14 17 chr4 43162019 43162313 -159166034 + AluJo SINE Alu 11 303 -9 231 36 0 0 chr4 43162314 43162342 -159166005 + (TAGA)n Simple_repeat Simple_repeat 4 31 0 764 164 8 0 chr4 43162365 43162487 -159165860 - FLAM_C SINE Alu -7 136 14 6367 37 0 0 chr4 43162768 43163526 -159164821 + L1P LINE L1 3257 4014 -2132 1785 194 7 0 chr4 43163679 43163978 -159164369 - AluJo SINE Alu -11 301 1 22 35 0 0 chr4 43163991 43164020 -159164327 + AT_rich Low_complexity Low_complexity 1 29 0 594 217 72 14 chr4 43164036 43164174 -159164173 + LTR8 LTR ERV1 1 146 -545 1737 223 35 50 chr4 43164567 43165135 -159163212 + MER57-int LTR ERV1 2120 2779 -3552 829 181 0 8 chr4 43165138 43165265 -159163082 + FLAM_C SINE Alu 2 127 -16 897 214 5 16 chr4 43165281 43165473 -159162874 + MER57-int LTR ERV1 2768 2957 -3374 643 173 50 148 chr4 43165375 43165652 -159162695 + LTR57-int LTR ERVL 792 1041 -4302 * 871 148 54 0 chr4 43165511 43165660 -159162687 + MER57-int LTR ERV1 2951 3107 -3224 678 152 0 0 chr4 43165683 43165788 -159162559 - FLAM_C SINE Alu -3 140 36 779 173 12 30 chr4 43165789 43165957 -159162390 + MER57-int LTR ERV1 3093 3257 -3074 278 234 26 0 chr4 43165938 43166015 -159162332 + MER57-int LTR ERV1 3480 3558 -2705 * 2277 115 0 10 chr4 43166030 43166342 -159162005 - AluSx SINE Alu -3 309 1 249 208 0 0 chr4 43166491 43166544 -159161803 + L1MC5 LINE L1 7609 7661 -300 1143 149 0 0 chr4 43166575 43166743 -159161604 - AluSg/x SINE Alu -11 299 132 1999 117 19 29 chr4 43166744 43167089 -159161258 - AluSx SINE Alu 0 312 1 322 241 0 25 chr4 43167091 43167170 -159161177 + MER57-int LTR ERV1 6921 6997 -540 1030 147 31 127 chr4 43167199 43167378 -159160969 + LTR54 LTR ERV1 107 302 -208 2483 71 3 0 chr4 43167378 43167686 -159160661 - AluY SINE Alu -2 309 1 1030 147 31 127 chr4 43167686 43167848 -159160499 + LTR54 LTR ERV1 302 478 -32 1352 196 0 61 chr4 43167848 43168174 -159160173 - AluJo SINE Alu -6 306 1 1030 147 31 127 chr4 43168174 43168230 -159160117 + LTR54 LTR ERV1 478 538 28 1782 163 0 17 chr4 43168230 43168524 -159159823 - AluJb SINE Alu -23 289 1 1830 180 0 0 chr4 43168524 43168819 -159159528 - AluJb SINE Alu -17 295 1 1030 147 31 127 chr4 43168819 43168886 -159159461 + LTR54 LTR ERV1 437 509 -1 2153 113 7 10 chr4 43169696 43169998 -159158349 - AluSx SINE Alu -11 301 1 1271 122 0 11 chr4 43170022 43170202 -159158145 - AluSp SINE Alu -12 301 124 1230 167 83 26 chr4 43170413 43170641 -159157706 - AluJb SINE Alu -67 245 5 298 235 0 12 chr4 43170662 43170743 -159157604 - L1ME LINE L1 -345 5776 5697 2373 96 0 0 chr4 43170829 43171122 -159157225 - AluSx SINE Alu -19 293 1 32 0 0 0 chr4 43171219 43171251 -159157096 + AT_rich Low_complexity Low_complexity 1 32 0 1560 161 64 4 chr4 43171291 43171306 -159157041 - AluJb SINE Alu -15 297 284 468 0 0 0 chr4 43171306 43171358 -159156989 + (TG)n Simple_repeat Simple_repeat 1 52 0 1560 161 64 4 chr4 43171358 43171622 -159156725 - AluJb SINE Alu -28 284 1 2339 75 31 0 chr4 43171633 43171925 -159156422 - AluSc SINE Alu -8 301 1 27 49 0 0 chr4 43172003 43172044 -159156303 + AT_rich Low_complexity Low_complexity 1 41 0 2535 60 0 3 chr4 43172456 43172757 -159155590 - AluY SINE Alu -11 300 1 2131 112 25 0 chr4 43172787 43173073 -159155274 - AluSx SINE Alu -15 297 5 2259 101 6 22 chr4 43173236 43173554 -159154793 - AluSq SINE Alu 0 313 1 1455 177 30 39 chr4 43173709 43174014 -159154333 - AluJo SINE Alu -9 303 2 2220 91 0 33 chr4 43174290 43174597 -159153750 - AluSx SINE Alu -15 297 1 865 173 0 0 chr4 43174652 43174785 -159153562 - FLAM_C SINE Alu 0 133 1 2461 77 0 6 chr4 43174786 43175097 -159153250 - AluY SINE Alu -2 309 1 1733 176 11 3 chr4 43175103 43175387 -159152960 - AluJb SINE Alu -17 295 10 1818 146 3 43 chr4 43175574 43175875 -159152472 - AluJo SINE Alu -23 289 1 2019 95 0 0 chr4 43175906 43176192 -159152155 - AluY SINE Alu 0 305 20 325 149 16 174 chr4 43176255 43176301 -159152046 - LTR37B LTR ERV1 -168 300 283 2589 42 7 0 chr4 43176301 43176607 -159151740 - AluY SINE Alu -3 308 1 325 149 16 174 chr4 43176607 43176681 -159151666 - LTR37B LTR ERV1 -185 283 199 1228 167 146 68 chr4 43176847 43177230 -159151117 + L1M4 LINE L1 4671 5083 -1063 2605 101 58 5 chr4 43177235 43177612 -159150735 - L1PA13 LINE L1 -1 6162 5766 416 188 0 0 chr4 43177622 43177702 -159150645 - AluJb SINE Alu -5 307 228 1041 139 0 0 chr4 43177714 43177858 -159150489 - AluJb SINE Alu -167 145 2 189 0 0 0 chr4 43177858 43177879 -159150468 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 951 184 0 0 chr4 43177882 43178034 -159150313 - AluJb SINE Alu -32 280 129 764 153 0 0 chr4 43178186 43178297 -159150050 - AluSq/x SINE Alu -202 111 1 1563 178 135 131 chr4 43178297 43178399 -159149948 + MLT2B1 LTR ERVL 5 105 -415 1570 173 25 11 chr4 43178399 43178677 -159149670 + AluJo SINE Alu 1 282 -30 269 26 26 0 chr4 43178682 43178720 -159149627 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 2136 103 3 0 chr4 43178724 43179006 -159149341 + AluSg SINE Alu 1 283 -27 1563 178 135 131 chr4 43179006 43179404 -159148943 + MLT2B1 LTR ERVL 110 518 -2 2226 104 0 7 chr4 43179888 43180186 -159148161 - AluSx SINE Alu -16 296 1 1742 178 14 3 chr4 43180249 43180542 -159147805 - AluJo SINE Alu -16 296 1 2049 88 4 11 chr4 43180735 43181007 -159147340 + AluSq SINE Alu 13 282 -31 236 71 48 0 chr4 43181011 43181053 -159147294 + A-rich Low_complexity Low_complexity 2 45 0 2371 80 0 7 chr4 43181326 43181626 -159146721 + AluY SINE Alu 1 298 -13 2445 71 0 0 chr4 43181951 43182246 -159146101 + AluY SINE Alu 1 295 -16 186 133 0 0 chr4 43182439 43182469 -159145878 + (TC)n Simple_repeat Simple_repeat 2 31 0 955 70 0 0 chr4 43182755 43182870 -159145477 + AluSq/x SINE Alu 1 115 -198 1754 110 4 49 chr4 43182871 43183134 -159145213 + MER1B DNA MER1_type 129 339 0 187 267 0 0 chr4 43183164 43183209 -159145138 + L2 LINE L2 3203 3247 -25 2021 123 31 3 chr4 43183213 43183506 -159144841 + AluSx SINE Alu 1 301 -11 2296 97 3 10 chr4 43183506 43183806 -159144541 + AluSx SINE Alu 1 298 -14 701 192 0 31 chr4 43184838 43184968 -159143379 - FLAM_C SINE Alu -4 139 14 2243 92 3 0 chr4 43185136 43185420 -159142927 - AluSg SINE Alu -25 285 1 2099 122 3 13 chr4 43185425 43185729 -159142618 - AluSx SINE Alu -11 301 1 584 171 0 0 chr4 43185760 43185848 -159142499 + FRAM SINE Alu 68 155 -21 594 346 28 15 chr4 43185863 43186187 -159142160 + L1MEc LINE L1 38 365 -6031 2100 106 0 50 chr4 43186285 43186605 -159141742 - AluSx SINE Alu -8 304 1 806 145 0 55 chr4 43186605 43186750 -159141597 - FLAM_C SINE Alu -6 137 1 649 300 32 20 chr4 43186751 43186998 -159141349 + L1M4 LINE L1 3918 4167 -1979 564 204 0 29 chr4 43187004 43187107 -159141240 - MLT2B1 LTR ERVL -206 309 210 207 0 0 0 chr4 43187114 43187137 -159141210 + (TG)n Simple_repeat Simple_repeat 1 23 0 2149 118 0 0 chr4 43187154 43187434 -159140913 - AluSx SINE Alu -32 280 1 1382 133 9 5 chr4 43187435 43187645 -159140702 - MLT2B1 LTR ERVL -309 211 1 243 400 94 0 chr4 43187665 43187900 -159140447 + L2 LINE L2 2488 2744 -570 218 319 48 122 chr4 43188005 43188275 -159140072 + L2 LINE L2 2932 3181 -91 240 111 0 0 chr4 43189002 43189038 -159139309 + (T)n Simple_repeat Simple_repeat 1 36 0 407 342 141 8 chr4 43189380 43189614 -159138733 + L3 LINE CR1 129 393 -1184 208 274 68 41 chr4 43189643 43189716 -159138631 + MIR SINE MIR 23 97 -165 1457 151 5 0 chr4 43189939 43190158 -159138189 + AluJo SINE Alu 1 220 -92 1088 191 0 5 chr4 43190158 43190209 -159138138 + AluJb SINE Alu 86 136 -176 2177 128 0 0 chr4 43190209 43190507 -159137840 + AluSq SINE Alu 1 298 -15 1088 191 0 5 chr4 43190507 43190644 -159137703 + AluJb SINE Alu 136 273 -39 188 86 29 0 chr4 43190718 43190753 -159137594 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 826 187 0 74 chr4 43190982 43191103 -159137244 + AluJo SINE Alu 2 130 -182 237 98 0 0 chr4 43191103 43191144 -159137203 + (TA)n Simple_repeat Simple_repeat 1 41 0 2023 138 3 0 chr4 43191148 43191439 -159136908 - AluSx SINE Alu -20 292 1 826 187 0 74 chr4 43191439 43191492 -159136855 + AluJo SINE Alu 133 165 -147 1539 166 0 0 chr4 43191592 43191827 -159136520 + AluJb SINE Alu 62 296 -16 2467 81 0 0 chr4 43191828 43192123 -159136224 + AluSc SINE Alu 1 295 -14 638 281 6 11 chr4 43192123 43192301 -159136046 + L1MEc LINE L1 137 313 -6083 * 677 214 29 5 chr4 43192288 43192494 -159135853 + L1MEc LINE L1 961 1171 -5225 664 184 0 0 chr4 43192505 43192619 -159135728 + FLAM_A SINE Alu 21 134 -8 312 136 0 0 chr4 43192630 43192674 -159135673 + L1MEc LINE L1 1200 1243 -5153 350 203 13 0 chr4 43192678 43192757 -159135590 + L1MA10 LINE L1 6240 6319 -15 850 163 0 15 chr4 43192937 43193072 -159135275 + FLAM_C SINE Alu 1 133 0 187 304 0 0 chr4 43193092 43193138 -159135209 - L2 LINE L2 -90 3182 3137 1827 190 64 93 chr4 43193188 43193659 -159134688 + L1MC4 LINE L1 5175 5272 -908 542 99 0 0 chr4 43193659 43193730 -159134617 + AluJ/FLAM SINE Alu 5 75 -237 1827 190 64 93 chr4 43193730 43194124 -159134223 + L1MC4 LINE L1 5272 5676 -504 * 2353 177 57 16 chr4 43193772 43194280 -159134067 + L1MB4 LINE L1 5651 6179 -1 936 139 53 91 chr4 43194289 43194433 -159133914 + L1MB8 LINE L1 5973 6108 -70 2134 119 0 13 chr4 43194433 43194744 -159133603 - AluY SINE Alu -4 307 1 936 139 53 91 chr4 43194744 43194808 -159133539 + L1MB8 LINE L1 6108 6173 -5 311 304 54 80 chr4 43194843 43195323 -159133024 - L2 LINE L2 -203 3069 2590 1812 156 14 0 chr4 43195469 43195751 -159132596 - AluJb SINE Alu -26 286 1 1245 155 14 46 chr4 43195962 43196181 -159132166 + AluJo SINE Alu 87 298 -14 26 0 0 0 chr4 43196307 43196333 -159132014 + AT_rich Low_complexity Low_complexity 1 26 0 2261 111 0 0 chr4 43196692 43196990 -159131357 + AluSx SINE Alu 1 298 -14 968 139 76 0 chr4 43196991 43197135 -159131212 + AluSg/x SINE Alu 132 286 -26 241 287 89 25 chr4 43197222 43197379 -159130968 + L1MC/D LINE L1 5713 5879 -1929 1001 163 12 0 chr4 43197716 43197876 -159130471 - AluSp SINE Alu -4 309 148 1760 175 3 16 chr4 43198065 43198368 -159129979 - AluJb SINE Alu -13 299 1 1674 121 32 12 chr4 43199376 43199624 -159128723 + AluSx SINE Alu 1 253 -59 11787 24 0 0 chr4 43199724 43201835 -159126512 + L1PA3 LINE L1 4040 6152 -3 1892 147 3 23 chr4 43201879 43202185 -159126162 - AluSx SINE Alu -12 300 1 231 227 164 27 chr4 43202236 43202346 -159126001 - L1MC4a LINE L1 -1634 6174 6050 2490 73 3 0 chr4 43202364 43202665 -159125682 - AluSp SINE Alu -11 302 1 198 204 74 0 chr4 43202808 43202862 -159125485 + MIR SINE MIR 116 173 -89 1658 186 0 0 chr4 43203082 43203346 -159125001 - AluJb SINE Alu -48 264 1 189 0 0 0 chr4 43203356 43203377 -159124970 + (T)n Simple_repeat Simple_repeat 1 21 0 1019 251 126 19 chr4 43203473 43203709 -159124638 + MER20B DNA MER1_type 170 380 -403 1746 86 0 0 chr4 43203709 43203929 -159124418 - AluSx SINE Alu -7 303 84 1019 251 126 19 chr4 43203929 43204106 -159124241 + MER20B DNA MER1_type 380 627 -156 2277 233 146 50 chr4 43204559 43205502 -159122845 - HAL1 LINE L1 -15 2492 1459 1299 237 152 45 chr4 43205504 43205912 -159122435 - L2 LINE L2 -411 2903 2413 2494 81 0 3 chr4 43205912 43206221 -159122126 + AluSc SINE Alu 1 308 -1 1299 237 152 45 chr4 43206221 43206391 -159121956 - L2 LINE L2 -901 2413 2263 576 145 0 0 chr4 43206524 43206607 -159121740 - AluSx SINE Alu -228 84 2 2486 83 0 0 chr4 43206677 43206990 -159121357 + AluSq SINE Alu 1 313 0 1158 94 0 0 chr4 43206992 43207168 -159121179 + AluSg/x SINE Alu 133 308 0 27 29 0 0 chr4 43207193 43207227 -159121120 + AT_rich Low_complexity Low_complexity 1 34 0 309 77 0 0 chr4 43207228 43207267 -159121080 + LTR23 LTR ERV1 320 358 -79 22 35 0 0 chr4 43207272 43207301 -159121046 + AT_rich Low_complexity Low_complexity 1 29 0 1935 157 3 7 chr4 43207938 43208238 -159120109 + AluJo SINE Alu 5 303 -9 1799 152 11 0 chr4 43208247 43208530 -159119817 + AluJb SINE Alu 11 296 -16 2288 103 3 0 chr4 43208581 43208882 -159119465 + AluSx SINE Alu 1 302 -10 183 42 0 0 chr4 43209146 43209170 -159119177 + (CA)n Simple_repeat Simple_repeat 2 25 0 625 258 220 32 chr4 43209226 43209722 -159118625 + L3 LINE CR1 388 976 -601 25 51 0 0 chr4 43209765 43209804 -159118543 + AT_rich Low_complexity Low_complexity 1 39 0 714 160 0 17 chr4 43209809 43209928 -159118419 - FLAM_C SINE Alu -25 118 2 248 270 0 29 chr4 43209969 43210058 -159118289 + MIR SINE MIR 38 123 -85 1165 127 0 0 chr4 43210138 43210288 -159118059 - AluJo SINE Alu -29 283 134 2366 98 3 0 chr4 43210288 43210593 -159117754 - AluSx SINE Alu -6 306 1 14224 80 8 1 chr4 43210605 43211294 -159117053 - L1PA7 LINE L1 0 6154 5472 2428 92 0 0 chr4 43211294 43211599 -159116748 - AluY SINE Alu -6 305 1 14224 80 8 1 chr4 43211599 43213589 -159114758 - L1PA7 LINE L1 -682 5472 3464 7217 137 17 30 chr4 43213589 43214856 -159113491 - L1PA7 LINE L1 -4121 2025 775 770 211 0 25 chr4 43214856 43215017 -159113330 - AluJo SINE Alu -154 158 2 2602 40 0 7 chr4 43215331 43215632 -159112715 + AluY SINE Alu 1 299 -12 2174 100 7 13 chr4 43215861 43215996 -159112351 + AluSx SINE Alu 1 135 -177 2271 90 0 32 chr4 43215996 43216358 -159111989 + AluY SINE Alu 1 311 0 2174 100 7 13 chr4 43216358 43216521 -159111826 + AluSx SINE Alu 135 297 -15 294 95 0 0 chr4 43216637 43216679 -159111668 + (TTTTC)n Simple_repeat Simple_repeat 4 45 0 1017 105 13 7 chr4 43216891 43217043 -159111304 + BC200 scRNA scRNA 6 158 -42 1988 116 7 7 chr4 43217101 43217393 -159110954 - AluSx SINE Alu -20 292 1 212 281 0 47 chr4 43217717 43217781 -159110566 - MIR3 SINE MIR -41 167 107 910 94 8 16 chr4 43218113 43218241 -159110106 - AluJb SINE Alu -185 127 1 2515 51 3 10 chr4 43218254 43218566 -159109781 - AluY SINE Alu -1 310 1 1726 99 4 4 chr4 43218612 43218867 -159109480 - AluSx SINE Alu 0 305 51 264 250 40 0 chr4 43218893 43218969 -159109378 - L2 LINE L2 0 3313 3235 391 151 32 43 chr4 43219074 43219167 -159109180 + MER5A DNA MER1_type 1 92 -97 279 0 0 0 chr4 43219186 43219217 -159109130 + (TG)n Simple_repeat Simple_repeat 1 31 0 252 0 0 0 chr4 43219216 43219244 -159109103 + (GA)n Simple_repeat Simple_repeat 1 28 0 * 224 258 0 15 chr4 43219982 43220048 -159108299 + (CGG)n Simple_repeat Simple_repeat 2 66 0 201 23 47 47 chr4 43222109 43222152 -159106195 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 24 0 0 0 chr4 43222885 43222909 -159105438 + AT_rich Low_complexity Low_complexity 1 24 0 223 325 181 0 chr4 43223225 43223308 -159105039 - MIR SINE MIR -118 144 47 2242 121 0 13 chr4 43223491 43223806 -159104541 - AluSx SINE Alu -1 311 1 2144 135 3 0 chr4 43223952 43224299 -159104048 - AluSp SINE Alu 0 348 1 740 134 30 144 chr4 43224525 43224726 -159103621 - MER20B DNA MER1_type -2 217 40 1487 105 14 5 chr4 43224747 43224956 -159103391 - AluSg/x SINE Alu -20 292 82 1463 189 38 7 chr4 43224983 43225274 -159103073 + AluJo SINE Alu 1 300 -12 2481 67 3 0 chr4 43225312 43225612 -159102735 + AluSc SINE Alu 1 301 -8 938 161 6 6 chr4 43225854 43226015 -159102332 + AluJb SINE Alu 136 296 -16 25 31 0 0 chr4 43226019 43226051 -159102296 + AT_rich Low_complexity Low_complexity 1 32 0 1977 146 7 7 chr4 43226286 43226587 -159101760 - AluJb SINE Alu -11 301 1 2061 86 6 86 chr4 43226615 43226939 -159101408 - AluSg SINE Alu -10 300 3 2244 115 0 3 chr4 43226940 43227244 -159101103 - AluSx SINE Alu -9 303 1 954 134 34 50 chr4 43227423 43227602 -159100745 - AluSg/x SINE Alu -3 307 132 1780 120 23 78 chr4 43227602 43227764 -159100583 - AluSx SINE Alu -19 293 154 2357 77 0 17 chr4 43227764 43228061 -159100286 - AluY SINE Alu -19 292 1 1780 120 23 78 chr4 43228061 43228207 -159100140 - AluSx SINE Alu -158 154 2 1396 157 149 4 chr4 43228217 43228478 -159099869 - AluSg SINE Alu -1 299 1 1964 132 13 10 chr4 43228649 43228953 -159099394 - AluSx SINE Alu -5 307 3 1834 152 45 0 chr4 43228955 43229245 -159099102 - AluSx SINE Alu -9 303 1 1921 135 50 0 chr4 43229283 43229565 -159098782 - AluJo SINE Alu -16 296 1 2186 91 10 14 chr4 43229649 43229945 -159098402 - AluSp SINE Alu -18 295 1 303 247 227 27 chr4 43230185 43230335 -159098012 - L1ME3A LINE L1 -94 6076 5897 318 264 194 14 chr4 43230408 43230552 -159097795 - MIR3 SINE MIR -7 201 32 207 271 189 41 chr4 43230756 43230878 -159097469 + MIR SINE MIR 7 146 -116 1649 138 173 0 chr4 43231142 43231425 -159096922 + MER44D DNA MER2_type 2 603 -6 25 0 0 0 chr4 43231807 43231832 -159096515 + AT_rich Low_complexity Low_complexity 1 25 0 599 94 35 0 chr4 43231832 43231917 -159096430 - HY3 scRNA scRNA -1 100 13 225 0 0 0 chr4 43232003 43232028 -159096319 + (ATTG)n Simple_repeat Simple_repeat 2 26 0 1521 128 67 67 chr4 43232032 43232314 -159096033 - AluJo SINE Alu -30 282 1 223 341 96 22 chr4 43232337 43232472 -159095875 - MIR SINE MIR -88 174 30 25 75 0 0 chr4 43232808 43232861 -159095486 + AT_rich Low_complexity Low_complexity 1 53 0 2574 62 0 0 chr4 43232901 43233206 -159095141 - AluY SINE Alu -5 306 2 1999 126 30 0 chr4 43233378 43233679 -159094668 - AluSg SINE Alu 0 309 1 293 247 105 53 chr4 43233698 43233821 -159094526 - L1ME LINE L1 -691 5473 5341 2148 109 7 10 chr4 43233821 43234123 -159094224 - AluSx SINE Alu -11 301 1 293 247 105 53 chr4 43234123 43234152 -159094195 - L1ME LINE L1 -823 5341 5315 288 130 0 2 chr4 43234162 43234208 -159094139 + AluSp/q SINE Alu 254 294 -9 231 143 20 0 chr4 43234246 43234295 -159094052 - Alu SINE Alu -4 295 246 707 158 26 0 chr4 43234302 43234416 -159093931 - AluSq/x SINE Alu -194 118 2 1140 147 78 4 chr4 43234509 43234741 -159093606 - L1MB3 LINE L1 0 6183 5935 1498 147 33 90 chr4 43234851 43235151 -159093196 - AluJb SINE Alu -20 292 10 303 67 93 0 chr4 43235406 43235459 -159092888 - L1MB3 LINE L1 -273 5910 5859 306 0 0 0 chr4 43235477 43235511 -159092836 + (TA)n Simple_repeat Simple_repeat 2 35 0 2136 108 3 17 chr4 43235511 43235808 -159092539 - AluSc SINE Alu -16 293 1 1443 156 3 81 chr4 43235819 43235985 -159092362 - AluJo SINE Alu -25 287 154 2573 40 3 13 chr4 43235985 43236287 -159092060 - AluY SINE Alu -12 299 1 1443 156 3 81 chr4 43236287 43236428 -159091919 - AluJo SINE Alu -158 154 4 988 104 0 15 chr4 43236434 43236569 -159091778 - AluSq/x SINE Alu -179 133 1 24 0 0 0 chr4 43236801 43236825 -159091522 + AT_rich Low_complexity Low_complexity 1 24 0 1575 184 0 36 chr4 43237204 43237508 -159090839 - AluJb SINE Alu -19 293 1 1330 206 34 17 chr4 43237546 43237675 -159090672 + AluJo SINE Alu 9 134 -178 2159 129 3 3 chr4 43237675 43237978 -159090369 + AluSx SINE Alu 1 303 -9 1330 206 34 17 chr4 43237978 43238139 -159090208 + AluJo SINE Alu 134 304 -8 2237 122 10 0 chr4 43238184 43238488 -159089859 - AluSg SINE Alu -3 307 1 4884 96 104 114 chr4 43238626 43240029 -159088318 - pTR5 LTR ERV1 0 2438 740 1679 193 7 10 chr4 43241708 43242004 -159086343 - AluJo SINE Alu -17 295 1 271 295 70 26 chr4 43242050 43242206 -159086141 - MLT1J LTR MaLR -335 176 14 187 336 43 17 chr4 43242210 43242326 -159086021 - L2 LINE L2 -644 2670 2552 1906 133 0 11 chr4 43242345 43242616 -159085731 - AluJo SINE Alu -44 268 1 1394 178 34 41 chr4 43242766 43243059 -159085288 + AluJb SINE Alu 1 291 -21 547 227 44 46 chr4 43243237 43243455 -159084892 - L1MC5 LINE L1 -547 7495 7261 1112 205 80 8 chr4 43243503 43243742 -159084605 - MER6A DNA MER2_type -349 256 1 1886 107 40 0 chr4 43243744 43243997 -159084350 - AluSx SINE Alu -1 311 49 1666 172 17 14 chr4 43243999 43244290 -159084057 - AluJb SINE Alu -8 304 13 2314 107 0 0 chr4 43244317 43244627 -159083720 - AluY SINE Alu -1 310 1 2068 135 0 0 chr4 43244783 43245072 -159083275 - AluSq SINE Alu -24 289 1 1690 151 58 14 chr4 43245073 43245364 -159082983 - AluJo SINE Alu -8 304 1 263 122 0 0 chr4 43245364 43245405 -159082942 - L1MCa LINE L1 -5571 993 953 1865 139 0 60 chr4 43245518 43245834 -159082513 + AluJb SINE Alu 1 297 -15 1387 215 42 67 chr4 43245835 43246148 -159082199 - L1MCa LINE L1 -5108 937 680 1681 167 33 23 chr4 43246148 43246453 -159081894 + AluJb SINE Alu 1 308 -4 1387 215 42 67 chr4 43246453 43246777 -159081570 - L1MCa LINE L1 -5365 680 349 1365 179 0 0 chr4 43246777 43246989 -159081358 - AluJo SINE Alu -100 212 1 925 192 73 26 chr4 43246998 43247232 -159081115 - MLT1C LTR MaLR -24 443 199 828 111 0 0 chr4 43247235 43247343 -159081004 - AluSq/x SINE Alu -204 108 1 916 128 0 8 chr4 43247430 43247563 -159080784 - FLAM_C SINE Alu -6 137 6 2053 137 7 3 chr4 43247646 43247945 -159080402 - AluSx SINE Alu -12 300 1 419 144 39 19 chr4 43248267 43248371 -159079976 + HsTC2 DNA Tc2 1557 1662 -236 861 213 35 35 chr4 43248426 43248628 -159079719 - AluJb SINE Alu -29 283 82 2029 96 0 31 chr4 43248751 43249044 -159079303 - AluY SINE Alu -27 284 1 1051 90 0 0 chr4 43249044 43249178 -159079169 - AluSg1 SINE Alu -175 134 1 257 180 0 0 chr4 43249179 43249229 -159079118 + L1ME LINE L1 5631 5680 -486 1799 158 11 3 chr4 43249345 43249629 -159078718 + AluJo SINE Alu 2 287 -25 910 144 11 86 chr4 43249639 43249826 -159078521 + AluJb SINE Alu 129 301 -11 692 77 0 0 chr4 43250037 43250128 -159078219 + AluSg SINE Alu 2 92 -218 1078 88 40 0 chr4 43250128 43250276 -159078071 + AluY SINE Alu 126 279 -32 623 186 0 0 chr4 43250389 43250491 -159077856 - AluJb SINE Alu -209 103 2 1859 133 14 21 chr4 43250654 43250940 -159077407 + AluJb SINE Alu 15 298 -14 1858 151 17 3 chr4 43250940 43251232 -159077115 + AluSg SINE Alu 1 296 -14 330 278 32 8 chr4 43251390 43251516 -159076831 - AluY SINE Alu -10 291 163 1002 157 5 56 chr4 43251616 43251832 -159076515 + AluSc SINE Alu 99 303 -6 811 117 0 0 chr4 43251836 43251947 -159076400 - FLAM_C SINE Alu -32 111 1 2062 103 57 7 chr4 43252181 43252462 -159075885 - AluSx SINE Alu -17 295 1 382 146 15 7 chr4 43252824 43253023 -159075324 + AluJo SINE Alu 38 276 -26 370 234 16 0 chr4 43253025 43253149 -159075198 + (TG)n Simple_repeat Simple_repeat 1 126 0 933 165 10 72 chr4 43253319 43253398 -159074949 + AluJo SINE Alu 65 147 -165 414 0 0 0 chr4 43253398 43253444 -159074903 + (TA)n Simple_repeat Simple_repeat 1 46 0 933 165 10 72 chr4 43253444 43253558 -159074789 + AluJo SINE Alu 147 246 -66 2323 104 0 0 chr4 43253679 43253977 -159074370 - AluSg SINE Alu -12 298 1 2197 130 0 0 chr4 43254467 43254767 -159073580 + AluSx SINE Alu 1 300 -12 250 289 0 0 chr4 43254867 43254943 -159073404 - L1MB7 LINE L1 -25 6159 6084 1217 132 6 0 chr4 43254945 43255119 -159073228 - AluSq SINE Alu -138 175 1 2252 79 7 0 chr4 43255132 43255446 -159072901 - AluY SINE Alu 0 316 1 1623 121 89 39 chr4 43255727 43256008 -159072339 + AluSg SINE Alu 1 295 -15 664 196 108 39 chr4 43256023 43256227 -159072120 + MIR SINE MIR 34 251 -11 1250 117 27 0 chr4 43256547 43256761 -159071586 - AluSp SINE Alu 0 347 126 2727 42 0 3 chr4 43256761 43257073 -159071274 - AluY SINE Alu 0 311 1 2059 143 10 0 chr4 43257330 43257631 -159070716 - AluSq SINE Alu -9 304 1 1885 138 3 18 chr4 43257645 43257927 -159070420 - AluSx SINE Alu -21 291 14 21 57 0 0 chr4 43258521 43258556 -159069791 + AT_rich Low_complexity Low_complexity 1 35 0 2300 97 0 0 chr4 43259113 43259402 -159068945 - AluSg SINE Alu -19 291 3 2543 60 3 3 chr4 43259512 43259813 -159068534 - AluY SINE Alu -10 301 1 1313 201 25 36 chr4 43259832 43260111 -159068236 + AluJb SINE Alu 17 292 -20 256 353 0 0 chr4 43260173 43260258 -159068089 - L2 LINE L2 0 3272 3188 211 294 110 22 chr4 43260878 43261014 -159067333 - L2 LINE L2 -926 2388 2241 1974 141 10 7 chr4 43261031 43261328 -159067019 + AluSx SINE Alu 1 298 -14 2280 65 0 88 chr4 43261335 43261674 -159066673 + AluY SINE Alu 1 309 -2 192 200 0 0 chr4 43261697 43261737 -159066610 + GA-rich Low_complexity Low_complexity 1 40 0 473 291 7 33 chr4 43261836 43261987 -159066360 - AluJo SINE Alu -41 271 125 2187 117 0 13 chr4 43262144 43262453 -159065894 - AluSg SINE Alu -5 305 1 308 147 167 20 chr4 43262485 43262587 -159065760 - HsTC2 DNA Tc2 -56 1842 1726 315 184 0 17 chr4 43262590 43262661 -159065686 + AluS SINE Alu 1 57 -244 911 107 15 0 chr4 43262852 43262983 -159065364 + BC200 scRNA scRNA 2 134 -66 1495 207 0 14 chr4 43263083 43263378 -159064969 - AluJo SINE Alu -21 291 1 275 235 108 0 chr4 43263417 43263519 -159064828 - L1MDa LINE L1 -3272 3268 3156 466 188 0 0 chr4 43263524 43263604 -159064743 - FRAM SINE Alu -50 126 47 2336 94 3 19 chr4 43263666 43263975 -159064372 + AluSx SINE Alu 1 304 -8 468 241 96 54 chr4 43263975 43264162 -159064185 - L1MDa LINE L1 -3461 3079 2876 2240 98 7 3 chr4 43264162 43264459 -159063888 - AluSp SINE Alu -15 298 1 468 241 96 54 chr4 43264459 43264532 -159063815 - L1MDa LINE L1 -3664 2876 2808 1531 159 0 23 chr4 43264534 43264709 -159063638 - AluJb SINE Alu -10 302 133 2174 101 10 7 chr4 43264709 43265007 -159063340 - AluSx SINE Alu -13 299 1 1531 159 0 23 chr4 43265007 43265095 -159063252 - AluJb SINE Alu -179 133 45 2227 125 0 0 chr4 43265107 43265411 -159062936 - AluSx SINE Alu -8 304 1 324 167 61 0 chr4 43265412 43265478 -159062869 - L1MDa LINE L1 -3927 2613 2544 2010 143 6 13 chr4 43265496 43265810 -159062537 - AluSx SINE Alu 0 312 1 2089 127 3 3 chr4 43265826 43266140 -159062207 - AluSq SINE Alu 0 314 1 344 286 261 14 chr4 43266349 43266538 -159061809 + L2 LINE L2 1299 1440 -1874 2216 110 0 13 chr4 43266538 43266838 -159061509 - AluSg SINE Alu -14 296 1 344 286 261 14 chr4 43266838 43267001 -159061346 + L2 LINE L2 1440 1738 -1576 211 291 0 0 chr4 43267002 43267057 -159061290 - MIR SINE MIR -198 64 10 1387 75 0 0 chr4 43267080 43267254 -159061093 - AluY SINE Alu -9 302 129 2250 95 3 3 chr4 43267359 43267654 -159060693 + AluY SINE Alu 1 295 -16 1327 172 82 53 chr4 43267816 43268119 -159060228 + AluJb SINE Alu 1 312 0 1144 206 81 0 chr4 43268247 43268470 -159059877 - AluJb SINE Alu -71 241 1 1647 183 67 0 chr4 43268512 43268797 -159059550 + AluJb SINE Alu 1 304 -8 1779 183 40 108 chr4 43268815 43268994 -159059353 + MSTA LTR MaLR 1 191 -237 2248 105 7 0 chr4 43268994 43269290 -159059057 + AluSp SINE Alu 1 298 -15 1852 147 39 29 chr4 43269299 43269606 -159058741 + AluSx SINE Alu 1 310 -2 1939 114 25 0 chr4 43269615 43269895 -159058452 + AluSg SINE Alu 1 287 -23 1779 183 40 108 chr4 43269895 43270149 -159058198 + MSTA LTR MaLR 207 423 -5 733 204 0 0 chr4 43270183 43270315 -159058032 + AluJo SINE Alu 3 134 -178 261 0 0 0 chr4 43270332 43270361 -159057986 + (TTA)n Simple_repeat Simple_repeat 2 30 0 1997 104 0 24 chr4 43270365 43270652 -159057695 - AluSg1 SINE Alu -29 280 1 1859 199 0 0 chr4 43271234 43271546 -159056801 - 7SLRNA srpRNA srpRNA -8 312 1 403 254 43 7 chr4 43271591 43271725 -159056622 - L1ME3 LINE L1 -52 6110 5972 182 128 43 0 chr4 43271726 43271773 -159056574 + T-rich Low_complexity Low_complexity 2 50 0 1276 29 0 0 chr4 43271793 43271930 -159056417 - AluY SINE Alu -174 137 1 1756 95 4 4 chr4 43271976 43272231 -159056116 - AluSx SINE Alu 0 305 51 264 250 40 0 chr4 43272257 43272333 -159056014 - L2 LINE L2 0 3313 3235 391 151 32 43 chr4 43272438 43272531 -159055816 + MER5A DNA MER1_type 1 92 -97 264 30 0 0 chr4 43272550 43272583 -159055764 + (TG)n Simple_repeat Simple_repeat 1 33 0 180 0 0 0 chr4 43272582 43272602 -159055745 + (GA)n Simple_repeat Simple_repeat 1 20 0 * 259 261 0 0 chr4 43273340 43273405 -159054942 + (CGG)n Simple_repeat Simple_repeat 2 66 0 201 23 47 47 chr4 43275466 43275509 -159052838 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 270 154 31 15 chr4 43275987 43276052 -159052295 + L1MC4a LINE L1 5871 5936 -1872 24 0 0 0 chr4 43276245 43276269 -159052078 + AT_rich Low_complexity Low_complexity 1 24 0 223 325 181 0 chr4 43276585 43276668 -159051679 - MIR SINE MIR -118 144 47 2242 121 0 13 chr4 43276851 43277166 -159051181 - AluSx SINE Alu -1 311 1 2373 103 3 0 chr4 43277317 43277627 -159050720 - AluSp SINE Alu -2 311 1 740 134 30 144 chr4 43277853 43278054 -159050293 - MER20B DNA MER1_type -2 217 40 1487 105 14 5 chr4 43278075 43278284 -159050063 - AluSg/x SINE Alu -20 292 82 899 192 44 11 chr4 43278311 43278493 -159049854 + AluJo SINE Alu 1 188 -124 1139 74 0 0 chr4 43278595 43278730 -159049617 - AluSc SINE Alu -174 135 1 209 221 162 78 chr4 43278946 43279100 -159049247 + MIR SINE MIR 96 262 0 272 321 18 37 chr4 43279147 43279256 -159049091 - MER5A DNA MER1_type -1 188 82 636 306 174 34 chr4 43279400 43280093 -159048254 - L2 LINE L2 -1 3312 2527 2309 110 3 0 chr4 43280394 43280703 -159047644 + AluSx SINE Alu 1 310 -2 248 184 0 20 chr4 43281011 43281060 -159047287 - MER44D DNA MER2_type -1 704 657 722 167 0 62 chr4 43281060 43281204 -159047143 + AluJo SINE Alu 2 136 -176 1426 102 127 36 chr4 43281216 43281491 -159046856 - MER44D DNA MER2_type -39 570 1 2198 99 7 0 chr4 43284002 43284285 -159044062 + AluSx SINE Alu 1 285 -27 249 57 0 0 chr4 43285165 43285200 -159043147 + (TTG)n Simple_repeat Simple_repeat 2 36 0 2076 69 0 101 chr4 43285202 43285520 -159042827 - AluY SINE Alu -25 286 1 1988 138 10 7 chr4 43285527 43285824 -159042523 - AluSx SINE Alu -14 298 1 211 294 110 22 chr4 43285841 43285977 -159042370 + L2 LINE L2 2241 2388 -926 256 353 0 0 chr4 43286597 43286682 -159041665 + L2 LINE L2 3188 3272 0 1327 197 25 36 chr4 43286744 43287023 -159041324 - AluJb SINE Alu -20 292 17 1840 106 98 7 chr4 43287042 43287317 -159041030 + AluSx SINE Alu 1 300 -12 466 219 159 7 chr4 43287771 43287922 -159040425 - MIR SINE MIR -17 245 72 326 113 81 0 chr4 43287983 43288045 -159040302 + L2 LINE L2 3173 3239 -74 1896 186 0 0 chr4 43288317 43288623 -159039724 - AluSx SINE Alu -6 306 1 21 0 0 0 chr4 43288700 43288721 -159039626 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr4 43288887 43288909 -159039438 + AT_rich Low_complexity Low_complexity 1 22 0 2245 120 3 0 chr4 43288978 43289278 -159039069 - AluSx SINE Alu -11 301 1 265 307 47 31 chr4 43289361 43289488 -159038859 - MIR SINE MIR -114 148 20 1564 149 111 0 chr4 43289751 43290012 -159038335 - AluSg SINE Alu -12 298 9 1495 181 3 50 chr4 43290161 43290464 -159037883 + AluJb SINE Alu 1 289 -23 1152 147 6 0 chr4 43290844 43291021 -159037326 - AluSg/x SINE Alu -1 309 132 2542 59 0 3 chr4 43291022 43291326 -159037021 - AluY SINE Alu -8 303 1 2175 100 7 3 chr4 43291825 43292114 -159036233 + AluSq SINE Alu 1 290 -23 512 246 146 6 chr4 43293911 43294082 -159034265 - MIR SINE MIR -55 207 13 715 256 64 12 chr4 43294130 43294302 -159034045 - AluJo SINE Alu -5 307 127 1990 125 16 13 chr4 43294308 43294619 -159033728 - AluSx SINE Alu 0 312 1 2358 61 0 14 chr4 43294678 43294974 -159033373 - AluY SINE Alu -19 292 1 2378 84 0 0 chr4 43295086 43295384 -159032963 - AluSg SINE Alu -7 303 6 691 250 0 0 chr4 43295396 43295532 -159032815 - FLAM_C SINE Alu -6 137 2 1203 78 12 6 chr4 43296035 43296202 -159032145 + AluY SINE Alu 131 298 -13 2569 57 0 3 chr4 43296225 43296525 -159031822 + AluY SINE Alu 1 299 -12 2284 97 0 0 chr4 43296635 43296924 -159031423 + AluSg SINE Alu 3 291 -19 21 57 0 0 chr4 43297481 43297516 -159030831 + AT_rich Low_complexity Low_complexity 1 35 0 1874 154 3 17 chr4 43298099 43298392 -159029955 + AluSx SINE Alu 3 291 -21 2041 143 10 0 chr4 43298406 43298707 -159029640 + AluSq SINE Alu 1 304 -9 339 214 232 6 chr4 43298917 43298964 -159029383 - L1MC5 LINE L1 -32 7929 7894 2573 43 0 3 chr4 43298964 43299263 -159029084 + AluY SINE Alu 1 298 -13 339 214 232 6 chr4 43299263 43299383 -159028964 - L1MC5 LINE L1 -67 7894 7724 2292 81 0 3 chr4 43299560 43299894 -159028453 + AluY SINE Alu 1 333 0 34 24 0 0 chr4 43299937 43299978 -159028369 + AT_rich Low_complexity Low_complexity 1 41 0 595 179 8 49 chr4 43299978 43300101 -159028246 - FLAM_C SINE Alu -25 118 1 230 83 0 56 chr4 43300109 43300145 -159028202 + HSMAR1 DNA Mariner 1 34 -1253 21 0 0 0 chr4 43300803 43300824 -159027523 + AT_rich Low_complexity Low_complexity 1 21 0 308 333 8 60 chr4 43301101 43301218 -159027129 - L2 LINE L2 -26 3246 3136 2409 181 35 0 chr4 43302115 43302545 -159025802 - L1MB3 LINE L1 -1 6182 5738 1298 100 0 6 chr4 43302548 43302728 -159025619 - AluY SINE Alu -8 303 125 1878 89 0 0 chr4 43302736 43302972 -159025375 - AluSg/x SINE Alu -11 301 66 25 31 0 0 chr4 43303117 43303149 -159025198 + AT_rich Low_complexity Low_complexity 1 32 0 851 211 0 26 chr4 43303169 43303325 -159025022 - FRAM SINE Alu -21 155 4 903 152 0 36 chr4 43303433 43303571 -159024776 + FLAM_C SINE Alu 1 133 0 217 358 11 0 chr4 43303604 43303699 -159024648 - L3 LINE CR1 -163 1414 1319 29 47 0 0 chr4 43303724 43303767 -159024580 + AT_rich Low_complexity Low_complexity 1 43 0 1545 178 34 17 chr4 43304314 43304437 -159023910 + AluSx SINE Alu 1 120 -192 183 42 0 0 chr4 43304437 43304461 -159023886 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1545 178 34 17 chr4 43304461 43304629 -159023718 + AluSx SINE Alu 120 297 -15 2327 93 17 0 chr4 43304852 43305152 -159023195 + AluSx SINE Alu 1 305 -7 717 241 0 0 chr4 43305495 43305628 -159022719 - AluJo SINE Alu -178 134 2 1945 148 3 22 chr4 43305663 43305981 -159022366 - AluJb SINE Alu 0 312 1 772 163 0 31 chr4 43306031 43306160 -159022187 - FLAM_C SINE Alu 0 143 19 1064 175 0 10 chr4 43306260 43306454 -159021893 + AluSg/x SINE Alu 121 312 0 1194 70 16 81 chr4 43306587 43306773 -159021574 - AluY SINE Alu -11 300 127 2614 58 0 0 chr4 43306778 43307089 -159021258 - AluY SINE Alu 0 311 1 847 193 0 0 chr4 43307179 43307319 -159021028 + MER46A DNA MER2_type 2 141 -95 879 184 0 46 chr4 43307323 43307497 -159020850 + FRAM SINE Alu 1 166 0 1115 202 46 5 chr4 43307564 43307782 -159020565 + AluJb SINE Alu 5 231 -81 872 86 0 9 chr4 43308291 43308407 -159019940 + AluSq/x SINE Alu 1 115 -197 429 145 0 0 chr4 43308422 43308491 -159019856 + AluYb8 SINE Alu 229 297 -21 315 350 84 15 chr4 43308512 43308715 -159019632 - L2 LINE L2 -548 2766 2550 1641 148 19 4 chr4 43308989 43309245 -159019102 - AluJb SINE Alu -37 275 16 191 244 0 0 chr4 43309246 43309291 -159019056 + MIR SINE MIR 192 236 -26 717 255 75 19 chr4 43310690 43310902 -159017445 + MIR SINE MIR 4 227 -35 1403 152 18 0 chr4 43310902 43311119 -159017228 - AluJb SINE Alu -7 305 85 2492 93 0 0 chr4 43311467 43311780 -159016567 - AluSq SINE Alu 0 313 1 1474 267 166 13 chr4 43312233 43312850 -159015497 + L2 LINE L2 2003 2735 -579 2177 142 0 0 chr4 43312850 43313159 -159015188 + AluSx SINE Alu 2 310 -2 1474 267 166 13 chr4 43313159 43313220 -159015127 + L2 LINE L2 2735 2785 -529 2081 121 0 22 chr4 43313722 43314037 -159014310 - AluSx SINE Alu -4 308 1 623 215 144 63 chr4 43314223 43314347 -159014000 + L1ME LINE L1 5385 5498 -664 2353 98 0 16 chr4 43314347 43314664 -159013683 + AluSx SINE Alu 1 312 0 623 215 144 63 chr4 43314664 43314890 -159013457 + L1ME LINE L1 5498 5769 -393 2539 174 40 65 chr4 43315005 43315609 -159012738 - L1M3 LINE L1 -404 5779 5161 839 168 0 0 chr4 43315609 43315734 -159012613 - FLAM_A SINE Alu -4 129 5 2539 174 40 65 chr4 43315734 43315766 -159012581 - L1M3 LINE L1 -1022 5161 5130 2141 134 3 6 chr4 43315766 43316079 -159012268 - AluSx SINE Alu 0 312 1 2539 174 40 65 chr4 43316079 43316301 -159012046 - L1M3 LINE L1 -1053 5130 4941 2245 72 20 10 chr4 43316313 43316651 -159011696 - AluY SINE Alu 0 311 1 28 0 0 0 chr4 43316874 43316902 -159011445 + AT_rich Low_complexity Low_complexity 1 28 0 1987 116 0 47 chr4 43317184 43317503 -159010844 + AluSx SINE Alu 4 307 -5 801 162 0 0 chr4 43317593 43317710 -159010637 - AluJb SINE Alu -195 117 1 1065 134 35 6 chr4 43317710 43317882 -159010465 - L1M2 LINE L1 -683 5608 5432 1458 161 124 22 chr4 43317882 43318156 -159010191 - AluSx SINE Alu -6 306 5 366 161 0 0 chr4 43318167 43318223 -159010124 - MER5A DNA MER1_type 0 189 134 243 140 0 0 chr4 43318232 43318282 -159010065 + (T)n Simple_repeat Simple_repeat 1 50 0 381 170 217 19 chr4 43320718 43320824 -159007523 - MER5A DNA MER1_type -62 127 1 1700 156 22 0 chr4 43320889 43321165 -159007182 - AluSx SINE Alu -30 282 1 667 180 47 0 chr4 43321165 43321293 -159007054 + MER105 DNA DNA 70 203 -1 1868 149 0 48 chr4 43321317 43321632 -159006715 + AluJb SINE Alu 12 311 -1 2514 25 0 0 chr4 43321775 43322057 -159006290 + AluY SINE Alu 1 282 -29 198 0 0 0 chr4 43322057 43322079 -159006268 + (CTAAA)n Simple_repeat Simple_repeat 3 24 0 1766 147 3 33 chr4 43322151 43322457 -159005890 + AluSx SINE Alu 1 297 -15 2216 86 0 32 chr4 43322457 43322771 -159005576 + AluY SINE Alu 1 304 -7 298 216 159 0 chr4 43323514 43323602 -159004745 + MER58B DNA MER1_type 231 332 -9 1879 157 3 10 chr4 43323603 43323897 -159004450 + AluSx SINE Alu 1 292 -20 286 297 150 12 chr4 43323956 43324202 -159004145 + L2 LINE L2 1998 2277 -1037 26 74 0 0 chr4 43325102 43325156 -159003191 + AT_rich Low_complexity Low_complexity 1 54 0 1387 145 63 0 chr4 43326037 43326258 -159002089 + AluJb SINE Alu 73 307 -5 207 0 0 0 chr4 43329231 43329254 -158999093 + (TGAA)n Simple_repeat Simple_repeat 4 26 0 254 211 213 43 chr4 43331242 43331386 -158996961 + MIR SINE MIR 40 204 -58 1843 132 7 7 chr4 43331829 43332102 -158996245 + AluSx SINE Alu 1 273 -39 833 190 25 12 chr4 43332342 43332505 -158995842 + FRAM SINE Alu 6 170 -6 2295 94 0 17 chr4 43332515 43332813 -158995534 + AluSg SINE Alu 3 295 -15 2042 95 20 34 chr4 43332816 43333110 -158995237 + AluSq SINE Alu 1 290 -23 1885 119 0 43 chr4 43333575 43333711 -158994636 + AluSq SINE Alu 1 120 -193 2030 118 16 39 chr4 43333711 43334016 -158994331 + AluSx SINE Alu 1 298 -14 1885 119 0 43 chr4 43334016 43334156 -158994191 + AluSq SINE Alu 120 265 -48 1789 64 14 0 chr4 43334160 43334379 -158993968 + AluSg/x SINE Alu 75 296 -16 2197 101 0 3 chr4 43334580 43334876 -158993471 + AluSx SINE Alu 1 295 -17 1689 153 3 28 chr4 43334952 43335240 -158993107 + AluJb SINE Alu 14 294 -18 1802 88 88 8 chr4 43335482 43335777 -158992570 - AluSp SINE Alu 0 316 1 307 295 127 34 chr4 43336252 43336489 -158991858 + HAL1 LINE L1 1 259 -2248 2286 47 82 0 chr4 43336573 43336852 -158991495 + AluY SINE Alu 1 302 -9 318 229 73 9 chr4 43337322 43337431 -158990916 + HAL1 LINE L1 1451 1566 -941 1082 221 47 37 chr4 43337431 43337593 -158990754 + AluJo SINE Alu 1 169 -133 194 0 39 0 chr4 43337593 43337619 -158990728 + (CAAAA)n Simple_repeat Simple_repeat 1 27 0 1082 221 47 37 chr4 43337619 43337755 -158990592 + AluJo SINE Alu 169 302 0 523 267 136 62 chr4 43337777 43338151 -158990196 + HAL1 LINE L1 1632 2033 -474 737 35 0 0 chr4 43338169 43338256 -158990091 + L1PA4 LINE L1 6066 6152 -3 2311 76 0 3 chr4 43338409 43338697 -158989650 + AluY SINE Alu 1 287 -24 422 83 14 0 chr4 43338697 43338769 -158989578 + (TA)n Simple_repeat Simple_repeat 1 73 0 953 160 64 0 chr4 43338772 43338928 -158989419 + AluJb SINE Alu 127 292 -20 728 129 60 9 chr4 43338939 43339055 -158989292 + FLAM_C SINE Alu 2 123 -20 308 141 141 39 chr4 43339074 43339152 -158989195 + L1MA9 LINE L1 6227 6312 0 613 191 17 0 chr4 43339152 43339267 -158989080 - L1MB7 LINE L1 -58 6126 6010 21 0 0 0 chr4 43339275 43339296 -158989051 + AT_rich Low_complexity Low_complexity 1 21 0 2484 54 0 7 chr4 43339464 43339760 -158988587 + AluSq SINE Alu 1 294 -19 229 260 42 0 chr4 43339768 43339864 -158988483 - L1MC4 LINE L1 -1339 6703 6604 1784 179 3 3 chr4 43339930 43340227 -158988120 + AluJb SINE Alu 1 297 -15 1432 171 9 65 chr4 43340474 43340795 -158987552 + AluJb SINE Alu 1 303 -9 243 195 0 0 chr4 43340849 43340890 -158987457 + HAL1 LINE L1 794 834 -1673 1308 153 0 26 chr4 43340915 43341144 -158987203 + AluJb SINE Alu 82 304 -8 1742 97 4 13 chr4 43341242 43341479 -158986868 + AluSg SINE Alu 1 235 -75 1383 183 18 5 chr4 43341598 43341822 -158986525 + AluSc SINE Alu 64 290 -19 1979 130 10 0 chr4 43341943 43342235 -158986112 - AluSx SINE Alu 0 312 18 664 161 0 0 chr4 43342247 43342340 -158986007 - AluS SINE Alu -213 99 7 2147 118 0 16 chr4 43342423 43342736 -158985611 - AluSc SINE Alu -1 308 1 24 0 0 0 chr4 43342736 43342760 -158985587 + AT_rich Low_complexity Low_complexity 1 24 0 2229 88 0 17 chr4 43342764 43343059 -158985288 - AluSp SINE Alu -23 290 1 1871 127 14 3 chr4 43343061 43343353 -158984994 - AluSq SINE Alu -18 295 1 2097 128 3 0 chr4 43343415 43343711 -158984636 - AluSx SINE Alu -9 303 7 2203 102 0 13 chr4 43343725 43344028 -158984319 - AluY SINE Alu -12 299 1 1701 178 40 3 chr4 43344065 43344363 -158983984 + AluJo SINE Alu 1 309 -3 361 170 28 102 chr4 43344411 43344540 -158983807 + FRAM SINE Alu 71 157 -9 1656 112 0 125 chr4 43344546 43344658 -158983689 + AluSx SINE Alu 25 149 -305 2393 94 7 0 chr4 43344658 43344967 -158983380 + AluSq SINE Alu 1 311 -2 1656 112 0 125 chr4 43344967 43345321 -158983026 + AluSx SINE Alu 149 454 0 210 71 0 0 chr4 43345321 43345349 -158982998 + (GGAA)n Simple_repeat Simple_repeat 3 30 0 2176 83 41 10 chr4 43345360 43345650 -158982697 + AluSp SINE Alu 1 299 -14 2310 86 10 7 chr4 43345664 43345966 -158982381 + AluSq SINE Alu 7 309 -4 1218 116 29 0 chr4 43345966 43346138 -158982209 + AluSp SINE Alu 137 313 0 227 30 0 30 chr4 43346142 43346175 -158982172 + (GAAA)n Simple_repeat Simple_repeat 3 34 0 664 196 108 39 chr4 43346495 43346699 -158981648 - MIR SINE MIR -11 251 34 1787 106 89 32 chr4 43346714 43346996 -158981351 - AluSq SINE Alu -15 298 1 2301 91 7 3 chr4 43347154 43347461 -158980886 - AluY SINE Alu -3 308 1 1847 120 62 67 chr4 43347520 43347679 -158980668 + THE1C LTR MaLR 1 159 -216 2108 134 0 0 chr4 43347679 43347986 -158980361 - AluSx SINE Alu -5 307 1 1847 120 62 67 chr4 43347986 43348200 -158980147 + THE1C LTR MaLR 159 372 -3 1823 112 89 0 chr4 43348201 43348482 -158979865 + AluSx SINE Alu 4 307 0 1338 157 5 9 chr4 43348847 43349063 -158979284 - AluJb SINE Alu -11 301 87 914 199 45 15 chr4 43349190 43349390 -158978957 - AluJo SINE Alu -3 309 104 1069 85 0 0 chr4 43349390 43349519 -158978828 + AluY SINE Alu 1 129 -182 1119 63 0 0 chr4 43349632 43349759 -158978588 - AluY SINE Alu -180 131 5 369 274 82 30 chr4 43349765 43349900 -158978447 - HAL1 LINE L1 -1130 1377 1236 2362 106 0 0 chr4 43349977 43350278 -158978069 - AluSg SINE Alu -8 302 2 794 270 155 74 chr4 43350364 43350783 -158977564 - L2 LINE L2 0 3313 2930 1377 193 38 51 chr4 43350783 43351099 -158977248 + AluJo SINE Alu 1 312 0 794 270 155 74 chr4 43351099 43351281 -158977066 - L2 LINE L2 -383 2930 2764 1953 109 41 31 chr4 43351281 43351574 -158976773 + AluSx SINE Alu 1 296 -16 794 270 155 74 chr4 43351574 43351854 -158976493 - L2 LINE L2 -549 2764 2373 2346 85 6 19 chr4 43351883 43352200 -158976147 - AluSp SINE Alu 0 313 1 1826 107 11 4 chr4 43352203 43352466 -158975881 - AluSx SINE Alu -4 308 44 * 1901 135 0 0 chr4 43352465 43352732 -158975615 - AluJb SINE Alu -2 310 44 1378 169 0 58 chr4 43352949 43353063 -158975284 - AluJo SINE Alu -66 246 127 198 0 0 0 chr4 43353063 43353085 -158975262 + (TA)n Simple_repeat Simple_repeat 1 22 0 1378 169 0 58 chr4 43353085 43353231 -158975116 - AluJo SINE Alu -185 127 1 191 138 0 0 chr4 43353240 43353269 -158975078 - MIR SINE MIR -116 146 118 2476 63 3 0 chr4 43353427 43353726 -158974621 + AluY SINE Alu 1 300 -11 2240 99 17 3 chr4 43354438 43354740 -158973607 - AluSp SINE Alu -7 306 1 1755 99 91 60 chr4 43355089 43355131 -158973216 - THE1C LTR MaLR 0 375 336 1768 66 160 0 chr4 43355131 43355412 -158972935 + AluSq SINE Alu 2 321 0 1755 99 91 60 chr4 43355412 43355732 -158972615 - THE1C LTR MaLR -39 336 1 1047 173 41 10 chr4 43355970 43356167 -158972180 - AluJb SINE Alu -18 294 92 422 143 0 0 chr4 43356484 43356547 -158971800 - Alu SINE Alu -14 298 236 2205 101 0 3 chr4 43356576 43356863 -158971484 - AluSx SINE Alu -26 286 1 2228 94 7 7 chr4 43356868 43357156 -158971191 - AluSp SINE Alu -25 288 1 1714 171 10 14 chr4 43357158 43357450 -158970897 - AluSx SINE Alu -21 291 1 612 200 157 29 chr4 43357637 43357777 -158970570 + AluJb SINE Alu 134 291 -21 23 0 0 0 chr4 43358126 43358149 -158970198 + AT_rich Low_complexity Low_complexity 1 23 0 25 51 0 0 chr4 43359730 43359769 -158968578 + AT_rich Low_complexity Low_complexity 1 39 0 1486 153 19 88 chr4 43360743 43361063 -158967284 - AluJo SINE Alu -13 299 2 2179 93 0 4 chr4 43361632 43361955 -158966392 - AluSc SINE Alu 0 322 1 2075 121 10 0 chr4 43362177 43362467 -158965880 - AluSg SINE Alu -17 293 1 2094 138 7 0 chr4 43364539 43364835 -158963512 + AluSg SINE Alu 1 298 -12 2414 87 0 6 chr4 43364840 43365152 -158963195 + AluY SINE Alu 1 310 -1 956 186 0 23 chr4 43365387 43365559 -158962788 - AluJo SINE Alu -46 266 99 2163 118 3 10 chr4 43365583 43365888 -158962459 - AluSx SINE Alu -9 303 1 1208 165 46 42 chr4 43366065 43366302 -158962045 + AluJo SINE Alu 51 288 -24 1819 118 20 106 chr4 43366311 43366659 -158961688 + AluYb8 SINE Alu 1 318 0 1120 92 18 0 chr4 43366660 43366824 -158961523 + HSMAR2 DNA Mariner 154 320 -982 1441 189 7 33 chr4 43366840 43367115 -158961232 - AluJb SINE Alu -32 280 13 2331 135 53 5 chr4 43367126 43367505 -158960842 + HSMAR2 DNA Mariner 318 714 -588 647 165 241 0 chr4 43367505 43367638 -158960709 + AluJb SINE Alu 134 298 -14 3816 103 31 18 chr4 43367638 43368211 -158960136 + HSMAR2 DNA Mariner 715 1295 -7 484 182 20 0 chr4 43368219 43368318 -158960029 - L1MB3 LINE L1 -85 6098 5998 394 191 138 21 chr4 43368321 43368415 -158959932 - AluJb SINE Alu -81 221 117 1646 131 120 22 chr4 43368415 43368682 -158959665 - AluSx SINE Alu -19 293 1 2238 115 0 0 chr4 43368955 43369260 -158959087 - AluSx SINE Alu -7 305 1 337 256 26 51 chr4 43369493 43369610 -158958737 - MIR SINE MIR 0 262 149 1943 101 0 89 chr4 43369874 43370201 -158958146 - AluSx SINE Alu -14 298 1 2138 97 0 72 chr4 43370248 43370569 -158957778 - AluSx SINE Alu -14 298 1 207 298 274 0 chr4 43371786 43371870 -158956477 + L2 LINE L2 3157 3263 -9 1843 164 0 3 chr4 43371877 43372164 -158956183 + AluJb SINE Alu 1 286 -26 1553 91 5 0 chr4 43372175 43372373 -158955974 + AluSp SINE Alu 1 199 -114 404 197 0 0 chr4 43372373 43372439 -158955908 + AluSp SINE Alu 231 296 -17 2160 106 3 0 chr4 43372727 43373011 -158955336 + AluSg SINE Alu 1 285 -25 283 277 39 69 chr4 43373220 43373273 -158955074 - MIR SINE MIR -78 184 131 2162 70 16 0 chr4 43373273 43373568 -158954779 + AluSg SINE Alu 23 321 0 283 277 39 69 chr4 43373568 43373643 -158954704 - MIR SINE MIR -131 131 59 180 0 0 0 chr4 43373742 43373762 -158954585 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 541 84 0 0 chr4 43373803 43373874 -158954473 + AluS SINE Alu 14 84 -229 1904 124 0 0 chr4 43373874 43374133 -158954214 - AluSx SINE Alu -53 259 1 303 134 239 30 chr4 43374133 43374200 -158954147 - AluSc SINE Alu -119 180 100 1894 138 4 7 chr4 43374216 43374492 -158953855 - AluSx SINE Alu -37 275 1 2231 102 3 0 chr4 43374589 43374874 -158953473 - AluSg SINE Alu -24 286 1 1228 138 5 0 chr4 43374951 43375139 -158953208 - AluSg/x SINE Alu -13 299 111 680 154 7 60 chr4 43376058 43376207 -158952140 + L1MA5A LINE L1 6145 6285 -12 261 0 0 0 chr4 43376347 43376376 -158951971 + (TA)n Simple_repeat Simple_repeat 1 29 0 579 179 104 60 chr4 43376381 43376515 -158951832 - FRAM SINE Alu -30 146 7 813 193 16 128 chr4 43376530 43376773 -158951574 - AluJo SINE Alu -95 217 2 1408 164 109 8 chr4 43376889 43377145 -158951202 + AluSg SINE Alu 1 282 -28 2075 121 10 0 chr4 43377422 43377712 -158950635 + AluSg SINE Alu 1 293 -17 2439 87 0 10 chr4 43377934 43378243 -158950104 + AluSq SINE Alu 1 306 -7 1579 184 42 3 chr4 43378673 43378956 -158949391 + AluSx SINE Alu 1 294 -18 198 103 0 0 chr4 43379624 43379653 -158948694 + (A)n Simple_repeat Simple_repeat 1 29 0 1917 127 10 20 chr4 43379951 43380243 -158948104 + AluSq SINE Alu 1 289 -24 31 68 0 0 chr4 43380480 43380539 -158947808 + AT_rich Low_complexity Low_complexity 1 59 0 1561 143 68 11 chr4 43381065 43381344 -158947003 + AluJb SINE Alu 1 295 -17 2044 145 0 62 chr4 43381555 43381913 -158946434 + MER1B DNA MER1_type 2 337 0 1383 175 91 29 chr4 43383647 43383729 -158944618 + AluJo SINE Alu 1 76 -236 2426 80 3 3 chr4 43383729 43384030 -158944317 + AluY SINE Alu 1 301 -10 1383 175 91 29 chr4 43384030 43384221 -158944126 + AluJo SINE Alu 76 291 -21 345 276 98 62 chr4 43384910 43385031 -158943316 - MIR SINE MIR -5 257 124 1481 200 44 0 chr4 43385031 43385326 -158943021 - AluJo SINE Alu -4 308 1 345 276 98 62 chr4 43385326 43385413 -158942934 - MIR SINE MIR -138 124 42 302 351 145 21 chr4 43386132 43386691 -158941656 + L2 LINE L2 189 816 -2498 798 181 9 126 chr4 43386726 43386941 -158941406 - AluJo SINE Alu -84 228 39 26 0 0 0 chr4 43387101 43387127 -158941220 + AT_rich Low_complexity Low_complexity 1 26 0 225 303 181 13 chr4 43387476 43387631 -158940716 + L2 LINE L2 1739 1919 -1395 218 226 226 92 chr4 43387696 43387763 -158940584 + MIR SINE MIR 71 128 -134 2196 122 0 3 chr4 43387763 43388067 -158940280 + AluSx SINE Alu 7 309 -3 218 226 226 92 chr4 43388067 43388163 -158940184 + MIR SINE MIR 128 256 -6 195 276 81 57 chr4 43388430 43388553 -158939794 + L2 LINE L2 3184 3309 -4 3915 244 85 34 chr4 43388949 43390269 -158938078 + L1M4 LINE L1 836 2087 -4557 2364 85 0 0 chr4 43390269 43390582 -158937765 + AluSx SINE Alu 1 313 0 3915 244 85 34 chr4 43390582 43390806 -158937541 + L1M4 LINE L1 2087 2298 -4346 2616 68 0 0 chr4 43390806 43391113 -158937234 + AluY SINE Alu 1 307 -4 3915 244 85 34 chr4 43391113 43391563 -158936784 + L1M4 LINE L1 2298 3059 -3585 831 114 7 57 chr4 43391565 43391705 -158936642 - FLAM_C SINE Alu 0 133 1 2464 221 111 42 chr4 43391705 43391784 -158936563 + L1M4 LINE L1 4899 4971 -1673 212 75 0 25 chr4 43391784 43391824 -158936523 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 2464 221 111 42 chr4 43391824 43392363 -158935984 + L1M4 LINE L1 4971 5600 -1044 1812 112 0 4 chr4 43392363 43392605 -158935742 - AluSq SINE Alu -17 296 56 2464 221 111 42 chr4 43392605 43392876 -158935471 + L1M4 LINE L1 5600 5851 -793 251 178 41 14 chr4 43392873 43392946 -158935401 + L1MB3 LINE L1 6109 6183 0 * 748 194 22 0 chr4 43393038 43393177 -158935170 - FRAM SINE Alu -31 145 4 271 125 0 0 chr4 43393647 43393687 -158934660 + L1MA4 LINE L1 5554 5593 -575 911 159 0 0 chr4 43393687 43393825 -158934522 + FLAM_C SINE Alu 1 138 -5 2361 148 6 59 chr4 43393825 43393917 -158934430 + L1MA4 LINE L1 5585 5680 -620 1858 169 0 6 chr4 43393917 43394230 -158934117 + AluSx SINE Alu 1 311 -1 2361 148 6 59 chr4 43394230 43394523 -158933824 + L1MA4 LINE L1 5680 5987 -313 1920 148 20 7 chr4 43394523 43394827 -158933520 + AluJo SINE Alu 1 308 -4 2361 148 6 59 chr4 43394827 43394915 -158933432 + L1MA4 LINE L1 5987 6007 -293 1903 127 21 17 chr4 43394915 43395206 -158933141 + AluSg SINE Alu 2 293 -17 2361 148 6 59 chr4 43395206 43395324 -158933023 + L1MA4 LINE L1 6007 6130 -170 500 165 11 11 chr4 43395340 43395431 -158932916 - FRAM SINE Alu -23 153 63 574 164 0 0 chr4 43395431 43395535 -158932812 + L1MA4 LINE L1 6185 6288 -12 28 29 0 0 chr4 43395862 43395897 -158932450 + AT_rich Low_complexity Low_complexity 1 35 0 2288 114 0 3 chr4 43397577 43397883 -158930464 + AluSc SINE Alu 1 305 -4 274 232 49 24 chr4 43398450 43398532 -158929815 - MIR SINE MIR -2 260 177 345 311 142 16 chr4 43398635 43398944 -158929403 - L1ME LINE L1 -388 5733 5386 640 154 106 0 chr4 43399141 43399245 -158929102 + FLAM_A SINE Alu 4 118 -15 23 0 0 0 chr4 43399249 43399272 -158929075 + AT_rich Low_complexity Low_complexity 1 23 0 1462 153 110 4 chr4 43399294 43399530 -158928817 - AluSx SINE Alu -51 261 1 2279 103 0 13 chr4 43399834 43400146 -158928201 - AluSg SINE Alu -2 308 1 254 309 106 0 chr4 43400217 43400311 -158928036 + L2 LINE L2 3202 3305 -8 469 250 48 24 chr4 43400869 43401037 -158927310 - MIR SINE MIR 0 262 91 1836 123 0 85 chr4 43401140 43401458 -158926889 + AluSx SINE Alu 1 291 -21 270 0 0 0 chr4 43401463 43401493 -158926854 + (CA)n Simple_repeat Simple_repeat 2 31 0 1489 126 11 101 chr4 43401909 43402061 -158926286 - AluJo SINE Alu -43 269 152 1985 147 0 0 chr4 43402061 43402346 -158926001 - AluSx SINE Alu -27 285 1 1489 126 11 101 chr4 43402346 43402471 -158925876 - AluJo SINE Alu -160 152 17 713 198 0 0 chr4 43402907 43403023 -158925324 + FLAM_C SINE Alu 2 117 -16 1285 178 57 70 chr4 43403310 43403543 -158924804 + L1MB4 LINE L1 4697 4931 -1215 1956 155 0 7 chr4 43403543 43403853 -158924494 + AluSx SINE Alu 1 308 -4 1285 178 57 70 chr4 43403853 43404107 -158924240 + L1MB4 LINE L1 4931 5332 -814 1207 166 0 10 chr4 43404107 43404333 -158924014 + AluJb SINE Alu 86 309 0 1645 176 117 28 chr4 43404341 43405018 -158923329 + L1MB4 LINE L1 5323 6180 0 2314 97 7 7 chr4 43405409 43405719 -158922628 - AluSq SINE Alu -3 310 1 1257 112 6 0 chr4 43405886 43406056 -158922291 - AluSq SINE Alu -10 303 133 1886 115 49 7 chr4 43406095 43406382 -158921965 + AluSx SINE Alu 1 299 -13 22 0 0 0 chr4 43406552 43406574 -158921773 + AT_rich Low_complexity Low_complexity 1 22 0 1759 200 3 3 chr4 43407475 43407780 -158920567 + AluJo SINE Alu 1 305 -7 277 346 0 0 chr4 43407819 43407900 -158920447 - L2 LINE L2 -49 3264 3184 614 312 55 9 chr4 43408630 43408848 -158919499 - MIR SINE MIR -27 235 8 248 162 44 0 chr4 43409056 43409124 -158919223 + L1ME4a LINE L1 6050 6120 -1 185 149 128 43 chr4 43409941 43409988 -158918359 + L2 LINE L2 3175 3225 -88 276 214 18 0 chr4 43410975 43411031 -158917316 + MLT1J LTR MaLR 86 142 -369 1442 158 139 8 chr4 43411352 43411618 -158916729 - AluJo SINE Alu -11 301 1 2395 79 0 7 chr4 43412037 43412340 -158916007 + AluY SINE Alu 1 301 -10 2155 108 7 0 chr4 43412469 43412765 -158915582 - AluSc SINE Alu -11 298 1 29 47 0 0 chr4 43413249 43413292 -158915055 + AT_rich Low_complexity Low_complexity 1 43 0 3821 132 38 29 chr4 43414399 43415132 -158913215 - L1MA5A LINE L1 -10 6287 5548 827 189 82 25 chr4 43415271 43415514 -158912833 - L1MB8 LINE L1 -16 6162 5906 1791 152 38 3 chr4 43415517 43415832 -158912515 + THE1B LTR MaLR 3 328 -36 277 136 0 0 chr4 43415821 43415889 -158912458 + Alu SINE Alu 250 317 0 * 505 193 181 0 chr4 43415902 43416096 -158912251 - L1MA5A LINE L1 -742 5424 5205 265 340 31 10 chr4 43416319 43416416 -158911931 - L2 LINE L2 -6 3266 3168 30 0 0 0 chr4 43416521 43416551 -158911796 + AT_rich Low_complexity Low_complexity 1 30 0 2205 96 4 0 chr4 43416924 43417204 -158911143 - AluSx SINE Alu -31 281 1 1628 197 20 0 chr4 43417354 43417653 -158910694 - AluJb SINE Alu -7 305 1 2167 105 21 0 chr4 43417664 43417950 -158910397 - AluSg SINE Alu -18 292 1 1740 142 64 10 chr4 43418703 43418999 -158909348 + AluSx SINE Alu 1 312 0 204 125 0 0 chr4 43419010 43419042 -158909305 + (GAGAA)n Simple_repeat Simple_repeat 4 35 0 1410 183 58 17 chr4 43419047 43419342 -158909005 + AluJb SINE Alu 6 312 0 1694 143 0 117 chr4 43419356 43419698 -158908649 + AluJb SINE Alu 1 302 0 5350 180 31 24 chr4 43419707 43420155 -158908192 - L1MA5A LINE L1 -1158 4988 4544 2201 108 3 0 chr4 43420155 43420450 -158907897 + AluSp SINE Alu 1 296 -17 5350 180 31 24 chr4 43420450 43421275 -158907072 - L1MA5A LINE L1 -1602 4544 3707 1125 214 57 9 chr4 43421273 43421609 -158906738 + L1MA4 LINE L1 4955 5306 -840 * 233 143 54 0 chr4 43421609 43421665 -158906682 + A-rich Low_complexity Low_complexity 5 63 0 2203 88 24 0 chr4 43421688 43421984 -158906363 + AluSc SINE Alu 1 303 -6 3285 164 95 13 chr4 43421991 43422740 -158905607 + L1MA4 LINE L1 5471 6280 -20 1574 204 39 34 chr4 43422740 43423128 -158905219 + MLT1B LTR MaLR 1 390 0 2171 87 11 3 chr4 43424345 43424631 -158903716 - AluSx SINE Alu -18 294 7 1723 163 0 42 chr4 43424851 43425158 -158903189 + AluJo SINE Alu 13 306 -6 2360 86 0 22 chr4 43425161 43425476 -158902871 + AluY SINE Alu 1 308 -3 2121 143 82 86 chr4 43425482 43425956 -158902391 + Tigger3(Golem) DNA MER2_type 2507 2980 -49 2169 57 96 0 chr4 43425956 43426238 -158902109 - AluY SINE Alu -2 309 1 2121 143 82 86 chr4 43426238 43426287 -158902060 + Tigger3(Golem) DNA MER2_type 2980 3028 -1 2079 148 0 3 chr4 43426758 43427055 -158901292 - AluJb SINE Alu -12 300 5 236 146 0 0 chr4 43427207 43427248 -158901099 + Alu SINE Alu 1 41 -261 216 209 209 22 chr4 43427361 43427452 -158900895 + MIR SINE MIR 59 166 -96 249 268 189 55 chr4 43428095 43428222 -158900125 + MIR SINE MIR 47 190 -72 287 247 0 62 chr4 43428657 43428738 -158899609 - L2 LINE L2 -220 3052 2977 642 115 10 10 chr4 43428930 43429026 -158899321 - AluS SINE Alu -216 96 1 1487 174 71 20 chr4 43429063 43429357 -158898990 - AluSx SINE Alu -3 309 1 2091 72 11 0 chr4 43429523 43429788 -158898559 - AluSp SINE Alu -16 297 30 584 213 55 6 chr4 43430249 43430432 -158897915 + L1M4 LINE L1 2896 3087 -3059 571 125 0 0 chr4 43430478 43430558 -158897789 + AluJ/FLAM SINE Alu 1 80 -232 1053 153 10 49 chr4 43430560 43430763 -158897584 - AluJb SINE Alu -31 281 87 1727 261 65 4 chr4 43430776 43431270 -158897077 - MLT1F LTR MaLR -8 534 11 2123 139 0 3 chr4 43431344 43431646 -158896701 - AluSx SINE Alu -11 301 1 2002 92 50 7 chr4 43432017 43432300 -158896047 + AluSg SINE Alu 2 296 -14 2045 136 0 0 chr4 43432339 43432626 -158895721 + AluSq SINE Alu 1 287 -26 889 200 7 0 chr4 43432751 43432906 -158895441 + FRAM SINE Alu 9 164 -12 237 65 0 0 chr4 43434055 43434086 -158894261 + (T)n Simple_repeat Simple_repeat 1 31 0 1469 191 144 62 chr4 43434260 43434576 -158893771 - L1M4 LINE L1 -748 5398 5109 231 36 0 0 chr4 43434576 43434604 -158893743 + (ATTG)n Simple_repeat Simple_repeat 1 28 0 1644 114 138 0 chr4 43434605 43434851 -158893496 - AluSx SINE Alu -32 280 1 1469 191 144 62 chr4 43434851 43435172 -158893175 - L1M4 LINE L1 -1036 5110 4707 909 232 65 4 chr4 43435218 43435494 -158892853 + L1ME LINE L1 5526 5818 -348 280 245 71 31 chr4 43435534 43435632 -158892715 + L1MA10 LINE L1 6170 6271 -63 778 210 109 16 chr4 43435643 43435900 -158892447 - MER21B LTR ERV1 -109 754 474 1697 132 43 29 chr4 43435907 43436188 -158892159 - AluSx SINE Alu -27 285 1 325 237 13 13 chr4 43436233 43436309 -158892038 + 5S rRNA rRNA 44 119 -2 744 213 209 4 chr4 43436552 43436782 -158891565 - MER21B LTR ERV1 -566 297 21 1587 182 40 24 chr4 43436864 43437160 -158891187 - AluJb SINE Alu -11 301 1 269 256 111 17 chr4 43437186 43437303 -158891044 + L1ME LINE L1 5514 5641 -521 2065 163 19 11 chr4 43437350 43437725 -158890622 + MER57A LTR ERV1 8 385 -18 2289 80 3 0 chr4 43437726 43438013 -158890334 + AluSx SINE Alu 1 288 -24 2265 100 0 0 chr4 43438143 43438432 -158889915 + AluSc SINE Alu 1 289 -20 540 214 43 8 chr4 43438522 43438639 -158889708 + AluJo SINE Alu 121 241 -71 1712 164 10 27 chr4 43438645 43438944 -158889403 + AluJo SINE Alu 10 303 -9 2019 143 3 10 chr4 43438967 43439281 -158889066 + AluSx SINE Alu 1 312 0 314 211 56 0 chr4 43439336 43439407 -158888940 + AluJo SINE Alu 226 300 -2 1437 164 148 0 chr4 43439430 43439693 -158888654 + AluSx SINE Alu 1 302 0 195 315 37 65 chr4 43440092 43440115 -158888232 - MIR SINE MIR -73 135 113 1531 151 49 66 chr4 43440115 43440419 -158887928 - AluJb SINE Alu -13 299 1 195 315 37 65 chr4 43440419 43440503 -158887844 - MIR SINE MIR -95 113 31 282 242 154 77 chr4 43440549 43440731 -158887616 + L2 LINE L2 3117 3312 -1 685 211 6 42 chr4 43441227 43441393 -158886954 + FRAM SINE Alu 3 162 -4 1290 215 96 0 chr4 43441909 43442170 -158886177 - AluJo SINE Alu -21 291 6 375 197 0 0 chr4 43442302 43442373 -158885974 + FRAM SINE Alu 25 95 -71 498 75 0 0 chr4 43442573 43442640 -158885707 + (CA)n Simple_repeat Simple_repeat 2 68 0 2015 112 9 67 chr4 43442953 43443284 -158885063 + AluSx SINE Alu 1 312 0 2369 79 0 7 chr4 43443346 43443649 -158884698 + AluY SINE Alu 1 301 -10 2270 98 3 3 chr4 43443861 43444168 -158884179 + AluSp SINE Alu 1 307 -6 2529 50 7 3 chr4 43444770 43445073 -158883274 + AluY SINE Alu 1 304 -7 2176 123 0 16 chr4 43445511 43445828 -158882519 + AluSx SINE Alu 1 312 0 428 185 74 62 chr4 43446084 43446225 -158882122 + L1 LINE L1 3190 3335 -2811 2001 141 10 7 chr4 43446225 43446529 -158881818 + AluSx SINE Alu 1 305 -7 428 185 74 62 chr4 43446529 43446549 -158881798 + L1 LINE L1 3335 3353 -2793 591 201 0 37 chr4 43446551 43446685 -158881662 + FLAM_C SINE Alu 1 129 -14 1740 162 30 3 chr4 43446764 43447066 -158881281 + AluSx SINE Alu 1 310 -2 1512 122 13 13 chr4 43447103 43447333 -158881014 + MER30 DNA MER1_type 1 230 0 796 173 89 0 chr4 43447357 43447536 -158880811 - MSTB2 LTR MaLR -262 195 1 1037 216 166 12 chr4 43447562 43447821 -158880526 + AluJo SINE Alu 2 300 -2 373 124 25 0 chr4 43447822 43447904 -158880443 + L1P1 LINE L1 5653 5741 -414 2268 88 0 26 chr4 43447904 43448210 -158880137 - AluSg1 SINE Alu -9 300 3 2139 135 0 0 chr4 43448211 43448514 -158879833 - AluSx SINE Alu -9 303 1 28 95 0 0 chr4 43448759 43448843 -158879504 + AT_rich Low_complexity Low_complexity 1 84 0 2426 73 13 0 chr4 43449064 43449364 -158878983 + AluSp SINE Alu 1 304 -9 248 301 84 38 chr4 43450241 43450480 -158877867 + MARNA DNA Mariner 307 556 -30 1231 187 0 0 chr4 43451458 43451667 -158876680 + AluJo SINE Alu 90 298 -14 2604 77 50 79 chr4 43451981 43452346 -158876001 + MLT2A1 LTR ERVL 1 375 -69 315 0 0 0 chr4 43452346 43452381 -158875966 + (TA)n Simple_repeat Simple_repeat 1 35 0 2604 77 50 79 chr4 43452381 43452431 -158875916 + MLT2A1 LTR ERVL 375 404 -40 180 0 0 0 chr4 43452431 43452451 -158875896 + (TG)n Simple_repeat Simple_repeat 2 21 0 2604 77 50 79 chr4 43452451 43452491 -158875856 + MLT2A1 LTR ERVL 404 444 0 931 220 0 0 chr4 43452561 43452734 -158875613 - AluJb SINE Alu -7 305 133 1348 200 4 8 chr4 43452857 43453107 -158875240 + AluJb SINE Alu 50 298 -14 413 136 0 45 chr4 43453108 43453196 -158875151 - Tigger3(Golem) DNA MER2_type -669 2360 2277 353 200 0 148 chr4 43453187 43453229 -158875118 - Tigger3(Golem) DNA MER2_type -2921 108 61 * 688 113 19 0 chr4 43453229 43453335 -158875012 - L1PA7 LINE L1 0 6154 6047 353 200 0 148 chr4 43453335 43453407 -158874940 - Tigger3(Golem) DNA MER2_type -2968 61 11 1617 137 4 4 chr4 43453440 43453674 -158874673 + AluSx SINE Alu 3 236 -76 958 195 61 17 chr4 43453675 43453723 -158874624 + AluJo SINE Alu 60 104 -208 2059 149 7 0 chr4 43453723 43454024 -158874323 - AluSx SINE Alu -9 303 1 958 195 61 17 chr4 43454024 43454206 -158874141 + AluJo SINE Alu 104 300 -12 373 284 78 0 chr4 43455724 43455865 -158872482 + MER58A DNA MER1_type 42 193 -31 1704 190 0 16 chr4 43455889 43456200 -158872147 + AluJb SINE Alu 1 306 -6 207 211 0 0 chr4 43457922 43457960 -158870387 + T-rich Low_complexity Low_complexity 1 38 0 1601 167 0 11 chr4 43458067 43458330 -158870017 - AluSx SINE Alu -52 260 1 582 310 84 10 chr4 43459102 43459305 -158869042 - MIR SINE MIR -21 241 24 22 88 0 0 chr4 43459426 43459483 -158868864 + AT_rich Low_complexity Low_complexity 1 57 0 2417 45 21 0 chr4 43459846 43460136 -158868211 - AluY SINE Alu -15 296 1 653 173 0 18 chr4 43460202 43460312 -158868035 - FLAM_A SINE Alu -14 128 21 500 155 0 0 chr4 43460521 43460605 -158867742 + AluJ/FLAM SINE Alu 1 84 -228 465 257 65 65 chr4 43460700 43460780 -158867567 + HAL1 LINE L1 759 838 -1669 2279 111 0 0 chr4 43460780 43461086 -158867261 + AluSx SINE Alu 1 306 -6 465 257 65 65 chr4 43461086 43461266 -158867081 + HAL1 LINE L1 837 1019 -1488 316 235 17 9 chr4 43461281 43461396 -158866951 + GA-rich Low_complexity Low_complexity 2 117 0 201 152 0 0 chr4 43461435 43461468 -158866879 + A-rich Low_complexity Low_complexity 2 34 0 284 233 44 0 chr4 43461504 43461594 -158866753 + HAL1 LINE L1 1163 1256 -1251 1997 123 0 27 chr4 43461594 43461887 -158866460 + AluJb SINE Alu 14 298 -14 649 244 0 0 chr4 43462139 43462262 -158866085 + FLAM_A SINE Alu 1 123 -10 201 158 0 0 chr4 43462420 43462458 -158865889 + A-rich Low_complexity Low_complexity 1 38 0 2680 42 0 0 chr4 43463078 43463387 -158864960 - AluY SINE Alu -1 310 2 1404 167 7 57 chr4 43464244 43464599 -158863748 + AluJb SINE Alu 1 340 0 1688 168 7 23 chr4 43464614 43464923 -158863424 - AluSx SINE Alu -4 308 5 296 230 92 35 chr4 43465441 43465528 -158862819 + AluJo SINE Alu 122 213 -89 805 178 0 0 chr4 43466217 43466352 -158861995 + AluJo SINE Alu 3 137 -175 1489 196 21 14 chr4 43466353 43466639 -158861708 + AluJo SINE Alu 4 291 -21 1156 121 0 6 chr4 43466749 43466914 -158861433 + AluSg/x SINE Alu 133 296 -14 2491 59 0 7 chr4 43467053 43467357 -158860990 + AluY SINE Alu 1 302 -9 1858 137 31 7 chr4 43468587 43468879 -158859468 - AluSx SINE Alu -13 299 1 2169 110 10 3 chr4 43469659 43469959 -158858388 - AluSg SINE Alu -8 302 1 1749 178 3 20 chr4 43470541 43470839 -158857508 - AluJo SINE Alu -19 293 1 1954 152 0 29 chr4 43470842 43471157 -158857190 - AluJb SINE Alu -6 306 1 1085 174 181 15 chr4 43471450 43471709 -158856638 + AluJo SINE Alu 1 302 0 308 204 0 0 chr4 43471711 43471765 -158856582 + AluJo/FRAM SINE Alu 178 231 -71 2134 132 7 0 chr4 43472081 43472385 -158855962 + AluSp SINE Alu 1 306 -7 22 0 0 0 chr4 43472502 43472524 -158855823 + AT_rich Low_complexity Low_complexity 1 22 0 29 28 0 0 chr4 43472742 43472778 -158855569 + AT_rich Low_complexity Low_complexity 1 36 0 1397 154 0 21 chr4 43473162 43473395 -158854952 + AluJo SINE Alu 76 303 -9 1996 135 4 0 chr4 43473765 43474046 -158854301 + AluSx SINE Alu 1 282 -30 2324 83 0 0 chr4 43474557 43474846 -158853501 + AluY SINE Alu 1 289 -22 25 0 0 0 chr4 43475122 43475147 -158853200 + AT_rich Low_complexity Low_complexity 1 25 0 28 0 0 0 chr4 43476151 43476179 -158852168 + AT_rich Low_complexity Low_complexity 1 28 0 1160 227 0 4 chr4 43476314 43476539 -158851808 - MER58A DNA MER1_type 0 224 1 1703 160 0 56 chr4 43476647 43476953 -158851394 + AluJo SINE Alu 1 289 -23 21 36 0 0 chr4 43477077 43477105 -158851242 + AT_rich Low_complexity Low_complexity 1 28 0 207 261 0 0 chr4 43477947 43477993 -158850354 + GA-rich Low_complexity Low_complexity 2 47 0 2097 132 3 6 chr4 43478242 43478553 -158849794 + AluSx SINE Alu 1 310 -2 1047 146 87 11 chr4 43478649 43478834 -158849513 + AluJb SINE Alu 87 285 -27 312 27 0 0 chr4 43478834 43478871 -158849476 + (CA)n Simple_repeat Simple_repeat 2 38 0 395 193 26 79 chr4 43479445 43479559 -158848788 + MLT1H LTR MaLR 442 549 0 255 259 0 0 chr4 43479766 43479824 -158848523 + Charlie5 DNA MER1_type 2 59 -2553 473 127 36 27 chr4 43479833 43479943 -158848404 + Charlie5 DNA MER1_type 2430 2540 -72 2163 137 0 0 chr4 43480025 43480325 -158848022 + AluSx SINE Alu 1 300 -12 180 97 0 0 chr4 43480365 43480396 -158847951 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 283 300 20 60 chr4 43480458 43480558 -158847789 + MIR3 SINE MIR 90 185 -23 735 183 9 113 chr4 43481145 43481232 -158847115 - MER2 DNA MER2_type -138 207 112 2032 146 10 0 chr4 43481232 43481533 -158846814 + AluSx SINE Alu 1 304 -8 735 183 9 113 chr4 43481533 43481674 -158846673 - MER2 DNA MER2_type -233 112 3 1756 131 25 135 chr4 43481750 43481913 -158846434 - LTR24C LTR ERV1 0 635 456 1806 125 90 0 chr4 43481913 43482192 -158846155 - AluSx SINE Alu -8 304 1 2141 106 3 3 chr4 43482195 43482488 -158845859 - AluSx SINE Alu -19 293 1 783 181 0 15 chr4 43482490 43482623 -158845724 - AluJo/FLAM SINE Alu -171 131 1 1756 131 25 135 chr4 43482623 43482768 -158845579 - LTR24C LTR ERV1 -182 453 294 2519 65 0 10 chr4 43482768 43483078 -158845269 - AluY SINE Alu -4 307 1 1984 161 0 3 chr4 43483080 43483384 -158844963 - AluSx SINE Alu -9 303 1 1756 131 25 135 chr4 43483384 43483552 -158844795 - LTR24C LTR ERV1 -342 293 202 367 94 0 0 chr4 43483654 43483713 -158844634 + AluSq/x SINE Alu 75 124 -178 1990 131 0 20 chr4 43483718 43484016 -158844331 - AluSx SINE Alu -16 296 5 1539 188 37 24 chr4 43484024 43484322 -158844025 - AluJb SINE Alu -10 302 1 892 209 74 81 chr4 43484613 43484749 -158843598 + HsTC2 DNA Tc2 1234 1369 -529 2425 70 3 0 chr4 43484749 43485050 -158843297 + AluY SINE Alu 2 303 -8 892 209 74 81 chr4 43485050 43485179 -158843168 + HsTC2 DNA Tc2 1369 1497 -401 1893 134 3 13 chr4 43485179 43485477 -158842870 + AluSx SINE Alu 3 297 -15 892 209 74 81 chr4 43485477 43485640 -158842707 + HsTC2 DNA Tc2 1497 1836 -62 699 328 49 56 chr4 43485644 43485857 -158842490 + ERVL LTR ERVL 4559 4772 -992 2186 128 0 0 chr4 43485857 43486155 -158842192 - AluSq SINE Alu -10 303 6 699 328 49 56 chr4 43486155 43486515 -158841832 + ERVL LTR ERVL 4772 5128 -636 306 189 9 90 chr4 43486519 43486582 -158841765 - MER5C DNA MER1_type 0 324 272 1830 171 3 0 chr4 43486582 43486868 -158841479 + AluJb SINE Alu 3 289 -23 306 189 9 90 chr4 43486868 43486915 -158841432 - MER5C DNA MER1_type -52 272 223 247 222 63 16 chr4 43486951 43487014 -158841333 - MER5C DNA MER1_type -210 114 49 1787 140 0 67 chr4 43487192 43487507 -158840840 + AluJo SINE Alu 1 294 -18 1719 105 0 16 chr4 43487509 43487756 -158840591 - AluSx SINE Alu -69 243 1 201 39 0 0 chr4 43487806 43487832 -158840515 + (A)n Simple_repeat Simple_repeat 1 26 0 1518 169 17 30 chr4 43487892 43488188 -158840159 + AluJb SINE Alu 1 292 -20 318 132 91 141 chr4 43488400 43488454 -158839893 + L1MC1 LINE L1 6138 6193 -140 2043 130 10 7 chr4 43488454 43488761 -158839586 + AluSx SINE Alu 1 308 -4 318 132 91 141 chr4 43488761 43488827 -158839520 + L1MC1 LINE L1 6193 6252 -81 486 149 11 11 chr4 43488861 43488955 -158839392 + L1MC1 LINE L1 6240 6333 0 2034 128 3 22 chr4 43488968 43489280 -158839067 + AluSx SINE Alu 1 306 -6 2032 139 7 7 chr4 43489343 43489644 -158838703 + AluSx SINE Alu 1 301 -11 955 132 0 0 chr4 43489932 43490068 -158838279 + AluSq SINE Alu 146 281 -32 294 95 0 0 chr4 43490068 43490110 -158838237 + (GGAA)n Simple_repeat Simple_repeat 3 44 0 1598 109 126 18 chr4 43490110 43490395 -158837952 + LTR9 LTR ERV1 79 394 -218 558 119 0 0 chr4 43490395 43490479 -158837868 + MER30 DNA MER1_type 114 197 -33 698 197 0 0 chr4 43490711 43490828 -158837519 + AluJb SINE Alu 3 119 -193 259 146 0 0 chr4 43490843 43490884 -158837463 - L1MEd LINE L1 -5987 132 92 2009 152 7 3 chr4 43490887 43491190 -158837157 + AluSx SINE Alu 1 304 -8 1166 153 0 97 chr4 43491310 43491372 -158836975 + AluJb SINE Alu 86 152 -160 2372 95 0 0 chr4 43491372 43491677 -158836670 + AluSq SINE Alu 1 305 -8 1608 60 120 0 chr4 43491683 43491899 -158836448 + AluSc SINE Alu 54 295 -14 1166 153 0 97 chr4 43491899 43492057 -158836290 + AluJb SINE Alu 157 291 -21 865 172 64 9 chr4 43492760 43492971 -158835376 + L1ME1 LINE L1 5661 5873 -293 1802 112 22 11 chr4 43492971 43493248 -158835099 - AluSx SINE Alu -10 302 23 469 294 56 12 chr4 43493379 43493539 -158834808 - L2 LINE L2 0 3313 3147 522 100 0 0 chr4 43493569 43493639 -158834708 - Alu SINE Alu -16 295 226 928 96 0 0 chr4 43493641 43493756 -158834591 - AluSg SINE Alu -195 115 1 338 246 51 58 chr4 43494239 43494377 -158833970 + MIR3 SINE MIR 66 202 -6 1615 166 95 11 chr4 43494396 43494679 -158833668 - AluJb SINE Alu -5 307 1 2234 91 13 7 chr4 43494752 43495061 -158833286 - AluY SINE Alu 0 311 1 1921 132 10 17 chr4 43495074 43495363 -158832984 - AluSx SINE Alu -23 289 3 2380 76 0 0 chr4 43495845 43496128 -158832219 + AluSg SINE Alu 1 286 -24 195 0 39 0 chr4 43496128 43496154 -158832193 + (TAAA)n Simple_repeat Simple_repeat 2 124 0 599 159 84 0 chr4 43496163 43496270 -158832077 - FLAM_C SINE Alu -17 116 1 23 33 0 0 chr4 43496305 43496335 -158832012 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr4 43496620 43496643 -158831704 + AT_rich Low_complexity Low_complexity 1 23 0 2272 48 17 7 chr4 43497449 43497742 -158830605 + AluY SINE Alu 1 296 -15 1287 99 16 0 chr4 43498142 43498333 -158830014 - AluSp SINE Alu -5 308 115 488 227 27 8 chr4 43498433 43498617 -158829730 + L1PA15 LINE L1 5958 6143 -22 2242 78 0 3 chr4 43498617 43498937 -158829410 - AluY SINE Alu 0 319 1 488 227 27 8 chr4 43498937 43498961 -158829386 + L1PA15 LINE L1 6143 6165 0 2173 114 0 0 chr4 43499187 43499495 -158828852 - AluSg SINE Alu -2 308 1 1442 231 96 19 chr4 43499519 43499926 -158828421 - MLT1C LTR MaLR 0 467 24 474 18 0 0 chr4 43499926 43499981 -158828366 + (TG)n Simple_repeat Simple_repeat 2 56 0 1442 231 96 19 chr4 43499981 43500002 -158828345 - MLT1C LTR MaLR -443 24 6 1686 124 0 19 chr4 43500145 43500311 -158828036 - AluSg SINE Alu -13 297 136 2238 86 3 3 chr4 43500311 43500613 -158827734 - AluY SINE Alu -8 303 2 1686 124 0 19 chr4 43500613 43500711 -158827636 - AluSg SINE Alu -174 136 38 342 187 133 0 chr4 43500714 43500789 -158827558 + AluSg/x SINE Alu 86 170 -132 806 135 24 0 chr4 43500902 43501028 -158827319 + AluSc SINE Alu 119 247 -62 208 323 55 55 chr4 43501277 43501404 -158826943 + L2 LINE L2 2509 2635 -679 448 183 34 33 chr4 43501404 43501521 -158826826 - MER20 DNA MER1_type -137 82 1 207 0 0 0 chr4 43503343 43503366 -158824981 + (CCG)n Simple_repeat Simple_repeat 2 24 0 276 286 12 24 chr4 43504211 43504295 -158824052 + MER5A DNA MER1_type 2 84 -105 237 188 0 50 chr4 43504332 43504412 -158823935 + A-rich Low_complexity Low_complexity 1 76 0 207 227 0 0 chr4 43504413 43504457 -158823890 + MER5B DNA MER1_type 89 132 -46 2366 53 0 23 chr4 43505080 43505384 -158822963 - AluY SINE Alu -14 297 1 1681 112 0 23 chr4 43505547 43505806 -158822541 - AluSq SINE Alu -60 253 1 3249 119 57 16 chr4 43505826 43506332 -158822015 - MER1A DNA MER1_type 0 527 1 836 170 0 21 chr4 43506472 43506613 -158821734 - AluJo SINE Alu -173 139 2 2306 91 0 7 chr4 43507247 43507556 -158820791 - AluSx SINE Alu -5 307 1 2056 96 7 3 chr4 43507579 43507872 -158820475 - AluSq SINE Alu -19 294 1 1875 139 0 29 chr4 43507872 43508187 -158820160 - AluSx SINE Alu -3 309 3 2278 90 0 13 chr4 43508220 43508394 -158819953 - AluSq SINE Alu -6 307 137 2323 58 37 0 chr4 43508394 43508689 -158819658 - AluY SINE Alu -4 307 2 2278 90 0 13 chr4 43508689 43508825 -158819522 - AluSq SINE Alu -176 137 1 276 289 230 37 chr4 43508879 43509014 -158819333 + MIR SINE MIR 10 170 -92 2054 88 7 7 chr4 43509015 43509329 -158819018 - AluSq SINE Alu 0 314 1 1903 147 0 0 chr4 43509331 43509624 -158818723 - AluJb SINE Alu -19 293 1 1792 79 0 4 chr4 43509853 43510093 -158818254 - AluY SINE Alu 0 311 73 1018 212 0 14 chr4 43510194 43510416 -158817931 - AluJb SINE Alu -85 227 9 771 200 18 36 chr4 43510430 43510595 -158817752 - AluJb SINE Alu -17 295 134 1067 125 12 0 chr4 43510640 43510800 -158817547 + AluSg/x SINE Alu 135 296 -14 231 182 0 0 chr4 43511283 43511316 -158817031 + Alu SINE Alu 1 33 -275 293 230 14 27 chr4 43511316 43511390 -158816957 + MIR SINE MIR 188 260 -2 2058 133 0 3 chr4 43511390 43511699 -158816648 - AluSg SINE Alu -2 308 1 24 32 0 0 chr4 43511798 43511829 -158816518 + AT_rich Low_complexity Low_complexity 1 31 0 1945 151 0 0 chr4 43511979 43512278 -158816069 - AluSq SINE Alu -14 299 1 2018 95 0 7 chr4 43512359 43512669 -158815678 - AluSg SINE Alu 0 308 1 764 146 57 0 chr4 43512672 43512795 -158815552 - AluSq/x SINE Alu -181 131 2 2176 87 7 0 chr4 43513281 43513569 -158814778 - AluSq SINE Alu -13 300 11 1579 117 4 16 chr4 43513731 43513801 -158814546 + AluSg/x SINE Alu 65 134 -176 1932 131 0 13 chr4 43513801 43514113 -158814234 + AluSg SINE Alu 1 308 -2 1579 117 4 16 chr4 43514113 43514291 -158814056 + AluSg/x SINE Alu 134 310 0 1221 151 131 19 chr4 43514543 43514688 -158813659 - AluJo SINE Alu -16 296 169 2081 103 7 3 chr4 43514688 43514980 -158813367 - AluSc SINE Alu -16 293 1 1221 151 131 19 chr4 43514980 43515093 -158813254 - AluJo SINE Alu -143 169 9 226 125 0 25 chr4 43515158 43515198 -158813149 - U3 snRNA snRNA -178 39 1 1206 323 6 78 chr4 43515281 43515615 -158812732 - AluSx SINE Alu -2 310 1 1121 171 3 147 chr4 43515622 43515778 -158812569 - AluJb SINE Alu -13 289 205 1997 127 3 0 chr4 43515778 43516069 -158812278 - AluSp SINE Alu -18 295 4 1121 171 3 147 chr4 43516069 43516245 -158812102 - AluJb SINE Alu -97 205 5 2110 113 0 7 chr4 43516250 43516551 -158811796 - AluSg SINE Alu -11 299 1 2228 82 3 3 chr4 43516563 43516855 -158811492 - AluSg SINE Alu -14 296 5 388 163 0 50 chr4 43516877 43516957 -158811390 + AluS SINE Alu 226 301 0 1200 120 0 0 chr4 43516963 43517138 -158811209 + AluSg/x SINE Alu 118 292 -18 209 257 29 29 chr4 43517144 43517249 -158811098 + (CATA)n Simple_repeat Simple_repeat 2 106 0 1216 154 68 45 chr4 43517337 43517629 -158810718 - AluSx SINE Alu -13 299 1 1756 182 16 3 chr4 43517803 43518111 -158810236 + AluJo SINE Alu 1 312 0 772 209 68 0 chr4 43518112 43518275 -158810072 + AluJb SINE Alu 134 307 -5 2348 75 0 3 chr4 43518304 43518610 -158809737 - AluY SINE Alu -6 305 1 596 311 32 44 chr4 43518636 43518828 -158809519 + MIR SINE MIR 3 193 -69 1718 135 0 83 chr4 43518828 43518963 -158809384 + AluSx SINE Alu 1 146 -166 1902 117 0 58 chr4 43518963 43519289 -158809058 + AluSx SINE Alu 1 307 -5 1718 135 0 83 chr4 43519289 43519478 -158808869 + AluSx SINE Alu 146 298 -14 596 311 32 44 chr4 43519478 43519533 -158808814 + MIR SINE MIR 193 247 -15 226 236 46 75 chr4 43519542 43519716 -158808631 - L1ME4a LINE L1 -22 6099 5931 23 0 0 0 chr4 43519721 43519744 -158808603 + AT_rich Low_complexity Low_complexity 1 23 0 1256 112 0 21 chr4 43519766 43519954 -158808393 - AluJb SINE Alu -128 184 1 2294 57 0 10 chr4 43520259 43520556 -158807791 - AluY SINE Alu -17 294 1 338 240 110 10 chr4 43520571 43520671 -158807676 + LTR33 LTR ERVL 404 513 -8 310 294 138 46 chr4 43520743 43520955 -158807392 - MIR SINE MIR -3 259 32 1683 154 31 0 chr4 43520997 43521283 -158807064 + AluSx SINE Alu 6 300 -12 365 260 0 48 chr4 43521306 43521410 -158806937 - MER5A DNA MER1_type -70 119 21 1599 113 9 0 chr4 43521626 43521882 -158806465 + AluSx SINE Alu 58 315 0 23 0 0 0 chr4 43523269 43523292 -158805055 + AT_rich Low_complexity Low_complexity 1 23 0 1533 145 60 18 chr4 43523294 43523457 -158804890 - AluSg SINE Alu -16 294 113 2412 63 0 0 chr4 43523457 43523760 -158804587 - AluY SINE Alu -8 303 1 1533 145 60 18 chr4 43523760 43523878 -158804469 - AluSg SINE Alu -197 113 1 1228 157 0 24 chr4 43524032 43524078 -158804269 + AluSg/x SINE Alu 88 134 -176 2007 114 0 0 chr4 43524078 43524417 -158803930 + AluSx SINE Alu 2 340 0 1228 157 0 24 chr4 43524417 43524579 -158803768 + AluSg/x SINE Alu 134 292 -18 383 296 100 98 chr4 43524586 43524662 -158803685 - L2 LINE L2 -3 3310 3236 2245 109 0 0 chr4 43524662 43524975 -158803372 + AluSq SINE Alu 1 313 0 383 296 100 98 chr4 43524975 43525058 -158803289 - L2 LINE L2 -77 3236 3155 1725 158 0 20 chr4 43525058 43525350 -158802997 + AluJb SINE Alu 1 286 -26 383 296 100 98 chr4 43525350 43525568 -158802779 - L2 LINE L2 -158 3155 2931 1819 144 40 0 chr4 43525803 43526101 -158802246 + AluSx SINE Alu 1 310 -2 1244 175 52 4 chr4 43526118 43526423 -158801924 + AluJo SINE Alu 1 318 0 1209 99 0 0 chr4 43526424 43526586 -158801761 + AluSq SINE Alu 1 162 -151 1976 128 0 10 chr4 43526695 43526985 -158801362 + AluSx SINE Alu 7 293 -19 1132 171 201 13 chr4 43527073 43527372 -158800975 + L1M4 LINE L1 4976 5330 -816 1680 165 10 10 chr4 43527376 43527673 -158800674 + AluJo SINE Alu 1 297 -15 2109 131 3 0 chr4 43527675 43527981 -158800366 + AluSx SINE Alu 1 307 -5 324 247 24 0 chr4 43528087 43528172 -158800175 - L1MD2 LINE L1 -417 5942 5856 311 195 13 52 chr4 43528307 43528384 -158799963 + L1MC4 LINE L1 6648 6721 -1321 869 202 52 0 chr4 43528844 43529017 -158799330 - AluJb SINE Alu -13 299 118 819 164 0 0 chr4 43529248 43529376 -158798971 + FLAM_C SINE Alu 5 132 -1 1621 129 111 7 chr4 43529439 43529718 -158798629 + AluSg SINE Alu 1 308 -2 1524 183 3 13 chr4 43529843 43530144 -158798203 + AluJb SINE Alu 11 308 -4 1484 158 79 0 chr4 43530224 43530503 -158797844 + AluSx SINE Alu 1 301 -11 366 23 0 0 chr4 43530504 43530547 -158797800 + (CA)n Simple_repeat Simple_repeat 2 44 0 710 82 0 21 chr4 43530678 43530775 -158797572 - U6 snRNA snRNA 0 107 13 2210 111 0 0 chr4 43530907 43531205 -158797142 + AluSx SINE Alu 1 298 -14 1818 134 53 0 chr4 43531213 43531497 -158796850 + AluSx SINE Alu 1 299 -13 1986 88 29 0 chr4 43531873 43532145 -158796202 + AluY SINE Alu 1 280 -31 1045 167 0 0 chr4 43532161 43532335 -158796012 + AluSg/x SINE Alu 132 305 -7 911 140 37 30 chr4 43532397 43532524 -158795823 + AluSx SINE Alu 11 141 -171 1938 131 0 10 chr4 43532524 43532821 -158795526 + AluSq SINE Alu 1 294 -19 911 140 37 30 chr4 43532821 43532857 -158795490 + AluSx SINE Alu 141 175 -137 1416 184 50 14 chr4 43532914 43533191 -158795156 + AluJb SINE Alu 1 287 -25 515 203 8 17 chr4 43533264 43533382 -158794965 - AluSc SINE Alu -16 293 177 466 218 76 76 chr4 43533576 43533773 -158794574 + L1MC4a LINE L1 6477 6673 -1135 1319 197 52 21 chr4 43533776 43534065 -158794282 + AluJo SINE Alu 2 299 -3 1330 110 237 0 chr4 43534070 43534327 -158794020 + AluSg SINE Alu 3 313 0 1273 276 131 28 chr4 43534374 43534824 -158793523 + MLT1H1 LTR MaLR 1 510 -45 2463 117 26 78 chr4 43534824 43535321 -158793026 + L1MB3 LINE L1 5710 6180 -3 1273 276 131 28 chr4 43535321 43535373 -158792974 + MLT1H1 LTR MaLR 510 555 0 2117 113 10 3 chr4 43536069 43536371 -158791976 + AluSq SINE Alu 1 304 -9 2022 138 3 3 chr4 43536376 43536681 -158791666 + AluSx SINE Alu 1 305 -7 2172 110 0 3 chr4 43536720 43537030 -158791317 + AluSg SINE Alu 2 310 0 1295 97 11 5 chr4 43537031 43537216 -158791131 + AluSq SINE Alu 1 186 -127 355 125 0 36 chr4 43537216 43537299 -158791048 + AluSc SINE Alu 228 308 0 740 179 0 8 chr4 43537472 43537595 -158790752 - AluJb SINE Alu -178 134 13 488 47 0 0 chr4 43537698 43537762 -158790585 - AluSp/q SINE Alu -12 301 238 1389 103 5 0 chr4 43537787 43537981 -158790366 - AluSp SINE Alu -14 299 105 433 81 48 0 chr4 43538081 43538143 -158790204 - L1MC/D LINE L1 -420 5822 5758 2181 117 0 0 chr4 43538159 43538458 -158789889 - AluSx SINE Alu -13 299 1 650 269 22 70 chr4 43538459 43538730 -158789617 - HAL1 LINE L1 -1614 893 636 1750 110 4 19 chr4 43538889 43539153 -158789194 - AluSg SINE Alu -8 302 43 195 100 0 0 chr4 43539178 43539208 -158789139 + (A)n Simple_repeat Simple_repeat 1 30 0 1967 123 3 10 chr4 43539234 43539535 -158788812 - AluSx SINE Alu -13 299 1 849 166 3 180 chr4 43540136 43540275 -158788072 - MER96B DNA MER1_type? -183 234 72 2290 80 0 7 chr4 43540275 43540576 -158787771 + AluSp SINE Alu 1 299 -14 849 166 3 180 chr4 43540576 43540596 -158787751 - MER96B DNA MER1_type? -345 72 50 1824 132 0 40 chr4 43540596 43540731 -158787616 + AluSq SINE Alu 1 140 -173 2149 58 0 0 chr4 43540731 43540991 -158787356 + AluY SINE Alu 40 299 -12 1824 132 0 40 chr4 43540991 43541158 -158787189 + AluSq SINE Alu 140 291 -22 849 166 3 180 chr4 43541158 43541281 -158787066 - MER96B DNA MER1_type? -367 50 1 180 0 0 0 chr4 43541290 43541310 -158787037 + (T)n Simple_repeat Simple_repeat 1 20 0 289 220 0 0 chr4 43541417 43541476 -158786871 - MER2 DNA MER2_type -9 336 278 2023 121 3 10 chr4 43541476 43541790 -158786557 + AluSp SINE Alu 1 312 -1 1797 136 0 7 chr4 43541796 43542082 -158786265 + AluJb SINE Alu 5 288 -24 2401 68 0 0 chr4 43542112 43542419 -158785928 + AluY SINE Alu 1 307 -4 1746 79 0 0 chr4 43542451 43542680 -158785667 + AluY SINE Alu 1 229 -82 484 111 0 0 chr4 43542780 43542843 -158785504 - AluSg/x SINE Alu -30 279 217 1818 147 0 0 chr4 43542899 43543178 -158785169 - AluSx SINE Alu -33 279 1 23 54 0 0 chr4 43543442 43543479 -158784868 + AT_rich Low_complexity Low_complexity 1 37 0 1932 111 17 0 chr4 43543859 43544148 -158784199 + AluSx SINE Alu 11 304 -8 718 247 7 0 chr4 43544149 43544303 -158784044 - MER3 DNA MER1_type -54 155 1 2076 126 0 7 chr4 43544339 43544649 -158783698 - AluSx SINE Alu -2 310 3 906 66 0 8 chr4 43544795 43544917 -158783430 - AluSc SINE Alu -188 121 1 947 174 0 0 chr4 43545026 43545217 -158783130 - AluSg/x SINE Alu 0 322 132 2152 96 0 3 chr4 43545217 43545509 -158782838 - AluSx SINE Alu -21 291 1 2051 118 7 0 chr4 43545520 43545817 -158782530 - AluSg SINE Alu -11 299 1 1984 130 3 0 chr4 43545819 43546112 -158782235 - AluSx SINE Alu -18 294 1 324 0 0 0 chr4 43546263 43546299 -158782048 + (CAAA)n Simple_repeat Simple_repeat 4 39 0 337 178 11 67 chr4 43546300 43546390 -158781957 - MLT1E1 LTR MaLR -402 252 168 1111 181 5 0 chr4 43546556 43546744 -158781603 - AluJ SINE Alu -19 293 105 236 200 53 13 chr4 43546817 43546892 -158781455 + L1MC4 LINE L1 6628 6705 -1337 417 323 0 0 chr4 43546899 43547072 -158781275 + (TA)n Simple_repeat Simple_repeat 1 271 -36 309 313 0 42 chr4 43547072 43547168 -158781179 - L1MC4 LINE L1 -1337 6705 6614 417 323 0 0 chr4 43547168 43547206 -158781141 + (TA)n Simple_repeat Simple_repeat 270 307 0 238 152 43 0 chr4 43547206 43547252 -158781095 - L1MC3 LINE L1 -1139 6646 6599 2195 96 3 7 chr4 43547256 43547548 -158780799 - AluSg SINE Alu -19 291 1 758 125 0 17 chr4 43547573 43547693 -158780654 - AluJ SINE Alu -184 118 1 2252 148 80 48 chr4 43547694 43548132 -158780215 + MLT2B3 LTR ERVL 103 554 0 333 316 70 13 chr4 43548133 43548291 -158780056 - L2 LINE L2 -1324 1990 1824 3532 194 42 57 chr4 43548298 43548431 -158779916 + L1MC4a LINE L1 6553 6687 -1121 2002 132 42 0 chr4 43548431 43548719 -158779628 + AluSx SINE Alu 1 300 -12 1623 113 0 4 chr4 43548723 43548954 -158779393 + AluSq SINE Alu 81 310 -3 3532 194 42 57 chr4 43548954 43549000 -158779347 + L1MC4a LINE L1 6690 6735 -1073 2013 130 3 59 chr4 43549000 43549324 -158779023 + AluJb SINE Alu 1 306 -6 3532 194 42 57 chr4 43549324 43549523 -158778824 + L1MC4a LINE L1 6735 6936 -872 1736 184 7 7 chr4 43549523 43549833 -158778514 + AluJo SINE Alu 1 310 -2 3532 194 42 57 chr4 43549833 43550025 -158778322 + L1MC4a LINE L1 6936 7129 -679 2457 72 0 25 chr4 43550025 43550365 -158777982 - AluY SINE Alu 0 311 2 3532 194 42 57 chr4 43550365 43550506 -158777841 + L1MC4a LINE L1 7129 7271 -537 1745 172 7 10 chr4 43550506 43550809 -158777538 + AluJo SINE Alu 3 304 -8 3532 194 42 57 chr4 43550809 43551131 -158777216 + L1MC4a LINE L1 7271 7492 -316 1253 226 10 24 chr4 43551136 43551428 -158776919 + AluJo SINE Alu 6 293 -19 822 143 0 0 chr4 43551429 43551555 -158776792 + L1MD3 LINE L1 7657 7782 -213 1253 131 5 30 chr4 43551555 43551787 -158776560 + AluSg/x SINE Alu 94 312 0 2349 79 3 0 chr4 43551788 43552080 -158776267 + AluY SINE Alu 1 293 -18 1031 177 9 9 chr4 43552080 43552295 -158776052 + L1MD3 LINE L1 7775 7989 -6 2179 113 0 0 chr4 43552352 43552675 -158775672 + AluSx SINE Alu 1 323 0 264 216 81 0 chr4 43552935 43553009 -158775338 + MIR SINE MIR 74 153 -109 437 226 20 10 chr4 43553018 43553120 -158775227 + MLT1J1 LTR MaLR 1 103 -343 2353 104 0 0 chr4 43553424 43553722 -158774625 + AluSq SINE Alu 1 298 -15 310 209 191 35 chr4 43553725 43553840 -158774507 + FLAM_A SINE Alu 1 133 0 2359 110 0 0 chr4 43553880 43554188 -158774159 + AluSg SINE Alu 1 308 -2 1219 150 16 5 chr4 43554590 43554783 -158773564 - AluJb SINE Alu -13 299 105 2505 164 63 36 chr4 43554911 43554998 -158773349 + MER4E LTR ERV1 92 175 -604 2201 85 0 61 chr4 43554998 43555187 -158773160 - AluSc SINE Alu 0 309 147 2205 102 3 0 chr4 43555187 43555481 -158772866 - AluSg SINE Alu -15 295 1 2201 85 0 61 chr4 43555481 43555620 -158772727 - AluSc SINE Alu -162 147 1 2505 164 63 36 chr4 43555620 43556027 -158772320 + MER4E LTR ERV1 175 599 -180 1002 154 59 0 chr4 43556031 43556200 -158772147 - AluSg/x SINE Alu -2 308 130 1178 146 0 0 chr4 43556378 43556556 -158771791 - AluSg/x SINE Alu 0 310 133 2257 109 0 0 chr4 43556557 43556850 -158771497 - AluSx SINE Alu -19 293 1 832 117 0 29 chr4 43558093 43558230 -158770117 + FLAM_C SINE Alu 1 133 0 1154 153 0 0 chr4 43558239 43558415 -158769932 - AluSg/x SINE Alu -3 309 134 1951 158 0 0 chr4 43558442 43558746 -158769601 + AluJb SINE Alu 1 304 -8 213 367 27 27 chr4 43558756 43558903 -158769444 - MIR SINE MIR -113 149 3 1726 179 20 3 chr4 43559228 43559525 -158768822 + AluJo SINE Alu 1 302 -10 28 0 0 0 chr4 43559610 43559638 -158768709 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr4 43559737 43559758 -158768589 + AT_rich Low_complexity Low_complexity 1 21 0 195 129 0 0 chr4 43559874 43559905 -158768442 + (T)n Simple_repeat Simple_repeat 1 31 0 2053 148 3 0 chr4 43560399 43560709 -158767638 + AluSx SINE Alu 1 311 -1 303 244 45 119 chr4 43560725 43561036 -158767311 - MLT1K LTR MaLR -12 576 289 665 157 104 0 chr4 43561092 43561207 -158767140 - FLAM_A SINE Alu -6 127 1 2035 117 0 64 chr4 43561245 43561571 -158766776 + AluSx SINE Alu 1 305 -7 2098 99 10 30 chr4 43561575 43561713 -158766634 + AluSx SINE Alu 1 140 -172 2184 90 25 0 chr4 43561713 43562020 -158766327 + AluSp SINE Alu 1 314 0 2098 99 10 30 chr4 43562020 43562182 -158766165 + AluSx SINE Alu 140 296 -16 1033 201 141 34 chr4 43562189 43562281 -158766066 + AluJo SINE Alu 6 87 -225 2310 100 7 0 chr4 43562281 43562581 -158765766 + AluSx SINE Alu 1 302 -10 1033 201 141 34 chr4 43562581 43562751 -158765596 + AluJo SINE Alu 87 296 -16 469 0 0 32 chr4 43562883 43562946 -158765401 + (TCCA)n Simple_repeat Simple_repeat 3 63 0 479 254 137 34 chr4 43562981 43563254 -158765093 - L1MC4a LINE L1 -394 5771 5652 322 240 23 31 chr4 43563225 43563354 -158764993 - L1MC4a LINE L1 -2427 5381 5254 * 1515 129 22 9 chr4 43563772 43563997 -158764350 + AluSx SINE Alu 37 264 -48 186 71 0 0 chr4 43564002 43564030 -158764317 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 2295 106 0 3 chr4 43564290 43564593 -158763754 + AluSx SINE Alu 1 302 -10 345 188 59 20 chr4 43565062 43565163 -158763184 - MER103 DNA DNA -8 158 54 1480 157 0 0 chr4 43565348 43565571 -158762776 - AluJb SINE Alu -4 308 86 1449 161 0 0 chr4 43565669 43565886 -158762461 - AluJb SINE Alu -11 301 85 220 248 101 0 chr4 43565967 43566094 -158762253 - MIR SINE MIR -27 235 86 2270 105 0 0 chr4 43566288 43566582 -158761765 - AluSg SINE Alu -16 294 1 2709 45 0 0 chr4 43567088 43567398 -158760949 - AluY SINE Alu -1 310 1 1821 134 11 4 chr4 43567655 43567930 -158760417 + AluSq SINE Alu 1 277 -36 264 59 0 0 chr4 43569065 43569099 -158759248 + (CCA)n Simple_repeat Simple_repeat 1 34 0 1839 155 3 0 chr4 43572181 43572477 -158755870 - AluJb SINE Alu -15 297 1 207 0 0 0 chr4 43572742 43572765 -158755582 + (TATG)n Simple_repeat Simple_repeat 2 24 0 1352 137 173 12 chr4 43572765 43573007 -158755340 - AluSg SINE Alu -18 282 1 379 299 111 0 chr4 43573145 43573289 -158755058 - MIR SINE MIR -36 226 67 894 129 0 15 chr4 43573356 43573488 -158754859 - FLAM_C SINE Alu 0 133 4 2125 126 0 0 chr4 43573608 43573902 -158754445 - AluSx SINE Alu -18 294 1 1827 179 0 7 chr4 43573960 43574261 -158754086 - AluJo SINE Alu -13 299 1 760 157 0 57 chr4 43574330 43574470 -158753877 - FLAM_C SINE Alu 0 133 2 1218 138 0 0 chr4 43574540 43574707 -158753640 - AluSg/x SINE Alu -26 284 118 2186 113 0 0 chr4 43574713 43575024 -158753323 - AluSq SINE Alu 0 312 2 2221 107 3 0 chr4 43575027 43575325 -158753022 - AluSq SINE Alu -14 299 1 190 28 28 56 chr4 43575369 43575405 -158752942 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1927 93 0 0 chr4 43575439 43575685 -158752662 - AluY SINE Alu -11 300 55 501 314 104 9 chr4 43575692 43575912 -158752435 + L2 LINE L2 2532 2772 -542 246 287 7 100 chr4 43576092 43576242 -158752105 + L2 LINE L2 2948 3083 -189 298 200 71 35 chr4 43576532 43576617 -158751730 - MLT1K LTR MaLR -2 586 499 2231 107 3 3 chr4 43576980 43576991 -158751356 - AluSq SINE Alu -13 300 290 194 0 0 37 chr4 43576991 43577018 -158751329 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 2231 107 3 3 chr4 43577018 43577306 -158751041 - AluSq SINE Alu -22 291 1 720 148 19 0 chr4 43577349 43577457 -158750890 - FLAM_C SINE Alu -32 111 2 2311 94 0 0 chr4 43577648 43577934 -158750413 - AluSg SINE Alu -23 287 2 2064 96 14 14 chr4 43578150 43578430 -158749917 - AluSg SINE Alu -30 280 1 266 343 50 0 chr4 43578651 43578750 -158749597 - L2 LINE L2 -965 2349 2246 2314 99 0 0 chr4 43579298 43579591 -158748756 - AluSc SINE Alu -16 293 1 2176 140 0 3 chr4 43579676 43579983 -158748364 - AluSx SINE Alu -6 306 1 4643 171 32 23 chr4 43580082 43580413 -158747934 - L1MB2 LINE L1 0 6171 5844 1897 149 30 17 chr4 43580413 43580715 -158747632 - AluJb SINE Alu -6 306 1 4643 171 32 23 chr4 43580715 43581050 -158747297 - L1MB2 LINE L1 -327 5844 5513 1945 138 65 0 chr4 43581050 43581340 -158747007 - AluSx SINE Alu -3 309 1 4643 171 32 23 chr4 43581340 43582166 -158746181 - L1MB2 LINE L1 -658 5513 4664 2416 84 6 3 chr4 43582197 43582508 -158745839 + AluSx SINE Alu 1 312 0 1667 124 98 4 chr4 43582516 43582782 -158745565 + AluSx SINE Alu 1 291 -21 1484 159 32 62 chr4 43582986 43583295 -158745052 + AluJo SINE Alu 1 300 -12 325 244 154 0 chr4 43583441 43583564 -158744783 - L1MC4 LINE L1 -26 8016 7875 1853 152 0 7 chr4 43583811 43584094 -158744253 - AluJb SINE Alu -14 298 18 1562 139 0 0 chr4 43584179 43584402 -158743945 - AluSg/x SINE Alu -6 304 82 460 274 35 27 chr4 43584603 43584923 -158743424 - L1MC5 LINE L1 -547 7495 7260 2352 96 3 0 chr4 43584923 43585226 -158743121 - AluSq SINE Alu -9 304 1 216 0 0 0 chr4 43585251 43585275 -158743072 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1087 135 0 6 chr4 43585280 43585436 -158742911 - AluSg/x SINE Alu -24 288 134 1731 150 0 66 chr4 43585436 43585603 -158742744 - AluSx SINE Alu -13 299 161 2392 90 0 0 chr4 43585603 43585903 -158742444 - AluSc SINE Alu -9 300 1 1731 150 0 66 chr4 43585903 43586055 -158742292 - AluSx SINE Alu -151 161 1 2048 109 29 29 chr4 43586068 43586380 -158741967 - AluSx SINE Alu 0 312 1 437 231 43 62 chr4 43586388 43586622 -158741725 - L1MC4 LINE L1 -728 7233 7028 21 0 0 0 chr4 43586715 43586736 -158741611 + AT_rich Low_complexity Low_complexity 1 21 0 1184 168 0 5 chr4 43586959 43587144 -158741203 - AluJo SINE Alu -19 293 110 416 226 11 11 chr4 43587256 43587349 -158740998 - AluJ/FLAM SINE Alu -209 93 1 482 73 0 0 chr4 43587380 43587448 -158740899 + Alu SINE Alu 241 308 -4 342 0 0 0 chr4 43587449 43587487 -158740860 + (TA)n Simple_repeat Simple_repeat 1 38 0 3708 218 81 25 chr4 43587487 43588074 -158740273 - L1M4 LINE L1 -2380 3766 3213 2400 110 0 0 chr4 43588074 43588384 -158739963 - AluSx SINE Alu -2 310 1 2254 122 0 0 chr4 43588389 43588684 -158739663 - AluSq SINE Alu -18 295 1 3708 218 81 25 chr4 43588684 43588856 -158739491 - L1M4 LINE L1 -2936 3210 3049 1729 149 0 58 chr4 43588856 43589014 -158739333 - AluSx SINE Alu -21 291 158 1730 132 62 7 chr4 43589014 43589336 -158739011 - AluSp SINE Alu 0 313 5 1729 149 0 58 chr4 43589336 43589486 -158738861 - AluSx SINE Alu -154 158 1 3708 218 81 25 chr4 43589486 43589984 -158738363 - L1M4 LINE L1 -3097 3049 2431 2165 119 13 0 chr4 43589984 43590286 -158738061 - AluSp SINE Alu 0 313 8 1263 160 91 9 chr4 43590286 43590517 -158737830 - AluSx SINE Alu -62 250 1 2221 96 14 3 chr4 43590531 43590822 -158737525 - AluSq SINE Alu -19 294 1 363 243 10 10 chr4 43590825 43590928 -158737419 - L1M4 LINE L1 -3710 2436 2334 439 125 14 0 chr4 43590937 43591009 -158737338 + MER3 DNA MER1_type 137 209 0 305 301 45 61 chr4 43591018 43591264 -158737083 - L2 LINE L2 -122 3191 2950 537 276 107 5 chr4 43591264 43591460 -158736887 - L2 LINE L2 -517 2797 2582 292 226 0 60 chr4 43591481 43591565 -158736782 - L2 LINE L2 -943 2371 2293 1810 252 152 9 chr4 43591590 43592391 -158735956 - L2 LINE L2 -92 3221 2292 1102 188 20 0 chr4 43593290 43593487 -158734860 - MER20 DNA MER1_type -17 202 2 409 289 0 9 chr4 43593490 43593604 -158734743 + L2 LINE L2 3191 3303 -10 380 263 206 31 chr4 43593658 43593818 -158734529 + MIR SINE MIR 2 189 -73 344 318 71 30 chr4 43594423 43594688 -158733659 - L1ME LINE L1 -375 5746 5458 2220 96 0 23 chr4 43594688 43594991 -158733356 - AluSq SINE Alu -17 296 1 344 318 71 30 chr4 43594991 43595121 -158733226 - L1ME LINE L1 -663 5458 5335 805 248 64 4 chr4 43595482 43595716 -158732631 - MIR SINE MIR -14 248 1 1696 168 32 23 chr4 43595804 43596113 -158732234 - AluJb SINE Alu 0 312 1 434 247 115 39 chr4 43596145 43596327 -158732020 + MIR SINE MIR 19 214 -48 2139 96 0 11 chr4 43596592 43596896 -158731451 - AluSx SINE Alu 0 306 6 29 0 0 0 chr4 43597355 43597384 -158730963 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 43597442 43597463 -158730884 + AT_rich Low_complexity Low_complexity 1 21 0 205 152 0 0 chr4 43597479 43597512 -158730835 + (TTG)n Simple_repeat Simple_repeat 3 35 0 2472 45 7 0 chr4 43599401 43599693 -158728654 - AluY SINE Alu -17 294 1 2328 65 7 0 chr4 43600249 43600539 -158727808 - AluY SINE Alu -15 296 5 1484 138 9 5 chr4 43600767 43600991 -158727356 - AluSg/x SINE Alu -12 300 76 * 1942 159 0 10 chr4 43600990 43601292 -158727055 - AluJo SINE Alu -13 299 1 540 186 0 20 chr4 43601411 43601513 -158726834 + L2 LINE L2 3187 3286 -27 1049 216 39 0 chr4 43601769 43601977 -158726370 - AluJo SINE Alu -15 297 82 1740 139 0 0 chr4 43601983 43602235 -158726112 - AluSx SINE Alu -5 307 56 1595 158 88 0 chr4 43602543 43602815 -158725532 - AluJo SINE Alu -14 298 3 2148 119 3 0 chr4 43602831 43603125 -158725222 - AluSx SINE Alu -17 295 1 291 267 12 0 chr4 43603200 43603286 -158725061 + MIR SINE MIR 160 246 -16 1767 150 3 36 chr4 43603368 43603675 -158724672 - AluSx SINE Alu -15 297 1 2334 82 0 10 chr4 43603762 43604054 -158724293 - AluSg SINE Alu -20 290 2 2258 119 0 0 chr4 43604262 43604556 -158723791 - AluSc SINE Alu -15 294 1 532 252 39 0 chr4 43604730 43604857 -158723490 + MIR SINE MIR 60 191 -71 2205 129 0 0 chr4 43604877 43605172 -158723175 + AluSx SINE Alu 1 295 -17 2937 163 150 63 chr4 43605237 43606008 -158722339 - L1MB8 LINE L1 -2 6176 5327 2065 118 0 0 chr4 43606008 43606279 -158722068 - AluSx SINE Alu -41 271 1 2937 163 150 63 chr4 43606279 43606334 -158722013 - L1MB8 LINE L1 -851 5327 5278 698 220 67 0 chr4 43606540 43606749 -158721598 - L1MD3 LINE L1 -8 7987 7765 2235 104 0 0 chr4 43606773 43607060 -158721287 - AluSg SINE Alu -23 287 1 2068 146 0 0 chr4 43607063 43607357 -158720990 - AluSx SINE Alu -18 294 1 22 0 0 0 chr4 43607881 43607903 -158720444 + AT_rich Low_complexity Low_complexity 1 22 0 2153 113 3 3 chr4 43608145 43608445 -158719902 - AluSq SINE Alu -13 300 1 341 270 87 93 chr4 43608448 43608748 -158719599 - L1ME4a LINE L1 -222 5882 5585 841 119 0 0 chr4 43609216 43609334 -158719013 - FLAM_C SINE Alu -15 118 1 1268 177 50 3 chr4 43609729 43610011 -158718336 - L1MB7 LINE L1 -78 6106 5812 391 301 22 11 chr4 43610012 43610195 -158718152 - L1ME4a LINE L1 -2365 3764 3580 908 276 98 54 chr4 43610273 43610658 -158717689 - L1ME4a LINE L1 -2740 3389 2955 1781 180 3 0 chr4 43610658 43610952 -158717395 + AluJb SINE Alu 2 296 -16 908 276 98 54 chr4 43610952 43611260 -158717087 - L1ME4a LINE L1 -3174 2955 2662 630 288 63 14 chr4 43611320 43611733 -158716614 - L1ME4a LINE L1 -3583 2546 2114 22 80 0 0 chr4 43611867 43611917 -158716430 + AT_rich Low_complexity Low_complexity 1 50 0 601 276 50 35 chr4 43612089 43612728 -158715619 - L1MEd LINE L1 -4586 1724 1043 251 269 0 26 chr4 43612817 43612895 -158715452 + L1MEd LINE L1 279 354 -5765 307 322 116 0 chr4 43612908 43613054 -158715293 + L1MEd LINE L1 591 753 -5366 2084 96 10 51 chr4 43613579 43613893 -158714454 + AluSp SINE Alu 1 301 -12 732 256 94 27 chr4 43614457 43614680 -158713667 + MIR SINE MIR 1 238 -24 259 301 14 0 chr4 43615120 43615193 -158713154 - L2 LINE L2 -4 3309 3236 29 28 0 0 chr4 43615233 43615269 -158713078 + AT_rich Low_complexity Low_complexity 1 36 0 1219 124 0 0 chr4 43617813 43617982 -158710365 - AluSg/x SINE Alu -9 301 133 1672 118 51 8 chr4 43618834 43619089 -158709258 - AluSc SINE Alu -43 266 1 2121 91 29 33 chr4 43619113 43619420 -158708927 - AluY SINE Alu -4 307 2 266 225 36 27 chr4 43619595 43619706 -158708641 - L1ME4a LINE L1 -1 6120 6009 2200 118 7 0 chr4 43619817 43620122 -158708225 + AluSx SINE Alu 1 307 -5 2158 125 0 3 chr4 43620147 43620284 -158708063 + AluSx SINE Alu 1 137 -175 2234 106 10 3 chr4 43620284 43620585 -158707762 + AluSp SINE Alu 1 303 -10 2158 125 0 3 chr4 43620585 43620752 -158707595 + AluSx SINE Alu 137 304 -8 670 157 50 6 chr4 43620846 43621005 -158707342 + L1MB7 LINE L1 5284 5449 -729 400 160 0 0 chr4 43621029 43621104 -158707243 + FLAM_C SINE Alu 64 138 -5 2437 70 0 0 chr4 43621157 43621455 -158706892 - AluY SINE Alu -13 298 1 215 241 0 0 chr4 43621578 43621632 -158706715 + A-rich Low_complexity Low_complexity 1 54 0 3464 159 34 12 chr4 43621634 43622311 -158706036 + L1MB7 LINE L1 5485 6176 -8 773 266 90 69 chr4 43622350 43622430 -158705917 - L2 LINE L2 -715 2599 2522 1943 109 33 4 chr4 43622430 43622706 -158705641 - AluSx SINE Alu -28 284 1 773 266 90 69 chr4 43622706 43622890 -158705457 - L2 LINE L2 -792 2522 2343 1694 139 25 96 chr4 43622890 43623087 -158705260 - AluSx SINE Alu -11 301 92 2029 92 60 0 chr4 43623087 43623369 -158704978 - AluSp SINE Alu -14 299 1 2349 101 0 0 chr4 43623369 43623665 -158704682 - AluSg SINE Alu -13 297 1 1694 139 25 96 chr4 43623665 43623790 -158704557 - AluSx SINE Alu -218 94 1 773 266 90 69 chr4 43623790 43623903 -158704444 - L2 LINE L2 -971 2343 2213 1175 152 11 11 chr4 43623905 43624096 -158704251 - AluJo SINE Alu -8 304 114 452 241 51 23 chr4 43624099 43624295 -158704052 - L2 LINE L2 -1148 2166 1916 702 110 0 131 chr4 43624347 43624412 -158703935 + FLAM_C SINE Alu 15 52 -260 1432 115 119 81 chr4 43624412 43624707 -158703640 - AluSq SINE Alu -5 308 3 702 110 0 131 chr4 43624707 43624786 -158703561 + FLAM_C SINE Alu 52 140 -172 2090 133 10 0 chr4 43624789 43625089 -158703258 - AluSx SINE Alu -9 303 1 37 23 0 0 chr4 43625171 43625215 -158703132 + AT_rich Low_complexity Low_complexity 1 44 0 1738 161 14 18 chr4 43625216 43625501 -158702846 - AluJo SINE Alu -26 286 3 278 274 35 9 chr4 43625537 43625650 -158702697 - L1M4 LINE L1 -3439 2707 2592 203 318 0 16 chr4 43625656 43625719 -158702628 + CT-rich Low_complexity Low_complexity 3 64 0 23 0 0 0 chr4 43625719 43625742 -158702605 + AT_rich Low_complexity Low_complexity 1 23 0 1745 175 4 4 chr4 43625828 43626108 -158702239 - AluSx SINE Alu -22 290 11 3047 203 70 67 chr4 43626153 43626200 -158702147 - L1MD1 LINE L1 -309 5933 5888 1735 99 61 87 chr4 43626200 43626512 -158701835 - AluSx SINE Alu -8 304 1 3047 203 70 67 chr4 43626512 43626957 -158701390 - L1MD1 LINE L1 -354 5888 5446 2175 114 3 0 chr4 43626957 43627254 -158701093 - AluSp SINE Alu -15 298 1 3047 203 70 67 chr4 43627254 43627388 -158700959 - L1MD1 LINE L1 -796 5446 5314 1648 172 0 60 chr4 43627388 43627719 -158700628 - AluJo SINE Alu 0 312 2 3047 203 70 67 chr4 43627719 43627890 -158700457 - L1MD1 LINE L1 -928 5314 5145 2213 126 0 0 chr4 43627890 43628191 -158700156 - AluSx SINE Alu -11 301 1 3047 203 70 67 chr4 43628191 43628936 -158699411 - L1MD1 LINE L1 -1097 5145 4382 879 199 28 38 chr4 43628936 43629104 -158699243 + MER6B DNA MER2_type 2 169 -696 2482 82 0 0 chr4 43629104 43629407 -158698940 + AluSx SINE Alu 1 303 -9 879 199 28 38 chr4 43629407 43629449 -158698898 + MER6B DNA MER2_type 169 210 0 3047 203 70 67 chr4 43629449 43630056 -158698291 - L1MD1 LINE L1 -1860 4382 3779 1652 174 7 11 chr4 43630056 43630337 -158698010 - AluJo SINE Alu -7 305 26 1833 163 13 7 chr4 43630442 43630749 -158697598 - AluJo SINE Alu -3 309 1 23 0 0 0 chr4 43630844 43630867 -158697480 + AT_rich Low_complexity Low_complexity 1 23 0 2219 103 0 0 chr4 43631297 43631611 -158696736 - AluSx SINE Alu 0 314 1 29 47 0 0 chr4 43631616 43631659 -158696688 + AT_rich Low_complexity Low_complexity 1 43 0 2513 53 0 3 chr4 43632568 43632869 -158695478 + AluSx SINE Alu 1 300 -12 1387 183 57 23 chr4 43633557 43633722 -158694625 - AluJb SINE Alu -2 310 129 2053 142 0 3 chr4 43633722 43634018 -158694329 - AluSx SINE Alu -13 299 5 1387 183 57 23 chr4 43634018 43634152 -158694195 - AluJb SINE Alu -183 129 1 1949 162 13 7 chr4 43634170 43634478 -158693869 - AluJb SINE Alu -2 310 1 2247 83 0 3 chr4 43634635 43634924 -158693423 - AluY SINE Alu -23 288 1 211 222 32 79 chr4 43635119 43635182 -158693165 - L3 LINE CR1 -2 1575 1516 21 0 0 0 chr4 43635315 43635336 -158693011 + AT_rich Low_complexity Low_complexity 1 21 0 2146 108 50 0 chr4 43635485 43635782 -158692565 - AluSx SINE Alu 0 312 1 29 0 0 0 chr4 43635796 43635825 -158692522 + AT_rich Low_complexity Low_complexity 1 29 0 934 188 12 0 chr4 43636008 43636178 -158692169 - AluSc SINE Alu -5 304 133 200 35 35 0 chr4 43636180 43636209 -158692138 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 2090 128 0 0 chr4 43636209 43636490 -158691857 - AluSx SINE Alu -31 281 1 713 188 0 43 chr4 43636598 43636736 -158691611 - FLAM_C SINE Alu -1 132 1 1487 176 79 21 chr4 43637014 43637293 -158691054 - AluJo SINE Alu -17 295 1 1044 195 83 25 chr4 43637479 43637720 -158690627 - AluJo SINE Alu -12 300 46 265 346 12 12 chr4 43638394 43638556 -158689791 + (TATATG)n Simple_repeat Simple_repeat 3 164 0 1037 145 64 51 chr4 43638979 43639213 -158689134 - Tigger7 DNA MER2_type 0 2491 2255 28 29 0 0 chr4 43639326 43639361 -158688986 + AT_rich Low_complexity Low_complexity 1 35 0 331 291 104 80 chr4 43639683 43639972 -158688375 - L1M4 LINE L1 -2225 3921 3626 2282 106 0 0 chr4 43640298 43640599 -158687748 - AluSx SINE Alu -11 301 1 824 201 7 0 chr4 43640605 43640759 -158687588 + Tigger4(Zombi) DNA MER2_type 2574 2728 -3 1958 130 7 11 chr4 43640788 43641072 -158687275 - AluJb SINE Alu -29 283 1 503 171 9 0 chr4 43641794 43641899 -158686448 + CT-rich Low_complexity Low_complexity 3 108 0 5319 20 0 0 chr4 43641906 43642515 -158685832 - L1PA3 LINE L1 0 6155 5547 194 0 0 37 chr4 43642515 43642542 -158685805 + (TTTC)n Simple_repeat Simple_repeat 1 26 0 2189 86 4 14 chr4 43642542 43642822 -158685525 - AluSq SINE Alu -33 280 4 432 0 0 0 chr4 43643302 43643350 -158684997 + (TCTA)n Simple_repeat Simple_repeat 2 49 0 2169 96 0 10 chr4 43643350 43643642 -158684705 - AluSx SINE Alu -23 289 1 709 201 6 41 chr4 43644353 43644522 -158683825 - L1M4 LINE L1 -578 5606 5444 1910 194 49 75 chr4 43644539 43645095 -158683252 - MER74A LTR ERVL -17 541 1 3727 171 54 25 chr4 43645095 43646137 -158682210 - L1M4 LINE L1 -727 5451 4382 21 71 0 0 chr4 43646193 43646235 -158682112 + AT_rich Low_complexity Low_complexity 1 42 0 764 110 9 0 chr4 43646242 43646351 -158681996 - FLAM_C SINE Alu -33 110 1 330 274 0 0 chr4 43646363 43646436 -158681911 - L1M4 LINE L1 -1776 4370 4298 2290 100 0 3 chr4 43646446 43646746 -158681601 - AluSg SINE Alu -11 299 1 1822 113 117 11 chr4 43646764 43647046 -158681301 - AluJb SINE Alu 0 312 1 21 0 0 0 chr4 43647046 43647067 -158681280 + AT_rich Low_complexity Low_complexity 1 21 0 7445 62 12 42 chr4 43647536 43647764 -158680583 - SVA Other Other -520 1385 1152 1546 110 4 9 chr4 43647764 43647992 -158680355 - LTR5 LTR ERVK -741 228 2 7445 62 12 42 chr4 43647992 43649100 -158679247 - SVA Other Other -753 1152 1 180 0 0 0 chr4 43649100 43649120 -158679227 + (GGGAGA)n Simple_repeat Simple_repeat 2 21 0 251 0 0 31 chr4 43649124 43649156 -158679191 + MER51A LTR ERV1 243 273 -361 1645 172 48 0 chr4 43650264 43650556 -158677791 - AluJb SINE Alu 0 305 1 2103 192 112 59 chr4 43650783 43651309 -158677038 - MLT2B3 LTR ERVL 0 554 1 1911 134 0 0 chr4 43652170 43652445 -158675902 - AluSx SINE Alu -3 309 35 316 290 159 9 chr4 43652649 43652756 -158675591 - L2 LINE L2 -5 3267 3145 2330 86 3 3 chr4 43652836 43653166 -158675181 + AluSx SINE Alu 1 312 0 1506 211 42 135 chr4 43653484 43653865 -158674482 - L1MA9 LINE L1 0 6300 5885 7173 52 38 21 chr4 43653865 43655457 -158672890 - SVA Other Other -723 1386 1 1506 211 42 135 chr4 43655457 43655607 -158672740 - L1MA9 LINE L1 -415 5885 5846 844 175 0 29 chr4 43655607 43655744 -158672603 - FLAM_C SINE Alu 0 133 1 1506 211 42 135 chr4 43655744 43655849 -158672498 - L1MA9 LINE L1 -454 5846 5733 233 100 40 60 chr4 43655851 43655901 -158672446 + Alu SINE Alu 250 298 -3 2386 221 117 13 chr4 43655919 43656543 -158671804 + L1MB7 LINE L1 5480 6168 -16 2539 67 0 10 chr4 43656567 43656881 -158671466 + AluY SINE Alu 1 311 0 1416 205 90 59 chr4 43657157 43657339 -158671008 + L1MC5 LINE L1 7251 7426 -535 1977 145 0 13 chr4 43657339 43657643 -158670704 + AluSx SINE Alu 1 300 -12 1416 205 90 59 chr4 43657643 43657972 -158670375 + L1MC5 LINE L1 7426 7778 -183 1689 161 14 10 chr4 43658234 43658526 -158669821 - AluSx SINE Alu -19 293 1 560 254 22 7 chr4 43659173 43659311 -158669036 - MIR SINE MIR -93 169 30 255 311 58 0 chr4 43659308 43659411 -158668936 + MIR SINE MIR 154 262 0 * 21 71 0 0 chr4 43661283 43661325 -158667022 + AT_rich Low_complexity Low_complexity 1 42 0 2263 108 3 19 chr4 43662064 43662380 -158665967 + AluSx SINE Alu 1 311 -1 1184 174 34 34 chr4 43663668 43663903 -158664444 + MER46A DNA MER2_type 2 236 0 21 0 0 0 chr4 43665253 43665274 -158663073 + AT_rich Low_complexity Low_complexity 1 21 0 1667 149 100 0 chr4 43665470 43665739 -158662608 + AluSx SINE Alu 1 296 -16 190 347 137 0 chr4 43665985 43666124 -158662223 - MIR SINE MIR -51 157 32 1085 293 80 27 chr4 43666283 43666733 -158661614 - MLT1J LTR MaLR -37 474 1 406 127 0 0 chr4 43666827 43666890 -158661457 - AluSq SINE Alu -11 300 238 1362 130 0 0 chr4 43666890 43667074 -158661273 - AluSq SINE Alu -129 184 1 1021 259 51 22 chr4 43667248 43667603 -158660744 + MER47A DNA MER2_type 1 365 -1 235 346 38 69 chr4 43667853 43668200 -158660147 + L1MC4a LINE L1 392 727 -5478 1205 201 165 35 chr4 43668214 43668735 -158659612 + L1MC5 LINE L1 7318 7906 -55 1588 130 169 8 chr4 43669174 43669428 -158658919 + AluSg SINE Alu 1 295 -5 1110 192 58 9 chr4 43669668 43669892 -158658455 - MLT2B3 LTR ERVL 0 554 320 1064 268 42 0 chr4 43669900 43670161 -158658186 - MLT1F1 LTR MaLR -293 274 3 244 293 73 0 chr4 43670162 43670244 -158658103 - MIR SINE MIR -24 238 151 1530 247 146 13 chr4 43670251 43670785 -158657562 + MLT1L LTR MaLR 3 607 -8 333 287 41 8 chr4 43670797 43670919 -158657428 - MIR SINE MIR -117 145 20 26 30 0 0 chr4 43671971 43672004 -158656343 + AT_rich Low_complexity Low_complexity 1 33 0 1788 160 29 0 chr4 43672219 43672494 -158655853 - AluSx SINE Alu -20 292 10 209 250 0 40 chr4 43672572 43672648 -158655699 + (TATATG)n Simple_repeat Simple_repeat 5 77 0 2287 112 3 0 chr4 43673362 43673667 -158654680 + AluSp SINE Alu 1 306 -7 1636 93 73 4 chr4 43673691 43673938 -158654409 - L1MA3 LINE L1 0 6305 6042 447 341 141 17 chr4 43674156 43674675 -158653672 + HAL1b LINE L1 118 1504 -648 488 248 40 28 chr4 43675104 43675397 -158652950 + L1MC4a LINE L1 2169 2315 -3902 1557 141 16 4 chr4 43675751 43676000 -158652347 + AluSx SINE Alu 45 296 -16 343 323 52 22 chr4 43676004 43676233 -158652114 + L1MC4a LINE L1 2832 3067 -3148 2268 112 3 0 chr4 43676289 43676593 -158651754 + AluSx SINE Alu 1 305 -7 1663 147 3 67 chr4 43676943 43677257 -158651090 + AluJb SINE Alu 1 294 -18 675 127 18 9 chr4 43678103 43678212 -158650135 + MLT1B LTR MaLR 1 110 -357 2144 146 47 71 chr4 43678212 43678523 -158649824 - MLT2A2 LTR ERVL 0 554 230 2080 107 0 30 chr4 43678523 43678821 -158649526 - AluSx SINE Alu -23 289 1 2144 146 47 71 chr4 43678821 43679046 -158649301 - MLT2A2 LTR ERVL -324 230 1 1369 131 30 102 chr4 43679047 43679352 -158648995 + MLT1B LTR MaLR 108 390 0 181 269 15 45 chr4 43679676 43679743 -158648604 - L3 LINE CR1 -16 1561 1497 281 245 0 41 chr4 43680397 43680495 -158647852 + T-rich Low_complexity Low_complexity 2 95 0 1643 136 8 0 chr4 43680703 43680938 -158647409 + AluJo SINE Alu 1 237 -75 1587 188 32 133 chr4 43680943 43681127 -158647220 + L1MA6 LINE L1 5593 5794 -506 2184 112 3 0 chr4 43681127 43681421 -158646926 + AluSx SINE Alu 1 295 -17 1587 188 32 133 chr4 43681421 43681624 -158646723 + L1MA6 LINE L1 5794 5902 -398 1499 172 40 40 chr4 43681624 43681927 -158646420 - AluJo SINE Alu -7 305 3 1587 188 32 133 chr4 43681927 43682134 -158646213 + L1MA6 LINE L1 5902 6128 -172 1673 128 69 10 chr4 43682145 43682434 -158645913 + AluSq SINE Alu 1 306 -7 2423 58 0 0 chr4 43682435 43682726 -158645621 + AluY SINE Alu 21 311 0 1930 139 63 27 chr4 43683329 43683660 -158644687 + MER61A LTR ERV1 1 343 0 2346 112 0 0 chr4 43683940 43684252 -158644095 + AluSx SINE Alu 1 312 0 192 309 73 0 chr4 43684334 43684402 -158643945 + MIR3 SINE MIR 121 193 -15 1082 94 7 0 chr4 43684637 43684786 -158643561 + AluSg/x SINE Alu 154 303 -9 247 181 60 78 chr4 43684893 43685009 -158643338 + L1MC4a LINE L1 3204 3317 -2898 767 53 21 0 chr4 43685688 43685782 -158642565 - AluS SINE Alu -215 97 2 706 245 106 72 chr4 43685814 43686472 -158641875 + L1MC4a LINE L1 5221 5472 -743 2283 105 0 0 chr4 43686589 43686883 -158641464 + AluSg SINE Alu 1 294 -16 1551 259 101 27 chr4 43687121 43687386 -158640961 - MLT1J LTR MaLR -2 509 265 2130 121 0 7 chr4 43687386 43687691 -158640656 + AluSx SINE Alu 3 305 -7 1551 259 101 27 chr4 43687691 43687899 -158640448 - MLT1J LTR MaLR -246 265 1 1429 119 23 9 chr4 43688167 43688385 -158639962 - AluJb SINE Alu -9 303 83 2121 117 0 0 chr4 43688414 43688696 -158639651 - AluSx SINE Alu -30 282 1 26 0 0 0 chr4 43688698 43688724 -158639623 + AT_rich Low_complexity Low_complexity 1 26 0 368 262 20 74 chr4 43688830 43689032 -158639315 - L1ME4a LINE L1 -194 5927 5737 2481 50 0 3 chr4 43689057 43689355 -158638992 - AluY SINE Alu -14 297 1 377 283 161 49 chr4 43689578 43689907 -158638440 - MLT1L LTR MaLR -241 374 9 23 0 0 0 chr4 43690079 43690102 -158638245 + AT_rich Low_complexity Low_complexity 1 23 0 370 289 25 0 chr4 43690205 43690326 -158638021 - L1ME4a LINE L1 0 6121 5998 2177 112 0 0 chr4 43690393 43690718 -158637629 + AluSx SINE Alu 1 325 0 392 228 0 65 chr4 43690935 43691027 -158637320 + MIR SINE MIR 72 157 -105 615 171 0 9 chr4 43692190 43692301 -158636046 - MER1B DNA MER1_type -187 110 1 488 113 0 0 chr4 43692362 43692433 -158635914 - L1ME4a LINE L1 -223 5898 5828 1014 110 0 7 chr4 43693203 43693339 -158635008 - AluJo SINE Alu -177 135 1 785 215 31 31 chr4 43694022 43694182 -158634165 + MIR SINE MIR 56 218 -44 1875 155 3 3 chr4 43694182 43694486 -158633861 + AluJb SINE Alu 1 304 -8 785 215 31 31 chr4 43694486 43694520 -158633827 + MIR SINE MIR 217 250 -12 2211 91 3 3 chr4 43694582 43694911 -158633436 + AluSx SINE Alu 1 329 0 2006 110 0 21 chr4 43695326 43695617 -158632730 + AluSq SINE Alu 1 285 -28 336 64 0 0 chr4 43695617 43695664 -158632683 + (CA)n Simple_repeat Simple_repeat 2 48 0 604 272 63 66 chr4 43695726 43696013 -158632334 + L2 LINE L2 3028 3313 0 23 0 0 0 chr4 43696404 43696427 -158631920 + AT_rich Low_complexity Low_complexity 1 23 0 1052 295 42 32 chr4 43696855 43697329 -158631018 - MARNA DNA Mariner -98 488 10 21 36 0 0 chr4 43697655 43697683 -158630664 + AT_rich Low_complexity Low_complexity 1 28 0 241 368 24 8 chr4 43698591 43698716 -158629631 + MIR SINE MIR 56 182 -80 287 25 25 0 chr4 43699193 43699233 -158629114 + (GA)n Simple_repeat Simple_repeat 1 41 0 1579 183 13 36 chr4 43700650 43700956 -158627391 - AluJo SINE Alu -13 299 1 25 0 0 0 chr4 43700958 43700983 -158627364 + AT_rich Low_complexity Low_complexity 1 25 0 2092 107 0 0 chr4 43700983 43701264 -158627083 - AluSx SINE Alu -31 281 1 330 355 118 33 chr4 43701848 43702237 -158626110 + L2 LINE L2 987 1408 -1906 210 296 136 30 chr4 43702425 43702557 -158625790 + L2 LINE L2 1791 1936 -1378 711 146 0 0 chr4 43703645 43703755 -158624592 + MSTD LTR MaLR 1 110 -286 1744 140 56 7 chr4 43704852 43705137 -158623210 + AluSg SINE Alu 1 299 -11 2444 55 0 0 chr4 43705497 43705789 -158622558 - AluY SINE Alu -15 296 5 471 257 0 18 chr4 43705905 43706014 -158622333 - L2 LINE L2 0 3313 3207 651 215 23 0 chr4 43706198 43706328 -158622019 - MER94 DNA DNA 0 134 2 289 240 171 0 chr4 43707051 43707180 -158621167 + L1ME4a LINE L1 5754 5904 -217 216 259 86 12 chr4 43707397 43707478 -158620869 - MIR SINE MIR -79 129 43 330 289 144 6 chr4 43707819 43707984 -158620363 - MIR SINE MIR -56 206 18 268 326 155 0 chr4 43708406 43708535 -158619812 - MIR3 SINE MIR -17 191 43 386 110 68 14 chr4 43708737 43708810 -158619537 - AluSg/x SINE Alu -140 160 84 998 157 17 61 chr4 43708810 43709040 -158619307 - AluJo SINE Alu -92 220 1 225 0 0 0 chr4 43709719 43709744 -158618603 + (TTCC)n Simple_repeat Simple_repeat 4 28 0 971 163 0 0 chr4 43709872 43710032 -158618315 + AluSg/x SINE Alu 127 286 -24 1817 139 24 0 chr4 43710037 43710325 -158618022 + AluSx SINE Alu 1 295 -17 433 252 45 96 chr4 43710356 43710689 -158617658 + L1MC5 LINE L1 7611 7926 -35 2204 106 6 0 chr4 43710710 43711021 -158617326 - AluSp SINE Alu 0 313 1 305 147 133 0 chr4 43711973 43712048 -158616299 - L1ME4a LINE L1 -4 6117 6033 406 232 77 50 chr4 43712118 43712299 -158616048 - L1ME4a LINE L1 -187 5934 5749 1089 79 0 0 chr4 43712401 43712541 -158615806 - AluSg1 SINE Alu -169 140 1 1668 206 110 30 chr4 43712784 43713074 -158615273 + Charlie4a DNA MER1_type 1 343 -1618 1927 133 0 17 chr4 43713074 43713374 -158614973 + AluSq SINE Alu 1 295 -18 1668 206 110 30 chr4 43713374 43713545 -158614802 + Charlie4a DNA MER1_type 343 499 -9 269 169 0 92 chr4 43713556 43713621 -158614726 + L2 LINE L2 3254 3312 -1 2347 97 3 0 chr4 43713736 43714047 -158614300 + AluSq SINE Alu 1 312 -1 528 328 138 3 chr4 43714100 43714420 -158613927 - L2 LINE L2 -530 2784 2422 705 177 24 0 chr4 43714587 43714711 -158613636 + MLT1A1 LTR MaLR 239 365 0 4893 111 18 10 chr4 43714986 43715672 -158612675 + LTR8 LTR ERV1 1 691 0 628 234 122 54 chr4 43715686 43715891 -158612456 - MIR SINE MIR -35 227 9 180 0 0 0 chr4 43716800 43716820 -158611527 + (T)n Simple_repeat Simple_repeat 1 20 0 274 342 124 43 chr4 43717441 43717675 -158610672 + L2 LINE L2 3007 3259 -13 1491 153 3 92 chr4 43717710 43718036 -158610311 - AluSq SINE Alu -16 297 1 304 250 16 133 chr4 43718036 43718164 -158610183 + L3 LINE CR1 885 997 -580 257 295 95 33 chr4 43718172 43718382 -158609965 + L2 LINE L2 2813 3035 -237 291 327 29 19 chr4 43718480 43718584 -158609763 - MIR SINE MIR -1 261 157 471 266 8 23 chr4 43718587 43718715 -158609632 - MIR SINE MIR 0 262 137 456 241 139 0 chr4 43718751 43718888 -158609459 - MIR SINE MIR -98 164 9 365 246 30 75 chr4 43718907 43719041 -158609306 - MIR3 SINE MIR -78 130 3 1154 157 127 4 chr4 43719045 43719281 -158609066 - MER58B DNA MER1_type -1 340 76 256 119 24 24 chr4 43719279 43719321 -158609026 + AluSg/x SINE Alu 153 194 -106 * 27 62 0 0 chr4 43719431 43719479 -158608868 + AT_rich Low_complexity Low_complexity 1 48 0 2354 81 0 0 chr4 43719787 43720096 -158608251 + AluSx SINE Alu 1 309 -3 2100 130 0 7 chr4 43720498 43720806 -158607541 - AluSg SINE Alu -4 306 1 407 279 0 10 chr4 43720922 43721026 -158607321 - MIR SINE MIR -6 256 154 1014 99 13 20 chr4 43721029 43721181 -158607166 + AluSq/x SINE Alu 1 151 -161 * 1386 157 0 0 chr4 43721180 43721397 -158606950 + AluSg/x SINE Alu 88 304 -6 21 0 0 0 chr4 43721522 43721543 -158606804 + AT_rich Low_complexity Low_complexity 1 21 0 1890 170 51 48 chr4 43722139 43722534 -158605813 + MSTD LTR MaLR 1 396 0 572 275 54 0 chr4 43722618 43722767 -158605580 + L2 LINE L2 1825 1981 -1333 1595 198 13 0 chr4 43722941 43723249 -158605098 - AluSx SINE Alu 0 312 1 1153 153 0 5 chr4 43723423 43723612 -158604735 - AluSx SINE Alu -124 188 1 249 303 28 37 chr4 43723636 43723745 -158604602 + MIR SINE MIR 154 261 -1 1810 99 84 0 chr4 43723973 43724246 -158604101 - AluSx SINE Alu -16 296 1 2064 131 3 0 chr4 43724904 43725216 -158603131 + AluSq SINE Alu 1 313 0 1746 159 13 25 chr4 43725236 43725550 -158602797 + AluJo SINE Alu 1 310 -2 24 0 0 0 chr4 43725746 43725770 -158602577 + AT_rich Low_complexity Low_complexity 1 24 0 1041 80 0 20 chr4 43725770 43725921 -158602426 + AluY SINE Alu 163 310 -1 28 0 0 0 chr4 43725921 43725949 -158602398 + AT_rich Low_complexity Low_complexity 1 28 0 289 241 35 11 chr4 43726070 43726157 -158602190 + MIR SINE MIR 56 145 -63 1689 183 30 19 chr4 43726336 43726697 -158601650 + MLT1A1 LTR MaLR 1 365 0 1927 112 58 10 chr4 43728117 43728411 -158599936 - AluSg SINE Alu -2 308 1 2006 114 0 0 chr4 43728840 43729120 -158599227 - AluSq SINE Alu -27 286 7 261 148 123 49 chr4 43729135 43729216 -158599131 - MER5C DNA MER1_type -169 155 69 724 198 108 78 chr4 43729216 43729574 -158598773 - LTR56 LTR ERV1 0 445 100 2327 191 74 7 chr4 43729584 43730046 -158598301 - LTR22 LTR ERVK -16 493 1 511 157 35 25 chr4 43730046 43730155 -158598192 - LTR56 LTR ERV1 -318 119 1 184 339 65 0 chr4 43730156 43730218 -158598129 - MER5C DNA MER1_type -253 71 6 306 0 0 0 chr4 43730665 43730699 -158597648 + (TA)n Simple_repeat Simple_repeat 2 35 0 2153 109 3 3 chr4 43730699 43731003 -158597344 - AluSx SINE Alu -8 304 1 387 268 101 48 chr4 43731218 43731386 -158596961 + MIR SINE MIR 85 261 -1 1869 188 133 40 chr4 43731415 43731545 -158596802 + MER34 LTR ERV1 1 118 -424 2269 90 3 0 chr4 43731545 43731846 -158596501 + AluSp SINE Alu 1 302 -11 1869 188 133 40 chr4 43731846 43732211 -158596136 + MER34 LTR ERV1 118 542 0 3115 160 17 96 chr4 43732249 43732338 -158596009 - LTR8 LTR ERV1 -1 690 596 2099 110 0 7 chr4 43732338 43732638 -158595709 + AluSg1 SINE Alu 1 298 -11 3115 160 17 96 chr4 43732638 43733297 -158595050 - LTR8 LTR ERV1 -95 596 1 239 53 18 70 chr4 43733880 43733937 -158594410 + (GGGAGA)n Simple_repeat Simple_repeat 1 54 0 469 305 79 6 chr4 43734075 43734252 -158594095 - MER91A DNA MER1_type -6 190 1 4056 113 10 20 chr4 43734526 43735128 -158593219 - MER4A LTR ERV1 -4 596 1 4357 75 11 0 chr4 43735164 43735712 -158592635 - MER41A LTR ERV1 0 554 1 1322 132 0 5 chr4 43736434 43736623 -158591724 + MER4D LTR ERV1 1 188 -715 2170 108 13 3 chr4 43736672 43736978 -158591369 + AluSx SINE Alu 1 309 -3 1220 140 33 0 chr4 43737003 43737207 -158591140 + MER4D LTR ERV1 157 370 -502 703 84 53 0 chr4 43737207 43737302 -158591045 - AluJ/FLAM SINE Alu -212 100 1 2746 151 32 47 chr4 43737302 43737837 -158590510 + MER4D LTR ERV1 367 893 -10 390 305 46 15 chr4 43738042 43738173 -158590174 + L2 LINE L2 3137 3271 -1 473 285 8 23 chr4 43738251 43738381 -158589966 + MER5A DNA MER1_type 37 164 -25 1603 86 133 0 chr4 43738403 43738637 -158589710 + LTR9 LTR ERV1 1 265 -347 1824 109 3 78 chr4 43738637 43738957 -158589390 + AluSx SINE Alu 1 296 -16 1446 139 68 0 chr4 43739076 43739328 -158589019 - AluJo SINE Alu -35 277 9 447 285 13 20 chr4 43739497 43739648 -158588699 + L2 LINE L2 2837 2986 -286 347 295 29 19 chr4 43739660 43739765 -158588582 + MER5B DNA MER1_type 19 124 -54 21 0 0 0 chr4 43741405 43741426 -158586921 + AT_rich Low_complexity Low_complexity 1 21 0 181 327 56 9 chr4 43741801 43741908 -158586439 - L2 LINE L2 -251 3021 2910 631 234 7 122 chr4 43742566 43742844 -158585503 + MIR SINE MIR 5 250 -12 306 181 244 87 chr4 43743945 43744072 -158584275 + MER5B DNA MER1_type 2 148 -41 183 271 0 0 chr4 43744607 43744655 -158583692 - MIR SINE MIR -116 146 99 343 200 86 0 chr4 43745006 43745076 -158583271 - MER63B DNA MER1_type 0 436 361 * 887 217 22 57 chr4 43745075 43745305 -158583042 - MER63B DNA MER1_type -214 222 1 608 292 96 19 chr4 43745329 43745537 -158582810 + L1ME4a LINE L1 5571 5814 -307 1833 134 27 0 chr4 43745537 43745836 -158582511 - AluJb SINE Alu -5 307 1 608 292 96 19 chr4 43745836 43745949 -158582398 + L1ME4a LINE L1 5814 5917 -204 2407 47 0 19 chr4 43746546 43746863 -158581484 - AluY SINE Alu 0 311 1 463 253 25 101 chr4 43746864 43747062 -158581285 - MER5A DNA MER1_type -5 184 2 264 127 0 0 chr4 43747108 43747163 -158581184 + (TG)n Simple_repeat Simple_repeat 2 56 0 1970 118 3 10 chr4 43748572 43748868 -158579479 + AluSx SINE Alu 1 294 -18 2295 99 0 0 chr4 43750518 43750812 -158577535 + AluSg1 SINE Alu 1 294 -15 290 164 0 55 chr4 43751132 43751187 -158577160 - MER58 DNA MER1_type -285 56 5 873 165 0 0 chr4 43751886 43752019 -158576328 - FLAM_C SINE Alu 0 133 1 633 189 0 39 chr4 43752281 43752408 -158575939 - L1ME3A LINE L1 0 6170 6049 2500 83 3 3 chr4 43752437 43752750 -158575597 + AluSq SINE Alu 1 313 0 1862 155 0 26 chr4 43752829 43753139 -158575208 + AluJb SINE Alu 9 310 -2 227 255 32 32 chr4 43753260 43753354 -158574993 + MIR SINE MIR 31 124 -138 297 239 0 34 chr4 43753388 43753476 -158574871 + L2 LINE L2 3188 3272 0 2199 96 7 10 chr4 43753638 43753931 -158574416 + AluSc SINE Alu 1 292 -17 2121 121 0 7 chr4 43754300 43754607 -158573740 + AluSx SINE Alu 1 305 -7 2386 93 3 0 chr4 43756727 43757027 -158571320 + AluSx SINE Alu 1 301 -11 578 280 5 31 chr4 43757050 43757243 -158571104 - MIR SINE MIR -72 190 3 1623 187 28 3 chr4 43757326 43757615 -158570732 + AluJb SINE Alu 1 296 -16 2206 126 0 0 chr4 43757625 43757919 -158570428 + AluSx SINE Alu 1 294 -18 180 0 0 0 chr4 43757922 43757942 -158570405 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 872 157 0 29 chr4 43758005 43758145 -158570202 + AluJo SINE Alu 1 136 -176 21 0 0 0 chr4 43758145 43758166 -158570181 + AT_rich Low_complexity Low_complexity 1 21 0 434 250 29 0 chr4 43758508 43758612 -158569735 - MIR SINE MIR -77 185 79 2148 117 3 3 chr4 43758738 43759045 -158569302 + AluJo SINE Alu 1 307 -5 328 344 46 7 chr4 43759503 43759654 -158568693 - MIR SINE MIR -73 189 33 459 0 0 0 chr4 43760076 43760127 -158568220 + (TG)n Simple_repeat Simple_repeat 2 52 0 751 277 53 59 chr4 43762425 43762731 -158565616 + LTR33 LTR ERVL 1 305 -216 2218 77 0 14 chr4 43762731 43763060 -158565287 + AluY SINE Alu 1 325 0 751 277 53 59 chr4 43763060 43763276 -158565071 + LTR33 LTR ERVL 305 521 0 383 275 127 11 chr4 43763536 43763725 -158564622 + L1ME3A LINE L1 5258 5468 -694 365 138 4 0 chr4 43763735 43763798 -158564549 + Alu SINE Alu 1 49 -253 1748 81 5 0 chr4 43763798 43764021 -158564326 + AluSg/x SINE Alu 87 310 -2 1181 160 0 0 chr4 43764025 43764200 -158564147 + AluSg/x SINE Alu 138 312 0 1004 290 83 42 chr4 43764203 43764659 -158563688 + L1ME3A LINE L1 5477 5970 -200 2405 79 0 0 chr4 43764659 43764950 -158563397 + AluSc SINE Alu 2 292 -17 1004 290 83 42 chr4 43764950 43765158 -158563189 + L1ME3A LINE L1 5970 6168 -2 684 232 127 6 chr4 43765162 43765343 -158563004 + MIR SINE MIR 28 230 -32 2304 98 3 0 chr4 43765979 43766276 -158562071 + AluY SINE Alu 1 298 -13 404 374 34 0 chr4 43767419 43767598 -158560749 - MIR SINE MIR -50 212 28 363 270 128 7 chr4 43768077 43768225 -158560122 - MIR3 SINE MIR -24 184 19 2251 122 0 0 chr4 43768318 43768622 -158559725 + AluSx SINE Alu 2 305 -7 300 295 115 19 chr4 43768999 43769155 -158559192 - L1ME4a LINE L1 -111 6010 5840 186 43 0 0 chr4 43769265 43769288 -158559059 + (TG)n Simple_repeat Simple_repeat 1 23 0 222 233 0 0 chr4 43769288 43769348 -158558999 + (CATA)n Simple_repeat Simple_repeat 1 60 0 406 299 176 0 chr4 43769385 43769572 -158558775 - MIR SINE MIR -31 231 12 2174 113 14 0 chr4 43769705 43769998 -158558349 - AluSx SINE Alu -15 297 1 209 321 0 0 chr4 43770354 43770410 -158557937 + GA-rich Low_complexity Low_complexity 2 57 0 2291 102 3 10 chr4 43770765 43771079 -158557268 + AluSx SINE Alu 1 312 0 232 100 0 0 chr4 43771910 43771940 -158556407 + Alu SINE Alu 259 288 -14 22 35 0 0 chr4 43771947 43771976 -158556371 + AT_rich Low_complexity Low_complexity 1 29 0 1848 152 20 7 chr4 43772520 43772822 -158555525 - AluJb SINE Alu -6 306 1 354 61 0 0 chr4 43773163 43773212 -158555135 + (TG)n Simple_repeat Simple_repeat 2 50 0 240 258 100 84 chr4 43773459 43773649 -158554698 - MLT1L LTR MaLR -226 389 197 725 209 33 0 chr4 43773864 43774017 -158554330 + MER106B DNA MER1_type 902 1059 0 1757 135 0 38 chr4 43774332 43774620 -158553727 - AluSx SINE Alu -1 311 35 229 253 36 48 chr4 43774915 43774998 -158553349 + MIR SINE MIR 110 191 -71 299 127 0 18 chr4 43776416 43776471 -158551876 + (TC)n Simple_repeat Simple_repeat 1 54 0 2169 122 3 0 chr4 43776841 43777137 -158551210 - AluSx SINE Alu -15 297 1 615 170 9 0 chr4 43777482 43777588 -158550759 - FLAM_A SINE Alu 0 142 36 202 182 0 0 chr4 43778564 43778597 -158549750 + polypyrimidine Low_complexity Low_complexity 2 34 0 2064 123 31 0 chr4 43778731 43779023 -158549324 + AluSx SINE Alu 5 305 -7 2240 122 0 0 chr4 43779267 43779578 -158548769 + AluSx SINE Alu 1 311 -1 225 280 189 8 chr4 43780456 43780588 -158547759 - L1ME4a LINE L1 -1 6120 5965 393 304 95 6 chr4 43781775 43781943 -158546404 - MIR3 SINE MIR -3 205 23 24 32 0 0 chr4 43782008 43782039 -158546308 + AT_rich Low_complexity Low_complexity 1 31 0 2423 87 3 0 chr4 43782210 43782510 -158545837 + AluSx SINE Alu 1 301 -11 239 277 24 24 chr4 43782774 43782857 -158545490 - L2 LINE L2 -222 3050 2968 21 0 0 0 chr4 43783687 43783708 -158544639 + AT_rich Low_complexity Low_complexity 1 21 0 15158 122 24 24 chr4 43784417 43786554 -158541793 + Tigger1 DNA MER2_type 24 2160 -258 840 161 129 0 chr4 43786554 43786709 -158541638 - FAM SINE Alu 0 175 1 15158 122 24 24 chr4 43786709 43786848 -158541499 + Tigger1 DNA MER2_type 2160 2303 -115 2468 82 3 0 chr4 43786848 43787152 -158541195 - AluSp SINE Alu -8 305 1 15158 122 24 24 chr4 43787152 43787269 -158541078 + Tigger1 DNA MER2_type 2302 2418 0 445 311 49 29 chr4 43787306 43787550 -158540797 - L1MC4a LINE L1 -1983 5825 5577 643 233 39 0 chr4 43787557 43787686 -158540661 + MER97b DNA MER1_type? 13 146 -907 1233 216 64 20 chr4 43787695 43787991 -158540356 + MER97b DNA MER1_type? 389 697 -356 1035 172 6 0 chr4 43788001 43788158 -158540189 - AluJb SINE Alu -23 289 132 1404 173 116 7 chr4 43788189 43788466 -158539881 - AluSx SINE Alu -5 307 1 493 209 47 34 chr4 43788506 43788654 -158539693 + MER97a DNA MER1_type? 745 894 0 736 266 10 14 chr4 43788925 43789132 -158539215 + MIR SINE MIR 26 231 -31 182 328 0 0 chr4 43789261 43789319 -158539028 - MIR SINE MIR -154 108 51 2521 84 3 0 chr4 43789327 43789637 -158538710 + AluSp SINE Alu 3 313 0 2218 109 26 0 chr4 43789957 43790261 -158538086 + AluSx SINE Alu 1 312 0 240 254 0 30 chr4 43790544 43790611 -158537736 + MIR3 SINE MIR 107 171 -37 2029 139 7 0 chr4 43791050 43791372 -158536975 + AluSx SINE Alu 1 324 0 347 267 0 0 chr4 43791521 43791596 -158536751 - MIR SINE MIR -180 82 8 2484 40 27 0 chr4 43791596 43791893 -158536454 + AluY SINE Alu 1 305 -6 2021 156 24 9 chr4 43792057 43792391 -158535956 + MER2 DNA MER2_type 1 339 -6 778 239 61 57 chr4 43792521 43792560 -158535787 - Charlie8 DNA MER1_type -93 248 211 1733 169 45 10 chr4 43792560 43792726 -158535621 - AluJo SINE Alu -12 300 118 183 42 0 0 chr4 43792726 43792750 -158535597 + (TTA)n Simple_repeat Simple_repeat 2 25 0 1733 169 45 10 chr4 43792750 43792873 -158535474 - AluJo SINE Alu -194 118 1 778 239 61 57 chr4 43792873 43792919 -158535428 - Charlie8 DNA MER1_type -130 211 167 1785 234 64 36 chr4 43792919 43793453 -158534894 - MLT1H LTR MaLR 0 549 1 778 239 61 57 chr4 43793453 43793613 -158534734 - Charlie8 DNA MER1_type -174 167 1 202 313 188 0 chr4 43793688 43793800 -158534547 - L2 LINE L2 -1 3271 3139 2334 113 33 30 chr4 43793950 43794313 -158534034 + THE1B LTR MaLR 1 364 0 1930 152 41 0 chr4 43794620 43794910 -158533437 - AluSq SINE Alu -11 302 1 204 40 0 0 chr4 43795022 43795047 -158533300 + (CA)n Simple_repeat Simple_repeat 1 25 0 1932 136 35 32 chr4 43795120 43795430 -158532917 - AluJo SINE Alu -1 311 1 2201 104 0 0 chr4 43796064 43796352 -158531995 - AluSc SINE Alu -21 288 1 784 184 35 0 chr4 43796786 43796927 -158531420 + FAM SINE Alu 22 167 -18 224 326 22 0 chr4 43796964 43797056 -158531291 + MIR SINE MIR 132 225 -37 2284 107 10 3 chr4 43797466 43797775 -158530572 + AluSx SINE Alu 1 311 -1 1592 180 20 36 chr4 43798415 43798721 -158529626 + AluJb SINE Alu 12 312 0 302 335 138 13 chr4 43798743 43798895 -158529452 + MIR SINE MIR 17 187 -75 2087 114 137 22 chr4 43799149 43799190 -158529157 - MSTA LTR MaLR 0 428 393 2359 91 0 26 chr4 43799190 43799498 -158528849 + AluSg SINE Alu 1 300 -10 2087 114 137 22 chr4 43799498 43799815 -158528532 - MSTA LTR MaLR -35 393 29 2171 125 0 7 chr4 44000158 44000462 -158327885 - AluSx SINE Alu -10 302 1 266 289 58 16 chr4 44000533 44000654 -158327693 + MIR SINE MIR 22 147 -61 247 238 56 63 chr4 44000701 44000827 -158327520 + L2 LINE L2 2585 2709 -605 1920 105 19 0 chr4 44000835 44001093 -158327254 + AluSx SINE Alu 1 263 -49 520 273 54 69 chr4 44001465 44001478 -158326869 - L2 LINE L2 0 3313 3301 2292 102 0 0 chr4 44001478 44001772 -158326575 - AluSq SINE Alu -19 294 1 520 273 54 69 chr4 44001772 44002092 -158326255 - L2 LINE L2 -12 3301 2985 273 71 0 0 chr4 44002253 44002295 -158326052 + AluSx SINE Alu 260 301 -1 284 263 25 0 chr4 44002634 44002714 -158325633 + MIR SINE MIR 24 105 -157 662 288 34 5 chr4 44002739 44002944 -158325403 - MER46C DNA MER2_type -13 325 115 1773 148 48 14 chr4 44002963 44003098 -158325249 + AluSx SINE Alu 1 130 -182 2271 89 16 3 chr4 44003098 44003401 -158324946 + AluSq SINE Alu 1 307 -6 1773 148 48 14 chr4 44003401 44003555 -158324792 + AluSx SINE Alu 130 300 -12 202 154 0 39 chr4 44003555 44003607 -158324740 + GA-rich Low_complexity Low_complexity 1 50 0 180 77 0 0 chr4 44003898 44003924 -158324423 + (T)n Simple_repeat Simple_repeat 1 26 0 224 271 0 0 chr4 44004202 44004261 -158324086 - L2 LINE L2 -23 3249 3191 353 258 100 8 chr4 44004581 44004701 -158323646 - L2 LINE L2 -5 3267 3137 2124 117 3 0 chr4 44004733 44005039 -158323308 + AluSx SINE Alu 1 307 0 1380 77 0 0 chr4 44005201 44005371 -158322976 + AluSg/x SINE Alu 140 309 -3 378 292 35 77 chr4 44005371 44005678 -158322669 - L2 LINE L2 -255 3058 2761 198 256 64 13 chr4 44005949 44006027 -158322320 + MIR SINE MIR 53 134 -128 365 136 17 0 chr4 44006312 44006371 -158321976 + U7 snRNA snRNA 3 62 -1 180 0 0 0 chr4 44006386 44006406 -158321941 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 21 0 0 0 chr4 44006596 44006617 -158321730 + AT_rich Low_complexity Low_complexity 1 21 0 1518 158 82 14 chr4 44006781 44007060 -158321287 - AluJo SINE Alu -14 298 1 213 219 41 14 chr4 44007232 44007305 -158321042 - L2 LINE L2 -528 2786 2712 714 179 114 0 chr4 44007305 44007445 -158320902 - MLT1B LTR MaLR 0 390 235 829 236 121 73 chr4 44007452 44007626 -158320721 - L2 LINE L2 -33 3280 3116 1508 116 31 18 chr4 44007626 44007850 -158320497 + AluJb SINE Alu 84 310 -2 829 236 121 73 chr4 44007850 44008029 -158320318 - L2 LINE L2 -197 3116 2947 2941 131 33 2 chr4 44008029 44008480 -158319867 - MER4C LTR ERV1 0 465 1 829 236 121 73 chr4 44008480 44008672 -158319675 - L2 LINE L2 -366 2947 2702 1808 147 73 50 chr4 44008672 44008928 -158319419 - MLT1B LTR MaLR 0 390 121 2031 107 13 44 chr4 44008928 44009245 -158319102 - AluSx SINE Alu -5 307 1 1808 147 73 50 chr4 44009245 44009369 -158318978 - MLT1B LTR MaLR -269 121 1 829 236 121 73 chr4 44009369 44009442 -158318905 - L2 LINE L2 -611 2702 2634 1123 240 72 26 chr4 44009442 44009746 -158318601 + MLT1F1 LTR MaLR 248 565 -2 360 246 97 30 chr4 44009931 44010065 -158318282 - L1ME3A LINE L1 -1 6169 6027 1743 112 14 41 chr4 44010152 44010201 -158318146 - L1MB3 LINE L1 -2 6181 6132 2107 138 0 0 chr4 44010201 44010491 -158317856 - AluSx SINE Alu -22 290 1 1743 112 14 41 chr4 44010491 44010736 -158317611 - L1MB3 LINE L1 -51 6132 5895 26 30 0 0 chr4 44010750 44010783 -158317564 + AT_rich Low_complexity Low_complexity 1 33 0 844 267 22 13 chr4 44011125 44011357 -158316990 - MIR SINE MIR -12 250 17 665 166 136 18 chr4 44011357 44011526 -158316821 - MER5A DNA MER1_type 0 189 1 903 119 0 8 chr4 44011900 44012034 -158316313 + FLAM_A SINE Alu 1 133 0 1967 153 3 0 chr4 44012227 44012528 -158315819 - AluSx SINE Alu -10 302 1 936 232 33 25 chr4 44012922 44013163 -158315184 + MLT1L LTR MaLR 45 287 -328 2569 69 0 0 chr4 44013182 44013486 -158314861 - AluY SINE Alu -7 304 1 882 103 0 22 chr4 44014244 44014380 -158313967 + FLAM_C SINE Alu 1 133 0 287 252 153 9 chr4 44014935 44015046 -158313301 - L2 LINE L2 -2 3270 3144 2371 109 0 0 chr4 44015066 44015370 -158312977 + AluSx SINE Alu 1 304 -8 191 317 125 0 chr4 44015882 44016002 -158312345 + L2 LINE L2 3179 3313 0 2222 121 10 0 chr4 44016011 44016317 -158312030 - AluSg SINE Alu -1 309 1 21 0 0 0 chr4 44017015 44017036 -158311311 + AT_rich Low_complexity Low_complexity 1 21 0 785 251 20 20 chr4 44017213 44017408 -158310939 + MER58A DNA MER1_type 30 224 0 509 284 58 36 chr4 44017408 44017633 -158310714 + MIR SINE MIR 31 260 -2 29 0 0 0 chr4 44017641 44017670 -158310677 + AT_rich Low_complexity Low_complexity 1 29 0 1932 123 7 7 chr4 44017674 44017951 -158310396 - AluSx SINE Alu -10 302 26 481 278 114 13 chr4 44018477 44018659 -158309688 + MIR SINE MIR 13 224 -38 1810 162 43 13 chr4 44018659 44018962 -158309385 + AluJb SINE Alu 1 312 0 481 278 114 13 chr4 44018962 44019006 -158309341 + MIR SINE MIR 224 262 0 1885 106 15 103 chr4 44019738 44020078 -158308269 - AluJb SINE Alu -2 310 1 1728 170 35 0 chr4 44020251 44020539 -158307808 - AluJb SINE Alu -14 298 1 22 35 0 0 chr4 44020546 44020575 -158307772 + AT_rich Low_complexity Low_complexity 1 29 0 2045 189 13 57 chr4 44020575 44021047 -158307300 + L1MB5 LINE L1 5724 6174 0 920 139 0 7 chr4 44021053 44021190 -158307157 + AluJo SINE Alu 1 136 -176 270 0 0 0 chr4 44021330 44021360 -158306987 + (A)n Simple_repeat Simple_repeat 1 30 0 525 144 0 0 chr4 44021786 44021876 -158306471 + L1MA5A LINE L1 6206 6295 -2 2392 89 7 0 chr4 44021948 44022250 -158306097 + AluSp SINE Alu 1 304 -9 215 30 0 30 chr4 44022349 44022382 -158305965 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 1686 146 91 0 chr4 44022591 44022866 -158305481 + AluJo SINE Alu 1 300 -12 2312 100 3 6 chr4 44023040 44023351 -158304996 + AluSq SINE Alu 2 311 -2 192 77 0 0 chr4 44023865 44023891 -158304456 + (TCTCCC)n Simple_repeat Simple_repeat 1 26 0 1049 194 5 5 chr4 44024087 44024278 -158304069 - AluJ SINE Alu -9 303 113 817 131 16 0 chr4 44024288 44024410 -158303937 - AluJ SINE Alu -177 135 12 400 225 26 113 chr4 44024492 44024643 -158303704 + L2 LINE L2 3172 3309 -4 2148 121 10 13 chr4 44025096 44025402 -158302945 + AluSx SINE Alu 1 305 -7 187 293 61 10 chr4 44026041 44026140 -158302207 + MIR SINE MIR 80 183 -79 1365 158 73 12 chr4 44026386 44026632 -158301715 + AluJo SINE Alu 16 276 -36 1674 77 0 5 chr4 44026632 44026840 -158301507 - AluSg/x SINE Alu -9 301 95 1769 129 8 0 chr4 44026940 44027181 -158301166 - AluSg SINE Alu -67 243 1 351 175 0 0 chr4 44027196 44027253 -158301094 + MER3 DNA MER1_type 153 209 0 282 232 0 0 chr4 44027210 44027266 -158301081 - MER3 DNA MER1_type -119 90 35 * 401 270 19 116 chr4 44027276 44027399 -158300948 - MER117 DNA MER1_type -3 194 99 1578 181 7 4 chr4 44027399 44027676 -158300671 + AluJb SINE Alu 1 278 -34 401 270 19 116 chr4 44027676 44027767 -158300580 - MER117 DNA MER1_type -98 99 1 2356 107 0 0 chr4 44028583 44028891 -158299456 - AluY SINE Alu -2 309 2 2451 83 3 3 chr4 44028892 44029193 -158299154 - AluSc SINE Alu -8 301 1 240 222 0 0 chr4 44029208 44029262 -158299085 + T-rich Low_complexity Low_complexity 1 54 0 1806 173 0 10 chr4 44029734 44030034 -158298313 + AluSx SINE Alu 1 297 -15 975 146 11 54 chr4 44030034 44030219 -158298128 + AluSg/x SINE Alu 132 308 -2 410 200 35 0 chr4 44030443 44030528 -158297819 + MER58C DNA MER1_type 36 123 -92 1228 157 22 26 chr4 44030537 44030766 -158297581 + AluJb SINE Alu 85 312 0 357 200 130 0 chr4 44030768 44030868 -158297479 + MER58C DNA MER1_type 103 215 0 1351 135 4 82 chr4 44031924 44032168 -158296179 - AluSx SINE Alu -87 225 1 802 100 0 0 chr4 44032535 44032635 -158295712 + AluJb SINE Alu 133 232 -80 471 283 142 30 chr4 44032936 44033169 -158295178 + MIR SINE MIR 2 260 -2 808 190 46 0 chr4 44033247 44033421 -158294926 - MER53 DNA DNA -7 182 1 1459 151 4 54 chr4 44033434 44033658 -158294689 - AluJb SINE Alu -4 308 97 2275 111 0 0 chr4 44033658 44033955 -158294392 - AluSq SINE Alu -16 297 1 1459 151 4 54 chr4 44033955 44033988 -158294359 - AluJb SINE Alu -215 97 64 2570 53 0 3 chr4 44034341 44034644 -158293703 + AluY SINE Alu 1 302 -9 400 306 21 72 chr4 44034657 44034892 -158293455 + MIR SINE MIR 40 262 0 192 271 0 0 chr4 44034902 44034950 -158293397 + MIR3 SINE MIR 161 208 0 2298 74 3 59 chr4 44035056 44035235 -158293112 - AluSx SINE Alu -7 305 150 2229 106 3 6 chr4 44035235 44035546 -158292801 - AluSg SINE Alu 0 310 1 2298 74 3 59 chr4 44035546 44035689 -158292658 - AluSx SINE Alu -162 150 1 1678 123 15 22 chr4 44036406 44036675 -158291672 - AluSx SINE Alu -2 310 44 1374 157 13 17 chr4 44036790 44036966 -158291381 - AluJo SINE Alu -2 310 134 1514 150 91 15 chr4 44036966 44037240 -158291107 - AluJb SINE Alu -17 295 1 1374 157 13 17 chr4 44037240 44037299 -158291048 - AluJo SINE Alu -178 134 76 1003 151 0 70 chr4 44037514 44037700 -158290647 - FRAM SINE Alu -5 171 1 2385 95 0 0 chr4 44038017 44038311 -158290036 - AluSc SINE Alu -13 296 3 1853 149 14 11 chr4 44038316 44038624 -158289723 - AluSx SINE Alu 0 309 1 201 121 0 0 chr4 44038879 44038912 -158289435 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 2214 78 7 20 chr4 44039095 44039391 -158288956 + AluSx SINE Alu 1 292 -20 1754 148 55 0 chr4 44039392 44039663 -158288684 + AluJb SINE Alu 1 286 -26 671 241 75 30 chr4 44040511 44040710 -158287637 + MER3 DNA MER1_type 1 208 -1 1843 172 0 7 chr4 44041626 44041917 -158286430 + AluJb SINE Alu 2 290 -22 752 154 0 70 chr4 44041920 44042063 -158286284 + AluJo SINE Alu 1 133 -169 315 164 0 0 chr4 44042809 44042870 -158285477 + (CA)n Simple_repeat Simple_repeat 2 62 0 906 117 0 29 chr4 44042953 44043090 -158285257 + AluJo SINE Alu 1 133 -169 2203 122 0 10 chr4 44043345 44043656 -158284691 - AluSx SINE Alu -4 308 1 961 201 6 0 chr4 44044104 44044268 -158284079 + AluJo SINE Alu 133 297 -15 1941 127 53 23 chr4 44044270 44044570 -158283777 + AluSx SINE Alu 1 309 -3 1969 120 17 21 chr4 44044669 44044993 -158283354 + AluSg SINE Alu 1 310 0 965 132 0 0 chr4 44045917 44046046 -158282301 + AluSq/x SINE Alu 1 129 -184 242 0 0 0 chr4 44046052 44046081 -158282266 - Alu SINE Alu -33 267 239 961 97 0 0 chr4 44046181 44046305 -158282042 + Alu SINE Alu 176 299 -12 453 256 78 96 chr4 44046343 44046613 -158281734 - L2 LINE L2 -3 3269 3005 2028 125 10 14 chr4 44046825 44047121 -158281226 - AluSq SINE Alu -17 296 2 578 327 67 7 chr4 44047129 44047429 -158280918 - L2 LINE L2 -573 2741 2424 853 244 5 10 chr4 44047464 44047665 -158280682 - MIR SINE MIR -43 219 20 2377 108 0 13 chr4 44047679 44047995 -158280352 - AluSx SINE Alu 0 312 1 259 285 24 85 chr4 44048022 44048187 -158280160 - L2 LINE L2 -890 2424 2270 342 96 0 0 chr4 44049219 44049271 -158279076 + MADE1 DNA Mariner 1 52 -28 781 219 12 0 chr4 44049358 44049527 -158278820 - MIR SINE MIR -43 219 49 294 114 0 0 chr4 44049527 44049571 -158278776 + MADE1 DNA Mariner 37 80 0 1924 151 0 29 chr4 44050446 44050758 -158277589 - AluJb SINE Alu -9 303 1 3044 171 34 109 chr4 44050758 44051177 -158277170 - L1M4 LINE L1 -1019 5127 4678 2233 105 0 3 chr4 44051177 44051462 -158276885 + AluSp SINE Alu 1 326 0 221 48 48 24 chr4 44051462 44051504 -158276843 + (TAAA)n Simple_repeat Simple_repeat 2 180 0 3044 171 34 109 chr4 44051504 44051826 -158276521 - L1M4 LINE L1 -1468 4678 4459 853 160 0 0 chr4 44051826 44051957 -158276390 - FLAM_C SINE Alu 0 133 3 3044 171 34 109 chr4 44051957 44052095 -158276252 - L1M4 LINE L1 -1687 4459 4312 2320 107 48 20 chr4 44052383 44052737 -158275610 - THE1B LTR MaLR 0 364 1 11713 83 20 10 chr4 44052737 44053877 -158274470 - THE1B-int LTR MaLR 0 1580 418 2259 112 3 3 chr4 44053877 44054180 -158274167 + AluSq SINE Alu 1 303 -10 11713 83 20 10 chr4 44054180 44054603 -158273744 - THE1B-int LTR MaLR -1162 418 1 350 70 0 0 chr4 44054603 44054646 -158273701 - THE1B LTR MaLR 0 364 322 * 506 221 6 76 chr4 44054642 44054814 -158273533 + MER63 DNA MER1_type 894 1053 -9 273 239 219 7 chr4 44054864 44055019 -158273328 + MIR SINE MIR 20 207 -55 2360 100 0 22 chr4 44056082 44056402 -158271945 + AluSq SINE Alu 1 313 0 332 299 84 7 chr4 44056449 44056603 -158271744 + MIR SINE MIR 89 254 -8 447 197 33 16 chr4 44056621 44056745 -158271602 + MIR3 SINE MIR 75 205 -3 1717 148 0 86 chr4 44057525 44057863 -158270484 + AluSx SINE Alu 3 311 -1 256 147 0 59 chr4 44057887 44057955 -158270392 + (CATATA)n Simple_repeat Simple_repeat 4 67 0 231 280 0 32 chr4 44057955 44058048 -158270299 + L1MC4 LINE L1 6614 6703 -1339 338 216 26 9 chr4 44058058 44058174 -158270173 + (TA)n Simple_repeat Simple_repeat 2 119 0 947 119 77 0 chr4 44058563 44058706 -158269641 - AluJb SINE Alu -70 242 89 1692 142 125 40 chr4 44058781 44058998 -158269349 - MLT1B LTR MaLR -2 388 127 1900 141 0 11 chr4 44058998 44059318 -158269029 - AluJb SINE Alu 0 317 1 1692 142 125 40 chr4 44059318 44059452 -158268895 - MLT1B LTR MaLR -263 127 6 1096 64 0 83 chr4 44060811 44060967 -158267380 - AluSp SINE Alu -19 294 152 2150 110 10 10 chr4 44061216 44061526 -158266821 + AluSg SINE Alu 1 310 0 303 336 0 0 chr4 44062010 44062120 -158266227 + MIR SINE MIR 153 262 0 1903 150 24 3 chr4 44062155 44062449 -158265898 + AluJb SINE Alu 1 300 -12 1693 174 6 29 chr4 44062513 44062824 -158265523 + AluSx SINE Alu 9 312 0 1097 83 0 0 chr4 44062913 44063046 -158265301 + AluSq/x SINE Alu 1 133 -180 1970 80 4 0 chr4 44063055 44063332 -158265015 + AluY SINE Alu 34 311 0 2299 98 13 3 chr4 44065028 44065335 -158263012 + AluSq SINE Alu 1 310 -3 220 163 0 20 chr4 44065442 44065491 -158262856 - MIR SINE MIR -150 112 65 2091 124 0 47 chr4 44065843 44066165 -158262182 - AluSq SINE Alu -6 307 1 2034 115 48 0 chr4 44066303 44066598 -158261749 - AluSx SINE Alu -3 309 1 2130 147 0 0 chr4 44066771 44067077 -158261270 - AluJb SINE Alu -6 306 1 423 274 164 14 chr4 44067131 44067339 -158261008 - MIR SINE MIR -4 258 20 252 250 42 10 chr4 44067366 44067462 -158260885 - L1MC4a LINE L1 -1737 6071 5973 2352 99 0 7 chr4 44067661 44067965 -158260382 - AluSx SINE Alu -10 302 1 389 224 44 78 chr4 44068596 44068801 -158259546 - LTR41 LTR ERVL -13 760 563 2182 133 0 0 chr4 44068944 44069238 -158259109 + AluSx SINE Alu 1 294 -18 393 194 81 100 chr4 44069367 44069527 -158258820 - LTR41 LTR ERVL -616 157 1 393 365 24 10 chr4 44069798 44070006 -158258341 - MIR SINE MIR -12 250 40 327 257 153 42 chr4 44070066 44070327 -158258020 - L1M4 LINE L1 -3644 2502 2213 1629 104 9 0 chr4 44070427 44070647 -158257700 - AluSg/x SINE Alu -6 304 83 381 326 0 30 chr4 44071377 44071509 -158256838 - MIR SINE MIR -65 143 16 1153 251 104 28 chr4 44071578 44072009 -158256338 + L2 LINE L2 2850 3313 0 668 97 0 0 chr4 44072116 44072209 -158256138 - AluSg/x SINE Alu -13 297 205 1995 146 0 3 chr4 44072211 44072498 -158255849 - AluSx SINE Alu -24 288 3 1625 162 27 3 chr4 44072498 44072795 -158255552 - L1MC1 LINE L1 -8 6325 6022 1836 167 10 16 chr4 44072820 44073132 -158255215 + AluJb SINE Alu 1 310 -2 2299 106 0 3 chr4 44073248 44073549 -158254798 + AluSx SINE Alu 1 300 -12 2285 91 3 0 chr4 44073568 44073874 -158254473 + AluSp SINE Alu 1 307 0 482 225 25 67 chr4 44074000 44074179 -158254168 - L1ME LINE L1 -448 5673 5501 336 111 0 0 chr4 44074179 44074233 -158254114 + (TCCCC)n Simple_repeat Simple_repeat 4 57 0 431 153 0 12 chr4 44074662 44074747 -158253600 + CT-rich Low_complexity Low_complexity 1 84 0 1068 175 0 0 chr4 44074747 44074924 -158253423 - AluJb SINE Alu -5 307 131 867 189 23 23 chr4 44074990 44075185 -158253162 - AluJo SINE Alu 0 302 108 2009 101 67 24 chr4 44075288 44075616 -158252731 - L1MA3 LINE L1 -23 6282 5941 2384 90 3 0 chr4 44075616 44075915 -158252432 - AluY SINE Alu -11 300 1 23463 135 11 20 chr4 44075919 44076536 -158251811 - L1 LINE L1 -3542 4023 3402 2343 110 3 0 chr4 44076536 44076845 -158251502 - AluSq SINE Alu -3 310 1 23463 135 11 20 chr4 44076845 44077442 -158250905 - L1 LINE L1 -4163 3402 2801 2214 133 3 0 chr4 44077442 44077751 -158250596 - AluSx SINE Alu -2 310 1 23463 135 11 20 chr4 44077751 44079323 -158249024 - L1 LINE L1 -4764 2801 1275 2395 103 0 0 chr4 44079323 44079634 -158248713 - AluSx SINE Alu -1 311 1 23463 135 11 20 chr4 44079634 44080875 -158247472 - L1 LINE L1 -6290 1275 24 363 279 123 41 chr4 44080978 44081197 -158247150 - MIR SINE MIR -8 254 18 2192 111 3 10 chr4 44082279 44082576 -158245771 - AluSq SINE Alu -18 295 1 645 81 18 18 chr4 44083104 44083215 -158245132 + (TTTC)n Simple_repeat Simple_repeat 2 112 0 790 154 29 15 chr4 44085870 44086006 -158242341 + MER2 DNA MER2_type 1 138 -207 674 129 0 10 chr4 44086010 44086111 -158242236 - FLAM_C SINE Alu -15 128 29 598 218 165 11 chr4 44086111 44086299 -158242048 + MER2 DNA MER2_type 124 340 -5 216 368 37 15 chr4 44086691 44086827 -158241520 - L2 LINE L2 -182 3090 2952 233 153 14 42 chr4 44087295 44087367 -158240980 + (TAA)n Simple_repeat Simple_repeat 3 72 0 1773 168 0 11 chr4 44087373 44087705 -158240642 + AluJo SINE Alu 1 329 0 294 286 150 0 chr4 44087715 44087848 -158240499 - MIR SINE MIR -37 225 73 226 175 0 0 chr4 44088336 44088376 -158239971 + MIR SINE MIR 106 145 -63 2917 152 52 4 chr4 44088395 44088877 -158239470 + Tigger7 DNA MER2_type 22 526 -1961 557 94 19 94 chr4 44088853 44088959 -158239388 + Tigger7 DNA MER2_type 2391 2488 -3 * 983 79 0 0 chr4 44089062 44089188 -158239159 + AluSg/x SINE Alu 185 310 0 2186 81 3 7 chr4 44089387 44089731 -158238616 + AluY SINE Alu 1 343 0 269 380 8 8 chr4 44090149 44090278 -158238069 + MER5B DNA MER1_type 5 133 -45 1706 153 60 0 chr4 44090291 44090573 -158237774 + AluJo SINE Alu 14 312 0 2604 55 0 0 chr4 44090850 44091158 -158237189 + AluY SINE Alu 1 308 -3 1682 141 43 16 chr4 44091417 44091673 -158236674 - AluSq SINE Alu -50 263 1 614 167 0 42 chr4 44091798 44091918 -158236429 + FLAM_C SINE Alu 29 143 0 234 160 0 0 chr4 44093182 44093232 -158235115 + (TGAA)n Simple_repeat Simple_repeat 1 50 0 1099 137 0 28 chr4 44093357 44093539 -158234808 + FRAM SINE Alu 1 176 0 1924 112 3 70 chr4 44093670 44094001 -158234346 - AluSp SINE Alu -4 309 1 192 77 0 0 chr4 44094160 44094186 -158234161 + (T)n Simple_repeat Simple_repeat 1 26 0 369 286 105 0 chr4 44094368 44094473 -158233874 + MIR SINE MIR 33 148 -114 857 121 0 0 chr4 44094475 44094591 -158233756 + AluSg/x SINE Alu 138 253 -59 1872 124 0 4 chr4 44094591 44094856 -158233491 + AluSx SINE Alu 41 304 -8 2291 95 0 23 chr4 44095593 44095898 -158232449 + AluSq SINE Alu 1 298 -15 1814 208 30 1 chr4 44096704 44097133 -158231214 + L1M3 LINE L1 4946 5384 -747 1573 166 15 25 chr4 44097179 44097528 -158230819 + L1M3 LINE L1 5353 5698 -476 506 123 12 0 chr4 44097760 44097841 -158230506 + AluSp/q SINE Alu 221 302 -11 213 358 53 7 chr4 44097847 44097998 -158230349 + L2 LINE L2 2720 2877 -437 373 197 13 0 chr4 44098128 44098204 -158230143 - MER116 DNA Mariner -1 79 3 2082 115 49 3 chr4 44098422 44098710 -158229637 + AluSq SINE Alu 2 302 -11 595 340 14 5 chr4 44099257 44099472 -158228875 - MIR SINE MIR 0 262 46 398 243 29 10 chr4 44102278 44102381 -158225966 + MIR SINE MIR 148 252 -10 1193 101 0 2 chr4 44103082 44103331 -158225016 + AluSx SINE Alu 2 302 -10 2550 71 3 0 chr4 44104135 44104443 -158223904 - AluSp SINE Alu -4 309 1 732 183 24 0 chr4 44104788 44104914 -158223433 - FLAM_C SINE Alu -4 129 1 1650 182 33 4 chr4 44105449 44105765 -158222582 + AluJb SINE Alu 1 324 0 705 171 16 0 chr4 44105805 44105928 -158222419 - FLAM_A SINE Alu -7 126 2 649 230 57 72 chr4 44106021 44106105 -158222242 - MIR SINE MIR -36 226 142 2271 119 3 0 chr4 44106105 44106407 -158221940 - AluSq SINE Alu -10 303 1 649 230 57 72 chr4 44106407 44106531 -158221816 - MIR SINE MIR -120 142 21 1263 130 0 0 chr4 44107399 44107576 -158220771 - AluSx SINE Alu -8 302 126 369 58 0 0 chr4 44107576 44107628 -158220719 + (TTA)n Simple_repeat Simple_repeat 2 53 0 2238 116 7 0 chr4 44107686 44107979 -158220368 - AluSx SINE Alu -17 295 1 968 112 0 8 chr4 44107979 44108113 -158220234 - AluSx SINE Alu -179 133 1 2031 143 3 7 chr4 44108372 44108680 -158219667 - AluSx SINE Alu -5 307 1 187 294 87 0 chr4 44109403 44109495 -158218852 - L2 LINE L2 0 3313 3214 214 220 17 17 chr4 44109610 44109669 -158218678 - L2 LINE L2 -566 2748 2690 1124 133 0 0 chr4 44109676 44109834 -158218513 + AluSg/x SINE Alu 134 291 -19 258 32 0 0 chr4 44109834 44109865 -158218482 + (CAATA)n Simple_repeat Simple_repeat 2 32 0 383 277 126 10 chr4 44109956 44110162 -158218185 + L1ME4a LINE L1 5558 5787 -334 232 177 0 97 chr4 44110301 44110363 -158217984 + L1ME4a LINE L1 5982 6037 -84 195 114 0 0 chr4 44111121 44111156 -158217191 + (T)n Simple_repeat Simple_repeat 1 35 0 1658 183 3 36 chr4 44111903 44112209 -158216138 + AluJb SINE Alu 1 296 -16 803 133 9 0 chr4 44112628 44112741 -158215606 + AluSq/x SINE Alu 1 114 -198 1982 137 20 7 chr4 44113403 44113703 -158214644 - AluSx SINE Alu -8 304 1 1976 108 26 52 chr4 44114151 44114456 -158213891 + AluSx SINE Alu 1 297 -15 710 265 55 47 chr4 44114905 44115158 -158213189 - MIR SINE MIR -3 259 5 3921 234 56 24 chr4 44115353 44116670 -158211677 + L1M4 LINE L1 3052 4410 -1736 1027 80 173 0 chr4 44116718 44116880 -158211467 + AluSc SINE Alu 113 302 -7 2245 222 23 57 chr4 44116883 44117810 -158210537 + L1M4 LINE L1 4497 5356 -790 2043 132 23 3 chr4 44118198 44118501 -158209846 + AluJb SINE Alu 1 309 -3 189 0 0 0 chr4 44118887 44118908 -158209439 + (TG)n Simple_repeat Simple_repeat 2 22 0 191 360 72 14 chr4 44119293 44119432 -158208915 - L2 LINE L2 -50 3222 3076 2129 97 42 0 chr4 44119613 44119901 -158208446 + AluSx SINE Alu 1 300 -12 1168 127 0 0 chr4 44119901 44120059 -158208288 + AluSg/x SINE Alu 134 291 -21 23 0 0 0 chr4 44120061 44120084 -158208263 + AT_rich Low_complexity Low_complexity 1 23 0 861 137 0 8 chr4 44121086 44121217 -158207130 - FLAM_A SINE Alu -3 130 1 266 206 39 0 chr4 44121218 44121275 -158207072 + MLT1K LTR MaLR 529 613 -2 2024 145 17 0 chr4 44121436 44121732 -158206615 + AluSq SINE Alu 1 301 -12 315 0 0 0 chr4 44122441 44122476 -158205871 + (CA)n Simple_repeat Simple_repeat 2 36 0 203 167 42 198 chr4 44122491 44122587 -158205760 + MER5B DNA MER1_type 92 172 -6 346 266 42 100 chr4 44122753 44122871 -158205476 - MIR SINE MIR -24 238 140 2417 99 0 3 chr4 44122871 44123183 -158205164 + AluSq SINE Alu 3 313 0 346 266 42 100 chr4 44123183 44123305 -158205042 - MIR SINE MIR -122 140 12 1561 139 98 8 chr4 44123450 44123716 -158204631 + AluJo SINE Alu 1 290 -22 42 0 0 0 chr4 44123716 44123758 -158204589 + AT_rich Low_complexity Low_complexity 1 42 0 1672 172 0 56 chr4 44123805 44124108 -158204239 + AluJo SINE Alu 1 286 -26 261 0 0 0 chr4 44124168 44124197 -158204150 + (TA)n Simple_repeat Simple_repeat 2 30 0 1821 112 93 0 chr4 44124532 44124810 -158203537 + AluSx SINE Alu 1 304 -8 1618 108 5 0 chr4 44124965 44125187 -158203160 + AluSp SINE Alu 86 308 -5 269 236 46 52 chr4 44125200 44125340 -158203007 + L1MC4 LINE L1 7790 8041 -1 216 0 0 0 chr4 44125610 44125634 -158202713 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 277 159 0 0 chr4 44125635 44125679 -158202668 - L2 LINE L2 -14 3258 3215 355 302 22 14 chr4 44126136 44126275 -158202072 + MIR SINE MIR 7 146 -116 674 246 92 10 chr4 44126278 44126485 -158201862 - MIR SINE MIR -2 260 37 298 264 46 0 chr4 44126489 44126576 -158201771 + MIR SINE MIR 164 254 -8 2094 157 0 3 chr4 44126596 44126909 -158201438 + AluJo SINE Alu 1 312 0 2073 90 0 36 chr4 44127749 44127869 -158200478 + AluSg1 SINE Alu 13 136 -166 2545 71 0 3 chr4 44127869 44128180 -158200167 + AluY SINE Alu 1 310 -1 2073 90 0 36 chr4 44128180 44128359 -158199988 + AluSg1 SINE Alu 136 302 0 300 83 0 0 chr4 44128407 44128455 -158199892 + (TG)n Simple_repeat Simple_repeat 2 49 0 429 269 85 0 chr4 44128722 44128852 -158199495 + MIR SINE MIR 19 159 -103 2044 129 0 10 chr4 44129827 44130122 -158198225 - AluSx SINE Alu -20 292 1 2172 113 3 26 chr4 44130452 44130762 -158197585 + AluSx SINE Alu 1 303 -9 649 230 57 72 chr4 44131631 44131755 -158196592 + MIR SINE MIR 21 142 -120 2263 120 3 0 chr4 44131755 44132056 -158196291 + AluSq SINE Alu 1 302 -11 649 230 57 72 chr4 44132056 44132140 -158196207 + MIR SINE MIR 142 226 -36 733 156 16 0 chr4 44132233 44132355 -158195992 + FLAM_A SINE Alu 2 125 -8 642 171 81 0 chr4 44132395 44132547 -158195800 - AluJb SINE Alu 0 325 165 2186 112 3 0 chr4 44132924 44133219 -158195128 + AluSx SINE Alu 1 296 -16 2394 81 0 43 chr4 44133534 44133856 -158194491 + AluY SINE Alu 1 308 -3 924 128 0 0 chr4 44134615 44134748 -158193599 + FLAM_C SINE Alu 1 133 0 584 68 39 0 chr4 44134749 44134852 -158193495 + (TA)n Simple_repeat Simple_repeat 2 108 0 372 331 70 6 chr4 44134871 44135028 -158193319 - MIR3 SINE MIR -17 191 25 296 269 81 48 chr4 44137326 44137535 -158190812 - MIR SINE MIR -42 220 10 543 127 0 0 chr4 44137574 44137653 -158190694 + Charlie5 DNA MER1_type 21 99 -2513 256 263 12 25 chr4 44138003 44138083 -158190264 - L1ME LINE L1 -249 5872 5794 666 261 94 37 chr4 44138298 44138543 -158189804 + MIR SINE MIR 2 260 -2 904 130 20 14 chr4 44138806 44138952 -158189395 + BC200 scRNA scRNA 1 147 -53 315 247 120 53 chr4 44139458 44139608 -158188739 + L1ME3 LINE L1 5562 5721 -400 1894 115 38 60 chr4 44139769 44140116 -158188231 - MER44D DNA MER2_type 0 609 1 2412 50 40 13 chr4 44140136 44140435 -158187912 + AluY SINE Alu 1 307 -4 337 205 164 0 chr4 44140468 44140590 -158187757 + L1ME4a LINE L1 5979 6120 -1 1906 114 3 63 chr4 44140897 44141212 -158187135 + AluSx SINE Alu 1 296 -16 243 135 0 0 chr4 44141216 44141253 -158187094 - Alu SINE Alu -65 237 201 2064 149 7 3 chr4 44141504 44141813 -158186534 + AluSx SINE Alu 1 310 -2 248 318 70 0 chr4 44142655 44142784 -158185563 - MER117 DNA MER1_type -48 149 12 2161 119 0 3 chr4 44142815 44143109 -158185238 - AluSx SINE Alu -18 294 2 2126 131 6 13 chr4 44143523 44143836 -158184511 + AluSx SINE Alu 1 311 -1 316 329 82 19 chr4 44144470 44144628 -158183719 + MIR SINE MIR 43 210 -52 2402 80 0 0 chr4 44145339 44145627 -158182720 + AluSg1 SINE Alu 1 288 -21 1312 89 0 0 chr4 44145746 44145914 -158182433 + AluSp SINE Alu 131 298 -15 1441 232 40 19 chr4 44146315 44146690 -158181657 + L1ME3 LINE L1 5776 6158 -4 2309 85 3 0 chr4 44146711 44147023 -158181324 + AluSx SINE Alu 1 313 0 761 153 0 0 chr4 44147299 44147410 -158180937 + FLAM_C SINE Alu 13 123 -20 2350 66 10 20 chr4 44147432 44147736 -158180611 + AluY SINE Alu 1 301 -10 2252 121 3 3 chr4 44147738 44148051 -158180296 + AluSq SINE Alu 1 313 0 209 370 0 10 chr4 44148254 44148354 -158179993 - L2 LINE L2 -50 3263 3165 914 116 23 8 chr4 44148625 44148754 -158179593 + AluSq/x SINE Alu 1 131 -182 1957 124 72 0 chr4 44149509 44149800 -158178547 + AluSx SINE Alu 1 312 0 2249 92 27 3 chr4 44149976 44150269 -158178078 + AluSx SINE Alu 2 301 -11 2342 110 3 0 chr4 44150269 44150608 -158177739 + AluSx SINE Alu 1 340 0 2405 92 0 0 chr4 44151550 44151854 -158176493 - AluSq SINE Alu -9 304 1 195 42 0 0 chr4 44153446 44153470 -158174877 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 314 164 60 0 chr4 44153501 44153568 -158174779 + MIR SINE MIR 71 141 -121 211 281 0 18 chr4 44153987 44154044 -158174303 + CT-rich Low_complexity Low_complexity 3 58 0 2551 77 3 0 chr4 44154087 44154398 -158173949 - AluSx SINE Alu 0 312 1 276 130 0 0 chr4 44154934 44154980 -158173367 + (TTCC)n Simple_repeat Simple_repeat 1 46 0 2070 132 10 7 chr4 44154980 44155275 -158173072 - AluSx SINE Alu -16 296 1 1839 165 45 15 chr4 44155436 44155501 -158172846 - MER2 DNA MER2_type 0 345 283 374 50 33 0 chr4 44155501 44155561 -158172786 + L1MA3 LINE L1 6244 6305 0 1839 165 45 15 chr4 44155561 44155829 -158172518 - MER2 DNA MER2_type -62 283 2 21 0 0 0 chr4 44155875 44155896 -158172451 + AT_rich Low_complexity Low_complexity 1 21 0 2237 103 3 25 chr4 44155988 44156307 -158172040 - AluSx SINE Alu 0 312 1 248 212 195 42 chr4 44156377 44156495 -158171852 - MIR3 SINE MIR -71 137 2 1189 94 198 0 chr4 44156535 44156727 -158171620 + MER30 DNA MER1_type 1 230 0 1569 161 7 61 chr4 44156746 44157056 -158171291 + AluJb SINE Alu 3 295 -17 2444 84 3 0 chr4 44157128 44157426 -158170921 - AluSp SINE Alu -13 300 2 2441 84 0 7 chr4 44157490 44157798 -158170549 - AluSc SINE Alu -3 306 1 1691 193 165 85 chr4 44158716 44159018 -158169329 + Charlie1a DNA MER1_type 1 277 -2484 2237 105 13 16 chr4 44159018 44159332 -158169015 - AluSq SINE Alu 0 313 1 1691 193 165 85 chr4 44159332 44159642 -158168705 + Charlie1a DNA MER1_type 277 662 -793 295 147 213 0 chr4 44159618 44159693 -158168654 + MER66A LTR ERV1 246 336 -142 * 21 36 0 0 chr4 44159693 44159721 -158168626 + AT_rich Low_complexity Low_complexity 1 28 0 1769 186 9 3 chr4 44159728 44160054 -158168293 + Charlie1a DNA MER1_type 645 972 -483 245 121 0 0 chr4 44160054 44160087 -158168260 + AluSx SINE Alu 1 33 -100 2290 114 0 0 chr4 44160279 44160586 -158167761 - AluY SINE Alu -4 307 1 2277 107 0 3 chr4 44160761 44161059 -158167288 + AluSx SINE Alu 9 305 -7 233 254 34 0 chr4 44161072 44161131 -158167216 + CT-rich Low_complexity Low_complexity 3 63 0 548 201 58 58 chr4 44161959 44161985 -158166362 - L1ME2 LINE L1 -9 6155 6130 2238 110 0 0 chr4 44161985 44162276 -158166071 + AluSx SINE Alu 1 291 -21 548 201 58 58 chr4 44162276 44162423 -158165924 - L1ME2 LINE L1 -33 6131 5982 2302 66 33 0 chr4 44162740 44163014 -158165333 + AluSg SINE Alu 7 289 -21 1357 94 0 11 chr4 44163014 44163195 -158165152 + AluSg/x SINE Alu 134 312 0 236 219 158 12 chr4 44163225 44163307 -158165040 - MIR SINE MIR -66 196 103 2106 105 30 30 chr4 44163312 44163607 -158164740 + AluSx SINE Alu 1 295 -17 2131 126 3 0 chr4 44163738 44164032 -158164315 + AluSq SINE Alu 1 295 -18 269 319 147 0 chr4 44164183 44164299 -158164048 + L2 LINE L2 2623 2755 -559 319 273 91 9 chr4 44164735 44164845 -158163502 + L2 LINE L2 3154 3272 0 236 158 0 0 chr4 44164969 44165007 -158163340 + Charlie8 DNA MER1_type 221 258 -2159 2046 190 3 11 chr4 44165113 44165486 -158162861 - MLT1B LTR MaLR 0 390 21 2092 99 4 0 chr4 44166275 44166547 -158161800 + AluSq SINE Alu 23 295 -18 438 269 119 26 chr4 44166726 44166919 -158161428 - MIR SINE MIR 0 262 52 1863 139 0 4 chr4 44166997 44167319 -158161028 - AluSq SINE Alu 0 340 20 383 188 0 0 chr4 44167319 44167383 -158160964 - AluJo SINE Alu -160 142 79 191 310 102 32 chr4 44167613 44167800 -158160547 - L2 LINE L2 -463 2851 2652 2085 109 17 3 chr4 44167801 44168095 -158160252 + AluSg SINE Alu 1 298 -12 266 270 0 0 chr4 44168116 44168179 -158160168 + MIR SINE MIR 88 150 -112 241 250 36 60 chr4 44168175 44168259 -158160088 + L2 LINE L2 3188 3269 -3 * 2047 149 0 3 chr4 44168688 44168996 -158159351 + AluJb SINE Alu 1 307 -5 379 336 0 14 chr4 44169323 44169469 -158158878 + MIR SINE MIR 23 166 -96 764 209 109 5 chr4 44169486 44169696 -158158651 + L1ME3A LINE L1 5939 6170 0 2712 106 11 0 chr4 44170598 44170958 -158157389 - THE1B LTR MaLR 0 364 1 2318 106 0 3 chr4 44171913 44172214 -158156133 - AluSx SINE Alu -12 300 1 566 264 38 13 chr4 44172214 44172373 -158155974 - MIR SINE MIR -68 194 32 1105 75 0 0 chr4 44172804 44172938 -158155409 + AluY SINE Alu 1 134 -177 264 91 0 0 chr4 44173038 44173082 -158155265 + (TTTA)n Simple_repeat Simple_repeat 3 46 0 2064 120 18 0 chr4 44173089 44173365 -158154982 - AluSx SINE Alu -31 281 1 2185 110 6 35 chr4 44173373 44173690 -158154657 - AluSx SINE Alu -4 308 1 416 174 12 35 chr4 44173690 44173767 -158154580 + Tigger5 DNA MER2_type 2247 2323 0 443 236 43 36 chr4 44173767 44173907 -158154440 - MER3 DNA MER1_type -68 141 1 1212 68 0 0 chr4 44173912 44174117 -158154230 - AluYa8 SINE Alu 0 337 133 1822 111 66 15 chr4 44174118 44174389 -158153958 - AluSx SINE Alu -5 307 23 2080 101 20 10 chr4 44174486 44174784 -158153563 - AluSc SINE Alu -8 301 1 182 176 0 0 chr4 44174896 44174930 -158153417 + L3 LINE CR1 711 744 -833 2087 159 118 20 chr4 44174959 44175349 -158152998 + MSTA LTR MaLR 1 428 0 3509 162 32 2 chr4 44175349 44175948 -158152399 + MSTA-int LTR MaLR 1 617 -1034 547 118 0 0 chr4 44176049 44176125 -158152222 + AluS SINE Alu 220 295 -17 699 239 35 80 chr4 44176254 44176455 -158151892 - MER58A DNA MER1_type -26 198 7 2033 159 0 6 chr4 44176564 44176878 -158151469 - AluJb SINE Alu 0 312 1 233 37 0 0 chr4 44177041 44177068 -158151279 + (T)n Simple_repeat Simple_repeat 1 27 0 664 293 36 28 chr4 44177178 44177427 -158150920 - L1MEc LINE L1 -6115 281 31 269 231 31 0 chr4 44178951 44179016 -158149331 - MER103 DNA DNA -25 141 75 183 42 0 0 chr4 44179269 44179293 -158149054 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1602 55 5 32 chr4 44179296 44179516 -158148831 - AluY SINE Alu -20 291 78 1559 104 0 28 chr4 44179838 44180050 -158148297 - AluY SINE Alu -105 206 1 307 100 0 0 chr4 44180050 44180090 -158148257 + MSTA LTR MaLR 389 428 0 189 314 167 19 chr4 44180091 44180247 -158148100 + MIR SINE MIR 54 232 -30 402 360 118 22 chr4 44180398 44180862 -158147485 + L3 LINE CR1 794 1302 -275 1005 150 0 0 chr4 44231105 44231252 -158097095 + AluSg/x SINE Alu 154 300 -12 2244 116 0 0 chr4 44231785 44232086 -158096261 - AluSx SINE Alu -7 305 5 236 109 0 43 chr4 44232348 44232394 -158095953 + (GAAAA)n Simple_repeat Simple_repeat 2 45 0 1077 89 0 20 chr4 44232398 44232544 -158095803 + AluSq/x SINE Alu 1 143 -170 280 98 0 0 chr4 44232544 44232585 -158095762 + AluSq/x SINE Alu 95 135 -168 407 58 0 0 chr4 44232585 44232637 -158095710 + AluSc SINE Alu 82 133 -176 1586 113 0 5 chr4 44232637 44232849 -158095498 + AluSg/x SINE Alu 82 292 -18 264 300 80 10 chr4 44232944 44233044 -158095303 + MIR3 SINE MIR 70 176 -32 1610 185 3 23 chr4 44233068 44233376 -158094971 - AluJb SINE Alu -10 302 1 809 150 0 34 chr4 44233821 44233968 -158094379 + AluSg/x SINE Alu 171 312 0 1971 126 18 4 chr4 44233976 44234253 -158094094 + AluSq SINE Alu 1 281 -32 243 0 0 0 chr4 44234253 44234280 -158094067 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 268 311 47 58 chr4 44234864 44235054 -158093293 - L2 LINE L2 -10 3262 3075 518 139 78 0 chr4 44235132 44235153 -158093194 - L1MB5 LINE L1 -2 6172 6154 1818 159 14 3 chr4 44235153 44235443 -158092904 - AluSx SINE Alu -19 293 1 518 139 78 0 chr4 44235443 44235536 -158092811 - L1MB5 LINE L1 -20 6154 6049 1326 205 4 0 chr4 44235536 44235775 -158092572 - AluJb SINE Alu -7 305 66 2174 93 0 4 chr4 44235875 44236144 -158092203 - AluSg SINE Alu -41 269 2 2084 103 7 3 chr4 44236202 44236507 -158091840 - AluSx SINE Alu 0 306 1 302 304 43 22 chr4 44237113 44237251 -158091096 + L2 LINE L2 2596 2736 -578 1860 131 29 4 chr4 44237278 44237577 -158090770 + AluJb SINE Alu 1 306 0 715 180 0 0 chr4 44237799 44237921 -158090426 + FLAM_C SINE Alu 5 126 -17 1889 140 4 0 chr4 44238057 44238329 -158090018 - AluSx SINE Alu -39 273 1 184 296 87 35 chr4 44238366 44238538 -158089809 + L2 LINE L2 2771 2951 -363 22 35 0 0 chr4 44238725 44238754 -158089593 + AT_rich Low_complexity Low_complexity 1 29 0 2812 135 8 70 chr4 44238890 44238949 -158089398 + L1MC1 LINE L1 5835 5896 -437 2206 121 3 3 chr4 44238949 44239256 -158089091 + AluSx SINE Alu 1 307 -5 2812 135 8 70 chr4 44239256 44239728 -158088619 + L1MC1 LINE L1 5896 6333 0 460 241 6 6 chr4 44239731 44239901 -158088446 + (TA)n Simple_repeat Simple_repeat 2 171 0 2139 123 3 3 chr4 44239973 44240273 -158088074 + AluSx SINE Alu 3 302 -10 359 125 66 75 chr4 44240356 44240519 -158087828 - MER3 DNA MER1_type -1 208 5 2211 122 0 0 chr4 44240671 44240965 -158087382 - AluSx SINE Alu -18 294 1 831 122 0 14 chr4 44241210 44241349 -158086998 - Alu SINE Alu 0 310 174 635 115 0 10 chr4 44241449 44241545 -158086802 - AluSq/x SINE Alu -180 133 39 32 48 0 48 chr4 44241698 44241752 -158086595 + AT_rich Low_complexity Low_complexity 1 51 -28 2490 43 3 13 chr4 44241752 44242053 -158086294 + AluY SINE Alu 14 311 0 32 48 0 48 chr4 44242053 44242081 -158086266 + AT_rich Low_complexity Low_complexity 51 79 0 1382 176 38 22 chr4 44242201 44242297 -158086050 + AluJo SINE Alu 40 133 -179 2462 88 3 0 chr4 44242297 44242605 -158085742 + AluSp SINE Alu 1 309 -4 1382 176 38 22 chr4 44242605 44242775 -158085572 + AluJo SINE Alu 133 310 -2 1328 131 5 0 chr4 44243300 44243491 -158084856 - AluSg/x SINE Alu -3 307 116 2551 4 0 0 chr4 44243594 44243863 -158084484 - AluYa5 SINE Alu -42 269 1 2358 108 0 0 chr4 44244236 44244543 -158083804 - AluSx SINE Alu -4 308 2 313 167 61 0 chr4 44244846 44244912 -158083435 - MIR SINE MIR -91 171 102 1632 87 59 5 chr4 44245113 44245332 -158083015 - AluSx SINE Alu -21 291 61 1258 204 24 8 chr4 44245420 44245675 -158082672 - MER58 DNA MER1_type -2160 260 2 2338 99 0 3 chr4 44246110 44246412 -158081935 + AluSx SINE Alu 1 301 -11 392 191 17 98 chr4 44246412 44246506 -158081841 - MER113 DNA MER1_type? -345 176 101 1932 138 0 0 chr4 44246506 44246788 -158081559 + AluSx SINE Alu 30 311 -1 392 191 17 98 chr4 44246788 44246866 -158081481 - MER113 DNA MER1_type? -420 101 18 641 227 182 0 chr4 44247133 44247336 -158081011 + MIR SINE MIR 2 241 -21 277 141 0 113 chr4 44247366 44247437 -158080910 + AluSq/x SINE Alu 84 146 -156 719 158 0 0 chr4 44247437 44247551 -158080796 + AluJo/FRAM SINE Alu 176 289 -23 1578 143 18 22 chr4 44247655 44247928 -158080419 + L1MB7 LINE L1 5738 6009 -175 1862 141 0 33 chr4 44248207 44248513 -158079834 + AluJb SINE Alu 1 296 -16 29 28 0 0 chr4 44248710 44248746 -158079601 + AT_rich Low_complexity Low_complexity 1 36 0 2333 108 0 0 chr4 44248821 44249127 -158079220 - AluY SINE Alu -5 306 1 2175 119 0 10 chr4 44249130 44249432 -158078915 - AluSx SINE Alu -13 299 1 367 267 140 7 chr4 44249439 44249589 -158078758 - MIR SINE MIR -11 251 82 1964 178 81 35 chr4 44249794 44250278 -158078069 - LTR54 LTR ERV1 0 510 5 735 191 0 0 chr4 44250278 44250404 -158077943 - FLAM_A SINE Alu -16 126 1 1129 61 0 0 chr4 44250637 44250769 -158077578 - AluY SINE Alu -179 132 1 1738 60 0 19 chr4 44250771 44250986 -158077361 - AluSg SINE Alu -99 211 1 606 276 98 14 chr4 44250986 44251261 -158077086 - L2 LINE L2 -559 2755 2458 3053 87 7 39 chr4 44251268 44251538 -158076809 + L1PB2 LINE L1 5703 5953 -198 2149 120 7 7 chr4 44251538 44251839 -158076508 + AluSg SINE Alu 1 301 -9 3053 87 7 39 chr4 44251839 44252029 -158076318 + L1PB2 LINE L1 5953 6148 -3 2434 100 0 0 chr4 44252545 44252854 -158075493 + AluSg SINE Alu 1 309 -1 468 243 167 65 chr4 44252983 44253246 -158075101 + L2 LINE L2 3023 3312 -1 195 324 14 0 chr4 44253241 44253312 -158075035 + MIR SINE MIR 183 254 -8 * 30 45 0 0 chr4 44253387 44253431 -158074916 + AT_rich Low_complexity Low_complexity 1 44 0 1386 126 0 24 chr4 44253534 44253740 -158074607 - AluSx SINE Alu -111 201 1 1417 176 118 14 chr4 44253809 44253979 -158074368 - Charlie4a DNA MER1_type -1578 383 232 1914 164 0 23 chr4 44253979 44254283 -158074064 - AluJb SINE Alu -14 298 2 1417 176 118 14 chr4 44254283 44254459 -158073888 - Charlie4a DNA MER1_type -1729 232 1 2618 62 0 0 chr4 44254593 44254898 -158073449 - AluY SINE Alu -6 305 1 2213 66 21 3 chr4 44255522 44255809 -158072538 - AluSx SINE Alu -20 292 1 380 130 0 0 chr4 44256291 44256367 -158071980 + AluSp/q SINE Alu 232 307 0 1865 123 13 26 chr4 44256552 44256854 -158071493 - AluSx SINE Alu -14 298 1 317 257 54 0 chr4 44258086 44258160 -158070187 + L2 LINE L2 3230 3307 -6 2142 96 4 0 chr4 44258319 44258635 -158069712 + AluSg SINE Alu 1 317 0 892 158 0 0 chr4 44258915 44259054 -158069293 - FLAM_C SINE Alu -4 139 1 1675 122 46 0 chr4 44259069 44259331 -158069016 - AluSx SINE Alu 0 312 39 329 200 21 74 chr4 44259431 44259526 -158068821 - AluS SINE Alu -213 90 1 187 262 0 0 chr4 44259669 44259711 -158068636 - MIR SINE MIR -16 246 205 184 311 96 53 chr4 44259837 44260046 -158068301 - L2 LINE L2 -226 3046 2829 2229 109 0 0 chr4 44260104 44260416 -158067931 - AluSx SINE Alu 0 312 1 192 321 89 48 chr4 44260444 44260839 -158067508 - L2 LINE L2 -654 2660 2250 250 287 141 75 chr4 44261184 44261211 -158067136 + L2 LINE L2 2732 2756 -557 329 0 24 0 chr4 44261211 44261252 -158067095 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 1832 155 3 0 chr4 44261257 44261547 -158066800 - AluJb SINE Alu -21 291 1 250 287 141 75 chr4 44261547 44261917 -158066430 + L2 LINE L2 2759 3152 -161 591 309 81 13 chr4 44262488 44262513 -158065834 - L2 LINE L2 -179 3134 3112 2114 117 3 0 chr4 44262513 44262821 -158065526 + AluSx SINE Alu 1 309 -3 591 309 81 13 chr4 44262821 44263102 -158065245 - L2 LINE L2 -201 3112 2807 221 350 29 10 chr4 44263588 44263691 -158064656 + MIR SINE MIR 44 148 -114 1467 229 56 74 chr4 44263700 44264136 -158064211 - MLT1E3 LTR MaLR -2 622 169 839 153 0 0 chr4 44264136 44264260 -158064087 - FLAM_C SINE Alu -6 127 4 1467 229 56 74 chr4 44264260 44264427 -158063920 - MLT1E3 LTR MaLR -455 169 1 2148 92 7 0 chr4 44264590 44264883 -158063464 + AluSx SINE Alu 2 296 -16 628 106 0 0 chr4 44265290 44265375 -158062972 - AluY SINE Alu -232 86 2 2066 201 16 19 chr4 44266070 44266268 -158062079 + MER63B DNA MER1_type 1 198 -864 2065 129 0 0 chr4 44266268 44266570 -158061777 + AluSx SINE Alu 1 302 -10 2165 101 0 3 chr4 44266572 44266868 -158061479 + AluSx SINE Alu 1 295 -17 2066 201 16 19 chr4 44266868 44267093 -158061254 + MER63B DNA MER1_type 199 426 -10 638 295 40 40 chr4 44267389 44267640 -158060707 - MIR SINE MIR -1 261 11 629 121 379 21 chr4 44267914 44268054 -158060293 + AluJo SINE Alu 112 301 -11 1802 143 24 3 chr4 44268054 44268348 -158059999 + AluSx SINE Alu 1 300 -12 2463 57 0 0 chr4 44268513 44268813 -158059534 - AluY SINE Alu -11 300 1 1116 130 0 6 chr4 44268835 44269004 -158059343 - FRAM SINE Alu -9 167 1 246 239 39 67 chr4 44269012 44269192 -158059155 + L1MC4a LINE L1 5765 5939 -1869 1890 136 0 7 chr4 44269372 44269658 -158058689 + AluJb SINE Alu 14 297 -15 577 111 11 0 chr4 44269696 44269786 -158058561 + MER53 DNA DNA 99 189 0 29 28 0 0 chr4 44269989 44270025 -158058322 + AT_rich Low_complexity Low_complexity 1 36 0 745 289 45 12 chr4 44270762 44271004 -158057343 + LTR33 LTR ERVL 38 287 -234 2061 109 16 13 chr4 44271006 44271317 -158057030 - AluSx SINE Alu 0 312 1 22 80 0 0 chr4 44271558 44271608 -158056739 + AT_rich Low_complexity Low_complexity 1 50 0 30 19 0 39 chr4 44271719 44271750 -158056597 + AT_rich Low_complexity Low_complexity 1 31 -19 717 167 18 0 chr4 44271750 44271864 -158056483 - FLAM_A SINE Alu -17 116 1 30 19 0 39 chr4 44271864 44271884 -158056463 + AT_rich Low_complexity Low_complexity 31 50 0 22 96 0 0 chr4 44271929 44271981 -158056366 + AT_rich Low_complexity Low_complexity 1 52 0 21 36 0 0 chr4 44272390 44272418 -158055929 + AT_rich Low_complexity Low_complexity 1 28 0 2596 29 0 7 chr4 44273119 44273429 -158054918 - AluY SINE Alu -3 308 1 195 42 0 0 chr4 44273693 44273717 -158054630 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 2127 113 0 0 chr4 44273717 44274001 -158054346 - AluSx SINE Alu -28 284 1 1219 167 0 22 chr4 44274072 44274294 -158054053 - AluJb SINE Alu -45 267 51 231 205 0 0 chr4 44274303 44274342 -158054005 - MIR SINE MIR -4 258 220 862 206 0 11 chr4 44274345 44274529 -158053818 - FRAM SINE Alu -1 175 1 322 211 161 21 chr4 44274529 44274648 -158053699 - MIR SINE MIR -62 146 58 1277 210 15 4 chr4 44274686 44274948 -158053399 - AluJo SINE Alu -47 265 1 1143 144 0 93 chr4 44275410 44275646 -158052701 + MER20 DNA MER1_type 4 217 -2 764 100 8 25 chr4 44275680 44275800 -158052547 - FLAM_C SINE Alu 0 143 26 1165 141 0 0 chr4 44275927 44276104 -158052243 - AluSg/x SINE Alu -2 308 132 1868 122 7 23 chr4 44276104 44276407 -158051940 - AluSx SINE Alu -14 298 1 960 272 66 25 chr4 44276469 44276939 -158051408 - L1MEc LINE L1 -4863 1250 762 745 175 0 44 chr4 44276939 44277076 -158051271 - FLAM_A SINE Alu -1 132 2 1072 146 5 60 chr4 44277078 44277246 -158051101 - AluJo SINE Alu -17 295 138 2072 129 0 7 chr4 44277246 44277555 -158050792 - AluSc SINE Alu -2 307 1 1072 146 5 60 chr4 44277555 44277585 -158050762 - AluJo SINE Alu -174 138 108 306 0 0 0 chr4 44277585 44277619 -158050728 + (TTA)n Simple_repeat Simple_repeat 2 35 0 2066 104 13 0 chr4 44277623 44277921 -158050426 - AluSx SINE Alu -10 302 1 1657 157 20 7 chr4 44277985 44278278 -158050069 - AluJb SINE Alu -13 299 3 344 235 5 103 chr4 44278281 44278494 -158049853 - L1MEc LINE L1 -5341 776 585 895 179 5 77 chr4 44278722 44278917 -158049430 - MER5A DNA MER1_type -8 181 1 1718 111 13 70 chr4 44278942 44279257 -158049090 - AluJb SINE Alu -15 297 1 437 345 64 77 chr4 44279443 44279713 -158048634 - L1MEc LINE L1 -5931 465 199 2137 92 3 0 chr4 44279713 44280023 -158048324 + AluY SINE Alu 1 311 0 437 345 64 77 chr4 44280023 44280142 -158048205 - L1MEc LINE L1 -6197 199 80 241 270 48 0 chr4 44280255 44280318 -158048029 + L2 LINE L2 3248 3313 0 2172 112 3 0 chr4 44280493 44280798 -158047549 + AluSp SINE Alu 1 306 -7 2086 103 23 7 chr4 44280834 44281136 -158047211 + AluSx SINE Alu 1 307 -5 288 323 10 0 chr4 44281141 44281240 -158047107 + MIR SINE MIR 56 155 -107 240 375 0 0 chr4 44281325 44281413 -158046934 + MIR SINE MIR 35 122 -86 474 191 140 59 chr4 44281602 44281738 -158046609 - L2 LINE L2 -9 3304 3158 2182 92 6 13 chr4 44281741 44282055 -158046292 + AluSx SINE Alu 1 312 0 896 254 11 128 chr4 44282091 44282219 -158046128 + MER21B LTR ERV1 13 154 -709 1467 155 53 50 chr4 44282219 44282522 -158045825 - AluJo SINE Alu -8 304 1 896 254 11 128 chr4 44282522 44282775 -158045572 + MER21B LTR ERV1 154 349 -514 984 228 69 13 chr4 44282829 44283061 -158045286 + MER21B LTR ERV1 355 599 -264 1562 123 0 0 chr4 44283239 44283458 -158044889 + AluSx SINE Alu 1 219 -93 686 237 82 27 chr4 44283510 44283729 -158044618 + MER21B LTR ERV1 612 842 -21 515 288 120 32 chr4 44283752 44284061 -158044286 - L2 LINE L2 -172 3141 2806 568 218 36 0 chr4 44284085 44284195 -158044152 + MER81 DNA DNA 1 114 0 655 68 23 0 chr4 44284264 44284352 -158043995 - AluSp/q SINE Alu -18 295 206 1432 294 3 71 chr4 44284352 44284678 -158043669 - AluY SINE Alu -5 306 3 2035 95 14 0 chr4 44284881 44285164 -158043183 + AluSp SINE Alu 1 287 -26 219 36 0 0 chr4 44285167 44285195 -158043152 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 878 260 32 14 chr4 44285216 44285409 -158042938 + MIR SINE MIR 30 229 -33 2105 78 41 3 chr4 44285409 44285702 -158042645 + AluY SINE Alu 1 304 -7 878 260 32 14 chr4 44285702 44285727 -158042620 + MIR SINE MIR 229 252 -10 2572 90 8 11 chr4 44285730 44286086 -158042261 + THE1A LTR MaLR 1 355 0 1892 85 35 35 chr4 44286513 44286830 -158041517 + AluSp SINE Alu 1 317 0 1580 124 85 35 chr4 44287317 44287599 -158040748 + AluSx SINE Alu 1 296 -16 240 35 0 0 chr4 44288565 44288594 -158039753 + (GA)n Simple_repeat Simple_repeat 2 30 0 1955 122 10 7 chr4 44288612 44288926 -158039421 - AluSx SINE Alu 0 312 1 1574 205 0 19 chr4 44289186 44289503 -158038844 - AluJb SINE Alu -1 311 1 217 265 111 68 chr4 44289626 44289743 -158038604 + L2 LINE L2 3150 3271 -1 181 219 0 0 chr4 44289787 44289819 -158038528 + MIR SINE MIR 113 144 -118 2265 101 0 0 chr4 44291034 44291340 -158037007 - AluSx SINE Alu -6 306 1 776 289 29 0 chr4 44291536 44291782 -158036565 + LTR16C LTR ERVL 232 484 -7 2262 86 0 0 chr4 44291972 44292264 -158036083 - AluSx SINE Alu -20 292 1 318 292 62 0 chr4 44292334 44292430 -158035917 + L2 LINE L2 3212 3313 0 2199 103 0 0 chr4 44293249 44293541 -158034806 + AluSg SINE Alu 3 294 -16 2069 114 27 0 chr4 44293543 44293841 -158034506 + AluSx SINE Alu 1 306 -6 1780 152 9 19 chr4 44295382 44295697 -158032650 - AluJb SINE Alu 0 312 1 180 0 0 0 chr4 44295747 44295767 -158032580 + (TA)n Simple_repeat Simple_repeat 2 21 0 2367 79 3 0 chr4 44295767 44296071 -158032276 - AluSp SINE Alu -8 305 1 642 202 8 0 chr4 44296196 44296325 -158032022 + FLAM_C SINE Alu 11 140 -3 839 223 46 0 chr4 44296427 44296602 -158031745 + AluJb SINE Alu 121 303 -9 344 240 104 79 chr4 44296779 44296958 -158031389 - MIR3 SINE MIR -43 165 16 194 250 25 0 chr4 44297580 44297620 -158030727 - L3 LINE CR1 -25 1552 1512 434 167 250 9 chr4 44297640 44297748 -158030599 - L2 LINE L2 -1 3312 3179 2021 13 0 0 chr4 44297750 44297978 -158030369 - AluYa5 SINE Alu -9 302 75 739 155 9 0 chr4 44298012 44298128 -158030219 - Tigger1 DNA MER2_type 0 2418 2302 * 9875 117 25 15 chr4 44298118 44298185 -158030162 - Tigger1 DNA MER2_type -882 1536 1471 1743 151 10 10 chr4 44298185 44298497 -158029850 - AluJb SINE Alu 0 312 1 9875 117 25 15 chr4 44298497 44299471 -158028876 - Tigger1 DNA MER2_type -947 1471 472 1955 115 11 0 chr4 44299471 44299781 -158028566 - AluSx SINE Alu 0 313 1 9875 117 25 15 chr4 44299781 44300235 -158028112 - Tigger1 DNA MER2_type -1946 472 24 930 257 72 26 chr4 44300241 44300695 -158027652 - L2 LINE L2 -158 3155 2669 1640 153 4 0 chr4 44300929 44301191 -158027156 - AluSx SINE Alu -39 273 11 811 112 0 0 chr4 44301458 44301565 -158026782 + AluSq/x SINE Alu 1 107 -206 463 167 0 0 chr4 44301665 44301731 -158026616 - AluJ/FLAM SINE Alu -244 68 3 2328 160 11 33 chr4 44301781 44302031 -158026316 - L1MB5 LINE L1 -17 6157 5920 2067 110 0 0 chr4 44302031 44302322 -158026025 + AluSx SINE Alu 1 291 -21 2328 160 11 33 chr4 44302322 44302522 -158025825 - L1MB5 LINE L1 -254 5920 5717 838 189 37 30 chr4 44302722 44302886 -158025461 - FRAM SINE Alu -12 164 1 300 289 99 82 chr4 44302901 44303243 -158025104 + Charlie8 DNA MER1_type 75 422 -1995 437 165 16 211 chr4 44303327 44303395 -158024952 - L1MB7 LINE L1 -3 6181 6101 2004 87 0 54 chr4 44303395 44303731 -158024616 + AluSx SINE Alu 1 320 0 437 165 16 211 chr4 44303731 44303866 -158024481 - L1MB7 LINE L1 -83 6101 6028 1947 86 118 0 chr4 44303866 44304145 -158024202 + AluSx SINE Alu 1 312 0 437 165 16 211 chr4 44304145 44304181 -158024166 - L1MB7 LINE L1 -156 6028 5987 328 143 16 0 chr4 44304952 44305015 -158023332 + MER53 DNA DNA 124 187 -2 273 258 124 10 chr4 44305387 44305484 -158022863 - MIR SINE MIR -68 194 87 200 209 93 0 chr4 44305678 44305721 -158022626 + L2 LINE L2 3226 3272 0 372 282 0 27 chr4 44306097 44306207 -158022140 - MIR3 SINE MIR -18 190 84 316 279 35 0 chr4 44307256 44307342 -158021005 - L2 LINE L2 0 3313 3225 228 35 0 0 chr4 44308245 44308274 -158020073 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 614 186 152 0 chr4 44308284 44308429 -158019918 + Charlie5 DNA MER1_type 1 167 -2445 * 1342 144 148 38 chr4 44308423 44308762 -158019585 + Charlie5 DNA MER1_type 2249 2624 0 1573 157 30 0 chr4 44308874 44309142 -158019205 + AluJb SINE Alu 1 276 -36 1061 126 164 65 chr4 44309250 44309422 -158018925 - AluJo SINE Alu -37 275 73 2126 88 23 10 chr4 44309422 44309729 -158018618 + AluSp SINE Alu 2 312 -1 1061 126 164 65 chr4 44309729 44309787 -158018560 - AluJo SINE Alu -239 73 22 405 0 0 0 chr4 44309788 44309833 -158018514 + (TG)n Simple_repeat Simple_repeat 2 46 0 299 326 103 17 chr4 44309965 44310198 -158018149 - L2 LINE L2 -1063 2251 1999 617 234 19 32 chr4 44310257 44310411 -158017936 - MIR SINE MIR -77 185 34 2119 117 10 0 chr4 44310506 44310815 -158017532 + AluSx SINE Alu 1 312 0 499 243 57 14 chr4 44311224 44311364 -158016983 + L3b LINE CR1 1248 1393 -190 983 256 49 4 chr4 44311474 44311720 -158016627 - MIR SINE MIR 0 262 6 331 254 107 89 chr4 44311818 44312156 -158016191 + MLT1H LTR MaLR 17 360 -182 1615 142 3 66 chr4 44312236 44312568 -158015779 - AluSx SINE Alu -1 311 1 959 85 0 0 chr4 44312574 44312703 -158015644 - L1MB3 LINE L1 0 6183 6055 1971 102 0 66 chr4 44312703 44313035 -158015312 - AluSq SINE Alu -3 310 1 1560 133 0 0 chr4 44313041 44313282 -158015065 - L1MB3 LINE L1 0 6183 5943 539 250 32 0 chr4 44313548 44313672 -158014675 - MIR SINE MIR -54 208 81 343 194 134 148 chr4 44314018 44314235 -158014112 - MER112 DNA MER1_type -46 214 1 596 68 0 0 chr4 44314239 44314313 -158014034 + Alu SINE Alu 223 296 -13 727 209 16 0 chr4 44314706 44314835 -158013512 + FLAM_C SINE Alu 1 131 -2 2342 71 0 3 chr4 44314842 44315138 -158013209 - AluSp SINE Alu -18 295 1 773 129 73 0 chr4 44315578 44315702 -158012645 - FLAM_C SINE Alu 0 133 1 1123 131 11 0 chr4 44315962 44316137 -158012210 - AluSg/x SINE Alu -2 310 134 188 0 0 69 chr4 44316139 44316168 -158012179 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 760 126 0 9 chr4 44316168 44316279 -158012068 - AluSp/q SINE Alu -29 284 175 183 281 175 18 chr4 44316386 44316500 -158011847 + L2 LINE L2 2924 3055 -217 239 233 50 0 chr4 44316694 44316754 -158011593 + MLT1L LTR MaLR 3 65 -550 2020 124 13 0 chr4 44316951 44317258 -158011089 + AluSx SINE Alu 1 311 -1 1878 116 0 75 chr4 44317343 44317663 -158010684 + AluSx SINE Alu 1 296 -16 828 233 73 12 chr4 44318197 44318442 -158009905 - MER58B DNA MER1_type -1 340 81 27 73 0 0 chr4 44318660 44318715 -158009632 + AT_rich Low_complexity Low_complexity 1 55 0 2182 89 0 7 chr4 44318716 44319008 -158009339 + AluSc SINE Alu 1 290 -19 21 26 0 26 chr4 44319033 44319051 -158009296 + AT_rich Low_complexity Low_complexity 1 18 -20 1950 97 50 0 chr4 44319051 44319330 -158009017 + AluSx SINE Alu 1 293 -19 21 26 0 26 chr4 44319330 44319350 -158008997 + AT_rich Low_complexity Low_complexity 18 38 0 1714 154 0 11 chr4 44319978 44320287 -158008060 - AluJb SINE Alu 0 306 1 1996 131 3 13 chr4 44320708 44321020 -158007327 + AluSx SINE Alu 1 309 -3 1034 239 143 67 chr4 44321146 44321657 -158006690 + MLT1H1 LTR MaLR 1 550 -5 1507 163 23 46 chr4 44321747 44322054 -158006293 - AluJo SINE Alu -12 300 1 2463 37 0 0 chr4 44322094 44322389 -158005958 + AluY SINE Alu 1 295 -16 275 356 27 27 chr4 44322393 44322440 -158005907 + L3 LINE CR1 1315 1361 -216 2284 73 6 19 chr4 44322440 44322757 -158005590 + AluSp SINE Alu 1 313 0 275 356 27 27 chr4 44322757 44322855 -158005492 + L3 LINE CR1 1360 1460 -117 433 303 103 36 chr4 44322917 44323112 -158005235 + MIR SINE MIR 47 254 -8 192 333 64 0 chr4 44323092 44323170 -158005177 + L3 LINE CR1 1471 1553 -24 * 305 291 95 90 chr4 44323549 44323638 -158004709 + MIR SINE MIR 14 101 -161 1959 125 3 26 chr4 44323638 44323950 -158004397 + AluSx SINE Alu 1 305 -7 305 291 95 90 chr4 44323950 44324049 -158004298 + MIR SINE MIR 101 203 -59 2398 67 0 0 chr4 44324119 44324418 -158003929 + AluSc SINE Alu 1 299 -10 1485 258 79 22 chr4 44324599 44324658 -158003689 - L1ME3A LINE L1 -5 6165 6111 739 180 8 23 chr4 44324658 44324786 -158003561 + FLAM_C SINE Alu 1 126 -7 1485 258 79 22 chr4 44324786 44325269 -158003078 - L1ME3A LINE L1 -59 6111 5592 354 133 0 40 chr4 44325291 44325366 -158002981 + (TCTCC)n Simple_repeat Simple_repeat 2 73 0 940 82 0 0 chr4 44325668 44325813 -158002534 + AluSg/x SINE Alu 160 304 0 393 270 103 24 chr4 44326064 44326190 -158002157 - MIR3 SINE MIR -3 205 70 787 137 23 23 chr4 44326531 44326662 -158001685 + FLAM_C SINE Alu 3 133 -10 847 232 49 99 chr4 44326721 44327126 -158001221 + MLT1J1 LTR MaLR 62 446 0 305 313 36 27 chr4 44328159 44328271 -158000076 + MIR SINE MIR 15 127 -135 1782 158 16 0 chr4 44328390 44328693 -157999654 + AluJo SINE Alu 1 308 -4 733 234 70 28 chr4 44328947 44328965 -157999382 + MIR SINE MIR 17 33 -229 2202 102 0 0 chr4 44328965 44329260 -157999087 + AluSg SINE Alu 2 296 -14 733 234 70 28 chr4 44329260 44329455 -157998892 + MIR SINE MIR 33 239 -23 399 158 0 45 chr4 44329468 44329560 -157998787 - AluJ/FLAM SINE Alu -240 62 1 230 321 0 25 chr4 44329667 44329748 -157998599 - MIR SINE MIR -135 127 49 509 313 34 0 chr4 44329907 44330083 -157998264 - MIR SINE MIR -1 261 80 696 140 0 0 chr4 44330620 44330727 -157997620 + AluSg/x SINE Alu 191 297 -15 1862 140 0 22 chr4 44330738 44331052 -157997295 + AluJb SINE Alu 1 307 -5 244 247 41 14 chr4 44331062 44331135 -157997212 + L1M4 LINE L1 4514 4588 -1558 1946 81 0 0 chr4 44331333 44331581 -157996766 + AluSq SINE Alu 39 286 -27 576 77 0 0 chr4 44331581 44331659 -157996688 + (TAGA)n Simple_repeat Simple_repeat 2 79 0 2474 50 0 0 chr4 44332008 44332306 -157996041 - AluY SINE Alu -13 298 1 2171 92 0 3 chr4 44332315 44332608 -157995739 - AluSx SINE Alu -20 292 1 3372 108 8 35 chr4 44332691 44333182 -157995165 - MER1A DNA MER1_type 0 529 52 336 281 117 56 chr4 44333198 44333447 -157994900 + L1MC4a LINE L1 1712 1975 -4421 2049 113 0 0 chr4 44333529 44333841 -157994506 + AluSx SINE Alu 1 312 0 399 342 53 9 chr4 44333864 44334206 -157994141 + L1MC4a LINE L1 4870 5226 -989 1028 93 6 49 chr4 44334227 44334333 -157994014 + L1PB1 LINE L1 5997 6095 -56 2178 101 3 16 chr4 44334333 44334640 -157993707 + AluSx SINE Alu 1 303 -9 1028 93 6 49 chr4 44334640 44334695 -157993652 + L1PB1 LINE L1 6095 6151 0 1740 94 68 4 chr4 44334711 44334976 -157993371 + AluSx SINE Alu 12 293 -19 488 253 82 10 chr4 44334979 44335173 -157993174 + L1MC4a LINE L1 5888 6095 -1782 651 144 135 0 chr4 44335215 44335319 -157993028 + FLAM_C SINE Alu 1 118 -15 44 0 0 0 chr4 44335319 44335363 -157992984 + AT_rich Low_complexity Low_complexity 1 44 0 2011 128 7 10 chr4 44335468 44335772 -157992575 + AluSx SINE Alu 1 303 -9 1640 140 45 21 chr4 44336058 44336344 -157992003 + AluSx SINE Alu 1 293 -19 706 97 32 0 chr4 44336348 44336472 -157991875 + GA-rich Low_complexity Low_complexity 1 128 0 2115 128 0 0 chr4 44337187 44337485 -157990862 + AluSx SINE Alu 1 298 -14 733 220 177 5 chr4 44337609 44337795 -157990552 + MER20 DNA MER1_type 1 218 -1 2092 91 17 3 chr4 44337893 44338189 -157990158 + AluSp SINE Alu 1 300 -13 369 164 0 0 chr4 44338313 44338368 -157989979 - MER81 DNA DNA -2 112 58 186 167 0 0 chr4 44338836 44338872 -157989475 + T-rich Low_complexity Low_complexity 1 36 0 429 131 12 83 chr4 44338923 44339007 -157989340 - AluJo SINE Alu -167 145 68 821 134 0 54 chr4 44339188 44339337 -157989010 - FRAM SINE Alu -18 158 18 854 235 54 5 chr4 44339404 44339608 -157988739 - MIR SINE MIR -26 236 23 309 313 46 23 chr4 44340503 44340634 -157987713 + L2 LINE L2 2603 2736 -578 1689 150 21 4 chr4 44340661 44340962 -157987385 + AluSp SINE Alu 1 306 0 408 322 187 0 chr4 44341257 44341589 -157986758 + L2 LINE L2 1647 2040 -1274 407 274 22 115 chr4 44341837 44341945 -157986402 + L2 LINE L2 2611 2727 -587 2040 119 0 7 chr4 44341945 44342239 -157986108 + AluSx SINE Alu 3 294 -18 2207 99 0 0 chr4 44342248 44342542 -157985805 + AluSg SINE Alu 1 294 -16 407 274 22 115 chr4 44342542 44342693 -157985654 + L2 LINE L2 2735 2855 -459 387 0 0 0 chr4 44342702 44342745 -157985602 + (TG)n Simple_repeat Simple_repeat 2 44 0 2057 91 4 4 chr4 44342746 44343021 -157985326 - AluSq SINE Alu -33 280 6 816 221 122 9 chr4 44343082 44343295 -157985052 - AluJo SINE Alu 0 312 76 244 175 0 0 chr4 44343295 44343335 -157985012 - Alu SINE Alu -128 175 136 2148 117 0 3 chr4 44343346 44343653 -157984694 - AluSx SINE Alu -6 306 1 2070 64 0 21 chr4 44343653 44343933 -157984414 - AluY SINE Alu -1 310 37 2415 53 0 0 chr4 44343940 44344239 -157984108 - AluY SINE Alu -2 309 11 1496 153 45 8 chr4 44344246 44344514 -157983833 - L1PA13 LINE L1 0 6163 5886 357 298 69 38 chr4 44344534 44344665 -157983682 + MIR3 SINE MIR 25 159 -49 746 94 0 27 chr4 44344769 44344826 -157983521 - L1PA13 LINE L1 -281 5882 5826 1651 143 82 0 chr4 44344826 44345106 -157983241 - AluJb SINE Alu -9 303 1 746 94 0 27 chr4 44345106 44345158 -157983189 - L1PA13 LINE L1 -337 5826 5774 2461 65 0 0 chr4 44345161 44345468 -157982879 - AluY SINE Alu -4 307 1 1148 259 19 49 chr4 44345509 44345879 -157982468 + L2 LINE L2 2953 3311 -2 184 246 61 44 chr4 44345904 44346018 -157982329 + L2 LINE L2 2468 2583 -731 238 308 116 30 chr4 44346101 44346299 -157982048 + L2 LINE L2 2807 3021 -251 195 319 66 11 chr4 44346414 44346505 -157981842 + L2 LINE L2 3143 3238 -75 2031 116 36 7 chr4 44346538 44346898 -157981449 - AluSq SINE Alu 0 369 1 272 338 0 0 chr4 44346901 44346975 -157981372 + L2 LINE L2 3231 3304 -9 491 272 129 32 chr4 44347000 44347217 -157981130 - MIR SINE MIR 0 262 25 952 80 7 33 chr4 44347240 44347390 -157980957 - L1MA5 LINE L1 -3 6297 6152 35 0 0 0 chr4 44347400 44347435 -157980912 + AT_rich Low_complexity Low_complexity 1 35 0 1405 172 55 45 chr4 44347435 44347579 -157980768 - AluJb SINE Alu -19 293 152 2090 71 67 0 chr4 44347579 44347862 -157980485 - AluSx SINE Alu -10 302 1 1405 172 55 45 chr4 44347862 44348007 -157980340 - AluJb SINE Alu -160 152 1 742 182 0 0 chr4 44348249 44348370 -157979977 - FLAM_A SINE Alu -12 121 1 349 246 0 0 chr4 44348510 44348579 -157979768 - L2 LINE L2 -2 3311 3243 921 230 60 17 chr4 44348655 44348890 -157979457 + MIR SINE MIR 15 259 -3 21 57 0 0 chr4 44349483 44349518 -157978829 + AT_rich Low_complexity Low_complexity 1 35 0 2187 88 0 10 chr4 44349633 44349928 -157978419 + AluSg SINE Alu 1 292 -18 822 160 0 0 chr4 44349997 44350116 -157978231 + AluJb SINE Alu 2 120 -192 720 57 0 0 chr4 44350305 44350393 -157977954 - AluS SINE Alu -223 89 2 2154 105 0 7 chr4 44350495 44350791 -157977556 + AluSc SINE Alu 1 294 -15 35 54 0 0 chr4 44350902 44350958 -157977389 + AT_rich Low_complexity Low_complexity 1 56 0 1674 167 26 7 chr4 44351178 44351484 -157976863 + AluJb SINE Alu 1 312 0 790 159 68 25 chr4 44351500 44351663 -157976684 + FRAM SINE Alu 1 169 -7 2282 94 0 0 chr4 44351747 44352054 -157976293 + AluSg SINE Alu 1 307 -3 393 207 58 58 chr4 44352064 44352185 -157976162 + L2 LINE L2 2300 2420 -894 1518 174 8 4 chr4 44352366 44352625 -157975722 + AluJo SINE Alu 1 260 -52 388 315 61 52 chr4 44352650 44352953 -157975394 + L2 LINE L2 2742 3066 -247 2033 118 7 0 chr4 44353135 44353440 -157974907 + AluSx SINE Alu 1 307 -5 2166 88 3 3 chr4 44353445 44353740 -157974607 + AluSg SINE Alu 1 295 -15 857 128 0 40 chr4 44353904 44354053 -157974294 - FLAM_C SINE Alu 0 143 1 1025 258 135 45 chr4 44355283 44355817 -157972530 - L2 LINE L2 0 3313 2699 2087 123 0 0 chr4 44355817 44356110 -157972237 + AluSx SINE Alu 17 293 -19 1025 258 135 45 chr4 44356110 44356204 -157972143 - L2 LINE L2 -614 2699 2615 997 195 0 0 chr4 44356728 44356892 -157971455 - FAM SINE Alu -11 164 1 234 0 0 0 chr4 44357058 44357084 -157971263 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1713 163 14 0 chr4 44357087 44357364 -157970983 - AluSx SINE Alu -31 281 1 659 182 200 36 chr4 44357367 44357532 -157970815 - MIR SINE MIR -65 197 6 2297 87 37 0 chr4 44358063 44358363 -157969984 - AluSq SINE Alu -2 311 1 21 0 0 0 chr4 44358621 44358642 -157969705 + AT_rich Low_complexity Low_complexity 1 21 0 306 130 0 0 chr4 44364240 44364286 -157964061 + MIR SINE MIR 189 234 -28 371 253 4 29 chr4 44364352 44364456 -157963891 + MIR SINE MIR 20 128 -80 378 188 103 43 chr4 44364953 44365070 -157963277 - MIR SINE MIR -51 211 88 24 0 0 0 chr4 44365133 44365157 -157963190 + AT_rich Low_complexity Low_complexity 1 24 0 2183 108 0 0 chr4 44365679 44365975 -157962372 + AluSx SINE Alu 2 297 -15 25 31 0 0 chr4 44365978 44366010 -157962337 + AT_rich Low_complexity Low_complexity 1 32 0 28 0 0 0 chr4 44366383 44366411 -157961936 + AT_rich Low_complexity Low_complexity 1 28 0 1611 118 4 21 chr4 44366664 44366901 -157961446 - AluSg/x SINE Alu -8 304 72 1906 130 0 4 chr4 44367018 44367288 -157961059 + AluSq SINE Alu 25 293 -20 2870 217 36 16 chr4 44367293 44368043 -157960304 + L1M4 LINE L1 2397 3161 -2985 202 102 0 61 chr4 44368186 44368235 -157960112 + (TGAA)n Simple_repeat Simple_repeat 3 48 0 2008 129 0 7 chr4 44368827 44369122 -157959225 - AluSx SINE Alu -19 293 1 2105 115 51 3 chr4 44369134 44369429 -157958918 - AluSx SINE Alu -3 309 1 267 340 62 0 chr4 44370081 44370178 -157958169 - MIR SINE MIR -71 137 35 1629 174 3 20 chr4 44370344 44370637 -157957710 - AluJo SINE Alu -24 288 1 2229 111 0 3 chr4 44370662 44370959 -157957388 - AluSx SINE Alu -14 298 3 1540 209 137 36 chr4 44370980 44371453 -157956894 - MER113 DNA MER1_type? 0 521 1 2553 63 3 0 chr4 44371522 44371822 -157956525 - AluSp SINE Alu -12 301 1 1625 147 26 15 chr4 44372389 44372654 -157955693 + AluJo SINE Alu 1 268 -44 2445 54 0 3 chr4 44373767 44374063 -157954284 - AluY SINE Alu -16 295 1 265 363 0 0 chr4 44374086 44374166 -157954181 + L2 LINE L2 3193 3272 0 726 220 174 18 chr4 44374267 44374485 -157953862 + MLT1J LTR MaLR 11 262 -249 292 323 10 31 chr4 44374576 44374672 -157953675 + MER5A DNA MER1_type 1 94 -95 188 306 188 24 chr4 44374609 44374694 -157953653 - MER5A DNA MER1_type -22 167 69 * 822 114 0 53 chr4 44374701 44374832 -157953515 + FLAM_C SINE Alu 2 125 -8 2162 101 0 0 chr4 44374843 44375130 -157953217 + AluSx SINE Alu 6 292 -20 22 0 0 0 chr4 44375137 44375159 -157953188 + AT_rich Low_complexity Low_complexity 1 22 0 733 179 0 30 chr4 44376804 44376938 -157951409 - FLAM_C SINE Alu -12 131 2 1518 193 7 11 chr4 44377227 44377507 -157950840 + AluJb SINE Alu 1 279 -33 438 243 36 50 chr4 44377605 44377745 -157950602 - MARNA DNA Mariner -378 208 71 777 195 0 0 chr4 44377810 44377928 -157950419 + AluJo/FLAM SINE Alu 1 118 -194 2463 85 0 0 chr4 44377928 44378235 -157950112 - AluY SINE Alu -4 307 1 24 0 0 0 chr4 44378244 44378268 -157950079 + AT_rich Low_complexity Low_complexity 1 24 0 1790 120 22 11 chr4 44378785 44379059 -157949288 - AluSg1 SINE Alu -5 304 28 2455 107 72 17 chr4 44379212 44379557 -157948790 + THE1B LTR MaLR 1 364 0 2144 107 3 17 chr4 44379656 44379955 -157948392 - AluSx SINE Alu -9 303 9 33 0 0 23 chr4 44380605 44380625 -157947722 + AT_rich Low_complexity Low_complexity 1 20 -23 2165 93 4 0 chr4 44380625 44380903 -157947444 - AluY SINE Alu -32 279 1 33 0 0 23 chr4 44380903 44380926 -157947421 + AT_rich Low_complexity Low_complexity 20 43 0 2264 201 7 21 chr4 44381188 44381728 -157946619 - MER77 LTR ERV1 -3 602 19 916 212 88 9 chr4 44382082 44382299 -157946048 + MIR SINE MIR 8 241 -21 2080 154 5 60 chr4 44382305 44382464 -157945883 + MER47A DNA MER2_type 4 170 -2153 2202 104 0 0 chr4 44382464 44382777 -157945570 + AluSg SINE Alu 1 313 0 2080 154 5 60 chr4 44382777 44383000 -157945347 + MER47A DNA MER2_type 170 366 0 544 175 41 6 chr4 44383051 44383222 -157945125 + (TA)n Simple_repeat Simple_repeat 2 178 0 273 57 0 0 chr4 44383241 44383276 -157945071 + (CA)n Simple_repeat Simple_repeat 2 36 0 279 0 0 0 chr4 44383418 44383449 -157944898 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2055 115 7 4 chr4 44383456 44383735 -157944612 - AluSq SINE Alu -33 280 1 801 181 8 0 chr4 44384059 44384192 -157944155 + AluSq/x SINE Alu 1 134 -179 29 47 0 0 chr4 44384192 44384235 -157944112 + AT_rich Low_complexity Low_complexity 1 43 0 1205 151 0 0 chr4 44384235 44384414 -157943933 + AluJb SINE Alu 118 296 -16 2121 113 0 3 chr4 44384544 44384847 -157943500 + AluSx SINE Alu 2 303 0 426 290 43 29 chr4 44384923 44385061 -157943286 + L2 LINE L2 2899 3038 -275 787 199 68 52 chr4 44385061 44385274 -157943073 + L1M4 LINE L1 3530 3749 -2397 2159 129 10 0 chr4 44385274 44385576 -157942771 + AluSx SINE Alu 1 305 -7 787 199 68 52 chr4 44385576 44385613 -157942734 + L1M4 LINE L1 3749 3784 -2362 2389 73 10 7 chr4 44386096 44386397 -157941950 + AluSp SINE Alu 1 302 -11 198 0 0 0 chr4 44386605 44386627 -157941720 + (GAATG)n Simple_repeat Simple_repeat 3 24 0 300 248 58 41 chr4 44387307 44387428 -157940919 + MIR SINE MIR 140 262 0 1356 220 77 34 chr4 44387431 44387781 -157940566 + MLT1A1 LTR MaLR 1 365 0 650 232 110 69 chr4 44388006 44388149 -157940198 - MIR SINE MIR 0 262 103 2053 107 0 182 chr4 44388149 44388561 -157939786 + MER1B DNA MER1_type 1 337 0 650 232 110 69 chr4 44388561 44388663 -157939684 - MIR SINE MIR -159 103 7 26 0 0 0 chr4 44389564 44389590 -157938757 + AT_rich Low_complexity Low_complexity 1 26 0 24883 26 2 0 chr4 44389590 44393157 -157935190 - L1PA3 LINE L1 0 6155 2586 2083 117 40 0 chr4 44393707 44394005 -157934342 - AluSx SINE Alu -2 310 1 662 320 79 37 chr4 44394477 44394805 -157933542 + L2 LINE L2 2369 2710 -604 616 305 67 22 chr4 44394811 44395080 -157933267 + L1MEc LINE L1 49 329 -6067 362 252 30 38 chr4 44395086 44395217 -157933130 - L1M4 LINE L1 -2259 3887 3758 2341 95 3 3 chr4 44395443 44395749 -157932598 + AluSp SINE Alu 1 306 -7 2129 160 30 0 chr4 44395752 44396089 -157932258 - MER7A DNA MER2_type 0 346 2 2403 94 0 0 chr4 44396286 44396585 -157931762 + AluSc SINE Alu 1 299 -10 216 184 0 0 chr4 44397221 44397270 -157931077 + (TA)n Simple_repeat Simple_repeat 2 50 0 654 303 61 17 chr4 44398663 44398894 -157929453 - MIR SINE MIR -2 260 20 2268 111 0 0 chr4 44398918 44399215 -157929132 + AluSx SINE Alu 1 297 -15 2198 88 30 0 chr4 44399314 44399610 -157928737 - AluSq SINE Alu -8 305 1 187 269 0 39 chr4 44399730 44399782 -157928565 + L2 LINE L2 3137 3186 -86 22 80 0 0 chr4 44399851 44399901 -157928446 + AT_rich Low_complexity Low_complexity 1 50 0 30 19 0 39 chr4 44400012 44400043 -157928304 + AT_rich Low_complexity Low_complexity 1 31 -19 757 167 18 0 chr4 44400043 44400157 -157928190 - FLAM_A SINE Alu -17 116 1 30 19 0 39 chr4 44400157 44400177 -157928170 + AT_rich Low_complexity Low_complexity 31 50 0 24 77 0 0 chr4 44400222 44400274 -157928073 + AT_rich Low_complexity Low_complexity 1 52 0 21 36 0 0 chr4 44400683 44400711 -157927636 + AT_rich Low_complexity Low_complexity 1 28 0 1851 176 0 10 chr4 44401122 44401434 -157926913 - AluJb SINE Alu -3 309 1 301 311 15 8 chr4 44401527 44401659 -157926688 + (TA)n Simple_repeat Simple_repeat 1 133 0 227 140 0 88 chr4 44401688 44401745 -157926602 + LTR66 LTR ERVL 390 441 -169 1223 174 7 51 chr4 44401786 44402080 -157926267 + L1MEc LINE L1 391 671 -5442 264 104 21 42 chr4 44402081 44402120 -157926227 - Alu SINE Alu -255 47 8 2263 116 3 0 chr4 44402120 44402423 -157925924 - AluSp SINE Alu -9 304 1 644 170 0 10 chr4 44402597 44402697 -157925650 - AluS SINE Alu -213 100 2 1878 174 3 0 chr4 44402783 44403093 -157925254 - AluJo SINE Alu -1 311 1 596 274 113 8 chr4 44403108 44403374 -157924973 + L1MEc LINE L1 2279 2572 -3643 4593 178 57 38 chr4 44403386 44403667 -157924680 + L1MB7 LINE L1 4224 4498 -1686 1536 137 78 19 chr4 44403667 44403923 -157924424 + AluJb SINE Alu 40 310 -2 1946 148 7 7 chr4 44403933 44404230 -157924117 + AluJo SINE Alu 1 297 -15 4593 178 57 38 chr4 44404230 44404913 -157923434 + L1MB7 LINE L1 4506 5175 -1009 2247 118 0 0 chr4 44404913 44405209 -157923138 + AluSx SINE Alu 1 296 -16 4593 178 57 38 chr4 44405209 44406112 -157922235 + L1MB7 LINE L1 5175 6128 -56 550 263 130 15 chr4 44406119 44406389 -157921958 + L1MEc LINE L1 2558 2858 -3357 994 204 15 0 chr4 44406399 44406595 -157921752 - AluJo SINE Alu -25 287 89 464 259 77 67 chr4 44406628 44406714 -157921633 + L1MEc LINE L1 2851 2935 -3280 2381 85 0 3 chr4 44406714 44407008 -157921339 - AluSq SINE Alu -20 293 1 464 259 77 67 chr4 44407008 44407234 -157921113 + L1MEc LINE L1 2935 3166 -3049 229 275 99 18 chr4 44408352 44408523 -157919824 + L1MEc LINE L1 3113 3297 -2918 1221 60 0 30 chr4 44408525 44408691 -157919656 + SVA Other Other 1226 1386 0 29 60 0 0 chr4 44408705 44408755 -157919592 + AT_rich Low_complexity Low_complexity 1 50 0 385 243 95 40 chr4 44408798 44408946 -157919401 + L1MEc LINE L1 3374 3529 -2686 312 250 101 101 chr4 44408996 44409164 -157919183 + L1MEc LINE L1 3551 3718 -2497 2307 101 0 10 chr4 44409173 44409481 -157918866 - AluSg SINE Alu -5 305 1 1155 239 173 12 chr4 44409481 44409816 -157918531 - L2 LINE L2 -891 2423 2035 417 259 130 6 chr4 44409832 44409994 -157918353 + LTR50 LTR ERVL 1 182 -613 231 202 30 111 chr4 44410161 44410260 -157918087 + LTR50 LTR ERVL 569 659 -136 520 187 0 19 chr4 44410308 44410415 -157917932 + L1MC5 LINE L1 7081 7185 -776 1466 209 120 38 chr4 44410521 44411070 -157917277 + L1MC5 LINE L1 7334 7927 -34 259 237 92 59 chr4 44411143 44411295 -157917052 - L2 LINE L2 -1670 1644 1488 498 308 167 0 chr4 44411478 44411699 -157916648 - MIR SINE MIR -3 259 2 28 29 0 0 chr4 44412135 44412170 -157916177 + AT_rich Low_complexity Low_complexity 1 35 0 215 247 141 0 chr4 44412195 44412280 -157916067 - MIR SINE MIR 0 262 166 420 316 46 13 chr4 44412371 44412523 -157915824 - MIR SINE MIR -89 173 17 25 31 0 0 chr4 44412649 44412681 -157915666 + AT_rich Low_complexity Low_complexity 1 32 0 822 272 25 8 chr4 44412682 44412921 -157915426 - MIR SINE MIR -7 255 13 602 344 47 0 chr4 44413109 44413321 -157915026 - MIR SINE MIR -3 259 38 2288 100 0 3 chr4 44413818 44414128 -157914219 + AluSx SINE Alu 1 309 -3 746 279 51 14 chr4 44414369 44414584 -157913763 - MIR SINE MIR -12 250 28 288 0 0 0 chr4 44414760 44414792 -157913555 + (TG)n Simple_repeat Simple_repeat 2 33 0 425 331 7 0 chr4 44414792 44414934 -157913413 + MIR SINE MIR 71 213 -49 198 0 0 0 chr4 44415071 44415093 -157913254 + (A)n Simple_repeat Simple_repeat 1 22 0 2073 127 10 0 chr4 44415925 44416216 -157912131 + AluSx SINE Alu 1 294 -18 1754 183 3 16 chr4 44416542 44416853 -157911494 - AluJo SINE Alu -5 307 1 441 246 44 19 chr4 44416989 44417183 -157911164 - MIR SINE MIR -19 243 37 325 213 222 0 chr4 44417677 44417785 -157910562 + L2 LINE L2 3182 3313 0 2357 70 13 0 chr4 44418470 44418768 -157909579 - AluSx SINE Alu -10 302 1 607 242 8 0 chr4 44418891 44419019 -157909328 - FLAM_A SINE Alu -4 129 1 741 243 60 0 chr4 44419284 44419469 -157908878 + MER58A DNA MER1_type 1 196 -28 1239 158 18 35 chr4 44419472 44419700 -157908647 + AluJb SINE Alu 69 292 -20 238 147 0 0 chr4 44419713 44419747 -157908600 + MER58A DNA MER1_type 191 224 0 441 237 42 17 chr4 44419791 44419909 -157908438 - MER45A DNA AcHobo 0 178 58 201 74 0 0 chr4 44420457 44420484 -157907863 + (TA)n Simple_repeat Simple_repeat 1 27 0 2086 105 34 7 chr4 44420822 44421116 -157907231 + AluSx SINE Alu 1 302 -10 1899 147 3 13 chr4 44421389 44421688 -157906659 - AluSx SINE Alu -16 296 1 188 294 207 26 chr4 44421837 44422022 -157906325 + L2 LINE L2 2482 2632 -681 188 200 25 0 chr4 44422022 44422062 -157906285 - L3 LINE CR1 -1144 433 393 188 294 207 26 chr4 44422062 44422198 -157906149 + L2 LINE L2 2632 2742 -571 2218 111 3 23 chr4 44422198 44422505 -157905842 - AluSx SINE Alu -11 301 1 188 294 207 26 chr4 44422505 44422785 -157905562 + L2 LINE L2 2742 3278 -35 183 270 40 40 chr4 44422908 44422982 -157905365 - L2 LINE L2 -3 3310 3237 2309 108 0 6 chr4 44423253 44423568 -157904779 + AluSq SINE Alu 1 313 0 323 270 81 63 chr4 44423997 44424108 -157904239 + L2 LINE L2 3156 3268 -4 2227 118 0 6 chr4 44424200 44424514 -157903833 + AluSx SINE Alu 1 312 0 24 77 0 0 chr4 44425911 44425963 -157902384 + GC_rich Low_complexity Low_complexity 1 52 0 2319 77 7 3 chr4 44426218 44426518 -157901829 - AluSx SINE Alu -11 301 1 1086 61 0 0 chr4 44427096 44427227 -157901120 + AluSg/x SINE Alu 176 306 -6 230 184 82 0 chr4 44427437 44427486 -157900861 - L2 LINE L2 -2 3270 3218 569 120 150 10 chr4 44428036 44428136 -157900211 - AluSc SINE Alu -14 295 182 885 120 0 0 chr4 44428136 44428253 -157900094 - AluSq/x SINE Alu -195 117 1 500 235 65 111 chr4 44428253 44428771 -157899576 + L2 LINE L2 2616 3111 -161 1978 237 51 16 chr4 44428919 44429413 -157898934 + MER77 LTR ERV1 78 588 -17 225 359 0 13 chr4 44429437 44429515 -157898832 + L2 LINE L2 3233 3309 -4 1134 127 5 99 chr4 44429762 44429817 -157898530 + AluJo SINE Alu 83 142 -170 2304 99 3 0 chr4 44429817 44430110 -157898237 + AluSx SINE Alu 1 294 -18 1134 127 5 99 chr4 44430110 44430275 -157898072 + AluJo SINE Alu 142 282 -30 207 100 0 0 chr4 44430278 44430308 -157898039 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 1476 131 0 0 chr4 44431327 44431541 -157896806 + AluSg SINE Alu 1 214 -96 2064 138 0 0 chr4 44431765 44432054 -157896293 + AluSx SINE Alu 1 289 -23 384 272 68 34 chr4 44432227 44432374 -157895973 + MIR SINE MIR 2 153 -109 27 29 0 0 chr4 44432444 44432478 -157895869 + AT_rich Low_complexity Low_complexity 1 34 0 210 307 13 0 chr4 44434488 44434563 -157893784 - MIR SINE MIR -10 252 177 660 266 121 94 chr4 44434600 44434692 -157893655 + L2 LINE L2 10 98 -3216 1780 120 116 0 chr4 44434692 44434959 -157893388 + AluSx SINE Alu 1 298 -14 1567 176 41 10 chr4 44434965 44435255 -157893092 + AluJo SINE Alu 1 299 -13 660 266 121 94 chr4 44435255 44435527 -157892820 + L2 LINE L2 102 391 -2923 3317 276 88 12 chr4 44435530 44436923 -157891424 + L2 LINE L2 1815 3313 0 521 238 79 8 chr4 44436924 44437050 -157891297 - MIR SINE MIR -100 162 28 2113 108 0 11 chr4 44437680 44437967 -157890380 - AluSx SINE Alu -2 310 27 855 157 0 15 chr4 44437984 44438118 -157890229 + FLAM_C SINE Alu 1 132 -1 203 363 0 25 chr4 44438287 44438367 -157889980 + L3 LINE CR1 1471 1548 -29 207 337 24 0 chr4 44438376 44438459 -157889888 - L3 LINE CR1 -11 1566 1482 237 329 57 7 chr4 44438722 44438862 -157889485 - L1MC/D LINE L1 -2289 5519 5373 495 235 7 46 chr4 44438910 44438950 -157889397 - Charlie2 DNA MER1_type 0 2862 2822 2259 118 0 0 chr4 44438950 44439246 -157889101 - AluSx SINE Alu -16 296 1 495 235 7 46 chr4 44439246 44439358 -157888989 - Charlie2 DNA MER1_type -40 2822 2716 * 577 202 119 41 chr4 44439333 44439551 -157888796 - Charlie2a DNA MER1_type -1163 1699 1465 434 148 0 11 chr4 44439607 44439695 -157888652 + (GGGA)n Simple_repeat Simple_repeat 4 90 0 557 180 98 0 chr4 44439773 44439895 -157888452 - Charlie2a DNA MER1_type -2553 309 176 352 299 103 0 chr4 44439908 44440025 -157888322 + MIR SINE MIR 133 261 -1 456 250 161 88 chr4 44440045 44440222 -157888125 - L1MC/D LINE L1 -798 5348 5185 2094 143 0 13 chr4 44440222 44440536 -157887811 + AluJb SINE Alu 1 310 -2 456 250 161 88 chr4 44440536 44440929 -157887418 - L1MC/D LINE L1 -961 5185 4736 272 232 218 35 chr4 44441267 44441409 -157886938 + MER112 DNA MER1_type 12 179 -81 6563 34 4 0 chr4 44441409 44442169 -157886178 - L1PA3 LINE L1 -14 6141 5379 598 123 9 61 chr4 44442219 44442333 -157886014 - L1MB8 LINE L1 -2 6176 6069 695 204 15 0 chr4 44442333 44442470 -157885877 - L1M4 LINE L1 -1158 4988 4850 722 153 368 0 chr4 44442478 44442641 -157885706 + AluJo SINE Alu 85 307 -5 334 187 11 110 chr4 44442646 44442737 -157885610 - L1M4 LINE L1 -1296 4850 4769 2433 74 3 0 chr4 44442764 44443060 -157885287 + AluSx SINE Alu 1 297 -15 262 272 0 29 chr4 44443060 44443163 -157885184 - L1M4 LINE L1 -2197 3949 3850 1064 284 33 20 chr4 44443339 44443746 -157884601 - HERV16 LTR ERVL -3536 1460 1083 970 243 187 29 chr4 44443746 44444195 -157884152 - MLT1E3 LTR MaLR 0 624 105 857 195 17 59 chr4 44444203 44444439 -157883908 - MLT1C LTR MaLR 0 467 242 1022 159 0 0 chr4 44444464 44444615 -157883732 - AluSg/x SINE Alu -28 284 134 2096 108 35 0 chr4 44444615 44444901 -157883446 - AluSq SINE Alu -17 296 1 29 0 0 0 chr4 44444971 44445000 -157883347 + AT_rich Low_complexity Low_complexity 1 29 0 24 32 0 0 chr4 44445456 44445487 -157882860 + AT_rich Low_complexity Low_complexity 1 31 0 1138 69 0 14 chr4 44445954 44446099 -157882248 - AluSg/x SINE Alu -11 298 156 2078 112 41 0 chr4 44446366 44446660 -157881687 + AluSx SINE Alu 1 306 -6 186 231 0 0 chr4 44448744 44448783 -157879564 + MIR3 SINE MIR 157 195 -13 1926 150 0 25 chr4 44448894 44449208 -157879139 + AluJb SINE Alu 1 306 -6 1752 117 98 11 chr4 44449891 44450165 -157878182 + AluSx SINE Alu 1 298 -14 27 29 0 0 chr4 44451891 44451925 -157876422 + AT_rich Low_complexity Low_complexity 1 34 0 262 300 145 25 chr4 44452993 44453210 -157875137 + MIR SINE MIR 1 228 -34 25 0 0 0 chr4 44453495 44453520 -157874827 + AT_rich Low_complexity Low_complexity 1 25 0 471 217 67 67 chr4 44455268 44455462 -157872885 + MIR SINE MIR 57 256 -6 2053 135 3 3 chr4 44455732 44456036 -157872311 + AluJb SINE Alu 1 304 -8 1172 178 69 35 chr4 44456038 44456269 -157872078 - MER8 DNA MER2_type 0 239 1 742 149 0 0 chr4 44457496 44457603 -157870744 - FLAM_A SINE Alu -18 124 18 2179 117 7 7 chr4 44457783 44458092 -157870255 - AluSx SINE Alu -3 309 1 367 153 0 0 chr4 44458172 44458231 -157870116 + FLAM SINE Alu 73 131 -2 1013 139 6 0 chr4 44458417 44458583 -157869764 - FRAM SINE Alu -10 166 1 213 188 106 71 chr4 44458649 44458734 -157869613 + L2 LINE L2 3139 3226 -46 2107 99 3 3 chr4 44458991 44459295 -157869052 + AluSq SINE Alu 1 304 0 2079 90 14 0 chr4 44459574 44459862 -157868485 - AluSp SINE Alu -21 292 1 467 284 76 41 chr4 44459961 44460158 -157868189 + MIR SINE MIR 3 206 -56 572 271 64 0 chr4 44461766 44461906 -157866441 + MIR SINE MIR 2 150 -112 781 103 12 6 chr4 44462617 44462879 -157865468 + AluSq SINE Alu 1 312 -1 2956 192 28 49 chr4 44463087 44463193 -157865154 - L1MB7 LINE L1 -7 6177 6070 1840 153 0 10 chr4 44463193 44463481 -157864866 - AluJb SINE Alu -21 291 7 2956 192 28 49 chr4 44463481 44464062 -157864285 - L1MB7 LINE L1 -114 6070 5505 1518 127 116 15 chr4 44465070 44465337 -157863010 - AluSg SINE Alu -16 294 1 705 128 18 0 chr4 44465353 44465462 -157862885 - HY1 scRNA scRNA -1 111 1 639 228 85 38 chr4 44466300 44466511 -157861836 + MIR SINE MIR 31 251 -11 2160 133 36 30 chr4 44466518 44466880 -157861467 + THE1B LTR MaLR 1 364 0 244 233 17 17 chr4 44467186 44467246 -157861101 - MIR SINE MIR 0 262 203 576 197 8 39 chr4 44467248 44467375 -157860972 + L2 LINE L2 3191 3313 0 660 307 83 80 chr4 44467685 44468489 -157859858 + L3 LINE CR1 768 1574 -3 1303 201 3 98 chr4 44469483 44469801 -157858546 + AluJo SINE Alu 1 288 -14 2069 90 7 13 chr4 44469818 44470118 -157858229 + AluSq SINE Alu 5 302 -11 22 0 0 0 chr4 44470688 44470710 -157857637 + AT_rich Low_complexity Low_complexity 1 22 0 372 43 0 0 chr4 44470710 44470756 -157857591 + (CA)n Simple_repeat Simple_repeat 2 47 0 288 276 195 8 chr4 44471440 44471563 -157856784 + L2 LINE L2 3123 3268 -4 466 286 130 6 chr4 44472322 44472483 -157855864 + MIR3 SINE MIR 18 198 -10 966 210 80 5 chr4 44473252 44473626 -157854721 + MLT1D LTR MaLR 45 505 0 2336 54 7 0 chr4 44473695 44473990 -157854357 + AluY SINE Alu 3 299 -12 1867 144 0 3 chr4 44474892 44475209 -157853138 + AluSx SINE Alu 1 316 0 182 311 16 0 chr4 44476141 44476202 -157852145 + MIR3 SINE MIR 113 174 -34 1968 122 0 11 chr4 44476834 44477027 -157851320 - AluSx SINE Alu 0 326 136 2297 69 3 7 chr4 44477027 44477331 -157851016 - AluSc SINE Alu -6 303 1 1968 122 0 11 chr4 44477331 44477465 -157850882 - AluSx SINE Alu -190 136 2 201 333 118 20 chr4 44477626 44477728 -157850619 - L3 LINE CR1 -73 1504 1393 1100 139 0 0 chr4 44477774 44477940 -157850407 - FRAM SINE Alu -11 165 1 327 330 0 0 chr4 44477950 44478038 -157850309 - L3 LINE CR1 -199 1378 1291 202 256 0 0 chr4 44478246 44478285 -157850062 + MIR SINE MIR 223 261 -1 2322 91 0 0 chr4 44478355 44478662 -157849685 - AluSx SINE Alu -5 307 1 1841 141 0 3 chr4 44480367 44480677 -157847670 - AluSx SINE Alu 0 309 1 207 0 0 0 chr4 44480921 44480944 -157847403 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 342 346 43 39 chr4 44482080 44482288 -157846059 + L1ME4a LINE L1 5843 6051 -70 400 302 101 0 chr4 44482460 44482609 -157845738 - MIR SINE MIR -80 182 19 219 211 18 35 chr4 44482908 44482965 -157845382 - L2 LINE L2 -1 3271 3216 316 240 73 31 chr4 44483386 44483482 -157844865 + MIR SINE MIR 44 143 -65 243 0 0 0 chr4 44484286 44484313 -157844034 + (A)n Simple_repeat Simple_repeat 1 27 0 421 139 23 47 chr4 44484996 44485082 -157843265 + AluSg/x SINE Alu 215 298 -12 306 333 40 0 chr4 44485307 44485406 -157842941 + L2 LINE L2 3137 3239 -33 410 273 137 19 chr4 44485558 44485719 -157842628 - MER5A DNA MER1_type 0 189 10 2160 108 7 3 chr4 44485818 44486124 -157842223 + AluSx SINE Alu 1 307 -5 1856 129 11 0 chr4 44486184 44486498 -157841849 + AluSc SINE Alu 1 317 0 2117 137 3 0 chr4 44487058 44487365 -157840982 - AluSx SINE Alu -4 308 1 1056 218 120 0 chr4 44487677 44487943 -157840404 - L1ME1 LINE L1 -170 5996 5699 * 1598 205 18 71 chr4 44487942 44488391 -157839956 + L1ME LINE L1 5290 5714 -452 1991 96 0 113 chr4 44488932 44489267 -157839080 - AluSx SINE Alu -5 297 1 654 201 162 7 chr4 44489312 44489466 -157838881 + MER58A DNA MER1_type 46 223 -1 251 320 160 28 chr4 44489541 44489722 -157838625 - MIR SINE MIR -7 255 51 327 167 0 17 chr4 44490023 44490083 -157838264 - MER69 DNA AcHobo 0 2526 2468 347 161 86 49 chr4 44490106 44490187 -157838160 - MER69 DNA AcHobo -1083 143 60 891 173 64 0 chr4 44490194 44490367 -157837980 - AluJo SINE Alu -127 185 2 816 226 21 21 chr4 44490367 44490553 -157837794 + MER5A DNA MER1_type 4 189 0 495 211 0 0 chr4 44491087 44491182 -157837165 - U13 snRNA snRNA -9 95 1 1781 163 13 0 chr4 44491235 44491536 -157836811 - AluSx SINE Alu -7 305 1 1615 190 0 7 chr4 44493495 44493790 -157834557 - AluJb SINE Alu -19 293 1 892 288 73 55 chr4 44494069 44494187 -157834160 + L1MEd LINE L1 553 667 -5643 1974 86 60 20 chr4 44494187 44494488 -157833859 - AluSq SINE Alu 0 313 1 892 288 73 55 chr4 44494488 44494644 -157833703 + L1MEd LINE L1 667 819 -5491 775 197 0 0 chr4 44494644 44494771 -157833576 - FLAM_A SINE Alu -6 127 1 892 288 73 55 chr4 44494771 44495236 -157833111 + L1MEd LINE L1 819 1332 -4978 1998 166 37 6 chr4 44495236 44495585 -157832762 + MLT1A1 LTR MaLR 3 362 -3 892 288 73 55 chr4 44495585 44495890 -157832457 + L1MEd LINE L1 1332 1630 -4680 1475 196 29 7 chr4 44495918 44496194 -157832153 + AluJo SINE Alu 1 282 -30 1464 84 0 10 chr4 44496195 44496398 -157831949 + AluY SINE Alu 2 202 -109 1230 158 37 46 chr4 44496539 44496780 -157831567 + AluJo SINE Alu 62 300 -12 252 288 123 46 chr4 44497481 44497700 -157830647 - MIR SINE MIR -9 253 18 315 186 86 0 chr4 44497797 44497867 -157830480 + MLT1D LTR MaLR 1 76 -429 225 237 0 51 chr4 44497872 44497909 -157830438 + (TA)n Simple_repeat Simple_repeat 1 35 -21 1546 112 126 11 chr4 44497909 44498178 -157830169 - AluSx SINE Alu -12 300 1 225 237 0 51 chr4 44498178 44498199 -157830148 + (TA)n Simple_repeat Simple_repeat 35 56 0 543 184 0 19 chr4 44498204 44498307 -157830040 - MLT1D LTR MaLR -321 184 84 1988 125 0 10 chr4 44498322 44498619 -157829728 - AluSx SINE Alu -18 294 1 328 325 72 6 chr4 44498709 44498875 -157829472 + MIR SINE MIR 19 195 -67 1228 126 0 0 chr4 44499144 44499334 -157829013 + AluSq SINE Alu 121 310 -3 757 280 69 13 chr4 44499573 44499805 -157828542 - MIR SINE MIR -10 252 8 1749 98 119 7 chr4 44499890 44500167 -157828180 - AluSx SINE Alu -4 308 1 4974 163 23 71 chr4 44500459 44501741 -157826606 - L1MB7 LINE L1 -16 6168 4973 2137 85 3 27 chr4 44502653 44502947 -157825400 + AluSg SINE Alu 3 289 -21 1884 134 17 0 chr4 44502956 44503247 -157825100 + AluSx SINE Alu 1 296 -16 388 230 140 0 chr4 44503790 44503890 -157824457 + L2 LINE L2 3195 3308 -5 295 227 7 39 chr4 44503891 44503903 -157824444 + GA-rich Low_complexity Low_complexity 2 13 -137 1822 177 3 3 chr4 44503903 44504213 -157824134 + AluSx SINE Alu 1 310 -2 295 227 7 39 chr4 44504213 44504354 -157823993 + GA-rich Low_complexity Low_complexity 13 150 0 2321 90 0 0 chr4 44504543 44504844 -157823503 - AluSq SINE Alu -12 301 1 453 279 42 79 chr4 44504877 44504948 -157823399 - L3 LINE CR1 -8 1569 1497 815 187 147 20 chr4 44504948 44505146 -157823201 - MER58A DNA MER1_type 0 224 2 453 279 42 79 chr4 44505146 44505314 -157823033 - L3 LINE CR1 -80 1497 1339 2033 231 72 23 chr4 44505440 44506006 -157822341 + L1MEc LINE L1 37 630 -5766 2115 79 0 39 chr4 44506222 44506527 -157821820 - AluSx SINE Alu -19 293 1 413 330 0 0 chr4 44506540 44506646 -157821701 - L1MEd LINE L1 -5448 671 566 450 0 0 0 chr4 44506997 44507047 -157821300 + (TTTTC)n Simple_repeat Simple_repeat 5 54 0 1882 125 38 3 chr4 44507069 44507357 -157820990 - AluSx SINE Alu -14 298 1 806 145 0 0 chr4 44507532 44507656 -157820691 + AluSg/x SINE Alu 168 291 -19 435 68 0 0 chr4 44507679 44507738 -157820609 + (GGAA)n Simple_repeat Simple_repeat 2 60 0 21 0 0 0 chr4 44508340 44508361 -157819986 + AT_rich Low_complexity Low_complexity 1 21 0 323 311 142 16 chr4 44508368 44508419 -157819928 - MIR SINE MIR -5 257 214 2623 239 37 5 chr4 44508419 44509012 -157819335 + MER90 LTR ERV1 3 614 0 323 311 142 16 chr4 44509012 44509143 -157819204 - MIR SINE MIR -48 214 52 2078 117 3 17 chr4 44509698 44510017 -157818330 - AluSx SINE Alu 0 312 1 22 0 0 0 chr4 44510017 44510039 -157818308 + AT_rich Low_complexity Low_complexity 1 22 0 1988 151 0 7 chr4 44510480 44510779 -157817568 + AluJb SINE Alu 1 297 -15 591 111 11 0 chr4 44510817 44510907 -157817440 + MER53 DNA DNA 99 189 0 29 28 0 0 chr4 44511110 44511146 -157817201 + AT_rich Low_complexity Low_complexity 1 36 0 754 285 45 12 chr4 44511883 44512125 -157816222 + LTR33 LTR ERVL 38 287 -234 2136 125 0 22 chr4 44512127 44512446 -157815901 - AluSx SINE Alu 0 312 1 30 27 0 0 chr4 44512446 44512483 -157815864 + AT_rich Low_complexity Low_complexity 1 37 0 1803 156 11 7 chr4 44512513 44512796 -157815551 + AluJb SINE Alu 3 286 -26 1945 110 20 20 chr4 44513088 44513388 -157814959 + AluSp SINE Alu 14 313 0 254 210 32 0 chr4 44513568 44513630 -157814717 + L1MB7 LINE L1 5945 6008 -176 301 193 0 57 chr4 44513652 44513740 -157814607 - L2 LINE L2 -62 3251 3169 1086 322 163 47 chr4 44514047 44515020 -157813327 - L2 LINE L2 -558 2756 1898 2282 105 10 0 chr4 44515020 44515324 -157813023 + AluSx SINE Alu 1 307 -5 1086 322 163 47 chr4 44515324 44515505 -157812842 - L2 LINE L2 -1416 1898 1740 703 269 33 42 chr4 44515505 44515717 -157812630 - MER63A DNA MER1_type 0 210 1 1086 322 163 47 chr4 44515717 44516171 -157812176 - L2 LINE L2 -1574 1740 959 310 204 41 129 chr4 44516179 44516326 -157812021 - L3 LINE CR1 -393 1184 1051 369 62 0 0 chr4 44518636 44518684 -157809663 + (T)n Simple_repeat Simple_repeat 1 48 0 963 182 0 12 chr4 44518690 44518860 -157809487 - AluJo SINE Alu -144 168 1 410 289 0 26 chr4 44518860 44518974 -157809373 + MIR3 SINE MIR 50 160 -48 340 294 25 10 chr4 44518982 44519148 -157809199 + MIR SINE MIR 34 261 -1 441 74 12 25 chr4 44519532 44519613 -157808734 - AluSp SINE Alu -1 312 233 1832 95 4 0 chr4 44519657 44519889 -157808458 - AluSp SINE Alu -80 233 1 2388 117 11 25 chr4 44520268 44520533 -157807814 - MER47A DNA MER2_type -1957 366 106 2395 86 3 0 chr4 44520533 44520834 -157807513 - AluY SINE Alu -9 302 1 2388 117 11 25 chr4 44520834 44520935 -157807412 - MER47A DNA MER2_type -2217 106 5 1934 135 0 10 chr4 44520990 44521287 -157807060 + AluSx SINE Alu 18 311 -1 332 273 113 54 chr4 44521308 44521935 -157806412 + L1M4 LINE L1 3024 3687 -2459 1084 193 169 49 chr4 44521937 44522263 -157806084 + MLT1A1 LTR MaLR 1 365 0 530 320 49 0 chr4 44522270 44522517 -157805830 + L1M4 LINE L1 3692 3950 -2196 335 196 18 0 chr4 44522544 44522600 -157805747 + Tigger5 DNA MER2_type 2 58 -2265 * 977 109 0 0 chr4 44522598 44522736 -157805611 + Tigger5 DNA MER2_type 2058 2195 -128 1899 138 62 0 chr4 44522798 44523087 -157805260 + AluSq SINE Alu 1 307 -6 627 186 59 0 chr4 44523087 44523205 -157805142 + Tigger5 DNA MER2_type 2199 2323 0 2178 115 0 3 chr4 44523896 44524191 -157804156 + AluSx SINE Alu 1 294 -18 2340 111 0 0 chr4 44524204 44524510 -157803837 + AluSg SINE Alu 2 307 -3 909 100 23 8 chr4 44524516 44524646 -157803701 + AluSq/x SINE Alu 1 132 -181 4533 153 30 24 chr4 44524647 44525515 -157802832 + L1MB2 LINE L1 5299 6171 0 281 315 69 39 chr4 44525541 44525744 -157802603 + L2 LINE L2 2197 2405 -909 267 103 0 0 chr4 44525756 44525795 -157802552 + (TGAA)n Simple_repeat Simple_repeat 4 42 0 4704 138 12 81 chr4 44525871 44526166 -157802181 - L1MB8 LINE L1 0 6178 5864 2309 114 0 0 chr4 44526166 44526472 -157801875 - AluSx SINE Alu -6 306 1 4704 138 12 81 chr4 44526472 44527074 -157801273 - L1MB8 LINE L1 -314 5864 5374 862 196 0 0 chr4 44527074 44527207 -157801140 - FLAM_C SINE Alu 0 133 1 4704 138 12 81 chr4 44527207 44527464 -157800883 - L1MB8 LINE L1 -804 5374 5101 722 152 0 0 chr4 44527467 44527572 -157800775 - FLAM_C SINE Alu -6 137 33 3412 209 23 25 chr4 44527578 44528295 -157800052 - L1MB8 LINE L1 -1047 5099 4383 1885 169 0 7 chr4 44528295 44528603 -157799744 - AluJb SINE Alu -6 306 1 3412 209 23 25 chr4 44528603 44528716 -157799631 - L1MB8 LINE L1 -1763 4383 4271 2292 95 16 0 chr4 44529253 44529557 -157798790 - AluSc SINE Alu 0 309 1 385 286 101 71 chr4 44529667 44529741 -157798606 - L1MEc LINE L1 -4143 2253 2183 1927 163 6 19 chr4 44529741 44530054 -157798293 - AluJb SINE Alu -3 309 1 385 286 101 71 chr4 44530054 44530065 -157798282 - L1MEc LINE L1 -4213 2183 2174 243 0 0 0 chr4 44530065 44530092 -157798255 + (ATTG)n Simple_repeat Simple_repeat 2 28 0 1834 149 7 0 chr4 44530094 44530375 -157797972 - AluSx SINE Alu -29 283 1 385 286 101 71 chr4 44530375 44530621 -157797726 - L1MEc LINE L1 -4222 2174 1908 931 148 32 0 chr4 44530765 44530920 -157797427 - AluY SINE Alu -21 290 131 2235 161 66 2 chr4 44582198 44582607 -15774574